LOCUS       DANLUT010000001        63386 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLUT010000001 DANLUT010000000
VERSION     DANLUT010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 63386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 63386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..63386
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..217
                     /locus_tag="PXB38_000001"
     CDS             <1..217
                     /locus_tag="PXB38_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005558558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5352379.1"
                     /translation="YGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHTDDETILTEE
                     FNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            199..510
                     /locus_tag="PXB38_000002"
     CDS             199..510
                     /locus_tag="PXB38_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5352380.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            621..1784
                     /gene="mnmA"
                     /locus_tag="PXB38_000003"
     CDS             621..1784
                     /gene="mnmA"
                     /locus_tag="PXB38_000003"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL5352381.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAADLADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRVIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVLDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            1901..3280
                     /gene="argH"
                     /locus_tag="PXB38_000004"
     CDS             1901..3280
                     /gene="argH"
                     /locus_tag="PXB38_000004"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL5352382.1"
                     /translation="MALWGGRFTQQADAKFKYFNNSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            3448..4446
                     /locus_tag="PXB38_000005"
     CDS             3448..4446
                     /locus_tag="PXB38_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL5352383.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIRLPLQ"
     gene            4549..5661
                     /gene="ispG"
                     /locus_tag="PXB38_000006"
                     /gene_synonym="gcpE"
     CDS             4549..5661
                     /gene="ispG"
                     /locus_tag="PXB38_000006"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL5352384.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            5667..6944
                     /gene="hisS"
                     /locus_tag="PXB38_000007"
     CDS             5667..6944
                     /gene="hisS"
                     /locus_tag="PXB38_000007"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL5352385.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALA
                     LGSQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYI
                     VFSGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESE
                     VAEKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            6954..7574
                     /locus_tag="PXB38_000008"
     CDS             6954..7574
                     /locus_tag="PXB38_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL5352386.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(7637..8740)
                     /gene="dnaN"
                     /locus_tag="PXB38_000009"
     CDS             complement(7637..8740)
                     /gene="dnaN"
                     /locus_tag="PXB38_000009"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL5352387.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(8759..10108)
                     /gene="dnaA"
                     /locus_tag="PXB38_000010"
     CDS             complement(8759..10108)
                     /gene="dnaA"
                     /locus_tag="PXB38_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL5352388.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNSLFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(10295..12142)
                     /locus_tag="PXB38_000011"
     CDS             complement(10295..12142)
                     /locus_tag="PXB38_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5352389.1"
                     /translation="MFEKLFQWFEARVETYPNETPRTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEEFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(12210..12719)
                     /gene="luxS"
                     /locus_tag="PXB38_000012"
     CDS             complement(12210..12719)
                     /gene="luxS"
                     /locus_tag="PXB38_000012"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL5352390.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGTPSAEEVVK
                     AWTASMEDALDKIPDVSAIPELNEYQCGSYKEHSLEEAHQIARNVLAAGIGVNRNEDL
                     ALDEKLLNP"
     gene            complement(12737..15403)
                     /locus_tag="PXB38_000013"
     CDS             complement(12737..15403)
                     /locus_tag="PXB38_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL5352391.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     NGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSHLSLSEVNDR
                     VLIHLKINSKYQHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(15486..15926)
                     /gene="fur"
                     /locus_tag="PXB38_000014"
     CDS             complement(15486..15926)
                     /gene="fur"
                     /locus_tag="PXB38_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL5352392.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(15962..16486)
                     /gene="fldA"
                     /locus_tag="PXB38_000015"
     CDS             complement(15962..16486)
                     /gene="fldA"
                     /locus_tag="PXB38_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL5352393.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(16492..16767)
                     /gene="ybfE"
                     /locus_tag="PXB38_000016"
     CDS             complement(16492..16767)
                     /gene="ybfE"
                     /locus_tag="PXB38_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL5352394.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSDLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            17008..17994
                     /locus_tag="PXB38_000017"
     CDS             17008..17994
                     /locus_tag="PXB38_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5352395.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANVLSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAAKLLKLVLAY"
     gene            18091..19386
                     /locus_tag="PXB38_000018"
     CDS             18091..19386
                     /locus_tag="PXB38_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5352396.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGIG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGIIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVLVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            19505..19873
                     /locus_tag="PXB38_000019"
     CDS             19505..19873
                     /locus_tag="PXB38_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL5352397.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            19873..21066
                     /locus_tag="PXB38_000020"
     CDS             19873..21066
                     /locus_tag="PXB38_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5352398.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVITTG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(21137..21355)
                     /gene="infA"
                     /locus_tag="PXB38_000021"
     CDS             complement(21137..21355)
                     /gene="infA"
                     /locus_tag="PXB38_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL5352399.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(21465..22124)
                     /locus_tag="PXB38_000022"
     CDS             complement(21465..22124)
                     /locus_tag="PXB38_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL5352400.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            22210..23073
                     /gene="serB"
                     /locus_tag="PXB38_000023"
     CDS             22210..23073
                     /gene="serB"
                     /locus_tag="PXB38_000023"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL5352401.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDEIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLDFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLK
                     NLATTFNIPQNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            23089..23580
                     /locus_tag="PXB38_000024"
     CDS             23089..23580
                     /locus_tag="PXB38_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL5352402.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            23665..23841
                     /locus_tag="PXB38_000025"
     CDS             23665..23841
                     /locus_tag="PXB38_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL5352403.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(23890..24186)
                     /locus_tag="PXB38_000026"
     CDS             complement(23890..24186)
                     /locus_tag="PXB38_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352404.1"
                     /translation="MKKHNIIILTLASASVVACRSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(24263..25231)
                     /gene="mdh"
                     /locus_tag="PXB38_000027"
     CDS             complement(24263..25231)
                     /gene="mdh"
                     /locus_tag="PXB38_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL5352405.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            25427..25888
                     /gene="argR"
                     /locus_tag="PXB38_000028"
     CDS             25427..25888
                     /gene="argR"
                     /locus_tag="PXB38_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL5352406.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNMQIEKLVKNVTQLFETSL"
     gene            25938..26834
                     /locus_tag="PXB38_000029"
     CDS             25938..26834
                     /locus_tag="PXB38_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL5352407.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSGDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            26879..29077
                     /gene="uvrD"
                     /locus_tag="PXB38_000030"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             26879..29077
                     /gene="uvrD"
                     /locus_tag="PXB38_000030"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL5352408.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHHNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKPTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
     gene            complement(29230..29304)
                     /locus_tag="PXB38_000031"
     tRNA            complement(29230..29304)
                     /locus_tag="PXB38_000031"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29270..29272),aa:Gln,seq:ttg)
     gene            complement(29359..29433)
                     /locus_tag="PXB38_000032"
     tRNA            complement(29359..29433)
                     /locus_tag="PXB38_000032"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29399..29401),aa:Gln,seq:ttg)
     gene            complement(29459..29543)
                     /locus_tag="PXB38_000033"
     tRNA            complement(29459..29543)
                     /locus_tag="PXB38_000033"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29507..29509),aa:Leu,seq:tag)
     gene            complement(29546..29622)
                     /locus_tag="PXB38_000034"
     tRNA            complement(29546..29622)
                     /locus_tag="PXB38_000034"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(29586..29588),aa:Met,seq:cat)
     gene            complement(29789..30613)
                     /gene="aroE"
                     /locus_tag="PXB38_000035"
     CDS             complement(29789..30613)
                     /gene="aroE"
                     /locus_tag="PXB38_000035"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL5352409.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQRFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(30620..31174)
                     /locus_tag="PXB38_000036"
     CDS             complement(30620..31174)
                     /locus_tag="PXB38_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL5352410.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(31167..31703)
                     /locus_tag="PXB38_000037"
     CDS             complement(31167..31703)
                     /locus_tag="PXB38_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL5352411.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(31713..32024)
                     /locus_tag="PXB38_000038"
     CDS             complement(31713..32024)
                     /locus_tag="PXB38_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL5352412.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(32017..32493)
                     /gene="recX"
                     /locus_tag="PXB38_000039"
     CDS             complement(32017..32493)
                     /gene="recX"
                     /locus_tag="PXB38_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL5352413.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(32552..33658)
                     /gene="recA"
                     /locus_tag="PXB38_000040"
     CDS             complement(32552..33658)
                     /gene="recA"
                     /locus_tag="PXB38_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL5352414.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(33759..34379)
                     /locus_tag="PXB38_000041"
     CDS             complement(33759..34379)
                     /locus_tag="PXB38_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL5352415.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(34357..35331)
                     /locus_tag="PXB38_000042"
     CDS             complement(34357..35331)
                     /locus_tag="PXB38_000042"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL5352416.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQKKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVKKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            35441..37048
                     /gene="rmuC"
                     /locus_tag="PXB38_000043"
     CDS             35441..37048
                     /gene="rmuC"
                     /locus_tag="PXB38_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL5352417.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRDAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            37187..37771
                     /locus_tag="PXB38_000044"
     CDS             37187..37771
                     /locus_tag="PXB38_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL5352418.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            37868..38950
                     /gene="prfA"
                     /locus_tag="PXB38_000045"
     CDS             37868..38950
                     /gene="prfA"
                     /locus_tag="PXB38_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL5352419.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSDQN"
     gene            39038..40291
                     /gene="prmC"
                     /locus_tag="PXB38_000046"
     CDS             39038..40291
                     /gene="prmC"
                     /locus_tag="PXB38_000046"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5352420.1"
                     /translation="MQTDNVTLSEWQFGEKPNTLANLVLAGIKTATCSGYCFYKLDNE
                     PLPQKGERHIVLDSQNCPVVMIELTCIERKKWFEIDEKFALLEGADSFSEWERTHRNF
                     FNAQLERAIDEQFELVCEQFHTVNIFSKTYAQWFRFAEQTLLENAEQDPFLNAKFDAN
                     LLLQAVTKRSKSAIFAFSETVLSERELVELAEKLARRAKGEPMAYILGYREFWSLPLK
                     VSPATLIPRPDTERLVELALEYANKRLENQKMLQILDLGTGTGAIALALASELGEKAQ
                     IIGVDFQNEAVQLAEENRQHLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDEADEN
                     LTVGDVRFEPLTALVADNKGLSDLQKIIQNAPLYLKPQGALMLEHSWQQGNAVRDLFD
                     LNLWEQVETAQDYAGNDRVTKAILK"
     gene            40300..41166
                     /locus_tag="PXB38_000047"
     CDS             40300..41166
                     /locus_tag="PXB38_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL5352421.1"
                     /translation="MDDIIEELLKELKDPKVTISETELKKFLYREILRLTTLIDRNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLDLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVVLYLAAVLDLPIYPVNFPTQLVLRAEMRQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESLVH"
     gene            41257..42111
                     /gene="kdsA"
                     /locus_tag="PXB38_000048"
     CDS             41257..42111
                     /gene="kdsA"
                     /locus_tag="PXB38_000048"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL5352422.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DKVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGVAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            42334..43281
                     /locus_tag="PXB38_000049"
     CDS             42334..43281
                     /locus_tag="PXB38_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL5352423.1"
                     /translation="MLNIVFLDRTGIPATHEIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSTVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVETGK"
     gene            43565..44737
                     /locus_tag="PXB38_000050"
     CDS             43565..44737
                     /locus_tag="PXB38_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL5352424.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIIQQLNPSIHLPTLISGSQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            44761..45444
                     /gene="lolD"
                     /locus_tag="PXB38_000051"
     CDS             44761..45444
                     /gene="lolD"
                     /locus_tag="PXB38_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL5352425.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAVNRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            45441..46706
                     /gene="lolE"
                     /locus_tag="PXB38_000052"
     CDS             45441..46706
                     /gene="lolE"
                     /locus_tag="PXB38_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL5352426.1"
                     /translation="MSTPFFISWRYQRGKQKNRLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALVKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(46781..48712)
                     /gene="thrS"
                     /locus_tag="PXB38_000053"
     CDS             complement(46781..48712)
                     /gene="thrS"
                     /locus_tag="PXB38_000053"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL5352427.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSALEIITAKDEDGLEIIRHSTAHLLGHAIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVTSCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEEGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLEASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(48879..50228)
                     /locus_tag="PXB38_000054"
     CDS             complement(48879..50228)
                     /locus_tag="PXB38_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5352428.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLMISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEIVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEEAAENSKV"
     gene            complement(50432..50998)
                     /locus_tag="PXB38_000055"
     CDS             complement(50432..50998)
                     /locus_tag="PXB38_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005711111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL5352429.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSFFVPEGTVLQAGL
                     YPFILGGVLKALLASVLVSPSYKFFSKL"
     gene            51079..51837
                     /locus_tag="PXB38_000056"
     CDS             51079..51837
                     /locus_tag="PXB38_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL5352430.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYYHGG
                     CCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVNCCE
                     NLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(51828..52622)
                     /locus_tag="PXB38_000057"
     CDS             complement(51828..52622)
                     /locus_tag="PXB38_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL5352431.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAEQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(52683..54270)
                     /locus_tag="PXB38_000058"
                     /pseudo
     CDS             complement(52683..54270)
                     /locus_tag="PXB38_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
     gene            complement(54456..56309)
                     /gene="dxs"
                     /locus_tag="PXB38_000059"
     CDS             complement(54456..56309)
                     /gene="dxs"
                     /locus_tag="PXB38_000059"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL5352432.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRQMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQGLEVGKANIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(56354..57166)
                     /gene="suhB"
                     /locus_tag="PXB38_000060"
     CDS             complement(56354..57166)
                     /gene="suhB"
                     /locus_tag="PXB38_000060"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL5352433.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            57347..58381
                     /locus_tag="PXB38_000061"
     CDS             57347..58381
                     /locus_tag="PXB38_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL5352434.1"
                     /translation="MQFKENNQPRFKHREERRSDERSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSSAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            58391..59275
                     /locus_tag="PXB38_000062"
     CDS             58391..59275
                     /locus_tag="PXB38_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL5352435.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YNYFTVLGSKLGWASKLF"
     gene            59414..60391
                     /locus_tag="PXB38_000063"
     CDS             59414..60391
                     /locus_tag="PXB38_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL5352436.1"
                     /translation="MTTNFKCQVHTIEFNENYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDESADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            60479..61510
                     /locus_tag="PXB38_000064"
     CDS             60479..61510
                     /locus_tag="PXB38_000064"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5352437.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTEKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            61598..61819
                     /locus_tag="PXB38_000065"
     CDS             61598..61819
                     /locus_tag="PXB38_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352438.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            62095..63357
                     /locus_tag="PXB38_000066"
     CDS             62095..63357
                     /locus_tag="PXB38_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL5352439.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
BASE COUNT        18806 a        12742 c        13620 g        18218 t
ORIGIN      
        1 ttatggttca aaaacggctt ctcgtttggc ttttaatcgt gggctaatca ctcagggcga
       61 agtttggcta gaaatgataa aaagccgcaa tataacagtt catactgacg atgaaactat
      121 tttaactgaa gaatttaata aaattatcaa ggcgtatctg cctttattta ttgaatttga
      181 acagcgagta gaaacactat gccaaacttt ggactaagcg aacgagcgac gaaaactatt
      241 accgatattc ttgcgaaata ccctgaagtg gagcaagcca ttatttacgg ctcgcgtgct
      301 aaaggtaatt atcgtgaagg ctcagatgta gatcttactt ttaaaggaaa agatcttact
      361 tacgatattg tcaaacgcat ttggggtgat ttggacgatt ccgactcgcc ctatttattt
      421 gacttgtcga tttatcatca attaaccaat gctaacttta ttgaacatat tgatagagta
      481 ggaaaagtct tttaccaaag agaactctaa tttcttaata ggcaagcggt tcattttgca
      541 aaattttttg caaatttcac cgcttgttgt ttttattatt aaccaatgtg cttcgcctta
      601 accaaagtta cgggagattt atgacaactc aattaacctc aaaaacctac gacactcatt
      661 tccctaaatt aaccccagaa caacttgctg aaaacagcaa gaaaaaagtc attatcggta
      721 tgtccggtgg ggtggattcc tcggtttccg cttttattct tcaacagcag ggctaccaag
      781 tggaaggctt gtttatgaaa aactgggaag aagatgatga tacggattat tgtaccgccg
      841 ccgccgatct tgccgatgct caagcggttg ccgataaact gggtatgaaa ctgcataaaa
      901 ttaattttgc agcggaatat tgggataatg tatttgaata tttcttggca gaatacaagg
      961 caggaagaac gccaaatccg gatattttgt gtaataaaga gatcaaattt aaagcctttt
     1021 tggaatatgc ggcagaagat cttggtgcgg attatattgc gaccgggcat tacgtccgcc
     1081 gtacgagcga tgatcaagat gcgaaacttt tgcgtggctt agatgaaaac aaagatcaga
     1141 gttacttttt atatgcgtta aataaaaagc agatcgggca gagtttattc ccagtgggtg
     1201 aaattgagaa gccgattgtg cgagtcattg ccgaagacct aggattagca accgcaaaga
     1261 aaaaagattc taccggcatt tgttttatcg gtgagcgtaa atttaaagat ttcttagctc
     1321 gttttctacc ggctcaaccg ggggaaatcc gcaccgttga gggcaaatta gtcggtcgcc
     1381 atgatgggct gatgtatcac acgcttgggc aacgcaaagg cttgggtatc ggtggggtga
     1441 aagggctaag tgaagatccg ttttatgtgg tggagaaaga cttaattaac aatgtattga
     1501 ttgtggcaca aggacacgat aattcagccc tgctttcaag tggcttaatt gcgaaacagc
     1561 tcacttgggt ggatatgcag ccgttgcgtg aaaatttacg ctgcacggta aaaacccgtt
     1621 atcgtcaagc agatattgcg tgtgaaatcc aagtgcttga tgatgaaacc attcgagtga
     1681 tgtttgatga accgcaaatt gccgtgacgc cggggcagtc tgccgtgttt tacttaggtg
     1741 aagtttgctt aggcggtggc attattgagt cacaattaaa atagttataa ataaatattg
     1801 aaatattttg catatttatg caaaataagc gaaaagttaa ggcggtaaaa cgcctttttc
     1861 attttgatcg atacaaagaa taatatacaa ggaacagact atggcacttt ggggtggacg
     1921 ctttacacaa caagcagacg caaaatttaa atattttaac aattcattac gttttgatta
     1981 ccgcttggcg attcaagata ttgaaggctc aatcggctgg gcaaaagcca ttacttcggt
     2041 aggtatttta acggtagcag aattagaaca actaatcgca gcattaaaag aggtgagagc
     2101 agaggtagaa tctaacctta ccatcatctt aaaagatgat gcggaagaca ttcacagctg
     2161 ggttgaatct aagctgattg aaaaagtggg cgatttaggt aaaaaattgc acaccgggcg
     2221 tagccgtaat gaccaagtag cggtggatat taaaatgtgg tgcaaggtgc aagcggtggc
     2281 attgcaagaa agaatccgag ctttgcaaga gcgtttggtt tccgttgccg aagaaaatca
     2341 agagtcggtg atgccgggct atacccattt acaacgagct cagcctgtga ccttcgctca
     2401 ttggtgtatg gcgtattatg aaatgctaga acgggatttc agccgtttga gtgatgctaa
     2461 taaacgtatg agcacttgcc cgcttggttc aggggcattg gctggtacgg cttacggcat
     2521 tgatcgtgac ttattagccc gtgatttagg ctttgaagaa gccacacgca acagtttaga
     2581 cagcgtgtca gatcgtgacc atattttaga gttgctctct actgcctcga tcagtatgat
     2641 gcacctctct cgctttgctg aagatttaat catttttaat agtggcgaat caggcttcct
     2701 tgaaatgtcg gatcgtgtga cctcaggctc atcacttatg ccacagaaga aaaaccctga
     2761 tgcttgtgag ctgattcgtg ggaaatccgg tcgggtattt ggggcattaa acggtttatt
     2821 aactacactc aaagggttac cacttgctta taataaagat atgcaagagg acaaagaggg
     2881 tatttttgat gcgttggaaa cttggcaggc ttgtttagaa attgcagaac ttgtactggt
     2941 tgatattcaa gtgaataccg aacgcacccg agaagccgct cagcaaggtt atgcgaatgc
     3001 gaccgagttg gcagattatt tagtggcgaa aggcgtgcca ttccgtgaag ctcatcatat
     3061 tgttggcgaa gcggtggttt acgcaatcag caaaaaagag ccacttgaag cattaagcat
     3121 taacgaattc cagcaattcc atcattcgat tggcgatgat gtttacccaa ttctctcgtt
     3181 agaatcttgc ttagaaaaac gttgtgccaa aggtggagtg aacccacaac gtgtggcaga
     3241 ggcgattgcg gtagccaaag ccaatttagc ttcaaagtaa aaccggatac aagcggtcat
     3301 attttgcaaa aaaattgaaa aatatgaccg cttgccgatt aaattttcaa ttttttacgc
     3361 attaagattg caaaataggc attacctctt taaacttccg aataattttt gaattttatt
     3421 tctactactt tctttaaaga gttttatatg acggaatcag ttaattctac tcaagctggt
     3481 acagcacttt ctttagggca acaattaaaa gcggctcgtg aagcgttaaa tctctctatt
     3541 acagatgttg ctcaaaaaac caacttaaaa aaatcacata ttgaatcact tgaaaatgat
     3601 atctttattc tacaaaatgt tgccccaact tttgtgcgtg gctatgtgcg taattatgtg
     3661 aaatttttgc gtttacctga atcccttatt tcgagcgtta attatggtga agtcactatt
     3721 ccaaaagaag tcactaaagt ttcttcagta aaaccttcat caaattcaca aggtaaaacc
     3781 ttaaagtatt taacggtatt agtattgctt gcggcattag gaatgacatt actttggtgg
     3841 tggcaagggt atcaaaaaga acaggaaaat cgcgagcaat ttgttagctc tgcaccagtt
     3901 gctgaagtgg cgaataccgc tacaaataat gatgcttcag cacaaacttc cgtgcctgtt
     3961 cagcaaccta ttcaggtttc agagcagcct gctcaagtag cagaaacggt agttgcagca
     4021 gaaccggcat taactgaaaa agtagagcct acacaagcag catcatcacc tgtaacacaa
     4081 gaagatgtta aagtggtaga agaagttaaa caagctgatg ccaccactgc acaggttgag
     4141 gcagttaatg ttttacagca atctcaatcg gaacaagccc ctacagaaca gcctgttgcg
     4201 gtaacgaatg atgagcttcg tatcgaaatt accggttcac aaagctggat tacagtgcgg
     4261 ggtgctaaaa ataaacgttt agcagaaaaa ttatataaca atggtgagac tttaagtttc
     4321 aatgagaatg agcaatatcg tttaaccatt ggtgcgcctg ccaatgtaaa agtgtactat
     4381 aaaggtcaag aagtaccatt gaaaattgat gggcgtgtag ctcgtattcg tttaccgtta
     4441 cagtaagctt gatttaacga tgaaaaacgc acgtaaagct agcatttaac gatagctgtc
     4501 tttacgagcg ttttctgttt ttataaattt tcacaattag ctaaaaatat gatacatcaa
     4561 tcacctatta aacgtcgggt atcgaagaaa atctatgtgg gtaatgtgcc tgtaggcggc
     4621 gatgcaccga ttacggttca gtcaatgacc aacacccgca caaccgatgt ggaagccacc
     4681 gttgctcaaa ttaaatcgct ggaacgggtc ggggctgata ttgtgcgtgt gtctgtgccg
     4741 acaatggacg ctgctgaggc atttaaagcg attaaacaac aagtgagtgt gccattggtg
     4801 gcggatatcc acttcgatta ccgcattgcg ttgaaagttg ccgaatatgg ggtggattgc
     4861 ttgcggatta acccgggtaa tatcgggaat gaagagcgga tccgcacggt ggtagattgt
     4921 gccagagata aaaacattcc gatccgaatc ggggtaaatg ccggatcatt agagcgtgat
     4981 ttgcaggaaa aatatggcga gccgacacca caggcattat tagaatcggc attacgccac
     5041 gttgatcact tagatcgcct taactttgat caattcaaag tcagcgtgaa agcctcagat
     5101 gtatttctag cggttgaatc ttaccgactt cttgcaaaac agattgatca gcccctgcat
     5161 ttaggtatta ctgaagcagg cggagcgaga gccggttcgg tgaaatcggc ggtaggctta
     5221 ggtctgttgc tagcggaagg gattggtgat accttgcgtg tgtcattagc ggctgatcct
     5281 gttgaagagg tgaaagtcgg ttttgatatt ttgaaatcgc tgcgtattcg ctctcgtggg
     5341 atcaacttta ttgcttgccc aacctgctcc cgccaagaaa ttgatgtgat tgcgacggta
     5401 aacgagctag aacaacgttt agaagacatt atcacgccga tggacgtttc gattatcggc
     5461 tgtgtggtaa acggtccagg agaggcgttg gtgtctgatt taggggtaac cggcagcaat
     5521 aaaatgagcg gcttttattt agatggcgtt cgtcaaaaag agcgttttga caacgcaaaa
     5581 ttaatcgacc aattagaagc taaaattcgt gccagagttg cacaacaaca taatcgtata
     5641 gatattgaac aaataggata aatatagtgg caaaaacaat tcaagcaatt cgaggaatga
     5701 acgactgctc accaagtgag tctccattat ggcaatgggt tgaacagaaa gtgcgtaatg
     5761 tgctggcaag ttacggctat tcggaagtac gtatgccgat tgtagaaagc actccgttat
     5821 ttgcccgtgc cattggcgaa gtaaccgatg tggtgtcgaa agagatgtac acgttctggg
     5881 ataacgatga gcaattaacg ctccgcccgg aaggtacagc cggttgtgtg cgtgcagcga
     5941 ttgagcgtgg ttggatctac aataatgagc aacgcttatg gtatatgggg ccgatgttcc
     6001 gccacgaacg tccacagaaa gggcgttacc gccaattcca ccaagccggt gttgaagtgt
     6061 ttggcattgc aaatccggaa attgatgcgg agttgattat tctcaccgca cgcctatgga
     6121 aagagttagg catcgatcaa catgtttctt tgcaacttaa ctctatcggc tcgttagaag
     6181 ctcgtgcaaa ttatcgctca gcattagtaa aatttttaga aaatcacacc gctttaatga
     6241 acgaagaaga gaaagagcgt ttggtgaaaa acccgctacg gattttagat accaaaaacg
     6301 aagcactaca aaatgtatta aacgatgccc caaaactgct cgattattta gatgatgaca
     6361 gccgtgaaca ttttacccaa ctttgtgcct tacttgatgc aatgggaatc cgttacgaag
     6421 tcaatccaaa attggtgcgt ggtttagact attacaataa aaccgtgttt gaatgggtca
     6481 cttcagcctt agccttaggc tcacaaggca ccgtatgtgg cggtgggcgt tatgacggct
     6541 tagtcgaaca actcggtgga cacgcaaccc aaggcgttgg ctttgcaatg ggcttagagc
     6601 gtttagtgct gttggtacaa gaggtgaata aagagattga tttaccaaaa acggtggatg
     6661 tgtatatcgt attctccggt gaaggggcaa cactaaatgc cttccaactt gcagagcaga
     6721 ttcgtagcga attgccacac gttggcgtaa tgacacactg ttccggcggt aaattccaaa
     6781 aacaatttaa gcgtgcagat aaagtagaag cgcaaattgc gttagtgatt ggcgaaagcg
     6841 aagtggctga aaagcaagtt gttatcaaag atttacgttc aggagcagaa caaatcacga
     6901 ttgctcaatc agagctgatt gctgagctat ctaaacgatt ttaggagaaa aagatgagta
     6961 acgaatattt aaataaaacc gaagagcagc aatttgaaga tgccaaaaat tggtttaaag
     7021 agaacgggac accgattttg gtggcgatta ttttagcttg tgcggcaact gccggctgga
     7081 atttttggaa aaatcaccag cttgaaacgg cacaaaaaac atccgcttca taccaaagcg
     7141 tgatggagag ttatttgcaa aatccaagca aaaatcaacc gcttgttgag aaatttattg
     7201 ccgataataa agattcaagc tatgccgctt ttgcccaatt tgaagtagct aaacaagcgg
     7261 tcgaaaaagg gaatttttct gcggcaaaaa cagcgttaca gtcagttttg acttattcgg
     7321 attcaacctt acaatctatc gctcgttttc gtttggctca aattgacttc caactaaaat
     7381 cttacgatga agcactggca agtctggctc aaattcaaga taaagcgtgg gaattgcgta
     7441 agcaaattct aacaggcgat attcttgcag caaaaggcga tattcctgcg gcgaaaagtg
     7501 cttatgagca agctaaaacg accgcaaatc ctcaggaaca aaccttaatt gatgtacgtt
     7561 tgaataactt ataaaaacaa agcctgattg aaataaaatc aatcaggctt ttttgttggt
     7621 ttagtgttgc tgtgaattat aaacgcattg gcataatcac atattcggca gagctgttgt
     7681 cgcaatcttc aattaagcaa ctagaacttg aatcaactaa gctaaaacgc acacgttggc
     7741 attttaaggt gtttaacaca tctaatacat agctaacgtt aaagccgact tccatttccg
     7801 ggctgtcgta ggcaacatca atgatctctt ccgcctcttc ttgctccgga ttgtttgcgg
     7861 taattttgag taaattattg cttaaggtta aacgcacccc tctaaatttc tcattagaaa
     7921 gaatcgctgc acgcattaat gcccgtttaa gggtttcggt ttccgcttct agaatgcgat
     7981 ctgcattgcg aggcagaact cggcggtaat ccgggaatct gccatcaatc agtttagagg
     8041 taaatacaat gccgttcatt gtaatacgga tattgcttga accgatttcc aaacgcacgg
     8101 tttcatcgtt gctggcaacc aagcgggaaa gctcaagtac ggctttgcgt ggcacgataa
     8161 ccgaatgagt caaaagctct tgatttagca ccattgtgca aaccgctaaa cggtgcccat
     8221 ctgtggcaac ggtgcgtaat aaattgcctt cggtttcaaa tttcattccg tttaagaaat
     8281 aacgggcgtc ttggtttgcc attgagaatt gggtggcatc aatcagacgg gcaagggtag
     8341 attgatcaat cgagaaatcc acttccggtt tccaatccat caaattcggg taatcacttg
     8401 ccggtaatgt agctaaacta aatttactac gtcctgcttt gataatggct ttatcttctt
     8461 caaattgtac cgaaatcacg ctgtcatcag gtaggctttt actgatatct aggaattttt
     8521 tagctggaat ggtaaatttt ccggcaaaat cgaccgcttg tagcagttgt gcttgggtgg
     8581 ttaattccac ttctaaatcg gtaccggtta aagatagacg attaccttca atttctaata
     8641 aaagattgtt aataacaggc aaagtcggac ggctacttaa tacgccacac acctgttgta
     8701 aaggcttaag taattgttct ctggtaatgg taatttgcat aatcattcct tcatcgggct
     8761 aagatgataa tttgcgtgtt aaatggatat aatcttcttg gataccgctt tcggtatcgc
     8821 gtaattcatt aatggttttg caggcgtgca tcacggtagt atgatcccga ccgccaaatt
     8881 cccgaccaat ttccggcaag ctgtggttgg ttagctcttt tgccagtgcc attgccattt
     8941 ggcgaggacg ggcaatgctt cttgcccgac ttttcgattt aatatcggca acttttatgc
     9001 cgtaatattc ggccacaatg cgttgaatat tttcaatcgt aatcaagtaa tcaaaagagg
     9061 caaacagatc ttgcaaggtt tcacgcaccg catcaaccgt aatcgggcga agggtcaatt
     9121 tttgccacgc aatcacacgg tttaatgctc cctccaattc acgcacattg gttcggagtt
     9181 tttgccccat taaataggcg gcatcttctt gcaaatctgc tccacgttct aaggcttttt
     9241 ggcgaagaat tgccactcgg gtttccaatt caggtggctc aatggtcgca ctaataccgc
     9301 cgcttaaacg ggatttaatc gccgtgtcaa ttttatcaat atttttcggc aacacatcgg
     9361 aggttaaaat aatctgtttg cgttgttcaa acagcgaatt taacagatgt aaaaattctt
     9421 cttgtacttt cggtttattg gcaagaaatt gaatatcgtc aatcattaac acatcaagcg
     9481 agcggtagaa ttttttgatt ttttccgcat cgttattgga actgttgatc gccttaataa
     9541 tatcacgata aaaacgttcc aagtgaatat atagcacccg agtacccggt gtgcgtttaa
     9601 ctaattcatt gccgatagcg tgcaataagt gggttttgcc taaaccggtg ccggcataaa
     9661 acgagagtgg gttgcaatgg ctttcgccta aattatccac cacttgttga gccactaatt
     9721 tagctaattg gtttgagcgg ccttgtacaa aattatcaaa ggtttgattt gggtttagcc
     9781 cggttttaaa gccggtattg ctaaattctg aactctcgtt ttttagattt gggctgacct
     9841 ttggctgttc tgtcggttta atcccaactt ttaacgtcac caccaaatta tcatttttcg
     9901 ccaaaaaacg ggcaagctcg gtaatctccg ataaaaattt atcttttacc cagttttcaa
     9961 caaattgatt ttgtgcataa agtgtgagtt ccccattctc agaactcgct tgcagaggac
    10021 gcagccaagt gctgtaatcg gttggtgaga ctttcgtttg taagtgatta aggcaatcag
    10081 accaaaggga agacacaatt tgctccaaaa ttattgttat taaaggtcat aatgatacct
    10141 gaaaaaaggg gagaaatctt gcaaattttt gatagatttt attggtgttt ggaagcggtt
    10201 ttaattggcg aacaagcggt cgttttttgt tgaaatcttg caaattgcta acaaaaaatg
    10261 accgcttgct tagtatgatg tgtgatggag ttgattaaat atccgtattc tccggtaaga
    10321 accccccgct ttggtgagcc caaagtctgg cgtaaacacc gttttgagca agcaattctt
    10381 cgtgcgtgcc ttgttcaacg atttcgcctt tatctaacac gataagtctg tccattgcca
    10441 taatggtaga gaggcggtgg gcaatcgcaa ccacggtttt accttccatt aattgcgtga
    10501 gattttcttg aattgccact tctacttcag agtctaacgc actggttgcc tcatcgagta
    10561 ataaaatcgg agcatctttt agcatcactc gggcaatcgc aatccgttgg cgttgtccgc
    10621 cggaaagttt tacccctcgt tcgccaacgt gtgcatcaaa accggttctg cctttggcat
    10681 cttgcaggtt tggaataaat tcgctagcgg cagcttgttc aacggctttg atcatctctt
    10741 cttcggtggc gttcgggcga ccgtacatca agttttcacg cacagagcga tgtaacagcg
    10801 aggtgtcttg agtcaccaaa ccaatttgtg agcgaaggct ttcttgggta atatcacgga
    10861 tattttgccc gtcaatcgtg attgaaccgt cttgaatatc gtaaaaacgc aataataaat
    10921 tggtgagcgt tgatttacct gcaccactac gcccgactaa accgactttt tcccccggtt
    10981 ttatagtgag gtcaaaatct ttcagtagcg gtttttttgg atcgtaggca aaatccacat
    11041 tctcaaattt aatttcgcct ttggttacat ttaacggttt cgcatcgatt ttatctacca
    11101 cattgtgtgg tttggaaagc gtaatcatac cgtcttgtac cgtacctaaa ttttcaaata
    11161 gacgagcaaa ttcccacata atccattgtg ataagccttt aatgcgtaaa gccaaagcgg
    11221 ttgaggtggc aatcgcccct gcagttacta cgcttgaacc ccaaagccat aaaccgatac
    11281 ccgcagttga aattattaat gccatcgagg ttagattagt tacggtttca attacagtca
    11341 ctaaacgcat ctgtttatgc actgtcacca taaattcttc catcgactct ttcgcatagg
    11401 cagattcacg gttgccgtgc gagaagagtt tgacggtggc aatgttagcg taagcatcgg
    11461 taattcgacc ggtcattaaa cttctggcat ccgattgctc ttgagcagct tgggctaatt
    11521 tcgggacaaa gtagataatg gttgccgcta atgagatgac ccataaaata aacggcacga
    11581 ataaccagcc gtcaagttgt aataaaatca cgctggaggt ggtgaagtaa accagcacat
    11641 acaccaacat atcggcacaa gtcataatca catcacgcac ggaaagggcg gtttgcatta
    11701 cttttgcaga cactcttcct gcaaattcgt cttgatagaa acctaaactt tgcccaagca
    11761 ttaagcggtg gaagttccaa cgcaaacgca ttgggaatac cccttgcaga gattgaaagc
    11821 gaatgctgct ggcaaggtaa acaaacacca ctgcaagtag ggcaataaaa aacataccga
    11881 taatcgtcca gcctttttct gcccaaagtt ctgttggcga gtatttattg acccaatcga
    11941 ctaaatcgcc cataaagcga aacagaaccg cttcgataat accgacagct gcaactaata
    12001 cggtcagtag taagatataa aaccgcattc ctttagtggc atcgtaaata aaaggaatga
    12061 gacctgattt tggggttctt ggcgtttcat ttgggtaagt ttccaccctt gcctcaaacc
    12121 attgaaacag tttttcaaac ataaatttgt gatttccgaa taaaatgcgg gggcaaataa
    12181 ccatttgccc ccgaaaagat gttaaaaaat tatggattaa gtaatttttc gtctaaggct
    12241 aaatcttcgt tgcgatttac accgatgccg gcagctaaca cattacgagc aatttggtga
    12301 gcttcttcta aagaatgctc tttgtaagag ccacattgat attcgttcag ctcaggaatt
    12361 gccgatacat cagggatttt atctaacgca tcttccattg aagccgtcca cgctttgaca
    12421 acctcttctg ctgaaggcgt gccgatgagc gacatataaa aaccggtacg gcagcccatt
    12481 ggcgaaatat caatgatctc cacttgttcg ctattgaggt ggtcacgcat aaagccggca
    12541 aaaagatgtt ccattgtgtg aatcccacgc accggtagaa tatcaatatt cgggcggcag
    12601 aaacggagat cgaacacggt aatggtatcg cctttcggtg tggtcattgt ttttgcaaca
    12661 cgcacggctg gggcgttcat tttggtgtga tctactttaa aactatctaa taaaggcatt
    12721 ttttactcca tcaatattat tccgcaattc cttgatccca agcaggggct tcatcaggta
    12781 gtttgcgttg taagaaaaat cgtctgtttg gctgagcttg aggcttcacc actttagtgt
    12841 aaggggtaga gaactcaata ccgccgttta ataactgcga cattgtgcct gagttcatac
    12901 ttacaccttg caggctcacg tccatcgtgt aacctgaagc ttgccagaat tgggtattgg
    12961 ttctgactaa gtgctgatat ttgctattaa ttttcaggtg aattaaaact ctatcattta
    13021 cttcgctgag gcttaaatgg ctgacaatcc ccacctgcat tccacgataa agcacaggtg
    13081 cttctggctg aataccattg gcattagtgg tttcaacaat aatcgggaaa ccgttggcat
    13141 aggtggtttt taccgtatcg gtatctgcaa gaacaaattg gttttgagct tgccctgaac
    13201 cgacatcaac cgtaatgtaa ttttgcagtg ctgcatctaa atttttaaag ccggaggtac
    13261 tgatttcagg cgagataaca ttaaatttac tgccggcttt tgcaattaac ggatagtatt
    13321 tcctttgaat gtaagcggtc gcttttatct gtttttttgc attttgtagc tcaagttttt
    13381 caatttgacc tacggttaag cccatatatt taatgtccat tccttcgctt aacttactcg
    13441 catcttttgc aatcagcgtg agataagtat tgcccgaagt ggctttctcc ttacttgcat
    13501 aaagcgtttt attgcctttt gaaccgccat tatcaaagct gatcgcccct tttaaggtac
    13561 gcattaatgg agctgtagtg atattcacgc ctttgagtga cacatcaaca ctcgttgccg
    13621 gctcaatcca gaaacggctt ttctcggtta atagatgacg ataatttggc tggataaata
    13681 gctcaacctc aaatttttgt tgtttcgggg ttatttttaa cacctcgccg acctgaaaat
    13741 cacgatatag caccaaagag ccttcgctga taccagataa tgaatctgcc gaaagggtag
    13801 tggtggcttt tttatctaag gtagccatgc ctgattccgc actttctata tctttataaa
    13861 gtgcatattg ttttttcggg ctaccgtcat ttttaccgtt aattaagcga acaccgcctt
    13921 ttaaccattc agatggtgaa ccggcgtgaa ctcttaaccc atctagcccc accgacatat
    13981 caatgttgga tatcgcaaca aatttgctgt tactcccaat caggttgcga taaggcggat
    14041 aaataatgac atcaaaacgt actttgtcta actctaggct acgtttgacg atttctccga
    14101 tttgcacatc gctatagtaa atcccctgat tggtatctac cccataggct tgaggagcaa
    14161 ttaagctaaa gctaagtaaa ttcggtaaac ttaatagata atcggcttcg ttttgtacca
    14221 caaattccga ttgaggttct ccttcccccg ggtgaacctc aaaatagaca ccacgcagca
    14281 gctcacctac tttcgtcagc tgctctgtgt ttaaggagaa tttcggctct ttgagcaaga
    14341 ttttagtttg ggagcgtagt aaattttcat aacttgggtc aattaataaa accccatcaa
    14401 tctgtttatg ctgccctgat tcttgctgtg gcacaccgtt gtcttttact tgcggtaatt
    14461 ttagctgcga aagcatacca atttgcacat tttggtgaaa aacaccagtc tcattaattt
    14521 ttaaattatg tgtaagcggt agttttacgt tgatttcaat tccacgttta gctgatttca
    14581 aatccggata tagctcaaat ttctgtcctt gctcggcaat ttccatatta tcaggcgaat
    14641 caaaagcaac cgcaccttgt actaccgagg caaggctgtc catattgatt ttaatacctt
    14701 gtaaatttac atcagcgcta ataccgctaa tattccaaaa tcggctctct tttttcacta
    14761 aatgagcgta tttttgatta atgacgacat caatttcgat ttttttctgg tctttggtaa
    14821 aacgataatc ggcaatatta cccactggca ctttacggaa ataaacactc gctccgacag
    14881 taatagagcc tatgtcatca gagattaaac ggatcagtaa atcgccatcg ctcacggtaa
    14941 tagccggagg atcttcttct gcaataaatt catcaacgaa atcgccttca ccgggaagta
    15001 gggtaatata gttaccagaa acaatcgcat ctaagcctga aacgccagcc aaagaagcac
    15061 ttggttgcac taaccaaaat ttagtctgtt tgcgtaaaat acttttggct tcagggttta
    15121 tttctgcttg cacttccact tcttttaaat tatcgacaaa ataaacacgc ttaacctgac
    15181 caatctgcaa gccttggtaa cgaatagcgg tttttccggc agtaatgcca tcacctttac
    15241 taaatcgaat cgtgattgtt tcaccttgct cttttaaaat ttggaaaaat agcaaagcac
    15301 caataataaa agcaactatt ggtaacagcc aaaaaggaga aattttgcga ggctgccgga
    15361 tttgggcatc tacaacagtg tgggtatttt cttccatcgt cattttaaat tagggaaacc
    15421 tatatagaac aataccgaag acccaaaggg acttcggtaa tagaaataag tcaaaataag
    15481 aaatattatt ttttctcatc acagttggtt aaattactgc atttaccata cagatataaa
    15541 ctgtggttag tcaattccat tccgtgtttt tcactgattt cacgttggcg acgctccata
    15601 tcaggatctt taaattcgaa caccttacca caatccatac aaataatatg gtcgtgttcg
    15661 tggttcatat ttaattcgaa tactgcttta ttcgcatcga aattatggcg ggttaaaatg
    15721 ccggcttctt caaattggtt taagacacga taaaccgttg ctaaaccaat gtctgagcct
    15781 ttttctaaca gaatcttata aatatcttct gctgcaaaat gttgcatttc atcacgaata
    15841 tcttgcatta atgcaaggat agtcaaacga ggctcggtta cttttaagcc tacctctttt
    15901 aaacgtttaa tatttgcttc agacatatat gccacctatt tatctttatc caaaatagtt
    15961 attatgcgag ttggtctaag cacatttctt ctttcaactg ctcacaccat ttattaacac
    16021 gttcagtggt taattcaggc tgacgatctt catcaataca taagccgaca aaagtatcat
    16081 catcaactaa ggcctgagaa acctcgaaag tgtaaccggc agttggccaa tgaccaacaa
    16141 tcacaccacc atttggctct accacatcac gcacagtacc cattgcatca cagaaatatt
    16201 ctgcataatc ttcctgatca ccgcaaccaa aaattgcaac gactttgccg ttaaaatcaa
    16261 tctcttttag ggtaggcata aaatcgtccc aatcggcttg cgattcacca taataccaag
    16321 ttgggatccc aaacatcaga aaatcgtatg cttcaatatc ttcttttgtg cttttggcaa
    16381 tgtctcgaat atcaattaat tcagccccta attttttctg aatcattttt gaaatatttt
    16441 ctgtattgcc tgtatcgcta ccgtaaaata aacctacaac tgccattgct actacctatt
    16501 tgtgagataa ttatttagaa ttgtttcaat taactgcccg cgtgaaacac cttgttcaga
    16561 cgcctgttcc tctaataact ttactaaatc cgaatgcagt tttaattcta cccgttttaa
    16621 accggaagat ttatctcgtt ttagttggtt acgtttattg attcgaagtt gttgttctct
    16681 atcaagagga tttgtacgag gacgcccaac ttttggtaca gtcgcaaaca gatctaaggt
    16741 tatacaatct gaatcttgtt ttgccatttt gttttactat tgggctttag ctaatcctca
    16801 gttttaatga gaatgataag ctacttttaa agtgtgaact atatcaaaag ttcaatcatt
    16861 tgaaaagtaa attacaggca aaacaagcgg tgtttttagg tttaaaattt gcaaaaatca
    16921 taaattacac attatgagtt atgatttttc tgaagcgtga aattagctta taatgaaacc
    16981 gaataacgtt atgaaaaagg agatagtgtg tcgaatatcc atttagcgat tgccgctgat
    17041 tttacgctgg cagaaaaatt acttgaagca ttagcaaatc aagatttagg gattgaaaat
    17101 atttcagccg ttgagcttga gccgtttggt gaagagcaga atttacgctt tggggcaaaa
    17161 gcagtcgcac aatatgcgtt agatgaagta aattgggcgg aatttagcca tgttctattt
    17221 gccggcaaaa tggcacaagc ggaagtgttg gcagaagcgg tgaaagccgg ctgtgtgatt
    17281 ttagatttat acggcattac cgcactcatc ggcgatgtac cggtagttgt gccaagtgta
    17341 aatgatgaaa atgtcgcaaa tttgcgtgag cgaaatatcg ttgctttagc caatccgcaa
    17401 atttcacaac tggcgttagc cttaaagcca ttgttgaacg agccgttaaa acaggtgtgg
    17461 gtaacctcac ttttaccgtc tgcctatttt ggcgatgaaa aagtcaagga gcttgccgga
    17521 caaactgccc gtttgttaaa cggcattccg tttgatgaaa atgcggaacg cattgccttt
    17581 gatgttgtgc cggctaatgt gcaaggagaa gagaaaagtc tgccgttctc aaaagccttt
    17641 gaactgcaaa ttgcaaaagt tttaccaaat ttgaccgctt gtactacctt ccacagcgtg
    17701 caagtgccgg tcttttatgg ggtttcccaa atggtgtcgg tgcagtctga atatcagtta
    17761 gatgctaatg tgttaagtga agcttggaaa gccgaaaatt ggctgaattt taatgaaaat
    17821 tcagtgatta cagcggtgaa aaatggcgaa aacgaagagc aaaatgcgtt agaaatcagt
    17881 cagttattgg cgaaatccga acaggaagtg cagttctgga cggtcgccga tgaacagcgt
    17941 ttcagtctgg catttttagc ggcgaaatta ctaaaattag ttttagcgta ttaagtgctt
    18001 gcaaaagtat ttattccgtg ataaaaatcg tcaacgcccg agcaaccgat tgcttgggcg
    18061 ttgtcatttt gtttaaacac cgaaggtttt atgttagaaa aattatttca gctcaaagca
    18121 aaaggcagta atgtaaaaac cgaaattatc gccggtatta ctaccttttt cacaatggtt
    18181 tatattgttt tcgtcaatcc gtctatttta ggcgtggcgg gaatggacac ccaagtagtg
    18241 ttcgtgacta cttgtttaat tgccgctttt ggtactatcg caatggggtt attcagtaat
    18301 ttaccgattg ctcttgcacc ggcaatgggc ttaaatgcct tttttgcatt cgtagtggtg
    18361 caaaaattag gttactcgtg gcaagtgggt ataggggcga ttttcttagg ctctgttggc
    18421 ttattcctat taactgtatt acaagttcgt tactggttta tgtctgcgat tccacttggt
    18481 ttacgtgtag gtattggtgc cggtatcggt ttattcattg ccctaatcgg ttttaaaaat
    18541 atgggcttgg tggtgccaaa tccggcaacg cttgtggcac taggtgattt gcacgacccg
    18601 aaagtgttaa tggggatttt aggctttttc atcattgttg tattagcggc gaaaggtatt
    18661 cactcaggcg tgttaatttc aattgtgatt gttaccgctc ttgccttagc ctttgacccg
    18721 gcggtgagct ttaacggcat aatgtctatg ccaccaagcc ttggggcagt tgtggggcag
    18781 gttgatattg ccggtgcttt tgatgttgcc ttactcggga tcattttctc ctttatgttg
    18841 gtaaacctgt ttgactcttc cggcacctta attgcggtga ctaccaaagc aggctttgcg
    18901 gatgaacaag ggcgtttccc gaaaatgaaa caagctctgc tagtagatag taccgctgca
    18961 atggcaggct cttatatggg aacttcagcg atttctacct atattgaaag tggctccggc
    19021 gtttcagttg gcggtcgtac cggcttaact gcggtgttag ttgggatctt attcctatta
    19081 accattttct tctcaccact tgcagggtta gtacctgcct atgcaactgc gggggcattg
    19141 gtatttgtag gaattttaat ggcatctagc ttaattgaag taaaatggga cgatttaact
    19201 gaagctacgc cggcatttat tactaccgca atgatgccgt ttacttactc catcactgaa
    19261 gggattgcat tcggctttat cagctactgc gtaatgaaag cctttacagg gcgttggaaa
    19321 gaaatcaacc tttctgtttt agtggtttca cttctcttta ttgctaaatt tgtgtgggtg
    19381 ggttaagctc taccccctct ccctgatttt tcttctaaac gaagaaaaat ctatccctct
    19441 cccacaaagg ggagagggta tttgattcat tatctatgtg tttcgtgtat tccgaggtaa
    19501 aacaatgtct aattcagttc aaaaacttct ttttatcatc aattctgctc cttacggcaa
    19561 tgaaacgttt ttcagtgcgt tgcgtttggc attacaaatt caagaacaac ataaagccaa
    19621 tacggaaatt aaacttttct taatgtcgga tgcagtcacc gcagggctgg caaagcaaaa
    19681 tccggcagag ggttatcata ttcagcaaat gctggaaatt ttaaccgccc aaggggcaaa
    19741 cgtaaaatta tgcaaaacct gtactaatgc tcgagggatt acagatttgc ctttagccga
    19801 tggggtagag attggcacat taattgaact ggcagattgg acaattcaag cagataaggt
    19861 actgaatttt taatgcaaaa tattgatgtt gtggtgattg gtgccggtgc ggcagggctg
    19921 ttttgtgctg cccaactggg gcaagctggc aaaaaagtgg tggtgttaga cagcggtaag
    19981 aaagtcggac gtaaaatttt aatgtctggc ggtggttttt gcaattttac gaatttagac
    20041 gtaagtgccg gaaattacct tagccaaaac cgccattttg tgaaatccgc cctttcacgt
    20101 tatacccaat gggattttat ttcgcttgtc agccactatg gcattagcta tcacgaaaaa
    20161 gagctagggc agttgttttg tgatgaaagc tcgcaacaaa ttgtcgattt actacaagca
    20221 gaatgcaaca aaggcaaggt tgagattctg ttacggcaag cggtcatttc tgtggaaaaa
    20281 gttgcaaatt tttttgaaat ttcgaccgct tgtggcaagt tccaatccga acacttagtg
    20341 attacaaccg gagggctttc aatgccggct ctcggggcaa gcccttttgg ctatcaactt
    20401 gccgagcagt ttggtattcc tgttgtgcca ccacgtgcaa gccttgtgcc ttttacttgg
    20461 aaagagagcg ataaatattt tgccgagctt tccggcattg cactgccgat tactgtttcc
    20521 gccaatggca aaagttttag caatcagatg ttgtttacgc acagaggctt atccggcccg
    20581 gcaattttgc agatttccaa ttattgggaa ttgggggaaa cggtagagat tgatctgcta
    20641 ccttcgcagt ccattaccga tatattgagc gaactacgcc aatcttcgcc gaaattacag
    20701 ctaaaaaccg tattatctcg ttatttacct aaaaaattgg ttgaagtttg gctggaacag
    20761 aaattgctga ccgataaagt gattgccgat ttgagtaaaa aagatctgac cttattagag
    20821 caatttatcc accattggca tttcttgcca aacggcacgg aaggctatcg tacagcggaa
    20881 gtaaccaaag gcggtgttga taccgactat atttcatcta aaacgatgga agcgaaaaat
    20941 acagcagggc tttattttat cggcgaagtg ctggatgtta ccggctggct tggtggttat
    21001 aatttccaat gggcgtggtc atctgctttt gcctgtgcag aagggattat tgaaaaaagc
    21061 aaataactaa aaaagcaaat aactaaaaaa ccaaacaaaa aggcgaacac aattgttcgc
    21121 cttattttat gctgaattat cttgcacgga aaataatgcg tgctttgctt aaatcgtatg
    21181 gagtcatttc aaccgttact ttatcaccgg ttaaaatacg aatgtagttt ttacgcattt
    21241 tgcctgaaat atgtgcggta acaatatgac cgttttctaa ttccacacgg aacattgtat
    21301 ttggtaaggt ttctaaaatc gtaccttgca tctcaatgca atcttcttta gccatttatt
    21361 cctctttaaa gttttaattt ttatatgatg ccattcggcg aaaaacggcg gatattatac
    21421 gcttattcgc tcaaattaca atcgtttatc catttgagtg taaactattt acgcttaatc
    21481 caacggcgac gtgagtgaaa acgctgggtt tgggttttta cttgactcat aagtggtttt
    21541 gggcttatct gtacatgatg aattttacga cgaaaatagt agttaatgct acttgccaac
    21601 aatatacctg tgagtagcaa aataattatt tccccataaa gttgatgaaa ttgttgctct
    21661 actcgtgctt tagtagtttg cccatattct gcatcaaacg tgacgcgtaa aaagccaacc
    21721 aacgcctgtt gagaaaatat tggctcaaca atttgctgag ttttggcaga ttgctctgaa
    21781 tcgagcaata cttttaaatc tttcgcattt tggctttgag ccagtagcac gccatttggt
    21841 gaatagatat tggcatcaat aataaaatct tctttggcaa aactatccaa cgcatcaacc
    21901 agctcatcgg ttttggcatt tttaactaac aaaaacgaaa aaatattcgc ttgctggcga
    21961 accaataggt gtgaaaggtt tgatacttga ttaatgctgg ctaattgtga gcctagctta
    22021 aattggttta cgcccattaa aataacagcc acgatcccac agcagagtag cgtaatccct
    22081 gccagcaaaa gcgttttcgt tattttttca cgactaatgt acattgaaat tccctcaaaa
    22141 tgatgcgtga ttgtagcacg cttttctgtt agattagtgc agtaaattta aacaacctaa
    22201 aataagacaa tgacaaacac aatttttatc tattcaaaaa ccttaaacga gcgtgaaatt
    22261 gaacagtttt cacaacaaac ggcagcaatt ttgctgaaac aagcggtcta tttagactac
    22321 aaaattgcat ttttttccac aaatttaacc gcttgcgagc tgcgtgaaac ggcacagaaa
    22381 atcaatgcgg atattagcga tctcactatt attccaacct taaaccaagg cggtttgcta
    22441 ttaatggata tggattccac cgctattaaa attgaatgta ttgatgagat tgccaaactt
    22501 gccggcaccg gcgaggtggt gtccgccatt actgccagtg caatgcgggg cgagctggat
    22561 ttcgagcaaa gtttacgcaa gcgagtcggc acgctggaaa atgcatcgga aagcattttg
    22621 caaaaagtgc gggaaaatct accgcttatg gacggctttg agcagatggt tgctattctt
    22681 aaggaacacg gctggaaatt agcgattgcg tccggtggat ttgattactt cgccgattac
    22741 ttaaaacaaa aatacgggtt ggattttgcg gtctctaacc aactggaaat tattgacggt
    22801 aaattaaccg gcaaggtgtt aggcaaagta gtggatgctc aacataaagc cgatacctta
    22861 aaaaatttgg caacaacctt taatattcca caaaatcaat gggttgcagt aggcgatggg
    22921 gcaaacgatc tgccaatgtt aaaaaccgcc agtttaggcg ttgctttgca cgctaaacca
    22981 aaagtgcaag cacaagctga ttttgtggta aacttcgggg acttaacggc attatgttta
    23041 ttacttaatg ccaatcattt atttcaacat taattgagag gaacaacaat gccatcattt
    23101 gatattgtat ctgaaatcac gatgcacgaa gtgcgtaatg cggtagaaaa tgccaatcgt
    23161 gtattaagca cccgctacga tttccgtggg gtggaagccg ttattgagtt aaatgaaaaa
    23221 aatgaaagca ttaagctcac gaccgaatcg gatttccaat tagagcagtt aattgagatt
    23281 ttaatcggct cttgcgtaaa acgtgggatc gagcatagtt cattagatat ccctacagaa
    23341 agtgagcatc acggtaaact ctattccaaa gaaattaagc tcaagcaagg gattgagtca
    23401 gatatggcga agaaaattac caagctgatt aaggattcta aaatcaaggt tcaagcccaa
    23461 attcagggtg aacaagtgcg tgtgaccggt aaatccagag atgatttaca agccgcaatt
    23521 cagctagtga aaggggcaga tttagggcag ccattccaat ttaataattt ccgtgattag
    23581 caattcctgc aattaatgat gacaagtgga aaaattcagc aaaatttgac cgcttgcatt
    23641 aataattcaa cataaaagga agagatgatg agcgagcaaa cagaaaagaa aggctggttt
    23701 aaaaaagcac ttgagaaata tgatgccttt tgcgatgagc taggggtaaa tcaaggtgct
    23761 tgccgaggtt gtgtccctgt ggtgaagttt gaccctgaac cggaaaaaga gcagccagaa
    23821 aaatcagaaa ataaaacata gaaaaaatgc acaatgggaa gatacattgt gcattttttt
    23881 atggggtttt taattggcgt gatgatgggc aaaatattgc ttaactccgc catctttctt
    23941 gcagggattc tgaatatcag tagagtaact accgttaaaa caaagagcag tagcattcga
    24001 tggtttaatc ttttcctgtt tagttagggc tggcggttga gtattggttt cactaatata
    24061 gatcgtttta ggttgagaat agtctatatt tttgtcgcca tttacgactt gaacgggggt
    24121 gttcgatctg caagctacaa ccgatgctga agccaatgta agtataatga tattgtgttt
    24181 tttcatgggt aatttccgtt tttatatttt taattgagag aatgttaaaa agggctgatt
    24241 tctcaaccct taaagttatg ccttaagcat ttttattaaa agtttgtcct aactgaattt
    24301 catcatttaa tacaggaatt aactgctcta gttgatcttt ttcaaattcg ctgagattgc
    24361 cgataggtag aactttttcc acaccatttg tacctaaacg aatcgggtaa gcaaagaatg
    24421 ccggagaggt ttcgccattg gcattatcta cataagcata acgaatgaca tcttccccga
    24481 ttaaggctct cactaaacca agtgcaaatt ctgctcctgc ttgagccata gataaggttg
    24541 ctgagccacc acctgctttt gcctcaacca cttcagtacc ggcgttttgg atacgatgag
    24601 ttaattgctc gatttgttct tgagtgaact caagttttaa gccatttact gttgcttgtg
    24661 aaagcagtgg aagaatagtt gtgccggaat gtccgccaat cacaggcact cttacatatt
    24721 tcacattcac gtctttcgct tcagccacaa aggtattcgc tcgaataaca tctaatgttg
    24781 taacaccgaa aagtttattt ttgtcataca caccggcttt tttcaatact tctgccgcaa
    24841 tcggaataat ggtgtttacc gggttagtaa taattgcaat gcaagcttta gggcaaactt
    24901 tcgctgcttt ttcgactaag ttatgcacga tagtggcatt cgtattgaat aaatcggcac
    24961 gtgtcatccc cggcttacgg gcaacaccag cagaaataac gaccacatcg gcatctttta
    25021 gtgcctcagt cggatcttca cctgcaaaac cggttacttt tacatcagtt ggaatatggc
    25081 ttaaatccac tgcaattcct ggagtaacag gggaaatatc gtaaagagat aattcagatt
    25141 tagccggtaa attgagtttt aataataagg cgagtgattg accgattcca cctgcagcac
    25201 ctaaaagggc aactttttta ctttgacaca taaaatttct cctaaatgtt atggaagttt
    25261 agaccaattt agtctaagcc aattttttgg gcgattcaaa cggcaaatct catttttgag
    25321 acatagagca aatttttagc tgatttttat gggttttatt gatttatttg cataaataag
    25381 caagaattat gaatattttt aagtttttgt gaataagagt gtgaaagtgg acaagataga
    25441 tagtttatca gaagcgttta aatcgctgtt aaaggaagaa aaattcggct cgcaaagtga
    25501 aattgttgcc gcactacaag agatgggctt tgataatatc aaccaatcca aagtttctcg
    25561 aatgttatca aaatttggtg cagtcagaac ccgtaatcct aaaatggaaa tggtgtatca
    25621 gctaccagtc gaattaagtg taccgactac ctccagccca cttaaaaatt tggtggtaga
    25681 tattgatcat aatgatgcgt taattgtggt caaaaccagc cccggtgcgg ctcaactgat
    25741 tgcacgtttg ctcgattcaa tgggtaaagc cgaaggtatt ttaggcacta ttgctggcga
    25801 tgatacgatt tttataacgc cggtacgcaa tatgcaaatt gaaaaattgg tgaagaatgt
    25861 gacacagtta tttgaaacat cattatagaa taagtaaagg aggacttaat gttctcctta
    25921 ttttttagga gattattatg cacattttta taacaggtgg tacgggtttt attgggcgtg
    25981 aattaatcca gcaattaaaa tctgaaaatc accactttac acttcttact agagatacag
    26041 aagcgaaaag tggtgattta cagattaatt attgctattc acttgatgaa cttgttgatt
    26101 taaatgattt tgatgcagta attaaccttg ccggtgagcc gatttttgat aaacgttgga
    26161 cagacgaaca aaaacagaaa ttgattgaaa gccgggttaa cctaacgaat aagctcagtc
    26221 aattaatgaa tgcaagctct aaccctccgc atacttttct ctccggttcg gcaatcggga
    26281 tttatggcga tttgcctcct tctgcaaatt tttatacaga atcgactgct tgttatcaag
    26341 attgctttac caaccggctt tgccaacagt gggaagccgc tgcactaaaa gccgcaagtg
    26401 ataaaacccg agtgtgttta attcgtaccg gcacggtatt ttcgcccgaa ggcggagcat
    26461 taaagaaaat tttaccgctt tatcgatgcg gattaggcgg aaaacttggt tcaggcaaac
    26521 aatattgggc gtggatcagc cgccgggatc acgtacaagc ggtcattttt ctgctcaaaa
    26581 atgcaaattg ttcgggtgct tataattttg ttgcaccaaa tccggtgaga aatgaagaat
    26641 ttaatcgtat tttagcgaat gctgttaatc gcccggcatt ctttactgtg cctgaatttg
    26701 ccttgaaatt aggcttaggc gaacgagctt gtttagtctt agataatcaa cagctcattc
    26761 cggaaaaact actcgcagcc agttttgtat tccaagatcc gattttaacc gagaacgttt
    26821 tcttaaaccc ataatttagg ctataatgct gtataaaagc acagattaaa aggtgattat
    26881 ggatttctca ttattattag acggtttaaa tgacaagcag agggaggcgg ttgctgcccc
    26941 gattggtaat tatttagtgt tagccggggc gggttcgggc aaaactcggg ttttaaccca
    27001 tcgcattgcg tggctgattg gggtggaaaa tgtgccggaa tccaatattt tggctgttac
    27061 ctttaccaat aaagcggcgg cggaaatgcg acatcggatt gagtacactc tttcccaatc
    27121 gggcgataat cgattgttcg gaatgtgggt tggtactttc cacagcattg ccaaccgctt
    27181 acttcgttcc cactatttag atgcggattt accgcaagat ttccaaatta tggataccga
    27241 agatcagcaa cgtttactca aacgtttact gaaactgcat aatattgatg agaaacattt
    27301 tccgccaaaa cacgttgcgt ggtatatcaa cgcccaaaaa gataaaggca aacgggcaaa
    27361 agatattgat caccataacg atccgaatga aaaaaaattg gtggagattt accaaatcta
    27421 tcaagatgcc tgcgaccgag ccggtttgtt agattttgcc gagctgttga ttcgggctta
    27481 tgaactattc aaaaccaaac caaccatttt gcaacgttat caacaacgtt ttcagcaaat
    27541 tttgattgat gagtttcaag acaccaacaa tattcagtac gacttaattc gtttgcttgc
    27601 cggcgatgtc ggcaaagtga tgattgtcgg cgatgatgat cagtctattt atggttggcg
    27661 tggggcacag gttgagaata tccaacgttt cttaaatgat tatgacaacg ctcaaaccat
    27721 tcgcttagag caaaattacc gctctaccgg caacatttta agctgtgcca atgaattaat
    27781 tgccaataac gataaccgct taggcaaaaa tttatggaca gatagcggtg atggcgagcc
    27841 tgtggatatt tactgtgcct tcaacgaact tgatgaagct cgctttgttg cctcgcaaat
    27901 caagcaatgg aaagaagacg agggtgattt ggcggaatgt gcggtgttgt atcgcagcaa
    27961 cagccaatct cgtgtgattg aggaagcttt aattcaagcg aatattcctt atcgcattta
    28021 cggtggaatg cgattctttg aacgccaaga aattaaagat gctctggctt atttacgctt
    28081 aatcgccaat cgtcaagacg atgcggcgtt tgaacgggtg atcaacacgc caaccagagg
    28141 cattggcgat cgtaccttag acacactccg tcaaattacc cgtggtcgcc aaattacgct
    28201 gtggcaagca attcaagtgg cggtgcaaga agaacaactt tcagggcgtg ccacttcttc
    28261 cttattgcgt tttgtagagc tgattaatgc tcttgatcaa gaaaccgagc agatgtcgct
    28321 tgccgaacaa accgattttg tgattaaaaa atcgggttta tatgaaatgt ataagcaaga
    28381 aaaaggcgaa aagggcgaag ttcggattga aaacttagaa gagttagtta ccgcaactaa
    28441 gcagtttgtg aaacctgacg aagcggaaga gctgaccgat cttaccgcat ttttaaccca
    28501 cgcctcactt gaggctggag aagcccaagc ctcgcaacac gaagattatg tcgaactgat
    28561 gacgctacat tccgccaaag gattggagtt tccccgtgtg tttattgtgg gcgtggaaga
    28621 agggattttc ccaagcggaa tgagctttga tgaaggcagg ttgcaagaag aacgccgttt
    28681 ggcttatgtc ggcataaccc gagctaagaa aaaactgacg attagctatg ccgaatcaag
    28741 acggctttat ggtaaagaag aacgccacgt tccgtctcgc tttattgctg aattacctga
    28801 agagcatatt cgagaagtga gattgagagg ctcaattaac cgagcggcaa gttttaacca
    28861 agctaattca tttgcaaaaa atccgacaaa aacgaccgct tcctttttaa acgatgatac
    28921 ttggaaaatg gggcagaaag tgaaccacgc taaatttgga caaggcacga ttattaatgt
    28981 ggagggctca ggtgaagcca cccgtttgca agttgccttt gtcggcaacg gcattaaatg
    29041 gctgattgcc aaaatggcaa atttagagag gatttaggcg aataaaaagt tttttgcagg
    29101 aatatagata taaggggcga gatatattgc cccttaacct taaactaagg gtaaataaaa
    29161 ttaaataatg caagctagat ataatgtaaa gtatcagaaa taagatatta atttaagata
    29221 aagaatagat ggctggggta ctaggattcg aacctaggga tgccgagatc aaaacccggt
    29281 gccttaccgc ttggcgatac cccaaaagaa aaaactaact tacgttagct tatatagatt
    29341 tgaatgtttg aaattaagtg gctggggtac taggattcga acctagggat gccgagatca
    29401 aaacccggtg ccttaccgct tggcgatacc ccaacactaa tttttgttaa tcgataaatg
    29461 gtgcgggacg agggacttga acccacacac ctcgcggcgc cagaacctaa atctggtgcg
    29521 tctaccaatt tcgccagtcc cgcaatggtg gctacagcga gattcgaact tgcgacccca
    29581 acattatgag tgttgtgctc taaccagctg agctatgtag ccatttgcgt tcaccatatc
    29641 ggtcaacgga gtgcattatg ctgattttag ggctttccgt caaatacttt ttttaaaaaa
    29701 tttgaatttt tgattcgctt gtatagttat tcgtcgtttt ggcttaaatc tagcattttt
    29761 tgtttataaa ataatagctt atattctgct atttcaccgt ttgcatttct aattttaatt
    29821 gagccagtac aggctcaaca tcggggaatt gcccttccca caaagaaaac gcaaacgctg
    29881 cctgtccaac caacattcct aatccgtctt ggcacgctgt tgctccacaa cgccttgcat
    29941 aattgagaaa aggagtttgc atattggggg catattgcat atcgtaaata ttcgccgatg
    30001 ctataacaga ttcaggcaat tcaacatatt tgccttgcag accgagagag gtggcattga
    30061 cgattaaatt aaaccgttgg tttgccaaat cgcttaaaca agcggtctga attttgccaa
    30121 attttgcaaa tttttcggct aaaacgaccg ctttctcctg cgtgcggtta tatagagtaa
    30181 tctctaaccc cgctttaagt aacggaagta atacgccttt ggttgctcca cctgctccaa
    30241 gaattaaggt tttatgccct ttttgtaacc aacctagccg ttccaaatca gaaactaaac
    30301 cggccccgtc ggtattatcg gcatataacc gtccatcttc taagcgttta agcgtattac
    30361 acgcctgtgc caacaaagcg gtttcgctaa attcatctgc caatttaaag gctctttctt
    30421 taaaaggggc ggtgatgttg caaccttttg ctccagaagc gaaaaaatcg gctaattgtt
    30481 gctcaaaagc cgtttcatct cctaagttag cgatatattc aatgttgcgt tgggtttgta
    30541 aagcaaagag ttgatgaata cggggggatt tactttgagc aatcgggttg ccccacacgg
    30601 catatcggtt catttcggct tatccttgtc taaaaatctg ttggctgaaa atatctcgaa
    30661 tttcggaagg gttttctcta cctagcgtgt ctgcgtgtaa tacaggaaaa tcttgaccaa
    30721 actgatcgat gacttctttt gcattgcggc aaggtggttc tccgctcaaa ttggcactgg
    30781 tagaggtcaa cgcaacgccg cttgcctcac acaactgaac caccgccggc acattacata
    30841 aacgtacggc aatagaatca aatttgccag tgaggtaact tggcacagta tttttaaccg
    30901 gtacgatcca agtaattgcc tgctcgccaa tatggcttag gcgttgccaa gcctgttccg
    30961 tcattcgagc ttcatcaata tagggaagaa gatactttaa atcagaagcc agtaaaatta
    31021 gccctttttc ctcagggcgt tgttttaata cgagtaattt ccttaccgct ttttcacttt
    31081 gtggattgca gcctaagcca aaaaccgctt cggttgggta agctacaact tcttcttgct
    31141 ttaattgatt aactatttct aaaaaattat tcattcggtt ttaattctgt ttggtgctgg
    31201 caacttttgt tagcacaaat ggtgaattgc ttgcccttaa tttttttgat tgtagcgagt
    31261 tcacaaccac atttttcaca caagtggtta atcggtcgag ttgctaatgt aaatttgcaa
    31321 ttagggaagc ctatacaacc ataaaatatt ttgcctgaac gcccttttct agcaatcagt
    31381 ttatgttgct tgcattcagg gcaatcaaac tcttcttcaa cctcagcttc ttcgtgtacg
    31441 atgaagtggc attcagggta atggctacag ccgataaaaa taccataatt gccttgtttt
    31501 aattggaggt ttccgccaca ttcagggcaa agttcatcta attgcttaat aatatgaccg
    31561 gcttgatgta atggcttaat ataatcacat tcagggtaag ctgaacaacc caaaaataac
    31621 ccttttttgc cctgcttaat ttgcaacggc gagccacatt gtgggcaagt ttcggtctgt
    31681 ttggttgatt tgaaaagtac catattgatt tgctaaataa gcgtaaattc aatcacaaaa
    31741 aacgcattgt cattcggata aatctcccga ataacttgtt tcaattcggc taagctcata
    31801 ttttcttgtt tagcgtgttg ctcgtttaat tcatcaaaca ctataggtgt taccgatagt
    31861 actttaatat tggcgaaaaa tctatcggtt tcattagtaa aaaccgctaa ttcttggttt
    31921 ggttgaaaat aagattctga cttgtctcga atcgtaattg tttttttacc gcttaaaata
    31981 tcggcttcaa atcggctgaa aaaggtaatt ttctctctat tcatattcat cgctactgta
    32041 atccagagcc attaaatgac taaaatgatc gttataaaaa ccacggctaa ccataaatcg
    32101 ccacattttc tgctttgctt tcagatccca tacaagcggt cgttttttct caaaaatttg
    32161 ctcagctaat tcaaaccaat ccacttcggc gttttctaat tcttggttaa ttaaccaatc
    32221 ttttacccct ttaagtttta gctcttgctt taaacggcga ggcccaatgc cttgcattga
    32281 acgataacgg ataaaagtgg tacaaaagcg ttcatcactt tgccactgat tcgcttgagc
    32341 tttttcaatc gctgcatcaa tctccgtgag ttcatactct ttttgcttta gtttttgccg
    32401 aagctcttgc tcgctgtaat cacgctttga aagtaaatat agcagataat taaccgctgt
    32461 gtatttattt gttttagtag tagatgttgt catttatcgg ttataaataa aaatgcgatt
    32521 ttcacgttga gcgaaaaccg cataaattta attagagttc ttcttcacta aattcatcat
    32581 ctgcattgtc tgcattttca gaatctggag tagccgtaaa agttgggttt gaaatgagta
    32641 gatttcgaat atcttgctca attttactcg ccacttcagg gtgttctttt aaccatttga
    32701 tggcattatt tttaccctga ccgattttct ccccttcata agagaaccaa gcccctgctt
    32761 tattaatgaa gccgtgagat tccgctaaaa tgagtaattc attcatacgg gcaatgccct
    32821 caccgtacat aatatcaaat tggacttcac ggaacggtgg agcaaccttg tttttcacaa
    32881 ttttcacttt tgtttcgcta ccgataacct catcaccgtc ttttactacg cctgaacgac
    32941 gaatatctaa acgtactgaa gcatagaatt taagggcatt accaccagtt gtggtttcag
    33001 ggttaccgaa cattacccca attttcatac gaatttggtt aatgaaaatc accaagcagt
    33061 tggtcgcttt gatatttgcg gttaatttac gcaatgcttg tgacattaaa cgagcttgta
    33121 agcccatatg ggaatcaccc atatcgcctt caatctctgc ttttggtgta agtgccgcaa
    33181 cagagtccac aataatgaca tcaaccgcac cggaacgaac taacgcatca caaatttcta
    33241 atgcttgttc gccattatcc ggttgtgaaa ttaataatcc atctgtatct acccctaact
    33301 tacgggcgta aataggatca agtgcgtgtt cggcatcaat aaaggcacaa gttttaccat
    33361 ttttttgggc ttgagccacc acagataaag ttaatgtagt tttacctgaa gactccggtc
    33421 cataaatttc cacaatacga cccattggta aaccaccaat gcctaatgct gagtctaaac
    33481 caagagaacc ggttgaaact gcttcaatat caagggcttg agtatcgcct aacttcataa
    33541 ttgagccttt gccaaattgc ttttcaattt gagctaatgc ggctgccaac gctttttctt
    33601 tttgttccgg atcaatctgt ttaaccggag tgttcttttg actttttttc tctgccatat
    33661 tctatccttt gtaaactttt atctaaaagc aaccgcttgt tgctgcaaaa taactgtata
    33721 ttattatagt atttacttat ccagttgcaa gcattttttt aggattttcg atcaagatca
    33781 caaaaataaa tttgcgagca aggcaatgcc cttggttcct caaagggatt aagagcatta
    33841 atcaacataa ttttttcata ttgatgcaaa tcttgcttgg ctattttggc taaaacgact
    33901 ttcccttcat caagcaattt actaagctga gtgcctttga gcaaataatg ttgcgggcta
    33961 taccagattc cttgttttag gaacagtaaa ttgccgatgg agcaatcact gacgtagcca
    34021 ttattgagaa taatcacctc ttcattttgt aaaataggga gcaaatcaaa ccgcttgcgg
    34081 tcgctaaatt tgaggtgata atcccaattt tccacctcaa ccaagcgaaa acgttctact
    34141 tttttgggcg aatagataaa aaatttcagc tcaaattctg ttgcgttgta atctattcgg
    34201 caacgtactt tgccccgttg agaagcctct ggcacaacta aaatatcagc aaggctaaaa
    34261 cgaggttcac agccaaaata ttcttgtgtt gcttgctcaa aacgttgttg atgatactgt
    34321 aagttctgaa ctttgccgtc aataatcgaa agggtttcaa atagcggaaa tcggcacata
    34381 gactttctct aacagttcat tatattcatc agttaacaca ctttgtgagg taatgccacc
    34441 accactatga aacacaagcc cgtttgaggt ttgagcaatg taacgaattg ccaccgcact
    34501 ttctaagctc tcgccatcaa aataaccaaa aataccggtg tagtaacccc gttttcctaa
    34561 ttctgcttgc tgaataatcg aaaccgtttt ctctttcggt gcaccgctaa tggagccggc
    34621 aggtagtaat tttgccaata tcgaaccgat attttcttgc caattttcac ctaattcgcc
    34681 acagatctcg gaacttgtct gcaaaattgc ccctcgatgg gtttctactt tttccacata
    34741 acggtattta gtcacttcaa tatttttcgc caccaacgcc aagtcatttc ggatcaaatc
    34801 cacaatggta ttatgttcgg taaactcttt ttccgaagcc attaatttct gctcggcatt
    34861 ctcctcattt gcattaattg tgcctttcat cgggtaggaa aaaatgcggt tattttcaat
    34921 tcgcacaaag cattcagggg aaaaacagac gaacctgcct tgcaaataac atttatattt
    34981 tgctttgctg gcggcaaaaa tttccgccaa tgaataattg gtttcaatgg cagtcgggta
    35041 gctcaaattc agcaagtagc tattgccggc ttgaatttcc tttttcacta attcaaaccc
    35101 ggtttggtat tcgctaaacg gaatcggatt tgccgataat tcaaaagctt tagtcggttt
    35161 tttaaccggc ttttcgagat tcgatttgca aaaaaattca aaaaaaagac cgcttgcgtg
    35221 agcctgttct agcggaaaaa taagtggctt tttctgctca aaatcaatta aaaagaaaaa
    35281 agggcgtttt gcttgcccgt agtgattggc ttggtgaata aaatcttgca tagaaaacac
    35341 aatggctgaa attggctgaa tcatcaaaag ctctgttata atgcaaagca atagatttga
    35401 aaagcatttt ttaaaaaagg ttttaccgat gaacaacacc attcattttc aagaaattgg
    35461 gatctacatc gcccttgccg tttgtgtgct ggtaggcgtt tatctctttt tcttgaaatc
    35521 ccgttatcag cgagatgcct acgaattaag ccaagatctt ggcaaaatca ccgaaaattt
    35581 tgaacaaatt cagcaaaaat atgaggtgtt ggctcaagaa aaaaatcagc ttgagcagtg
    35641 ggcaattcaa caacagacca aatatgaagc agtgagtgaa cgtttaaacg agcgagatgg
    35701 gcaattgcaa cgattccaac aaaaaatcga acttgccgaa cagcaagaaa accagctgga
    35761 acgctatatt aatgagctaa aagaacgtgt gggttcttcc caagcaaagg cagaaagttt
    35821 ggaagaacag ctacaattta gccaaagttc actctcaact aaagagcggg aaaatcaagc
    35881 gttatttagc cgtttaaacg aggtacaaaa cgagctgacc gaactgcgta ctacgctttc
    35941 ggaaaaacag gcaaattttg aagcacaaca acgcaatttt attgaggtaa aacaacagct
    36001 taatgtggaa tttcaacatt tggcacaaca aattcttgac gaaaaaagca agcgttttag
    36061 cgaaaccaat caaagctcgt tagaagctct actgaagccg ttcaaagagc aaattgaagg
    36121 ctttcaaaaa cgggtgaatg aggtacatag tgagtcgctc aaaggctcgg caaatttaga
    36181 ggctgaaatt aagcgggtgc tacaaattgg cgtttcaatg tcggaagagg cacaaaatct
    36241 ggcaacggca ttaaaaggca ataataaaat tgccggcaac tggggcgaag tacagcttga
    36301 aagtgcctta caatctgccg gtttactcgc aggcgagcat taccaagccc aagagagttt
    36361 tcgtgatgaa gaggggcgac gttttgcccc cgattttgtg gtgcatttgc cggatcaaaa
    36421 acatctgatt attgacagta aagtctcgtt agtagcgtac gatcaagcgg tcagatcaga
    36481 agaaaatttt gcaatttctc aagccttaga cgaacattgc cgttcgctac gcaatcatat
    36541 tgagggattg tctaagaaga actacagtgc attattaggc attaaaagcc cggattttgt
    36601 actgatgttt attccgatag aaccggctta tattgaagcg atgaagcacg atccgcaact
    36661 gtttaacttt ggctatgaac gcaatgtgat tttggtttct cacaccacct taatgccgat
    36721 tttacgcacg gtcgccaatt tatggcggat tgaacgaggc aacagcgagg ctcgtgaaat
    36781 cagcgaaaaa gccggcgaaa tttacaacca agtgtgtgcg gttgccgatc ggttagctaa
    36841 attaggtaac acgctaaata ccgcaaataa tcaatacaat caaaccgtta cctcgttagt
    36901 gggacggcaa ggcttactgg gcaaagtgga acgattccaa catctttcaa gcaaagcaag
    36961 ccaaattgtg ccgcaggttg agctgattga aaatgaggtg gatactatta aattggaaat
    37021 ggtatcgaga gaattattgg aagaatagtc aaatctcttt attccctaaa attgtagggg
    37081 cgggtcctgt gcccgcccga tatttcaaac aatatttttc gggcgggcac aggacccgcc
    37141 cctacaaaaa tatggggtga tttgaaatac taaagaaaat aataaaatgc taaaaaaact
    37201 attaatcatc gacaaccacg actcttttac cttcaacttg gtggatttac tccgtaagct
    37261 tgatgtgccg gcgaaagtgg tgctggttga agagcttgac ctcaatgagg tggagcattt
    37321 tagccatatt ttgatttcgc ccggccctga tgtgccgaga gcctatctac aaacctttgc
    37381 gatgttggag cgttatcatc aaaccaaatc aattctaggc gtttgcttgg ggcatcaaac
    37441 gatttgcgag ttttttggcg gcaagttgta taacctaaac gatgttagac acgggcagca
    37501 acgcacgctc actcaaattg agcctaaccc catatttaaa ggtttgccta agcagttgaa
    37561 agttgggttg tatcactctt ggggcatttt gcaaaattcg ttgcaaaata caccgcttgt
    37621 accaaccgca gtttgcgatc aaaatgtgtt aatggcgttt aaacaccaac atttgccgat
    37681 ttttggcgtg cagtttcacc cggaatcttt tatcactgaa tttggtcaac aaatgttggc
    37741 aaattggctt gagattacac aagattttta gcgtgaaatc cgctataatc cgtcagttat
    37801 ttaccctttt aaaatctgta ggggcgaaaa atttttcgcc ttacttaata tgcaagagat
    37861 aatttaaatg aaagattcga ttatcaataa attagaaagt ttaagtgaac gccacgaaga
    37921 actacaggcg ttacttggcg atgcctcaat tatttccgat caagacaaat tccgtgctta
    37981 ttccaaagaa tattcgcaat tagaagaagt ggttggcacc tttaaccgct ggaaaaagct
    38041 gaacaatgat attgaagagg ctcaattatt actcgatgat cctgatatga aggatatggc
    38101 agcggaagaa attgcggaaa ataaagccga aatcgagaat cttgagcaac atttacaaat
    38161 tttattattg ccgaaagatc cgaatgatga atacaacgcc ttccttgaaa tccgtgccgg
    38221 aacgggcggt gacgaggctg gtatttttgc cggtgattta taccgtatgt acagccgtta
    38281 ttgcgaaagc aaacgctggc ggattgaaga aatgtcggca aatgagagcg aacaaggcgg
    38341 atataaagag atcatcgtga aaatttcagg cgaaggcgtt tacggtcagc ttaaatttga
    38401 atcgggcgga caccgtgtac aacgtgtgcc gaaaaccgaa tcacaagggc gtattcacac
    38461 ctctgcttgc acggtagcgg taatgccgga gttgccggaa agcgaaatgc cggaaatcaa
    38521 tccatctgat ctgcgaattg acacctaccg ctcatcgggt gcaggcggtc agcacgttaa
    38581 taccaccgac tctgcggtgc ggattaccca tatcccgacc gggattgtgg tcgagtgcca
    38641 agacgagcgt tcacaacaca aaaataaagc taaagcgttg gcggtgttag cctctcgtat
    38701 tgtacaagtc gagcaggaac gccaagccgc ggagcaagcg gatacccgcc gtaacttact
    38761 cggttcaggc gaccgttcgg ataaaatccg cacctacaac tacccgcaag ggcgtgtgac
    38821 cgaccaccgt attaacctca cggtttatcg tttagacgaa gtgatgaacg gcaaaattga
    38881 cgagctgatc caaccgatta tcactgaata tcaagcggat caattggcgg cgttgtctga
    38941 tcaaaattaa gtcacaagcg gttaggtttt gccaattttt tgtaaaatta gactgcttgt
    39001 ttatatctta gaggaatcct gataatactg aaatatcatg caaactgata acgttacttt
    39061 atctgaatgg caatttgggg agaaaccaaa taccctagcc aaccttgtgc ttgctggcat
    39121 aaagacggct acttgttctg gatattgctt ttataagtta gacaatgagc ctcttccgca
    39181 aaaaggtgag cgacacatag tgttagacag ccaaaattgt cctgttgtga tgattgaatt
    39241 aacttgtata gagcgaaaaa agtggttcga aattgatgaa aagtttgcac ttttagaggg
    39301 ggcggattcc ttcagtgagt gggaaaggac gcaccgaaat ttttttaacg cacagcttga
    39361 acgggcgatt gatgagcagt ttgaactcgt ttgtgaacag tttcatacgg taaacatttt
    39421 ttcaaaaacg tatgcccaat ggtttcggtt tgctgagcag actctccttg aaaatgccga
    39481 gcaagatccg tttttaaacg ccaaatttga tgctaatttg ttgctgcaag cagtcacaaa
    39541 acgctcaaaa tcggccattt ttgctttttc cgaaacagtg ctttctgaac gtgagctggt
    39601 ggaattagcg gaaaaattag ctcgacgtgc caaaggtgag ccgatggcat atattttagg
    39661 ctatcgggaa ttttggtcgt tgccgttaaa agtttcaccg gcaacactca ttcctcgccc
    39721 tgatacggaa cgattggttg agttggcgtt ggaatatgct aacaagcggt tagaaaatca
    39781 gaaaatgttg caaattctgg atctcggtac tggcacaggg gcgattgcgt tggcactggc
    39841 gagtgaatta ggtgagaaag cgcaaattat cggcgtggat ttccaaaatg aggcggtgca
    39901 actggcagaa gaaaatcgcc aacacttggg cttaaatcag gttacatttt tacaaagcga
    39961 ttggttcagt tcactggcaa atcaacaatt tgatttaatt gtctcaaatc cgccctacat
    40021 tgatgaagca gacgaaaatt tgacggtggg agacgtacgt tttgaacctt taaccgcctt
    40081 agttgccgat aataagggat tgagcgattt gcaaaaaatt attcaaaatg caccgcttta
    40141 cttaaagcca caaggggcgt taatgctcga acacagctgg caacagggga atgcggttcg
    40201 tgatttattt gatttaaact tgtgggaaca ggtggaaact gctcaagatt atgccggcaa
    40261 tgaccgagta accaaagcga ttttaaaata aggcagaaaa tggacgatat tattgaagaa
    40321 ttgttaaaag agttgaaaga tccgaaagta accatcagcg aaaccgagct gaaaaagttt
    40381 ctttatcgtg aaattttacg attaactacg ctcattgata ggaatgtaag tgagcaacaa
    40441 gtgtttggtc agatgtctgc gttggtgaaa aaagctcgct ataacgtgaa tggcgaaggc
    40501 gatgaagaga gaattaacca attacttgat ttagtctatc gtgaatgggg ctttcattgc
    40561 tactatgaag actatttcca caccgaaaat ttattgctaa atcaagtgat tcgcaaacgg
    40621 cgtggaatgc cggtttcact tggggcggtg gtgctttatt tagctgcggt attagattta
    40681 ccgatttacc cggttaattt tccgactcaa cttgtgctac gggctgaaat gcgccagccg
    40741 aacggagcca ctaaagtgcg ttttatcaac ccctggaacg gtgaatttct cactatcgaa
    40801 atgctgaata aatggctgga gggtgaaatg ggctttgggg tcgaagtcac ccctgattta
    40861 ttaagacggg cagaaccaca agagttgctg gagagggtcg aaactgtgtt taaaatggca
    40921 cttacccgtg aaggcaaata tgaagaaacc ttacgcttga ttgaataccg cttggcattt
    40981 agtccggaag atccgtacga aatcagagac cgaggaatgg tactggcaag tatggattgc
    41041 taccaagcag cattagaaga tattaattat ttcattgacc aatgccctga agatccttct
    41101 gccgaaattt taaaaatgga agtgaaagga ctacaacaaa aaagccaaga aagtttggtg
    41161 cattaagctg agaagctgcc ccaaaggggc tgagctatga ttaacctagt acggctttgc
    41221 cgtgctaggc agtaaaataa gaaacaagga ctccctatga cagataaaat tgtaaaagtt
    41281 ggcaatattg aagtggcgaa tcacaagccg tttacccttt ttggtggcat gaacgtgctg
    41341 gaaagccgag atatggcact gagagtgtgt gagcaatatg ttgaagtcac gcaaaaacta
    41401 aacgttcctt atgtatttaa agcctccttt gacaaagcaa accgttcttc aatccactct
    41461 taccgtgggc cgggaatgga agaaggctta aagattttcc aagaattaaa acaaaccttt
    41521 ggcgtgaaca tcattaccga tgtacacgaa atttaccaat gtaaacctgt ggcagaagtg
    41581 gttgatgtga ttcaacttcc tgcttttttg gcccgacaaa ccgatttagt ggaagcaatg
    41641 gcccgtaccg gtgcggttat taatgtcaaa aaaccacaat ttttaagccc tgggcaaatg
    41701 gggaacatcg tagaaaagat tgctgaatgt ggcaatgata aagtgatttt gtgcgaccgt
    41761 ggcacaaact ttggttacga taatctagtt gtggatatgc ttggtttcgg cattatgaaa
    41821 aaagtgtcga aaggttgccc ggtgattttt gatgtgactc actcattaca atgccgtgat
    41881 ccattcggtg cggcttccgg tggtcgcaga gatcaagtaa ccgaactggc acgctccggt
    41941 atggcgattg gtgtagccgg cttgttctta gaagctcacc cggatccaaa ctcggcgaaa
    42001 tgtgatggtc catctgcatt accgctgtca aaattagaag cctttgtttc acagatgaaa
    42061 gcgattgatg agttggttaa gagctttgaa gaaattgata cttccaaata aactttctcc
    42121 gcattaaatc ctttcctact ttctttgctt cgccaaagaa agtaggcaaa gaaaggcgac
    42181 cctacttcgc tacttttctt cgcttagtgt gaatgggttt aacgaaaaat ttacattcgc
    42241 ttcgctcaga gtaaattttc ctacccattc aaacacgctc aggtagctca gaagggatgt
    42301 aagaaatgta aaaagacaga ataggagaaa ataatgttaa atattgtttt tcttgaccgt
    42361 accggtattc ctgctactca cgagattcct cgcccgaatt ttccgcatac ttggacagaa
    42421 tatgctacca cctctgccga ccaaactttt gagcgggtaa aagaggcgga tattatcatc
    42481 accagcaaag tgctgctcca acgtgattta ctggctaaat tacccaagct gaaattaatt
    42541 gcgatcacag caaccggcac gaacaatgtg gacttagcag cagcaaaaga gttagggatt
    42601 gcagttaaaa atgtgaccgg ctattccacc gtcaccgtgc cggaacacgt cattggtatg
    42661 atttattccc tgaaacaccg cttagccgat taccatcgtg atttaattac atcagatcgc
    42721 tgggcaacct gtgggcaatt ttgctatgta gattacccga ttcacgatgt tcgtggctca
    42781 accttaggca ttttcggtaa agggaacatc ggggctgaag tggcacggct ggcacaagcg
    42841 gtcggaatgc aggttatttt tgcagaacat caaggcgcaa ctgaaattcg agaaggctac
    42901 accgcctttg aagaggtatt caaacaagca gatattattt cactacactg ccctttaacc
    42961 gagcagactc aaaacctgat taatgcagaa accttagcct taatgaagcc gaccgcttat
    43021 attatcaata cgggtcgagg cccactgatt gatgaacagg cattgcttga ggcattagag
    43081 caaggcaaga ttgccggcgc tgcgttagat gttttagtga aagagccgcc tgaaaaagac
    43141 aaccctttaa tgttagcagc aaaacgttta ccaaatttac tgattacacc acacgttgcg
    43201 tgggcaagcg actctgcggt cacaacgcta gtgaacaaag taacacaaaa tatggaagag
    43261 tttgtagaaa caggtaaata atttgtagat accataagat attgtttaga tttcaattta
    43321 ccgtttcgaa caaccctctc cccttatggg agagggacga tttttcttca ttcagaagaa
    43381 aaatcaggga gagggaacaa gcgggtattt ttcatcagaa ttttgcaaat accccctctc
    43441 tctgaaaaat atttctgaac gaaatatttt tcggtctctc tcccacaagg ggagatagtg
    43501 gtaaactcca tagggacgga ccgatatatc cacccgtagt atctattatt tttaaaagaa
    43561 acagatgaat ttaacccctt tttttattgc ttttcgctat tttagatcga aaagtgctga
    43621 ccgtttcggg cggttagtca ccaatcttgc cagccttggc attgtgctgg gcgtaatggc
    43681 attggtgatt gtgctgtcgg ttatgaacgg tttggaaaat atgcagaaaa ccaatctgct
    43741 atccaccttg ccgcacgcta tcatcacccc tcaagagggg cattttgcca aaggtgaaaa
    43801 actggctcta cctgaatttg ccaagcaaag tgtggtgatt aaccgtgcga atgtgattat
    43861 ccaaagttca caaggcatta acgccggtca gttaatcggc gtggaaaatg ccacagacga
    43921 tccgttgtta gtggcggaaa atatccccgc attattgcct agcggtgaat ttaaggtagt
    43981 aattggctct cgtttagcca ataaattgaa cgttacggta ggcgataagc tccgcttaat
    44041 gatcactgaa aacagccaat atacgccact tgggcgagtg ccggtacagc gtttgtttga
    44101 aatttcgggc gtttatcaat ctaatcgtga agcgagcgaa tttaccctct ttgctaattt
    44161 agctgatgtc gggcgtttgc ttcgcatcag cgaagatcaa gtacaaggcg tacgtttata
    44221 tttgcaagat cctttccaag ttaccgaact tagccaatat ttcgatgcag aacgctacca
    44281 aatcagtgat tggcgtgagc aaaaaggcga atttttccaa gcggtgaaaa tggaaaaaaa
    44341 tatgatgggc ttactcatca gcctgattat tgtggttgca atttccaaca ttgtgacttc
    44401 actcagtttg atggtggtag acaaacaggg cgaaattgca attttacaaa cccaaggctt
    44461 aaccaaaaaa caagtgatgc agatttttgt gttccaaggg gcgattgtcg gagtaattgg
    44521 ctcgattatt ggtggtttgc tcggcgtatt gatcgcctac aatttagatc agattatcca
    44581 gcaattaaac ccgagcatac atctgcctac cttaatttca ggctcgcaaa ttgcggttat
    44641 tgttggggtg tcgatgcttc tttcactcct ttgcacactt tacccggcat accgagcctc
    44701 aaaaattgag ccggcacagg cattaagata tgaataataa ataataagaa cggaaataaa
    44761 atgacagaat tacttcgctg tgaacatatc agcaaatttt acgatgaggg cgaacagaaa
    44821 gttcaggtgc taaaagaggt gtcattttcg atgaacgaag gtgagctggt ggcgattgtc
    44881 ggtagttcag gttccggcaa aagcacccta ttgcacacat taggcgggct agatcagcca
    44941 agcaccggtg aagtctggat tcgagggcaa tctctgcaac agctcagttc agacaaatta
    45001 gcgttattgc gtaaccaaaa cttaggcttt gtgtaccaat ttcatcactt aatggcagac
    45061 tttaccgccc ttgaaaatgt gatgatgccg atgctgatcg gcaaacagaa caaaactgaa
    45121 gctgtcaatc gtgccgagaa aatgctacaa gcggtcggat tagctcatcg aatgacacat
    45181 cgcccatcag cactttcagg cggcgaacgc caacgggtgg cgattgcccg agcgttggtt
    45241 aataatccgg ctctggtact tgccgatgaa ccgaccggta atttagacca aaaaaccact
    45301 gaaagcattt ttgagctgat tcaacagctc aaccaagagc agaacattgc gtttttatta
    45361 gtaacgcatg atttaaatct agcgaataaa ctttcacgta gtcttgtaat gcgagatggc
    45421 gtgttaagcg aggggagctt atgagtacgc cgtttttcat tagctggcgt taccaacggg
    45481 gcaaacagaa aaacagactg gtttcactaa ttgccctctt ctccaacatc gggattgccc
    45541 ttggggttgc ggtattaatt atcgggctaa gtgcaatgaa cggctttgag cgagagctga
    45601 ataatcgtgt actttcggtt gtgccgcacg cagaattagt ttcgtttcaa ggcaatcagc
    45661 ctcagccgat ttttgatagc aaaaaattag aggcattggt aaaaaaatcg caaaatgtga
    45721 ccgctagttc ccctttcgtg agctttaccg ccttaattga aaatggggct cagcttaaaa
    45781 tcgcccaggt gcgaggggtt gatcctaaaa agcaagatca ggccagccaa ttaagccaat
    45841 ttattccacc cgagcaatgg caagcgttca atcagcaatt tcaagccgat gaagatggct
    45901 tgattttagg agccggtatt gccaaagcgt tagaagttga ggcaggagac gaagttacgc
    45961 ttttaattcc tcagccaaca gaagacggca aattagccca gcccttgcgt tttaacctaa
    46021 acgtaaccgg cattttgcgg ctagatgggc agctggatca cagttatgcc ttaattccac
    46081 tgaataaagc tcaagagctg atggaatacc aagcgaatga agtgtcagga cttgaaatca
    46141 gccttgccaa tccgtttgat gtacaacagc ttgaaatgcc acaactgaac ggctataccc
    46201 aaccgcttta tttgaatacg tggatcgata aattcggtta tatgtataac gatattcagc
    46261 tgattcgcac cgtgatgtac attgcaatgg ttctggtaat tggcgttgcc tgttttaata
    46321 ttatttccac cttgattatg gcggtgaaag acaaacaggg cgatattgcg attttacgaa
    46381 cacttggtgc aaataacggt tttatccgcc gcattttctt atggtatggc ttaatttcag
    46441 gtatgaaagg ggcgttattc gggctgattt taggtgtgat tttatcgcta aatttaaccg
    46501 ctattatcaa agcgattgaa gcattctttg aggtgaaatt gctttcagac ggagtttatt
    46561 ttgttgattt cttaccaagt gaattacatt ggcaagatgt cgtctatgta ttggcggcca
    46621 cgattatcct aagccttttt gccagcttat accctgccaa ccgagccgct aaattagaac
    46681 cggcaaaagt gttaagtggg cattaatcat tttcctattc taataaaaaa gcagctaccc
    46741 ctcgattatg tcagaaaggt agctgctttt atttatgtta ttactcttcg cctaataatt
    46801 tcaactcacg agccttaatt tggtttttta gaatttcaac taagtctgaa acgaggtaag
    46861 tacctaagtc tgcaccttta cgggtacgca cagacacttt accttcggcg atttctttat
    46921 caccgcaaac caacatataa ggcacacggc gtaaggtgtg ctcacgcact ttgaagccga
    46981 ctttttcgtt gcgtaagtct gctttcacac gaatgcctgc atcagaaagc tgtttcacca
    47041 cttgttgcac ataatctgct tggctgtcgg taatgttcat taccactgct tgggttgggg
    47101 caagccaagt tgggaagaaa ccggcatatt cttcggtgat aatcccgatg aaacgttcga
    47161 tcgagcctaa aatcgcacgg tgaatcatta ccggtgtgcg gcgaccatta tcttctgcta
    47221 cataagaggc ttctaaacga cccggtagag cgaagtcaag ttgcaccgtg ccacattgcc
    47281 attcacgtcc taagcaatca cgcaatgcaa actcaatttt cggcccgtag aatgcacctt
    47341 cgccttcttg aatttcatat tcaagtccgt tgttgcgtaa ggcgttggct aagccttctt
    47401 ctgctctgtc ccacattgca tcatcaccga tacggttttc cggacgggtt gaaagtttta
    47461 ctgcaatgtt agtaaaaccg aaggtgctgt aaatgtcgta caccattttg atacagctgg
    47521 ttacttctga ctcgatttgt tcttcagtac agaaaatatg tgcatcatct tgggtaaaac
    47581 cacgcacacg cattaagccg tgtaatgaac cggacggctc gttacggtga cacgaaccaa
    47641 attccgccat acggatcggt aaatcacggt aagatttcaa gccttgatta aagatttgaa
    47701 cgtgacccgg gcagttcatc ggcttaattg catattcacg gttttccgat tgggtagtga
    47761 acattaaatc tgcgtagttt tgccagtgtc cggttttttc ccaaagcaca cgatccatca
    47821 taaacggacc ttttacttct tggtaatcgt actctttcaa tttggtacgc acaaaagttt
    47881 caagttcacg gaaaatcgtc cagccgtcat tgtgccagaa caccataccc ggtgcttctt
    47941 cttgcatatg gtataaatct aacgctttac cgatacggcg gtggtcacgt tttgccgctt
    48001 cttccaaacg ttgtaaatat tcggctaatt gttttttatc agcccaagct gtaccgtaaa
    48061 tacgttgtag cattttattt ttgctgtcgc cacgccagta agcacccgct actttttgta
    48121 atttgaagtg gtggcagaaa cgcatatttg gtacgtgtgg accacggcac atatcaatat
    48181 attcttcgtg gtgatataac gcaggcgttg ccgtacgttc aatattttca tctaaaatcg
    48241 ccattttgta tggctcacca cgtttctcaa aggtatctcg agcttcttgc cagcttaccg
    48301 ggcgttttac cacgtcatag ttggtttttg ccagctctaa catacgcttt tcaagagcgt
    48361 ctaaatcttc ttgagtcaaa gagcggtcta aatcgatatc gtagtagaaa ccgttttcga
    48421 tagtcgggcc gatagccatt ttaacgtctg ggaataattg cttgatggcg tgacctaaca
    48481 agtgagcggt tgagtggcga atgatctcta aaccatcttc gtctttggca gtaatgattt
    48541 caagtgcgct gtcttggctg atgatatcag acgcatcacg gcgttcaccg tttacacgac
    48601 cggcaatggt ggctttcgct aaacctgccc cgatagattg ggcaacttcc attacagaaa
    48661 ctgggttgtc aaatgaacgt tgtgaaccgt ccggtaaagt aataattggc ataataaatc
    48721 cttacagtgg taatccatac gagagattac ttgtgttgtt tgaatgaaaa aaccgcctac
    48781 aagcggtctt ttttgattaa aattttgcaa tttgcttatt atttccctta caagtgggga
    48841 ataaaagcac tgaaattcta gcataaaaca aagaaaaatt aaactttgct gttttcagcg
    48901 gcctcttcat caagctcaat attttcattt tctgtttgtg gatcttgttc aagtatttca
    48961 agctgagcct ggtactcttg taccgcttct tcatcaaatg gaataagtgc gtcctcaaca
    49021 atttcaattt cttcaagtgg gcttgcggtt gcaattgggg tagcatattg catctctgct
    49081 cgttccgctt tcggaattga tttggtgcgg aaagcacaaa taaataaact aagtgagaac
    49141 agtccaaaaa gtgcataaaa gccatattca gcggaaaggc tcatcgcaaa accgataagc
    49201 ggtggagcaa ctaacgcccc cacaccatag caaaacagta aacccctgct tacttcaacc
    49261 gtgttcatat tattcggcaa ttcatcgttg gcacgggcaa tgctcaaagc atataagcta
    49321 aacagactac agccaaagaa aaaggcgata atatactgtc cccaagcggt caaattttct
    49381 tggaaaattg caaataatcc ggcaagtgcg gttaaagtgg caatcactga acaagctaaa
    49441 atggcgttac gtctgccaat acgattcgat aatatcgcca tcggcatttg gctgataaaa
    49501 ccaccgatca tcgagatcat caaataaagc gagatttcac ttaatgaaaa gctaaacttc
    49561 agcagaaaga ctgacgccat tgtaaaaaag ccgtttacca acattccgct aataaagctg
    49621 gttgctaagg ctaacggtga aatcgcaaat agtttaggaa tactaatgcg ctctcgagcc
    49681 ggaatatcag gctgaaccat tttagttaaa gcaattggga tcatcgacat cacaaccaaa
    49741 atggtagata agataaaaat gtttcggcta ctaagttcta aacttaataa acttacgcct
    49801 aaaataaagg cgagatagaa gataatgtta taagtggcaa gcactttgcc tctggtatcg
    49861 acattggttt tttcgcttaa ccaactttcg actaaaagca gcaagctata atgacagaat
    49921 cccaaaataa ttcgtaatac gccccagatc cacaaagtat caatcataat atgaccgaga
    49981 gcggcgatag caaaaacagc acagaaaacg ctaaatgaac ggatatgccc aacacttgat
    50041 acaatgcggt gagcaaaaat agtgcttaat gccgccccaa taaagaaagc agcgttaagt
    50101 aaaccgatga tgatgtccgt tatccccatt tctgccagtt tgatccctgc tgaatttaga
    50161 aataaaccgt agccgaaaaa cagaaaaaag atacctgaat aaagggagta aaatttagtg
    50221 ctattcatca atgctccttc aaacattctg ccagtattaa atcattgtac cgatttaata
    50281 ccttttaggc aaaaaagtta ttattagcgt tgagaaaata acttttggct attttgatta
    50341 aaaaatcaaa tgaaggggat tttgaaatgt agtaaaaaat agagcaatca gaattgaaaa
    50401 aggctttgcc gtaacaaagc ctttagaaag attagagttt cgagaagaat ttgtagcttg
    50461 ggctaaccaa aacacttgct aggagtgctt taagcacacc acctaaaata aatggatata
    50521 agcccgcttg taatactgtg ccttctggta caaagaaaga aagttgagcc aagccgaaag
    50581 caaaggtgat cacacttgca attaaggcga caaataaact tttccaaaaa gagtttaata
    50641 cgcctttatc gctataatag cctaagaaat aggcggttgg aatatagcct aataagtatc
    50701 cgcctgttgg accaaagaaa tgatggaaac ctgaagcacc gccggcaaag acaggtaaac
    50761 caatcgcccc ttcaaaaaga taaagtaata ctgcagcagt tgcggcttta cgacccattg
    50821 caaaaccaac cacagttaaa gcaagtgttt gccctgtaat gggtacaggg tacatcggca
    50881 cagaaatttg tgcaaaaata gcaagcagtg ttgctccaat aaaagttttc aaccaaaatg
    50941 tagttatact attggcttct agccaacgtt tagtttgaat taattgcgta gtgaacataa
    51001 tcctttcctt taatatggtt aaaatgttct caaccgatta tataggaaga tgtcttttag
    51061 ggtaagagtg aatttaaaat ggtaaaacca gtttatattt attgtgatga aggtagcagt
    51121 gaaattggtg ttcaatcact gttattggca gtaaaacagc atttacagcg tccggcttat
    51181 ctcatcaatg ccaaacaaat tattcaaagc aagttttccg atggctgttt attaatcatg
    51241 cccggtggag ccgatttacc ttactgcaaa aaattaaacg gagaaggcaa tcgtagaatc
    51301 cgccaattta ttgaacaagg tggagcttat ctcggtatct gtgccggagc ttattatggc
    51361 tgtgctgaat tgaattttgt agggcgtgac tatagcgtaa atggtaatcg agaactagct
    51421 ttatttaatg gcattgcgaa aggcagtctg ccgcagttta ccaacgggca actttacgat
    51481 aaaaacattg gtagcaaagc gatagttgaa gtaacacttg cagagggtgg aaaaatgccg
    51541 ttttattatc acggtggttg ctgttttgaa ccaaattcaa caacagtgat ttacaacccg
    51601 ttggcttatt atcctgatgg ctcagtagca atgatagagg gagagctagg gcgaggttat
    51661 tatctgttgt cgggtgtaca ttttgaatta caagcggtcg tttattggca aaaaattgta
    51721 aattgctgtg aaaatcttga cataaaaaca caagaagaag caatttgctc taattttaat
    51781 gtaaattatg gctcgcaaat ttggcaacat ctaaagcaac gactaaatca agcgtaaaaa
    51841 aataaccttt cgctattctg ccaaatggtt tctgcaatca gatttggtga ttctgttctt
    51901 aattcacata gactattgaa agtcactaaa agccgttccg gtcggttcgg ctggccttga
    51961 aagccaaaca ccggcatatc gggcgagtcg gtttccagta gtaaactttc aagaggtagt
    52021 ttgcggatag cctcacgggt tttgttagca cgttcatagg taatagttcc ccccacacca
    52081 attttataac cgagatcgac aaaacgtttt gcctgttcat agctgccggc aaagccgtga
    52141 accacaccgg ttttggttag ttgggctttt ttgaggaaca caaaaagttg atcgtggctt
    52201 ttacgtgaat gaagattaac gggtaaatta aattttttcg cgagggaaag ttgtgcctct
    52261 aaaaattcac attgcttttt ccataattca ggggtagaaa cttcacttac cgctttttcc
    52321 aaaccgattt cggcaatagc ggtacactgt ggatcttgtt ggcttagcaa attttccaat
    52381 aagattaaat cttgttgttg gtgctgttga atatacagtg gatgcaaccc taatccatac
    52441 accaaatttt ccggtttttg tttggcacaa gcggtcactt ttgcaaaatt ttttgcaaat
    52501 acggcaacga taagaatgca ttcaacctga tgctgttcgg cattctcaac caattccgga
    52561 atgcttaaat tcaggctttc tgcgagatag tcgaggtgag tatgagtgtc aaaaaatcgc
    52621 ataataaaac caataaaaac ggggactaga ttgtccccat ttttagcatt ttacgcaagc
    52681 aattagtttg ttacataagc atcttcatca cgagcctcag atggcttgag gaaagcaaag
    52741 aagcaaataa cacaaactac cgtaatcgca aaaccgatat aaactgataa ttcataatct
    52801 aaaccgaagc cgattttgtt gttcgcaagg taagttgcac acacggtagt gataaaccat
    52861 gcaggaatcg agcataccca gtggaatttt ttatagcggt ataagtaacc tgcggcagtc
    52921 cataacataa ccattgcagt catttggttt gcccaagtga agtaacgcca taatacgctg
    52981 aaatcaactt ttgagacaat gaaaccaagt acgaataatg gtacggcaat atacaaacgt
    53041 tttactaagg tacgttgttc taaaccaaag atttccgcta gttgtaaacg agcggctcgg
    53101 aatgcagtgt cacctgaggt gattggtaat actacaacgc ctaatacggc aaaaatacca
    53161 ccgataaacc ctaagaagtg taacgagctg tcatatacca ctttagacgg tgaaccggca
    53221 gagatcgcat cttgtaaggc ttgtgggttt tcatagaatg aaagacctac tgcacaccat
    53281 actaatgcaa ttaccccttc agtaatcatt gcaccgtaga aaataaaacg accttctttc
    53341 tcattttgcg cacagcgagc cattaatggg gtttgggttg cgtggaaacc ggataatgct
    53401 ccgcaagaaa tagttaagaa tagtaatggc caaattggaa catcaccttt cacttggaag
    53461 ttttgggtga atttttccca cgttaagcct tgaccgtctg cattcactgt acggaagaag
    53521 tcgataggat cagtcgcact taagtgagcg ctgactagac catataccat acctacagac
    53581 ataaagagta ataatgctcc gaagaaagga taaattcgac cgataatttt atcaacaggt
    53641 agtaatgtag caagaattat agtaagcaaa aataattaac gtccacacag aaatcacggt
    53701 tgctttatcc ataccccaaa cggttacgcc acctgatgct acagattctt taattgcttc
    53761 aacatcacct aattccattg cactttgggt tgcacctgca atatccatgg tgatggtaga
    53821 gagtaactga gcagggcttg caacgaaaac tacgcctact aataaaagca agatgagcgc
    53881 cattacgttg atgaataact tgactggacg acccaagaat ttccctgcca gatttggcat
    53941 cgttgcgcca ccgttgcgga tacttaacat accacagaag tagtcgtgta ctgcaccggc
    54001 aaaaatacaa ccaatcacaa tccaaagcat tgcaactggt ccgtataaag caccaagaat
    54061 cgggccgaaa atagggccgg tgccggcaat atttaataat tgaatcagcc aaatcttggt
    54121 tttagacatt ggcatataat ccacaccgtc attcatagag taagccggtg tcgatctttt
    54181 tgggttaatc acgaagattt tttcaatgat tttcccataa gtgaaatagc caagcacaag
    54241 cacggctaca cagaaaaaga accacaacat agtagaaatc ctataaattg agataaatga
    54301 tcatttttag cagaactgct aaaggcgtgc cattgtaagt gaggagtgag gataaagtaa
    54361 aacgaattgt tagatttgtg tgaataattt actgaaaatg tgaggttcat caaaaaatcc
    54421 ctttgttctg tatcaatcaa agggactttt taaagttaaa tatcgaattt ttgaattttt
    54481 gcttcaatgc cttgggcatc taatccaaga tcggcataag cttcagcttg agtagattgg
    54541 ggaacgaaaa agtcaggaat accaagcatt acaagcggtt tgattttgcc gatattttgc
    54601 aaatattcat tcacaaaact acctgcacca ccttgaatag cattttcttc aagcgtaacc
    54661 aacaactcgt gagaatccgc cactttttga agtaatgctt catctaatgg tttaatgaaa
    54721 cgcatatcta ccaaggtgta gttatgtttt tcagccacaa ttttggcttc atcaagcaaa
    54781 gcaccaaaat tcaaaatcgc aactttttta ccttcacgaa taatgtttgc tttacctact
    54841 tcaagtcctt gcattggctc aagttttact cctttagcat tgcctcgagg gtaacgaatg
    54901 gcacttggcg tattcatcgt gtaagcggta taaagcattt gtcgcatttc attttcatcg
    54961 ctcggtgcca taatggtcat attgggaata caacgcataa aacttaaatc aaatgcacct
    55021 tggtgggttt gtccgtctgc accgacaatt ccggctcggt caatcgcaaa aatcaccggc
    55081 aggttttgaa tagcaacatc gtgaattaat tggtcataag ctcgctgcaa gaagctggaa
    55141 taaattgcga ctaccggttt gtaacctgcg attgctaagc ctgccccgaa agtcactgcg
    55201 tgttgttcgg caatcgccac atcaaaatat tgttcaggga aacgtttgga aaattctacc
    55261 attcccgagc cttcacgcat tgccggcgta atgccgataa ttttcggatc acgctctgcc
    55321 atttcacata gccaatcgcc aaaaatattg gaataagtag gtgctgcttt tgattttggt
    55381 aactcggctg cggtagggtc aaatttcgga acgccatggt agccaatcgg atcattttcc
    55441 gcaggtgtgt agcctttgcc ttttttcgtg cgaatatgca gaaattgagg gcctttcagc
    55501 tcacgcatat tgctcaaggt tttgactaac tcgtcaatat tatgtccatc aatcgggccg
    55561 atataattaa agcctaactc ttcaaacaaa gtgctttcag gggagaaaat cacccctttc
    55621 atatgctctt cgcttttttt cataaagttt ttgatggtag gcactttatc taaaattttc
    55681 ttactgccgt cacgcactga agtatagagc gaaccagaaa aaatgcgggc aaggtggttg
    55741 tttaatgccc cgacattttc agagattgac atttcattat catttaagat aaccaacata
    55801 tcggtatgca atgcacctgc gtggtttaat gcttcaaatg ccattccggc agtgattgca
    55861 ccatcaccga ttacacagac ggttttacgg ccggcatttt ctttttctgc tgccaccgca
    55921 atgccaagtc cggcactgat cgaagtagaa gaatgcccaa cgcttaacac atcgtaaggg
    55981 ctttcttcac gccaagggaa ggggtgaata ccatcttttt ggcggatagt gtgcatttga
    56041 tctcggcgcc cagtaaggat tttatgtggg taagcttgat gaccaacgtc ccaaattaat
    56101 tggtcgaaag gcgtttgata aacataatgc aaagctaccg taagctctac tacccctaag
    56161 ccagaggcta aatgtccgct agtttgactg actgattcca ataaataggc tcgcagttca
    56221 tcaactacgg tttgaagctg gtctttagaa agtaaacgta aatcttccgg tgagttgatt
    56281 tcgcttaaca gaggatactt cttttccata atgttttatt acccacaacc atcaaataat
    56341 agatgatatt aaattaagct ttgagttctt cggtcaaagt aggctgaatg ctatttaaaa
    56401 tttctttaac cacacggccg ttaccaacaa ccagattacc tgttttcaag taatctgttc
    56461 cgccaacaaa gttagtcaca attgcaccgg cttcacgggc aataagttca ccggcggcga
    56521 aatcccacgg ttttaagccg atttcaaaga aaccatcaac acgacccgct gcaacatagg
    56581 caagatctaa agcggcagaa ccggtacggc ggaaatcagc tactccgtta ttcattaagc
    56641 cttcaagcat atttaaatgt gcatcacgat gtctgatgac tttgaaagga aaaccggttg
    56701 caattacagt gccttttaaa tcacggcgtt ctgcatcaat gcgtaaacgg aactcgttta
    56761 atttagcccc ttcgccacgc accgcagtga aaagctcgtt acggatagga tcgtaaacta
    56821 cccctactgt tgtacgtccg ttttcacgca cggcaatcga cacagcaaaa tgaggtaagc
    56881 gttttacgaa attggttgta ccatctaatg gatcgatcac ccattgtaca ttttcattgc
    56941 taccgtttaa cacgccggac tcttcggtca cgatcgagtg ttcagggtaa gatttacgga
    57001 tcacatcaat aattgccgct tccgctgctt tatcgatttc agtcacataa tcattcgtat
    57061 ttttttgtaa aacttgtgta tcttgaggcg attgttcata gcctttggca ataatattgc
    57121 ctgcttttcg tgccgcacga atagcaatgt ttaacattgg gttcatattt ccaccagatt
    57181 ttaaagaaca taataaagca cgaattataa agaatgtagc gaaataaaga aacaacaagc
    57241 ggtctaatct gtgaaaaatt ttgcaaaaaa atggcttttt ctaaccgctt ggagtttgga
    57301 ttcgttataa tacctctcat tcaagccacc catttaggta ctaaaaatgc aatttaaaga
    57361 aaataaccaa cctcgtttta aacacagaga agaacgccgt tcagatgagc gttccccccg
    57421 tttttcagat aaaggcaaaa tgcgaggaaa tgaaggtaaa agtgacagac cgcataagct
    57481 acattttaag cgtgacgagg cttattcacg ctctgagcag atttatccag cagaaggcaa
    57541 aaaagccagt ggtgaaggta gtgtgcaaat ttgggtaaaa ggtgggaata gctcagttaa
    57601 agagaaaaaa aacggcccgc tttcaccgag agcgcctgag aaaattaaga aaaatcgctt
    57661 ggaagagatg aaagtctatg gcgaaaatgc ctgtatcagt ttgttccaac aacgtcctgg
    57721 atctattgta cgtttatggg caacagtgga gggggcaaaa aaattaggcg atttaatgag
    57781 ctatttggct cagcacaaaa aagcctatca cgttattgac cgtgaagaga tggagcgagt
    57841 caccggtact gaacatcacg gcgatatgtg cttattggtg aaaaaaacgg cttcatttgt
    57901 gctagagggc tatttacaag tgccgaaaaa acaagattgc ttggtactgt tagatggtgt
    57961 aaacaatgct cagaatgtgg ggggaatcat cagaacgtgt gctttttatg gtgtgaaagg
    58021 cattattact gaaaatgtgg atagcttaaa ctccagttct gcagctcgtg tcgcagaggg
    58081 tggtttggaa tttgtgcgag cgttagaaac taaaaacaag catattgctt tggtacaact
    58141 ccgccaagcc ggttatcaaa ttgtccacct cacacgccat aagcaagccc cttctttaac
    58201 caaaattaag ctggcggaaa aggtggtttt tgtattaagt gagattcctg caagtgatgt
    58261 ggcttacgca gaagacacaa caatacagct ttcctttaat aatccgttaa atagtggttt
    58321 aaatgtggcg gtaaacgcag gtattctact taatcaatgg tatcaaaccc acattcttta
    58381 aggaattgaa atgaatcagc aaaaaccgtt tgaagtgatt gcgattgttg gcacacctcg
    58441 ccacgacagt gcatttgaaa cacatcttgc cgtttataat tggttaaaag atcgtgatta
    58501 tcaaatttta gtggaaacag aggttgccac tcagttacag cttaaggaaa gctacagttt
    58561 agatcagatt ggtcagcgcg cagagttggt gattgtgata ggtggcgatg gtaatatgct
    58621 tggcatcgcc cgagctttgg ctaaataccg agtgccactg ataggcatta accgtggcaa
    58681 tctgggtttt ttaaccgata tcgcacctca aacggctttt gaacagcttt atagttgctt
    58741 agtcaaaaat gagtatgtga ttgaagagcg attcctgtta gaggctttca ttgagcgcaa
    58801 cggtaaaatt attgccgcaa ataatgcctt gaatgaaatt gtggttcacc caacccaagt
    58861 ggctcgaatt attgaatttg aagtttatat tgacggaaaa ttcgcttttt cacaacgtgc
    58921 agatggcttg attgtggcaa cgcctacagg ctcaaccgcc tattcacttt ctgctggtgg
    58981 cccgatttta accccgaata tgaatgcaat ggcattagtg ccgatgcacc ctcacactct
    59041 ttcgtctcgt cctttggtgg ttgatggcga tagtcaaatt tcgcttcgtt ttgccaaata
    59101 taatacccct gatttagaag tgatttgtga cgggcaggtg aatatgcact ttacgcctga
    59161 agatagagtc ttggtgcgta aaagcccgga taaattacag ctgctccatt taaaagatta
    59221 taactacttt actgtattag gttctaaatt aggctgggca agtaagttgt tttaaacaca
    59281 agcggtgttt tttctgatta aatttgcaaa tgcaatatga attgatttca tatacatttc
    59341 aaaaatatat catttttatt caataaaaat ttgtggttca ataagctatc tgaaaaataa
    59401 aggggacaat aaaatgacaa caaattttaa atgccaagtg catactattg aatttaatga
    59461 aaattaccaa ccggagcaaa gcacccgttt aaccaccaac tttgccaacc ttgcccgtgg
    59521 cgaaaaccgc aaacagaacc tgcaaaatgc gattgcgatg atcaataacc gttttaacga
    59581 tttagcgaac tgggataacc cgaatgcgga tcgttattcg gtgaaattgg atattgtctc
    59641 actggatatt gatgtggaag gcaaaggcga gtttttccct gcgattgagt ggctgaaaac
    59701 ctatgttatc gactacaaaa ccggcaaaac cattgatggc attatcggta ataacttctc
    59761 ttcttttgtg cgtgattacg atttcagcgt attgttgtta gatcacaata aagacaaacc
    59821 gcaatttagc gtgccggaag gctatggcga gttacacggc aagctgttta agcatttatt
    59881 ggcatcgcct gaatataccg caaaatataa aaaaccaccg gtgatctgtt taagcgtggc
    59941 aaccacccgt acctacacaa gaaccactaa cgttcaccca attttaggtg tggaatatct
    60001 gcaagatagt tattcattaa ctgatgccta ttttgcgaaa atgggcttaa aagtacgtta
    60061 ctttatgccg ccaaaatctg ttgcacccta tgcgttctac tttgatgaga gtgcagattt
    60121 actcaatgat tacactaact tagagctaat cagcacgatt gccacaatgg aagcgttcca
    60181 aaaaatttac cgtccggaaa tttacaatgc caattcggtc gcagggcagg tctataaagg
    60241 cagcctgact taccaagatt attccgtcac caaagtggaa tatgaccgtg aagaacgcac
    60301 ccagttggcg atcaaacagg gtaaatacac cgaagagcat tttattaaac gttaccaagc
    60361 gattttagag gcttgggcga cggaggaata aacgtagggt gggcgtaagc ccaccataaa
    60421 atgagatata accaatggtg ggcttacgcc caccctactt tttataggaa aattcaaaat
    60481 gagcaacatt cttctcccaa cctctaccgc cggcagccta ccaaaacctt cgtggcttgc
    60541 cgagccggaa aaactgtggt caccttggaa atttgaaggc gaggaactac ttcaagccaa
    60601 acgtgatgcc ctccttgttt cccttgccga acaaattgcg gcagggattg atattgttag
    60661 tgatggcgaa cagacccgcc agcactttgt gaccaccttt atcgagcatt tggaaggggt
    60721 agattttagc aagcgtgaaa ttgtgcgcat tcgtaaccgt tacgatgcca gcgtgccgag
    60781 cgtggtgggg gcagtttccc gtccgaaatc ggtgtttgtg gacgatgcca aattcttgcg
    60841 tgcgcatacc gaaaagccaa ttaaatgggc attacccggc ccgatgacga tgatcgacac
    60901 cctctatgac ggtcattaca aaagccgtga aaaactggcg tgggaatttg ccaaaatcct
    60961 caacgaagaa gccaaagagt tggaagcggc aggtgtcgat attattcaat ttgacgaacc
    61021 ggcgtttaac gtcttcttcg atgagctgaa cgactggggc gtggcagcgt tagagcgtgc
    61081 agcggaaggc ttaaaatgcg aaacggcggt gcatatctgc tacggctacg gtattaaagc
    61141 caataccgac tggaaacaga ccctcggcaa cgaatggcgt caatacgaag agagtttccc
    61201 gaaactgcaa caatcaaaaa tcgatattat ctcgttagag tgccaaaact cccgtgtgcc
    61261 aatggactta atcgaattag tgcgtggcaa aaaagtgatg ctgggggcga ttgatgtagc
    61321 aactaacatt atcgaaacac cggaacaagt ggcagatacg ttacgcaaag cattacaatt
    61381 tgttgatgcg gataaactct acccaagcac caactgcgga atggcgccac tttcacgcca
    61441 agtcgcacaa ggtaaattac aggcactcag ccaaggggca gcgatattgc gtgcggaatt
    61501 cgcaaaataa ttttgcgacc tgcatcgaaa atatcaactt tgctctttgc tcgtttccag
    61561 attttcttcc aaaataacag gaaatgacgg aggcactatg ctaaatctat ttaaaaagcc
    61621 aattaagaaa agctcctttg aggcttgggc aaaactaatg gacgatgtgg caaaagttgc
    61681 aattttagca attcctgtta ttctctatgg agaatattca ctgctaatga aatttacaca
    61741 ctcaattacc ttatttgcag tagtttattt tttgttagca acggcaagat tgtttcgaga
    61801 aacagcagag gagatgtaaa tggacggatt gacaatcgga ttatttcttt tgcttgcatt
    61861 ttcatttgct gcataccaat gggcaaagca tttaaaagat cataaccatt aattcaatga
    61921 ataatactaa gcggtcatat ttggtaaatt ttttacaaaa tgtgaccgct tgtttttctt
    61981 tcactcgaag ttaattttta tataaataat actatctatg aaactaaaaa atgcgtaaaa
    62041 taacgtgaaa tcaacttacg caaacgttta cttaagctta ttaggagtcc aaaaatgtta
    62101 aaacgtgata tgaatatcgc tgattacgat gcagtattat ggcaagccat tcaagatgaa
    62161 gatcgccgtc aagaagaaca tattgaatta attgcatctg aaaactatgc aagcccacgt
    62221 gtaatgcagg ctcaaggctc acaattaacc aataaatatg cagaaggtta tccgggtaaa
    62281 cgttactatg ggggttgtga gtatgtggat attgtagaac aacttgcgat tgaccgtgcg
    62341 aaagcattgt tcggggcaga ttatgccaac gttcaaccgc attcaggctc acaagcgaat
    62401 gcagccgtat atatggcgtt gcttaatccg ggtgacacta ttttaggtat gagtttagcg
    62461 cacggcgggc atttaaccca cggtgcttca gttagcttct ctggtaaaat ttataaagca
    62521 gaacaatacg gcattactga tgaaggctta attgattatg aagcattacg caaacaagcc
    62581 caagaagtga aaccgaaaat gattgttgct ggtttctctg cttattctca agttatggat
    62641 tgggcaaaaa tgcgtgagat tgccgatgaa gttggggcat atttatttgt ggatatggct
    62701 cacgttgcag gcttaattgc ggcgggagtt tatccaaatc cgcttcctca cgctcacgtc
    62761 gtgacgacaa caacccataa aaccttagcc ggccctcgag gtggtttgat tttatctgca
    62821 tctggcgatg aagaaatgta taagaaactg caatctgccg tattccctgc tggtcaaggt
    62881 ggaccattga tgcacgttat tgcggcaaaa gcggtttgtt ttaaagaagc tttagagccg
    62941 gaatttaagg catatcagca acaagttgta aaaaatgcaa aagcaatggt tgaggtattt
    63001 aagcaacgtg gttttgatgt ggtttcaaac ggtacggaaa accatttatt ccttgttagc
    63061 tttgtaaaac aaggtttaac cggcaaagcg gcagatgctg cattaggagc tgcgaacatt
    63121 accgtgaata aaaactcggt gccgaacgac cctcaaaaac cattcgtgac ttcaggtatt
    63181 cgtgtgggta cgccttctgt gacccgccgt ggttttaaag aagcagaggt gacagcatta
    63241 gccggctgga tgtgcgatgt gctagatagc attggtaagg ataatcacga acaggtgatt
    63301 gcagagacta aagcgaaagt tttagacatt tgtaaacgtt taccagtgta cgcataatct
    63361 caactttaca ctttttcaag cggtaa
//
LOCUS       DANLUT010000002        58755 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLUT010000002 DANLUT010000000
VERSION     DANLUT010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 58755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 58755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..58755
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..799
                     /locus_tag="PXB38_000067"
     CDS             <1..799
                     /locus_tag="PXB38_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5352440.1"
                     /translation="EQKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYWRKLKQRL
                     KAEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQWLAKVGY
                     ERLQEINDPSQSLDRARENWQKIGRSEKWIQQRMMGQETRNKLTDYWKSSGVEQPQDF
                     AFLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQIAESMQA
                     VGVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
     gene            complement(893..1372)
                     /gene="trmL"
                     /locus_tag="PXB38_000068"
     CDS             complement(893..1372)
                     /gene="trmL"
                     /locus_tag="PXB38_000068"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL5352441.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(1549..3708)
                     /gene="rlmKL"
                     /locus_tag="PXB38_000069"
     CDS             complement(1549..3708)
                     /gene="rlmKL"
                     /locus_tag="PXB38_000069"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL5352442.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            3906..4535
                     /locus_tag="PXB38_000070"
     CDS             3906..4535
                     /locus_tag="PXB38_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5352443.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            complement(4571..5581)
                     /locus_tag="PXB38_000071"
     CDS             complement(4571..5581)
                     /locus_tag="PXB38_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5352444.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(5595..6524)
                     /gene="rbsK"
                     /locus_tag="PXB38_000072"
     CDS             complement(5595..6524)
                     /gene="rbsK"
                     /locus_tag="PXB38_000072"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL5352445.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            complement(6645..7523)
                     /gene="rbsB"
                     /locus_tag="PXB38_000073"
     CDS             complement(6645..7523)
                     /gene="rbsB"
                     /locus_tag="PXB38_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL5352446.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINLTDSEAGGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            complement(7546..8514)
                     /gene="rbsC"
                     /locus_tag="PXB38_000074"
     CDS             complement(7546..8514)
                     /gene="rbsC"
                     /locus_tag="PXB38_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL5352447.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVIVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            complement(8524..10020)
                     /gene="rbsA"
                     /locus_tag="PXB38_000075"
     CDS             complement(8524..10020)
                     /gene="rbsA"
                     /locus_tag="PXB38_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL5352448.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLAIAENIFL
                     GREFKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAEAIGKSTGLN"
     gene            complement(10030..10449)
                     /gene="rbsD"
                     /locus_tag="PXB38_000076"
     CDS             complement(10030..10449)
                     /gene="rbsD"
                     /locus_tag="PXB38_000076"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL5352449.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQAQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            10679..10939
                     /locus_tag="PXB38_000077"
     CDS             10679..10939
                     /locus_tag="PXB38_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL5352450.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            complement(10971..11861)
                     /locus_tag="PXB38_000078"
     CDS             complement(10971..11861)
                     /locus_tag="PXB38_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HDL5352451.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDIPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(11870..12733)
                     /locus_tag="PXB38_000079"
     CDS             complement(11870..12733)
                     /locus_tag="PXB38_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL5352452.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            13028..13744
                     /gene="rph"
                     /locus_tag="PXB38_000080"
     CDS             13028..13744
                     /gene="rph"
                     /locus_tag="PXB38_000080"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL5352453.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVADGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            13968..16267
                     /locus_tag="PXB38_000081"
                     /pseudo
     CDS             13968..16267
                     /locus_tag="PXB38_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(16345..17046)
                     /locus_tag="PXB38_000082"
     CDS             complement(16345..17046)
                     /locus_tag="PXB38_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL5352454.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(17051..18460)
                     /locus_tag="PXB38_000083"
     CDS             complement(17051..18460)
                     /locus_tag="PXB38_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL5352455.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(18462..19193)
                     /locus_tag="PXB38_000084"
     CDS             complement(18462..19193)
                     /locus_tag="PXB38_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL5352456.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(19337..20941)
                     /locus_tag="PXB38_000085"
     CDS             complement(19337..20941)
                     /locus_tag="PXB38_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5352457.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(21232..22323)
                     /gene="ychF"
                     /locus_tag="PXB38_000086"
     CDS             complement(21232..22323)
                     /gene="ychF"
                     /locus_tag="PXB38_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL5352458.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(22509..23096)
                     /gene="pth"
                     /locus_tag="PXB38_000087"
     CDS             complement(22509..23096)
                     /gene="pth"
                     /locus_tag="PXB38_000087"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL5352459.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(23169..24044)
                     /locus_tag="PXB38_000088"
     CDS             complement(23169..24044)
                     /locus_tag="PXB38_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL5352460.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            24277..25857
                     /gene="prfC"
                     /locus_tag="PXB38_000089"
     CDS             24277..25857
                     /gene="prfC"
                     /locus_tag="PXB38_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL5352461.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHAEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            26115..27689
                     /locus_tag="PXB38_000090"
     CDS             26115..27689
                     /locus_tag="PXB38_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352462.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKSHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPSFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNELPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            27909..28841
                     /locus_tag="PXB38_000091"
     CDS             27909..28841
                     /locus_tag="PXB38_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352463.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGSWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            28851..29633
                     /locus_tag="PXB38_000092"
     CDS             28851..29633
                     /locus_tag="PXB38_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352464.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            29722..31134
                     /locus_tag="PXB38_000093"
     CDS             29722..31134
                     /locus_tag="PXB38_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5352465.1"
                     /translation="MKLLNIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPTSKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(31221..31964)
                     /gene="rlmB"
                     /locus_tag="PXB38_000094"
     CDS             complement(31221..31964)
                     /gene="rlmB"
                     /locus_tag="PXB38_000094"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL5352466.1"
                     /translation="MSEQIYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(32019..33386)
                     /gene="pssA"
                     /locus_tag="PXB38_000095"
     CDS             complement(32019..33386)
                     /gene="pssA"
                     /locus_tag="PXB38_000095"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL5352467.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(33456..35003)
                     /locus_tag="PXB38_000096"
     CDS             complement(33456..35003)
                     /locus_tag="PXB38_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL5352468.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVGVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDADQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(35128..37944)
                     /gene="ileS"
                     /locus_tag="PXB38_000097"
     CDS             complement(35128..37944)
                     /gene="ileS"
                     /locus_tag="PXB38_000097"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL5352469.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNLADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(38047..39009)
                     /gene="ribF"
                     /locus_tag="PXB38_000098"
     CDS             complement(38047..39009)
                     /gene="ribF"
                     /locus_tag="PXB38_000098"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL5352470.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQEVFVVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            39233..40507
                     /gene="nadR"
                     /locus_tag="PXB38_000099"
     CDS             39233..40507
                     /gene="nadR"
                     /locus_tag="PXB38_000099"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL5352471.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKEPYEKYLHLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            40525..41217
                     /locus_tag="PXB38_000100"
     CDS             40525..41217
                     /locus_tag="PXB38_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5352472.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDSIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            41350..42072
                     /gene="arcA"
                     /locus_tag="PXB38_000101"
     CDS             41350..42072
                     /gene="arcA"
                     /locus_tag="PXB38_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL5352473.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            42092..42610
                     /locus_tag="PXB38_000102"
     CDS             42092..42610
                     /locus_tag="PXB38_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL5352474.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(42688..43917)
                     /gene="serA"
                     /locus_tag="PXB38_000103"
     CDS             complement(42688..43917)
                     /gene="serA"
                     /locus_tag="PXB38_000103"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL5352475.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(43954..44613)
                     /gene="rpiA"
                     /locus_tag="PXB38_000104"
     CDS             complement(43954..44613)
                     /gene="rpiA"
                     /locus_tag="PXB38_000104"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL5352476.1"
                     /translation="MDQQEMKKIAAQAALKFVKSDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(44758..46092)
                     /gene="glmM"
                     /locus_tag="PXB38_000105"
     CDS             complement(44758..46092)
                     /gene="glmM"
                     /locus_tag="PXB38_000105"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL5352477.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(46118..47650)
                     /gene="ilvA"
                     /locus_tag="PXB38_000106"
     CDS             complement(46118..47650)
                     /gene="ilvA"
                     /locus_tag="PXB38_000106"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL5352478.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(47911..48504)
                     /gene="slyD"
                     /locus_tag="PXB38_000107"
     CDS             complement(47911..48504)
                     /gene="slyD"
                     /locus_tag="PXB38_000107"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5352479.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(48607..48747)
                     /locus_tag="PXB38_000108"
     CDS             complement(48607..48747)
                     /locus_tag="PXB38_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352480.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(48819..49505)
                     /gene="aqpZ"
                     /locus_tag="PXB38_000109"
     CDS             complement(48819..49505)
                     /gene="aqpZ"
                     /locus_tag="PXB38_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL5352481.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHVSGGHFKPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
     gene            complement(49700..50419)
                     /locus_tag="PXB38_000110"
     CDS             complement(49700..50419)
                     /locus_tag="PXB38_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL5352482.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGKSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(50477..51214)
                     /gene="tsaA"
                     /locus_tag="PXB38_000111"
     CDS             complement(50477..51214)
                     /gene="tsaA"
                     /locus_tag="PXB38_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL5352483.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            51394..52302
                     /locus_tag="PXB38_000112"
     CDS             51394..52302
                     /locus_tag="PXB38_000112"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL5352484.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVISGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(52378..53364)
                     /locus_tag="PXB38_000113"
     CDS             complement(52378..53364)
                     /locus_tag="PXB38_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL5352485.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(53458..55329)
                     /gene="rpoD"
                     /locus_tag="PXB38_000114"
     CDS             complement(53458..55329)
                     /gene="rpoD"
                     /locus_tag="PXB38_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL5352486.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDTDDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDEDGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVSKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAVPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(55588..57336)
                     /gene="dnaG"
                     /locus_tag="PXB38_000115"
     CDS             complement(55588..57336)
                     /gene="dnaG"
                     /locus_tag="PXB38_000115"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5352487.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKSPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSPEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMFPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLNDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYLVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(57490..57705)
                     /gene="rpsU"
                     /locus_tag="PXB38_000116"
     CDS             complement(57490..57705)
                     /gene="rpsU"
                     /locus_tag="PXB38_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL5352488.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(57853..58449)
                     /locus_tag="PXB38_000117"
     CDS             complement(57853..58449)
                     /locus_tag="PXB38_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL5352489.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
BASE COUNT        16811 a        13362 c        11407 g        17175 t
ORIGIN      
        1 tgaacagaaa tctgtacgca gtcattacga tgaagaaaaa gataaatggt atttttctat
       61 tattgatgtg attgctattt taaccgaaag cctagatccc tctgcttatt ggcgtaagct
      121 aaaacagagg ctaaaggcag aaggcaatga aaccgtgaca aattgtcacg ggttgaaaat
      181 gccctctgct gacggaaaaa tgcgtttgac tgatgtagca gataccgaac aacttttccg
      241 acttattcaa tctatcccta gtccgaaagc agagcccttc aaacaatggt tagcaaaagt
      301 aggttatgaa cgcttacagg aaataaacga tccaagtcaa agtctagatc gagcaaggga
      361 gaattggcag aagataggac gaagtgaaaa atggattcag caaagaatga tgggacaaga
      421 aacccgaaat aaactgaccg attattggaa atcgtcaggg gttgaacagc cacaagattt
      481 tgcattttta accaatgtga ttcatcaaga atggagcgga ctatctgtac aaaagcataa
      541 atcgcttaaa ggtttaaaaa gccaaaatct gcgagatcat atgagcgaag ctgaattgtt
      601 atttacagca cttgctgaac tttccagtcg gcaaattgca gaaagtatgc aggcagttgg
      661 ggttgatgaa aatgcccaag caggaaaaca aggtggcaat attgccaaaa atgcccgtca
      721 ggaattggag aataaaacag gtaaatcagt tgttaccgga gagaattttt tacctccagc
      781 taaaaatgaa gaagaataga cacaatagat gttcttaatt agtcaaggtc gagcctcccc
      841 caaccttgac cacaaacttg caaaaaatag ccaaaatcac accgcttgca agttaaatag
      901 attgtgccgc taccgcattt tggtagccga attgtcgcca cgcctcatac acaaccaccg
      961 ccaccgagtt agataaattc atactgcggc tgtctttgca catcggaatg cggatttttt
     1021 gcgacatcgg catttccgct aataatggct ttggaatgcc tctgctttcc ggcccgaaca
     1081 ttaaaaaatc gccaagttca tatttcacat cactgtggtt ctgctcccct ctggtggtta
     1141 aggcgaacaa gcgtttaggc ttagcacgct caaggaaatc ttcaaaattt ttatattttt
     1201 gaatatccac aaattcgtga taatccagcc ccgaacggcg gagcttttta tcgtcccaac
     1261 caaagccgaa cggttcaatc atatgcaaac gaaagccaca gttggcacaa aggcggataa
     1321 tatttccgct gttttgcgga atttcaggtt cgtataaaac aatatctaac attttttagc
     1381 cttactctct ccccttgtgg gagagagacc gaaaaatatt tcgttcagaa atatttttca
     1441 gagagagggg gaaataactc tttcatcagt aacttcttac cctctccctg atttttcttc
     1501 tgaacgaaga aaaatctatc cctctcccac aagggtcgag ggtattatct atacattctt
     1561 cacaatccaa caattatgga tttgcggatt gcgttcaaaa tccaacggta aggttttatg
     1621 cgaaatattt tccgccgtta agcctaatgc tgccaaaccg tcaaaatcca ttttaaagcc
     1681 acgcttattg ttcgagaaca caatggtacc atcagcggtt aaaatacgtt taagctgttt
     1741 cattaactca atatggtctc gttgcacgtc ccaactgttt tccattcgtt ttgagttgga
     1801 gaaagtcggc ggatcgacaa aaatcagctc aaatcgctca cggcattctg ccagccattg
     1861 caagcaatcg gcttggaaca aacgatgatg gcgaagtgat aaattattca gctctaaatt
     1921 ttgctccgcc cagttcaaat aggtgttcga catatccact gtagtggtcg attttgcccc
     1981 attaagagca gcgtgaaccg tagctgaacc cgtgtaggca aacagattca ggaatgtttt
     2041 gccttttgcc atttcgccca ccattttacg ggttaagcga tggtctagga acaaacccgt
     2101 atccaagtaa tcggttaaat tcacccacag tttcgcccca tactcgttca catagaaata
     2161 ctcgccttta ttggcaagtt tttcgtactg attcgtgcct ttttgttttt ggcgaacttt
     2221 caacactaat ttattagttt caacacctgt cacataaagc gtagcagaga ctgcatctaa
     2281 caagcgttgg cgggcttttt gctcatcaat atttttcggg gcttggtatt cctgcacaac
     2341 aatgtggtcg ccatatctgt ccaccgctaa attatattca ggcagatcgg catcgtataa
     2401 acggtaggca tcaatgcctt gttgtttcgc ccatttttcg atctttttga tatttttggt
     2461 taagcgattt gcaaaatccg gagcgacttg agcattctgt tcaaattgta aattttcatc
     2521 taaatctgac cgcttgttat gctcgctgat ggagtaattt ttctgcacac aatccaacgg
     2581 accgtttttc gctttgaatt gacgggctga acgtaaacgc aggcaattta acaattcagg
     2641 ctcgccgcta aaaattgagg cattccaacc ggcaaattgc tgttttaggc gttgcccgaa
     2701 caccgaataa agagcaatta acgccggcgt tgtgcctaaa cgttcaccat aaggggggtt
     2761 acacaccacc gtgccgattt tttccggaat cggatttttt aacgcagcca catcaccttg
     2821 ttgccattga atgagatgat ctacccctgc atttttcgca ttttgctttg ctttagtcag
     2881 cacacgatga tcgagatcaa aaccgaagaa cattttttgt agggacgaat tgcaattctc
     2941 ccctaccgca cccaattcaa catttcggaa tgcctcatct aacacggctt tccacatcgc
     3001 ttgttgatgc cctttccacg cattaaagcc ccaatgttta cggtgaagtt gaggggcaat
     3061 attcgctgcc atttgtgctg cttcaatcag taacgtgcct gaaccacaca tcggatcaac
     3121 caatggcgtg ccgactttcc agccggaacg caaaataatg gctgccgcca atgtttcacg
     3181 caacggagct ttaccggttt cttcccgata gccccgaata tgtaaggcat ctccacttaa
     3241 atcaagcgaa accacaacat tttcacgatc caaataaaca tgaatgcgaa catccggatt
     3301 atctttatct actgttgggc gggcaaaacc tttgcgttca aagtaatcca caatgccgtc
     3361 tttcactcgc attgccccaa attgggtgtt gcggatttct cggttagtgc cgctgaaatc
     3421 aatgtaaaag gtatcacggg gatcgaataa atccgcccag ttaaatgaca cgatggaagc
     3481 atataaatcg ctatcactaa aaattttggt gctgatgagc ggcagtaaga tccgagaggc
     3541 taaacggctg tgtaataatg cctgataagc ccctttttgc gtggtggtaa aatgcacacc
     3601 gccttgagcg actttgcatt ctgccgcaca aatctgctcc agttcggttt ttagtatttc
     3661 ctcaaaacca cgggctgccg tggcaaaata ggttgtttga tttgtcattc ttttcacact
     3721 tgaaataaaa attggcagta attatagccg aacaagcggt ctttttcttg caaagttttg
     3781 caatttcttt tttagttaaa aattagctaa gatcaaaaaa gcggcattta gtaaatccct
     3841 aaacttgcta ttttgaatta ataattgcaa aattaaccga ttaagagaaa ggaaaggaga
     3901 aataaatgac agctccaact caaattttac tcattgacga ccacccatta atgcgtcagg
     3961 gaatgcgtca actattggaa ttagatcacc aatttagtgt agtgggtgaa gcaagcaacg
     4021 gcaccgacgg tatcaaactt gcattacgac ttgagccgga tgtgattatt ctggatttaa
     4081 atatgaaagg gctttcaggg ctagatactt tacgctcatt gcgcgctcaa ggtatagatg
     4141 ccagaatcat tgttttaaca gtgtcagacg agcaatccga tgtatttgca ttaatggatg
     4201 ctggtgtgga cggctattta ttaaaagata ccgacacccc ggaactacta gataatatcc
     4261 gtaaagcggc tgccggtgaa gtggtattaa gcgaaaccgt tcgccaacat ttactcaacc
     4321 gccagccaga aaatgatcct ttaagttgct taacagatcg tgaactggat gttttacaat
     4381 ggctcgcaac cggtatgtcg aacaaacaaa ttgcggctca gctctttatt tccgaagaaa
     4441 ccgtaaaagt gcatatccgc aatttactgc gtaaattaaa cgtgcattcc cgagttgccg
     4501 ccaccgtgct ttatttggaa cagcaaaaag gctaattgaa atcggataaa aaacgctgaa
     4561 taacttcaca ttattcagcg tttttgttta ttgtttggat tgaatgcctt aaaactaatt
     4621 caggttcaag cattatggtt tgaaaatcag tggatttaaa acgaattcgt tttagcaaag
     4681 tttccaccgc aagccgcccg agttccgctt tgggctggct aatggtactc agcggtgggg
     4741 aaaggtattt tgccagttca atatcgtcat agccgataat cgaaatatct tgcggtattc
     4801 gtaaaccttg ttgccagatt gcttggtaag cccctagagc aatggtgtcg ctacaggcaa
     4861 ataccgctgt cggcttttcg ctttgggcaa gcaaagcatt cattccatta accccgccgg
     4921 caaaatcaaa atggctttcg aacacccagt ttggattgag tggaatattc gcctcggcaa
     4981 gtgctttttt gtagccttct aaacgatttt ttgccaatga tttttttagg tttccagtaa
     5041 taatcgcaat cttagaatgc cctgcttcaa ttaaggtttt tgttgcgaga tagccgccgg
     5101 atattgaatt ttcaaagatt ttatctgcat tgagctcggt aaaccaccag tctaacacca
     5161 ccaatggcag cggaatattc aagctctcat cggcattcaa tctggtatcg ccacacatca
     5221 gtaacaagcc atctactttt cgttgcatca gcatttgcaa atggtgttgc aaacgctcgg
     5281 tgtcaccgtt ggtagtggca ataatcaggt tatattgatg ttgctggcaa tattgctcca
     5341 cccccgccat cacctccgca aaaaacggat tgccggttgc cgttaccagc attccgatgg
     5401 ttttagtttc attcactttg aggctacgag ccaatgcaga aggcgtgtaa ttcagttctt
     5461 tcaccaccct ctgcactctt tcccgaattt cctcgctgac aaatcggcta ttgttgataa
     5521 cgtgagaaac ggtcgaggtg gaaacctgtg caagccgtgc aatatccttc attgttgcca
     5581 tttgcaaaat tttcctaaaa actcaccgct tgttggctta gaaaatccag tgtttcctga
     5641 cgggtcggaa tagaaggttg agcccctttg cgagtcacac taatcgctgc cgctgcgtga
     5701 gcaaaacgaa tggcttgatc cagcggttta tcttctaaca ttgcagtcac taatgctccg
     5761 ttaaaagtat cccctgcggc agtggtatcc accgcttgaa cacggaagcc tgcaacgatt
     5821 ttgcctacac cgttttcgct tacaaatacc ccttttgagc caagtgtaat caacactttt
     5881 tcgatgccct tttggtgaaa cacttgtgcg gcttgaatcg cactggcttc atcaacaact
     5941 ttcacgccgg ttaatatttc cgcttccgtt tcatttgggg taatcatatc cagtaagttt
     6001 aacagttcat cgggtaacgc tcgagcaggc gcagggttta atattacttt cgtgccgttt
     6061 tgctgagcca attttgctgc ttgcacaatc gccggcaacg gtgtttctag ctgcattagc
     6121 aaataatccg cctgtgtgat ttcggctgca cactttgcca caaccgtttc atccaaatga
     6181 ccgttcgctc cggctgaaat cacaatactg ttctcgcccg attccgccac ttgaatcatt
     6241 gcaatgccgg tcatttcatt cggaatcgtt ttaatcgagc gagtgtcaat gccatcttgc
     6301 tcaaaggctg atttcattgc tttgccgatg tcatcactgc caatacaacc gatgaaagaa
     6361 accttagctc ccaaacgtgc tgccgccacc gcctgatttg cccctttacc gccataagca
     6421 atgtggcagc tatgtccggt gagcgtttcc cccggtttgg caaaataggg aacggaaatc
     6481 acgtgatcag cgttaatgct accgagaacg gtgagttttt tcatattaag ccctcaaatt
     6541 acctagtaca acaaaactag gattctgata gcactagtct ctgacgagtg ctattttatt
     6601 aattcaaagc gttcgtcaga gacgaacgct atcttcaagt ataattattt tgaaataacc
     6661 tttaaatcaa ccggaatttt tgcttccact ttttcgcctt ttagcacttt atcggcagtt
     6721 tctacgccta atgagccaat cagttcaggt tgttgagcaa tcgttgcggc aagtttaccg
     6781 ctttcaacgg cttttacgcc atcatctgtg ccgtcaaagc ccacaattac aacctctttc
     6841 ttcgctgaac tcactgcacg caaagctcct agtgccattt catcattttg agcaaaaata
     6901 gcttgtacgt cccctttgct tgagagcaag ttttcagtca catttaagcc tttagtgcgg
     6961 tcaaaatcag ccggttgact ggctaataca ttgaatttat gtgcttcaat cgcttgttta
     7021 aagccttcac cacgttcacg agcggcggaa gtgccggcaa tgccttctaa ttgaatcact
     7081 ttcgcccctg agcctaattt ctgagcaatg aaatctcccg ccattttgcc gccggcaacg
     7141 ttatcggaag cgatatggct aaccacttcg ccttttgctg caccacggtc aagtgtaata
     7201 accggaattt tgttgcgatt tgcaatagcc accgcatttc cgcccgcttc cgaatcggtt
     7261 aggttaatca ataacacttt tgccccacgc accgttaagt cttccacatt ggaaagctct
     7321 ttagccgggt cattttggga atcaagcacc actaatttgt agcctaattc atctgctttt
     7381 ttctgtgcac cgtctttaag gctcacaaag aatgggttat ctaaagtcga tactgcaaga
     7441 gcgatagtct cttttgccga agcagtggct gcaaccgata aacttaacat aaccgctgat
     7501 gcaatcgtag ttaatttttt catagaaatc tcctttaaag atagattaaa cttttttagt
     7561 gcctagataa ttatcagcta atacagctgc taaaataacc aacgctttag caatcatctg
     7621 ataatatgaa gaaatatcca ataaattaag ggcattgttt aagaaaccga taattaatgc
     7681 cccgacaagc gttcccatta cacgcccttt accgcccatt agactggttc caccaacaac
     7741 taccgctgca attgcgtcta actcatagga cacacctgcc gttggctgag cagaagagag
     7801 acgtgaagtc acaattaatc cggcaagagc agataaaaaa ccactcacgg caaatacgaa
     7861 gatcttaatt ttattcacat tgatgcctga aagctgggtt gccgattcgt tgccacctaa
     7921 agcgtaaatg taacgcccaa tcggggtgtg tttcaaaata taccaagcta acccaaacac
     7981 taccgccata atccaaatcg gcacaggaat accaaataaa tagcctgtcc caataaacgc
     8041 aaaggcgtct gcttggtcag aaaagccggt gctaatcggt ctgccatcgg tataaaccat
     8101 cgtaatccca cgcaataagg tcattgtgac caaagtcgca ataaatgcct gcactttacc
     8161 tttagcaaca atcgccccac taataccacc aaatgccgtc cctaataata aaaccagcgg
     8221 aatcaccaac aaaatcggca attcagaacc gactaaggtc gctgcaaccg caccggttaa
     8281 ggctaaaacc gaaccgaccg ataaatcaat gcctgcaatt aaaatcacaa aggtcattcc
     8341 gaccgcaata atcgcattca ccgaggtttg gcgtagaata tttaaaatat tatccacgct
     8401 gaaaaaatca gggttaatca ttgaaacaat gacaattaaa ataaataacg ctacaaaaga
     8461 acgttgctcg attaaaaatc tgccaagttg aaactgcttt gtttgagttg ccataaacac
     8521 accttaattt aatcctgtac ttttgccaat agcttctgcc agtagctttt cttgtgtcgc
     8581 ttctgctcgt gaaaattctg cactgatttg cccttcgtgc atcactaaaa tgcggtcgct
     8641 cattcccaac acttccggca tatcggacga aaccatcaaa atactaagcc catctttttt
     8701 aaattcatta attaattgat agatctcttt tttcgccccc acatcaacac cccgtgtcgg
     8761 ctcgtctaaa atcagcacat tcgggcgggt catcaaccct ttagcgatcg ccactttttg
     8821 ctgattacca ccggaaagca gcccgatttg ttgctcccga cttggggttt taatgttaaa
     8881 catctcaata aaatcatcga ccgccaattt ttctgcatcg tggcgaatac tgccggcttt
     8941 ggagaaatga tcgagagagg tcaaagacat attttctttt accgacattc ccaaaatcag
     9001 accatcgcct ttacgatctt ctgaaatata cacaatgccg ttattcaacc catcttgcgg
     9061 acaatggttg gaaatcgctt ttccatttaa ctctatcgag ccggctgttt tcggcaatgc
     9121 accataaagc accttcatta attctgtacg ccctgccccc attaagccgg aaatacccac
     9181 aatttcacct ttgtgtaatt ggaatgacac attattcacc ccacttccac ttaaattctt
     9241 cacttcaagt aataactcgc cacgctcttg gtgtaaatgc ggatattgct cttctaaacg
     9301 gcgaccaacc atcatttcaa ttaactgatc ttcatcaata tcggcaatta ctcgctcgcc
     9361 gataaattgc ccgtctctta gcaccgtcac atcatcacaa atttcaaaaa tctcttttaa
     9421 acgatgggaa atataaacaa tgcctcgatt ttccgctttt aactctcgaa taactttaaa
     9481 caacgatgct gtttctgtat cggttaaagc atcggtcggt tcgtccataa taattacttg
     9541 agactcaaaa ctcagggctt tcgcaatttc caccatttgc tgctcgccaa tggataactc
     9601 cgcacaaagc tgatggctac tgtgttttac cccaagtcgg gcaagcagtt tatccgcctc
     9661 ggcatacatt tttttccaat caatagctcc ccaagcggtt ttgaactcac ggcccaaaaa
     9721 aatattttca gcaatggcta aattaccgac taaattcagc tcttggtgaa taatgctaat
     9781 accggcttct tgtgaatctt tcgggccttt aaaggtaact tctttgccta aatagctaat
     9841 agagccggca tctttgctat aaatccccgt caatactttc atcaaggtgg atttacctgc
     9901 cccattttcg cccattaatg ccattactcg cccaccgtaa acagataagc acgcattgct
     9961 caaggctttc acgccgggaa attctttatc tatcccgctc atttttaata aggtttccat
    10021 cattccaccc taaaacggca cgcccgaata taaaataata ttggcatacg gtgaacactc
    10081 acccgaacgc acaacagctt tactgtaatg tgtctgctct ttaaagattt cgtggttcac
    10141 ataatcaatt tgaattttat tctgttgagc ttgttctaat tgggttaaac gctccaaaag
    10201 agctgctaac acttgcggat ttttatgttt aatttcttca gcaagtagca ctcgttcaac
    10261 aaataattca ctaactacta catcaaatgt ttgtaaaaaa cttggcacac cggcggttaa
    10321 agccaaatcg atccgctcta ttgtgtttgg aatcggcaaa ccggcatcgc aaaccgttaa
    10381 actatcggta tgcccgagtg tcgcaatact gtgcgaaagt tgtgcattta gatttagcgt
    10441 ttttttcata ctaacccctt tattttcgct ccatcacgtt ggaaaatact ccatcgaaac
    10501 gtttcgatgg catcataaaa aattttctta atcggataaa caaccaaatt gcaaaaatgt
    10561 gaagtagttc aaattatttt gctttataat aggtagcatt taatgacaag cggtaagatt
    10621 tgcaaatttt tttgcaaaat cgaccgcttg tttaattttt attttctcaa tataaactat
    10681 ggctttatta attacccaca aatgtaccaa ctgtgatatg tgcttgccgg aatgcccgaa
    10741 cgaggcgatt tcggtgggcg atgatattta tatcatcgat ccggtgttat gtaccgaatg
    10801 tgtcgggcat tatgaaaagc cgacttgcca gaaagtttgc ccgattacca actgcattat
    10861 caaagatcct gataatatcg aaaccgaaga gcagttgtgg gaacgttttg tgatgattca
    10921 tcaccctgat cagatataaa aaaacggtca tactctgatg accgttcgtt ttactcattt
    10981 tctgccaaac tataaggtaa ctcgaccatt tccaacgcta caccattggc tctaaacttg
    11041 gtgttaggtt caacatcttt attcagcacc acttgcaccc acagggtatt ttcatcagtc
    11101 gcactggtca acacagtgcc ggttgctcgc caattttcgc ccagttgcat ttcaatcgca
    11161 gaagcaactt ccggtaagct gatttcgctt tcaaagttgc cggcaagggt aaataaagca
    11221 cgtttattcg ccccacgata tttcgctctc gctaccgttt cttgcccgat gtagcaacct
    11281 ttggtgaatg aaatcgcaga ttcaagtgcc tgtaaattgg ttgcctgtgg aatcagctca
    11341 aactggtttt gttgcaagag aacaggaatg ccgtcttgaa tatccattaa tgtccagagc
    11401 tgttcatcgg cagtcgtttc aagctcttcg ccccaaacaa tggcccgagg ctgtcctgtg
    11461 gttaaacgca aagcggtcat attttcgctt aattttgcaa atgctgcttc acctgccata
    11521 ccataaagtg ggatgtctaa ttccgtgaag gtcacttttg aaaaaaccgc atatttttta
    11581 agttgcgtca gggcttcagg caataagctg cggtgaatga tcgccataaa tttctcattt
    11641 tctgcacgat acaaacgcag taacgcactc attttgcctt tcggatcaca atggctggtt
    11701 agcgtatgtt cgcccaccga aatttttgcc acatcgcagg ttaattgccc ttgaagatat
    11761 ttctcagcat ctacccctgc gatttcaatt aaacaatact gagaaagcgg cacgcagaga
    11821 tttggatagc tctggctcac ttgcttgaaa ttcattgcca taatctgtcc tattctaaat
    11881 tctgaatttg ttcacgcatc tgttcgatca acactttcag ctccaccgcc gaattggtca
    11941 cgtccgcatt aatcgatttt gaggcgagcg tgttggattc acggtttagt tcttgcatca
    12001 taaaatccag tttacgccca accgcaccgc cttttttcag gatattggtg gtttctttaa
    12061 cgtgtaattg caagcggtct aattcctccg ccacatcaac acgttgggca agtaacacca
    12121 tttcttgttc taagcgttgt ggatcaagct gtaaattcag ttcatcgaac cgttgttgta
    12181 aacgatcttt ctgccattgc agaatttccg gcatttgggc ttgtaccttt gcagcctcaa
    12241 ctgaaattgc ttctaaacgt tgtaagatca gggcttgcac gttctcgccc tctctggctc
    12301 gcattgcgat aaaatctgcc agaatttgtt caaagccggc taataaatct tgagcaattt
    12361 ggtctaaatc ttggctttca ttatccacca cgcccgggaa acgtagcaca tcaacaaggt
    12421 tgatttcgcc ttcatttgcg gtttctttta accattttaa tgattgaacc acctgtgcgg
    12481 catattcttt gtttaacgca atttcactgt tttgggtttt gcttaaatca atgcgtaagc
    12541 tacactctac tttgcctcgt gtcagtgcag aacgtaaacg ctcacgcaag gtcatttcta
    12601 ggttgcgaaa ctgctccggc aaacgaaaat aggtttctaa aaagcgttga tttaccgagc
    12661 gaatttccca caccgcattg ccccactctt ttttcatttc taaatgggca aatgctgtca
    12721 tactataaat cattggtatt ccttgtgttg gtattcctgt gtttttataa gtaaagctct
    12781 ctccccttga gggagagaga ccgaaaaata tttcgttcag aaatattttt cagagagagg
    12841 gaggaatttg taaaatttga gataaaaata accgcttacc cctctccctg atttttcttc
    12901 tgaacgaaga aaaatccgtc cctctcccac aaggggcgag ggctatgtaa attctttgct
    12961 aaagaaaaat cacattttac tgtgttcttt gctaaaatgg taaaaatttt agcaaaagga
    13021 aaagaaaatg cgtccaaata atcgagcaaa caaccaagtt agagaaatta aaattacccg
    13081 taactacact cgctatgccg aaggctcggt attaattgag tttggcgaaa ccaaagtatt
    13141 gtgtaacgct acggtagaag aaagcgtgcc acgcttttta aaaggtcagc aacaaggttg
    13201 ggttaccgca gaatatggta tgttgccacg agccacccac tctcgcactc agcgtgaagc
    13261 ggcaaaaggc aaacaaggcg gacgcacaat ggaaatccaa cgcttgattg cccgttctct
    13321 gcgtgcggtg gtagatttaa aagccttagg cgaacgtacc gttaccgtag attgtgatgt
    13381 tattcaagcc gatggaggca ctcgcaccgc ctcaattacc ggtgcgtgcg tagcattgta
    13441 cgatgcaatg aataagttag tagctgatgg aacactaaaa actaacccaa tgaaaggttt
    13501 agtcgcagca atttctgtcg gtattgtagc aggcgaagcg gtgtgcgatt tagaatatct
    13561 ggaagattcc aacgctgaaa ctgatatgaa cgtggtgatg gtcgaagatg gtcgtttagt
    13621 ggaagtacaa ggcacggcag aaggcgaacc gttctcgcac caagaattac tgacattgct
    13681 agatttagcg aagcaaggca ttagccagct agttgaagct caacgtaaag cgttagctga
    13741 ataattcact tctctttttg attttctttt taaataaaat ctacatctga caaaacagaa
    13801 taaccgttct gattcagatg tagatttttt tatttccctt ttcaaaatac actcaatcat
    13861 aaaataacaa ttattttttt atggaaatat tgcacttctt acaaaatatc tgtaaatttc
    13921 attgccatta tttttttatg gctatttatt ctagaaggac tctaaacgtg ttaaagaaaa
    13981 attatctcac tgtatcaatt ctccttgcca ttagtggagt aggctacgct aatgaaatct
    14041 ctttagagac tattactgtt gatggaaata cgccttcaac caaagggaaa ttactaggtg
    14101 gtgaactaaa tagcaatgaa tctgttgttg atgaaaaaaa ttaaaacaag gtagtattac
    14161 attaggtaac gctttatctg gtgaattagg cattcattca agccagttcg gaggcggtgc
    14221 aagtacccca attattcgtg ggcaagagag taaacgtgca aaaatcttac aaaataatgg
    14281 cgaaaactta gatatgtcgg gaatgtctcc tgatcatgca gtaaccgtag atgcgctact
    14341 tgctaaacgt attgaaattt tacgtgatcc aaccacttta ctttacagtg caggtaatac
    14401 ggcaggtgta attaatgtgg tagacaataa aattccaacc gctattcccg aaaaaggcta
    14461 tgaggggcaa tttggtgtgc gttttggctc agccagtaaa gagcgtttaa cctatgcagg
    14521 ctcaaccttt gcccttggaa atcatttagc cttgcgggta cagggaatgt ataacaaagc
    14581 ttccgaatac tatgctccac actttacgat tgaaggcaaa ccttaccacc gcgtaccaga
    14641 tagcgatgta caatcacaaa ccggcacagt aggcctttct tggattggag agcgaggaca
    14701 tcttggtatt gcttacactg atcgccgtga taaatatgga ttaattggtc acacacacaa
    14761 atacgatcac tatactatta gtattattcg ccaagccgtt atgtttgcaa aaggttattt
    14821 acgtttttat ccgcaccttg cagaagaagg agatattgac tataacaacc ctggtatccg
    14881 tttactgcat actcatattc cgggaggctc acattatgga caagatactc acgagcacgg
    14941 caaaccttgg attgatatgc actccaagcg gtatgatatt gatggaagtt tgcaaaatcc
    15001 acttcctggt tttgaagaag ccaaaatatc agctaactat gtagattact atcatgatga
    15061 aaaagatgga aaaagagttg aaaattactt caagaacaaa ggaaaaaatc tacgtttcga
    15121 attggttcac aaagagtgga aagggctaaa aggagctatt ggtgtgcaat ataccaacca
    15181 atctacctca gcacttgcac ttgaagcttc acgagctgca aaagtattta ataaacagcc
    15241 tttactcaat aatccaaaaa caaaattatg gagtctcttt gcgattgaac gccttaattt
    15301 aggtgacttt acctttgagt taagtgggcg ggcagaacgt caaaaaatag caatggatta
    15361 tgatgtgaaa ttaattgatc gctggctagg ctttaataca cctatgccaa acttggaccc
    15421 acataaagac aaaggttatt cttatagctt tgcaactcat tggtatttcg caccaaacca
    15481 taagttaaca ttaaatgctg cacatcaaga acgtttacct aatgctcagg aactctatgc
    15541 tcatggtaaa cacattgctt taaatgcatt tgaggctggc aataaaaatc tagaaaaaga
    15601 gcgttctaac caaattgagc tatcgttagc ttatgttggc gacaaatggg attataaatt
    15661 aaatctctac cacacccgct atggcaacta tatttaccca ttaactctta atgataatcg
    15721 tggacctaaa tcttttaccg atgaatataa cttgaaagtg aatagatatt atcaaggcga
    15781 agctcgtttt agtggggcag aaggcgaaat tggttatcta tttacaccaa attatcgctt
    15841 agccgtattc ggagactatg tccgtggaaa gttagtcaac ttacctaata ttgcaatgag
    15901 ttataacatt tggacaggtg aagttgacaa atgggcttct cagccagaca tttctgcacc
    15961 tcgtatacca ccactacgtt taggagcaag atttaatgct gacttcaacc taaactggtc
    16021 tggaatgtta gaatattacc gagtatttgc tcagaaaaaa gtctcgaaat acgaacaagt
    16081 tacccctggc catcatcaag taaaccttgg cgtaacctat agtaatcatt ttaatcaaac
    16141 agaataccaa gtattcctta aagtggataa cttgcttaat cagaaaatgt accaacatgc
    16201 ctcatatcta ccacatattc cacaaatggg tagaaatgca atgcttggaa tgaatatcag
    16261 tttttaattt gtaaatctct acaaaaatat aaccgcttgt aaatttctat ctacaagcgg
    16321 ttactttcag tggatttttt gcaattagag atcgtcaatt accaagtaaa ttttatttac
    16381 cgggccgtga acgccaacta ctttaatcaa ctcaatatcc gcagtcgccg atgggcctga
    16441 gatgatattc acacaagatg gcattctttc acctcgttgg gctttttcgt gcagaatttg
    16501 tgcaagctgt gccacacgag gtaacactgt acttttgcgt aacacaacca ccgatttttc
    16561 gggcaataag ctcactgaac gcccaaattc tttatcggaa aacagtacaa taccgccaga
    16621 ctctgccaag ccatattcac cgtaaaccac accgatatta gcagttctgg ctttttcaaa
    16681 gttggtttca gcttggttga aatcccacac atagctgtct tcgtattttg cttgaatggc
    16741 tgcggtaatc ccaagatctt ttaaacgttg atcgttattc acgatcacac tcgccccgcc
    16801 atatttttca caaatatcaa taatggcttg tggtaaatcc gcctcttttg cctctactac
    16861 atctgccatc atcactcggg caaaatcgat aaactcttgg caaagttgtg gttgagggcg
    16921 atcggttaaa cgggtaatcg cgtggttgtt ttccaacaca ggaattggct caggcacatt
    16981 ttggcgtggt ctgcccatac gctgtgccaa tttatttaag aaattttcac gattttgtaa
    17041 atccattttc ttatcctctg ttattaaacc attcacggaa actttcgcct tcggcagtcg
    17101 gtaaatcacg ggctttcgtc cattcaccta acgccccaaa attcaccggt gctttgccgt
    17161 ttttaatcaa tttgcttgcc actttcgccc ccacttttac gccgactttc caaagggttg
    17221 ggtgtgagtt agcgaagtta aagccaaaaa tagacaagcg ttctgccatt ggcgttaagc
    17281 cggcatccgc aattttctca cggtgtttta agataagctg tgccagtgga attttcactg
    17341 gacaaacact gttacaagcg gtacaaagtg agcaagcata cggcaattct ttaaactctt
    17401 cgtagccacc gagcaatggc gaaataactg aaccaatcgg gcccggatag attgaaccat
    17461 agccgtgacc gccaatttgg cgatacgccg ggcaagtgtt caaacatgca ccacagcgga
    17521 tacaacgcaa cacttcttgg aattcgcttt ctaagatttt agaacgaccg ttatcgacaa
    17581 tgaccaagtg gaactcttcc ggaccatcgg tttcgccttc aagtctagga cctgtcagcc
    17641 aagtgttgta agcggtgagt tttgccccta ccgcactgcg agccagcatg gtaattaata
    17701 catcaacctc tttaaaggtt ggggcgatac gttccatacc cattactgca atatgcgttt
    17761 tcggcacagt tgttgccata cgcagattac cttcgttggt cactaaacaa accgagccgg
    17821 tttccggcac cgcaaagtta cagcctgaaa taccgatgtc tgcctctaag aaatcttcac
    17881 ggattttttg gcggacgaat gcagtcatct cttcaggtgt ttccgaacct tgataaccta
    17941 gcacatcgtg catttcttgg cggattctgt ggcgatcttt gtggattgca ggtacaacaa
    18001 tatgagaagg tttatcgccc acaatttgca ataaatattc gcccaaatcg gtttcaacca
    18061 ctttaatgcc ttctgcttct aaaacgtggt tcatcccaat ctcttcggtt accatcgact
    18121 tcgattttac gattttcttc gcatttttag ctttcgccac gtttttgatg taatcagtgg
    18181 cttcttcggc ggtttcggca aagaaaacgt gtccgccgtt ttgggtgact ttttcgctta
    18241 attggtagag ataagcgtct aaattggcta aaacgtggtt acgaattgct ttcgcatcat
    18301 cacgccactc ttcccagttg cccagctcat ccaccatacg ctgacggttt gcaccgattg
    18361 tttcctgagc cttaactaag gctttacgca caatctcgtt attaacttgc tgctcaacac
    18421 gttgtttaaa cggcagggtg ttagtttgta aataagacat cttattttcc tccctgcatt
    18481 aacacttcgg caatgtgcat cactttgatt ggcttacctt cacggcttaa acgaccgcca
    18541 atgttcatca agcagcttac atctgccccg attaaataat ccggctcatc ggtatctaca
    18601 tttgcgactt tctcttttac catctcgccg gaaatttctg ccattttgac cgagaatgtg
    18661 ccaccaaaac cacagcaagt ttcttggttt ttgattggta ataactctaa ccctttaacg
    18721 tgctgtaata aagcaatagg ctcatcttta atccccagct tacggaataa gctgcaagac
    18781 gggtgataaa ctgctttgcc cggtaaataa gccccaacat ctttcacgcc cagtttgttc
    18841 acaataaaat cggttaaatc atagaaacga tcagccactt tcttcgcacg ttctgcccat
    18901 tctttttcgc caaagcgttc aaaatgatcc ggataggttt tgatcgcata tacacaagaa
    18961 cctgccgggg cgacaatcgg gtaatcatta gcttcaaagg tttcaaccaa gtttttcata
    19021 cctgctaaag cttgcttagt gtaaccgctg ttgatcgcag gttgtccaca gcaaccttgt
    19081 ttttctaaga aagtgatttt acaacctaat ttttccaata aaagcacggt attttttgca
    19141 acccctgctt tcattacatc tgcaatgcag gttacgtaaa aattaacgtt cataaagaac
    19201 tcccacagta aatataaata agaattaaac tcaaaaaatg ccgttctaag acggcgaaag
    19261 gaagaggtgg atttgcaaaa aatttgctaa atctcaccgc ttcctttcta aatcaagtaa
    19321 gctgattatt aacttattat aggttataga acataggtac tataaacaat gccgaaatcg
    19381 cagcaataac gccatacacg aacattggca cggctgtttt cttaataata ttgccttctt
    19441 gtttctcaat gccggtaaca gaacacacag ccacgatgtt gttaatacac accatattcc
    19501 ccattgcacc accaactgat tgcaatgcaa gaattaaggt aacagataac ccgacttgct
    19561 gtgccgttgc atattgtact gttccgaagg ttaagttaga taccgtattt gaccctgaga
    19621 agaacgcacc aattgcacct aagaacgagg caaataatgt ccaagattga ccggtaaatt
    19681 ctgcgaagtt tttaccaatg atctgaacca ttgagtctac accaccaatt aacattaatt
    19741 ttaccatcac aatggcacct aaaagtgcta agaatggttt tttcacttgt ttaaatgaag
    19801 tgccaaaaat ctcttgagta tttttacctg ataccgagaa aatcggtaag caaattaata
    19861 cggtcacaac aaatggaatc aacgcaggaa catacagtaa tttatagcta gttgctacat
    19921 tcgtacctaa aatatttttc agtgcaaaaa ttaagccttg gctaatttca aagttagcga
    19981 aaccaagcga actgacaatc caagctgttg catcatttag cattgctttt aatggaagtt
    20041 gctgaatacg ggtgattacc aaaatgaaga tcagtaaccc tgttggtaat aatgcttttg
    20101 ccacttcacc aaaggtcgct ttatcgccgt caaggtggtt ctcgcttttc gctaaaccaa
    20161 tacccatatt tgctacccag actgacacca ataaaccaat cgccccggca actaatgatg
    20221 ggaattcgta gttaaattga gcaataatga agtaaggaat gacacaggca aaaatgctga
    20281 tataaataaa cacgatattt tgacgaattt ctttccagct cacaattaaa cgcaatgcca
    20341 taactggaat aataaacgca gcaatagagt ggatcagtgc agtaatagaa ccaatttcaa
    20401 gcacttgtgc atcggttagt aaaccatctt ttaataatgg tcccatacca aaccaagttg
    20461 gtgtgccaac cgcaccaaat gacaccggca cagagttcat tactaaggct aacattgcca
    20521 cttgtaacgg tttaaagcct aaaccaacca gaattggagc tgcaattgcc gccggcgtac
    20581 cgaaacctga tgcgccttca atcataaatg caaatgccca accgataatc atcaactgtg
    20641 ccaccggatt cgggttaatt gtccctaacc atttacgcat agtgttggtt gcacctgaaa
    20701 cttcagagaa acggttaaat aaaatcgccc cgaaaataac ggtaattggg gttaatacat
    20761 cacctaaacc ggcaataata ttggcaaaga ttaacgtggt atcattacca aaataggtaa
    20821 gctgaagcac aaaaattaat aacgccgtaa gtggtaaagc cacataagac ggtaacgcgt
    20881 tacgttttac cattaaataa atgagcaaaa caattggaaa tacgctcagg aatagagcca
    20941 tactgcacct ctttatatga ttataaaatg acctaactgg tcggataggt gcgaattgta
    21001 ctcttaaaaa aaaactaatg taactaggtt gttacaattt tgtgatctaa ctcgcatttt
    21061 taatgattgt atggttaaaa aagagccata tttattttca tttaatactt aatagttagc
    21121 cctatttaag acatttttac cgaatcgagc aatatgcaat taattaacaa aaaaaggccg
    21181 cttgcagatc acagatcaac aagcggtctt ttttaggcaa aaatttgcaa attaaacatt
    21241 gaaacggaag tgcattacat cgccgtcttg aacaatataa tctttacctt ccaaacgcca
    21301 tttacccgct tcttttgcac cggcttcacc tttattgtct atgaagtctt ggtaagcaat
    21361 tacttccgca cgaataaagc ctttctcaaa gtcagtgtga atcacggctg ctgcttttgg
    21421 agcggttgca cctaccgaaa ccgtccacgc acgcacttct tttacccctg cggtaaagta
    21481 ggtttgtaag ttaagtaaac ggtagcctgc acgaataaca cggtttaagc ccggctcttc
    21541 aatgcctaaa tcttgtagaa attccacttt ttcttcgtca tcaagctcgg caatttccga
    21601 ttcaatcgct gcacacaccg gtacaaccac cgccccttct ttttcggcaa tttcacgcac
    21661 acggtcaaga taagggttat tttcaaaacc gtcttcgttc acgttggcaa tatacattgt
    21721 cggttttaaa gttaagaagt tgtagccctt aatagcgtgc agttcatcct tatctaaatc
    21781 taccgaacga atcataccgg cattttcaag cacaggtagg attttttcca taatcgataa
    21841 ttcaaatttt gcgtctttat cgccaccttt cgcacgtttt tgtaaacgct gaatggcacg
    21901 ctcgcaactg tctaaatcgg caagtgccaa ttcggtattg atgatttcaa tatcatcagc
    21961 tgggtcaatt ttccccgcaa cgtgaacgat gtcatcattt tcaaaacaac gcacaacgtg
    22021 gccaatcgca tcagtttcac gaatattggc taagaattta ttacctaaac cttcgccttt
    22081 gcttgcacct gccactaagc cggcaatatc cacaaattcc attgtagttg gtaacactcg
    22141 ctcaggtttc acaatttccg ccaacgcatc taagcgaggg tcaggcattg gtaccacacc
    22201 ggtatttggc tcaatcgtac agaacggata gtttgctgcc tcaatacctg ctttagttaa
    22261 tgcattgaaa agggtcgatt taccgacatt tggtaaaccc acaataccac atttaaatcc
    22321 cattttttgt tccttagaat tcccctctcc ccttgcggga gagggataaa tttgagcttc
    22381 gttcagaagc gaaaatgagg gagagggcga aattgcaata atttcctcaa atatgaccgc
    22441 tcccctctct ctgaaaaata cttctgaacg aagtattttt cggtctctct cccacaaggg
    22501 agagagtttt aatttgcttt aaaactattt aaacggttag ttgccttaac cattccgtct
    22561 ttaaataaaa cttctacgca acgtgcggct tcatcaaccg cactattcag taatgtctga
    22621 tcgcttggtg aaggcttgcc cagcacataa ttcgccacta agtctttatg ccccgggtgt
    22681 ccaataccaa ttcgcacacg gtaaaactct ttattattgc caagggcggc aataatatct
    22741 ttcaagccgt tatgaccacc gtgtccgccg ccttttttca atttcaccga accgggtggt
    22801 aaatccaatt catcgtgagc gaccaaaatt tcttccggtt taatccgata aaaattggct
    22861 aacgctccca ctgctttacc acttaaattc ataaaagtag tcggcactaa taaacggact
    22921 tcgccttgag cggtattaat ttttgctact ttgccaaaat atttcggctc ttcttttagg
    22981 ctaacgttat atattcgggc aagttcgtta atcagccact cgcctgcatt atggcgggtt
    23041 tcttcatatt ttacccccgg gttcgccagc ccgacaatta atttaatttc tgacacaatc
    23101 ttgtctcaat tcatttaatt taaaaggcag tattttagag aaaaaccgct attttctcaa
    23161 ggcaaccatt aatcatattg tctatacgga tttggtacgc attgatactt cgctaacatc
    23221 gattcagtga aatcggtgcg tgaagcagcg ttatcattgt ttaaactaac cacaccaatt
    23281 cgcttgcctc tgcaatcccc tttagcaata aaggcaagat tataacccgc ctcacgggta
    23341 taacctgtct tactcactaa tgcctgatag gattgggaac gaaccatact gttggtgttt
    23401 ttcatagaga aataacgacc acctgcataa acactcacta atggcgaatt agacaattgc
    23461 tgaatttcag gcttacttgc cgcatagcct gccaatttag caagatcaac caccgttgaa
    23521 acattatccg aagataagcc tgagctatcg ccaaagtagg tttgagtcat accgatttca
    23581 cgggctttgc tgttcattcg agccaaaaat tgggctttat tcaaatgtgt tgcgtgggca
    23641 agggcgtgag cggcatagtt atcggagcga actagcatcg cttttaacaa ttcactacag
    23701 gcaatgttaa gatttttcgg caatgggctg gtcgtgcctt ttaagaaatc agcatctgac
    23761 ggcaaaattt gggtttggca actcgcccca tagcggtttt cttctaagaa aacgactgct
    23821 gtcattaatt ttgtgaccga agcaatcggg cgaactaaat tgaaattctt accttccaaa
    23881 aatttctttt ggtttaagtc aaacaccaca taagcggaat tttcggttgg aatataagca
    23941 gcggttgctt taatccgtgg tgtgcttttc ctttttgccg gctgggagga acaggcgctt
    24001 aacaccagag ccgcaatcat aacaggaata aattttttca tcataataga ttcatcgata
    24061 atacatcgat aataaagtca aagctggtta ttctaccctg tttccaaaat tgtgccaaag
    24121 caagcggtcg atttttacaa aatttttgca aatctagccg attttgcaaa atttccgcca
    24181 aatttaaccg cttgccctct cgcctcaaat cagcgaaaat aacgcttaat tttttggcgg
    24241 actttccgcc ctttttattt taattggttg agaaaaatgt catacccaca agaagttaat
    24301 aaacgtcgca cctttgcgat tatttcccac cccgatgcgg gtaaaaccac cattaccgaa
    24361 aaagtattgc tctacggaaa tgcaatccaa actgccggct cggtaaaagg caaaggctcg
    24421 gcacaacacg ctaaatccga ctggatggag atggaaaaac aacgtggaat ttcgattacc
    24481 acctccgtga tgcagttccc gtacaatgat tgcttggtaa acttactcga tacaccgggg
    24541 cacgaagact tctcggaaga tacttatcgt actttgactg cggtagatag ctgcttaatg
    24601 gttatcgact cggcaaaagg ggttgaggaa cgcaccatta aattaatgga agtgacccgc
    24661 ttgcgtgata cgccaatcct aacctttatg aacaagctag accgtgatat tcgtgacccg
    24721 atggagctgt tagatgaagt ggaaagcgtg ctgaaaatca aatgtgcgcc gatcacttgg
    24781 ccgattggtt gcggaaaatt gtttaaaggg gtatatcacc tttacaagga cgaaacctac
    24841 ttataccaaa ccggacaagg tcataccatt caagaagtac gagtggttaa aggcttaaat
    24901 aatccggaac tggatcaagc cgttggcgat gatttagccc agcagttgcg tgatgaatta
    24961 gagctggtac aaggcgcttc gcacgaattc gatcacgccg aatttatcaa aggcgagctg
    25021 acaccggttt tctttggcac tgcactgggt aacttcgggg tcaatcattt ccttgacggt
    25081 ttaaccgaat gggcaccggc accacaagcc cgtcaatcgg acgaacgtga agtttcacca
    25141 agcgaggaaa aattcagcgg tttcgtattt aaaattcaag cgaatatgga tccgaaacac
    25201 cgagatcgag ttgcttttat gcgtgtcgtt tcaggtaaat atgaaaaagg aatgaagctt
    25261 aaacacgtcc gtatcggcaa agatgtggtg atctccgatg ccttaacctt tatggcgggc
    25321 gaccgttcac aagccgaaga agcctacgcc ggcgatatta tcggcttgca caatcacggc
    25381 acgatccaaa ttggtgatac tttcacccaa ggcgaaaatt tcaaattcac cggtattccg
    25441 aacttcgccc ctgagctgtt ccgccgaatc cgcctgcgtg atccgctcaa acagaaacaa
    25501 ctgctcaaag gcttggtaca actttccgaa gagggtgcgg tgcaagtatt ccgtccgtta
    25561 atcaacaacg atttgatcgt gggagcggtt ggggtgctac agtttgatgt ggtggtttca
    25621 cggctgaaaa ccgaatacgg tgtagaggca atttatgaaa ccgtaaacgt tgccacagcc
    25681 cgttgggtcg aaggcaaaga tgccaaaaaa tttgaagagt tcaaacgcaa aaacgaggca
    25741 aaccttgccc tagacggcgg agacaacctc acctacattg ctccgacaat ggtgaactta
    25801 aacctcgccc aagaacgtta ccctgacgta cagttcttta aaacgagaga gcactaaaac
    25861 caataggggc gaaaaatctt tcgcccctac aaataaagca caagcggtca atttttttcc
    25921 gaattttaca atactaggca ttctgttcct caaataacct aaatattccc ctatcaacaa
    25981 tccttatctt gagattattc tgcctattaa ttaaccactc aaaaataccc tcgcagaaaa
    26041 ctctactttt tttatggaaa tatgctaaag ttcgccaata ttcatagccc tgattttttt
    26101 atggagaaaa taaaatgaaa aaatggttga ttccattaac tgtcgctgcg ttctgtgttt
    26161 ctgcttgcga tgataagaac agcactcaag caaccgcaga aaaaccgcaa gtagagaata
    26221 ctcaatcgca aaaaaatgcg gaaatattac cgcttgcaac cgtggttgcc ccatgggaaa
    26281 tcaatagcct tgacccgaat caatcaggcg taattttcca gcgtatgaac ttagcggaaa
    26341 cattggtcga agctgatctt aacgggaatt taattccggc attggccact gactggcgca
    26401 gtaacgaaga gggaacaatc tggcgtttta ccttgcgtga aggggtaaaa tcccataacg
    26461 atcaagtact taccgcacaa gcagtggtaa atagtttgaa tatcgcaaaa agcaaaccgg
    26521 gtgtgttagc aaaagccttt atcaaggaaa ttcgagcggt agataacaaa gtggaaattg
    26581 agctaactaa agcttttgtg ccgtttcctt cctttttaac acactacacc gccttaattt
    26641 tggcacctga aagctataat gaaaaaggcg aagtgaccca aattatcggt acaggtgcgt
    26701 ttaaacccac aaaaattgaa gctccgcaga aattggaagc ggtgcaattt gagggctatt
    26761 ggggcaaaaa accgcaagtt cagcaagcca attatttagc cagcagccgt agcgaaaccc
    26821 gtatgttaat ggcacaaagc gagccgtcat cactggtatt taatttagat accgccagtg
    26881 tagcaaggct gaaagccgat cctaacctgc aattagtcag cggatctatt gcccgtacta
    26941 ttcagttgaa aatggacgtg gcaaagccgt tttttaacga cttagcgatt cgccaagcct
    27001 tatcgcaagc gattaatcgc aaggcgattg ctgagcaggt cttaaaaatt gagaacggag
    27061 ctgccgatca aattttaccg aaagcctttg ccgactggcg tgttgatacc gcagaacaag
    27121 tggtcgatat tgcaaaaatt aaacaaaatc tgaccgcttc cggctatacc tttgatgaac
    27181 aaggtcgctt aaccaaagac ggcaaaccgt ttagctttac catgcgcacc ttctcagatc
    27241 gtcctgaatt accggtgatt gctactatct tacaagctca atggaaacaa attggcgtgg
    27301 aagtgaatgt ttcggtgggt aatttcagcg aaattccggc ggggcatcaa gacggcagtt
    27361 tagaaatggc tctttatgcc ttaaattatg gcaaaacctt agatccatat ggcgtaattg
    27421 cctccgactt cgccaatggt ggcagtgatt ggggggtaat gaattggcaa aatactgagg
    27481 tagacaatgc agtcaaatcg ctcgaaaccg agcgtgaccc gcaaaaagcg aaagcattaa
    27541 agcaaacggt tagcaaaatt atttacaatg agttgccaat cattccagtg gtttattacc
    27601 aacaaaatgt ggtggcacat aaagaagtga aaaatgtgac gctagatcca tttgaaagac
    27661 gcttcttttt ggagttatta agtaagtagt ttaattcaaa atactcctcg ctttagaaaa
    27721 gggaaggtag gatttttcag tagtaatttg cgctcttagg tgaataaata gtgacagaat
    27781 tatcgttttt tctcattttt cacctatttt ctccgcttat ttcttctgcc aaatcttccc
    27841 ttcccctctt tgctaaagag ggggatcaga acgcataaaa tcatcttttt aataaatgaa
    27901 ataatacaat gcacaaaatt ctcttccgcc gtcttatcca aattctactg gtgatttggt
    27961 cggttggcac actcacattt atcctcaccc gccaactttc gggtgatatg gcataccgca
    28021 ttgctgccag ccgctatggt tatgatcaag cagatagtgc tgctgctgag gctgtgcgtg
    28081 ccgagctggg attagaccaa ccttggtggc aaagctactt cagctggcta agtgacttgg
    28141 ctcaatttaa tttaggcaaa tcattggtga ccggtgatcc ggtctggtct gaaattcagc
    28201 accaattcgg gcatacctta agccttgcga ttgtggcact tatcttagca atccttatcg
    28261 ggcctccgct cggtttgtta gccgcccgta agccaaacgg cttttttgac cgcttgacac
    28321 tggtattcag taccctgttt cgctccgtgc cggcatttat tattgcgatt ggcttgatta
    28381 cgctgttttc cgctcaacta aaatggctac ctgccggcgg atacggcagt tggcaacatt
    28441 ttatcttgcc tgccttaacg cttgcgattg gcttgagtac ggtttcggta cgagtcaccc
    28501 gttctgcaat ggttcaggta aaaggctcag aattttacca attttcacaa ttaaaaggct
    28561 taagccgttg gcataccttt ttacgtcacg gtttgccgaa tattgccgtg ccggtcattg
    28621 cctaccacgc agtacaatta gtttatttaa ttgaaggcgt tgtggtggtc gaaagcctat
    28681 ttgcttggcc cggcagcgga cacgcactgg ttcacgccat cattgcccgt gatgtgccga
    28741 tgattcaagg tacaacgctc gtgatgggcg gattgtttgt tgtattaaac accattgccg
    28801 atctattaag tgcttggatt gacccacgaa ttaagcgata ggacatcaag atgaaaattt
    28861 caatttcaca atacttaggc ggcactattc tccttgcaat gttgggattt gcctttttac
    28921 agccttattt ttacccgatg gatattggct ttcaagattt aaccaatatc ctttccaatc
    28981 caaatgaaat cgcttggttc ggcaccgatc atctcgggcg ggatatgctt gcccgtcttg
    29041 cctctgctat tcgtctttcg tttggcttat cactgtttag cgtgatttgt gccttaattg
    29101 caggcttaat taccggcatt atggcaggct ttttcggtgg ctggattgac cgcattttca
    29161 gctttatttg tgatctagtg atggcactcc ccggcttact tttagtattg ctctttgccg
    29221 ccctttctcc cggctcattt tggacgctct atttagggat ttcattggta atgtgggtgg
    29281 aatttttccg tgtgatccgc tctatcagct caacaatggc aaacagctcg gaaattcaag
    29341 cctcacgcct aatgggaatg ggctggtttt atagcttcaa acgccactta ttgccccgtt
    29401 tattaccgat gattgccact ttatcggcat tctcgctcgg caatgcgatt ttagctctcg
    29461 ccacacttgg ctttgtcagc gtagggcttc gcccgcctac agcagaatta ggcttgatga
    29521 tgaccgaact attcccttac tactacgaag caccgctgat atttttgcaa ccagtggttg
    29581 ccgttttctt aatggtactc agcttacaat tattgtctag aaaaattaaa taatgcgtag
    29641 gggcaggtcc tgtgcctgcc caaaattctt attatattta tgggcgggca cagggcccgc
    29701 ccctacagta ataaaatgaa gatgaaatta ctcaatatcc aaaacctatc tgttgaaacc
    29761 gaaaacagat tacagctggt cgaaccgatt agcctacaat taaaggcagg aaaaaatatt
    29821 actatcttag gcgaaaccgg ctcaggcaaa agcctgctga ttcaagcgat tatgggggcg
    29881 ttacccgacg gcttaatcgc aagcggtgaa atttcggtaa aaaattgcaa aatttccacc
    29941 gaatccgacc gcttgcaaac attgtggggt aaaaccttgg taatgctgcc acaagagcct
    30001 cgccgctcgc ttaatccgat tatggcaatc ggcaagcagt tgtgggaaag ttttcactat
    30061 gtggcaggca aaccatcatc tcaagccaaa acggaaagca aagcctattt agccaaactt
    30121 gggctgggcg aatcggttga aaactaccca caccagcttt ccggtggaat ggctcaacgt
    30181 gcctcttttg cgattgcaac tgccgccggt ggcaaaattt tacttgccga tgagccgacc
    30241 aaagggcttg acccaaccag taaaggcaaa gtgattgaac tgttaaaatc cgcctaccaa
    30301 aacggcggag gcttgctcac cattactcac gatattgaag ttgccgagca actcggtggc
    30361 actattttag tgatgaaaaa aggcgaactg ttggagcaag gtgaggcaaa agcgttgtta
    30421 aataacccac aacaccctta caccaaagca cttatcagtg ccgatccaaa acattggcaa
    30481 ccattgcaag atctgcaaaa tttaagccaa aaacaaccgc ttgtttcggt taaaaatttg
    30541 agtattgccc gtggtaagaa aacgctgttt agcaaccttt cctttgactt acacaaaggc
    30601 gaagtgcttg ggattgtcgg gcatagtggg attggcaaaa gctcgcttgc cgatgtactt
    30661 tgtggtttgc ttaagccgaa atcgggcgaa gttgtgtggc acagccacag ccataaaaaa
    30721 caccaagtgt tgaagcttta ccaagaccca ccggaagcct ttgctccgaa tgtcagtcta
    30781 aaaaccttgc ttgatgatgt gattaacaag caccaattag atcgactgcc gattccaagt
    30841 ttactgcaac aactttcgct caacccagaa attttgcaac gcaatgcgga aaatgtctcc
    30901 ggcggcgagc tacaacgagt agcaattttg cgagccttgc tcttagaacc ggtactactg
    30961 tttgccgatg aagtcacttc tcggcttgac ccaatcacac aacaagaaac gatagaattg
    31021 ctgatcaacc agtgccgagc gagaaattgc agtctgattt tggtcagtca cgatccttat
    31081 ctaattgaga aatcgtgcga taaagtgatt aatttggaag agtatgtggg ctaacaagcg
    31141 gttcaatttc tgagattttt tgcggctcta aaaacaaaaa tgcgaagaca tcagttcttc
    31201 gcatttttct tacttattcc ttattgccca gccagcttct gccgtacaat ttcaaacaga
    31261 cagaccccgg ttgcaactga gacattcaaa gaagatactg agcccgccat tggaatgctg
    31321 ataagctggt cgcaatgctc acgggtaagg cgacgcattc cgtcaccttc tgcccccata
    31381 actaacgcaa tcgagccggt taattttgct tcataaatgc ccgattccgc ctcacctgcc
    31441 gtgccgacaa tccagacatt atgccgttct tgtaaatctc gcattgtgcg agccagattg
    31501 gtaactcgaa tcagtggcat cacttccgct gccccacagg cgactttgcg agcggttggt
    31561 gtaagctgag cagatttatc tttcggcaca ataaccgcat caacccctgc cgcatcagcg
    31621 gtacgcaaac aagcccctag gttgtgaggg tcggtcacgc catctaaaat caacaagagt
    31681 ggatttttct tttggcttaa gatcgcctct aaatcgtgtt cattcagctc tttttgtggc
    31741 acgactctgg caataatccc ttgatgcact tcaccttgcg atttgttatc taaggtttgg
    31801 cggttcactt gttgaattgc cacccctaaa cgttgtaatt catttaatag tggcattaag
    31861 cgtttatctt cacgcccttt tagcaccagc acttcaatta aacgctcagg tgcattatcc
    31921 caaaaggctt tcactgcgtg aatgccataa atttgttcgc tcatatttta tccttaataa
    31981 ttgggcgaac ccatcagctc gcccatataa atacctaact aaagcaacat cttcacaatt
    32041 ttatccaact taaccctgcc gaattttttc agcaatttac gcacattttc agggtaatcg
    32101 gttaaaactt ccaaatcact gtagtgagtt aaaatctgcg tatgttggca aatttggttt
    32161 aactccgttt ctgctttttc acttaattga tgttgaggat cggaaattaa aattgcattt
    32221 tcggcatcta accgccacgc tcttgggtta aggttattgc cggtcagcaa aatatagcgg
    32281 ttatccaccc aaaccccttt taagtggtag ctgttttcgc catctttcca taagcgaatg
    32341 gttaactgtt tattttgtac ataaccgtcc aaccgttttg caaaggctcg taagttcttt
    32401 tcatacaaat aaggcagagc cgatgccatc gtgaattttt cgtccggctt ggtgtagaaa
    32461 tcattagcgg ttttatcccc cacaataatt tcaaccgatt tgccgtttgc caatagccat
    32521 tcaatacggg ttctcagaga atgcggaaaa ttaaaatacg gagtgcaaat cgttaatttc
    32581 tgctcagttt gataaaacaa cgcttcaatc actttattta actgattctt acgtcgccct
    32641 aagcctacta aaggagaaac cgctaagcga ccattttcag caacaccgtt aaataaatac
    32701 gcttcccgac ttaattgttt gcggaaatgc ttaatttgcg cacgaatttc agccgttttc
    32761 gggcgatttt ccgtatctaa acgttttacc gcttcattgg ttaaaagatg ctgttgaata
    32821 aacgtcaccc agctatcggc aagaacttta ttttcaatga cgtggtaacg gtcataacgg
    32881 taacgttcaa attgatgcaa atacacatta ttaatgcttg ctccgctata caaaatcgta
    32941 tcgtcaaata cgaagccttt caaatgcaat acaccaaaca cttctcgtcc gttaatcgac
    33001 acaccgtaaa aggcaatctc ttgccctgcc ggtaaacctt gttcgtattt aacttttgca
    33061 taccagtcgg cgttagataa attctctgcc tcaccaatac gcccacgttg ggctcggtgc
    33121 caatcaacca aaatgttaat ttccagttca ggattatttc gcttcgcttg atataaagca
    33181 gctaatactt cctgcccggc ttcatctttt tcaaagtaaa gagcggttat ataaatacgc
    33241 ttttttgccg tttgaatcag ctgtaaaatt tgttgtttaa acgctttgct cgaggcgaga
    33301 aactgaacct gctctgccac ttgtggtaag tatggcaggc ttttcaatag gtattcagct
    33361 ttacgttgtt tgttcaaaat taacatcatt gattccaaaa ttttcaatcg ttgcctgcta
    33421 ttttacactg aaatcgccaa taaagcgatt ttcgcttaac ggcattgata gctggtcaaa
    33481 cgattaggat cttctccggt ttgataaatt gcgactttcg gataagcaca aagcgggatc
    33541 tgcttggctt tattagggta aagctcaccg gctttggcgg caatactttc cggctccagt
    33601 cctttctcaa cccaattttc aagggcagtg agcatatcaa aatcattcac cgttgcccct
    33661 cgcccacaat ggttcattgc cgacacgaaa aacaattttg caaaatgttg cggattttcg
    33721 accgcttgtt gtaggctttg ataccaattt ttgagatcaa ctgccgaaaa aatcgggtct
    33781 gaaacgcctt gataaatcag cattttgcca ccgttctgct taaaagcgga taaatcaact
    33841 tgatctgcat cgtgaatgct ccctaccgct ttcacttgtt cgctggcttg atccaaatct
    33901 acgctgagtg gatctcggct cggcactctg ggggctaaat agtaatgggt caaacttttc
    33961 aatcccattt taaaactaat gctgttgggc tgagcggttt ggctatcacc taatttccaa
    34021 tcccgccagc ctttagcgtt aatgccggaa tcatacgccc aagggctata aatcagctcg
    34081 cctcgactgt ttttcgcccc ctcgaaaatc gttttgatta gagcgacttt tttctgcccc
    34141 agttgctttg ccaccatttc cggctggaaa tcacactgtt cccacgcatt aattaaaccg
    34201 tctgctaagc cgtctaactt atcgcaacgt gttaatacac cattggcaat cacatctaaa
    34261 tcttgttgag tgagggcttg ggataaaatt ttgtcgccat caccattctt cggagcaact
    34321 gccaacaagg ctcgattatc ccatacttcc gccaagactg aacgggaaac ccgaaagccg
    34381 gggctgcctg caatcacacc gtcaaattcc tgtggataac gcattgccgc catcatcgcc
    34441 tcacgaccac cattcgagca gcccataatg taattgtgct tgctcggttt tcggtaaaat
    34501 tcggcaatca actgcttggc aaccgtggtc actttgccga tagaggcata ggcataattt
    34561 gagcgagctt cgggatctgc ggtaaacact aaatctcgag tggcgtgacc actgtcgtta
    34621 ctcactactg catagcctct gtttaagcca tttgcaccac tcgccccgtg cggatagagc
    34681 ttaccaatgg cagggaaaat caccccacct acaccgcccg ccccctgaaa taagaatttt
    34741 tcattccatt gttcgggtaa acgtagctca aattgaatac cgtaaggaac attatccacc
    34801 cccacccgtt ttccaatttc accttgtact aaacagtaag ccggcaactc agcagatttc
    34861 tcaacccatt cagctttata aatagccgtt ttttccggcg agttagattt taacgcgaca
    34921 cattgttcag ccatagaatt agccaaagca gtgtgagaaa aaacggagag aaaaataaaa
    34981 agaaaagcga ttattttcat catttacatc aatacaagcg gttatttttc cgaaaatttt
    35041 tgcaaatttt aaactgagtg tctatctatc gctggaaaag ctaaggcaga gtttcctctg
    35101 ccttagaaag atgaattgaa ttacatttta agcaaacaag cgtttttcgc cttcgccggc
    35161 tacgttttcc acacaacgtc cgcaaacttc ttcgtggcca gagtgcgagc cgatgtcggt
    35221 agcataatgc cagcaacgag ggcatttctc accatctgca ttttccactt ttactgcgag
    35281 tccggctaat tcgccttccg caatatctgc ttccgccagt ggtttaacaa tcgcttgtga
    35341 ggtaatcagc acaaagcgta attcattgcc aagttgttct aataacgggc gaatttcatc
    35401 attggcgaat accgtcacct tggcttctaa gccagcacca attactttgt ctttacgggc
    35461 ttgttccagc acacggttga cttccgcacg cacttttaag atttgttgcc agtaagcatc
    35521 atctaattta tcttgctcgg ttaagccgaa taatccggtg tagaattctt cggtaaagac
    35581 aaattcactt ctgccttcca cctgcggtaa gtagccccaa atttcatcgg ctgtgaagga
    35641 taaaatcggt gcaatccaac gtactaacgc ttctgcaata tgccataacg ctgtttggca
    35701 gctacggcgg gcaaggctgt cggctttggt ggtgtattgg cggtctttga taatatctaa
    35761 gtagaaagac cccatttcaa tcgagcagaa acgcattaaa cgctgtacta ccgtgtggaa
    35821 ttggtagtta tcataggctt ctttgatgtc gttttgagcc tctaaagcac aagccaccgc
    35881 ccagcggtct aaggcgatca tctcttgcgg ttgaactaaa tcactttttg gatcgaaacc
    35941 gttcaagttc gccaataaga aacgggctgt gttacgaata cggcggtatg attccccggc
    36001 actgtttaaa atattgtgcg aaacggtaat ctcaccggta tagtcggtgg aggcaaccca
    36061 taagcgtaaa atatctgcac cgtttttgtt ccacacttca cttggcacaa ttacgttgcc
    36121 aagcgatttg gacatttttc tgcctttctc atctacggta aaaccgtgag ttagcacttg
    36181 tttgtatggt gctttgccgt tagtagcagt ggaaagcatt aaagatgaca taaaccaacc
    36241 acgatgttgg tctgaacctt ctaaatacat atccgctaaa ttgccgttaa attcagggcg
    36301 ttgttctaca acagaggcat aggtcgatcc tgaatcaaac cacacgtcta aggtatccgg
    36361 cactttgcgg taatctttgg cttcttcacc gagcaattcc gcaggatcta aatcccacca
    36421 cgcttgaatg cctttttctt ctacacgttt cgccacttct tcaattaatt ctaaagtgcg
    36481 aggatgtaat tcttcggttt cattatgcac aaacatcgcc attggcacgc cccaagtacg
    36541 ttggcgtgaa atacaccagt ctgggcggtt tgccaccatc gtatcaatac gagcttcacc
    36601 ccagcttggg atccaacgca ccgatttgat ttctcctagt gcttgctggc gtaagccttg
    36661 ggtttccatt ccgataaacc attgtggggt agcacggaag ataatcgggg ttttgtgtct
    36721 ccaacagtgc ggataactat gcttgatgcg ggataatttt aataatgctc ccacttcttg
    36781 taatttttcg actactttat cgttggattc aaacacacct aagccggcaa agaacggggt
    36841 gtctgctttg aatttaccgt cattggaaat tagccctgcc atttcaatgt tatatttgcg
    36901 agcgaccacg aagtcgtccg caccgtgatc cggtgcagta tgcactaacc ctgtaccacc
    36961 gtctgtggta acgtggtcgc caaaaataaa tggcacgctg taatcataga atgggtggtt
    37021 aaagcgtaat aattctaagt tttcgccttt ggtggttgct aaaatctcag cagattcaac
    37081 gcctgctgct tttgcaacat cttcgactaa atcgaccgct agtaacacac gctcatcacc
    37141 taattggact aaggcatagt ctaattcagg gttgatcgca atcgcacggt tagacggaat
    37201 agtccaaggg gtagttgtcc aaataaccgc agataatgcc cctctacctt taccctgtgc
    37261 gttgaatttt tcttctaccg catttacgtc cacagcatta aaacgcacat aaatagaggg
    37321 agaaacttta tcttcatatt ccacttcagc ttccgctaac gaagatccac aatctaagca
    37381 ccaatgtacc ggttttgaac ctttgtataa atgcccgttc gcaatcactt tgccgagcgt
    37441 gcgaataata ttcgcctcag tgttaaaatt cattgttagg tatgggttat cccaatcacc
    37501 taaaataccc atacggataa aatcggcttt ctgaccttct acttgttctt tcgcatagtc
    37561 acggcacgct tggcgaaact cggcagccga aattttctca tttggtttac caacaatccc
    37621 ttctactttc agctcaatcg gcaaaccgtg acagtcccag cccggcacat aaggggtatc
    37681 gaaacctaat gcggttttcg atttcaaaat catatctttt aaaattttat tcactgcgtg
    37741 acctaagtga atattaccgt tagcatacgg aggaccatca tgcaaaataa aggttttctt
    37801 gcctttcgag gcagtacgaa ttttttggta taaatttttg tcataccaat tttttaacat
    37861 atcgggttca cgtttcgcga gatccccacg cataggaaag cctgtttcag gcaagtttaa
    37921 ggtgtttttg tagtcaatag tcattttttt atttctcgtt aaaattatct gttttatgcc
    37981 tagcacggca tagccgtact aggttaagca tagctcagcc cctctggggc tggaaactag
    38041 aaaggctcac cttgcaaatt ccttaaaaaa ttcaaccgct tgcaagcgat ctttctcaat
    38101 ctgggctttt agtgcttcaa agtcgggaaa ttttatttca ttgcgtaatt tttttaaaaa
    38161 gatcacttca atcgcctcac cgtaaataga ggcattgaaa tcaaaaatat gcacttctaa
    38221 taacggctta gtaccgttaa tggtcgggcg gttgccgaca ttggcgattc cgttaaaact
    38281 gccctgtttg gtcttcactt ttaccacaaa tacctcttga atcggcgtaa ccaaacgatt
    38341 gagcataata tttgcggtag gaaaaccaat ggttctgccg agtttattac cgtgtgcaac
    38401 gcgtcccaga atcgaataag gcttgccgag taatttctct gccaaatcta actcattgtt
    38461 ttgtaaggct tctcgcacta atgagctgct aattctttct tcgtttaagc tatgggtatg
    38521 gctttcttcc accgcaaagc gatattttaa gccggcattg cgtaaagttt caaaactgcc
    38581 cgcccgtttt gccccaaagc gaaaatcatc gcctacactt aaatagcgta ctttcagtct
    38641 tttagcgagc aaatcgctga tgaaatcgtc tgccgaaatt tgagcaaatt tttcactaaa
    38701 acgcacgcat agcacaaaat ccacaccggc ttcttccaaa tattttagct tatctcgcag
    38761 gcgcattaag cgggcgggcg ggttacaagc agttgaattt ccactttttt ttgcaaaaaa
    38821 ctctcgaggt tgtggctcaa ataacatcac aactgagggc aatcctaaat ctaaagctct
    38881 atcacaaaga cgagccaaaa tattttgatg cccaagatgc acaccatcga aattcccgat
    38941 agagagaaca cagccttgat ttaaagcgat gtgtttgtct aaattgtgga aacctcgaat
    39001 aagttgcata aaagataaac cattttataa gtgaaaattg ctgtgattat aacgagaaat
    39061 ctacaaaaaa ggaaaaaaat tcaatctgtt atattttttt agtgctgaaa gtggtcgtgt
    39121 agctaattat taaagcaaag atatgctata aaactgctat ttatacaata aaaatatatt
    39181 caaatgctac attttactat atgataatca tcaaaaaatc gagggaatca ttatgacaga
    39241 ttttgcttat cttcaacaaa agcgcaaaca gcttaaactc aaagtgaatg atatttgtga
    39301 acaagctggg gtaacccgag cttattttaa tcagttagta agcggaaaaa tcaaaaatcc
    39361 aagcgccaat aagcttaaag ccttgcattc cgttttagat atcgtagaag atagcaacca
    39421 gcgttccggg gttatttttg gcaaattcta tcctattcac acaggtcata ttaatatgat
    39481 ctatgaagca tttagtaaag tagatgtttt acatgttatt gtttgtaccg attctgaacg
    39541 ggatttacgt cttttccagg aaagtaaaat gaaacgaatg ccgacaaatg aagatcggct
    39601 acgctgggta cagcaaattt ttaaatacca acaaaaacag atctttattc accatttagt
    39661 tgaagacggt attccgagct atccaaatgg ctgggaagat tggtctggtc gtgttaaagc
    39721 gctatttgaa gaaaaaagca ttaatcctac tattgttttt agtagtgaaa ttcaagataa
    39781 agaaccttat gaaaaatatt tgcatctaga agttcaactt gtcgatccta ctcgtgaatc
    39841 ctttaatatt tcagcaacac aaattcgtaa taatcctttt caatactggc gctttattcc
    39901 gaaagaagtt cgtcctttct ttgttaaaac tattgcgatt ttaggtggtg aaagcagtgg
    39961 taaatcagtg ttggtgagca aattagcgaa tgtatttaac actacctctg cttgggaata
    40021 tgggcgcgag tttgtgtttg agcaacttgg cggcaatgaa caagcaatgc aatattccga
    40081 ctatccgcaa atggtacttg gacatcaacg ctacgttgat tatgccatga aacatgctca
    40141 taaagtggct attattgata ccgattacat cacaactcaa gcgttctgta ttcagtatga
    40201 agggaaggct cacccgtttc tggattcaat gatccgcgaa tatccttttg atgtgacgat
    40261 tttactttct aacaatacaa aatgggtagc cgatggttta cgcagtttag gatcgaaaaa
    40321 acagcgtcaa cagtttcaac acctactgaa aaaactacta gaaaaacacc atattcctta
    40381 tattaaaatt gaatctccaa gttatttgga tcgctacaat caagccaaag aggtggtaga
    40441 agctatttta aatgaagaac caatcccatt acagtttaag caatataata ttcacgaatt
    40501 tgaataactg ccacaggaaa taacatgata ctttttgcag gcgatccaca cggtagctac
    40561 gagcatcttt atccgattct acaacagcag acggaggagg tagctttagt tattctaggc
    40621 gatcttcaat tgactactcc tgatgaatta gatcggcttt cgcagtattg tgatatttgg
    40681 tttattcatg gtaaccatga cagtaaaacc gttgctgcct ttgattctat ttggaatagt
    40741 agctggaaag aacgcaatat tcacggtaaa gtagttgaca ttcaaggaat aaaaattgca
    40801 ggtattggag gggtcttccg aggtcatatt tggatgccgc ccaatcgtcc aatgtttttt
    40861 gatcccatcc atttttgcca atactctgct ccggaaaaaa tttggcgtgg tggtattcca
    40921 ttaaggcacc gctcttcgat cttcccttct gattttgaag cattggaaaa tgaaaaagcc
    40981 gatattttaa ttacacacga agcaccaaag ccacaccctc aaggcttctc tgtaatcaac
    41041 cagctagcaa gaaaattagg ggcgagcaaa attttccatg gccactacca tgataatttt
    41101 aattatggca atctaaatgt cagcagagaa tgtgctattt ataatatcgg ctttcgtagc
    41161 ctagcggata ttaatggaaa ttatctaatt ttaggtgttg atgatcgaga gaaatagcca
    41221 aaaatttgac tgaattaaac aaattgtcat tttacccttc ccattcataa atttataagt
    41281 aaaatgcgag aaatttgtaa cataaacgtt attaaacaga atttataaat taaatcagag
    41341 gtttaaaaga tgaagatccc acaaatctta attgttgagg atgagttagt aacaaggaat
    41401 atgctgaaaa gcatttttga aggagaagga tatcaggtat ttcaagcatc taacggcgag
    41461 gaaatgcact ctgttctgag tacaaatgaa atcaatcttg tgctaatgga cattaactta
    41521 ccgggaaaaa atggattaat tctcgcccga gaaattcgag agaatatgaa gctaccatta
    41581 atgtttttaa ccggtcgcga caatgaaatt gataagatcc tcggtttaga aataggtgcc
    41641 gatgactata tcactaaacc gtttaatcct cgagaattga ctatccgagc gagaaattta
    41701 ttgcaacgaa cgatgataga taaagaaaac gacgttgtaa aagagcaatc tgaaattgaa
    41761 agctatcgct ttaacggttg gatcttagac attaacagtc atagtttaat ctcaccagaa
    41821 ggtgaggtaa ataaattacc acgtagtgaa tttagggctt tattacattt ttgccaacat
    41881 cctggaaaaa ttcaaacacg tgaagattta ttgaaaaaaa tgaccgggcg ggaactaaaa
    41941 cctcatgata gaaccgttga tgttactatt cgccgtattc gtaaacattt tgaagaccac
    42001 cccaataccc cagaaattat tgtcaccatt cacggtgaag gctaccgttt ctgtggtaac
    42061 atcgaacctt aatcaagata ggagtaattt tatgaaaaaa ttaactattg tcgcattaac
    42121 ttgcttattt tctacccatc tattagccgc tcctgtcgga aatacattta ctggcatcgg
    42181 tgtcggtgta gatgtaacta caacaaaata caaagttgaa ggagtaaaag gcaaggattc
    42241 cacaggtccg gcattagttg tcgattatgg tattgagcaa ggcaataact ttgtaggcgt
    42301 tgtacaagga aaagcaaaag taggtagtac aaaagtattt agcgatgtaa aacaaaaaaa
    42361 taaatatact atagcttatc aacaaggtta tcgtgttgga tccgatttat taccttatgt
    42421 aaaagtagat gccagctcaa gcaaaatcgg taatgaaacc tatcgtggct ttggtttcgg
    42481 tgctggtgca aaatatgcag tttcaagcga tgttgaatta ggtgcagaat acactcgcga
    42541 taatttaaaa cgtagcggca caaaattaaa aggtaacgct ttcaccgcga atgcaactta
    42601 tcgtttctaa tcttagcggt aaagttttct gaaaaaataa ccgcttgtaa cacaaaagag
    42661 cctgaagtga ttcaggctct ttgcctttta atataatact cgggctcgaa tcgtgccttc
    42721 gatcgctttt aaacgttgta atgcttcatc aacattgtcg ctctctacat caattacaac
    42781 ataaccgata gctgcatcgg tttgtaaata ttgagcggca atattcacat ttgattccac
    42841 aaaaatctgg ttaatttgat ttaacatacc tgggcgattc tcgtgaatat gtaataaacg
    42901 tttggtatta gtatgaagcg gtaaggatac ttcagggaaa ttcactgccg tcacggttga
    42961 accgttatct gaatatttca caaatttatt ggcaacttcg gtgccgatat ttgcctgagc
    43021 ttcagaggtt gaaccaccaa tatgtggcgt taaaatcacg ttatcaaact tgcacaatgg
    43081 tgacacgaac gggtcattaa ttgatgccgg ttcttccgga aatacgtcaa tcgccgcacc
    43141 acgcaatgag ccgtcttcaa tccgagcggc taatgcgtct aaatcgacca ctgtaccacg
    43201 agcggcatta attaacaccg agccttcttt taattgagca atgcgttctg cactcattag
    43261 gtttttagtc gagtcgattt ccggaacgtg tagtgaaatc atatcgcagg ttgaaagcaa
    43321 atgctctaat gtcggcactt gctgtgcatt accgagtggt agtttgtttt caacatcata
    43381 gaaataaacc tgcataccaa tggcttcggc aagaatacta agctgtgaac cgatatgacc
    43441 atatcccaca atacctaatt tcttgccacg tacttcgttt gcacctgctg ccgatttatt
    43501 ccacacccca cgatgcactt ccgcatttgc agtcgggact ttacgcatta ataaaatcat
    43561 ctctgccagc actaattctg ccaccgagcg ggtatttgag aacggtgcat tgaataccgg
    43621 aatacctcgt cttttcgccg cattcaaatc aacttggttt gtaccgatac agaaacaacc
    43681 aatcgcaatt aatttcggag cttgagccag tacttcttcg gttaaaaaag tacgcgagcg
    43741 aataccaaca aagtgtgcat ctttaattgc atcaattaat tcttgaccgt ctaatgcttt
    43801 tttatgcact tcaatattgg tataaccagc cgctaagagt acatcaattg cgttttgatg
    43861 tacgccctca agcagaagga atttgatctt ggatttatcc aaagaaattt tagccatttt
    43921 ttgctcctaa gtatttgtat ttgcaataat aaattattct aaaataactg caccttcagg
    43981 tgtgccgaca atggttacat tggcaaaacg ttgtgcaaaa ataccgttag tcaccacgcc
    44041 tgcaatatta ttaatggtat gttccatttt caacggctcc ataattttaa agttatgtac
    44101 atctaaaatc acattgccgt tatcagtgac cacgccctca cggtattccg gcgaaccacc
    44161 taaggctacg agctgacgag ccacataaga acgagccatt gggatcacct ccaccggcag
    44221 agggaaagtt gaacccagca catcaacttg tttggattta tccacaatgc agataaattt
    44281 tttcgctaat gaactcacga ttttctcacg ggtaagtgct gccccgccac ctttaatcat
    44341 cgccccttgt ggcgtgattt catcagctcc gtcaatatac acatctaatt ccgtcacttc
    44401 attggcactg aatacttcaa tgccgatatc acgcaaacgc tgttccgagg ctttagaggc
    44461 agcaaccgct cctttaatct catctttcat tgaagcaagg gcatcaataa aacagtttac
    44521 ggttgaacca cttcccaccc caacaatagt gtccgatttt acaaatttta atgcagcttg
    44581 tgccgcaatt tttttcattt cttgttgatc catttttacc tccacttgta gggcaaatca
    44641 tcatttgccc acttcggcaa ggcgaaaaaa attttcgccc tactacatct attctacaca
    44701 tatatgtaac aagcggtcat atttggcaaa ttttttacca aaaacgaccg cttgtcatta
    44761 gttacgtttt actgcttcaa caatctcttc cgcacagctt tgagcaagta cagcatcttc
    44821 gcactccacc atcactcgaa ttaatggctc agtgcctgat ttacgcaata aaatacgccc
    44881 tttgcctgcc aagcgttttt ccacatctgc cgctaccgct ttcacttcgt tactttcaag
    44941 cggatttgcc gcccctttct caaagcgaac atttagcaga acttgcggga acagaggcac
    45001 tgcttttgcc aaatcattca ggcttaattt gtggcttgcc attgctgcta atacttgcag
    45061 tgaggcaata ataccatcac cggtggtgtt tttatctaac acgataatat gcccggagtt
    45121 ttcgccaccc agtttccagc ctttttcttt aagctgctct agtacatagc ggtcacccac
    45181 gttagcacga gagaatggaa tggctagctc ttttaaagct aattccaagc tcatattact
    45241 cattaatgta ccgactacac cgccttgtaa tttgcctgaa cgtagagctt ctcgggctaa
    45301 aataaataga atttggtcgc catcaacttt attgcctaag tgatcgacca taatcaaacg
    45361 gtcgccatca ccatcgtaag ctagaccaac atccgcacct gcttctacca ccactttttg
    45421 aagtgcttta atatccgttg caccacattt ttcgttgatg tttaaaccgt ccggcttagt
    45481 accgatttca agcacttctg cccctagctc acgcattaca ttcggcgcga tatggtaggt
    45541 tgcaccgttg gcacaatcca ccacaatttt atagccttca aggcttagtt cagacgggaa
    45601 agtgccttta caaaactcga tataacgtcc tgcggcatca ttaatacgac tggcacgacc
    45661 taaatttgct gaatctacgc aatccatagg cttatcaagc attgcttcaa tcgcttcttc
    45721 aatttcatca ggtagttttt caccaaccga cgagaagaat ttaatgccgt tatcgtaata
    45781 aggattgtga gaggcagaaa tcacaatgcc ggcttccgca cggaaagtac gggttaaata
    45841 agcaattgcc ggagtcggca tcggaccaac gaatactgct gataaaccgg ctgcggttaa
    45901 accggcttcc agagccgatt ccaacatata accggaaata cgggtatctt taccgattaa
    45961 tacttttttc gtgccttggg ttgccaacac tttacctgct gcccaaccga gttttaatgc
    46021 aaattcaggt gtaattggaa atttacctac ttcacctcgc acaccgtctg tgccgaaata
    46081 tttacgagcc attctaattc ctaagattga taaaaattta ctttaaaaaa tattgatatg
    46141 ccggactttc gctcacattt tggaagcggt aacctagctg ttctaaatgt cggtttaatt
    46201 ctacttcatc gcctctgttt aatgcaaatg cggcaagaat atcgccataa tcggctccgt
    46261 gagctcggta atggaataac gagatatccc agttagtcag catttgtaag aattttagca
    46321 atgccccttt ctgctctgga aattcaaagc tatagagttg ctcatattga atggagcttg
    46381 ctctaccgcc taccatataa cgaatatggg ttttggcaat atcatcgtcc gataaatctg
    46441 ccacatcata gccgttttgt tgcagatctt taataatctc tactttttct gccgagcctg
    46501 aaattcgcac ccccacaaaa atacaggctt gtttatcatc ggaatggcga tagttaaatt
    46561 ccgttaccgc acggttgcct aaaatctcgc agaattttaa gaaactacct ttctgttcag
    46621 caatggtgac tgccaataaa gcttcacgtt tctccccgat ttcacaacgc tctgacacaa
    46681 aacgtaaggt gtggaaattc acattcgccc cggaaagaat gcaagctaag tttttatctt
    46741 gtaattgatg ctctttcaca tattttttca aaccggcaag ggaagttgcc ccggacggct
    46801 cggaaatcgc acgcacattt tcaaaaatca acttcattga ggcacagatt tcatcattat
    46861 ccaccaacac cacatcatca acatattgct gacacaggcg gaaagtttca tcgccaatgc
    46921 gttttaccgc aataccgtca gcaaaaagcc caacccgttc taaatcggtc ggttgccctt
    46981 gctttaaggc gtgatataag caagcagaat ctttagattc gaccccaatc actttaatat
    47041 tcggcatcac ctgcttaatt aaaaccgcaa tgccggcaat taagccgcca ccgcccactg
    47101 gaataaatac ataatctaaa tccggctttt gttgcaccag ttctaagccg attgtgcctt
    47161 gccctgcaat cactgccggg ctgtcaaacg ggtgaatgaa ggtcataccc aattcggtgg
    47221 aaagctcaat cgctttcgcc ttagcttcat caaaattcgc cccataaagc aacacttcac
    47281 caccatagcc acgtaccgca tcaaccttaa ttgccggtgt gttttgcggc attacaatca
    47341 aggctcttaa acctaaatgt ttggcagaaa gtgccacccc ttgtgcgtgg ttgcctgctg
    47401 aagccgcaat gactccagcc tctttttgtg ctttggataa atttgagatc atcgcaaaag
    47461 cacctcgcaa tttaaagctg tgaaccggct gtcggtcttc acgtttgata aaaatagagt
    47521 tgcctaaccg ctcagacagt ttttccattt tctgtaaagg ggtcacttgc gctaagtcat
    47581 aaatatttga gcttaaaatc gagcgtaaat agtcgatagc ggattgggaa tgttgtgttt
    47641 cgttcatcat tttgaaaggt tatttattgt tagattgaga taaagacatt ggtaaatttc
    47701 caaggaaaat tgaccgcttg tttggttatt tagcaatggc tttaacaggg aatatttcct
    47761 ctcgcccgtt tgcgggagag agacagctta aaatttcgtt cagaaatttt aagcagagag
    47821 aggggaaacc ttggatatcc ccctctccct ccgcaaatct tcgatttgct ccaccctctc
    47881 ccgcaagcgg ggagagggga aatcacaaag ttagtgatga ccaccgcaac cacagccacc
    47941 gtgtccgtga tgatggtgat gatcgtggtc gtgaccgccg cagcaaccat cgtgatcgtg
    48001 atgatgatcg tgcccaccac aaccgcaacc gtgttcgtgt ccgccgtgaa cgtgtccgtg
    48061 tgcgatttct tccgctgtcg cttcacgaat gccaaccact tccacagaga aaagtaattc
    48121 ctgaccggct aacatatggt taccgtccac cacaacttca tcgccatcta cttcggtaat
    48181 taccaccggt agcggaccta aatccgtgtc cgcaataaaa cgcataccca cttctaattc
    48241 atcgacgccc ataaatacat ctttcggtac acgttgaacc atattatcgt tgtactcgcc
    48301 gtaaccttct tccggtttca cacgcacttc aaacacatcg cctacagctt tgccttcaag
    48361 ggctttttct aagccttcta ccaagttgtt gtgaccgtgt aaatattcta acggttggtt
    48421 taccggtgct tcatctacta atacgccttc ttgagtacgc acttgatatg caatgcttgg
    48481 cactaaatct tttgtaatgt tcatattgaa tcctttaatt catcggtttt ataaaatagc
    48541 aagccattgt aacgctttat tttatatttg caatctatct ggaaatttta accgcttgtc
    48601 agtaaattag tcgataatat caggggttac ggtgtctacc acatcaactg cggttcccac
    48661 cactccacca accaccgaag ttaccaaaca accacttagg aaaatagttg ctgaaatcag
    48721 cccacatact ttgattaatt ttttcatttt aaaatccttt caaaaacaaa aaacagccct
    48781 aatcaagact agagctgcat catatttatt cgcttaaatt atttttcttc agcgataaag
    48841 cgataaacta ccgcaccgat aattgcaccg acaatcggag caacccagaa caaccataat
    48901 tgctcaatcg cccagctgcc ttggaataac gctacaccgg ttgaacgtgc cgggtttact
    48961 gaggtattgg ttaccggaat gctgattaag tggattaagg ttaaagccaa accaatagca
    49021 atcggagcga aacctgctgg agcacgttta tcggttgcac ccataatgat gattaagaag
    49081 aatgccgtta ataccacttc aattaataat gctgctgtta agctatagcc gtgtggcgaa
    49141 tgctcaccat aaccgttgcc ggcaaagcct gctgtagcat caaaagtcgg aacacctgaa
    49201 gcaatggtgt ataacactgc accggcagca atcgcaccga ttacttgggc aatgatataa
    49261 ggcactaaat ctttagcgtt aaaacgaccg ccgactaata aaccgattga aaccgccggt
    49321 ttgaagtgac cacctgaaac atgaccgact gcatacgcca ttgttaatac ggttaaaccg
    49381 aaggctaacg aaacgcctgc ataaccgatt cctaattcag gaatgcctgc tgctaaaact
    49441 gcactgccgc aaccaccaaa cactaaccaa aatgtcccga aaaactcagc aaaatatttt
    49501 ttcatttttt atcttttatc cttaccctaa agggtgaatc acacataagt gtattaactt
    49561 tccgaatgct ataaaacata gccaataaaa tatgagtata ctaaaaaaag taaagacgca
    49621 tatttcttaa ttgatagtat agaccgattt tttcctccaa ttaaagtaaa aatacaactc
    49681 tatacaaatc tatacatttc tattcaaatt ccacacttcc tgaagcggta gctgaaattg
    49741 tggttttacc tgcttctaac gggatttcat ccatagattt gctttgtgcc attgatgaaa
    49801 ctgcatacat tgctctgtgt tcataatatg gtctaccacc atcatttgga gtttgaatat
    49861 tgatattaac tagcttatat gttttcgccc ctaaggcttt ttgaatcaca tcggctttat
    49921 gctgaaattt gctgataatt tccagcgtca tttcatcttc aagggacgcc attttctctg
    49981 gcgatacact aaaatcaatg taacgaatcg ccacatcttt acctaaattt tccaacaccg
    50041 ctgccattgc atcaaaatct ttgcttttca actgaatgct accagaggta tcccaaccat
    50101 caatattccc tttgttgtta taattaacgt gattagtcac accttcagct tgtacttcaa
    50161 tcgatggatg tttttttgcc tcagccaata cacgattcag gttttcagat acaaattttt
    50221 tcagctccgg caaggattta cctgattttt ggctatacac acttgcctgc atcacgtcct
    50281 tttccaccgt gcgagagact tcggttgaga aattaaaaga agccggttta tctttatgtt
    50341 ccacggtatg agtttccgct gaagttaccg ctgttgcgac tgcaagcggt agaatggtaa
    50401 gaaaattttt caatttcata atcagtcctt aaaagggtta aaaatcattt cttagatctc
    50461 acttgcgtag gaaagttcat tcaatcgaaa gcacaatcgc ctgtgtatca ttttcaattt
    50521 gccagcgaat attgtagccg gcaaggttca taccataaac tcgctcacta ggtttccctt
    50581 gttgatacgc cgggcgaggg tcttgggcga tgacatcggc aagaaaacta agcggctgtt
    50641 cgatgccaaa ttttgcaaaa tttcggcaaa attcgacagc ttgttttgcc tcctcgctaa
    50701 aacgcaccgc taatcttgct tgtggttttt gctgagcaaa accggaaacc gcttgcggct
    50761 cgctatctgc aaatgcaatg taaggcttga tgtcaaaaat tggtgtgccg ttaactaaat
    50821 ccacgctgcc taatttcaaa taaacttcac tcccccccgc cactaccgct tctaacttca
    50881 ctttcgataa gccaagcgga ttcggacgat gggtggcacg gctggcaaag accccgaccc
    50941 gttcgttccc gcccaagcga ggcggtctga cggtggcgtg ccactctctt tcgggaatgt
    51001 gatggaattg gaaaatcaac caaatatgac taaatttctc caagcctctg actgcatcgg
    51061 gggtattgta aggcggaatt aaacgtagaa tgcctttccc ctccgctacc aaattcggct
    51121 gacgaggcac ggaaaatttt tcatcatagg ggctttccac aaaaccgata gggtttaatt
    51181 gaatcggggt tagttgattt gaggtagagt tcattacgct tttttctgtt aaaataatat
    51241 aaaatattgg acataatgat atgaaattga ggatggtgca agcgtccacg cttgtaccaa
    51301 ttcgttttac catttaacac aagagtggac gcttgcacta tcgcttaaat ccttaacatc
    51361 attgtaaatg aaattacgct aagattattc tctatgaaca aaaattctct cttttcgatt
    51421 tggtttacca ccgctcgccc gaaaacttta ccgctggcgt tagcttcaat tattgtgggt
    51481 tcagcacttg ctcattgggc agggaaattt gatgttgtta ccaccttact cgcatttatc
    51541 accaccattt tgttgcagat cctgtctaac ttcgccaatg attacggcga ccacgtcaaa
    51601 ggctctgaca ccaaagaacg aatcggaccg ctacgggcga ttcaacacgg cgttattagc
    51661 ggtgaacaac ttaagaaagc cgtgattatc ttaagcctac tctcgtttgt ttccggtgtt
    51721 gccttaagtg cctatgcttt tgaaacagtg caggatctgt ttttctttat cgggcttggc
    51781 atcgtctcaa ttattgccgc cattacttac accgtcggca aaaaagccta cggctatttg
    51841 gggctgggcg atctatttgt gctgattttc tttggctttg tagcggtaat cggcgtgttc
    51901 tacttgcagg ctcatagcct acctataatg attctgctcc ctgctttcgg ttgcggattg
    51961 ctgtctgtag cagtgttaaa tatcaataac ttgcgtgata ttaaccaaga ccgacaagct
    52021 gggaaaaaca ctctcattgt acgaatcggt agccaaaacg ggcgaaaata ccacgttgca
    52081 ttgttagtgc tagcggtcat ttcttatctg atttttgcaa tttctgaatt tgaacattgg
    52141 tatagcttca tttttttgct gtctgtaccg ttactggcaa aacacgctcg ttttgtctat
    52201 cagcataaag acccaaaaga actctaccca attctagggc aaatggcagg gctggcgttg
    52261 ctcactaatc tattatttag tttgggcatt gtgttagggt aagttgcaaa attttaacaa
    52321 aactaaaccg cttgtaataa aggattacaa gcggttgttt tttatctaaa tttacaatta
    52381 gttatctagt tcttcaaaga atccatcttt ttcgccacgt tgatactccg aattgagcaa
    52441 cttattaata atgtaccaat ccgcttcaac ctctatatcg ccttctgcat aagcacctaa
    52501 ttcgtatggc ggataaacaa aagcaatgcc gtgaggggta aagtagaatt ggtcagaaat
    52561 acggaactct tttttatcag caaatccatt atagttgcca ttttcatcca cacgcacgct
    52621 actgtaattt tcccaaagaa tgtctttcag ttgaacttga ttttttgggc tgattaaatc
    52681 atttaagcca atgattgctt ttttagctaa atctacattg atatattgcg tatagtgcat
    52741 accgtgagcc ccacccatat aggtgtaatg catcatagtg aatgtagcaa tattattgcg
    52801 ttgcccgata aaagcactgg aaatatgatc atcatagcca atagctggct cggttttcac
    52861 actttctacc aacccttgat aaaccgcttc acgatgcttt ttaaactctt cttcggttgg
    52921 atttttcagc tttctgcctt gttcttcatt gtaatcatag gcctgattaa tcaaaagctg
    52981 gttaagccaa tcaaaattgg tttttggtag agacacaaac gcacttactg tactttcttc
    53041 tattgcaaat tcttgtttcg gatcaacttg gtgcttaatc acctctttct tatcaaagat
    53101 tttcacaatt tcaacattta acgctgtgtt ttgctgagcg ttctctaact ctgattttaa
    53161 tttttcattt tctgctttca cccctgaaag ttctgcaact tcagcctctt tttttgctaa
    53221 atcagcctga gcatttttta attctgtgcc taactgaaca atttgttttt cggcttctaa
    53281 taccgtttgg gtcattttgc cgtcttcaca agctgaaatc agaaatactg agccaattaa
    53341 aagtgctaat agtgattttt tcatctctcc ctcttttgta aaaaatacgg taaatatcac
    53401 cgcttgttat acagattaaa acaaaatccc ctataccatc aggcataggg gaaatgatta
    53461 gtcgtctaag aaactgcgta aggtttccga acggctcggg tggcgaagtt tgcgcagtgc
    53521 tttcgcttca atttgacgga tacgttcacg agttacgtca aattgtttac caacttcttc
    53581 gagtgtgtgg tctgtattca tatcaatacc aaaacgcata cgcaacactt tcgcttcacg
    53641 cggggttaag ccctctaaca cttcgttcgt tgccatacgc aggctctccg cagtggcgga
    53701 atccaatggt aattcaaggc tttcgtcttg aatgaaatca cctaaatgtg aatcgtcatc
    53761 gtcaccgatt ggtgtttcca ttgaaatcgg ctctttggca attttcaata ctttgcggat
    53821 tttatcttcc ggcattccca tacgttctgc cagttcttcc ggcgttgcct cacgccccat
    53881 ttcttgtaaa cattggcgtg aaatacggtt gagtttgttg atagtttcaa tcatatgcac
    53941 cggaatacga attgtacggg cttggtcagc aatcgaacgg gtaatcgctt gacgaatcca
    54001 ccaagttgca taagtcgaga atttataacc acggcggtat tcaaatttat ccaccgcttt
    54061 cattaaaccg atgtttcctt cttggattaa atctaagaac tgcaagccac ggttagtgta
    54121 ttttttcgca atcgaaatca ccaaacgtaa gttagcttcc accatctctt ttttcgcacg
    54181 gcgggctttt aactcaccat tggaaatacg cccgccaatt tcacgaattt gagcaatggt
    54241 taagcctgat gtttgctcta aattctgtaa gttagcaata ttgacacgga tattatccac
    54301 ataattagct aatttcggta ctgcattttt cttggcatta atcgcttttt caatccacgc
    54361 ttcgcttaat tcgtgccctt ggaatgcttt caagaaatcc gcttttttca tgccggcata
    54421 ttccactgca tagcgttgaa tttgacgttc ttcagtgcga acctgcttca tcagtttttg
    54481 catagaagca accaataagt caaattgctt cgacaccaaa cggaactcac ggaaaatatg
    54541 agataaaatt tcaatttgct ctttcgattt tttactggtt cgtccgtgtt tttgaatgac
    54601 caataacact ttttcatgtt ggctgcgtag ggcttcaaat ttttcacggg caagttccgg
    54661 gtcaattgag ctgtcatcac tgctgtctga gctgctatca ccgtcttcat cttcgttttc
    54721 gtcatctaca tcaggcacat cagaagattc ttcatcttca cctaaagcag cctcaatatc
    54781 ctctaacggt gcttcttcta aaatattagg atcgacaaat gctgtcacta aatcagaaag
    54841 gcgcatttca ccggtttcaa cttgagcata gcacgctaac aggccactta aggcttccgg
    54901 atattccgca atcgcacatt gaacttcgtt aatcccttct tcaatgcgtt tagcgatatc
    54961 aatctcacct tcacgggtta aaagctcaac tgtccccatc tcacgcatat acatacgcac
    55021 agggtcagta gttctaccta actctgattc tacggttgaa agcactttgg tggcttcttc
    55081 taccacatct tcatcggcga tattttcagc gagtagtaaa tcatccgtat caggggcagc
    55141 ctctaaaact tggataccca tatcgttgat catctgaata atatcttcga tctgctccgc
    55201 atccaccaac tcttccggta agtggtcgtg cacttcagaa agcgttaaat atccctgttc
    55261 acgcccttga ctgatcagaa gttctaattg agattgctgt tctaattgtt gatctgcttg
    55321 gttttccata gtctatccgt ttattatgcg agcaaaaata gtagtggatt ataccactaa
    55381 atttggttcg acttcataaa ttcacaaaaa aattctattt ttctaattta cacattactt
    55441 tgatgcttat gagaacagag aggtgtagca agagagataa ataactttct ttttagatag
    55501 aattaattat tttcttcgtt catcacttct gccaaatctc ccctagcccc tctttgctaa
    55561 agaggggaat tattcgagct taaaattcta ttgaaacatc aaaagagcat actctttttt
    55621 ctcatcatcg gttaagccca cagttcggtc tttggcaatt agctcttctt tgcgtaattc
    55681 cactaatttg gcgtagagaa aatcgagagt gtctataaat gttcgttcga tattttcggg
    55741 taactctaaa tgatcccaat ttgcgagggc ttcaacaatc ttatattggg gatcttcccg
    55801 ataatgttca agtagcccgc ccatactgat acctgcattt tgctgacaag ttgcgacaat
    55861 atcggttaat aatgtaaagc caggatcttt caaggaggct aaagcactta catcgggtac
    55921 gaatttcacc aaatacggat tttgaatcaa taacgcaatc aacagccgca ttggcgtacg
    55981 tttcattttg accgcttgat gtaaaggctt ctctgccgct tttttcgtcg gtaacagagc
    56041 ttctatctgc gttgggtcta aaatgcctaa tttctgtcct aaaatattgc gtaaatacac
    56101 tcgcagcatc tcgcccggaa tacgattaat taacggcaca gctaaagcag cgagcttgga
    56161 ttttccctct tttgaagaga gatccacatc cgccagcaaa ctgtcaaata agaaatcgtt
    56221 taatggcttg gcattctgtg ccacatattg ctcaaatcct tctttacctt gagaacgaac
    56281 aaaggtgtct ggatcttcgc catcgggcaa gaaaataaat ttcagttggc gaccgtcttg
    56341 caaataaggc aacgcatttt ctaatgcacg ccatgcagca tctcggccgg ctctatcgcc
    56401 atcataacaa cagacaattt gctcggtgca acgaaacatt tgctgaattt gttcaccagt
    56461 ggttgccgtg cctaaagaag caactgcgtt atccacccca aattgagcaa gggcaaccac
    56521 gtccatatat ccttccacca cgaatagata atccggcgtt tcattgactt tcagtgcttg
    56581 atacaagcca tataactcgc tacctttatg ataaatcacc gtttcgggcg agttcatata
    56641 tttcgctcct tgctcatcat tcggcagcac tcgcccacca aaggcaatca ctcgtccacg
    56701 cttatcccga atcgggaaca ttacccgatt gcgaaattta tcgtaaattc gaccgctatc
    56761 atttttggtt aaaacgcccg tatcgagcaa tttctgaata tcttcctgcg attgcccaaa
    56821 agtacggagg gctgcatcaa aggcattcgg agcaaaaccg atttcaaagc gttcgataat
    56881 ctcaggcgac aaacctcttt gctgtaaata gctttgtggc tcaatttggt gcgataaatt
    56941 ctgctgatag aacttcgcca ccgcctccat caattcataa agattacgct tggttttaaa
    57001 attggcttga ggcttgccgt cgcgttgaat aacattctct ctcggcactt ccagcccgtg
    57061 catagctgcc agttcttcaa tcgcttccgg aaattcgagt ttgtcataat ccatcaaaaa
    57121 ggtgatgaca ttgccgtgta cgccacagcc gaaacaatgg taaaactgtt ttgattggct
    57181 taccgaaaag gaagggcttt tctcgtgatg aaaaggacag caggcttgat aatctcgccc
    57241 agcctttttg agtttgaccc gactgttgat gacctcaaca atatcggtgc gagcgataag
    57301 atcatcaata aatgaacgtg gaattgtgcc tttcattgat ttcctcctgc tctttgaatg
    57361 atacaagcgg agcaattttg caaatttttt gcaaaaaaca accgcttgaa atagaaacgt
    57421 taaaaacacc aaaaccgtga gcctaacgga atcacggttt cgatatagtt tgctaaccag
    57481 cctaactaat tagtataaac gtgtgttacg tgcgttctca cggaaattac gtttagcgtg
    57541 acgtttagca agtgatgctt tttcacgttt acgaattgta gttggttttt cgtagaattc
    57601 acgagcacga acttcagcta agatacccgc tttttcgcaa gagcgtttga aacgacgtaa
    57661 tgctacgtca aatgattcat tttcacgaac tttaattact ggcatatgcc atcacctcag
    57721 aaaaatatga ttaaattaaa ccgcacacaa ttttggcggc atagaacaaa aaaggtagtg
    57781 cattctacct taagcactca cataagtaaa gtagtattgt ggcataaaac cgccgtatta
    57841 tgttgcattt ttctacagtt cgaataattt ctcggtcgaa aaacttaatg ccggaaagac
    57901 caccgaagtt gccggttcat cttctgccac cggctgaata ccgatatatt taccgttttc
    57961 caacacaaaa atctgaatag tgcgggtttc gggagaaaca atccaatact ctttcacccc
    58021 ttgttcctgg taaagctcgt atttatcttt catctccctt ttggtattac ccggagaaag
    58081 gatttccacc actaaatccg gtgcccctac acagcctctt tcatctaact tactgacatc
    58141 acaaattaca caaagatcag gctgcactac agttttgact tttccgtttt catcgggaaa
    58201 ccgaacgtca aaaggcgcag aataaatctg gcattggtga ttgtcaaaaa cctctaaaaa
    58261 ttttgctgtc atcttcatag aaattcgctg atgaaaacga gtaggagccg gagacatcgc
    58321 cacaattttc cctttgataa tctcaacccg ctctttaaat ttccatagca aataatcagc
    58381 gtaactgtaa cttttttgta agtccagttg atttaagctg gtaatttcgt tcattggtaa
    58441 taagctcata ccgcctcctt tttcagaaac ataaggatat tatgcagaat aatccctcaa
    58501 attcaacaaa actttgctaa aatgatagat actagctata gccttagtat aaaatggcaa
    58561 gaattttcca ttctttagga cttagtttaa tgcttcatca tctgaaaaaa atagaaaagc
    58621 cacaaataac gctttttgta aatatcttag ttgctgcatt ttttgtaaca gtgctgacct
    58681 ttaaaaaagg atatagttat gtgccgatga ctttaggcgt tattgcaaca tttagtttct
    58741 tatattacag atcta
//
LOCUS       DANLUT010000003        56250 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLUT010000003 DANLUT010000000
VERSION     DANLUT010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 56250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 56250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..56250
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            141..359
                     /locus_tag="PXB38_000118"
     CDS             141..359
                     /locus_tag="PXB38_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5352490.1"
                     /translation="MTESNKQQDMHRADIVASVRKAGTTLARLSVEAGLHPRTLNNAL
                     ERKYPKGEQIIANAIGKTPQEIWPSRYS"
     gene            370..2340
                     /locus_tag="PXB38_000119"
     CDS             370..2340
                     /locus_tag="PXB38_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5352491.1"
                     /translation="MNEWFSANDLAGLKGMPSSPQGVNKKARLEQWQKQQQNGKQGKA
                     YEYHLHSLPPETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQMASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIEVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2520..3008)
                     /locus_tag="PXB38_000120"
     CDS             complement(2520..3008)
                     /locus_tag="PXB38_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352492.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            3040..3981
                     /locus_tag="PXB38_000121"
     CDS             3040..3981
                     /locus_tag="PXB38_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5352493.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3984..4298
                     /locus_tag="PXB38_000122"
     CDS             3984..4298
                     /locus_tag="PXB38_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352494.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4310..4546
                     /locus_tag="PXB38_000123"
     CDS             4310..4546
                     /locus_tag="PXB38_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352495.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4530..4823
                     /locus_tag="PXB38_000124"
     CDS             4530..4823
                     /locus_tag="PXB38_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352496.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4816..5337
                     /locus_tag="PXB38_000125"
     CDS             4816..5337
                     /locus_tag="PXB38_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HDL5352497.1"
                     /translation="MTKKTTRVKSATQSAIYQSRDEVQVAIKIIGDKQRELQRLATAM
                     NDELAAISASYAQHIDALKEDIKPMQKGVQMWCEVHRNELTDNGKCKTGSFVTGEVQW
                     RVKPPSVSVRNAESVIELLENFGLHQFIRTKQEVNKEAVLADPQAVSAIEGINIKSGE
                     EEFIIKPFEQEVK"
     gene            5520..5717
                     /locus_tag="PXB38_000126"
     CDS             5520..5717
                     /locus_tag="PXB38_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5352498.1"
                     /translation="MKPTEAKFNRYQHYAEKAAEAERKGNYKEAQDHWEVAKLSAKKT
                     ANRDWAEQRAEFCKRMHNKPF"
     gene            5727..5909
                     /locus_tag="PXB38_000127"
     CDS             5727..5909
                     /locus_tag="PXB38_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352499.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5926..6315
                     /locus_tag="PXB38_000128"
     CDS             5926..6315
                     /locus_tag="PXB38_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352500.1"
                     /translation="MAITEEQWKEIKQKLDSIIGRVKFRYKEHLLTVDVVQIKRSLKL
                     AVYVDGEIDGAWTKEGHEIRPYLEEVWYRKERPFFNAKEKKEYRGLMSKKKLNEKIVT
                     YSPMFPSPTALTRQYKKLDGLELIEVI"
     gene            6364..6651
                     /locus_tag="PXB38_000129"
     CDS             6364..6651
                     /locus_tag="PXB38_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352501.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6770..7315
                     /locus_tag="PXB38_000130"
     CDS             6770..7315
                     /locus_tag="PXB38_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL5352502.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            7302..7844
                     /locus_tag="PXB38_000131"
     CDS             7302..7844
                     /locus_tag="PXB38_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352503.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTESETMKAEQAELEKTRNAIAYVQRFVDLG
                     REEVVKNSPEYQIWLAHKPK"
     gene            8009..8368
                     /locus_tag="PXB38_000132"
     CDS             8009..8368
                     /locus_tag="PXB38_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5352504.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            8504..9013
                     /locus_tag="PXB38_000133"
     CDS             8504..9013
                     /locus_tag="PXB38_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5352505.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            9016..9285
                     /locus_tag="PXB38_000134"
     CDS             9016..9285
                     /locus_tag="PXB38_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5352506.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            9279..9626
                     /locus_tag="PXB38_000135"
     CDS             9279..9626
                     /locus_tag="PXB38_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5352507.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYAYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            9653..9805
                     /locus_tag="PXB38_000136"
     CDS             9653..9805
                     /locus_tag="PXB38_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352508.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9805..10140
                     /locus_tag="PXB38_000137"
     CDS             9805..10140
                     /locus_tag="PXB38_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL5352509.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            10142..10438
                     /locus_tag="PXB38_000138"
     CDS             10142..10438
                     /locus_tag="PXB38_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352510.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            10461..11033
                     /locus_tag="PXB38_000139"
     CDS             10461..11033
                     /locus_tag="PXB38_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL5352511.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            11033..12589
                     /locus_tag="PXB38_000140"
     CDS             11033..12589
                     /locus_tag="PXB38_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL5352512.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12708..14162
                     /locus_tag="PXB38_000141"
     CDS             12708..14162
                     /locus_tag="PXB38_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL5352513.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQAGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            14155..15432
                     /locus_tag="PXB38_000142"
     CDS             14155..15432
                     /locus_tag="PXB38_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5352514.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRTANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(15634..15978)
                     /locus_tag="PXB38_000143"
     CDS             complement(15634..15978)
                     /locus_tag="PXB38_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352515.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            16052..16513
                     /locus_tag="PXB38_000144"
     CDS             16052..16513
                     /locus_tag="PXB38_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5352516.1"
                     /translation="MIKITLNDTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKALDDRTLALKRKRGKSPKILRQDGYLADKTAYNVTNDNVEFGSKEV
                     YARLHQFGGKAGRGKKVSIPARPWLGVGKNDETLLLEKARFHLRKVIAQVR"
     gene            16748..17863
                     /locus_tag="PXB38_000145"
     CDS             16748..17863
                     /locus_tag="PXB38_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL5352517.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17894..18820
                     /locus_tag="PXB38_000146"
     CDS             17894..18820
                     /locus_tag="PXB38_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL5352518.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18889..19170
                     /locus_tag="PXB38_000147"
     CDS             18889..19170
                     /locus_tag="PXB38_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352519.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            19170..19604
                     /locus_tag="PXB38_000148"
     CDS             19170..19604
                     /locus_tag="PXB38_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5352520.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            19610..20107
                     /locus_tag="PXB38_000149"
     CDS             19610..20107
                     /locus_tag="PXB38_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL5352521.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVKLFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            20192..21577
                     /locus_tag="PXB38_000150"
     CDS             20192..21577
                     /locus_tag="PXB38_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5352522.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            21588..22106
                     /locus_tag="PXB38_000151"
     CDS             21588..22106
                     /locus_tag="PXB38_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005664074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5352523.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIGQ"
     gene            22199..22513
                     /locus_tag="PXB38_000152"
     CDS             22199..22513
                     /locus_tag="PXB38_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5352524.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGTVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            22510..22662
                     /locus_tag="PXB38_000153"
     CDS             22510..22662
                     /locus_tag="PXB38_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5352525.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(22641..22943)
                     /locus_tag="PXB38_000154"
     CDS             complement(22641..22943)
                     /locus_tag="PXB38_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352526.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQGLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22991..25648
                     /locus_tag="PXB38_000155"
     CDS             22991..25648
                     /locus_tag="PXB38_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5352527.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYIPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            25658..26581
                     /locus_tag="PXB38_000156"
     CDS             25658..26581
                     /locus_tag="PXB38_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5352528.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNEGGVLGEALNFGRGSLLGSILPSGAVTALSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGL
                     SETLGGLQAKLPAAVAFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            26565..26792
                     /locus_tag="PXB38_000157"
     CDS             26565..26792
                     /locus_tag="PXB38_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5352529.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26785..27849
                     /locus_tag="PXB38_000158"
     CDS             26785..27849
                     /locus_tag="PXB38_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352530.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27836..28372
                     /locus_tag="PXB38_000159"
     CDS             27836..28372
                     /locus_tag="PXB38_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5352531.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            28427..28789
                     /locus_tag="PXB38_000160"
     CDS             28427..28789
                     /locus_tag="PXB38_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5352532.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28799..29902
                     /locus_tag="PXB38_000161"
     CDS             28799..29902
                     /locus_tag="PXB38_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5352533.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29895..30461
                     /locus_tag="PXB38_000162"
     CDS             29895..30461
                     /locus_tag="PXB38_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5352534.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKAAPIRYNNKATYNGTYNHGSS"
     gene            30471..32750
                     /locus_tag="PXB38_000163"
     CDS             30471..32750
                     /locus_tag="PXB38_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL5352535.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRELTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPRLKRTFESAINLNNEDLILDWREVVFLKDGVYQGTFKTT
                     STLESAYRIRAARNDERNQPYLQVVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSASHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKNYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTVMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32751..33353
                     /locus_tag="PXB38_000164"
     CDS             32751..33353
                     /locus_tag="PXB38_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352536.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPQ
                     FERDTWLEQAKEAKAWVADPTVQTPTLALIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIKPMYQLPQGANNEQTD"
     gene            33337..33612
                     /locus_tag="PXB38_000165"
     CDS             33337..33612
                     /locus_tag="PXB38_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352537.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFVNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            33612..33869
                     /locus_tag="PXB38_000166"
                     /pseudo
     CDS             33612..33869
                     /locus_tag="PXB38_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            33960..34124
                     /locus_tag="PXB38_000167"
     CDS             33960..34124
                     /locus_tag="PXB38_000167"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352538.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            34117..34821
                     /locus_tag="PXB38_000168"
     CDS             34117..34821
                     /locus_tag="PXB38_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352539.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
     gene            34990..35109
                     /locus_tag="PXB38_000169"
     CDS             34990..35109
                     /locus_tag="PXB38_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5352540.1"
                     /translation="MNKSLVALAVAAMASKAQTKQQASKQASKQASKQASIVR"
     gene            35157..35952
                     /locus_tag="PXB38_000170"
                     /pseudo
     CDS             35157..35952
                     /locus_tag="PXB38_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            36081..36905
                     /gene="uxuA"
                     /locus_tag="PXB38_000171"
                     /pseudo
     CDS             36081..36905
                     /gene="uxuA"
                     /locus_tag="PXB38_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
     gene            36956..37825
                     /locus_tag="PXB38_000172"
     CDS             36956..37825
                     /locus_tag="PXB38_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5352541.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPIPTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            37993..38307
                     /gene="rsfS"
                     /locus_tag="PXB38_000173"
     CDS             37993..38307
                     /gene="rsfS"
                     /locus_tag="PXB38_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL5352542.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            38384..38851
                     /gene="rlmH"
                     /locus_tag="PXB38_000174"
     CDS             38384..38851
                     /gene="rlmH"
                     /locus_tag="PXB38_000174"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL5352543.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            38875..40824
                     /gene="mrdA"
                     /locus_tag="PXB38_000175"
     CDS             38875..40824
                     /gene="mrdA"
                     /locus_tag="PXB38_000175"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL5352544.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDEPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            40817..41944
                     /gene="rodA"
                     /locus_tag="PXB38_000176"
     CDS             40817..41944
                     /gene="rodA"
                     /locus_tag="PXB38_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL5352545.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            42036..42695
                     /locus_tag="PXB38_000177"
     CDS             42036..42695
                     /locus_tag="PXB38_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL5352546.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            42709..43887
                     /locus_tag="PXB38_000178"
     CDS             42709..43887
                     /locus_tag="PXB38_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL5352547.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            44055..44354
                     /locus_tag="PXB38_000179"
     CDS             44055..44354
                     /locus_tag="PXB38_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL5352548.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            44416..45069
                     /gene="lipB"
                     /locus_tag="PXB38_000180"
     CDS             44416..45069
                     /gene="lipB"
                     /locus_tag="PXB38_000180"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL5352549.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDENTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            45084..46091
                     /gene="lipA"
                     /locus_tag="PXB38_000181"
     CDS             45084..46091
                     /gene="lipA"
                     /locus_tag="PXB38_000181"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL5352550.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            46278..47384
                     /locus_tag="PXB38_000182"
     CDS             46278..47384
                     /locus_tag="PXB38_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352551.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEIPRIEQAGIPVVVVDFNKQTVENHTKSV
                     RVFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFG
                     KNMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSM
                     GINIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALY
                     PELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(47446..47625)
                     /locus_tag="PXB38_000183"
     CDS             complement(47446..47625)
                     /locus_tag="PXB38_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352552.1"
                     /translation="MLLSEGKIHAQGRACDVLECDIIQRLYNVNIEILYDGNGSPIIR
                     PLRKCLNIDCCLNRK"
     gene            complement(47625..48230)
                     /locus_tag="PXB38_000184"
     CDS             complement(47625..48230)
                     /locus_tag="PXB38_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5352553.1"
                     /translation="MLNLNDVTIKRGNLVVADKINLHFEQGKIYTLLGPNGAGKSSLL
                     KTLFGEIAHQGTIDFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDS
                     LNMYISDELLNEAVDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDE
                     PVSALDMYHQINLLEYVNAYTRANNLITIMVLHDLSLAAQV"
     gene            complement(48240..49190)
                     /locus_tag="PXB38_000185"
     CDS             complement(48240..49190)
                     /locus_tag="PXB38_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005697612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5352554.1"
                     /translation="MCLLSLIFDIMTGPSLLPFNEVWKALFQLGEIEETTKVIVYELR
                     LPMAIMALVVGAALGVGGAEIQTLLNNPMASPYTLGLAAAAGFGASIVIAFGGFGLPT
                     EISVPVGAFVMTLFSSAILFAFSSLGRFSSAILVLVGIALLFLFQSLLSLVQFISAPE
                     VSQQILFWLFGNLTKATWQTISIAFGVTTVCILLLFKDAWKLTALRLGEARALSLGIN
                     LTWLRMKTLLIVSVMTATCISFVGIIGFIGLVAPHIARMLLGEDQRFFLPGSMLVGAA
                     FLSMSSVLSKSLVPGALFPVGIITALVGVPFFFWIVLAKR"
     gene            complement(49368..49958)
                     /locus_tag="PXB38_000186"
     CDS             complement(49368..49958)
                     /locus_tag="PXB38_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL5352555.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATQELS"
     gene            complement(49959..51437)
                     /gene="modF"
                     /locus_tag="PXB38_000187"
     CDS             complement(49959..51437)
                     /gene="modF"
                     /locus_tag="PXB38_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL5352556.1"
                     /translation="MQTQPSLTITNARFSLVKQHKLTIDALQIQPNDFWVVVGGNGSG
                     KTAFSLALQDKISLYSGDYGNSFQHIQLLSFEQQQKMLDQIFKDRNNDSVSPDDFGLT
                     ARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHLSTGESRKVLFCQMLVSEPDLFIL
                     DEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRFNDIPDAANHIALLDNLSLILQGE
                     RAEIEQQAVYSQLKFAEQNVNVPLPESAAPLNSLPENINPFELEKVTIQYGEKKILDN
                     LSWTVEPKQHWWIKGPNGAGKSTLLSIITGDHPQSYANKVRLFGKQRGSGETIWDIKK
                     NIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQQVPNALQLKAMEWLERLNLSNVA
                     KKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQGLDGINRKLVKQFIEQLVTNSQT
                     QLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEYHQTALGA"
     gene            complement(51450..52403)
                     /gene="fmt"
                     /locus_tag="PXB38_000188"
     CDS             complement(51450..52403)
                     /gene="fmt"
                     /locus_tag="PXB38_000188"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL5352557.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPASKKPMSVQDFLNGRADWFVSGTQLS"
     gene            52518..53129
                     /locus_tag="PXB38_000189"
     CDS             52518..53129
                     /locus_tag="PXB38_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL5352558.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            53133..54617
                     /locus_tag="PXB38_000190"
     CDS             53133..54617
                     /locus_tag="PXB38_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL5352559.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNKLRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLIVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            54618..55145
                     /gene="hemG"
                     /locus_tag="PXB38_000191"
     CDS             54618..55145
                     /gene="hemG"
                     /locus_tag="PXB38_000191"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL5352560.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            55278..55673
                     /gene="mscL"
                     /locus_tag="PXB38_000192"
     CDS             55278..55673
                     /gene="mscL"
                     /locus_tag="PXB38_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL5352561.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(55786..56049)
                     /gene="rpsT"
                     /locus_tag="PXB38_000193"
     CDS             complement(55786..56049)
                     /gene="rpsT"
                     /locus_tag="PXB38_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL5352562.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVTAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
BASE COUNT        17220 a        11052 c        13103 g        14875 t
ORIGIN      
        1 ttgttgattt taaaagctat tgaaataaac cgttggtaaa ttgcaaaaat ctttttagaa
       61 actattgagt ttctgaaaaa ttaagtgtat agtttccaaa gtttccaaag aataattctt
      121 aagtataagg ataacacata atgacagaga gcaacaaaca acaagatatg caccgagcag
      181 atattgttgc gtcagtaaga aaagctggca caacacttgc aaggttatct gtagaagcag
      241 ggttacaccc aagaacccta aataatgcac ttgagcgtaa atatccaaag ggtgagcaaa
      301 ttattgctaa tgcgattggt aaaactccgc aggagatctg gccatctcgt tactcataag
      361 gagggcttta tgaatgaatg gttctcagca aacgatcttg ctggattgaa aggaatgcct
      421 agttctccgc aaggtgtaaa taaaaaagcc agattggaac agtggcaaaa gcagcaacaa
      481 aatgggaagc aggggaaagc ctacgaatac cacctccaca gcctaccgcc tgaaacccaa
      541 caacagctca gactaaacgc cgcccttgcg gtaataccgc aagcggcaga actacaaccc
      601 aaacgagacg accccgcact tatcgcaagg ctcaataatg ccaccgataa aggcagggat
      661 aaagcaaaag gcaaggcaga agcctgtatg cagttgcaag cctttctcga ccaagggttt
      721 agttatacgc aggcagaagc gggagcggca accgctaaaa atgtgtcgca aggttcttta
      781 aaaaattggt actacaaagt gaaaggtcac cccgtccatt tatggcaggc gatcttaatt
      841 tccgaaagcg gtaggagtaa aaagccgcag ctgaaagcca agattactga agaagcgtgg
      901 gactgctttt tggcggatta cctccgccct gaaaagccgg atttacgggc aagttaccgc
      961 cgaacccaag ccatcgccaa gcaatacggc tggcaaatgg caagtttaca gactttccaa
     1021 cgccgagtgt tggcggaagt gccttacgag gtgattttgc tcaaacggga aggagcaaat
     1081 gcggttgcca agttagtgcc ggcactacaa cgcacggtga aagatattct cgcaggagaa
     1141 tggattaacg gcgatggcta ccagcacaat gtattcgtga aatggcacac tggcgagatt
     1201 gtccgcccta aaacgtggtt ttggcaagat gttcgcaccc gcaagatttt agggtatcga
     1261 acatcgattt cggagaatac tgacagcata cgccacgcat taatggatgt gatttttaac
     1321 gtaggcatac cgaaaacgct cacgctggat aacacccgag cagcagcgaa taaggcaatg
     1381 accggtggta ttgaaaaccg ctaccgcttt aaacataccg agttagaccc gaaagggatt
     1441 atgccgattt taggcattga ggtgcatttt acctcaattc tttacggtga aggacacgga
     1501 caagccaagc cgattgagcg agcttttggg cgaggtggca ttggcgagaa aatagataaa
     1561 cgccctgaat taagtggttt ctatacgggc agaaatgcac aagaaacccc tgataactat
     1621 aacggcggta aagacggtgt ggattacaac actttcttga aagccatagc agcagggata
     1681 gaagagtaca actctcaaac cgaacgccat accgaaatgt gccgaggaga attgagtttt
     1741 aaccaagttt gggagcggga ttaccaccca agcaacgtaa gacaagccag ccctgaacag
     1801 ttgcggttac tgttcttaca ggcagaaacg gtcagcatta aacgcaacgg cagttttacg
     1861 ctgaaagcag ccggcaaact ttacggctta actaacgttt actgggcaga aagcctgata
     1921 gggataacgg ataagaaagt agtggcacgg ttcgaccccg atgacttaca cggcaacgtg
     1981 tatgtgtaca acctagaggg gcaattctta gccgaagcgg tttgccgaga ggcgaaagga
     2041 tttggtgata ccagtgcaag ccgtgagcaa ggtcgcttat atcagaaagt agtgaaaagt
     2101 gccaaagctc aagccgaagc ccttgaatta ctggaagctc acgaactggc aagcctcgcc
     2161 ccacaagtgg acgtgcctga gccgatagag aagaaggtaa aagaggtgct ggtgaaagaa
     2221 gattttatcg tggatttcaa cactgtgcgt aaagcaacgg tggtggaaga aaccgaagag
     2281 atcagtattt ttgatgaagt gttactgaaa caagagaaac aacttcgcat agtggaataa
     2341 ctagcggtca gtttttgcaa aaaatttgca aatttttcta aaaaaacgac cgcttgaaat
     2401 gagatttaaa cagggtttaa acgcctttaa ggagtaaaaa atgacattaa cagggcaagc
     2461 ttaccgagtg attttcaagg aactcaaaga gcaacaagag agtgaatttg aacaggcttt
     2521 caagaaaggg attgccaaaa ttcagcagaa tcaaactcag gaatccattc tggtaaaccg
     2581 tgatatgttt caagctgaaa agctaacact gctttcacaa aagttggaag cggttgagca
     2641 attacttcgc cttgaattaa atcagccgaa ttttcaagca aaacttgaag actacgctga
     2701 cgcattacga acaaccattt taagtaaagt agccaaataa gagctttaga ctcttgaagg
     2761 cttaacatct gagccacttt ttttactgtc ggcattatac cgtcaagatc atcaatagaa
     2821 gttaaatgat gaaaagagga atggtattca gctaaacaaa aattgattgt actaagttta
     2881 aacaaagtaa tgcaattttt catcacgatg gcatttgctc gttttaactt aaaaccagag
     2941 aaggttgcac gagcagaatc aagggctatt tgatgaattt catcatctgt taaagaacga
     3001 aagagcataa aaacctccaa acaaaaacag gacaccatta tgacattaat cgaccaaatt
     3061 aaacaacaca tcgccgaaag cggcagttct caggggaaag ttgccaaaga agccgggatt
     3121 aatgccgggg cgttatcggc ttacctgaat gaaaattaca aaggcaataa tgaagaactt
     3181 gaagcaaagc tgattgctta tttagagcgt attgaggcga agaaaagaga gtttgtcgaa
     3241 gctccgagtt ttattgaaac caaaaccgca aaccaaattt tcggttcgtt acgatttgct
     3301 caaaatactg gcgtgcttgc cattattcac ggtgcgagtg gcgtgggtaa aacacaagcg
     3361 gctagagagt atcgtaaacg ctatgcgaat gtatggttgg ttaccgcaag cccttctcgt
     3421 tcctcattaa gtgaggtgtt atatgaaatt gctcttgaac ttggaatgaa cgatgcacca
     3481 cgccgcaaag ggacattggc tcgtttaatt gttcgcaaaa tgaaaggcac agcaggttta
     3541 ttaattattg atgaagcaga ccatttacct tacgaagcct tagaagaatt aaggctgtta
     3601 caagaagaag tagtgaatga aagtgacatc ggagctggtg ttggcttagt gctgattggc
     3661 aatgacaaag tctacacccg aatgaaaggc ggaattaacc ctgctcacga atatgggcga
     3721 ctttggtcac gcagtgccaa acgcaccagt attcagaaaa ccaaaaaaga agatacccaa
     3781 gcggtagcca aagcgtgggg gttgagtgaa aaccaagaag cactcaaggt aatgcaagcc
     3841 attactgaaa ctggtggcgg attacggatt ctgacacaca ccttacgatt agcagcgatg
     3901 gtagcaaaag accgaatgat tcccttaact gccgatttaa ttcagctcgc acgtaaagat
     3961 ttactctcaa caggagatta acaatgagaa ccccaaaacc caaacacagt tttaaccgca
     4021 ccaaccaagc agcgtgccgt tttttaaaac aaacccaaaa ggcaattatc cgcttaaaca
     4081 gtcttggctt tacggtgctg aatattgatt ttacccgtat taagccccgc attgaggtgg
     4141 aaatcggcaa taacaagcac attgctcaag gcttgattta tgagggtaaa gcctaccgct
     4201 acagcttcgg taaaagcgaa gatttaggca gatgggaagg ctactacacc atgctggaag
     4261 gtatcagagt gtggtggcga caagcagcaa ttcactagga gaaaaacaga tgaaaacctt
     4321 agcactatta accgcccttt tagggcttgt agggtgtgat ttagtccaaa gcaaacaagc
     4381 taaaaattac atcggcaaca atttaactga aatctgtata gataacgtgg tgtacctgat
     4441 ttattccggt gataaaaaag gcggaattac cccgaaagta aataaagatt tttaccctta
     4501 tacctgtaca aacaaagagg aaagacaaaa tggcaaaacc cgatgaaaca cccattacaa
     4561 aagcagaatg tcaatctcag cttgcagagt tgggggtgca atataaaaaa ctgccaatgg
     4621 caattacaag acatatttgt aatgccacaa ccaatataca cggcaaagtt ataaaggtca
     4681 gtgtggtaga gagagttgga tatggcgtcc agattaccgc acaaggtaac gagaaatctt
     4741 gcttagtaac ctatgaagca atgttaggta tggcagaagc aatgggatta tttgatgaag
     4801 ttaaggagca aaataatgac taaaaaaaca accagagtaa aaagtgcaac ccaaagtgcg
     4861 atttatcaaa gccgagatga agtgcaagtg gctataaaaa tcattggtga taaacagcgt
     4921 gaattgcaac gtttagctac ggcaatgaat gatgaattag ctgctattag tgccagttat
     4981 gctcaacata tagatgcatt aaaagaagat attaagccaa tgcaaaaagg tgtgcagatg
     5041 tggtgcgaag tccaccgcaa tgaattaacc gataacggca agtgcaaaac aggctcattt
     5101 gttacaggcg aagtgcaatg gcgagtaaaa ccgccgtcgg taagtgtgcg aaatgcggag
     5161 agtgtgattg agttattaga aaactttggg ctacaccaat ttatccgcac caagcaggaa
     5221 gtgaataaag aggcagtttt agccgacccg caagcagtat cagcgattga ggggattaac
     5281 attaaatcgg gcgaagagga atttattatc aagccgtttg agcaggaggt gaagtgatga
     5341 gtgatcaatc gatagtaatt cttgcctatc ttgcgtttgc ggctttcgtg atgtggttgc
     5401 actacagaag ttaaaaccct tttcaatgcc ctttaaaaat ctcccctagc ccctcttttt
     5461 caaagagggg aacaagatag aagggcattt ataaagtgtt ttaaccacag gagaacgaaa
     5521 tgaaaccaac agaagcaaaa tttaaccgct accaacatta tgccgagaaa gcggctgaag
     5581 cagaacgcaa aggcaactat aaggaagctc aagaccattg ggaagttgca aaattatcag
     5641 caaaaaagac cgctaaccga gactgggcgg aacaacgagc ggaattttgt aaacgtatgc
     5701 acaataaacc gttttagggg gaagtgatga cagaaaccgt aaaagcacaa cttaacagcc
     5761 aattaaatga ggcaattatc cagttgatac aagctcaaaa gtatttaaac caagatgatg
     5821 ccattcgcag tggagtgtat atcggtacgg tgcaggattt attgccaaag gtgcatttaa
     5881 agttattaac ggcaaatcgt aaacattgat agagatgagg taaaaatggc tattacagaa
     5941 gaacaatgga aagaaattaa gcaaaagcta gatagtatca tagggagagt taaatttaga
     6001 tacaaagagc atttactcac ggtagatgtt gtacaaatta agcgatcttt aaaattggct
     6061 gtgtatgttg atggggaaat tgatggagct tggacaaaag aaggacacga aattcgccct
     6121 tatttagaag aagtttggta tcgcaaagaa cgcccttttt ttaatgctaa ggagaagaaa
     6181 gagtatagag gtttaatgag caaaaaaaaa ctgaatgaaa aaatagtaac ctactcacct
     6241 atgtttccat caccaactgc actgactcgt caatataaga aactagatgg cttagagttg
     6301 attgaagtga tttaaaaccc atttacagcc catttaaccc cgagttattt aaaggacaac
     6361 aaaatgaata aaaacgaatt ttttaagaaa taccacctag agggttcact agctattttg
     6421 gatttggatg caaatgacga tcaaagccaa ttctgttacc aagcattgtt ggagtataga
     6481 gaactcccgt tagacacatt tcttgcagag tactcagatg atgaggatat gacagagtca
     6541 gagtttattg agttaatgct tgatgaatta gagtggatta tccgcagagc taagaatgct
     6601 aaacggtttg ttaaaaaacg acaaaaaacg atgagggagg aaattatgta acagctcaac
     6661 ccaaccaacg ccacatcatc cgtctagctg agaaacaggt gtggcgtttg ttttaagtgg
     6721 gcaatcaaaa gcgataacgt ttttaattgt ttatttatcg gagtaacaaa tgacagacaa
     6781 agccaagcta atccagctta tccatattgc caagtcgcaa ctagcaatgg acgatttaag
     6841 ctaccgtgaa atgctgaaac ggctcaccaa taaaaccagc tcgaccaaat gcacggtggt
     6901 cgagttgcac aaagtcttac acgaactgca aaccaaagga gcaaaagtaa aatattttgc
     6961 caaacgcagc aaaaaaccga ccgcttacag cccggcaaca ggggaaacag cggtaaaaag
     7021 ccaaattgct cataaaatcc gagcggtatg gataacaatg ggcaaacacg gatttttaaa
     7081 cgacccaagc gaaaaagcat taaatgctta tatgcgtaag gttatcaata ataaaactag
     7141 accaacaata ttattaaatg tctctgcatt agaggctgga gatgcaagtt atatgcttga
     7201 aatcctcaaa aaatggcata aacgtgtgat gattaaagcc ctaagcaaaa gttgcacagt
     7261 tgatccaaag ataagctacg atgaattagt ggagtggtac aatgaagtta tgtagatgcc
     7321 cgatttgcca cagtgatata cacctagaag ctctcgtaga agatgaagcc gggcgtgaac
     7381 tactcggcaa aatcagccaa ttaacacacg gtgttgctca accgatggtt gcttatttag
     7441 gcttatttaa accgcaaaaa agtaacctta ataactcaag agccttgaaa atactcaatg
     7501 atgtattagc actctaccct tgctcattgc tactggctca agccttatct gaaacggtag
     7561 taagcatacg caaaaaacgt cagcaagcaa tggaaaacgg gcagaaaatt gaaccgctac
     7621 cgaaccataa ctatttaaaa tcggtgtatg aaacgcaaaa agtccatttt gctgtggtga
     7681 gaaccggcaa aaccgaaagc gaaacaatga aagccgaaca agccgaactg gaaaaaacac
     7741 gcaatgcgat tgcctatgtg caacggtttg ttgatttagg acgtgaagag gttgttaaaa
     7801 atagccctga gtatcagatt tggttagctc ataaacccaa ataacacaag ccaccaaaag
     7861 gtggcttttt aactttttga aagtgcgata aaacctgatt taaacaggct ttaaacgggt
     7921 tttaagattg agtttaaaaa aatatttcac aaaataagaa tggtttttta tacaataacc
     7981 gaaacggttt ttggatagga aatagacaat ggaattagtg gatatttttg aagaaaaagc
     8041 cccggaagtg ttaaccgatt tagccaaaca tattgaagtc gcattagaag aaaaatgcca
     8101 atttagcccc gaaaaggcaa agcaaatcgg tattgatatt gcccaacaaa tggctcaaaa
     8161 ctggggtggc gaggtaattt atattcctcg caatttgttg atggctctta atgagcgaga
     8221 tatgaaaatt tacgaagagt ttaacggtaa caatcaccgt gaattggctc gtaagtacaa
     8281 tgtatcaatg cagtgggtat ataaaattgt gaagaaagtc cataaggacg aagttgcccg
     8341 caggcagatg agtatgtttg agatgtaaat cattttttcc cagccctgat cattttcagg
     8401 gctttttgtg tattaaaaga acgcagtctt taaacccgtt taaaatcaat ttttcagcaa
     8461 attctttaaa ctccttttaa agcaatttta ataggagtgt gctatgtctc aaaatcttac
     8521 ctttcgccaa atttttgacc gtttaatcgg acacgagggc ggctatgtca atcacccaca
     8581 agacccgggc ggagaaaccc actggggaat taccaaacgt accgcggttg ctaatggtta
     8641 tatgtatgca atgaagaata tgacccgtga gcaagcctac caaatctacg aaaaagcctt
     8701 ctggcaacgt tatcgttgtg cagagcttaa gccagcagtt gcttatcaat ttttcgacgc
     8761 agtggttaat cacggttttg gtaatgctag tcgtatgtta cagcgtgcag taggcgtagc
     8821 ggatgatggc attattggca atattaccct gcaggcaatt aatgcaaaat ctgaaagcga
     8881 tctcttaatg ctatttaatg ccgaacgtct gaagttttac acaaaattac gcaacttccc
     8941 cacttttggt aagggttggg tcaatcgtgt ggcaggcaat ttagaatacg cagcacaaga
     9001 taatgaggtt taaaaatggc aaaactattt aaagaactac tctcaaccaa tggcacatta
     9061 tccaccacta gcaccgtgca gttttttggc acattgtgtg tatttggttt aatggtttat
     9121 gcagtaatta cccaacaacc ttatgccgaa agcctattaa ataatgtgtt gatttatctt
     9181 tttggggcaa ctaccgctaa gggtgtagta accagctatc aagccaaaat taaagggggt
     9241 atccataaac aacaaagtac atttaaagag gaggagggat gttaatgcaa caaattttag
     9301 gcgtgattgg cgtcatcgca gcaatattgt cttatgcttt gtttaaaagc tggcaactaa
     9361 aacgtgagcg taaaaagaat gccatattac aagctgaaaa acagcaacaa gcggttgaaa
     9421 ttgagcaaaa aaaagcagag gtaaaatatg cgtatatatc aaagaaaaac aatgaaaaag
     9481 ttactcgcag ctctgctagc gatattgatg acaagttgca gcaacacggt tacttccgtg
     9541 acaacaacag gttgcacggc gttcagtctg atttatccga accgtgcgga tacgctggaa
     9601 acgaaacgtc agattcttgc tcataatctg acttttgagg aaatttgcca aaatgaaata
     9661 cattaaaaaa ttacgtaaac gctggcaaat ttggcgtttt ttaaaaaatc atcctgaggt
     9721 tgcacaacgc cgagatttat tagcgattgc cattaaacag ggcgtagaaa accctgtagg
     9781 gcgtgcaaga cggagggagc cataatggat ttatttacag tcttttggga gtctatccgt
     9841 gctaactttg gttttatttc tgcgttactc accattgttg ttacggcatt ttggctcaag
     9901 ctagatagca aatacgccaa gaaaaatgat cttggtgaat tgctggaaat tgccaaaagc
     9961 cacgataacc gcttaaccac cttagaaacc aaggtagaaa acctgccaag tgcggtggac
    10021 gtggaaaagc tgaaaacctt agtcactgat gtaaaaggcg ataccaaagc cacctcaaag
    10081 caggtggata gtatcagcca ccaactcggc ttgttattag aagcaaaatt aaaggaatga
    10141 tatgtcgtta agagatttac tcactcaaga ccaacggctg gtgattttac gctcattagc
    10201 ggaagccggc tatgatgcca atgagtcaat tattagtgat tgcctagatt tatacggtca
    10261 cgatattagc cgtgatttag ttcgcaccca tttaagttgg cttgaagagc aaggcttact
    10321 taccttagaa cgtttgcgag atggctatat ggtggcaagc attacccagc gtggcttaga
    10381 tgttgctcaa gggcgtgttg tggtaagtgg cgttaaacgc cctcgcccta aaatttaaac
    10441 ggtatttaag gagcgtttaa atgagcgaga aaaatactcg tggtcgagca tcaaaagtcg
    10501 atttactgcc gccgaatatt aaaacccaac tggcgatgat gttgcgtgat aagcagtact
    10561 ctcagtcaca aattttagaa gaaattaatg acttaattcg ggattgtggc ttgcctgatg
    10621 aaatgctgtt aagcaaaacc ggattaaacc gctacgcaag ccgtatggaa cgcttagggg
    10681 caaaaatccg taatgcccgg gaagttgccg aaatttggac taagcaattc ggcgaaatgc
    10741 cacaaaccga tattggcaaa accctaatgg aaatggtcaa gcaaattgcc tttgaaacct
    10801 cattgaaatt aggcgaacaa gaaggcggta ttgagccaaa acagcttgct ttgctctcgt
    10861 ctgctattca acgtttagaa caagccgaaa gtttgagttt taaacgggaa caggcaatcc
    10921 gtaaagaggt cgcacaacaa gccgctgaaa ccgctgaaaa agtggtggtg caagcgggtt
    10981 tatccgctga aaccgtccgt acgattaaag agcaaatttt aggaattgca taatggcact
    11041 actcaataac agaccgctga atgaattagc ccctgaatgc cgttcgtttt tagagagcat
    11101 tcacgctttt aatcctaacg aactgttatt gggctatcaa aagcggtgga ttgcggacga
    11161 cagccaactc aaaattgccg aaaaaacccg ccgttgcggt ttaacgtggg cagaagcagc
    11221 agataacgcc ttaatcgcaa gcacccgcaa atcagacggt ggctctgatg tattttacat
    11281 tggctcaaat aaagagatgg cacgtgaata tatcgatgct gtcgcaatgt gggcaaaagc
    11341 ctttaatcgt gtggctggag aaatccaaga agagatcttt gaagacgaag ataaagacat
    11401 cttaacctat gtaatctact tctcatcggg ttttaaggtc aaggcattat ccagtaatcc
    11461 gaaaaacctg cgtggtatgc agggcgtggt ggtgattgat gaggcggcat tccacgaata
    11521 cttagcggaa gtcttgaagg cggcgttagc tctcacaatg tggggggcga aagtccgtat
    11581 tatttcgacc cacaacggct cggaaaatct gtttaatgaa ctgattaccg atagccgtgc
    11641 cggccgcaaa cgctactctg tgcatacgat tacgattgaa gatgcctgcc gtgatgggct
    11701 atatcaacgt atctgccaag tagtgacgaa aaaaacgtgg tcaccggaag cagaaaaaga
    11761 gtggattgaa aacctactca acgacaccgc cagcgaagaa gacgcattag aagaatactt
    11821 ctgcgtaccg aagttcggct caggcttatg gctctctcgt gctttgattg aacggcagat
    11881 gagcgaagcc acgcctgtta tccgctttac ggcaaaagat ggtttcagcc ttgtggctga
    11941 accgacacgc tatgcggaga ttgccgaatg gtgtgaatta gaacttgagc cgatattggc
    12001 aacccttaac cctgatttgt tgcattttat gggcgaagac tttgcacgca gcggcgatat
    12061 gacctctctg gtggtgcttg ctcagcaaca aaaccttgtt cgtaaagtcg cctttattgt
    12121 tgagcttggc aatatgccct acaagcaaca agagcaaatc gtgatgttta tgcttaaacg
    12181 cttaccgcat tttgccggtg gggcttttga cgcccgaggc aatggtggct atttagccga
    12241 agctgcacga gatgaattta gcaccttgat tgactgcgtg cagttatcgg aaaaatggta
    12301 tcgggaacac accgccccct ttaaagcggc attggaagac ggcgagctgg aagctattcc
    12361 aaaagatgcg gatattttgg ctgatttgcg ttcatttcag gtggtcaaag gcgtaccacg
    12421 cataccggat aaacgcacta aaagtgcaga tgggaaaagc aaacgacacg gtgataccgc
    12481 aatttctttg ctgttggctc attatgccag ccgacaatta gtgcaaatgc cagttgagcc
    12541 ggtatcacgc cgtccacgcc atagccaaca attaacagaa ggatattaac aaatgagata
    12601 tgtaccactt tgtttaatga tgtgtgcctc attctaccta tttattaaca acattgacgg
    12661 ctggggttgg ggaattcttt tatcttttat tttagcgagt gcagcttatg gcaaagaaga
    12721 ataatttaat tagtgaaatt gccacccgtg ccagaagtat tgattactgg gcatttggct
    12781 attatctgcc gaaccctgac ccgattttaa aacgaatggg gaaagatatt tccgtttacc
    12841 gtgagttgtt atcagacggg caagttcgct caggcgtacg ccgtcgaaaa gcggcgatta
    12901 aaggcttaga gtggcgaatt accaccacta acaatgagaa agtggacgag cagatttatc
    12961 aaatatttaa ccgcttgccg atgaataacc tgattaccga aatgctcaat gcagcactct
    13021 atggctacca tatcagcgag gttatttggg caaaagaggg tgagttattt gtgccaacag
    13081 aaatcattgg taaaaagcct gaatggttta tgtttgacga cgaaaaccta ctgcgtttcc
    13141 gtaccaaaga aaactgggcg gacggcgaat tattaccaga tgataagttc ttgcttacta
    13201 cgcaagaagc cacccaagat aatccctacg gtttaggcga tttatccctc tgcttttggg
    13261 cggcgacctt taaaaaaggc ggtttcaaat actggttgga atttaccgaa aaatacggct
    13321 caccgtggtt gattggcaaa caccctcgcc aagctcacaa tacagataaa gagcgactag
    13381 ctgatgccct agagggaatg attagctcag cgattgcggt tatccctgaa gatagttcgg
    13441 tcgaaatcaa agatgcagcg ggcaaatctg ccagcaccga tgcctttgaa aagttcctca
    13501 atttttgcaa ggcagagatc aatatcgccc tacttgggca aaaccaaacc accgagcaag
    13561 aaagcaaccg tgccagtgca caagcaggct tggaagttat ggaagatatt cgctcggacg
    13621 accaagcgat gattgaagcc accttcaaca ccttgttgca gtggattgtg aaatataact
    13681 tcaatgtgga acaactgccg aagtttgaat tttacgagca agaagccatc aacaccgacc
    13741 aagttgaacg agacagtaaa ctccacgcaa tgggcgtgcg tttttccaaa gcctactttg
    13801 agcgtgaata tggctttgag gcgggtgata ttgaggtgca agcggtcgaa aaagcggaaa
    13861 aatctgcaaa taccacagaa tttagcgaag ggcaacgccg aacccaagtg ccaatgcctg
    13921 tgccaatttt ggaacagcta gaacacgagg gagaagcaat ggtggacgat tggctacaag
    13981 gggtgagaga taaactcgct caagcagata gtctggagga tttccaaagt cagctagata
    14041 gccttatccc tgaattaagc tttgccgaat atggcgagct gttggcgtta ggctcaacgg
    14101 tggcagagct tgcaggcaga caatcggtaa acgatgaaat taaggcaaaa cgcaatgcgt
    14161 aaatttacct ttaaacagca agcccaatat tttgagaaaa aactcaatct ccgcacgaat
    14221 agctaccttg atattctggg cgaagagcac gactattttt tcgtggtggc tggggcgaat
    14281 cgtaatgaag tgttgagtga gtttcgcaag gcggtggatg aggctattca caacggcgaa
    14341 accttagaga actttcgcaa gcggtttgat gaggttgtgg caaaaacagg ctgggagtac
    14401 aacggcggac gaaattggcg aacacggatt atttacgata ccaatgttta cggggcgtat
    14461 aaccgtggac gtttgcaaca acatttagag cttgcggagg atatgcctta ttgggaatat
    14521 caacacaacg acaacgccca ccctcgccca cagcacgtgg cgtgggacgg cttggtgctg
    14581 cgttatgacg atccgttttg gaaatatcac tatccaataa aagcctacgg ttgccactgc
    14641 accgtgcaag cgttagatga ttttgacctc aagcacgatg gtaaaaccgt cagcccacca
    14701 cctgaaattg agtttgaaca aaaaacggta ggcgtgcgga caggcaattc acgagtcgta
    14761 actgtgccga aaggggttga tgtgggtttt acaccgcata attttgataa tctcaaagcc
    14821 gggagaacag caaatgtaga taagttgcta atgcaaaaaa tggttaccgc cgatcctata
    14881 tttgcctcca aagcagtcag tgatttattg gcaaaagagc cggttgcaaa gttacataac
    14941 caagccttta aaaattgggt aaatgatgtt gccaatgcta aaggaagtgc attatcccaa
    15001 gtagagaata tgcagttgtt aggggtacta cctgttgcgg tgattgaacg gttacagcag
    15061 atcaatttag ctccgcaatc tgcaattatt gcaataacaa aaggcgatat ggtacacgct
    15121 ctacgagagc taaaacaaaa taccggtatt gccgtaccgt tggaattttg ggaaaagttg
    15181 cctgcaaagt tacaataccc aaatgccatc ttgttggaaa aacaacaagc agaaactaca
    15241 ttgctcttta tctatgacgt agctcaaacc aaaattgccg taaaagtcaa ttatgatgca
    15301 actttacaag atagacacgg agcaaaagga cggcagaaag tcttactgaa tcgagcggtt
    15361 acaggtagtt tattccaaga tacaactgga ttgaaaagtt caaagtatga agtgctattg
    15421 ggagaaatgt agcggcgaag gactcgaacc ttataatgta ggttaaacct acaaccttta
    15481 ccaattagga aactaccgct acattgtgta aattcactat acccctaaat tattttttaa
    15541 tcaataggag aaacaaaatg gcagaaaaac aactttcctt taaagtagcc gaaatagtgc
    15601 caatgtcagc tattaacact atgcggcact taattagttt ggcattacaa gcgaattatg
    15661 agagagaaaa atctcgtgct tgataatttc aatggcttgt agttcgggaa ctatattatc
    15721 tgaaacaagc cattgttttg ttgatgtcag acatttagcg atgaaatcca taattaaacc
    15781 attagcagta gctcgttgtt ccggagtaag ttgtaaccac gatgcctctg tttgttggtc
    15841 taatgtataa agaaacataa cggcttcttt ttctgataat gggtcaagtg gtaatttttc
    15901 agcttttgtg actaaccatt gacgggaaag caataaatca taaaccagtt ctattgcttg
    15961 ttctgcattt accatcatat tctaattcct taatatatca gggcaacatt acccaatcta
    16021 tattttactg agttttactg agatttgctt aatgatcaaa atcaccctca acgacacaca
    16081 agcggtcaaa tcgttacaac aaattgcaaa tcagctggaa caacctcgcc gactgtatgg
    16141 cattttaggg gaaaccctaa agaaaattca cacggcacgc tttaaggcag agcaagaccc
    16201 tgatggcaat aattggaaag cattagacga ccgaaccctt gccttaaaac gcaagcgggg
    16261 gaaatcgccc aagattttgc gacaagacgg ctaccttgcc gataaaacgg cttacaatgt
    16321 tactaatgat aatgttgagt ttggctcgaa agaagtctat gcaaggctgc atcagtttgg
    16381 tggcaaagct ggtcgtggca aaaaagtctc aattcctgct cgcccgtggc taggtgtcgg
    16441 gaaaaatgat gaaaccttat tgcttgaaaa agcccgtttt catttgcgaa aagtgatcgc
    16501 tcaggtgaga taaacctcaa aaatcaaaaa taagcgataa aaacgcctac gggcgttttt
    16561 attttgtagt cacctgatta tttgcctaaa aaaatttaaa cgctctgaga gcgatttaaa
    16621 cggtatttaa acggtgttct atattgggat aaattccctt ttcccaaact tcccttaaaa
    16681 aatctttaaa ccagtttaaa agctaatcct ttcccaaccc attattattg ccccatacgg
    16741 aggcaatatg acccaaattg aaatttttaa agccggtaag cgttatgacg ccaacggcac
    16801 gttaattgac attacccctg aaatgttgca acagaccgtt gctgcctata accccgaatt
    16861 tcacgaagct ccgctggtga tcggacaccc gaaatccaac aaccctgcgt gggggtgggt
    16921 aaaagccctt tcccttgagg gcgatgtact aaaagcagaa gtagatcagc tagacgctga
    16981 gttttcagaa atggtggcaa gcggcaaatt caaaaaagtc tcggctgctt tttacttacc
    17041 tgatagcccg aataacccac ataaaggcgt gttatcgcta cgccacgtgg ggtttttagg
    17101 ggcaatgcca ccggcggtta aaggcttaaa gcaggtggaa tttgcagaag atgatgattt
    17161 tgtcgtcttt tctgaatggg gggttgcaag tctatttagt cgttttcgtg attggttggt
    17221 gagtgagttc gggcttgaaa aagccgataa agctcttccc ccacacgaaa ttgattggct
    17281 gaaagaagag gcaatgcgaa gccaaattag caaacaggta cacgccgaac aggcaacacc
    17341 tgaaccgatt tttaatgaac ccgcacaacc agaaggagaa cctgaaatga gtgcagaaga
    17401 gaaggaagag cttgaacgct taaaagcgga aaacgagcag ttgaaagccg aaaaagccca
    17461 agccgaagca gagaaaatgg aagcagagct ggaagctgaa aaagctggta atgcagagtt
    17521 ttgtgaaggt ttagtcaagc aaggcaaact tgccccggtg gcaaaagcgg cgtttgtgca
    17581 ggctttaaat aacctttcag tattaaaagc cggtcgtgag ccggaattta atgagggcga
    17641 agatgtggtt tcacagttta agtctgcaat gtcgcaatca ccacagatta tccaatttgg
    17701 agaatatgcc acagcagata aagccaaccc acaagaagcg gaagcagtgg aatatgctga
    17761 aggcacagat ccagtttcga ttgaagccga ccaaaaagtg cgagcttata tgaaagccca
    17821 caatgtaggc tacgctgcgg catttaatgc gatttatcgc taatgtttaa cccacaactg
    17881 aaaaggaata ctaatgacaa ctcataactt acaaaaactg cgtgtacaag accccgtttt
    17941 aaccgagctg gcacaaggct atcacaataa cgagctggtt gccgagacct taatgccgac
    18001 tgtcgaaatc gaaaaggaag caggcaaaat cccaactttc gggcgtttag ctttccgatt
    18061 gccttctacc gtgcgtaact tgcgtggttc atctaaccgt ttagatccag aagatattgg
    18121 ggcgattgat gtggcgttag aagaacacga tgtggaatat gccattgatt atcgtgaaga
    18181 gaacgaagcc attttttctt tacgtcaatt tgccttaaat accacccaag atgtgattgc
    18241 gttaggtcgt gaaaaagcgg ttgcaaccct cgccttagat gaaagccgtt atgaaacaga
    18301 caataaagtc acgctgtccg gcaccagtca attcagccat aaagatgctg atgtgtttaa
    18361 ggtatttgat accgctattc gtgccgtgaa gcgggctatc ggtcgtaaac cgaatgtgtg
    18421 tgtgatttcc ggtgatgtgt gggcagcgtt aaaagaacat ccggcagtgg ttgaaaagct
    18481 caaatacagt caagtagcga ttgttacccc tgaggtgttt gccaaactga tcggcattga
    18541 gaccgtaaaa atcggtgaag cggtgtatga agaaagcggt cagctcaaag atatttggag
    18601 caaagatatt gtggtggcgt atgttgctcc tcgttcgacc ggaggcaaag gcacggttta
    18661 cgagccgtct tatggttaca cggttcgccg tcaaaaaggc ttatttgttg atacttataa
    18721 agagagtggc ggcaaaattg aagtggtacg cacgaccgat attcacaaac ctcatttagt
    18781 gggtgcggca gcaggctatt taattaaagc tgccgtataa gccacatacc atagggtgcg
    18841 tttactaacg caccattatc tcaaacacat tacatagagg aaaaaacgat ggctaaattt
    18901 attgttttac ataccccaat tttacacgat ggcaaacgct atgaggtggg ggcagaaatt
    18961 gaactcaccg ctgaacaagc tgagaacaat gcgatcaact taaaagcggt agaagctgtt
    19021 ccaaaaccac ctaaaaatgc ctcaaaacct gaagatgagc caaaacccga aggtgaacct
    19081 aagcctgaag atgcagtgac ggaagatgat gtgaagctgg ctgaagcaaa aattgcagaa
    19141 gcagagcaac caaaagggaa taaaaaataa tgtatgtgca gattgatgag ctactcacgg
    19201 cgtttagtcg caagattgtg gtgcagctca gtaatgatga accgacagcg accgagcctg
    19261 atttaaagat gcttgaaacg gcagttaaag tggcaaatga gcgaattgat gcagcgttac
    19321 gctctcgcta taccttgccg ctggctgatg tgcctacgct tattaatcag cacgcattaa
    19381 cccttgcccg ttattggctt tatgcccgcc gtcctgaaac caaaatgccg gacaccgtga
    19441 aggaaaccta ccaacaagca gtgaaagagt tggaacagat tgcaacaggc aaactgcatt
    19501 taggcattgc tgaaagcagt caaattttag aagacgatgt tttagccgat aacagtgaat
    19561 atgaagttcg ggcgaacgct cgcattgata ccagtcgtta ttaaagatta tgtcagccac
    19621 acaaccgatt ttagaagata tttgccaaca cttgcggcaa gcattgcccg agtgggaggt
    19681 gaaactcttc ccgaatgacc caagcaccta tcatctctcg cacattaacg gtgcggtgtt
    19741 gattagctat ttggcaagca aatttgagaa acctcgcact acacaagcgg tgctgcaggt
    19801 tcgccacgtt cagattgctt taacggtgct gacccgtgat ttgcataatg atgtcggggc
    19861 gttggatttg ctggataaat tgcggttatt ggttgtgggg tttaagcctc aaaactgcgg
    19921 tgagtgttgg ttgattgatg aattttttaa tggctcaagc gaagaaaccg ggctttggca
    19981 atatcagttg attttgcaaa ccgaaactca gcaggtgcaa caccaagcgg tcgaaaatct
    20041 gccaaaattt gtaaccgctc atcttcgccg tcaagaccag cctggttcgc ccggacttaa
    20101 aacttaaatc gtagggtgcg tttgctaacg caccatcaac atcacctgat tttacggtgc
    20161 gttggcaaac gcaccctaca aggagaatat tatgacgttt caccacggtt ctgaaaccga
    20221 acgagtaaac ggtggctctg tgccggtatc ggtggttgat agtgccatta tcggcattgt
    20281 cggtactgcc ccaatcggcg cagttaatga attgaccgtc tgtttaacca aaaaagattt
    20341 tgccaaattc ggcacgattt taaaccaagg cttcacctta cctgatgcct ttgatatttt
    20401 agctcgttac gcagcgggta aagtgtatgt ggtgaatgtg cttgaccctt cccgccaccg
    20461 tactaccgtg accgatgaag tcctcacact ggatcgcaat acgctgaccg ctcaaacagc
    20521 gaaaaccggc attattgcgg tgacgagagt gaaagacggt gcaaacgtgc tgaatgctga
    20581 tcggtattcg gtcgatctgc aaaccggcgt ggtgaccttt gtctctgcac cgtctgcccc
    20641 gaaaattagc tatatctatg ctgacccgag caaagtgacc gaagaggaca ttaaaggcgg
    20701 ggtggatagc ttaaccggta aacgcaaagg ttttgaacta ttgcgtgatg gttttaacct
    20761 ttacggtgcg gatgccaaaa tcttaatctg tccggaattt gataaaaccg caagctgtgc
    20821 cgctgccctt gccacccttg ccgaccaact gcacgctaag gcgtatattc aactgccgaa
    20881 agggacgagc ttatcaaaag ctattcaagg acgtggcccg gcagggacga ttaacgcctc
    20941 ggcaagcaat gagaacgtac gccatttctt cccgtatgcg ttggggtcaa gcaatactct
    21001 tgaaagcctt gcgacccacg ccgccggttt gcgtatgttg attgatgtgg agaagggcta
    21061 ctggttcagc acttccaata aagagctgaa aggggtgatc gggttggaaa ttccgctgac
    21121 ggctcgggtg gacgataagc aaagcgaaac taatctgctc aatgcggtag ggattaccac
    21181 cattttcaat agttttggca caggcttccg cttatggggc aaccgttcgt ctaacttccc
    21241 gactgtgacc catatcagca actttgaagt cgcctctcgc acaggcgata ttattgatga
    21301 aagcattcgc caagccgaat tgcagtttat tgatttaccg attgatgatg cgttgctgga
    21361 tagcttcctt gaaaccatcg acactttcct gcgtacgcag aaatcgttgg taggttattc
    21421 ggtgagctta gactatgaat atgacttggt tgatgcattc agccgtgggc aagtcccgat
    21481 tgtgtatgaa tacactccta aaattccggg tgaacgtatc agcaataaat ctgtgatgac
    21541 ccgtaaatac ttggcaaact tggtgtcgca acgataaggg gaaataaatg agtattgcaa
    21601 ttaaccaaat tgtaaacgga aatgtttaca ttaacggcaa cagccaaatg gggcgagtga
    21661 atgaggtcaa aatccccgat attgagtttg aatttatcga acacaaaggc cttggaatgc
    21721 acggtgtgat taaattacct gccggcacga atgcgattga agcagaaatc acttgggaca
    21781 gtttttatcc ggaagtgcgt gcggtaatgc ttaatccgta taaatacact cagttgcaaa
    21841 tccgctctaa cctgcaagtg tttaactcgc agggcttggc agccgaagag ccgatggtca
    21901 ccattatgaa tgtgtctgcc ggtaaaatcg gcggcacagg gcataaaaac aaagaaaatg
    21961 ccgaatttgc cgacacgtta aatgtacatt caattaaaca gaccgttgcc ggtcgtgagc
    22021 tgttatttat tgatgtgctg gcgaatatct accgtgtgaa cggggtggat gtgttgcaaa
    22081 aattccgcac caatatcggt cagtaaaatc tttaaagccg tttaaaatca atttaaacac
    22141 cgtttaagta aactcctttg tgaagttaaa caacaaccac tcacaaagga gtttttttat
    22201 ggctaacgca gctcaacaag tattaaccaa tcttcgtgta caaaccactt ataaattgca
    22261 ataccctatc gctttaccag atggtacagt tattgaaacc ttagatgtac gtcgtccaaa
    22321 aggtaaagat tttcgtttgc ttgatgaaaa agggtttgac cctgaaaaag atggcgtaaa
    22381 aattctacgc ttctatattc aacagctcac cacacttgtg ccggaagata ttgatgaact
    22441 cgatgctgcc gatattaagg gcttaaataa cctattggaa gatatgctta ttgagggaaa
    22501 gtccgacaaa taagtgaact agataccgtt tatgctgatc tcgcttggtg gtttaagttt
    22561 tcaccaagcg agcttttaga attggattta gtggatattc cgaaatgggt agaacagatg
    22621 aacaggcaaa taaaagccgg ttatgggcag attttacggt agagccaaat aaagggttcg
    22681 gtggctaaag taagtaaaat ggcgacgccc caagctagat acacaccaac ccacgccaag
    22741 attgtcaaaa tcaatccata aatgagtaca aaactaacgc cctcgcttag gccttgtata
    22801 gattgaatcg catctaacca gtagaagata ctccaaccga ctaatgctac cgctaacaac
    22861 catttagcgg tgcattctgt tcttgttaca caagcctcga aaccagccca ctcagtaatt
    22921 cgattattta atttagtcag catacaccac ctccttaaac tttccctatt ttacgctaag
    22981 gatttaacca atggcaaata atttagctat cggaatggta attggtgcaa gcctatcatc
    23041 aggttttcac ggtgcttttt caggagcaaa gaaaaagcta gaacaattag aacaggctgt
    23101 cgctaaaaat cagcaaagcc attctaaatt aggttctgag cttactgcat tgcgtagtaa
    23161 acaagctact ctctatgcag aaatgagccg agccagtagt aaaggtggtg ctgggcttgc
    23221 tcttatgcaa caggaatata aaaaaattgg caaagaaatt gccaatatta gccgagagca
    23281 acgcaaatgg agtacagaat tagaaaaatc tattgctaag caaactaaat tacgcaatgc
    23341 aatggaacgt catacacaag ctaaagaaaa ccgagacgag cttaaaggga aaataattgg
    23401 aacggtagct tctgcggcaa tgggtgtcgg cgtgatgaaa acctatatgg agcaagaaga
    23461 agctgcgaat aatcttaaaa tttcaatgct gaaagcagat ggttctttcg ggaaatttga
    23521 agagattggc aagattgctg acacattagg gacagattta ccgggaacaa aaaaagattt
    23581 ctacaagctc gcaatggcat taaagaaaca aggtgtttct gatgatgtgc tgaccggagg
    23641 ggcattaaaa acttctgccg aactgaatgt cttgcttgat atggatcagg aaagtggtgg
    23701 agagttttta gcgaagttta tggaatctca ccggctcaat gaaaatgagt taccacaagc
    23761 agccgattat ctgcaacgag caatgtttgc cggcggttta agtaaagagc agatgtatga
    23821 atcgatgaaa tactatgctc caaaactgaa ctcaatgaaa cttacagggg ctgagaatac
    23881 cgaaaaagtg ctggcgattg aagcaatggc aggtcagcaa ggcttagagg gttcaacctt
    23941 tggtacgggc ttaaatatga tgttaagccg tatgaataaa ggaccggaaa tgctcaaggc
    24001 agcagccaaa ggaatgaaag ccgaagctcg agagatgatg gaggctgtcg gagtagaatt
    24061 taatttctgg gataaaaacg gctcattcaa aggcattgat ggaatgctgg ctgaaatgac
    24121 gaaatttgaa aaaatccgca aaaaattcgg tgacaaaggt gtaggtttag ttgcagaaga
    24181 gctgtttggt attgaaggtg ggcgtcttgc tgatattttg gctatgaaag gtcaaaaagg
    24241 cttagatgaa atgctgagta aaatgcgtga acaagccagc cttcaagatc gcattaacct
    24301 taaaacaaat acattaggtg ctgccctaga atctttagga ggagcgtggg aaacctttgt
    24361 gggggatatt ggctctgtct ttgccgaaga tataaaaggg ttttcaaaag gcttgcaatc
    24421 tgcggtggaa tggcttgtgc catttgtatc aaaacataaa gaggcgatta aatttgtagg
    24481 tggtttggtt gctggacttg ttattttacg aggcgtttta caagctggtt cttttgttat
    24541 tcaaacggta actatggcaa tgaacgccct caaaattgca gcaatgacca atcctattgt
    24601 cttagtcatt ggagcaatcg cagcgggtgc ttacttgatt tatagccatt gggatagcat
    24661 tgccccttgg tttgcaaatc tttggcaaaa tgtgaccgct tacttcaatc aattttggac
    24721 ttgggtaaaa ggtgtttggt cgggcgtgac ggactgggtg tcttctgtgt ggaatggtgt
    24781 agccactttt ttcgggcagt tatggactac gattactagc ttatttagtg tagcttggac
    24841 aaatatccaa acaatatggg gaggagcaac agcttggttc tctggtttat gggatgggat
    24901 taagtctgcg gcttttggta tgttcgacag tattagccaa aaagtcagct ctgttgtagc
    24961 aagcattaag agctttttag gctttggcga tgatgtggat aaaatggggg caaaaattgg
    25021 caatgtagct acccaagtca tcagcaaaga acactcagga caactcagca aaaccgcaga
    25081 tatggcagcc aatacagggt tctctagcgg tggtttcacc gggcaaggcg gtaaatatat
    25141 ccctgccggt attgtgcata agggcgaata tgtgatgacg aaagaagcga cctctcgttt
    25201 gggtgttgga atgctggata gcttaaacta tggcggtgct atgggtttca ctcaacctgt
    25261 tttgcaaccg attttaggta agcaaaaagg cttttttggc tcactttggg acgatgtgaa
    25321 attcggggca aactttgtcg gcaatctgct tggcttaaat caaggcagcc tgaaaacgcc
    25381 tgattttaac ccaaatgcga ccaatgcaag cggtcaaaat tcgtcgattt ttagcaatta
    25441 tgaaccactc aaccgaaatg cggtaacaca gcaggaaagc tcgcaagcac cgcagatagt
    25501 cgtgaacttt aacccgacaa tcaatgtaaa cggtaatgct acgcaagagg ctcaatcgca
    25561 aattatgcag cagttgcaaa tgagtgctta tgagtttgag aaattgctca atcgtgtgct
    25621 agaccaacga agccgtagag cctattagga gtgatttatg tattttatgt taggcaatat
    25681 tgcctttgag ccggtgaatt taactgaatt tagcgagcaa cataccgccg aatttgccga
    25741 acacgctgtg ctaaaaggca aacctcgttt acaagcgatg ggcgaaaagc taaatgaact
    25801 taatttttct cttcggttgc accataccat aggcggtgta gagagccgtt atcaagcctt
    25861 gcttgaagcc aaagcgaagc aagcggcatt ggcgttaatt tggggcagtc gttataaggg
    25921 agattatgta attgtcgata tttcatcgac cacattgttc accgatggca gaggcaatgc
    25981 cctcgctcgt gaaatgcaaa ttagcctgaa agagtttgtg ggtgataatg agggtggtgt
    26041 gttgggcgag gcgttaaatt ttggtcgtgg ctcgttgctt ggctctattt tgccaagcgg
    26101 tgcggtaacc gccctgtctc aaattaaaac agcggttagc cgtggtgtgg agctttataa
    26161 cagtggcaaa cgattggtgg atgaagtgca aaataccgtg gcgattattc ggcagttgaa
    26221 aaatgacccg gcaactgcgt tggcatattt acccgctgcc ttagcgaatt tagacggggc
    26281 attgggacat tttggtaatt tgaccggctt atcggaaacc ttaggtggtt tgcaggcaaa
    26341 actaccggca gcggtggcat ttagcgagga aatcggcgag atttatcaga gtttgcaaac
    26401 aatgcgaagc agtttgggta atgcctcggc aaatagctgg gataattggt ttacaccggc
    26461 agagagtgca ttgacagagg tcacagacag ctttgaccat ctagcaaaac cggtggcaaa
    26521 aatgaccgct tggattgtgc tgcgtaccga tgaggaggca gaaaatgaca cagttgctta
    26581 aacatatcgt caaacagggt gagcgttggg ataacttgag ctatcaatac tacggcaatg
    26641 cgtttgaata tggtcgaatt attgatgcca atccgcatat cggtttttgc gaggtgttgc
    26701 cgataggggt aacaatttat atccctgtac ttaacgttaa gccaacgaat aatgaaaata
    26761 tgccaccgtg gctaaggggg cgtgatgcgt aatgtaccga agcccgattt ttcactgttt
    26821 tatgaaaaaa ccaatatcac tgccgagatt gagccacatt tggtgcaact gacctatatc
    26881 gaccatttgg aaggtcaatc ggacgaactc actgtggaat ttgaagacat tcaaggcaaa
    26941 tggatacgcc aatggttccc gactcagggg gataagctca aagcggcgat tggctatcag
    27001 ggcgaatttc tgacggacat cggtgagttt gaaattgatg aagtggaata tagttataag
    27061 ccttccacta ttaacttaaa agctctaagc accggtatca gcaaagccaa ccgtacttta
    27121 aaaccgaaag cctatgagaa tacgactctt gctcaggtgg tggcaaaggt agcagataac
    27181 ctgaaattaa aggtagtcgg taagattaag gctatcccga ttaaacggat cacccaatat
    27241 caagagcggg acgtggagtt tttggcacgc cttgcccgag agtatcatca cagctttaaa
    27301 atcgtgggca atcagctggt ctttaccgat aaaagcgaac tggggcaaag tgagccggtg
    27361 ttaatgttgg aagaacggga tactatttcc ctacgtttgc gagatcggat taaagacact
    27421 gcaaaggcag tggaaatcag cggctatgat acaagcggta aaaaagtggt gaaaaaacgc
    27481 aaaaaggcaa aagccttacg cccgaatata aaacaagcta aatcagccag tgaagatacg
    27541 ctgaaaatca tcacacgagg cgaaagtcaa gaacagattg atgcacgggg tgaggctgcg
    27601 ttggctacgc aaaatgaaga tcaggcggct ggtgatattg agcttatcgg caatcctaaa
    27661 ttggttgccg gagcaacgat tttattgcgt aactttggcg tgtttagtgg caagtatctg
    27721 attaaatcat cacgccatac gattagccgt agcggtggtt atactactca tattgaggtc
    27781 agaatgttgg agtttattgc cgatgattta atcacattag gtatggaggc tggcaatgca
    27841 aacgcataat tttggggcga cttatcaaga agggattgta tccgctgttg atccgaaaac
    27901 gcacaaagtg cggtgtaaaa tccctgcgct ggaagattta gaaactgctt ggctgtcgtt
    27961 tttgaccccg aacgccggtg gcaatcagtt ttactgtttg cccgatgtgg gcgagctggt
    28021 ggcaatgcta cttgatgcac aaggcgaagg tggctgtgtg tttggggcaa tttataacga
    28081 gcaagacccg acaccggttg ccgatagcga tatgtgggtt aagaaattca gcaatggcac
    28141 ggagatttcg cataatcgca aaaccggcga tgtggtagtg aagactaacg ggcatttaac
    28201 cgcaacggct caaggtgggg ctacgattaa tgcaaacacc gtagtcaatg gcacattgca
    28261 cgctaccggt aaaatcacct ctgacgaaga agtctctgct cctgttgtga aacaaggcac
    28321 ggtagagctt ggcacacata aacacggcgg tagccctgaa cctaataagt aattctttaa
    28381 accagtttaa aatccctttt aaagatagcc ctgtatcatc agggctatga acagacaaac
    28441 ttccattcaa ttaacccact ggcaacttgc accctcaacc gatacagttg aggtggtgca
    28501 aggtattgat gatattcatc tttgtattgt caatatcctt tcaacccaaa aaggcacgga
    28561 tattttacgc cctgaatttg gctctgacca ctttcgctac attgactacc ctgaagatgt
    28621 ggctatcccg aattttgtac gggaaattac aaccgccttg caaaaatggg aaaaacgcat
    28681 tgaggttgaa gaagtgttgg tggacggttc agctccgcat tttattttta ctgtgatgtg
    28741 gcacttaacc gatgatgttt atcgtgaaat ttaccgaaca acggtataag gataggcaat
    28801 gacagaagcg attaaaatca ttgatgacga tgtaaaaacc gtacttgccg aagcgattgc
    28861 cgattatgaa aaacgcaccg gtaaaatctt acaacctgca catattgagc gttccattat
    28921 tcaaacctac gcttaccgtg agcagttatt acgcaaaggc attaatcacg cctttttaca
    28981 aacctttccg cagtttgcga cggggattgc gttggatttg tgcggggaaa cttttggttg
    29041 ttatcggctt agagataaac ctgcccgtac tttactacgc ttttcagtaa gtggtgaaca
    29101 tacagctata gttatcccta aaggaacgca ggtggcaatt aatgacgagc tatacttttc
    29161 aacgctcaat gacgatgtta ttactccatt aattacctat gtggaaattg atgcagagtg
    29221 taatcaggtt ggtgttatcg gtaatggttg ggaatcagga agagtcagta aactaaaaac
    29281 agcactggca actaattata aagtaacagt tgaaaacatt gatattacga gcggtgggtt
    29341 gatgcaggaa gaagatgaac cttaccgtaa gcgaatttta gccgcaccgg aagcctttag
    29401 taactgtggc tctatcgctg catatgatta ccacgtccgc tctgtatccc aagatattgc
    29461 agatgtgaat atctctacgc ctaggggtgg cttggtaaga attgcggtat tgacccaaaa
    29521 agggttaccg gatacccgat tacttgatga tattaaaaaa cacgttagtg ccgaacggct
    29581 acgcccactt tgcgatatgg tcgaggttat taagcccaca gaacgccgtt atcaaattac
    29641 ggcacgttta atattgttag atggctaccg tgaggatttg gtaaaagcaa aagcccgaga
    29701 ggcattacaa ctctatttgt cagacaagac taaaaaactc ggtttagaca ttgtgccgtc
    29761 ggccatcatt tcagctttaa gagttgaggg tgtttacgat gtgaatttaa ttcagccagt
    29821 caaaactatt atcaacgaaa cagaatgggc gaactgcaca gcaatcagcg tagaagtcga
    29881 agaggagcgt agagatggct agcttgcact atgcggacat tattgtgcga gaccctaaat
    29941 ataaagcatt agcggattta agcaagcggt taaatttgct cgatacttcg caaattatga
    30001 ctacgctggt ggatttattg ggcgacgaat gtatcccatt gctggcagaa aaatggtcgg
    30061 taaccggcta tgacggctta ttggttgcag atagcgaaaa ctcaaagcga gccttaatta
    30121 aaagagcaat cgaactacat caactaaaag gcacgccttg gtcaattcgt gaagtattac
    30181 gcagactagg tttcggagag gttgagattg acgagggact gaaaaatcgg ctgtatgaaa
    30241 gcacttatgt gagcggaatc cccgaaaacg aacgctgggc gcactatgcg attaggttga
    30301 gtaacccgat taccaatgag caagctcgca atatccgtaa ggtcttacgc aattttgctc
    30361 cggctcgttg ctctcttgca gttttggatt ataaagcagc tccaattcga tataacaata
    30421 aagcaaccta caacggcaca tataaccacg gttcaagtta aggataaatt atggcaggtg
    30481 tacaagaaac cgcacagtgg gaaaaccacg tttacagaat tgaagaaaat gacccagtcc
    30541 acggaggaga aaacggtgta accaataagc caattaagca cctagcaaac cgcacgctct
    30601 atctgcgtag attgctcacc gaggcaggac aacgcattaa cccgaaaaaa atcacagcta
    30661 ccagcaaaaa tagtaatgat ttaactgggc atactcacga gattgaccac gcaagcctaa
    30721 cgcaaaaagg cattgtgcag ttaaatgcga gtatccaatc aactagcaca actgagtctg
    30781 caaccccttc agcagttaaa gcagcctatg ataaagcagc aacagcagaa caaaaagcga
    30841 cattggcaaa tgagaaagtc gaggcgatta aagtaggcgg acgaaacctc ctcattcaat
    30901 ccaacacccc acacaacggg aatgcgtact cagtcagata cgcattggct gaggctccga
    30961 aagtaggcga agagattgta gtcactctat ggggtgaact cggctctcaa cgtaccggaa
    31021 ttggcgttta caactctcaa ggtgctacgg agttggcaaa actggtcaaa attcgtgatg
    31081 gagtttatca aggtaaaggc atttggcgta agccgatgag tgagggacga gagctaacgc
    31141 ctaacgacac gcacctgaat gtgtattttt acccaaaaac cgcaacagac aacaaccgta
    31201 ttgagcgaat ccagcttgag cgaggctcaa tcggtacaga ttggacgcca aacgaggcag
    31261 acttaaaggc agagattagt gcaatccgca ctaaactaat ccctgtacgg ggtggcaatg
    31321 ttgctacaac cttaaatgcg gctaagcggt cggattggtt tagagaaatg caaatccctt
    31381 atcaaagtgg ttgggggtat tacacccaag catttcataa ctcagggacg caacacaact
    31441 acagcaatct accgctgaca ggtcgttatt attttatcgc cgaactctat cataactctg
    31501 gttattctca cttgcgtatc acctatccga gattaaaacg tacctttgag agtgctatca
    31561 accttaataa tgaggatttg attctagatt ggcgtgaggt ggtgttttta aaagatggcg
    31621 tgtatcaagg cactttcaaa acaacaagca cactagagtc tgcttatcgc ataagagctg
    31681 ccagaaatga cgaacgcaat cagccatacc tgcaagtggt cgatatgggc tatgaccttg
    31741 ccaatccccc ggtaggaaaa aacaaaatta ttggcagtgt tgattattac gttaaaaacg
    31801 gcacaagcga gtcttccaaa gcgacgatga tggcagcggc aatgcctgac aagaacgtat
    31861 tttgggaagt agcattgtgg aatgcagcac agcaacggaa tgtgttgttt aaggggtata
    31921 gcaagactaa caatttgagt attggtaaaa ccaccgacaa tgagcgagac cgagtacaag
    31981 tcaatggcac aatccaagcc accgcaccgg ctgataacgc caataacgac caagtgccga
    32041 ctacggcttg ggtgcgtaag atggcaaaga ttttagctga tggcaaggtg agtaaagccg
    32101 gtgacacaat gactgggcat ttattcatca agaatgggga atactctgcg gtacatacct
    32161 ataacacaag tggttggttc gcaaaatggg aggcggcccc attatctgct tcgcactttg
    32221 ctgccattgt atatgccaac gacagagaga cagttatcaa tcgggtgtta attcccaaga
    32281 agaatggcac agtcgcttta attaatgata ttgccgatac tgttagagcc gctgtgagtc
    32341 gtagtgataa atcccgtagt agaacttttc ctctgcaaac ggggaaaaac tatacaacca
    32401 cagggagcgt tacgatttat ccagatggcc gaattgtgca gattttccac ttaaaaaata
    32461 ttaaagcggc gtggtttgat tatgaggcaa gtgcggtagg agataggcat agagttgtca
    32521 atatccctct ttggactgtg atgccaaata aaatttttga tgtcgatgtt aaaactgttc
    32581 gcccctcaaa taatgcctca acttactaca tagaagcggc tgaatggctg agtgcgtggc
    32641 agatttacgg taatgacacg aacaaatcaa gtgtcaatat taatctatct cgattcagag
    32701 gtggaaagga tgaagatatg gacttgtatg taacagttga gggatattaa atggcatatt
    32761 ttgtgaatgt gattgatgag caaggcaatt atgagctaat tgatgatgag tttattgggc
    32821 tgtatccgga tttggatttt aacacattac ccaaactcac ggataagcaa tatcagacct
    32881 accttgccaa agcaaacggc aaagagcgat ttgtaaatgg cgaatttgtg tatgagcaaa
    32941 ttaaggtgga tatgcaagcg gtcatttccg ctgaaaaatc tgcaaagtta gcagagatta
    33001 accaaaaagc acaagccttt atcaatgatt tagccaaata caacgaaacg cctcagtttg
    33061 agcgtgacac ttggcttgag caagcgaaag aggcaaaagc gtgggtggct gacccaaccg
    33121 tacaaacgcc aacccttgcg ttaattgcgc aaatgcgagg cataccgctc gacacgctac
    33181 gccaaaaagc ctacgaaaaa gcgatggcgt atcaaacggt ggctgctatt gtagcagggc
    33241 aacggcaagg atacgaagac cgcctagagc aagcggaaac cttagagcag attcaggcga
    33301 ttaagccgat gtatcaatta ccgcaaggag caaacaatga gcaaactgac taaattaaaa
    33361 tcgtggagct accacgtctt aattgcaata gatcaactct ttaacgctct caccggtgga
    33421 gcagcggacg aaacattttc tagccgttgc taccgtggtg cagtgcttgc ggaaaatccg
    33481 aaaaaacgtt ggcgtttttg gcactctttt gtgaattgct tatttttaga cccaaagcac
    33541 tgctacgccg cttataaagc ggaggtacac cgcaagcagt atccgaaggc atttagactt
    33601 ggggggattt aatgaaaaag caaaacttaa aattagtgcg gggcgatgat gtgagtttta
    33661 gattcagcat taaagacagc accggacaac ctcttgcgtt aaaggatttg cggtttgatt
    33721 tgcacttagt cagctatcaa ggtgaggtgc tgattgctct ctctactgat gatggcagta
    33781 ttgagacagc agaggctggt cagatggtgt tacattttag tcaccagcaa actgctcgag
    33841 ctgaatggac aagtgccaat tatgacttgc aactcactac cgcagagggt aagagaaaaa
    33901 cgattatgta tggcgttgtg caactcacgc acgactatac aagagtctag gaggtggaga
    33961 tgacctctat cattgaacta gacctgactg atgacctcat cattgaggtg cagttagata
    34021 gcacaatcat taccggcgat agctttttag ccaacctgcc ggatttactc caaatttaca
    34081 accaagcaaa gtcagatagc agtaaggagc ttaacaatga ctaaacacaa aaaccacgaa
    34141 aaccacccga ttgctataac attctaccaa cttggcaaag atgtcggcga cattaaccgc
    34201 cggctagcgg ttattgagca acgtgagcaa tcagcacagc caagccaacc acaagctgag
    34261 gcggttacaa tgccacagca agatgctgtt gccattaata acatcaatgc cgttttggag
    34321 gcggtcgaaa aatacaaaac ttttgaaaaa tacaacactc agtggcaaga gcgttttgaa
    34381 aaattcctgt ctcgtaaccc gaatgattac gagttaagtg aagagcaacg ccaaaaactt
    34441 taccacacga tgtgccagca tttgtggcag gtgaacttta ctgaaatcaa tagtaaacag
    34501 tatgaattac cgatcccgca acaattccag ggtaagtttg gctatattgt caaaacctcg
    34561 ggcggcagca cagaaattag ttttgagttg ctatctgaaa ctcacagcac ttatctttat
    34621 ccggatagct atattcccga gggcggtggc gatgtaatgc tcaagccggc ttatatttat
    34681 ttagtgattc cggacttagt ggcaatgcgt gagccggagg tggtgggggt ttcaccgctg
    34741 aaactgaaca ttctgcagaa acacctgctg acacctcaga aactacagga gcagaagccc
    34801 ttgaacacga aggcaaactg attgatggcg tatggcattt tgagcgagag ccggtaaatc
    34861 caccgagaga tcagaattat tatgtggcag gtaacctgtt ctacaacggc ataccggatt
    34921 gataaattga tgtttcagta aacctaatta ggggggaatc cccctttttt attattataa
    34981 ggaaagaaaa tgaataaatc tttagtagcg ttagctgttg cagcgatggc atcgaaagca
    35041 caaactaaac agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcatt
    35101 gtgagataga gaaagtattt aaacaagctc ctttaccctt ttcagggcaa aaacggatgt
    35161 ttttatccca tttcaaacag gtgttaaatg caaatattga agcagacggg aaagattgga
    35221 ctattataga tgtttttggt gggagtgggt tgcttgcaca taccgcaaag cgtgagaaac
    35281 cgttagcaag agtgatttat aatgattttg ataattacgc cgaacggcta aaccatatca
    35341 aagagacaaa tcaacttcgc caagaaatct accaaattgt tgatgaaatt ataccaaaaa
    35401 ataagagaat tagcaatgaa attaaagcta aaatcatcaa taaaatcaat gattttgagg
    35461 ggtttaaaga cctcaaatgc ttaagttctt ggttattgtt tagcggtgag caagttgcaa
    35521 ctttagatga gttatttaag cacgattttt ggcactgtgt gcggcaaagt gactatcctg
    35581 aagcaacggg ttatcttgat gatattgagg tggttagtga gtcctttcat caattattgc
    35641 cgagatttca cgacaaagag aaagtattat tgattattga ttcttgaccc accttatctt
    35701 tgcacaagac aggaaagcta taagcaggaa aattactttg atttaattga tttcttacgg
    35761 ttgatagacc ttactaaacc accttatatc ttctttagct caaccaaaag cgagtttatt
    35821 cgctttattc actatatggt tcaaaacaga aaagaaaact ggcaagcgtt tgagggagcg
    35881 gaaagaatag tggttaatgc ctcggcaagt tataacggca aatatgagga taatatggtg
    35941 tataagttct aaaaatttaa acgccctttg atagtgattt aaagggcgtt aaaaaaccat
    36001 taaaattaag aaagtaaagc tcctgttttc tttcgtagtt ttcgtggttg cgtttcgcag
    36061 ttttgttggc tcgctacact gacggctcaa aagcattgcg ttttgaccaa gtggcgtttg
    36121 cggcgtttga gttatatatc ttaaaacgcc cgggagcgga agccacttac tcatcagcag
    36181 aacaagccga agccaaagcc tattttgagc agatgagtga cgctgatatt gcaaaattaa
    36241 ccaaaaatat cattgccggt ttgccggggt ctgaggaagg ctatacgctc gaagaattcc
    36301 aagcacagct tgaccgctat caagggctct cggctgaaaa attccgtacc catttagcct
    36361 atttcttaaa tgagattgtg ccggttgcac aagaggtggg cattcgtatg gcgattcacc
    36421 ctgacgatcc gcctcgcccg attttaggct tgccacgcat tgtttcaacc atagaagata
    36481 tgcaatggtt tgtggaaact caaccgcttg cagccaatgg cttcacgttc tgtaccggtt
    36541 catacggcgt attagccgag aatgatttgg tcaaaatggc agagcagttt gcagatcgca
    36601 tttattttgc tcacttacga gctacccaac gtgaagaaaa tccacaaagt ttccacgaag
    36661 cggatcatct tgccggtgat gtcgatatgt ttggcgtggt gaaagcatta cttaccgaag
    36721 agtatcgccg caaggcaaat ggcgatcacc gcttaattcc aatgcgtccg gatcacggcc
    36781 atcaaatgct cgatgatctg aagaaaaaaa ccaacccagg ctattctgcg attggtcgtt
    36841 taagaggatt agcggagttc cgtggattgg agttggcact taagaaagtc tattttaacg
    36901 attagcctta tttattataa tgccctctac tgtagagggc attttatagt ttgatatgtt
    36961 caaaaaatat ttcggcgaaa taatcctttt tctcgttacc tttattgctg cagcggggtg
    37021 gtttttctct aaacacgctt tagttggatt accgcctatt ggctttatgg gagggcgttt
    37081 tatattagcc tctttgattc ttctgccttt ttcttaccga gagctgtatc gtttagataa
    37141 ggttcaagtt aaatattcgg tgattaccgg tcttacttac ggaatttata ctattttttg
    37201 ggtattgggg ctggctttta gtacagtgtt tggtgaaggg gcttttttgg tgagccttgc
    37261 gatgctgatt gctcctttgc tctcttggtt gatattcaaa catacgccac cgaagatttt
    37321 ttggttagcc ttacccattg cattaagtgg gctttacttt ctttctgcgg agaaaggcat
    37381 ctttcatttt tccttaggca gtacgatttt tctggtgtca tcagtgtttg gggcgttata
    37441 ttttgtgtta aataatcaat acgccaaaca agtctcattg tttccattaa ttactatcca
    37501 attggcgata gtcggtgcgg tctgtagctt gtattcctat tttatggaaa gttggcattt
    37561 cccgattccc accgaagtgt ggctctggtt tgccgcaagt gtattgattg cgacaaattt
    37621 acgtttttta atgcaaacac tggggcaaaa atattgccat attggtactt ctgcactcat
    37681 tatgttactt gagccggttt ggacattgtt attgagcgtg atgttattgg gggaacaact
    37741 tagtgcgaca aaatggctag gttgcagcct gattttgata gcattgatta tttatcgact
    37801 ccctattcta cgactcaaaa aataggtaaa acaaaagcaa atatgccata gtattggaag
    37861 cagttaggca ttttagagta agtaacaagc ggtcattttt gcaaaaaatc ttgcaaaaat
    37921 gaccgctttc tttcttttat ccgttcaatc tatgttaaaa ttctacgttt ttataagatg
    37981 agagagagaa acgtggaaca gaatttagtc gaatttttaa ccaaaacctt agatgattta
    38041 aaggcacaag atattttagc cattgatgtg aaagggaaat ctagcattac tgatacgatg
    38101 attttagcca ccggtacatc gagccgtcac gttgcttcaa cggcagagcg tttaattacg
    38161 gaagcaaaac aggctgggtt cgaggtattt ggagatgaag gtaaagcagt tgccgattgg
    38221 atcgtggtcg attttgggaa ggcaatggtt cacttgttgc aatccgatag ccgtgagatg
    38281 taccaattag agaaactttg ggcgtagcag ttcaataagg aacgacaagc ggtgattttt
    38341 gcaacatttt ttgcaaatta aaccgcttgt aagtgaaaga gagatgaaaa ttcaattaat
    38401 tgcggttggc actaaaatgc cggcgtgggt aacgacaggg tttgaagagt atcaacgccg
    38461 ttttccgaaa gagatgccgt ttgagttggt ggaaattccg gcaggaaaac ggggcaagaa
    38521 tgctgatact aaacgcattc ttgagcttga aggcaaagca atgttggcgg cagcgggcaa
    38581 ggcaaaaatc gtgactttgg atattccggg caaagcgtgg acaaccgagc agttagccac
    38641 tcagttagag ggctggaaaa acgatgggcg agatgtagcg ttattgattg gcggcccgga
    38701 aggattatca ccggaatgca aagccgctgc cgagcagagt tggtcgttgt cgcctttaac
    38761 cttacctcac ccactggtgc gggtggtggt ggcggaaagt ttgtatcggg cgtggtcggt
    38821 taccattaat cacccttatc atcgagagta gtgagtcatt ttagatagtg ttatatgttt
    38881 ggtaaattag caaaattcac agcttcaaac cagcgagaaa aggtgcgaga cgggcaggca
    38941 gaaagcaatc tgtatgcccg ccgtgcctta gttgcgtttc tgggggtgtt ggcgttaagt
    39001 ggtgttttat taaccaactt gtatcacttg caagtggtga attatgagga ctaccaaacc
    39061 cgttcaaacg gtaaccgcat taaattgttg cctgtgccac cggctcgagg cttaatttat
    39121 gaccgtaacg gtaaagtatt ggcggaaaat ttaacctatt tcgggctgtt tattgtgcct
    39181 gaaaagacgg aaaacattga gcagacttta accgagttga aggatattgt tgggctgacg
    39241 gacgaagata tcgagaatta tcataaagag aaaaaacgca gttctcgcta taccccaatt
    39301 atgctcaaag gcaatttgaa tgaggctcag atggctcgtt ttgcggtgaa ccaataccgt
    39361 tttccaagtt tagatgtgca ggcgtattat aagcggaatt atccttacgg cgagctttta
    39421 acccatatta tcggttatgt ggcgaaaatt aacgaaaacg ataagaaaaa gctgcaagaa
    39481 gccgggaaat tcggcaatta tgccggttcg cacgatatgg ggaaattggg gattgaaaaa
    39541 ttctatgaag atcagctcca cggtgtcacc ggttttgaag aggtagaaat taataaccga
    39601 gggaaagtaa tccgtaaatt gcgtgaccaa gcaggggttg ccggtagcag tattcgcttg
    39661 agtattgatg tggaattaca gcaatatgtg atgtcgttaa ttgctaagca taaaggggcg
    39721 gtggtggtgc ttgaccctcg tgatagcagt attttagcga tggtctcaaa cccaagttat
    39781 gacaataatt tatttgtggg cggtatttca gggcaggatt ataaagcatt attggacgaa
    39841 ccaacccgac cactttatag ccgtactaca caaggcactt atccaccggc ttcaactatt
    39901 aagccattta tggcggtggc aggtttggaa gagggaatga ttaccccttc taccaccatt
    39961 tcagaccccg gctattggat tttgcccggc actacacaac gttatcgaga ttggaaacgt
    40021 agcggacacg gtgcaactaa tgtgaataaa gcaattaccg aatcgtctga tacctttttc
    40081 tatcaattag cctataaaat ggggattgat aaaatgtcgg attggatgaa aaaattcggt
    40141 ttcggagtga aaaccggtat cgatattttt gaggaatccg caggggtaat gccaacccgt
    40201 gaatggaaac aaaaacgcta taaaaaacct tgggtgcagg gcgatactat tccggttggg
    40261 attgggcagg gctactggat ttcgaccccg ttacagttgg cgaaagccac ggcggtgtta
    40321 atcaacaacg ggcgggtgaa tacaccgcat ttaatgcttg aagtgcaaag cagtaattcg
    40381 gttacgccgt atcaagaccc attgttgtat gaagatatta aaggcgtgcc ggatgtctat
    40441 tggaatttag caaaacaggg aatgtataac gtaaaccacg ccgcaaacgg tacggcacga
    40501 aaagtgtttg ccggtgcatt ttatcattca gcagggaaaa ccggtacggc tcaggtgttt
    40561 aacttaaacg gtaaaaatta cgataaaaat gcgattaaaa aagagttgca cgaccacgct
    40621 tggtttatcg gctatgctcc ttatgaacaa cctaaaatag tggtggcatt aattttagaa
    40681 aatgcaggcg gtggtggtag tgccgcggct cctgttgctc gtcagattat ggattatgct
    40741 ttgagaaaag gcattggtga acagccggat tcgcaaaatt ctgagcaaaa taaaccgctt
    40801 gtcacagagg aacatcatga atagtggctt taaaaaactt ttctggaaaa ttttttcact
    40861 cgatctcctt ttattatcag gattattagc tattaccggt tatggtttat tagtactata
    40921 tagcgcaagc ggtgcaaatg agcggatgtt taccagtaga ctgattcaag tttcgctagg
    40981 gcttgggcta atgttgataa tggcaatggt acctcctcgc ttttatcaaa aagtttcgcc
    41041 ttatctgtat attttctgtc tgatattatt gattttggtg gatttggtcg gcgaaaccag
    41101 taaaggagcg caacgttggt tgaatttagg atttgttcgc tttcagcctt ctgagattgc
    41161 caagctcgct gtgccactga tggtagccac ttatttaggt aagcggccgc ttcctccgag
    41221 ttttaaagat acttttatcg ccttagccat tattattgtg ccaaccttat tggtggcaat
    41281 tcagcccgat ttgggaacat ctattttagt gtgttctgcc ggtatttttg ttttattttt
    41341 ggcagggcta agttggaaat taattggcgc aggtgtggtg tttttagccg gttttatccc
    41401 gataatgtgg tttttcttaa tgcacgatta tcaaaaaacc cgggtgatga ccttaattga
    41461 tcctaataaa gacccgttgg gtgccggcta tcatattatt caatccaaaa ttgcgatagg
    41521 ctctggtggc attaatggaa aaggctggat ggaaggaacg caatcccagc ttgaattttt
    41581 acctgaaccg cataccgatt ttatttttgc agtgttaagc gaagagcatg gtatgatagg
    41641 tgtgctgatt ttattagcga tttatttgtt tattattgcc cgaggtttag tgattggcac
    41701 aaaatcggat tctgctttcg ggcgtatatt atcaggtggt acagcccttc tattttttgt
    41761 ttacgttttt gtaaatattg gtatggtgag tggtatttta cccgtagtcg gtgtaccatt
    41821 accgcttttc agttacggcg gaacctccta tgtgacgctg atggcggcat ttggtttgat
    41881 gatgtcaacc tatgttcacc gtaagcgtgt aggtagtaat aatccttatg ataaactgaa
    41941 ataaattaaa cttttgcttt tttgcggtat caaaaagcag tgaaacgatc atcgttacaa
    42001 acaataacga catccacata gaggaaaaaa cttatatgag attaggtaaa attgtaaccc
    42061 tgttgttagc tggatttctg acatttagtt cattaaattc tttggctgcg acaaagaata
    42121 caaaagctaa atcgagtatt ttagccaaga agcaagcaac ttctaaagca ataaaaaaag
    42181 taggtatttc taaagttaag aaaaaagaag tagtggctaa agctacaaaa aagaaaacaa
    42241 tttctactgt tacaactaag ccgattaaat ctacaaaaaa gctggctcgc aaggttgtca
    42301 agaaaacggt aaccgctaag aaaaaattgg taaaaaagca gcataagcca ctggtcaaaa
    42361 aacatttcca gactggtgtt gccagctatt atgcaaatta ctttaatggt cgccgaaccg
    42421 ctaatgggga gactttcaat aacgcaaaaa tgacggctgc acatcgaact ttaccatttg
    42481 gtactttaat tgaagtgacg aatttacgaa atggtcgttc tgtggtggtg cgtgtaaatg
    42541 atcgcggacc ttatgctcac gcacgggtct tggatttatc atcagccgca gcgaaaaaaa
    42601 tcggtatgca ccattcgggg acggcaagag tgaaaattgc gattgttgat aagtcaaaat
    42661 tgggatcgac taatcagttt tatgtaatga attaatttaa gagggaatat gaaaaaaaca
    42721 ttagtgaaag cgatgagcgt ggtaggtttt gcggtttcaa gcattgccta tgcggattta
    42781 aacactaact tcaatttatc ggcgccccag atcaacgcac aaacctatat tttgatggat
    42841 tacaactccg gtgaagtttt agtgagccta aatccggatc aacgtcaata tcctgcatca
    42901 ttgaccaaaa tgatgactag ctacgtagtt ggtgaagccc taaaatcggg aaaagtgcaa
    42961 aacagtgata tggtgatagt caccgaaaat tcgtgggcgc aaaaattccc cggctcttca
    43021 ttaatgtttt tagatttaaa cagcaaagtt tcagtaggtg agttgatgaa agggctgatt
    43081 atcgtctcgg gtaatgatgc ctctgtggcg cttgctgaac atgtttcagg ctcacaagcg
    43141 gcgttcatta atgaaatgaa caaatatgcc caacagtttg gcttaaagaa tactcacttt
    43201 accactgttc acggtttaga tgaccctgag caatattctt ctgctcgtga tatggcgatt
    43261 attggttcgc atattattcg tgatcagccg gaagagtata aaatttatgc ggaaaaagag
    43321 ttccaatata acatcaaaaa accacaacca aaccgcaacg gattattgtg ggataaaacc
    43381 attcaagttg atggtatgaa aacagggcat actgataaag ccggctataa cttagtcgca
    43441 tcagcaatta acccgaatac acgtttaatt tctgtagtga tgggcgtgcc aacttataaa
    43501 gggcgtgaag tggaaagtaa gaaattactg caatggggct ttgcgaactt tgaaaccatt
    43561 aaatctattc cggcagctca atcggtggca gagcaaagtg tctattacgg tgaagtcaat
    43621 aaagtacaat taggctcggt gcaagatagc tttgtgacta tcccgaaagg tcgctcggca
    43681 gatttaaaag cccgttatga gttagagaag aaaaacctcg aagctccttt agcaaaaggg
    43741 caggtagtgg gtaaaatgat ctaccaactt gacggcaaag atgttgcaag cactaactta
    43801 caagtcttac aagatgtacc ggaagccggt attttcggca aagcgtggga ttggattgcc
    43861 cttactgtga agagcttgtt cgattaatct tgttatttgc ctttttatcc ccatctaggg
    43921 agcaatgcaa gcggtgtgat tttgcaaaaa atttgcaaaa tttcaccgct taccgtttta
    43981 gatatgaatg tataaaaagt gtagtggcga aaaatttttc gccccccgaa gaaagaatag
    44041 aataaggatc aaaaatgtct caacccaaag cgataaactt acaagattta cctcaagcca
    44101 aattaaaaga tctgctagag tttccgtgtc atttcacgtt caaagtggtg ggagcaaacc
    44161 gagaagattt ggttgatgat gtggtagtgg tcacgcaaaa atatgccaaa ggcgattaca
    44221 atccacgtca gcaaaaaagc tcaaaaggta cctataattc cgtttcgatt gatattgtgg
    44281 cggaaaatat tgagcaagta gaaactctct acacggaact tgccaaaatt aatggcgtaa
    44341 gaatggtatt ataatgcgag gggcgaatga cattcgccct caatttttca ataaagcgat
    44401 gttggaaaat agaaaatgaa attaataatt cgccaactag gcattcagcc ttatgaagaa
    44461 atttggcacc aaatgcaatc tttcacagat agccgtgatg agaataccga tgatgagatc
    44521 tggctggttc agcacccggc tgtgtttacg caaggatcgg caggcaaacc ggagcatttg
    44581 ttaaatccaa ccaatattcc ggtggtgcaa agcgaccgtg gcggtcaaat tacttaccac
    44641 ggcgaggggc agcaaattat gtatgtgctg attgatatca aacggctgaa atccttgggt
    44701 aaagaagtgt cggttcgaga tttagtgact gcccttgagc aaaccgtggt acaaacgttg
    44761 gcagaatatg gcatagaaag ttatccaaaa gccgatgcac ccggggtgta tgtggacggc
    44821 aagaaaatct gctcacttgg tttacgaatt cgaaaaggtt gctctttcca cggtttggca
    44881 ttaaatatca atatggactt aacgcctttt caaaacatca atccgtgcgg ttatgcaggg
    44941 ctggaaatgt gccaattaag tgaactggtt catcgccctg atttgcgttg cgaagaggtt
    45001 gctccaaaat tagtggctca tttcagcaca attttaggct ataataacca acaaattatt
    45061 aacaattagg ataaaacaca gtaatggcta catcgacagc tcaaacgacg gcaactgcta
    45121 cagtgaaaaa aatgagccct ttcaaaatgg aaaaaggggt gaaatatcgt gatgccgcca
    45181 aaacctctgt gattcaggtg cgtaatatcg acccggatca agaactctta aaaaaaccgg
    45241 agtggatgaa aatcaaactg ccggcaaatt cggcaaaaat tgatagcatt aaaaacggta
    45301 tgcgtcgcca cggcttgcac tcggtatgcg aggaagcctc ttgcccgaat ttacacgaat
    45361 gttttaacca cggtactgca acctttatga ttatgggggc aatctgtacc cgtcgttgcc
    45421 cgttctgtga tgtggcacac ggcaaaccgc ttccgcttga cccggacgaa cctcgcaaag
    45481 tggcagaaac ggtgcaagat atgaaactca aatatgtggt gattacctca gtggatcgtg
    45541 atgatttgcc cgaccgtggt gcggctcatt tctctgcgac cgtgcgtgaa atcaaagcct
    45601 taaatccgca ttgtaaggtt gaaattttag tgcctgattt ccgtggacgt gtggagcaag
    45661 cggtggcaat tctcaaagaa aatccacctg atgtctttaa ccacaaccta gaaaatgtgc
    45721 cacgtctcta tcgtgaagtt cgtccgggag cggattacaa atggtcgttg gaattattga
    45781 aaatcttcaa gcaagagttc ccgcatattc cgaccaaatc cggcttaatg gtaggcttag
    45841 gtgaaaccaa cgaagaaatc ttggaagtaa tgcaagattt acgagaccac ggcgtgacga
    45901 tgctcaccat cgggcaatac ttacaaccaa gccgccacca cttaaaagtg gaacgttatg
    45961 tgccaccggc agagtttgat atgttccgtg aggaagctga aaaaatgggc tttgaacacg
    46021 cagcctgcgg accgttcgtg cgttcttctt accacgcgga tttacaagcg aaaggcgaat
    46081 tggtgaaata aaatcgataa gggcgaatat tatttgccct ttgtttttgt ggtttgcaaa
    46141 gttttagcaa aattaaaccg cttgtaatct cttctaattt actcttctat agataatttc
    46201 gttgttgcga attattttca ttgactattt gttatagaaa gttacaattc aactttccat
    46261 ttctttttgg agttccaatg aaaaaattac tattaaacag cgtatttgct gccacattgc
    46321 ttgcttttgg tgcaactgcc aatgccgaaa ttaaaaccat cactgatgta ttagggcgtg
    46381 aggtcaaagt tgatgtgcct gctaaacgtg ttgcactgac tttctattac cctgactata
    46441 ttgcggtaac cggtgttgaa aatttcgata aggtagtagg gatttcacga gagttttggg
    46501 aaaagttcaa cccaggcagt tgggcattat ttgcagaaaa aatgccaaat ctaaaaaaca
    46561 ttgccgatct tggctatgtg aatagtggta ctttttcaac agaaaaaacc atcgcattaa
    46621 aaccagatgt gttagtgcta cctgaaattc aatatcaagc gttagctagt gaaattccac
    46681 gcattgagca agctggcatt cctgttgtag tagtagattt caacaagcaa actgttgaaa
    46741 accatacaaa aagcgtgaga gttttcggtc agcttacagg cactgaagag agagcggaga
    46801 aaattgccaa agagtatgaa gagggcattg ctgatattca gagctgtatt gataatgcaa
    46861 aagtaagtaa gccgaaaatc tatgctgaat ttggtaataa aggcccgaaa gagcatagtt
    46921 ttacctttgg taaaaatatg tggggagcga ttgccgaaac ggtgcgaggc gataacatta
    46981 gtgccccgtt tgtagaaaac tgggggcaga ttaaccctga gcaggtgtta gtttctaaac
    47041 ctgatgtgat tatgatttca ggtacggaac taggcaacga cactaaccct gagattatgt
    47101 cgatggggat taatattgaa gaagccgatg ctcaaaaacg cttaaaaggc tttattgagc
    47161 gtacaggttg gaaagagtta cctgcggtaa aatcagggcg tgtttatggt ttatatcata
    47221 cagcttctcg ctcaatttca gatttagcga gtgctcaatt tatggcaaaa gcactttatc
    47281 ctgaattgtt taaagatatc gatcctgaaa aaacgtattt ggatttccac aacaactact
    47341 taccaattac gccaaaaggc acattcttta tgcaactgaa ataaaaacaa caagcgatca
    47401 ttttgcagat ttattttgca aaatgaccgc ttgtattcgc ttttactatt tgcggttcaa
    47461 acagcaatca atatttaaac atttgcgaag cgggcggata atcggcgagc cgtttccatc
    47521 atataaaatc tcaatattga cattatagag tctctgaata atatcgcatt ccaacacatc
    47581 acaagctctg ccttgtgcgt gaattttccc ctcgcttaat agcatcacac ttgagccgca
    47641 aggcttaaat cgtgcagcac cataattgta attaggttat tcgctcgagt gtaggcattc
    47701 acatattcaa gtaagttgat ttgatgatac atatccaacg cactgacagg ctcatctagc
    47761 agcagaatgt gtggtttacg tagcaatact tgtgcgaaca ttaccatttg ccgttgcccg
    47821 ccacttagcc gcataatatc ttgatgagct agatgtgaaa taccgagttt atccataata
    47881 tcaacggctt cattgagtaa ttcatcgcta atatacatat tcaggctatc aagttgccct
    47941 aataaaataa cctctaaggc actgagtgag gcctctacct gtgtgtcttg tggcatatag
    48001 ccaatttctt tacgccaact atgcaagtgg cttgaggtta atttattacc gtcaaaatca
    48061 attgtgcctt gatgagcaat ttccccaaat agagttttaa ggagagaaga tttacccgca
    48121 ccatttgggc caagtaaagt atagatcttg ccttgttcaa aatgtagatt gattttatca
    48181 gccaccacta agtttccacg cttaatagtt acatcgttta agttgagcat agaaaatcct
    48241 tatcgtttcg ccaatacaat ccagaaaaag aacggcacac cgactaatgc cgtaataata
    48301 ccgaccggaa ataatgcgcc cggcacaagg ctttttgata gcacggatga catcgataaa
    48361 aatgccgcac ccactaacat tgaaccgggc aggaaaaagc gttggtcttc gcctagcaac
    48421 attcgggcaa tatgcggggc aactaagcca ataaagccga taatgcctac aaagctaatg
    48481 caggtggctg tcattacaga cacaatcagc aatgttttca ttcgtaacca agttaagtta
    48541 atgcctaagc tcaatgctcg agcttcgccc aaacgcaagg cagttaattt ccacgcatct
    48601 ttgaataata ataaaataca gactgtagtt acgccaaagg caattgagat agtctgccaa
    48661 gtagctttag ttaaattacc gaatagccaa aacagaattt gttgggatac ctcaggtgca
    48721 gaaataaatt gcaccaatga cagtaaagac tgaaataaaa acaataaggc aattcctacc
    48781 agcactaata ttgccgagct aaaacgtcct aaagaggaaa aggcaaataa aatggcggaa
    48841 gaaaatagtg tcatcacaaa agccccgaca ggtacagaaa tttcggtggg taaaccaaat
    48901 ccaccaaagg caatcacaat cgaagcacca aagccggctg cagctgctaa acccaatgta
    48961 taagggcttg ccattggatt attaagcaaa gtttgaattt cagctccgcc aacaccaagt
    49021 gctgctccaa ccaccaatgc cattattgcc attggtaagc gtagctcata gacaatcact
    49081 ttggtggttt cttcaatttc gcctaattgg aataaggctt tccaaacttc attaaacgga
    49141 agcagggaag ggcctgtcat aatatcgaaa atgaggctga gtaaacaaat gagtaagaaa
    49201 aagagtaata aaaaactgcg ttcttttcaa tagttcggtg ctttttagct atttgttggg
    49261 gagagagcgt tgtttgcata aaaatgtaat gtttgagaat tattatcaga caggataaga
    49321 gaaaagatcg ataaattcaa gaatatccaa gataccgact aaagtattca actaagttct
    49381 tgagtagccc tgtcttttac agtaaaaaac tcctgaatag cggcttcttc taaaagagta
    49441 taattctgcc aaatttcggt tacagcattt cttaaaatct cacctttctt aactcttgat
    49501 gacattccca agaatacctg ttctaagaaa tctaaatcgg cataatgagt taatgctttt
    49561 cgtgactgta accagttaaa catcggcaca aattgttcag gaaaaatcgt gcgttgttgt
    49621 tcgatttgct gaaagatctg tgcttgtacc tcatttaaat ctttagcaaa taaccgttgg
    49681 aaatgtttag cgagaaaatg gtcgatcata atatccgaca caatgccttt ataacgcccg
    49741 aatgtgcctt ggagtaattg ggttgtgagg ctgtccggtc ggtccgaaat cttatcaatc
    49801 gagcggtgta acaccacacc gctttttaag ttatccgcta aattgagatg cggaattaaa
    49861 cctttataga aatcaccggc aaagttgcca tatagggtct gttgcttggt ttgggtgtca
    49921 atttcaagtg aaatcagcga atgggtaaga aaattcattt atgctccaag tgcagtttgg
    49981 tgatactcaa acccaaactc gttggtttct cctttcggta caaactcaaa taaatgcgta
    50041 atgcaatttg gagcatcgct gtcttggtgc gaaacaaaaa gcagttgcgt ttggctgtta
    50101 gtcactaatt gttcaatgaa ctgtttgact aatttgcggt taatgccgtc taaaccttgt
    50161 aacggttcgt ctagaatcag aattgatggg tgtttcacca ttgctcgggt aatcaaaagt
    50221 aagcgttgtt gcccccacga gagagagcga aacggctttt tggcaacatt gcttaaattg
    50281 aggcgttcca accattccat tgcttttaat tgcaaggcat tcggcacttg ttgatacacg
    50341 ccgatgctgt caaaaaagcc agaaagaatg acctccattg cggagcaatt tacccgataa
    50401 tccatatgca actggctgct gacatagccg atatttttct taatatccca aatggtttcg
    50461 ccgcttcccc gttgtttgcc aaatagtcgg actttattgg cataagattg tgggtgatcg
    50521 ccggtgataa tcgaaagcaa ggtcgatttc ccagctccat tcgggccttt aatccaccaa
    50581 tgttgttttg gctcaaccgt ccaactgagg ttgtctaaaa ttttcttttc gccgtattgg
    50641 atagtcacct tttccagctc aaacggattg atgttttcgg gcagactgtt cagtggagcg
    50701 gcactttcag gcaaaggaac gttcacattc tgttctgcaa attttagctg agaatagacc
    50761 gcttgttgtt caatttctgc tcgctctcct tgcagaatta atgataaatt atctaataac
    50821 gcaatatgat tggcagcatc aggaatatcg ttaaaacgat ttacaatcag cactaacgcc
    50881 attttgcttt gtagttcggc aatcagttgt tgccaatatt gcaccgactg ctgatccagc
    50941 ccttcaaacg gttcgtctaa aatgaataaa tccggctcgc tcactaacat ttggcaaaat
    51001 agcactttgc ggctttcacc ggtggaaagg tgcataaacg ggcgttcaag cagatgttga
    51061 atatgcaatt tgtgggcata ttcctcacat aatgcctctt ttggactgcc atttaaaatt
    51121 acttgtcgtg cggttaagcc gaaatcatcg ggcgagacac tatcgttgtt ccgatctttg
    51181 aaaatctgat ccaacatttt ttgttgttgc tcgaaagaga ggagctgaat atgttggaac
    51241 gaattaccat agtcgccgga atagagcgag attttatcct gtaaagcgag tgaaaaagct
    51301 gttttgcctg aaccgtttcc gcctacgacc acccaaaagt cattgggttg gatctgtaag
    51361 gcgtcaatcg tgagtttatg ttgtttaacc agtgaaaatc gggcattggt tattgtaagt
    51421 gaaggctgtg tttgcatata tttcccgttt taacttagtt gtgtcccgct gacgaaccaa
    51481 tccgctcgac cgtttaagaa atcttgcacc gacattggtt ttttactcgc cggttgaagt
    51541 tgggtaatat tcagcacgcc ctgttgggtg gcaatttgaa tcccggtttt atccacatta
    51601 attaccgtgc cggctgcttt ttcttggtga ggtaacaccg tggcttggtg aattttgata
    51661 ctttgctcaa cgccatcaac ggttaaggtt aaaaaactaa acggccaagg gttaaaagct
    51721 cggatattgc gctccagttg aacggctggg agttgccaat ccaatttagc ttcttctttg
    51781 gaaagtttct cggcgtaatt ggacagtgct tcatcttgtt tttccgcttt gaatgtgtgg
    51841 ttggctaaac cgtttaacac ctcaagcaat gccagagggg caagttctgc cagtttggca
    51901 tacaaggagg cggaggtttc attcggctca atcggggttg tgactttatg taacatatca
    51961 ccggtgtcta agccaacgtc cattagcata atggttacgc cggtttctgt atcacctgcc
    52021 caaatcgaac gctgaatcgg agctgctcca cgccagcgag gtagtagcga accgtgtacg
    52081 tttaggcaac catatttagg agcattcaat actgcttcag gtagaattaa gccgtaagct
    52141 accaccacca tcacatcggc atttagggct ttcagttcag cttgagcctc ttccttacgc
    52201 agggatttgg gttggtaaac aggaatgttg tgagcttcgg ccagctgttt taccgggctg
    52261 gcttgcagtt ttttgcctcg cccggcaggt ttatccggct gagtataaac cgcaatcacg
    52321 ttatgctcgg aatctaataa ggcttgtaaa tgttgagcgg caaaatcagg cgtgccggca
    52381 aaaataatat tgagttttga catatttttt attcgttcaa gttatcaatg aaagacttat
    52441 taaaccatta aacagcacaa ataaaaagtg gcttgaatat ggtatcattg ccacattcaa
    52501 gataagagaa tcaaacaatg gaatttttta tccccaaagc ggatacaatt tttgaagaag
    52561 agattaaaaa aagccgattt atcacctacc ttcgccatac tgagggtatg gagcaggcca
    52621 aggcattttg gcaggagctg aaaattcagc atccgcacgc acgccattgg tgttgggcaa
    52681 cggtggcagg cttgccgaat gattcgcaac aatacggctt ttcggatgat ggagaaccgt
    52741 ccggtacagc aggtaagcca atgctcaatt atttgcttgg atcaggcttg ggggaaatta
    52801 cagcggtggt ggttcgctac tacggtggta tccagcttgg caccggcggc ttggtgaaag
    52861 cctatggcaa tggggtgcaa caggcgttat tgcagttgga gcggattcgc aaagttttgc
    52921 gaaaaaacta ccgcttgcaa tgtgaatatg agcagtttaa taccatttct catctcatta
    52981 gcgagaaaga tattgtgatt gtcgagcaac tttttagcga taaagtggat ttgttgctgg
    53041 catttaaccc gagcgaggtt gaggcctttg cagatgaatt aacccaacgc ttttcgggca
    53101 agctcgcatt aataaaagaa gaaatctagt ctatgcaatt tttttccatt attcgtattg
    53161 ttggcatttt ggtgatgtgt ttttcattca caatgcttgt gccggcaacg gtcgccctaa
    53221 tttatggcga tggcggtggg cgggcgtttt tagaagcctt cgctctgaat tttatggtcg
    53281 gtacgctgct ttggtggctg tgccgtgaca acaaaaacaa gctacgttcc cgtgagggct
    53341 ttttgattgt agtactgttt tgggtggtgc tgggtttgct cggggctgtg ccttttatta
    53401 ttttggaaaa ccccgattta aacgtggcgg aatccatttt tgaatccttt tccggcttaa
    53461 ctacaacggg tgcaaccgtc atcaccggct tagatagctt gcccaaagcg attttattct
    53521 accgccaatt tttgcaatgg ctagggggaa tggggatcat tgtgttagcg gttgcgatta
    53581 ttccgctgtt aggcattggt ggaatgcaac tttaccgtgc ggaaatgccc ggaccgctca
    53641 aagagcagaa aatgcgacct cgcattgcgg aaacggcaaa agcgttgtgg ctgatttatc
    53701 tcagcctgac gattctgtgt gcggtcgcat tttggctcgc cggaatgacg gtgtttgatg
    53761 ccatttcgca tagcttttcc acggtttcga ttggcggatt ttctacccac gatgccagca
    53821 tcggctattt taataatgcg gcaattagct atattaccgt gtttttcctg ctactttctg
    53881 cctgcaactt tgcattgcat tttgcggtga ttgatcgcat acgagatgca caatcacgca
    53941 aaaaaggggg tattttaagc cgcttgtatt ggggcgatta cgagtttcgt tttttcttga
    54001 tagtgcagtt agggcttttc ttggtttgta ccttggtgtt agtgggttac ggttatttcg
    54061 ataatacctc tgttacgatt gagcaagcgt tgtttcaatc ggtgtccatt tccaccacgg
    54121 ccggctttac taccaatgat tttagccaat ggagttcgtt tttacccacg ctgttggtgc
    54181 tgtcttcatt tatcggtggt tgtgccggct caaccggtgg cggcttgaaa gtgattcggg
    54241 tgttgctgct ttatttacaa agtaaacgtg aaatccaccg ctacattcac cccaatgtga
    54301 ttcaaccgat taaattaggc aaccacgttt tatcggaacg ggtggttgat ggtatttggg
    54361 cgtttttctc ggcgtacttt ttcgttttcg tgatctgctg gcttgctacc atcgcttgcg
    54421 gaatggaaac ctttgatgct ctaaatgcgg taattgcctc actaaataat ctaggtcctg
    54481 cattagggag cgtgagcagc aatttcaccc aagtgccgga cagtgccaag ttagtgctga
    54541 cttttgcaat ggtatgcgga cgtctggaag tgtttacctt gctggtgatt ttaagccctg
    54601 ttttttggaa agattaaatg aaaaccttaa ttctctattt tacgaccgat ggtcaaacca
    54661 aaaaaattgc cgaacgattg gcggacgtga ttactcacga agtcgagctg atttcgctaa
    54721 aagatcaagc ggtcgatttt gccgaaaaaa ttgcaaatgc cgaccaaatt gtcatcggtg
    54781 cttcaattcg ctatgggcat tttaacccgt tggtttatca gtttgtggaa cagcattatc
    54841 cggcattaaa cgccaagaaa actgcctttt acggtgtgaa tttgaccgct cgcaaagata
    54901 atcgaaacac gcctgaaacc aatacttatg tgcgtaaatt tttagctaaa gtgaaatgga
    54961 aaccaaccca cattgaggta attgctgggg cattacttta cctacgctat aagccattcg
    55021 accgattgat gattcgcttt attatgaaaa ttaccaaagg cgaaaccgat acctccaaag
    55081 aatatgagta caccgattgg cagcaggtgg agaattttgg caaattatta gccaatcagt
    55141 tataatcaaa ctgatctaaa tcaaaaaaat gtaaatttat ttaaatgttg tagaaatttt
    55201 aaagattttg attataatcg ccagcccacg ttcttgcgaa gaccgtgttt aatcattgaa
    55261 tgaaaggaaa gccccctatg agtattttaa aagagttccg tgaatttgcg gtaaaaggta
    55321 atgttgttga tatggctgtc ggtgtgatta tcggcggtgc attcggtaaa attgtttctt
    55381 cattagttag cgatgttgta atgccaccta tcggttggtt aatcggtggc gtggatttca
    55441 aagatttagc cattgaaatc gccccggcaa aagaaggtgc ggaagcagtg atgttaaaat
    55501 acggtgcatt tatccaaaac gtatttgatt tcttaattat cgcacttgcg gtattcggta
    55561 tggtgaaagt gattaactca ctgaaaaaag ctccagttgt agaagaagct cctgcagagc
    55621 caacagcgga agagaaatta ttaactgaaa tccgtgattt attgaaaaaa taattaactg
    55681 attttgaaac aagggctatt ttagaatatc tagaatagcc ctttgtgtta tggttaaaaa
    55741 gaaaaaaacc gacataaagt cggttttttt catatctgtt cgatattacg ctaatttttt
    55801 gatttgcgct gctaatttag atttgtggtt agccgctttg ttagcgtgga ttaagttttt
    55861 agatgccata cggtctacaa ctttttgcat ttcaacgaaa gccgtttgag ctgctgcttt
    55921 atcgcctgct gttactgctg catatacttt tttgatgaat gtacgcatca ttgagcgttg
    55981 gcttgcgttg tgttggcggc gtttttcaga ttgaaccgca cgtttttttg ctgacttgat
    56041 attagccaag gtcaaactcc taaaatatct gtgtaaaaat tagatataaa caaaatcgtt
    56101 gtttatattg cctatcgata gtttttaatt cattttcaac gagacacgtg cttgaaaata
    56161 acaccgtttt tctgatagaa aacgataggg cgagatttta acagtttttt tctgattttc
    56221 ctataacaaa ctgctaaaat tatgatcgat
//
LOCUS       DANLUT010000004        44194 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLUT010000004 DANLUT010000000
VERSION     DANLUT010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 44194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44194
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            135..1742
                     /gene="pckA"
                     /locus_tag="PXB38_000194"
     CDS             135..1742
                     /gene="pckA"
                     /locus_tag="PXB38_000194"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL5352563.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            1835..2836
                     /gene="bioB"
                     /locus_tag="PXB38_000195"
     CDS             1835..2836
                     /gene="bioB"
                     /locus_tag="PXB38_000195"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL5352564.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEELFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            2992..3089
                     /gene="ffs"
                     /locus_tag="PXB38_000196"
     ncRNA           2992..3089
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXB38_000196"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3124..3831
                     /gene="gloB"
                     /locus_tag="PXB38_000197"
     CDS             3124..3831
                     /gene="gloB"
                     /locus_tag="PXB38_000197"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL5352565.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            3990..4703
                     /gene="uppS"
                     /locus_tag="PXB38_000198"
     CDS             3990..4703
                     /gene="uppS"
                     /locus_tag="PXB38_000198"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL5352566.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKKLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4727..5596
                     /locus_tag="PXB38_000199"
     CDS             4727..5596
                     /locus_tag="PXB38_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL5352567.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGTVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5600..6910
                     /gene="rseP"
                     /locus_tag="PXB38_000200"
     CDS             5600..6910
                     /gene="rseP"
                     /locus_tag="PXB38_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL5352568.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNGETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQMGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            7025..9406
                     /gene="bamA"
                     /locus_tag="PXB38_000201"
     CDS             7025..9406
                     /gene="bamA"
                     /locus_tag="PXB38_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL5352569.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVANNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRLYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTENGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSVASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPATDYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAIGPQAIYYNTKSGKFD
                     SMKNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWHTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            9486..10277
                     /locus_tag="PXB38_000202"
     CDS             9486..10277
                     /locus_tag="PXB38_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL5352570.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            10277..11302
                     /gene="lpxD"
                     /locus_tag="PXB38_000203"
     CDS             10277..11302
                     /gene="lpxD"
                     /locus_tag="PXB38_000203"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL5352571.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGHFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            11331..11789
                     /gene="fabZ"
                     /locus_tag="PXB38_000204"
     CDS             11331..11789
                     /gene="fabZ"
                     /locus_tag="PXB38_000204"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL5352572.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            11823..12617
                     /gene="lpxA"
                     /locus_tag="PXB38_000205"
     CDS             11823..12617
                     /gene="lpxA"
                     /locus_tag="PXB38_000205"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL5352573.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(12655..14655)
                     /gene="mnmC"
                     /locus_tag="PXB38_000206"
     CDS             complement(12655..14655)
                     /gene="mnmC"
                     /locus_tag="PXB38_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL5352574.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNLEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEHNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYNEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLIRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(14880..16316)
                     /gene="trpCF"
                     /locus_tag="PXB38_000207"
     CDS             complement(14880..16316)
                     /gene="trpCF"
                     /locus_tag="PXB38_000207"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL5352575.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQIPADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            16404..16715
                     /locus_tag="PXB38_000208"
     CDS             16404..16715
                     /locus_tag="PXB38_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL5352576.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            16869..17606
                     /gene="truC"
                     /locus_tag="PXB38_000209"
     CDS             16869..17606
                     /gene="truC"
                     /locus_tag="PXB38_000209"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL5352577.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVHLVQKTYLAVVRGYLQGSA
                     QIDYPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPK
                     TGRKHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQ
                     KIEIIASLDEQWQRLFAFFDWNFTQYY"
     gene            17624..17788
                     /locus_tag="PXB38_000210"
     CDS             17624..17788
                     /locus_tag="PXB38_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL5352578.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            17781..18257
                     /locus_tag="PXB38_000211"
     CDS             17781..18257
                     /locus_tag="PXB38_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352579.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(18294..19145)
                     /locus_tag="PXB38_000212"
     CDS             complement(18294..19145)
                     /locus_tag="PXB38_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL5352580.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            19206..20615
                     /locus_tag="PXB38_000213"
     CDS             19206..20615
                     /locus_tag="PXB38_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL5352581.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPSRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            20661..21011
                     /locus_tag="PXB38_000214"
     CDS             20661..21011
                     /locus_tag="PXB38_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5352582.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            21004..21327
                     /locus_tag="PXB38_000215"
     CDS             21004..21327
                     /locus_tag="PXB38_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5352583.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            21435..21914
                     /gene="smpB"
                     /locus_tag="PXB38_000216"
     CDS             21435..21914
                     /gene="smpB"
                     /locus_tag="PXB38_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL5352584.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            22117..23424
                     /gene="serS"
                     /locus_tag="PXB38_000217"
     CDS             22117..23424
                     /gene="serS"
                     /locus_tag="PXB38_000217"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL5352585.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(23483..23809)
                     /locus_tag="PXB38_000218"
     CDS             complement(23483..23809)
                     /locus_tag="PXB38_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352586.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(23802..24014)
                     /locus_tag="PXB38_000219"
     CDS             complement(23802..24014)
                     /locus_tag="PXB38_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352587.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            24201..26786
                     /gene="leuS"
                     /locus_tag="PXB38_000220"
     CDS             24201..26786
                     /gene="leuS"
                     /locus_tag="PXB38_000220"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL5352588.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIASSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQRRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            26986..27474
                     /locus_tag="PXB38_000221"
     CDS             26986..27474
                     /locus_tag="PXB38_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352589.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTNSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            27517..28542
                     /gene="holA"
                     /locus_tag="PXB38_000222"
     CDS             27517..28542
                     /gene="holA"
                     /locus_tag="PXB38_000222"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL5352590.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMKKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(28543..28728)
                     /gene="yacG"
                     /locus_tag="PXB38_000223"
     CDS             complement(28543..28728)
                     /gene="yacG"
                     /locus_tag="PXB38_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL5352591.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(28710..29345)
                     /gene="coaE"
                     /locus_tag="PXB38_000224"
     CDS             complement(28710..29345)
                     /gene="coaE"
                     /locus_tag="PXB38_000224"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL5352592.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEQEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(29381..30037)
                     /locus_tag="PXB38_000225"
     CDS             complement(29381..30037)
                     /locus_tag="PXB38_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL5352593.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(30040..31236)
                     /locus_tag="PXB38_000226"
     CDS             complement(30040..31236)
                     /locus_tag="PXB38_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL5352594.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(31220..32623)
                     /locus_tag="PXB38_000227"
     CDS             complement(31220..32623)
                     /locus_tag="PXB38_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDL5352595.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAVPLQETAE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSEELKFLLNALSPEQSSPQSEIYEEN
                     PLYPFSENTEQPDRNDPIIQILENLFKFCLQQNASDIHLEPQKERLLIRLRIDGVLHI
                     YKSLPSSLSSRLISRVKLLAKLDISETRLPQDGQFHFKTLLAETLDFRVSTLPTHFGE
                     KVVLRLQKNKPTHFDFLDLGFNPTQKANLLNALSQPQGLILVTGPTGSGKSITLYSAL
                     SHLNSSEKHILTAEDPIEIEIEGIIQTQVNRGINLDFSQLLRTFLRQDPDIIMLGEIR
                     DEESAEMALRAAQTGHLVLSTLHTNDAPSAVERLLQLGIKEYELKNSLLLVIAQRLLR
                     RVCVKCGGAGCEHCYQGYKGRIGVYQLLNRSAKNFEKNTACLDFKTLADSAKEKLTEG
                     KTNQAEILRVLGNDENL"
     gene            complement(32644..33123)
                     /gene="ppdD"
                     /locus_tag="PXB38_000228"
     CDS             complement(32644..33123)
                     /gene="ppdD"
                     /locus_tag="PXB38_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL5352596.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVELCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            33305..34684
                     /gene="radA"
                     /locus_tag="PXB38_000229"
     CDS             33305..34684
                     /gene="radA"
                     /locus_tag="PXB38_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL5352597.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCRECKSWNTISEVRLISSKE
                     TAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANRLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(34739..34969)
                     /locus_tag="PXB38_000230"
     CDS             complement(34739..34969)
                     /locus_tag="PXB38_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL5352598.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTATHS"
     gene            complement(35089..35583)
                     /gene="folA"
                     /locus_tag="PXB38_000231"
     CDS             complement(35089..35583)
                     /gene="folA"
                     /locus_tag="PXB38_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL5352599.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            35695..36786
                     /gene="proB"
                     /locus_tag="PXB38_000232"
     CDS             35695..36786
                     /gene="proB"
                     /locus_tag="PXB38_000232"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5352600.1"
                     /translation="MSKTIVIKFGTSTLTHGTKSLSRPYMLELVKQIAQLHQQHRVIV
                     VTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWENLFDIYNIHIGQMLLTR
                     ADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKVGDNDNLSALVAILAQAD
                     QLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGGSSTGLGTGGMSTKITAA
                     DIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRLEGRKRWLFAAPQVGEIV
                     VDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGKALALGIARYSSEALLRI
                     KGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            36786..37550
                     /locus_tag="PXB38_000233"
     CDS             36786..37550
                     /locus_tag="PXB38_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL5352601.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            37553..38185
                     /gene="nth"
                     /locus_tag="PXB38_000234"
     CDS             37553..38185
                     /gene="nth"
                     /locus_tag="PXB38_000234"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL5352602.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            38380..39630
                     /locus_tag="PXB38_000235"
     CDS             38380..39630
                     /locus_tag="PXB38_000235"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL5352603.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELEHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(39731..40666)
                     /locus_tag="PXB38_000236"
     CDS             complement(39731..40666)
                     /locus_tag="PXB38_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL5352604.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWGF
                     YLGELLIFLGVMVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(40795..40989)
                     /gene="iscX"
                     /locus_tag="PXB38_000237"
     CDS             complement(40795..40989)
                     /gene="iscX"
                     /locus_tag="PXB38_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL5352605.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(40989..41330)
                     /gene="fdx"
                     /locus_tag="PXB38_000238"
     CDS             complement(40989..41330)
                     /gene="fdx"
                     /locus_tag="PXB38_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL5352606.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(41349..41714)
                     /locus_tag="PXB38_000239"
     CDS             complement(41349..41714)
                     /locus_tag="PXB38_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL5352607.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(41724..43577)
                     /gene="hscA"
                     /locus_tag="PXB38_000240"
     CDS             complement(41724..43577)
                     /gene="hscA"
                     /locus_tag="PXB38_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL5352608.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTARFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
     gene            complement(43893..>44194)
                     /locus_tag="PXB38_000241"
     CDS             complement(43893..>44194)
                     /locus_tag="PXB38_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL5352609.1"
                     /translation="NMTEAEKVLWQALRAKRFLAIKFKRQQVIGNYIVDFVCFSAKLV
                     IELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAVLDTIFYEITRG"
BASE COUNT        13498 a         9269 c         8774 g        12653 t
ORIGIN      
        1 acaaacaaat gcgtatttta aagcggtttt tttaaactaa atgtcaaaaa tttgaagtat
       61 gtaacatttt ttatttttca attttcgtat aatcaaccca gttttaaatt tataactatt
      121 atgaggtaac cactatgtta aatcgtattg aacaagaact tgcagactta ggcattacaa
      181 atgtaaaaga aatcgtgcgt aaccctagct atgagcaact gtttgaagaa gagatgaaat
      241 cggatcttaa aggttatgaa aaaggcgtcc taacaaattt aggcgcagta gcggtagata
      301 ccggcatttt cacggggcgt tcgccgaaag ataaatatat cgtattagat gaaacgacaa
      361 aagataccgt ctggtggaca tctgatgcag ctaaaaatga taataaaccg atgactcaat
      421 ctacttggca aagtttaaaa accttagtga ccgatgagtt atctaataag cgtttattta
      481 ttattgatgc tttctgtggt gcaagccctg agcatcgcat caatgtgcgt attattaccc
      541 aagttgcgtg gcaagctcac tttgtgaaaa atatgtttat tcgtccaaca gaagaagaat
      601 taaaagattt caaaccggat tttgtggtaa tgaacggttc ccaagtaact aacccgaact
      661 ggaaagagca aggcttaaat tcagaaaact ttgtggcatt taatatcaca gaaggtgttc
      721 agatcattgg cggtacttgg tacggtggtg agatgaaaaa aggtatgttc tctatgatga
      781 actacttctt accattaaaa ggtgtcgctt caatgcactg ttcagccaat gtgggcgaag
      841 aaggtgatgt ggcggttttc tttggtttat caggaaccgg taaaacgaca ctatcaaccg
      901 atccgaaacg caaattgatt ggtgacgatg aacacggttg ggacgaaaac ggcgtattta
      961 actatgaagg tggttgctat gcgaaaacca tcaacctttc tattgaaaac gagccggata
     1021 tttatcgtgc aatccgccgt gatgcgttat tagaaaacgt ggttgtgcgt gaagatggca
     1081 ctattgattt tgatgataaa tcaaaaacag aaaatacccg tgtgagctat ccgatttatc
     1141 atattgataa tattgccgtg ccgtcaaaag caggacacgc taaaaaagtg attttcttaa
     1201 cggcagatgc attcggcgta ttgccaccgg tgtctaaatt aacgcctgaa caaactaaat
     1261 actacttctt atcaggcttt accgcaaaat tagcaggtac agagcgtggt attactgagc
     1321 caaccccaac tttctctgct tgtttcggtg cggcgttctt atcactccac ccgacacaat
     1381 atgctgaagt gttagtgaaa cgtatggaag cagccggtgc ggaagcctat ttagtgaata
     1441 ccggttggaa cggcacaggt aaacgtattt cgattaaaga tacacggggt attattgatg
     1501 ccatcttaga cggctcaatt gagaaagcgg aaatgagtac attaccaatc ttcaatttag
     1561 caattccaac tgcgttaccg ggtgtagaaa cccacatttt agaccctcgt aacacttatg
     1621 aagacaaagc acaatggcaa gctaaagcag aagatttagc tggcagattt gtgaaaaact
     1681 ttgaaaaata tgcgaccaac gaggaaggca aagcattaat tgctgctggt ccgaagttat
     1741 aagttgtaat tataagttat aatcgctaaa aaattagttt aggactaaac cttgaatgag
     1801 gtttagtcct tttgtataaa ggagaagtac aataatgaca acattccaat taaggctgaa
     1861 agccaaagat gagcttaccc cacacccaac agcacaatat tggcgaaaat gccaagtgga
     1921 agaactattt gatctgccgt ttatggattt agtgtttaga gcggcacaag ttcaccgtga
     1981 aaattttgat gctaatgcga tccagctttc aacgttactc tcaattaaaa caggaggctg
     2041 tccggaagat tgcgaatatt gcccccaatc tgcccgctat gatacgggaa tagaaaagca
     2101 aacaatgctt gatgtagaga cgattgtaga aaaagctaaa attgccaaag agcgtggagc
     2161 aagccgcttt tgtatggggg ctgcgtggcg aggacctagg cctaaagata ttaaagtagt
     2221 ctcagaaatc atcaatgcgg tgaaatcatt ggggctagaa acctgtggta ctttcggtat
     2281 gcttgaagag ggaatggcag aagaattaaa gcaagcagga ctggattact acaaccataa
     2341 tttagatacc gaccctgaac gctataacaa aattatccat acccgaaatc acgaagatcg
     2401 aatggacact ttaggtaaag ttcgcaatgc cggcttgaaa gtttgctgtg gcggtattgt
     2461 gggaatgaac gaaacccgcc ccgagcgagc aggcctaatt gcaagcctcg ctaacctcga
     2521 tcctcaacct gaaagcgtac cgattaatca gttgattaaa gtagaaggta caccgcttac
     2581 caatgccgaa gatttagact ggacagaatt tgttcgtacc attgcggtag caagaattac
     2641 tatgcctcaa agctttgtcc gactttctgc tggcagaact actatgccgg aggcaatgca
     2701 agccctctgt tttatggcag gagcaaattc tattttctat ggcgataaat tacttactac
     2761 agaaaatccg gaagaagatc atgatcgcca attaatggat aaattagatt tatatccgct
     2821 acaatatata gcctgagtgc caatgatttt cgcctgaaaa ttaaagaatc aagcgttatt
     2881 ttacgcaaat ttctaacata aaataaccgc ttgcaaaatt cgttcttgtc ttatttttaa
     2941 atttatctat aatgtgaggc cttacgcaag cttgcgtaat tcgatggggc gttattggtt
     3001 cctcgcaatg gtgttcagct tacttgatca ggttcggaag aaagcagtct gggttgaaat
     3061 ttccgtgtgc cgagggtggc tggtaatgcc ccaccctttt ttcagttcta tcaggagaac
     3121 gttatgctcc agatcactcc cattccggca ttaaaagata attacatttg ggcaatccgt
     3181 aacgggcaag atgtgattat tattgatcca tcagaacatc agccagcatt aaactttatt
     3241 gcaaaaaatg cgttaaattt aaccgctatc ttgattaccc ataatcacca cgaccatact
     3301 gatggggtga gtggtattgt tgagcaatat ccgaatatcc ctgtttatgg tccgcaagaa
     3361 gtggctgaat ttgccaatgt gattgtctcg cctgaacaac atatcagcct gtttggttat
     3421 gatgtaagga ttattgaaag tggtgggcat accgcagggc atatcagtta tttatttggc
     3481 tatgattatc tgttttgtgg cgatgcgtta ttctccggcg gttgcgggcg ggttttcacc
     3541 ggtgattacc aagcccaatt tgatgcgtta caacgcttta aaaatctgcc taactcggtt
     3601 aaagcctacc cggctcacga atacaccaag agcaatttga aatttgcaga agcggttcta
     3661 ccaccaagct gtgtattatc ggaatatcaa gaacaggttg atcttttacg ttcgcaaaac
     3721 aaaccgactt tgccaaccac tattggcttg gaaatgcagg tgaacccgtt tatgcaagcg
     3781 gtcgatttag ccgaatttat tgcacttcgt cagcaaaaag acaattttta acctcatatt
     3841 tctaattaag cattaaagcc tctcacttta atgctttttg gttaaataaa acctttgcaa
     3901 acatcgcttg tcaattccac tctggcttat cctatggtat agttacgact atttttagct
     3961 taatttatta ttttagtgag taaaattctg tgaacttcga tcctcaaaat atgcctaagc
     4021 acgttgccat tattatggat ggcaatggca gatgggctaa gcagaaagga aaattacgca
     4081 tttttggtca tcagaatggt gtaaaggcag ttcgttctgc agttagtttt gcagcaaagc
     4141 atcatatcca agttttaacc ctctacgcat ttagcagtga gaattggagc agaccagaaa
     4201 ctgaagtttc agctttaatg tctctgttta tgaaagcttt agattctgaa gttaaaaaat
     4261 tacataaaaa taatattcgc ttaaagatta taggcgataa atccgccttt agcgaaaatt
     4321 tacaaaaacg cattgccgaa tcggaaaaat taaccgaaaa caatactggg ctaatcttaa
     4381 acattgctgc caactatggt ggttactggg atattgttca agctgctcaa caactagcag
     4441 tacacgttaa atctgaacaa cttgctgtgg agcagattac accagcattg tttcaacaac
     4501 atttagtgac agaaaaccag ccgcaagtgg atttattaat tcgaaccagt ggcgagcagc
     4561 ggatcagcaa ttttctatta tggcaaattg cttatgccga gctgtttttt agcccggttt
     4621 tatggcctga ttttaatgat gaggctttta gtgatgcaat ttatgcttat cagcaacgtg
     4681 aacgccgatt cggtggttgt taatataaaa agaataagga aatacaatgc ttaaagaacg
     4741 tgtactttca gcgattatta tgattattgc cgtgctggct gccatatttt ggctctcacc
     4801 acttccttta actttagtgt tatcggcaat tgttgtggct gcaatgtggg aatgggctca
     4861 atttgccggc tttaaacacc ctgtgccacg tgcaattgtg gcaatggtga caatctgctt
     4921 attacttttt gcgatcgttg cgaatactga ttatatccga gccacccgtt ttattactga
     4981 tgagactacc cctatcctct ttattggctg tatttggtgg ttaattgccc ttgtcctagt
     5041 ggcaacttac cccaactcgg caaaactgtg ggaaaaatct gttgcagcta aattcctatt
     5101 tggacttgct accttagtgc cgtttttaat tggcacgctc gcattgcgtt tccataatta
     5161 tgcatttgat ccataccaag gaacttattt attcctttac gtctgtttat tagtttgggg
     5221 agctgattca ggtgcttatt ttgctggcag agcctttggc aaaagaaaac ttgccccaaa
     5281 agtatctccg ggtaaatcgt gggaaggcgt aattggtggc gtactcacct ctagtttgat
     5341 tgcctttacc tttttacaac ttacaccggc aaatgtattc ggcaaagcat tagccactac
     5401 cccatttatt ttagtttcgg tcggtacggt tgctatttca gtcttaggcg atttggcaga
     5461 aagtatgttt aaacgccaag caggcattaa agacagtagc cagttaattc ctgggcatgg
     5521 aggtatttta gatcgtattg atagtttaac cgctgccgtt ccgttttttg ctacattctt
     5581 cttttttgta ctatagaata tgacgtccat cattgcattt tttattttaa tttgcgtact
     5641 ggtttttgtg catgaatacg ggcacttttg ggctgctcgc aaatgcgggg taaaggtgat
     5701 ccgtttttcg atcggatttg gtaaagtctt atttaagaaa aaagataaac aaggaaccga
     5761 atttgttttt tcacttattc ctctgggcgg ctatgtacaa atgtggaatg gtgaaacgga
     5821 tatcaacgct ccagctcaac aagctcttaa cacaaaatct gtattgcaac gtgcatttat
     5881 tattatagcc ggtcctgctg caaattttat ttttgcgatt ttggcatact gggtcgtttt
     5941 tattgccggt attccaactg ttaaacctgt tattggggaa attttaccaa acactatcgc
     6001 ctcccaagca agaattccta ccgaattgga aattacaaaa atcggtcatc aatctatcca
     6061 agattgggaa agtgcatctt tagcactagt tggttttgtg ggcaataaaa atgtaccgtt
     6121 agagggaaat atcaacggca actcaacaca aaaatatgaa ctcgatttat ctaactggag
     6181 tattgactca gccaaagaaa acccattaac cgcattaggt attcgcccca aaagtgcaaa
     6241 agtcaccgct gaaattaaac aagttgtcga aaattctcct gcaagccaaa tgggtattca
     6301 agcaggtgat cgtattcttc aaattaacca gcagccattt aattggttca atttagttga
     6361 actggtacaa gcaggtaaac ctattgaact taaaattgaa caacgaggtc agattaaaga
     6421 ccttgtcgtc caaccagaaa aaaaagacga acgctatatt atcggggtaa taccaagtta
     6481 tgagcctctt gcagataaat atcgtaccga attaaaatat gatattctta ccgcatttta
     6541 taaaagtatc gaaaaagtgt ggtctcttac ccaaaccata ctccaattta tcggtaattt
     6601 aataagcggt gatttgtcca ttaaaaattt aggtgggcca atttcaatgg caaaaggagc
     6661 cggtgcaaca gctgaaatcg gcttagttta ttaccttagt tttatggctc taatcagtgt
     6721 caatttgggg gtaatgaact tatttccact tttaccctta gatggtgggc aacttgtttt
     6781 attggctgtt gaagcaattc gtggaaaagc attatcagaa aaaatacaac tcaaattcca
     6841 acaaattgga tttgcattcg tgctgagttt aatgttattc gcctttgcca acgatataat
     6901 tcacttttaa caagcggtta aaaaaggtga cttttttgca aaaagcaccc tgacatcaaa
     6961 atccataata tggatttaca ctatattctt aataattttg caaaacgatc ataggataat
     7021 ttcaatgaaa aaattattac tttcctctct tttaattgca aacggtgtag ttgctgcacc
     7081 tttcgtagta aaagacattc gtgttgaagg tgtgcaacct acaacaggcg aatctatcat
     7141 ttcatctatt ccggttagag taggtcaaac agcaacggat actgacgtat ctaatgtcgt
     7201 ccgccatcta ttcagccaac aacgttttgc agatgttcgt gcaacacgag aaggcaatac
     7261 gcttgtcatc aaagtcgctg aaaaaccgat tattggcaag gtagagatcg aaggtaacca
     7321 agcgattcct aaagatgcct tagagcaaaa tttaaaggca aacttaatta accaaggtga
     7381 aatttttgat gctgccaagc ttgaagcttt taaagaagga ctaatcgaac attatcactc
     7441 taccggccgt tatgaagcca aaattgacac atctgttgcg aataacaccg aaggtggcgt
     7501 taatattaag ttagcgatta atgaaggtga agttgctaaa gccaaaacaa ttaagtttga
     7561 aggtaataat gccttctctg ataaaaaatt attagaaaac ttagatattc aacctgatgt
     7621 ttcttggtgg aatatttttg aaagtagcaa attcgaacaa accgcctatc aaaaagactt
     7681 agaaacatta agagattttt atttaaatcg tggctatgca aaatttgcta tccaagatac
     7741 cgatgttcaa ttcaatgata ataaaacgga agttgcattg acctataaat tagatgaagg
     7801 gtcacagtac catgtcagtg aaatgcgcat tatcggcaat acagccaata tggatagcca
     7861 gctcaacgcc ctactaaaag aattcaagcc tggtcaatta ttccgtaaat cagaccttac
     7921 acaaattgaa gaagagatta aatctatttt aggggacgca ggttatggtt cagctaaagt
     7981 agatatttat cctcaattta atgaagaaaa taaaaccgta aaaatcagtt ttgttgtgga
     8041 tgccggtcgt cgtctttatg ttcgtaaaat ccgttttgaa ggtaatggtg tcactgcaga
     8101 ttcaacatta cgtcgtgaaa tgcgccaaca agaaggtgct tggctttcca caaacaaagc
     8161 ttctctaggt aaagctcgtt tagaaagaac cggtttctat gaaagtgttg atatgtcaat
     8221 gccaaatgta gaaggtacag ccgatcaagt tgatgtagtg tataaaatta aagaacgcaa
     8281 taccggtagt attaactttg gtatcgggta cggcacggaa aacggtatca gctatcaagc
     8341 aggaattaaa caagataatt tcttaggtat ggggtcaact atcagtctaa atggtacccg
     8401 taataactac ggtaccagcg ttaacctagg ctataccgaa ccttacttta ctaaagatgg
     8461 tgtaagttta ggcggtaata ttttctatga agattatgat aactcagaca atgattcagt
     8521 ggcttcatat aaacgccaaa cctatggtat taacggcaca ttaggcttcc cggtaaatga
     8581 aaataactca tactacttag gtttaggcta tacgcacgat aaaattaaaa atgcagcacg
     8641 tgagtacact cgtgagaaat atgtaaaatc aatgaatttt gagttcgatc cagctaccga
     8701 ttattacaaa aaaatcaaag cggacgattt tgatttttct ctcggttgga actacaacag
     8761 cttgaataga ggctatttcc cgactgaagg aactactgca aatattggcg gtaaaattac
     8821 aattccaggc tctgacaata aatattaccg agtcagtgca gactttagaa attattaccc
     8881 gttaaaccgt gagcacaaat gggtaatttc aacgaaagct agcattgctt atactaatgg
     8941 atttggtggt aaagaagttc cattctatca gctttatact gccggaggta ttggtacact
     9001 aagaggtttc tcttacggtg ctattgggcc tcaagcaatt tactataata caaaatccgg
     9061 taaatttgat agcatgaaga atgatattat cggtggtaat gcgttagctg cggcaagctt
     9121 ggaattaatc acaccaacgc catttgtgag cgaaaaatat cagcacaatg taagaacatc
     9181 tctctttgtt gatgctgcaa gtgcatggca tacaaaatgg aagaaagatg aatatacgaa
     9241 cttgcctgac tatggtgatt tcaaacgttt ccgtgcttcc gccggtattg cattccaatg
     9301 gatgtctcca atcggaccat tatcattctc ttatgcgaaa ccaattcgta aatatgataa
     9361 tgatgatatt gaacaattcc agttcaacat tggtagttca ttctaattaa ccacaagcgg
     9421 ttaataaatg taaaaaattt gcaacttagc cgcttatttc aaaactgttc atacaaggaa
     9481 aacaaatgaa aaaattattt aaaatgactg gcttagccgt agctttagcc tctacaaccg
     9541 gaatcgcgaa tgctgcagat actattggtt tcgtagatcc aagctatgta ttacaaaacc
     9601 accctgtatt attagatgct tcggcaaaat ttgataaatt catgaaagaa agccaagaaa
     9661 aatttgctgc tgatgaaaaa aaattagcag atgaaaataa aaccttaacg gctgagcgca
     9721 ataaaattaa tgaagatgcg caaaaattac aaaatgaaca aaaaaatgta gaagcttcta
     9781 tcaagaaaaa agtggcagca ttagagaaag atgcgcctcg cttacgttca aaagagattc
     9841 aagcacgtca aaatgcgatt caaaaagaag caaacgcatt ccaagctaaa gtaacagcaa
     9901 ttcaaaaacg tgaagctgat tttgcaaaaa aagcagaagc cttccagaaa cgtgcagatg
     9961 aattccaaaa acgtattgaa caagcaaata aagaaaatgg tggcattaac ccacaagaag
    10021 cgcaaaaaca agcggttgat gaagtaaatg caaccattaa agagatcgca aaatcgaaag
    10081 gttacacttt agtattacaa ccacaagtag cactttatgc tgaagatgaa ggtaaagata
    10141 ttactgaagc agtacttgat gctattgtta aaaaacatcc ggaaattaaa atagaaaaac
    10201 ctgcaactga agctcaacca gctacagaaa aagaaaccaa agctgaagaa actaaaccag
    10261 aagaagcgaa aaaataatgg caaatttccg tttaattgat ttagcggagc atatcggcgg
    10321 tactcttagg ggtaacgccg atttggctat tcaaagtatt gctgctttag ataaagccga
    10381 cagctcgcaa attaccttta tctcaaatgc aaaatatcgg gaaaatttga ccgcttgcaa
    10441 tgctggagct attatcgtca gcccggcaga tgtagaattt tgccgagcag atcaaaatct
    10501 tatcatcgtt gccaatccgt atgttgctta tgctcaactg gctcaatata tggattctac
    10561 tccgaaagca gcgagcgaaa tccacccaag tgcggtgatt tcacctgaag ctaaactggg
    10621 taataacgta tcggtagggg caaatgccgt gattgaaagt ggcgtagaat tgggcgatga
    10681 tgccgtgatc ggtgcaggct gttttgtggg aaaaaacagt aaaatcgggg caagaaccca
    10741 actttgggca aatgtttcgg tgtaccacaa tgtacaaatc ggagctgatt gcttgattca
    10801 atcctcaacg gttatcggga gtgatgggtt tggctatgcg aatgacaaag ggcaatggat
    10861 taaaatccca caaaccggtg gtgtgattat cggtaatcgt gttgaaattg gtgcttgcac
    10921 ttgtattgac cgaggtgcat tagatccaac cgtaatcgaa gataatgtga ttattgataa
    10981 cctttgccaa atcgcccata atgtacacat tggttttggc actgccgttg ccggcggcgt
    11041 cattatggca ggcagtctaa aagttggtca cttttgccaa attggtggag caagtgttat
    11101 caacggtcat atggaaatct gtgatggtgc cataattacc ggaatgggta tggttatgcg
    11161 cccaattaca gaaaaaggaa tttactcatc aggtattccg ctacaaacca ataaagagtg
    11221 gcgtaaaact gccgcattag tgatgaatat tgatgaaatg aataaacgtt taaaatcact
    11281 tgaaaaacgt tttaacgatt aattttatta gaggtcttaa agtgacagaa atgacaactg
    11341 aaaatcgtga gccaaatatt attgaagtaa ccgaaattat ggatatgtta ccgcatcgct
    11401 accctttcct gttagttgat cgcgtaaccg attatgaaga agggaaatgg ttaaaagcca
    11461 ttaaaaatgt aaccttcaat gaaccttgtt ttaccgggca ttttcctggc gcaccaatct
    11521 tcccaggagt attgattctt gaagcaatgg ctcaagcaac tggcgtatta gccgttgcca
    11581 cttatggtaa gttaagtgaa gacgaactct actattttgc cgcaattgac aatgctcgct
    11641 ttaagcgacc ggttgtgccg ggcgatcaac ttcaacttga ggttgaattt cttaaagaag
    11701 tacgtggtat tactaaattt accggtaaag catacgttga tggcaaatta gtctgtgaag
    11761 cagatttaat gtgcgctcgc cgtaaataat tcgatataag cccaaactag agggaacaaa
    11821 ctatgcgtct aattgattca acagcaaaaa ttagcccgct tgccatcatt gaagaaggtg
    11881 ctgaaattgg cgctcacgtt gaaattggtc cattttcagt catcggtaaa gatgtcaaaa
    11941 tcggggctag aacgaaaatt cactcaaatg ttgtcattaa cggcatgact gaaattggtg
    12001 aagataacca tattttccaa tttgccagca ttggggaaat caaccaagat ctaaaatacc
    12061 aaggtgaacc aaccaaagtg gtgatcggta atcgtaaccg tattcgtgaa agtgttacta
    12121 ttcaccgagg tacggtacaa ggcggtggcg tgacgaaaat cggtgatgat aacttattta
    12181 tgatcaacac ccacatcgca cacgactgct ctatcggtaa ccgttgtatt atcgccaata
    12241 atggtacgct agcaggtcac gttaccctag atgatttcgt gattgtggga ggaatgtccg
    12301 ccattcacca attcgttgtg attggttcac acgttatgct tggaggcggt tcaatggtca
    12361 gccaagacgt accgccttat gtcatggcac aaggtaacca cgcacgccca tttggtatta
    12421 actttgaagg gttaaaacgt cgtggctttg ataaaccaac tatgcacgct attcgcaaag
    12481 tctataaact gatttactcc agcggaaaaa cattggaaga gtgcctagta gaaattgagc
    12541 aaattgcagc aacagaacct gcgattgcta tttttaaaca attcttcaaa cgttctaccc
    12601 gtggtattat tcgttaataa acgaaacccc gaaatcaatt cggggtttgt tttatcaagc
    12661 gaccgtcgaa cctttcaaca attttcgaat ccaagctcga tttgggctaa ggttatgcca
    12721 aatatcctca ctgattggca caggctcatt cacaatcagg cttgctaaca attcccctag
    12781 aagtggtgca gtcgtcaaac ctcgagaaga caggccgttt accatataca gattggtaaa
    12841 aatttcagca ttttctaccg cttgtttccg tatcaactgg ttgtataaat tggcatattg
    12901 gcttttttgc tgctcaaaat gatgcactgc cccaaccatc ggtacacgat cacgaaacgc
    12961 cgcacgaata ccgactttgg ctttattttc agataaatca attccttgcg tccactcaca
    13021 aacggttaca ttttgctgaa gttttgcaac attctcccaa tgctccgata aactaaactc
    13081 ggtttctgca ttatcccgaa tatggcttgc tccaatgcaa tgcgtgccgt aggctgacat
    13141 tggcgttaaa taaccatcat aacaaagcac acacttcagt ttttgtaatt cgcttgtagt
    13201 cggaatttgg ctcacttgcc ctcgtaccgg atacaacgga atgccgttcg cttggctaaa
    13261 ttcattcaac gtatgtccat ttgccagcac aaccgcttga tgtcgaaccg tttctcccct
    13321 cgtctgccat tgccacattc cattagaaaa ggttaaatgc tcaactttgt gattcagtac
    13381 aatcttcaac cctttctgct ccagccaagt aaagccattt ctaacaagtt gtaccggtga
    13441 aagccaacca gcttgcggaa taaatgcccc gctgtttggc acgcttaaac ctaatttttc
    13501 acttaattct gcctgtgaac aagattttaa taaggtgtca tcagccgtct gctccaccat
    13561 tttttccagt tttttagccg ttttctcgtt ataggcgtaa agcactaccc cgcttaaatt
    13621 atgctcaaac tcaatgttgg atttcagttg ttgcaagcgt tgcaatgcat aatcaaaact
    13681 atggatataa aactgtacat ttcgctcgtc atcatcgctt aactgtgggt aaatcgcccc
    13741 ttgtaaattt cctgaagcat ttattgccaa ggtttcatct ttgcaataca gcgtgacttg
    13801 cttgcctttt tctaacagcg ataacgcaac gaagaaactc gctactccgc caccaataat
    13861 tgcaatgtca tcagcggttt catttttggc ataaaaatag gggtaattat gctcggaaac
    13921 ttggctatct aacggtttct cgccccaaag catttctcgt tttttgccaa atcctttgcg
    13981 ttttttcact gcaaaacctg cggcttccag ccctcgtctg accatacttg aagcggtaaa
    14041 agtagcaaaa ctgccgccat tggcacttag tcgaaacatt tgcagatata actgttcgtt
    14101 ccacatttct aggtttttat caggcgaaaa gccatctaaa aaccaagcgt caatcgtgcc
    14161 gctataaaga tcgcctaatt ggggtaagtt ttcagcaatc tcaccgaacc ataaatctaa
    14221 ataaacctgc tcaaaatgat aacgttggca acctatttgg cgaggctgcc aacaagcggt
    14281 taaattttca gataatgttg caaattgcgg atagcgttgg tgaatatcag ctaattggct
    14341 ggccgtcaga ggaaatttct caaatgagat aaaatagagt cgttttagtt tactttgcgg
    14401 aaatgctgcc cgaaactgtt ggaatttgtc agcaacggct aaaaaattca agcccgtgcc
    14461 aaagccggtt tccgcaataa caaaagcctc tttcgggtga gattgccact tttcccacag
    14521 ttggttacct tcttgaaaca catagtaact ttccgccaaa ccatcttggg tagaaaaata
    14581 aatatcatca aattgctccg acaccggtgt atctgcatca ttaaatgtaa gtgtcgcaaa
    14641 agtcagttta cccatcatat ccccttaaaa acaaaacacg gaaaacccca agattttccg
    14701 tgtttcaacc agttcaatag taccaatatt agaaaatgtt gctggcaaaa ataacgatca
    14761 taccaagtgc gcctacaacc gttagcattg aataaccaaa agtacccatt ttacaatcct
    14821 cattgttaat tatgattaaa acggctttat tctagcataa tttccatcgc tttgaatgcc
    14881 tatgcttgaa taattttgcc aaaacaagcg gtcaattttt gtaaatcttt tacgcctttg
    14941 gcactttcca cgccagaatt taaatctaac ccgacacagc cttgagcaag ggcttgctca
    15001 atattctcag tgccaatgcc acctgccaat aacgcttttt gttttaaggt ttctggaatc
    15061 aacgcccaat taaaggtttt gcctgtgccg ccttgctgat tgcctacttt gctgtctaat
    15121 acataacgag caatctgtgg attatcgtta aattctagat tttcaacctc aacatcaacc
    15181 gataaggctt tccagatttg agttttacta cctaatttct ctgccagttc tgcaatgtat
    15241 tgctcatctt ccgagccgtg caattgaact gcaaataact caagctgttt tgccattttt
    15301 tccacaaatt cgaccgcttg attttggaac acccccacat aacgcaacgg tgcattcacc
    15361 accaattctt gggcttggcg aagtgaaagc tggcgaggcg agccttcggc aaaaattaaa
    15421 ccgccatata atgccccttg ctcataaacc gctttcacat cttgcacacg ggttaagcca
    15481 cacactttgt tttcaccaaa aatcaccgcc cgcaccgcat tattgagatc ggcacttccc
    15541 attaaactgc tgccgattaa aaaagcatga acatacggct taatgttttt cacttgctgg
    15601 tgatcgttaa tacccgattc tgaaatcaaa cagacatcag ccggaatttg agcttggtat
    15661 ttttccacca aacgcacaat gcggttcata tcaatcgtga gcgtgtgcaa atcacggtta
    15721 ttaacgccaa ttaccttcgc ccctaaggct aaggcacgtt caaattccgc ctccgtgctg
    15781 gtttcagtca aaacgcccat tcctaactcg tgagccagtg tggcaagttc acggtaggtt
    15841 tcatcattta ccaccgataa catcaataaa atcgcatcag cattataaaa acgggcaagg
    15901 taaacctggt atgccgaaat cataaaatct ttacacaaaa tcggctgtgt ggtttggcgt
    15961 ttgacttgat cgatataacg gaaatcgcct tgaaaatatt gctcatcggt taaaaccgaa
    16021 atcgccgcag cgtaattttt atacacttgg gcaatactgt ctaaatcgaa ctcagcacga
    16081 attaaccctt ttgacggtga agctttttta cattctaaaa tataagctgg ttcttggtgt
    16141 gtgcctttgg caagagccgc atagaaatca tggtcgcttt ttacaatttt gtgctgaaat
    16201 tcacttaacg gaaaggcttg ctctttttgt gccacccaaa tggctttatc ttgtacgatc
    16261 ttttgtaaaa tcgtcggttg gtttggttga gcgttatctt gaacgatgtt ttgcatataa
    16321 attcctagag cgaaatcggt ttgaatggta aaatctgccc ttatttttac ccgaaaaagt
    16381 ctcatttcac aagcaaaact aaaatgaaat cacaagttat acagcattta tcttatttag
    16441 aaatcgccct gagagttaat caactttggg aggcgacacc accaagccct gaagccttag
    16501 ccaatgagca acctttctgc gtggaaacct taaccccaac ccaatggcta caatggattt
    16561 ttattcccag aatgcgggcc attttagatg caaatgccga tttacctcgc aattttgcaa
    16621 tcacccctta tttagaagag gcattgaaaa acgaaggtta tttacaagcg atttgtgaac
    16681 cgctattagg tttggaaaag ttgttgaaag attaacttct ctctcagttc ttttattaat
    16741 ctgacaaatt cgttgatagt gccagcgtcc acgctggtac taattttaac ggttaattaa
    16801 tcaaaatttg gcacaagcga ggacgcttgc gccatcatag agatttgata aattatactt
    16861 aatgtattat gaccttagat attttatacc aagacaactc gcttatcgcc atcaacaaac
    16921 ctgccggagt gttggtgcat cgttcttggt tagataaaca cgaaacggtg tttgcaatgc
    16981 aaaccctgag ggatcaaatc gggcaacacg tttttccgat tcaccgcctt gaccgcccaa
    17041 cctcaggtgt attgctgttt gctctcaaca gcgaaaccgc ccgaataatg agcgagcagt
    17101 ttgaacaaca cctagtacac ctagtacaaa aaacttattt ggcggtggtg cgtggctatt
    17161 tacaaggttc ggcacaaatt gattatccgc tcaaagtgat tttagataaa attgcggata
    17221 aattttctca ggaaaaagag gctcaagcgg cgattactga ttataaaggc ttagcaacgg
    17281 ttgaaatgcc ttaccctgtc ggcaagcacc aaacctctcg ttatagtttg gttgaactta
    17341 gccctaaaac cgggcggaaa catcagcttc gccgccacct gaaacacctg ttccacccga
    17401 ttatgggaga cagcaaatat ggcgacttac accaaaaccg tgctttagtt gaaaaatcag
    17461 gcgtaagtcg tttaatgtta cacgcccata aattgcaatt tcagcacccg aaaaatttgc
    17521 aaaaaataga gataattgca tcgcttgatg agcaatggca acgcctcttt gcattttttg
    17581 actggaactt tactcaatat tattagacaa aaaagaggat tgaatggata attcactttt
    17641 atcattgaca cacgagcaac aacaagccgc agtagaagaa attcaaaaac tgatggcaca
    17701 aggcatcagt gccggagagg caattcaaat tattgctaat caattacgtg acaaatatca
    17761 aatattggag aaatcaaaca atgaataaat tatggacagt gcttgcccta acaataactt
    17821 cccactatag ctttgctgcc gctgaaaaaa tagtcactaa agatttaccg gcagaaggaa
    17881 aacctgcagt cgtgctacag gtttttgatg aaagtgaaaa aattgcaaaa cctattaagg
    17941 gaaataagct ctttattagc aaaaaacaaa caaggctttg ctggcacagt attaatcttc
    18001 ctgtacaaaa taaagttact attgcagaag ctttctatgc ccctgctgca atgaaattag
    18061 cttctcccgg ctctaaaatt aattcttctg cagacaagaa aaatcatact atcattactg
    18121 aaataaacct tgcaaataat caagtattaa atcgttgctg gggttttgat aaaactgacc
    18181 ctgtcggtaa atacaaaatg gaaattcaaa ttaacgatca cattttcaaa ggtttagaat
    18241 ttgaaattgt aaaataacct aaaagccaca gagtaacacc ctgtggcttt ttgctaaatc
    18301 attgttttta aattggttaa attgtgcagc aaataatctt tactcttcac aaaggctctc
    18361 gcctgttgcc agttgctaaa ttgttgctga gtgcattgat taaaacgtac cagcacttcc
    18421 aagctttcat tgccgacaca aataaaatca gctaataatt gggttaattt ttcactgttt
    18481 tcaccatcca ttgcagttgc aattttctgc tcccatttaa ccgcttgtcc gagcaaataa
    18541 ccccgctggg ctttgcttaa attactcaac cacatcccat ccgcttttgg cattgcctca
    18601 accaaagtaa ataagtcgcc tagatttcct tgcttgattt caaactccaa ttcacaaatc
    18661 ggctcttcac caaaatgatt tttaatgatg ccctgatcta acgctacctc aatgtcagac
    18721 atccccactt gcaccaacca agttttacga gtgaaatcgg tgctgaatat cgcttgcaag
    18781 ctttctgcaa tctgctctga attttcaaac ggcaactggt atttttccac taatgtttga
    18841 aaatccggct ggctattggg taaagctaaa ttatattccg gacgaatatg caaaccgcct
    18901 acaatttccc cttgtgtttt taacgtgatt tcatattgtt gattcacaga acgcacccgc
    18961 agccccattt tttgcgtggc aaaaaattgc tcgggcgtat cataataggt gttgcctaac
    19021 aattccgttt gatgagcaag cacagggaat ggcgaggttt gattcaagta gttttccact
    19081 aacgccacat tctgctgttc caacattatt ttcagttcga tttctgcttg tttttggttt
    19141 tccatttcac acgcccctgc aacgttgtat aatcaagcgg ttattttatc aataaatttt
    19201 gcaaaatgtt ttcaaaaatt caccataaac tgaataactt tgtccagcgt ggactcgaca
    19261 accatttacg cctcgccgtt accggcttaa gccgtagtgg caaaacggca tttattacca
    19321 gcttggttga tcagcttttg catatcaaca aaggcggtaa ttcgcattta aacctgtttg
    19381 cgcctgcacg ccacgggcaa attctatcgg taaaacgcgt tgagcaaggg gatttaacta
    19441 ttccccgctt tgaatatgat aaaaaccgcc aaagccttga aaatcaacca cctcaatggc
    19501 ctgaatccac cactggcatt agcgaaattc gccttgcgat tcgctaccag cggcaacatt
    19561 ctctgctacg tcatattaaa gaaaccggca cgctttattt ggatattttc gattacccgg
    19621 gcgaatggct gttagattta cccctgctct ccctttccta taaagaatgg tcgcaaacgc
    19681 aacaaaccat acataaagat gagcgtgcag agcttgccac accttggtta caagcggtta
    19741 aaaaactcga tctttttgca aaaaccgatg aaaatttact ggcagaattc agccaacaat
    19801 acaccgatta tttgctcgcc tgcaaagctc aaggaatgca atatattcag ccggggcgat
    19861 ttgtgttgcc aactgaaaat gccaaaggtg caccggtatt ccaatttttt ccgttattag
    19921 atttaagcga agctgagtgg gaaaagttgg aacaaagcga cagaaacagt attttccata
    19981 ccctcaaaaa acgctatgag cattaccaga aaaaaatcgt caaaccgttt tatgaagatt
    20041 acttctctca atttgaccgc caagtgattt tggcagactg cctcacaccg ttaaattatg
    20101 gctataacga atttatggaa atgaaattag ggttacagca actgtttaaa catttccatt
    20161 atggcaatcg ttcgctattt caccgtctgt tttcgtccaa cattgataaa ttgctattta
    20221 tcgcaacaaa ggcagatcac attactagcg accaagtgcc gaatttggaa agcctaatgc
    20281 gacaattagt gcaagaaggg ggaagacacg cagaatttga tggtatcgaa accggctatt
    20341 tagccatttc ctcgattcaa gcaaccgatg cggtgaaagt gactcagcaa gataaaatca
    20401 ttaaagcgat aagagggatc cgttccagcg atagaaaaca agtgacactc taccctggca
    20461 gcgtgccaag tcgcataccc gataaaaatt actggcaatt taaccgtttt gaattcgacc
    20521 aattcgagcc caagcaactt gattatagcc aagcgattcc acacttcaga atggattcgg
    20581 tgctacaatt tttattggcg gatatgtttg agtaaaatct tgttgcatat ttccattaaa
    20641 ggtataaaat tttatacatt atgaatactg taatttccca acgaaaacca attcactggg
    20701 ttggatcaac cttagatgat attcgtgaat ttccggataa cattaaaaga gaactcggtt
    20761 ttgatcttga tttagttcag caaggcttat taccgaggga ttttaaagcg atggcaaatt
    20821 tgggttcagg cgtaatggaa attcgagtaa aagatccctc aggggctttt cgcttagtgt
    20881 atttagctaa atttaaagat gcaatttact gtttacacgc tttccaaaag aaaacgcaaa
    20941 aaacagcccc taaagacatt gctgtcatta aagcacgcta tgctgccgta aaggagttag
    21001 aaaatgaata atattgatac taaaattcgc catactacag aagctcaggg taatgttttt
    21061 gaagatcttg gtttccctat tgatgaagct caaaaattga aatctgccag tcagcaactg
    21121 attgaaacta aactgatgct aatgaatgaa atgagcaact ggattgataa aaataatctc
    21181 aaacaatcag aagcggcttc tattctaggt gttagccgcc ctcgaatttc tgatatggtc
    21241 aatggcaagt tagaaaagtt taccctagat accttagtca cttttgttgc aaaaaccggc
    21301 aaaacaatcc aattgcaatt atcctgatat ttgcaaaatt ttactcaaat tcaaccgctt
    21361 gttgctttta tcattcacta acaaggttat ttcaagtaaa attgtgacta attttttatt
    21421 aataaacaca aattatggca aaaaaaccta aagttgcatc aaatacgatt gcgttaaata
    21481 aacgtgccag acacgaatat ttcattgaag atgaaattga agccggctta gagctacagg
    21541 gctgggaagt caaagcattg cgtgccggaa aaggcaatat cagcgatagc tatgtcatct
    21601 ttcgccacgg cgaagccttc ttattcgggg caatgattac gcctttgaat atggcatcaa
    21661 cccatattgt cagcgacccg acccgcaccc gcaaacttct actgaataaa cgtgagttag
    21721 actcactgtt cggtaaagtt aatcgtgaag gttataccat tgttgccacc tcaatgtatt
    21781 ggaaaaatgc gtgggtgaaa gtaaaaatcg gcttagccaa agggaaaaaa ctgcacgata
    21841 aacgtgaaga tattaaagac cgtgaatggc aagtggctaa acagcgtatt atgaaaaacg
    21901 ccaatcgtgg ctaaatgaat aattaccctc tccccttgtg ggagagggac agaaaaattg
    21961 cgttcagcaa tttttcaggg aaagggggat ttgtaaaagt tcaaggaaaa acaacgcttg
    22021 ccctctctct gaaaaatatt tctgaacgaa atatttttcg gtctctctcc cataaaggga
    22081 gagagtgaaa cacaaattta aactaaggaa catacaatga tcgaccaaaa cctacttcgt
    22141 accaatttag aagacgttgc tacagctctt aaaatcaaac gtaattttat tttagatgta
    22201 gagcgagtaa aaacccttga agaacagcgt aaaacgctac aagttaaaac cgaaacctta
    22261 caagcagaac gcaacactcg ctccaaaaac atcggtgcgg caaaagctcg tggcgaagat
    22321 atttcagctt tattagccga agtagattca atgggcaacg aattagacac ggcaaaagta
    22381 gaattggata aagtacaggc agaaatccgt gagttgttgc tttctgtgcc aaacttaccg
    22441 gcagatgaag taccactcgg taaagacgat agcgaaaact tagaagtatt acgttggggc
    22501 gaaccacgtc aattcgactt tgaagttcaa gatcacgtta cccttggcga aaacttaaac
    22561 ggtttagatt ttgctgccgg tgtaaaatta accgccagcc gttttgtggt aatgaaaggt
    22621 aaacttgccc gcttacaccg tgcattatct caatttatgt tggatttaca cactgaacaa
    22681 cacggctatg tggaaaccaa tgtgccattt ttagtcaatc acgacactct atacggcaca
    22741 ggtcagctac caaaatttgg cgaagattta ttccatactc aaccattaac agggcaagat
    22801 ccaaacgagg tgcaacgccc attcggtttg attccaaccg ctgaagtgcc agtaacgaac
    22861 ttagtgcgag atgaaatcat tgatgaagac agcttaccac tgcgttatac cgcccacacc
    22921 ccttgtttcc gtgcggaagc cggttcttat gggcgtgata ctcgtggttt aattcgtatg
    22981 caccaatttg aaaaagtgga aatggtgcaa attgtcgccc ctgaaaaatc aatggaagcc
    23041 ttagaagaat taaccggtca cgcagaaaaa gtcttacagc ttttaggctt gccataccgc
    23101 aaagtgctac tctgcactgg tgatatgggc tttggtgcag caaaaaccta cgacttagaa
    23161 gtttggctac cggcacaaaa cacttaccgt gagatttctt cttgctcaaa tatgtgggat
    23221 ttccaagccc gccgaatgtc tgcacgttgt aaagctaaag gcgacaagaa aactcgcttg
    23281 gttcacacct taaacggctc aggtttagcg gttggtcgca cactggtcgc tgtgttagaa
    23341 aactaccaaa atgccgatgg ctctattact gtgcctgagg tgttaagacc ttatatgggt
    23401 ggtttggaag taattaccgc ttaagattaa taaatgaaac caatctcaga aatggggttg
    23461 gtttttttaa taaatcttat ccctaatctt tttcaggata attcataaaa atttcagtaa
    23521 ctactcggcg gttttgcact gtatctaaac gaataggatt tttcattctc cctaaacgaa
    23581 atgcaataat ggtgactttt ttcggttcat ctattttatc taattgatag aataccatta
    23641 tttcccgttg ataaaccgct cgctttctga aacgtaaatc ctttcgaaat gcgacacctg
    23701 cttttggata aaactgtaaa ccattgatga tattcgtttg agtatgctcc gaaaataatc
    23761 catagaaaat aaactctaat agattatttt taaaatcaac actaaccatc taactgctcc
    23821 caagcagtta aatctcctcg tgataaacgt tcagcaatat cagcataaaa ttgtttcggt
    23881 acttcccttt ttacttggta ttgagctgat tgttcttcta ataaatgttc ttctatcatc
    23941 ttgatttctt ctgttgtcca ctcttcatct tctttatgta caacaaaatc ggtatctaca
    24001 atcacaatag acatacctag ctccttcaag tactggttat atattctgta ttttgcctgt
    24061 tctaaattca gctgtctagc ttttctgtta ctcacaattt gcaaattttt catcaaattc
    24121 caccgcttgc cattcaaaaa aaggcgtttt tgcggtatcc tatcggcaat tttttcagtt
    24181 aaatttaaag gttaaatttt atgcaacagc agtataaccc aagtgagatt gaacctaagg
    24241 ttcagcgtta ttgggcagaa aataaagttt ttaaagcagt taaagacgtt accaaagaga
    24301 aatactattg cctttcaatg ttgccttatc cgtcaggtaa gctacatatg gggcacgttc
    24361 gtaactacac cattggtgat gtagtgtctc gttatcagcg tatgatcggt aaaaatgtat
    24421 tacagccgat gggttgggac gctttcggtt taccggcgga aggtgctgcg gtgaaaaata
    24481 ataccgcacc ggcaaaatgg acttacgaaa acatcgaata tatgaaaggt cagcttaaaa
    24541 tgttgggctt ctcttatgac tgggatcgtg aagtcaccac ttgccgtccg gaatactaca
    24601 aatgggagca atggttcttc acagaacttt ataaaaaagg cttagtgtat aaaaaaacct
    24661 caaccgtaaa ctggtgtccg aatgatgaaa ctgtgcttgc caacgagcaa gttcacgaag
    24721 gttgttgctg gcgttgtgac accccagtgg aacagcgtga aattccacaa tggtttatca
    24781 aaatcactga ctatgctgaa gaattactca atcagttaga taatctccca cagtggccgg
    24841 atcaagtaaa aaccatgcaa cgcaactgga tcggtcgttc cgaaggggta gaaatcacct
    24901 ttaaaattgc cagttcaaac gtagaattac cggtttacac tacccgtccg gataccttct
    24961 tcggcgtaag ctatgtggcg attgctgcgg ctcacccatt agcagaatta gctgcacaaa
    25021 ataacccggc attggctgaa tttatccgtg aagcgaaaaa caccaaagtg gcagaagcag
    25081 aattagccac catggagaaa aaaggaatgg caaccggctt gttcgccatt cacccgttaa
    25141 caggaaaaga agtaccggtt tgggttgcta actttgtgtt aatgcactac ggtacaggtg
    25201 cggtaatggc ggttccggct cacgatgagc gtgactttga atttgcacaa aaatacgatt
    25261 tgcaaattaa tcaggtaatt caaccgcttg atggctcaga gtgggatttc agcaaagccg
    25321 cttacaccga acacggtaaa ttaatcaact ctgccgagtt tgacggcttg gaatttgatg
    25381 tggctttcac tgcgattgcc gataaattag aggcaatggg cgtaggtaaa cgccaagtga
    25441 atttccgtct gcgtgactgg ggtgtttctc gtcaacgtta ttggggtgca ccaatcccaa
    25501 tgatgaccac agaagagggc gaagtggtta ccgttccatt acaagattta ccggtgattc
    25561 tccctgaaga tgtggtaatg aacggcgtgc aaagcccaat caaagccgac ccagagtggg
    25621 cgaaaaccac ttacaacggc aaaccggcat tgcgtgaaac cgatactttc gataccttta
    25681 tggagtcctc ttggtattat gcacgttata cttgcccaca atatcacgaa ggaatgttag
    25741 attcagacga ggcaaactac tggctaccgg tcgatcaata tatcggcggt attgaacacg
    25801 ccacaatgca cttgctctac ttccgtttct tccataaatt gttgcgtgat gcgggtattt
    25861 taaattcgga cgaaccggcg actaaactgt tatgccaagg tatggtgctt gccgatgcgt
    25921 tctactacac cagcccaact aacgagcgta tttgggtcag cccgacacaa gtcaccttag
    25981 aacgtgatga gaaaggtcgt atcatcaaag caaccgatcc acaaaggcgt gagctggttc
    26041 acagcggtat gactaaaatg tcgaaatcaa agaacaacgg tatcgatccg caagaaatgg
    26101 tggaaaaata tggtgctgac acagttcgct tgtttatgat gtttgcctcc cctgcggaaa
    26161 tgacattaga atggcaagaa tccggcgttg aaggggcaaa acgtttctta ggtcgtgttt
    26221 ggaatttagt ttatagctat gcccaaaatc cggcaacgac tgcattagat gtgaatgcct
    26281 tagacaagga tcaaaaagaa cttcgccgtg atgtacacaa aacgattgct aaggtgagtg
    26341 atgatattgg tcgtcgtcaa accttcaata cagcgattgc tgcggtgatg gaattgatga
    26401 acaagctcac caaagcccca cttgaaaccg aacaagataa agccgtaatg gcagaagctt
    26461 taagtgcggt ggtgcgtatg ctttacccaa tcacgccaca tatctgcttt gagttatggc
    26521 aagtgttagg taatgaacaa accatcgatt ttgccccttg ggtacaagcc gatgaatccg
    26581 caatggtgga agatgaaaaa ttagtggtag tacaggtcaa cggaaaagtg cgtggcaaaa
    26641 tcactgtttc agctactgct acggaagatg aagttaaagc tatcgctaaa gccgatccaa
    26701 acgttgctaa attcttagat ggtcagcaga ttgtaaaaga aatctacgtt ccatttaaaa
    26761 tgttgagctt tgcggttaag gcgtaacaaa cacactctcc cttatatggg agagagaccg
    26821 ataaatattt cgtgcagaaa tatttatcag agagagggta caagcggtta ttttcttgga
    26881 aaattttgca aaaaatagcc ccctctccct gctttttctt ctcaacgaag aaaaacctgt
    26941 ccctctccca caaggggaga ggggaataaa caaggaaatc tcattatgat taaaaaactc
    27001 tctctcatcg ctgtttttgc tcttaccgcc tgcggttggc actttaaaaa caatgaggta
    27061 ttacctgaat cgttcagaac attaaccttt gaaagtgcag atcaacacag cgaaatgtct
    27121 cgaattttac gcaatcagtt acaactaagc gatgtaaaat tagtgcctag cacggctaat
    27181 gtggcaaaat tacgtttggt ttcaacctca acaaacagca aagtggtttc tgtgtttaaa
    27241 caagctcgtg aagcagaaaa aatcttaacg ctaaacgttg atgcgattgc cgatattcca
    27301 aataaagggc aatacccttt agaagtttcg gttcatcgta ctttctttga tgactctcgt
    27361 gcagctttgg caaagtctgc tgaaaaagag atgattatga aagatatgta tgaacaagcc
    27421 tctcgccaat taattatcaa aatggcgggc ttaaaaaaag aactctcaaa ataatcattg
    27481 taggggcgaa atatgtttcg cccattgttt atctgtatgc aaaaaatctt tccggaaaca
    27541 cttcaatttt cattaaacaa aggactacag cccttttatc tattaacagg gaatgatctg
    27601 ctattggtga atgaaaccaa agatgccatt attcacaccg cccgtctcaa cggttttgat
    27661 gaaaaaaaag aagttgaaat caaaaacgat actaactggg aagaactttt cgaagcagct
    27721 caatcaatgg gattgttttt tgcacgccaa attatggtgc tgaattttcc ggattccccc
    27781 acagcgacac agtttaaaaa actggctgag ctttgtgcct ttattcatag tgatttgctc
    27841 tttatcctgc acttacctaa attttccaaa acaatgaaaa aacaggcttg gttcacgcaa
    27901 attgagctaa atctcgtgca aattaactgc caaacaccgg aacttagcaa acttccacaa
    27961 tgggtcagtc atcgagcaaa agcgatgaat ttgcaaattg aaaatgaagc aaaccaactc
    28021 ctttgttata gctacgaagg caatctactg gcgcttaaac aggcattaca actgctacaa
    28081 ctcaatgcaa ctgatggaaa aatcacgctg acaaaagccc aagaagtggt tgaacactcc
    28141 gcccaattta ctccatttca atggattgat gcattatttg aaggaaaaat ccaaagagct
    28201 caacgcattt tgtaccatct gcaaaatgaa gaagtacaag cggtcgtttt attaagaatt
    28261 gtgcaaaaag agttgatgat tttactcgaa atcactcgca acccaaccgc agtcgtttcc
    28321 agcgaacaat cactttttat cggtaattta cgaacagaat ttgaccgctt gaaaatttgg
    28381 caaaaccgca gaccttttta caaccagatc actcaacgac tgacttacca aaaactttac
    28441 gccctaatcc aacaactggc tgaattagag cgtaaggtga aacaagaatt tagcgatgat
    28501 atttggcaag aattagagcg tttttccgct caatttacct aactaatact tttctaaatc
    28561 ttcgctaaac aactccgctt cttcactggc gatagagtgc ttttctgccg cccaatcgcc
    28621 taaatcaata atttgacaac gctcgctaca aaacgggcgg tatttacttt ctttactcca
    28681 caccacttct ttttcacaag tcgggcagtt tacaatagtt tctggcattc tttttccttt
    28741 tttgctaatg ctaagtattt ataatgtaag gcttgaacct gctctttaat taaaagcaag
    28801 ccctgttcaa atggcaagtt attttcaatc acatcatcag cataacttaa tctttcttca
    28861 cggctgactt gggctgccat aatattttta atggtttcaa ttttactgtt atcacgtttg
    28921 gttgctcttt ccagttggat ttcaggagaa acatcaacaa ccaatatacg atcacaatat
    28981 tcggtgagct tattttcaat taaaagcggc acgacccaaa tcacataaca agcggtcgat
    29041 tcttgcaatt tttttaccat ttcttctcga atggcggggt gaagtaaatt attgagccac
    29101 gttttttcct gttcattgtt aaacacaatt tggcgaagtt tagtgcgttc taatgctttt
    29161 tcagcggtta agatctcttc accaaaatgc tctacaatct tggctaaaag cggtgtaccc
    29221 ggttcaacaa cttggcgagc caccacatca gcatcaatta cctctactcc aagagctgaa
    29281 aataaatcag acactgtggt tttgccactg cctattccac cggttaagcc tacaacgtaa
    29341 gtcataaaaa ttgattcctc aaaataaaaa caaaccaatt ctagtaatta atccctctgc
    29401 tttcaagcat tagcaccagc aacatcgctg tgctaataaa cggaataaac gccaattttg
    29461 ctaatttctg ctttttcatt agccaataag ccaagtaata accaatccct agcaggctgg
    29521 cggttaatat caataagagc attttttcga gccgaaagag tggggataac gcaaccaata
    29581 acaacatatc gcccgagcca aatgcctcct ttttaaacat aagctgtgaa accaagccaa
    29641 tcaacaggca aaaagcaagg gtaaaggtaa aagtttggtg ttggaaatcg gctaaactct
    29701 cccataacac caacaaaaat ataagcacga ggtagcgaat atccgttagg taatagcaca
    29761 tatccagcag tgataaaaaa cagagcagaa taaaaatcgt gccgataata gggctttccg
    29821 agcagagcat aatcaatgga aaaaggagaa aaaatagatt tgccgatcgg ggttgtttcg
    29881 gttgtagcac cgattgagcc aaaaactgtt gctcggttaa gccaatattc actaatgaag
    29941 ttgtttcttg gtaaatttgg cgattgactc gaatggcaaa tcgagggatc tccgctttga
    30001 gccaaaccgc aatgaagagg gaaaacagta ttaacatcgc tactccacca aagcccccat
    30061 atcaaaaatc ggtaaataca gcccaacaat aatagtgccg acaatcacgc ccattatcaa
    30121 cattagcatc ggttctaata gctgagacaa aatatcaatt tggtaatcta atttttgttg
    30181 gtacatctca ctaatatgct cacacatttt cgccacattg ccacttttct ccccaacctc
    30241 aagcatttgt gccatctcag caccaaacac attcgggttg atcccttgtg aaaatttgta
    30301 gccttgttgt aacaaattaa gcatagtgcc aatttcttgc tgtaaaatcg ggtcatcatt
    30361 tttctcggat aaaaacgacc tcaaggcaac atcaagcgga atatgagcat tcagcattaa
    30421 ggcaatattt tggctgaaaa agataatgcg agattgctca ataattcggc taaacagtgg
    30481 cattttagcc catagagcca ttttccactt tgcgactaac ctgctctttt ttgcaaaaaa
    30541 caggtaaaaa atgaccgcta gtagtaacgt gccaagtaat actgtgcctt gctcaatcaa
    30601 gcattcggaa agggtaaata aaatatcggt aatgaggggt aaagttttgt cttttgagcc
    30661 ataaagttgg gcaaactgcg gtacaatcaa aaccaatagc ccgatagata aagcgagcga
    30721 aatcagcaac acaatcaccg ggtagaacag gattttcttc acttttttcg ccaatttttc
    30781 caatttcgct cggctttcag ctaaattagt cagcataatg cccagttttc cgctttgttc
    30841 gcccattttg attagctgaa tttcctgatt ggtcacaaat tcacccaatt tctccaacga
    30901 ttgtgaaaaa gcatagccac tttcaatatg ctgaatcagc tcattaagcc atagataaag
    30961 gcggatattt cggcagtttt gcaacaacat agataatgcc tgttttaacg gcatggcaga
    31021 attaaccaac aatgcaagct gtgatagcaa gctattcacc tcttcttttt tcgggtttgc
    31081 tgaaagcaca aaatttcggc taatccgaat atgctgataa ccttgtgcca gcaaaaggtt
    31141 ttccaacatg tctcgattcg ttgccaaccg cttgccccgc tgtttttgcc caaatcggct
    31201 ctgagcttgc caatgaaatt catagatttt cgtcattgcc tagcaccctt aaaatttccg
    31261 cctgattggt ttttccttcc gtcaattttt cttttgcact gtcggcaagg gttttaaaat
    31321 ccaaacaagc ggtgtttttt tcaaaatttt ttgcagatcg gtttaagagt tgatataccc
    31381 caattcgccc tttataccct tgataacaat gctcacagcc tgccccaccg catttcacac
    31441 acactcggcg taacaggcgt tgagcaatca cgagtagcaa tgaattttta agttcatact
    31501 cttttatgcc gagctgtagc aaccgttcta ccgctgaagg ggcatcattg gtgtgcaaag
    31561 tcgaaagcac caaatgcccg gtttgtgccg cccgtagtgc catttctgca ctctcttcat
    31621 cacgaatttc gccgagcata ataatgtccg gatcttggcg tagaaaggtt cttaacagtt
    31681 ggctgaaatc taagttaatc cctcgattca cttgggtttg gataattccc tcaatctcaa
    31741 tttcaatcgg gtcttcggca gtcaaaatat gcttttcact gctgtttaaa tggcttaatg
    31801 cactgtaaag cgtgatgctt ttaccgcttc ctgtcgggcc ggttactaaa atcaatcctt
    31861 gaggctgact caaagcattc agcaaattgg ctttctgagt tgggttaaag cctaaatcta
    31921 aaaaatcaaa atgggttggt ttattttttt gtagccgtag caccactttt tcgccgaagt
    31981 gcgttggcaa ggtagaaaca cggaaatcca gcgtttcagc taacagtgtt ttgaaatgaa
    32041 attgtccgtc ttgtggcaaa cgagtctcgc tgatatcgag cttagccaat aatttaaccc
    32101 gtgaaatcaa acggctggat aaactactcg gcaggctttt ataaatatgt agcacgccat
    32161 caattcttaa ccgaattaac aatctctctt tttgtggttc aagatggata tcggaagcgt
    32221 tctgttgcaa acagaactta aacaaattct ctaaaatttg gatgatcgga tcatttctat
    32281 ccggctgctc ggtattctcg gaaaaaggat aaagcggatt ttcttcataa atttcactct
    32341 gcgggctact ctgttcaggc gaaagggcat tgagcaaaaa ttttaattct tcggaggaaa
    32401 tcaaaacagg ctcaatctgt ttgtggtaga taaatgcaaa aatctcgcag gcattaagat
    32461 tttgcatatc atcaattccc agccaaagct gttctgctgt ttcttgcagt ggaacggcta
    32521 agtaacgcaa caaaatctgc ttttcattac aatttttctg ccattgttct gctgaaatct
    32581 cgatgaatct ttggctgttt aagtcggtta ccgaatactc cattttgatt tcctcacctc
    32641 aaattagccg tttggtgtaa cagttgtgct acagaaatta gctggaaata ggctcgtatc
    32701 attgccacta caacttgccg tccaactaat cgtattattt gagaacgacg gtgttaaggt
    32761 atagccataa ccattcagag agcctttgcc ggttaccgta atcacgcctt ttgttaccgc
    32821 aattgagttt aggtatttag tggtattact actggtttta ttcgcctgaa tcccattcgt
    32881 gccaccggag cagttatcca gcccgccact gttgtaaata cagagttcaa cgtctgattt
    32941 atacgaagca gaggcttgca ataactccga taacgccgcc ttttgggtgt atgagttata
    33001 ggaagggatc gcaatggtgg caagaatggc aataatcgca atcacgatca tcaactcaat
    33061 tagggtaaat gcccgatgca gttggcgaat gccaagcggt cgaaaatgta caattttttg
    33121 catataaatt tccttataaa ttgcaccaac aaattgtggc gaatcaagtg tgcaaatttt
    33181 ttgccggctt tgcgaccggc aaatgtcaat ttttcgatgc agatcgaaaa aataaatttt
    33241 tcatctgttt atccatacag ttttttgata gaatttgcta aatttcgtca ctcaaggata
    33301 aaaaatggca aaagcaccta aaaccgctta tgtttgtaat gattgcgggg ctgaatattc
    33361 ccgttggatg gggcaatgtc gggaatgtaa gtcttggaat accatcagtg aagtgcggtt
    33421 gatttccagc aaagaaaccg ccaaatctga ccgctttagc ggctatgcag gtgaaacttc
    33481 aggcaaagta caaacgctgt ctgacatcag cttgcaggaa gtgcctcgtt ttagcagtgg
    33541 ctttaacgag ctggatcgtg tactcggtgg cggtgtggta ccggggtcag caatactgat
    33601 tggtggccac ccgggggcag ggaaaagtac gttattactg caagtaatgt gcggtttagc
    33661 ccaacatcta ccaacgcttt atgttaccgg tgaagagtcg ttacaacaag ttgcaatgcg
    33721 ggcaaatcgc ttaggcttac caacggcaaa tctgaaaatg ttgtctgaaa cctctgtcga
    33781 gcatatttgc aatattgcag accaagaaaa accgaagatt atggtgattg actcgattca
    33841 agtgatgcac ttgtcggata ttcaatcctc accgggcagt gtttcacaag tgcgtgaatg
    33901 tgcctctttc cttacccgct acgccaaaac ccgccaagtg gcgattatta tggttgggca
    33961 cgtcactaaa gatggcacgc ttgccggccc gaaagtgttg gaacacgcca ttgatgcttc
    34021 cttgctgtta gaaggcgaat ccgattcccg tttccgtact ttgcgtagcc agaaaaaccg
    34081 ctttggtgcc gttaatgaat tgggcgtatt tgcgatgacc gagcaagggc taaaagaagt
    34141 gaaaaaccca tctgcgattt ttttaagccg tagcgaagag caaacgccgg gcagttcggt
    34201 gatggtgtta tgggaaggaa cacgcccatt gttggttgaa attcaagcct tagtcgatca
    34261 ctcaatgctg gcaaaccctc gccgtgtggc ggttggctta gatcataacc gtttatcgct
    34321 attacttgcg gtgctacacc gacacggtgg cttgcagatg tcggatcaag atgtgtttgt
    34381 aaatgtggtc ggtggggtga aagtcacgga aaccagtgcc gatttagcct taattttggc
    34441 gttaatttcc agcttccgta accgtccatt gccgcaagat ttggtgattt ttggggaagt
    34501 cggcttagca ggggaaatcc gcccggttac cagtgggcaa gagcggatca gcgaagccgc
    34561 aaaacacggc tttaaacggg cgataattcc tcacggcaat gtcccgaaaa aggcaattaa
    34621 agatatgcag gtgttcaccg tgaaaaaact cagtgatgcg ttagatattc tgtataatct
    34681 ctaaaatcaa gaaccgcttg taagtctgtc ttacaagcgg tctgttttag gtaaaaattt
    34741 acgaatgtgt ggcagttggt ctattgcctt tggaaatata gtataaatta atacacacca
    34801 ccaacgcatt taagccggtg accggaatcg agccaatcag caaaccataa acaacgaaac
    34861 aggcacaacc cagcgaattc accacccgca gtttaatcac atcttttaat aaaaaagaac
    34921 aggcaactaa aatcatcgcc acatagccga gtatttcaac atagtccatt tagaacctcc
    34981 tcaaataaaa taaactgccg atattttaaa ggctgttttt ttatttgtat ctagctctaa
    35041 aaatagcaaa ggtttgcgtt cacattttta cttttaaccg cttagttatt aaacagattt
    35101 tcgttctaaa cacataaaac ggcaacggaa agggttattt tcatcaattt ctgaccactt
    35161 ttcttctact aacgcccaat tttgttcatc aaattcaaag aacgtatccc cttcaatgtc
    35221 tgcttgaatc tcagttaaat aaagtctttc tgctagtggt aaggcttgct taaacagttc
    35281 ccccccacca ataatcatta tttcagctgt atttgcaaaa tttttcgcta attcaaccgc
    35341 ttgttcgagc gattgtaccg cataagcccc ttccaccgta aaacctgaac gggaaagaat
    35401 aatattaggg cgttttggca ataacctgcc gatagattca taggttttcc gccccataat
    35461 caccggtttg ccgagcgtgt tttggcgaaa ccaggctaaa tctaccggca aatgccacgg
    35521 catttggtta tctttgccaa tcaccttgtt gattgttcgg gcaacaataa tgctgatttt
    35581 cattttttct cctgttatgc aaattggttt gattttatat caaattaagc gtgattttac
    35641 accctaaaag tgatactttt ggcaacatta tttttagtta caagtgaaca gattatgtca
    35701 aaaactatcg tgataaaatt tggcaccagc actctcacac acggcactaa aagtttaagc
    35761 cgtccttata tgttagagct ggtaaaacaa atcgctcaat tacaccaaca gcatcgtgtg
    35821 attgtggtga catccggagc tgccgctgcc ggtcgggact atttaggaca ccctgaactc
    35881 cctaaaacct tagcctctaa gcaaatgtta gcagcggtcg ggcaaagtca gctcattcga
    35941 gtgtgggaaa atttattcga tatttataat atccatatcg ggcagatgct cttaacccga
    36001 gccgatctgg acgatcgtga acgtttcctc aatgcccgtg atacccttga tgccctgctt
    36061 gcacaaaaaa tcattccggt gattaatgaa aacgatgccg ttgctaccga agaatttaaa
    36121 gtaggcgata acgataattt atcggcttta gttgcgattt tggctcaagc agatcagctc
    36181 tatttattaa ccgaccaaga aggcttattc agtgccgatc ctcgctcaaa ccctgatgct
    36241 aaattgctct cggtggtgga aaaaatcacg cctgaaatcc gccaaattgc cggtggtagt
    36301 tcaaccggtt taggcacggg cggaatgagt accaaaatta ctgctgctga tattgctacc
    36361 cgctccggtg tggaaaccat catcgcctcc ggttctcgcc caaatgtgtt agttgattta
    36421 gcaaacgggc aaaacatcgg cagtaaattt ttagtccaat ctgaccgctt ggaaggcaga
    36481 aaacgctggt tatttgctgc tccgcaagtg ggtgaaattg tggtagattt cggggcggaa
    36541 caagccttgc ttcaacataa atcattactg ccggtgggag tttctgccat caaaggcgaa
    36601 tttactcgag gtgaagtaat caaaattttc agccaagacg gcaaagcctt agcactcggc
    36661 attgcccgtt atagcagtga ggcattgctg cgaattaaag gtaagaaatc aaaagaaatt
    36721 gaatcgctcc ttggttatga atttggttct gttgcagtgc atagtgacga aatggtggtg
    36781 tattaatgga attgggaatt gatgttttag caatcttgtt tgccgttgcg acccttgccg
    36841 gctttatcga tgccatcgct ggcggcggtg gcttactcac tattccggca ttaatggcag
    36901 cagggcttcc tccggcaatg gcacttggca cgaataaatt acaggcgtgt ggcggatcac
    36961 tctcttcctc actctatttt attcgcaaaa aagctgttaa tttaaaacaa atttggttgc
    37021 taattctatg cactttttta ggctctgccg ccggtactat ttttgtgcaa atgatcaatg
    37081 tcgatttctt aaaaacattg ttgcctttct taattctgat tatcggcatc tattttttgg
    37141 tcagccctaa aattggcgat gaagatcgta aacaacgcat tagctttacc ctatttgcct
    37201 ttaccgccgc tgtcgctctc ggtttttatg atggaatgtt cggaccggca accggctctt
    37261 ttatgactct ggcatttatt ttgctgctcg gcttcaacct ctctaaagcc gtagcacacg
    37321 ccaaagtgat taattttacc tccaactttg cctcattaat tttctttacg cttggtggtg
    37381 cggtaatgtg gaaaatcggc ttaattatga tggtcgggca atttattggc ggcacactag
    37441 gtgcgaaaat ggtgatgaca aaaggcaaaa aattaatccg tccgatgcta gtgactatgt
    37501 cttttatgat ggtcggcaaa atgctctacg agcaaggaat ttttaattaa caatgaataa
    37561 agcaaaacgt attgagattt taacccgttt acgcaatgaa aatccaaaac cgacaactga
    37621 actcaattac agtaatccgt ttgaattatt aattgccgtg attctatccg cccaagcgac
    37681 cgataaaggc gtaaataaag ccaccgataa gctcttccct gtcgccaaca cgccacaagc
    37741 gattttagat ttaggcgtag atgggctaaa agagtacatc aaaactatcg gcttatttaa
    37801 cagcaaggca gaaaatatta tcaagacctg ccgagatctg atcgaaaaac ataacggcga
    37861 agtgcctgaa gacagagatg ccctcgaagc ccttgccggt gttggcagaa aaaccgccaa
    37921 tgtggtgatg aataccgcat tcggacaccc tacgattgca gtcgataccc atattttcag
    37981 ggtgtcgaac cgcacgaact tcgctcccgg caaaaatgta gttcaggtag aagaaaaact
    38041 gctcaaagtt gtgccggacg aatttaaagt cgatgttcac cattggttga ttttacacgg
    38101 acgctacact tgcattgccc gtaagcctcg ttgtggttct tgtattattg aagatttatg
    38161 tgagtttaaa gagaagacgg aataacatta tctggtggta tttaatgaat aactcccctt
    38221 ttagaaaagt aggggctggg ggagatttga tactatttca acatttcgta tgagcgtata
    38281 gaaattctgc caaatcttcc ctaccccctc tttgctaaag aggggaacta gatcgagcgt
    38341 aaaatataac aagcggtcat tttttgagat tttttgcaaa tggatattta tttagtcggt
    38401 ggagcagtgc gggatcaact tcttgggctg ccagtgaaag atagagattt tttagtggtt
    38461 ggcgcaactg ccgaacaact tttagcccaa ggatttcaac aagttggggc agattttccg
    38521 gtgtttttac accctgaaac caaagaagaa tatgcccttg ctcgccaaga acgcaagaac
    38581 ggcaatggtt acaacggctt tatttgcgat ttctccccaa acgtcacgct tgagcaagat
    38641 ttgatccgcc gagatttaac cattaacgcc atcgcccaag atgaaaacag cacacttttt
    38701 gatccttatg gcggtgtgca agatttagaa aatcggctac tccgccacgt ttctcctgca
    38761 ttcagcgaag atccgctacg ggtgctacgg gttgcccgct ttgccgcccg ttttcattca
    38821 tttggtttta ccattgctcc tgaaaccctg aaattaatgc gagagatggt acaaagcggt
    38881 gaattggaac atttaaccgc tgaacgtgtg tggttggaaa cacagaaagc ctttgaaacc
    38941 gataatccgc acgtttattt tgacatttta cgcttaattg gggcattaaa agtgctattc
    39001 cctgaactgg atcgtctgtt tggcgtacca caaccacctc aacaccaccc tgaaattgac
    39061 tccggcaaac acactctaat ggtgctacaa caggcaaaaa gacttgcaaa aaaagcggaa
    39121 aatccgaccg ctttactctt tgcagccctt tgccacgact taggcaaagg cttaacgcct
    39181 gctgatattt tgcctcatca ctacggacac gaagtcaaag gcattcaacc aacccgagag
    39241 ttagccaatc ggttaaaaat cccaactgag attaaagatt ttgccctttt agtgaccgaa
    39301 taccacacgc attgccataa aatggcggaa cttcgccctg aaacggtaat aaaactgttt
    39361 aacagcctag atgtgtggcg taaaccaaac cgcttttttg atttcctgtt cgcctgtgaa
    39421 gcggatgcta gagggcgatt aggttttgaa cagaggaatt acccccaacc tgaattggcg
    39481 aaaaaatatt accaagccgc aatcgaaatt gatgtgcagc aagttattca agacggtttt
    39541 gaaaaacaag caattcggga agagctgaat aaacgcagag tgtatgcggt aagaagcatc
    39601 aagctagata gcgacctaat aaaccattag gttatccgcc actttctcaa aatcaattcc
    39661 caaagtttaa gttggttaaa tgtatggatt ctttaaaagg tggcgttatt ttagtgaatt
    39721 tataatgttc ctatgctctt gattgttgta gccacaattt cagggtaaag atcagcaata
    39781 acccaatgcc gaaattggca atagtgaagc cggctaaccc aataaaagat aaaggttcaa
    39841 attgataaaa ttcaatcgca cctcttgcca ttgcagctaa accaaatgaa aatgcccaga
    39901 aacccatcga gaagccattt tcagctatcc atttgaggtt tcgtaaaata aaacagaatt
    39961 gtaagaatcc atatccccat aacatttttg ccaacaagtc taattctcca cccatagaaa
    40021 aataggcaga agcgcccaca aatgccggag caagaacaat tcctaaagat ggtctagcaa
    40081 tcggaaaaag cggactaagc cgaattcttt gtaacatagt gggttcatat actaaccagg
    40141 aaattatgcc aatgcctaaa aataaagagg caatttcact gtagccaatt aagcttaatg
    40201 aacttgccat agtgaagctc cctgcaattg gcggtaggta atgtaccggg tgtagcgttt
    40261 ccggcaaaaa ttgtgtgcct ttccataatc caccaataat aaaaaccaag aaaattaaat
    40321 gcaccatgac gcctaaaaaa atcaatagtt cgcctaaata aaaaccccat acatagagca
    40381 catcaccgct tatcatggtt gtcattgtca ctaaggaaaa taaacaacat tgcactgggt
    40441 gcataaattc tgctttaatc tgctcaaaac aaaaaaacac acgatacaca taacagccta
    40501 ataaggctac ccaaagtatg actgacgttc cagcaatgat attaccaatt gttgtagcat
    40561 aaggagtgat aggcgttgca tttaaccagg caaggcctaa cgcccccagc cctaatggca
    40621 ttgcaaaaaa gcctgtagtt attggaaaag gtttagattc actcataaat ttatcctcat
    40681 attgaaataa tgcataactg tattcggctt tataacagtc atatgtaaaa aattttattt
    40741 ttctaaccgc ttgtaataag aaaaacctaa agcacttgct ttaggttcct actactattc
    40801 atactcttct agccagatag ttaaaatcgc ttcaagaata tgttcatttg atgcttccgg
    40861 atcatcatcg aaatcttcca tttcacaaat ccatttatgc atatctgtaa aacgaaccgt
    40921 ggtcgggtct aaatccgggt tcatatcata cagattttca gcgatcattc gggtatctgt
    40981 ccatttcatt agtgcgctgc ctcatttgcg tgatttaaat tatattttgg aatttcaaca
    41041 accaaatctt cttcaccaac aatacattgg caacttaaac ggctgtctat ttccaatccc
    41101 caagctttat ccagcatatc ttcttcttga tctgaagtat catttaacga atcaaaaccc
    41161 tcacgaatta ccacgtggca agtggtacaa gcacaagaac agtcgcaagc gtgatgaatt
    41221 tcaacgcctg cttcgtgtgc tacttctaat aaattatctc cggctttagc ttcaacaacc
    41281 ataccttccg ggcaaaattc ttcgtgtgga agaaaaacaa tttttggcat tttaaagttt
    41341 ccttattact aatcccattc aatattatcc agatgttcgc cgatgaagtt taaaatctct
    41401 tcctcatttt caaccagata aacaataatc ttctttaatt cccttgcttt ctctttactt
    41461 ttctcggaaa gcggataggt aacataataa catcctacgt ccggatcttc ttctaataac
    41521 tctaataggc ttggacgata aatactaaga taagcccgta aaaatgcagc ccagttataa
    41581 ccgttcatat aggcaacatc atattcagta ttaatccgct cgcccaactc aaaaatgcgg
    41641 ttatcctcta aatcgaattc aaccgcaacg gttctgaatt gttctgaaat ctcggttttt
    41701 acatagttag acatactgcc tccttatgct aaatcgtcca tttttttacc ggctaacgct
    41761 ttttgaattg ataaattcat acgccgtgct gcaaattctt gcgtagctaa atccacctct
    41821 ttgatacctt gctgaattgc aaagcgagca gtaccttctt ttaattcgat taaacgggct
    41881 aattgtgctt caatcgcttg gaactcctcc acactcaaca ctgcagagcc atcttctttc
    41941 aatgccgtta ccacgctgtc aatcactcgg tcggcttcta ctcgctgttc aactaactgg
    42001 cgggcttcca tatcttcttt ggcatttgcc attgaggatt taatcatctg cgtaacttct
    42061 tcatcggtta agccataaga cggtttgatt tgaattgaag cctgcacttt ggtcgatttt
    42121 tccattgcag tcacgtttaa taaaccgtct gcatcaactt ggtaagttac ccgaacctgt
    42181 gcaacccctg ctgccattgc cggaatgcca cgcaaagtga ttttaccgag agagcgacaa
    42241 tcttcgacta attcacgctc accttgtaaa acgtggattg tcatcgccgt ttgaccgtct
    42301 ttaccggtag taaactcttg agctcgagct actgggatag tagtgttgcg tggaataatt
    42361 ttctccacca aaccacccat cgtttcaata ccaagcgaaa gtggcacaac atcaagcaac
    42421 aacatatcgg aatccggttt gtttccaact aaaatatccg cctgcactgc cgcaccaatg
    42481 gcaacaactt tatccgggtc gatagaggtt aatggcgttt taccgaaaaa ctcgccgact
    42541 tgttcacgca caaacggtac acgggtcgaa ccgcctacca ttaccacttc acgaacctct
    42601 tctgcttcaa ctccggcatc tttcaaggct cggcgacaag tcatcagcga gcgttttaca
    42661 agcggttgaa ttagctcatt aaattgcgaa cggcttacta cgcctgtcca atttgcaaat
    42721 ttcacttcaa attcaaccgc ttgcgaaagt gcgactttgg tttgagttgc caaagttaat
    42781 aattcacgct gctcgcttgc cgtttgaggt ttgtaatttg cctgttcagc aatccattcc
    42841 gctaataggt ggtcgaaatc atcgccaccg agtgcggtat cacctgcggt tgctaatact
    42901 tcaaacacac ctttgcgtaa acgcaaaata gataaatcga aagtaccgcc acctaaatcg
    42961 taaacggcaa tcacaccttc ttgtccgctt tctaaaccat aagcaatcgc tgctgccgtt
    43021 ggttcattga gcaaacgtaa tacatttaaa cccgcaagac gtgcggcatc tttggtactt
    43081 tggcgttgtg cgtcatcaaa ataagccggt acggtaatta ccacgcctga aagctcaccg
    43141 gctaaacgct tttcggcaaa ttgtgccaag tggcttaaaa tatccgccga aacttcaatc
    43201 gggcttttat taccttgcgc tgtttggatt aaaggtaaac cgttttcgct cgcgacaaat
    43261 tgataaggta aattttgata acgttgctga acatctgcca gagaacgccc aatgagacgt
    43321 ttagctgaaa tgacggtatt tttcgggtca agtgcagctt tggcaaaggc ttcaatccca
    43381 actgtttttt ctgtttccgc ataatgcact actgacggca ctaatgctct ttcttgttca
    43441 tcaagcaata cctgagtctg cccgctacgc acagttgcca ctaatgaatt ggttgtacct
    43501 agatcaattc ctaccgctaa tttatgttga tgtggtgcag cggtttgacc gggttcagaa
    43561 atttgtaata atgccattta tttatctctt tatctttcta acttagttct ctattgtatt
    43621 aaatggagtg aaatatattg tttaagagaa gctggagatt cccctctccc tgatttttct
    43681 tctgaacgaa gaaaaatcta tccctctccc acaaggggag agggttattc tttcaaaaat
    43741 tcaaaacaac taaaaaatta gcattctcct tttgtaggag aaaatgttgt tctttcaaaa
    43801 ttctaaaata accgcaaaat taactctcgc cccttgtggg agagagacag ataaatcatt
    43861 cgttcagaat gatttatcag agagaggggg aattaccctc tcgtaatttc ataaaaaatt
    43921 gtatctaaaa cagcctctag atcgctatga atttgattat tccaaaatct taaaaccctg
    43981 aacccctgac cgtttaaaaa atgagttcgt agattatcat agttttgttg atctaaatgt
    44041 tgtgaaccat ctaattcaat aactaatttc gctgaaaagc aaacaaaatc gacaatatag
    44101 ttacctataa cttgttgccg tttaaatttt atcgctaaaa atcgttttgc tcttaatgct
    44161 tgccaaagaa ccttctctgc ttctgtcata ttag
//
LOCUS       DANLUT010000005        43532 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLUT010000005 DANLUT010000000
VERSION     DANLUT010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 43532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43532
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(58..4341)
                     /gene="rpoC"
                     /locus_tag="PXB38_000242"
     CDS             complement(58..4341)
                     /gene="rpoC"
                     /locus_tag="PXB38_000242"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL5352610.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
     gene            complement(4604..8629)
                     /gene="rpoB"
                     /locus_tag="PXB38_000243"
     CDS             complement(4604..8629)
                     /gene="rpoB"
                     /locus_tag="PXB38_000243"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL5352611.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAARGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            complement(8979..9878)
                     /locus_tag="PXB38_000244"
     CDS             complement(8979..9878)
                     /locus_tag="PXB38_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352612.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDVDPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            complement(9994..10269)
                     /gene="tusB"
                     /locus_tag="PXB38_000245"
     CDS             complement(9994..10269)
                     /gene="tusB"
                     /locus_tag="PXB38_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL5352613.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            complement(10279..10650)
                     /gene="tusC"
                     /locus_tag="PXB38_000246"
     CDS             complement(10279..10650)
                     /gene="tusC"
                     /locus_tag="PXB38_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL5352614.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            complement(10652..11029)
                     /gene="tusD"
                     /locus_tag="PXB38_000247"
     CDS             complement(10652..11029)
                     /gene="tusD"
                     /locus_tag="PXB38_000247"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL5352615.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            complement(11029..11685)
                     /locus_tag="PXB38_000248"
     CDS             complement(11029..11685)
                     /locus_tag="PXB38_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5352616.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            complement(11782..12507)
                     /gene="fkpA"
                     /locus_tag="PXB38_000249"
     CDS             complement(11782..12507)
                     /gene="fkpA"
                     /locus_tag="PXB38_000249"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5352617.1"
                     /translation="MLKTKLSLFTLIVGTLFSTNVMAEEKADPKFVDDSSYAVGVLMG
                     KNINGVIESQKDIFTYNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKI
                     NEEKTKATVAAGDKFRADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGT
                     LTDGTVFDSSYDRGEPIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGK
                     IPANSTLKFEIELLDFKAADAKK"
     gene            12595..12816
                     /locus_tag="PXB38_000250"
     CDS             12595..12816
                     /locus_tag="PXB38_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL5352618.1"
                     /translation="MDNNYTLSAKITELETKVAFQELIIEELNQALIEQQFAIDKLQT
                     QIRHIAEKLKGAQLSQVASQAEETPPPHY"
     gene            12874..13566
                     /gene="mtnN"
                     /locus_tag="PXB38_000251"
     CDS             12874..13566
                     /gene="mtnN"
                     /locus_tag="PXB38_000251"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL5352619.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            13721..15058
                     /gene="rimO"
                     /locus_tag="PXB38_000252"
     CDS             13721..15058
                     /gene="rimO"
                     /locus_tag="PXB38_000252"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL5352620.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEETKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            15068..17077
                     /locus_tag="PXB38_000253"
     CDS             15068..17077
                     /locus_tag="PXB38_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5352621.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNPKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNAAKTETKS"
     gene            complement(17156..18413)
                     /locus_tag="PXB38_000254"
                     /pseudo
     CDS             complement(17156..18413)
                     /locus_tag="PXB38_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(18426..19214)
                     /locus_tag="PXB38_000255"
     CDS             complement(18426..19214)
                     /locus_tag="PXB38_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL5352622.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            complement(19217..20758)
                     /locus_tag="PXB38_000256"
     CDS             complement(19217..20758)
                     /locus_tag="PXB38_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL5352623.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENTTPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            20984..21814
                     /locus_tag="PXB38_000257"
     CDS             20984..21814
                     /locus_tag="PXB38_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5352624.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            complement(21921..22289)
                     /gene="rplL"
                     /locus_tag="PXB38_000258"
     CDS             complement(21921..22289)
                     /gene="rplL"
                     /locus_tag="PXB38_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL5352625.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(22348..22839)
                     /gene="rplJ"
                     /locus_tag="PXB38_000259"
     CDS             complement(22348..22839)
                     /gene="rplJ"
                     /locus_tag="PXB38_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL5352626.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            complement(23120..23335)
                     /locus_tag="PXB38_000260"
     CDS             complement(23120..23335)
                     /locus_tag="PXB38_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5352627.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            complement(23384..24526)
                     /locus_tag="PXB38_000261"
     CDS             complement(23384..24526)
                     /locus_tag="PXB38_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL5352628.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQYRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            complement(24549..25454)
                     /locus_tag="PXB38_000262"
     CDS             complement(24549..25454)
                     /locus_tag="PXB38_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
                     /protein_id="HDL5352629.1"
                     /translation="MKKILLVYYSQTGQLTRLAENFVQPLEQAGVFVEKLAIKPQQEY
                     PFPWRFMRFFNTFPETVHLTPPPIEPLPFQHEIYDLVIIAYSVWFLSPSQPITAFLQS
                     EQAKKVLKDTPVITLIGCRNMWLMAQEKVKKLLAESEAKLIGNVVKVDQSNDWASFIT
                     TPLWMLTGKKKIGKLPSAGIAESEMEDVKRFGAKLLHIFSQNQPLDSTLFRQMQAVKI
                     DEKLMMSEKVGARSFHLWGKLLIKCGQISPHLRQAVLYFYILFLVTLILTVVPISTVI
                     KRLLRPLLKEKLEKQKRYFAEPSGE"
     gene            complement(25468..26613)
                     /locus_tag="PXB38_000263"
     CDS             complement(25468..26613)
                     /locus_tag="PXB38_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5352630.1"
                     /translation="MKRVVITGIGAVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDGRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASEVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGMNTSLIFKRWK"
     gene            complement(26676..27404)
                     /gene="fabG"
                     /locus_tag="PXB38_000264"
     CDS             complement(26676..27404)
                     /gene="fabG"
                     /locus_tag="PXB38_000264"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5352631.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKAAYITRQVIAVNGGLC"
     gene            complement(27418..28851)
                     /locus_tag="PXB38_000265"
     CDS             complement(27418..28851)
                     /locus_tag="PXB38_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5352632.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRAITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITVKIASEILDRSKELSRRIL
                     KSLEQKNILTWHGLSPKDPTQYYTLKK"
     gene            complement(28921..29361)
                     /locus_tag="PXB38_000266"
     CDS             complement(28921..29361)
                     /locus_tag="PXB38_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog family protein"
                     /protein_id="HDL5352633.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQGVAAWAGCIATQAGEPVRLGYLLGTRKLHLHRQEIPIG
                     SQLQIQIKMSIQDATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            complement(29354..30577)
                     /locus_tag="PXB38_000267"
     CDS             complement(29354..30577)
                     /locus_tag="PXB38_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5352634.1"
                     /translation="MMTLYLSEPAITSPIGYGIVEHLNVLINAKVSPLDTTSQPYLRH
                     NISNSSPKFLGQVSARLRDFPVELSIEHRSRNNQLLWHALAEIEPKITACIEQFGRER
                     IAVIIGTSTTGADENIPVFKAGVQGDYATEQFNQQQILFSAPSDFVAEVYGLTGLSYG
                     ISTACTSGARALISAARLLKAGLCDAVICGGVDTLSPLTISGFSSLEVLSNQQTNPFS
                     ANRNGINIGEGAAVFVMSREPLDEHRIQLLGYGSSSDAYHMSSPHPEGEGAISAFQNA
                     LHNADLDAADIGWINLHGTGTLHNDQMESLAVAKIFGNQTACTTTKPYTGHTLGAAGA
                     VEAAILWGMLCRQHNPTGKLPAQLWDKQADENLPNIAITYEQSRWAAGRRIGASSSFA
                     FGGNNSVLILGESDA"
     gene            complement(30664..31083)
                     /locus_tag="PXB38_000268"
     CDS             complement(30664..31083)
                     /locus_tag="PXB38_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352635.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            complement(31145..31834)
                     /gene="rplA"
                     /locus_tag="PXB38_000269"
     CDS             complement(31145..31834)
                     /gene="rplA"
                     /locus_tag="PXB38_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL5352636.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            complement(31839..32267)
                     /gene="rplK"
                     /locus_tag="PXB38_000270"
     CDS             complement(31839..32267)
                     /gene="rplK"
                     /locus_tag="PXB38_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL5352637.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            complement(32500..33063)
                     /gene="nusG"
                     /locus_tag="PXB38_000271"
     CDS             complement(32500..33063)
                     /gene="nusG"
                     /locus_tag="PXB38_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL5352638.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            complement(33065..33478)
                     /gene="secE"
                     /locus_tag="PXB38_000272"
     CDS             complement(33065..33478)
                     /gene="secE"
                     /locus_tag="PXB38_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL5352639.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            complement(33591..34613)
                     /locus_tag="PXB38_000273"
     CDS             complement(33591..34613)
                     /locus_tag="PXB38_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5352640.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPTKLV
                     IRDSTA"
     gene            34844..35113
                     /locus_tag="PXB38_000274"
     CDS             34844..35113
                     /locus_tag="PXB38_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5352641.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            35126..36481
                     /locus_tag="PXB38_000275"
     CDS             35126..36481
                     /locus_tag="PXB38_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HDL5352642.1"
                     /translation="MESLLFFILDILKVPSVLVGLIALVGLVAQKKSVSDIVKGTIKT
                     ILGFLVLSGGATVLLSSLTPLGGMFEHAFNVQGIIPNNEAIVSMAIEKYGTATALIMA
                     FGMVANILIARFTRLKFIFLTGHHTFYMACMIGVILTVAGFEGIQLVFVGALTLGLIM
                     AFFPTIAHFYMKKVTGSNDVALGHFGTLGYVLAGAIGQLVGKGSKSTEEMDLPKNLGF
                     LRDSSISISLTMMAIYYILAIASGSEYVSTLSGGQHYLVYATIQAITFAAGVYVILQG
                     VRLILAEIVPAFTGFSEKLVPDAKPALDCPIVFPYAPNAVLVGFLASFLGGILSLAIL
                     GQLNWVLILPGVVPHFFCGATAGVFGNATGGRRGAIIGAFIHGILITFLPVFLLPVLG
                     SLGFANTTFSDSDFGGIGIVLGYMAQYFDKNIITLIIIGLFTLLVAYNYLAKKPAEPK
                     A"
     gene            complement(36576..37721)
                     /gene="dprA"
                     /locus_tag="PXB38_000276"
     CDS             complement(36576..37721)
                     /gene="dprA"
                     /locus_tag="PXB38_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL5352643.1"
                     /translation="MAYQYDLLRLLQVQIGPQRIGRLLAELDFAEFCAYDKTQLRQIG
                     WNEKQIQRWFNPDKNWIEQALTWAEQPNQQILSLFDKAYPFLLRQISTAPPILFVKGN
                     VESLSLPQIAIVGSRDYSPYGEYWAGQFAADLVKHNMAVTSGLAIGIDGFAHKKVVEY
                     QGITIAVLGSGLNRIYPARHQKLAEQIVESGGALVSEFSPNQPPIAENFPRRNRIISG
                     LSLGTLVIEATINSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEG
                     VEDILEAVASQYQPQQIPLFDEPKPIVSTSLQAVKSSEKFAKNPPNLTACQQQIYQHI
                     SLEPIAIDDLARATELTIETLLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            37810..38322
                     /gene="def"
                     /locus_tag="PXB38_000277"
     CDS             37810..38322
                     /gene="def"
                     /locus_tag="PXB38_000277"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL5352644.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            38416..39342
                     /gene="rfaD"
                     /locus_tag="PXB38_000278"
     CDS             38416..39342
                     /gene="rfaD"
                     /locus_tag="PXB38_000278"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL5352645.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(39418..39948)
                     /gene="fabA"
                     /locus_tag="PXB38_000279"
     CDS             complement(39418..39948)
                     /gene="fabA"
                     /locus_tag="PXB38_000279"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL5352646.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(40061..41698)
                     /locus_tag="PXB38_000280"
     CDS             complement(40061..41698)
                     /locus_tag="PXB38_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5352647.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSEIFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYSEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            41791..42237
                     /gene="matP"
                     /locus_tag="PXB38_000281"
     CDS             41791..42237
                     /gene="matP"
                     /locus_tag="PXB38_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL5352648.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            complement(42303..43421)
                     /gene="ompA"
                     /locus_tag="PXB38_000282"
     CDS             complement(42303..43421)
                     /gene="ompA"
                     /locus_tag="PXB38_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL5352649.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DHEGDGGGFDLKYGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTTFAD
                     DKERTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQRVDKDSRIKAH
                     NLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNVDKAVRKTVSIPTGTNFQYSPDIH
                     SVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDAAHAEIS
                     NLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAVGYGEAN
                     PVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT        12345 a         9673 c         8589 g        12925 t
ORIGIN      
        1 aacctcctag aaattatatt ctaggagatt ttttaattta tcatacccta cgagctatta
       61 ctcttcctca cccgcattta acaacgctgc taaactttgg gttgcatcgt ctgcaacaaa
      121 ttcaaattca gcttcgatgt ctgcatcggt aacgaatgaa ttggctttag ctgccggtgc
      181 ttcaaattca gggacaactg caattcctgc ttccagttgg gcacgttttt tagctcgtgc
      241 ttggtggtaa gcaaaaccgg tacctgccgg gattaagcga ccaacgatta cgttctcttt
      301 taagccacgc aattcatctt gtttacctgc cactgcggct tcggtaagca ctcgagtggt
      361 ttcttggaac gaggctgcag aaataaagct ttctgttgca agagatgctt tggtaatacc
      421 aagcaattca cgttcaaatt ctaccaacgg tttgccttct tcagcacgtt tgcggttggc
      481 aattttcaca cgagccactt ccacttgttc gccctctaag aattcagagt cgtaagcgtt
      541 ggtgatcaca gctttacgca acatttggcg aacaatcact tcgatgtgct tgtcgttaat
      601 ttttacccct tgtaagcggt aaacttcttg cacttcgttt acgatgtagt cggtaacggc
      661 gtgaacgcca cgtaagcgta agatgtcgtg cggagtttct gcaccgtctg atatcacatc
      721 accacgttgt accatctcgc cttcaaatac gttgagctga cgccattttg gaatcatctc
      781 ttcaaacgct tcgccttccg ccggagtaat taccaagcgg cgtttacctt tggtttcttt
      841 accgaacgac acaatacctg aaatttccgc caagattgcc ggctctttcg gtttacgggc
      901 ttcgaataag tctgctacgc gtggaagacc accggtaata tctttcgtcc ccacagattc
      961 ttgtggaata cgggctaagg cttcaccgac ttcaatttct gcaccatcgt ctaaggttac
     1021 gattgcttta cccggtaaga agtattgtgc tgcaacgtct gtacccggaa ttaagatgtc
     1081 tttgccgttg ctatcaacta agcgtaatgc cggacgtaaa tctttacctg cggttgcacg
     1141 ttcacccaca tcttgcacca cgatagatga taaaccggtt aattcatcgg tttggcgagt
     1201 aacggttaag ccatctacga tgtcgctaaa ttggatacga cctgatacct ctgagattac
     1261 cggcattgtg tgcggatccc agttcgcaac cacttcaccc acagccactt ctgcaccgtc
     1321 gtgtttagaa agcaccgcac cataaggcac tttatagttt tctttggtac gaccgaaggt
     1381 gtcgatgaca gttaattcag tattacgaga agttaatacg attttgcctt ctttgttggt
     1441 tacaaattta gcgttggtta atttaatcgt acctgcgttt ttcacttgga tgctagattc
     1501 ttttgctgcc gcagaagccg caccaccgat atggaacgta cgcatcgtta actgtgtacc
     1561 cggctcaccg atagattgtg ccgcaataac accgaccgct tcaccttggt tgattaagtg
     1621 accacgagcc aagtcacgtc cgtaacattt agcacacaca ccgaagtctg tatcacaagt
     1681 tactaccgaa cgtactttga tcacatccac agattcacga tccaccacat cacaccattt
     1741 ttcatctaat aaggtgttgc gtggaattaa tacttcatct gtacccggtt ttaacacatc
     1801 ttctgccacc acacgaccta atacacgatc acgcagggct tctttcacat caccaccttc
     1861 gataagtggt gtcatcacga taccttcgtg cgtaccacag tcatcttcaa tgataactaa
     1921 atcttgtgcc acatcaacta aacgacgggt taagtaaccg gagttcgctg tttttaatgc
     1981 cgtatcggca agacctttac gtgcaccgtg ggttgaaata aagtactgta atacgttcaa
     2041 accttcacgg aagtttgcag taattggggt ttcgataatc gaaccgtccg gacgagccat
     2101 caagccacgc atacccgcta actgacgaat ctgtgcagca gaaccacgag caccggagtc
     2161 cgccatcata aagatactgt taaatgaggc ttgtttttcc ggattacctt cacggttgat
     2221 tacttcttcc gttgaaaggt tttccatcat tgctttcgca acacgttcgt ttgcagcagc
     2281 ccaaatatcg atcactttgt tataacgctc accggctgtt actaaaccgc cgttgaattg
     2341 ctcttggatc tcagcgactt ccgcttcagc cgcttcaatg attgcgtatt tttgctccgg
     2401 aattaccata tcgtcgatac ctactgaggc accagaacga gcagcataag caaagccggt
     2461 gtacataatt tggtcagcta aaaccacaga ttcttttaaa cctaaacggc gatagctctc
     2521 gttaattaat ttcgagatcg cttttttgcc taaggtttgg ttgaacaagc taaacggcat
     2581 accttttggt gcaatcatcc ataagattga acgaccaatg gtggtatcta ctaacgaagt
     2641 ttttgcttct aattcgcctg cttcgttttt ctcatattca gtaacacgca ctttaacacg
     2701 agaatgtaat tcagcctgac cggtacggta tgctttttcc gcttcacgag ggtcaaggaa
     2761 gtacattccc tcacctttac cgtttacttt ctcacgggtc atatagtaaa gaccgagtac
     2821 aacgtcctga gacggtacga taatcggatc accacttgcc ggtgaaagta cgttgttggt
     2881 tgacatcatt aacgcacgag cttctaactg tgcttcaagg gttaatggaa cgtgaaccgc
     2941 catttggtca ccgtcgaagt ccgcattgaa cgccgcacac acgagtgggt gtaactggat
     3001 cgctttacct tcaatcaata acggctcaaa cgcttggata cctaaacggt gaagtgttgg
     3061 tgcacggtta agtagaatcg ggtgttcacg aatcacttcg gcaagaatat cccatacgat
     3121 aggatcttca cgctctacca ttttcttcgc ggctttaata gttgaagcaa tgccacggtt
     3181 ttctaatttt gagtagataa acggacggaa taattccaac gccattttct tcggtaaacc
     3241 acattggtgt aagcgtaagt atgggcctac ggtaattacc gaacgacctg agtaatctac
     3301 acgtttacct aataagtttt gacggaaacg accttgttta cctttgatca tatctgccaa
     3361 agattttaac ggacgtttgt tcgaaccggt aatcgcacga ccacggcgac cgttgtctaa
     3421 taacgcatca accgactctt gtaacatacg tttttcgtta cgcacgatga tgtccggtgc
     3481 aactaaatct aacaagcgtt ttaaacggtt gttacggtta attacacggc ggtataaatc
     3541 gtttaagtca gaagtcgcaa aacgtccacc atcaagcggt actaacgggc gtaaatccgg
     3601 tggaagtacc ggtaataccg tcattaccat ccattccggt ttattaccgg actgtaagaa
     3661 tgcttctaag gtttttaaac gcttagtgat ttttttacgc ttggtttctg aattggtttc
     3721 ttgtaactct tcacgcaagg tttcgcattg gtgttctaaa tctaaatcac gaagtaatgc
     3781 ttggataccc tctgcaccca ttttcgcttc aaattcatcg ccccaacgct cttcagcgtc
     3841 cataaattgt tcttcggtta ataactgatt tttctctaaa tcggtcattc ccggctcagt
     3901 aactacataa gattcaaaat aaagcacacg ttcaatatca cgcaacggca tatctaagat
     3961 taaaccgata cgggacggca gtgattttaa gaaccagatg tgtgcgactg ggcaagctaa
     4021 ttcaatgtgt cccatacgct cacgacgtac tttggtttgg gttacttcaa caccacattt
     4081 ttcacaaatt acaccacggt gttttaaacg tttatatttc ccacacaagc actcgtaatc
     4141 tttcaccggt ccgaaaatac gtgcacagaa taaaccgtca cgttccggtt tgaaggtacg
     4201 atagttaatg gtttccggtt ttttcacttc accaaaagac caagaacgga tcttgtccgg
     4261 tgatgctaaa ccaattttaa tcacatcaaa atcttcgttc gattttgttt gtgcttttaa
     4321 aaacttcact aagtctttca cttttttgcc cctagtttga ggttgttttg tttggtggaa
     4381 agaatatcca ctctacgaat ttggttgcga ttttaaaccc tctccccttg tgggagaggg
     4441 atagattttg cctcgttcag aagcaaaatc agggagaggg taagcggtcg atttttgcaa
     4501 aaatttagca aatttacacc gcttgcatca ccctctctct gccaaaggat tctgaacaaa
     4561 tcctttgcct gtctctcccc catcaagggg gagagtgaaa ccattacgct tcgtccagct
     4621 ccatatcaat tgctaatgca cggatctctt tggtaattac gttaaaggat tcagggatac
     4681 ccggctccat ataatgtgta ccatctacaa tgtttttata catcttcgta cgaccgttca
     4741 catcgtccga tttcaccgta agcatttctt gaagagtata agccgcaccg tatgcttcta
     4801 atgcccaaac ctccatctca ccgaaacgct gaccaccgaa ttgagcttta ccacccaatg
     4861 gttgttgagt aacaaggcta taagaaccgg ttgaacgagc gtgcatttta tcatcaacca
     4921 agtggttcaa tttgagcata tacatataac caacggttac cggacgctca aatttctcac
     4981 cggtacgacc atcataaagt gtgatctgac ctgaagtcgg taagccgcct aactctaata
     5041 agcctttgat ttcgctttcg tgtgcaccat cgaataccgg agtagcaagc ggtaagcctt
     5101 tgcgtaagtt ttgcgctaaa cgcatcactt cttcatcaga gaaagtgctt aaatcaacga
     5161 cttgtgagcc gtgacctaaa tcgtaggctt tttgcatata ttcacgtaat ttagccactt
     5221 cttgttgctg tttgatcatc ttatcaatct gatcaccgat accacgagcc gctaagccta
     5281 agtgggtttc taagatctga ccgatgttca tacgagacgg tacgcccagc gggttcaata
     5341 cgatttcaac cggctgaccg ttttcatcgt atggcatatc ttccacaggg ttgattttcg
     5401 agataacccc tttgttaccg tgacgacccg ccatcttatc acccggctgg atttggcgtt
     5461 tcaccgcaag gtaaactttc actactttta acacacccgg tgctaaatcg tcgccttgga
     5521 taattttgtt gcgtttgatc tcaagtttac gttcaaattc tttgcgtaac tcttcgtgct
     5581 gttccgctaa ctgttctaac tgattttgct tcgcttcgtc ttcaagggtt tgttctaacc
     5641 atttttcacg agcaacgcca tctaatgcag attcttttac gccaccttca attaataggt
     5701 tgcgaacacg agtaaataaa ccggcttcta agatttccaa ctcttccgct aagtctttct
     5761 tcgcttcaca cagttgcatc tcttcgattt ctttcgcacg tttatctttc tctacgccat
     5821 cacgggtaaa tacttgaaca tcgataaccg tacctgaagt accgtttgga acacgcaatg
     5881 atgaatcttt cacatcagag gctttttcac cgaagatcgc acgcaatagt ttttcttccg
     5941 gtgttaattg ggtttcacct ttaggagtta ctttacctac taagatgtcg ccacctttca
     6001 cttctgcacc gatgtaaacg atacctgatt catctaattt gcttaatgca gattcaccca
     6061 cgtttggaat atcagcggtg atctcttctg cacctaattt ggtatcacgc gccacacaag
     6121 ataattcttg aatgtggata gtggtaaagc gatcttcttg taccacacgc tcagaaacta
     6181 acattgagtc ttcgaagtta taaccgttcc aaggcataaa tgccacacgg atattttgac
     6241 ctaatgccaa ttcacctaag tctgttgaag gaccgtccgc taagatttca ccacgagcaa
     6301 ccggctcacc caagttcaca caaggtactt ggttgataca ggtgttttgg tttgaacggg
     6361 tgtatttgat taagttataa atatcgatac ccgcttcgcc cggaatggtt tcatcttcat
     6421 ttactttcac tacaatgcgt gacgcatcaa catactgcac cgtaccacca cgttttgcga
     6481 caatcgctac acctgagtca agagcaattg gtttttccat accggtaccg actaatggtt
     6541 tgtccgcacg caaggttgga actgcctgac gttgcatgtt cgcacccatt aacgcacggt
     6601 tcgcatcgtc gtgctcaagg aacggaatta acgccgcagc cacagaaacc acttgttggg
     6661 ttgagatgtc catatattga acttcttccg gtttgaataa gcccgattcg ccttgctgac
     6721 ggcaagttac ataagtatcg gtaaaacgga agttctcatc taagtttgag ttcgcctgtg
     6781 caatgatatt gttgctttct tcaatcgcag ataaatactc gatctcttcg gttacttgac
     6841 cattcaccac tttacggaat ggagtctcta agaaaccgta gttattagta cgagcataca
     6901 ccgatagtga gttgatcaaa ccgatattcg ggccttcagg agtttcgatt ggacataaac
     6961 gaccatagtg agtcgggtgt acgtcacgca cttcaaagcc ggcacgctca cgggttaaac
     7021 cacccgggcc taatgccgag atacggcgtt tatgtgttac ctctgaaagc gggttgtttt
     7081 ggtccataaa ttgcgaaagt tgtgatgaac caaagaactc tttcactgct gctgaaatcg
     7141 gtttagcgtt gattaaatct tgtggtgtta caccatctaa atcgcctaaa gataaacgct
     7201 cacgcaccgc acgttctaca cgcaccaaac caatgcggaa ttggttttct gccatttcac
     7261 caacgctgcg gatacgacgg ttacctaagt ggtcgatatc atccacttca ccacgaccgt
     7321 tacggatttc gattaatttt ttcatcacac cgatgatgtc atcgttgctt aaaataccgc
     7381 tgcctacgcc ttccggaatt tctaacgagc gattgaattt catacgacct actgccgata
     7441 aatcataacg ctctgccgag aagaacatat tatcgaataa tgcttctgcc gcttctttcg
     7501 ttggtggttc gcccggacgc atcatacgat agatttcaac caacgcactt aaacggtcgt
     7561 aagttggatc aacacgtaag gtttcagaaa tatatggacc gtggtctaaa tcgttggtaa
     7621 ataatacttc gatctggttg taaccggctt gtgataaatt cgccaacatc tccatcgaga
     7681 tttccatatt cgccgggcaa atcacttcac ctgaagataa atcaacgtaa tcttgagccg
     7741 ctactttgcc gacaatatat tccaccggca cttcaatttg ggtcacattg tctttttcta
     7801 acgcacggat atgacgagcg gtaatacggc gacccatttc aacatatact ttgccgtttg
     7861 ctgcaatatc aaatgatgca gtctcgcctc ttaaacgctc aggcactaac gtcatcaata
     7921 atttattatc ggcaatttca aatttaattt tctcgaagaa taaatttaag atttcttcgg
     7981 tggtgtagcc taatgcacgt agaataatgg ttgccggcaa tttacgacgg cggtcgatac
     8041 gggcaaataa gttatctttc ggatcaaact cgaaatctaa ccaagaacca cggtaaggga
     8101 taatgcgtgc gttataaagc actttacccg aagagtgggt tttacctttg tcagaatcga
     8161 agaacacacc tgggctacgg tgtaattgag aaacgataac acgctcggtg ccgttaatca
     8221 cgaaagtacc gttatcggtc attaatggga tttcgcccat atacacgttt tgctctttaa
     8281 tgtcttttac cgtaccggct gcggcttcac gatcgtaaga gactaaacgc aatttcacgc
     8341 gtaatggtgc agcgtaggtt gtaccacgaa tttggcactc acgcacgtca aacaccggct
     8401 cgcctaattc gtaagaaacg tattgtaatt ctgttgcacc attgttgctc acaatcggga
     8461 aaacagaacg gaatgccgct tctaaacctt gctgcccttc aggatctttt tcgataaatt
     8521 tttcaaaaga atcaagctga attgttaata gataaggtac gttcagaact tgtgggcgtt
     8581 tgccaaagct cttacggata cgctttttct cggaatatga atatgccatt ttttaagata
     8641 gcctctgaaa tatattttgg ttgagattac acaatccgac acgaaagact cggttggaag
     8701 tggcattata aaaactgtac gagatgtcat tttccaatcg ccaatcaagc agtcagaaat
     8761 cgctactgca agcggtcaaa ttgggcagga aatttgcaaa ttttgctgat taaaatgaca
     8821 aaatcagccc ttgcgttcaa gcacaaaagg ctgaccggtc aagccgtcag ccaatttttg
     8881 ctaaaaatgg ttaggaatta tagcggattt tgtaaatttt ggcaagaaat tgaccgcttg
     8941 caaaaacaag ccccaagatt ctacttgagg cttaatagct agaagatagc ctctaaacgt
     9001 acaaatgtct gaataaagtg cttacgatct ttatctttgt cgttataaaa actgatttca
     9061 ggctggataa agagccagtt gcgccagatt ggttgacgat aggagacaaa tggaccccaa
     9121 tagttaaatt ttgataactc tttatctaaa cgccccccca tactgatacc atagctgatg
     9181 tgcgtgagtg gtttgaagtt atgttgacga tataaactat tcccccaact tctttcttca
     9241 tctacatcat gacgatattc aaaattggtg tggttcataa taaaggtggt atccgtttcg
     9301 gtatatttat tttcaaagtt agtacgtaaa tagtgcttgc tctctgaacc gtaacgataa
     9361 atttgctcta ggcgggtact gaactggtcg gtgattttcc aatctttact gatgcgtaaa
     9421 cgcccgaaaa tatcgcttcc cgaacgaata ccagcatcta aatcggtctc aatccctaaa
     9481 gccttaatgc catcagacca acgtaaaccg atagaagagt tcgaatctct cgcttcacga
     9541 gagttatagc gtttatttgg attgacgttt ttatacaatt ttccagcatg atttttatcg
     9601 gtaagctcat tatccagttc gtcatcacca aatacgacat ttagatgctt tttcaagata
     9661 gggagtttga ttttaccacg aacacggggc ttataagtaa atttatcgtg tttatcccaa
     9721 cggctatcta acattacccg taaagaagcc gttcccggtt tatctgggtc tacatcacct
     9781 agccaactgt taatattgtt tgcccaacga tctaaggtag tgcttactgt ttcatgtttc
     9841 ttgtctaccc aagtgttatt ttcttctgcc atcaccataa caggtgtaag tgctagtagc
     9901 ggaataagac attttgtttt cataatattc tcctttttag gaatcacatc ataatctaaa
     9961 ttatttggta ttacaaaaaa tatcctctct aggttacagt gcaacctggg gaaaataaac
    10021 cgctgttaat ttgactaatt cggataatga aatgcactga aatgcagtga gcttctcttg
    10081 caatcctcga gcttgcacat cttgtgccaa taaatagcaa cggggcaatt ttgcaaaaaa
    10141 ttgcggactt ttgaccgctt gtagcacgcc atcttgccac agaacaaccg catcgttctc
    10201 actaagatgt gagaaaaaga agtttaaggt ttcttcatca taattcgctt tggaaagggt
    10261 ataaagcata aatattcctt aaaacgtcat tactttttca gcttgattga gcaatgcgat
    10321 catctcagcg tgagttttaa attgaagcat tcgcagtaac caatctgcat tatccagccc
    10381 tcgtaaactt acactttctt ggcaaataaa acattcagtt aagtcataca actccaataa
    10441 tttgaaggtg gaaatatgat ctttttgtaa gagtttttcc ggctgttgat cggcaatgag
    10501 attaaatacg ccatcattga taaagaggat agctatctct tgctcgtcac aaaaagcact
    10561 agctgcaagc aaggcatcta gcccctcacg gctaactgcc gaaccaaaag gtggctgggt
    10621 aaataaaaag gcaagtttat atttcttcat cttaaaaagt cagtaatcga tccgctttta
    10681 atactgcttg gctaaattcg cctaacccgg ctagggtaaa tccttcggct aaattatgtg
    10741 ttgcattagc tgagatttgc tcatccacca cgcctctacg ctgggcagca gcaatgcaca
    10801 aatgcagagg caagcggtgc aatttagcca attttttcca catctcgact aaattcactt
    10861 catcgcttgc tggattcact aaggcattag cattgctcac gccttcttga aaaaagaata
    10921 tttggcaaat tgtatgattg gcttttaata attcttccgc cacttggtag gctaaaaatg
    10981 ccccttgtga accataaacc ggtgatttta tcgctaatac ataatccatt aatcattgtc
    11041 ctgcttaatt tgacgaatat agagatacac agtatggcgt gaaatatcca gcttctccgc
    11101 tacttggtta atggaatctt taatatcaaa aatccctttc tcaaataacg aaatcacaat
    11161 ttgacgattt ttattattgt tagaaatttg acgatctgcc atcacatcat caatggtcgt
    11221 ttgaatcgtt tgtgaaacca aatcttctac tgaactggca aaagtaactt ctgaagcggt
    11281 atctacaggg gcaataaaag aattgagaaa ctgtgaggta ggtacttcca aattaatatt
    11341 aatgcacagt aacccgataa cgtgctgttt accattacga atcgcaatag tgatagactt
    11401 cattaaaacg ccaccttttg ccttggtaaa ataaggtttg gagacgctat ccgttgccat
    11461 atgatgcagc gatttcaatg cacggtcagt aatcggagag ccgattttac ggttagtatt
    11521 gtgtccgtta gcaatataaa ttgccgaatg ttccagaaac tctaacgaat gcaatacaat
    11581 ttcgcaatgc tcaccaatca gtgccgcaat cccatctacc atcggaaagt aagaagcaag
    11641 aatggcgtga tcttcgtcag aaaaaggcgt gaattttttg gtcataatac aaattacaag
    11701 cggttagttt tatcacattt tttgcaaata ttataataaa tctaaccgct tacgtatctt
    11761 caataattaa ggaataacga attatttctt agcatctgct gctttaaaat ctaataattc
    11821 aatttcaaat ttcaaggttg aatttgctgg aattttgcct gcggcacgat caccataagc
    11881 taatgcaggt ggcactacaa tttccatctt accgcctttt ttcaacatag gaatcgcttc
    11941 aatccaaccc ggaattaatt gatttaactg aaattcaatc ggctcaccac ggtcgtaaga
    12001 gctgtcaaat accgtgccat cagtcaaagt gcctttgtaa tgcaccttca cagtatcttc
    12061 cgcttttggt gaattgcctt cacctgcttt ttcaatttta tataacaggc ctgaagccgt
    12121 ttcttttacg ccagactgtt ttttataatc agcacggaat ttatcgcctg cagctaccgt
    12181 tgctttggtt ttttcttcgt taatctttgc ttctttcgca gataaatagg catctaacga
    12241 ttttaactgc ttttgcaaat cttcatcggt taatttaccg gttttcttta aggtgtcctg
    12301 aacaccggct aagattttat cctggttata ggtaaaaata tccttttgtg actcaatcac
    12361 accattaata tttttaccca ttaatacacc cacggcataa gaggaatcat ccacaaattt
    12421 aggatctgct ttttcttctg ccatcacatt tgtactaaaa agtgtgccaa caataagagt
    12481 aaataatgat aatttggttt ttaacataat ttttccttat aaaaataact gttaagaaaa
    12541 tttaagatag ggtaaagtgt aattcctttt cacacaacct ttttttagta aaaaatggat
    12601 aataattata cattatcggc aaaaattacc gaattggaga ctaaagttgc tttccaagag
    12661 ctgattattg aagagttaaa tcaagcactt attgagcaac aatttgcaat tgataagtta
    12721 caaactcaga ttcgccatat tgctgagaaa ttgaaagggg ctcaactaag ccaagttgct
    12781 tcacaagcag aagaaacacc ccctcctcac tattaatgct gttaaaatag cgtttttttc
    12841 aaaaaataaa caatacatta gagaaggaaa gtaatgaaaa ttggtattat tggtgcgatg
    12901 gcacaagaaa ttgagatttt acgccaagta atggttgaac ctaaagtcac tgaattagca
    12961 ggttgtaaaa tttttgaagg caaaattaac aatacccgtg tggcattatt acaatcgggt
    13021 atcggcaaag ttgctgccgc catcggcact accttactga tacagctcac ccagccggat
    13081 atgattatta atacaggctc tgccggtgga ttagatccag atttaaacgt aggtgatatt
    13141 ttgatttcaa ccgaagttcg ttatcacgat gttgatgtga ccgcctttgg ttatgaaatc
    13201 gggcaactac cggcaaaccc gccaacattt tcgccaaacg agcaattagt cgaattagct
    13261 caaaaggaag cgaaaaaagc cggttacaat gtggtttcag gcttaatctg tagcggcgat
    13321 gcctttatta acggtaatga taagattaat caaattcgtc agaatttccc gaatgtcgtt
    13381 gcagtcgaaa tggaagcagc agccattgcg caggtttgtc acggttttaa ccttccattt
    13441 gtaatcgtaa gagcagtatc ggatgtagcg gacaaagaat cccacctttc ttttgaagaa
    13501 tttctgccat tagccgcaga aaaatcttcc acgattgtat tagcaatgct aaataatatc
    13561 gattaatttt aattgttagc gaaatttcaa gtttgtaaat gtttattaaa aattgaccgc
    13621 ttgttatcgc tattttgggc aagattttgt agaatcttgt tagttttttg cctacagaca
    13681 aaaattgtag gcatttttct ttttagttat tgagagttat atgagtgctt caccaaatat
    13741 tggttttatc agcttaggct gccctaaaaa tttagttgat tccgaacgta ttttgaccga
    13801 actgcgtgcg gatggttata acatcatccc tagttatgaa aatgcggatc ttgtgattgt
    13861 aaacacctgc ggttttattg attccgcagt acaagaatct cttgaaagca ttggtgaagc
    13921 gttagaagct aacggaaaag taattgtcac cggctgttta ggggcaaaag aaaaccaaat
    13981 tcgtgaggta caccctaaag tattggaaat tacagggcca catagctatg aggcggtaat
    14041 gaaccacgtc cataaatatg tgccaaaacc ggaatttaac ccttacacca gcttagtgcc
    14101 aaaacaaggg attaaattaa caccgaagca ttacgcttat ttgaaaattt ccgaaggctg
    14161 cgatcatcgc tgcactttct gcattattcc ttcaatgcgt ggcgatttag caagccgttc
    14221 tatcgtgcaa gtattagatg aagcaaaacg cctagttgat gccggggtaa aagagctgtt
    14281 aatcgtctca caagacacct cagcctattc gttagatcgc aaaaaagaag aagaaaccaa
    14341 aaccgttttc tggaacggta tgccgattaa aagtaattta attacgctat gtgagcaatt
    14401 aggctcaatg ggcgtgtggg tgcgtttgca ctatgtttac ccatacccac acgtagatga
    14461 tttaattccg cttatggctg ccggcaaaat tttgccgtat ttggatattc cactccaaca
    14521 cgccagcccg aaaatcttaa aagcgatgaa acgcccgggt tcaatcgaaa gaaccttaga
    14581 acgcattaaa aaatggcgtg aaatttgccc tgaattaact ctgcgttcta cctttattgt
    14641 cggcttcccg ggggaaacag aagaagattt ccaactatta ctcgatttct taaaagaagc
    14701 acaattagat cgtgttggtt gctttaaatt cagcccagtg gaaggtgctg ttgctaccga
    14761 tatgccggat caagtgccgg aagaagtaaa agaggaacgt ttccaccgtt ttatgcaact
    14821 acaacaagaa atttccgctg ctcgcttaca agcaaaaatc ggcaaaaccg tacaagtaat
    14881 tattgatgac attgacgaag aaggcattat cggtcgctca atggcagatg caccggaaat
    14941 tgacggtgta gtctatgtag ataatccttc aaaccaatta gtgacagtag ggcaaattat
    15001 ttcagtaacc attacacatg cagatgagta tgatctgtgg ggaattttaa acaactaagg
    15061 atacattatg tcagcagaaa atatgcctag cgtcatccgt tttgagcagg cggtcgcgaa
    15121 aaaagattat gaatcggctt gtaccgagct actgtctatc ctttcaaaat tagatagtaa
    15181 ttttggtggc atttccaata ttgaattgaa tatgccagag cagattgaaa atttagaaaa
    15241 tgataaagct atctatttct gtactcgaat ggcggtagcg attactcgct tgtttgaaga
    15301 tcctgcatta gagatctccg aacacggtgc tatgcgtttt ctgacattac aacgctggat
    15361 agcattaatt tttgccagtt ctccatacgt aaacgcagac catatcttgc gtacttacaa
    15421 tagaaataaa gaatctgcta atccaaatac ggttgattta gatgccacat tacaagcact
    15481 aattaagttc tgtattttat acttaccgga atctaatatt ttattgaatc tagatgctgc
    15541 atggaatgct tcatcagatc tcaccgcatc actttgtttt gcactccaat cacctagatt
    15601 tattggtaca tcctctgctt ttgcaaaacg cgcggctatt ttgcaatggt tcccagaaaa
    15661 attagcgcaa attgaaaact tgaacaagct accgagcgcc atttcacacg atgtttatat
    15721 gcattgcagt tatgatattg aagcaaataa acataatgta aaacggtcgt taaatgctgt
    15781 aattcgtcgt catttacttt ctgtcggttg ggaagataga aaaattgaac agcttggtac
    15841 cagaaataat aaacctgtca tggtagtatt attggagcat ttccattcat cacattctat
    15901 ttatcgtact cattcaacct caatggttgc tgcacgcgaa catttccatc ttattgggct
    15961 aggcagtgat gctgtagatg aaatggggca acaggtattc gacgaatttc atttattacc
    16021 acaagatggc tcactatttg accgcttaag ctttttaaaa gatatctgtg ataaaaataa
    16081 tccagccgta ttctatatgc ctagcattgg aatggattta accactattt tcgctagtaa
    16141 cactcgccta gcaccaattc aagctgttgc gctaggtcat ccggcaacta cacactctga
    16201 ttttattgaa tatgtcatcg tagaagatga ctatgttggt tccgaaagct gctttagtga
    16261 acaattatta cgtcttccaa aagatgcgct accctatgtg ccttccgcat tagcgcctca
    16321 aaatgtggtc tataacctac gtgaaaatcc agaggttatc catatcggaa ttgcatcaac
    16381 cactatgaaa ttaaacccat atttcttaga ggcattaaaa gccattcgtg atagggcgaa
    16441 ggtaaaaact catttccatt ttgcattagg gcaatctagt ggaattacgc atccttatgt
    16501 ggaacgtttt atcaaaagct atttaggaaa tgatgcaacc gcacacccac attcgccata
    16561 tgatgaatat ctaaatattc tacataattg cgatatgatg ctaaatccat tcccatttgg
    16621 aaatacaaac ggcattatcg atatggttac gcttggttta gttggtgtct gtaaaacagg
    16681 ccctgaagtt catgaacata ttgatgaagg tttatttaag cgcctcgggc tacctaattg
    16741 gttaattacc caaacagcag aggaatacgt tactcaagct attcgtttag cggaaaacca
    16801 cgaagaacgc ttagcaatta gacgcgacat tattgaaaat aataaattac aaacattatt
    16861 ttctggcgat cctcgcccga tgggacaaat attcttagct aaagtgcagg catggttagc
    16921 ggataaaaac cctaaaaatg cggaagtaga agttaaaaca aagaaagtaa gaaaagcagc
    16981 tactgctagc caatccgcaa aaaaacagac aacttcgaaa acacagacag ccaaagcgga
    17041 aaaggataac gcagcaaaaa ccgaaactaa gagctagttc attaaacaaa gcccaagtag
    17101 tcatttaact tacttgggct ttttgcaaaa aagtgagtca atttaaccgc ttgtatcaac
    17161 ctaatgcggc accacttaaa ccaataaaga aacccgctat agttgcactc attaagttcg
    17221 ccaatgtgcc gccaatcact gcttttaaac ctaaacgagc aatatctgaa cgccgacttg
    17281 gtgccatact tccgatacca ctaatcaata ccgcaattgc actaaagttt gcaaaaccac
    17341 ataaagcaaa agtaattatt gccttagttt tatcgcttaa ttgcaccaca gcatcaggct
    17401 gtagatattt agcaaactca agatatccga caaattcatt aacagcaagt ttcataccta
    17461 tcatttgacc tgcaatatcg gcatcttgcc acggcacacc gattaagaaa gcaagtggtt
    17521 ggaataaata acctaataaa atttgtaagg ttagcccctc ataaccaaac caattaccaa
    17581 tgccaccaat aaagccattt aataaagcga tcactgcaat aaatgctatt aacatagcac
    17641 cgacattaat agccaaagta acacctgcac tagcaccatt agctagggcc tcaaccacgt
    17701 tatttggctt ttcaacttca acattgtcat ctgctttact ctccaaggtt tccgtttgag
    17761 gatacattaa tttagcaaat agtaacccag ctggtgcagc cataaaggag gccgcaataa
    17821 gataagttaa aggaacgccc attccggcat aaccagccat aacggaacca gcaattgaag
    17881 cagttccacc aaccataatg gcaaataatt ctgactctgt catacggcta atgtatggtt
    17941 ttacaactag aggagcttct gtctgaccaa caaaaataat tagctgccgc tgacattgat
    18001 tctgccttgg aagtgcctag tgttttttgt aatgctccac caataatttt aatcacccat
    18061 tgcatcacac caaggtagta aagcattgaa attaacgcag agaagaagat aataataggc
    18121 aatactttaa ccgcaaacac aaaaccaatg ctgctattac tcggattcgc taaattgcca
    18181 aacacaaagc taataccttc gttaccataa ttaataatat tgctcacaca atttgcagta
    18241 gctagcaatg catttcttcc cgctggaaag taaagaataa gagcggcaaa accaatttga
    18301 atcgccaaag cgcccaaaat tgtgcgaaat ttaatggctt tgcgattatt tgataataaa
    18361 acacctaagc ctaataacac aaaaacacca attatgctaa ttagtatatc catcgtaagt
    18421 ctccattagt aaatagtaat aactttttga ataccgtgcc gttttgcaaa tgctgccagt
    18481 tcatcggttt gctcgatagt gggtacaaaa cgagccaagc ctgtttcatc tctcgctcct
    18541 ttggtgtgta cccgaataat tttaagtagt acatctgggt aaggtttaag taggtcagcc
    18601 actttttcga gcaaatggtg ggcgttataa aactcattga ggtaaaccaa acgtacttct
    18661 tccaccttat caagcggtaa taatttggct aaattttgca aattgcgagc caagttttca
    18721 ggtttaatat gattcacgtt tggaagagcc tgttcaggca ctttgccggc ttggtttttc
    18781 cgatcaaagc atagcgtttg taagcccgcc ccatctcctt tgagatcgaa cagaaattta
    18841 tcggtaacat taattaacgg ctctgttgcc tcaaaatcaa aaaagccgct gctgtctaaa
    18901 taacaggtta gcccttgctc acgcaacgcc tcgaacagtg gcactaattt tttatgatga
    18961 atggttggct ctccacccga aatagtgact cctcgaataa agggaactgc ctccatcact
    19021 tgatcgtaca agtattgcaa gctaacctgt tttgcttcct tgctataacg tggaatggtt
    19081 tccgggttat ggcaatacag gcaattcagc ttgcaacctt gtagaaaaat gctggtacga
    19141 ttgccctgcc cttctacatt cgagaagggg ataatgcggt gtaacggcac aaaaatctca
    19201 gaaagtgcag ccattgttac cctgcattca cattttcttc atcacgcagc tggcggtcga
    19261 acactttcgc acaatcatcg gtgcctgaac cataccaagt ggtatcacgc aataccgctt
    19321 cgcctttgcg ataacgttca acctcgcttt ttttcaccaa gtagcctgtc actcgaatca
    19381 aatcagtatt tttcaggtaa gtggtaatgt agcgataacc ttgggcgaac gagccgtcaa
    19441 taatatccac caccgcatct aaatgatcag tgtaggtttg gtcaaaggcg aataaatccc
    19501 ccgtaccgga tgggaaatat ttatggaaag gagcagactg ttttaagtgt gccaataagg
    19561 ttggctcttc gcccacacga atgcggtgtg ccggcgtgtt cattttgtct tcagcgtggt
    19621 tatttgcccc cacttgagcg tgtaacagat attggttatt ggttcgttca acatacagcc
    19681 ctttatgagc gtcatttact gcttggagct tatccataat cagcgtcgca atttcatcgc
    19741 cacgtttgct ttgcccaaag gtttcattta aaccttcttg cttgagtaaa tgattcaccg
    19801 catcggcaag acctacaatc gcaatcatac ttgtgaagtt agtacgtttg ataaagccct
    19861 cctgaaccaa gaagctactt tcaaagaaat tgctttcttc caccaagaat ttatgccgtt
    19921 tatccatcgt ggaaagggcg agttttgcca ctttcggcag catctcattg accatttgtt
    19981 caacactcgc acaagcacgc ccgatagtac ctaaacgcag gcgggtcaga gtgtaagcac
    20041 cgccacattc cggtaaggcg ttataacagc ttgcaattcc gtattcttcg cctaaatctt
    20101 gaatgtagta ggcatcatta gcaaaagacg gtttggacac caacaagcac gctttcgccg
    20161 ccagttcggc aaattcacgc gatgttttgg ttttatcata acgaatcgtc atattcggtg
    20221 tagtgttttc aagctcaatc accgctttta agattaaacg accggctttg gtgtcattcg
    20281 gcccgatgtt agcgtggcag aaagaatcgg aaatggtttt atcgatatga tttaagaaac
    20341 gcttgatttt aatgtaatct tgctcttcat cggttataaa cggttctaac agttggtcta
    20401 aacgcccgat atacaccgga aaagtagtaa tggacggaac gtgtgaatac agaattaaca
    20461 agccgtctaa ggcttcatct aaattggttg gcggaggtaa atctaagaat tggcaacctt
    20521 tttgcatata cacattataa tcaggcaaaa tataacgtgg gcgataaatc gcataacctt
    20581 catttaaatc gcaaatcatc tgattttcaa tgtgttccca ctcttcttca gtgtagccaa
    20641 gtagttcaat cgggttaaat aaccgctcag caatattgcc taaactcatc aatttttgct
    20701 gataagtgag attttttgct tttactacct caagaatatc ttgtaatgaa gcctgcataa
    20761 cattttcctc tctattaagt gatagttcgg attttagtca aaccgaataa aaattgctgt
    20821 gacttagatc acagtttctc ttttatattc ctcaaaagca taaggcaacc gattgcgtta
    20881 ggtaacagca atttgcaaat ttttgacttt ttctgaccgc ttgttttaac tcagactgat
    20941 taaggtgtaa aatacgccac aatttaagca aaaggacaga ctgatggtac aaaaaccact
    21001 taaccactat ttagaaatgc aggagcattt tttatatgtt ccctatttac accatcaccg
    21061 ccgcattcgg gtactattgc cgaaggatta tcacaacgaa ggttgggaac gttatccggt
    21121 gttatatatg cacgacgggc aaaatgtgtt ttacagcaaa gagtcttatt cggggcattc
    21181 ttggaaaatt attccaacca ttaaatcaca ccaagaatta ccgaagatga ttattgtcgg
    21241 cattgataac gcaggagcta atcgcttaaa tgaatacggc ccgtggaaaa caaccaccgg
    21301 ctcaacccct gaaacccgaa atgccggagg cttaggggag gaatatgcca aatgggtggt
    21361 ggaaacggtt aaacccttta ttgatattca ctatcgcacc aagcctcagc aagaacatac
    21421 cttattggca ggcagttcaa tgggtggcat tatcaccgct tatatgggca gccgctaccc
    21481 acatattttc gggcatttag gggtgttttc gcttgcctct tggtttagtg agccggattt
    21541 tctgcgtttt acgcaccaat atccgttaca acccaatacc aaagtgttta ttcaggttgg
    21601 cactaacgaa ggcgatgaaa tcgattcgca ctttatctct aatacgaacc aaacctatat
    21661 tgattgttcg ctcaattact accaagcact gattcggatt ggcgtgccgt tagacaatat
    21721 ccgcctgcgg attatggcaa atgaaatcca ccacgaaatg cactgggcag atcactttgt
    21781 ggaattttta catttttcac tgctgcgcaa gtaatggata aaggtaatca tatctacatt
    21841 acacaattct gaaaaaacaa aaccccgatg tttccatcgg ggtttgttga acttgaagtt
    21901 ctgacaaaat aaatcaaaaa ttatttgatt tctactttcg cgccagcttc ttctaattct
    21961 ttcttaagtg cttcagcttc tgctttagag atgccttctt ttaatgcagc tggagctgat
    22021 tctactaagt ctttagcttc ttttaagcct aaacctgttg caccacgtac tgctttgatt
    22081 acagcaactt tgtttgcacc agcttctgct aatactacat caaactcagt tttctcttct
    22141 gctgccgctg cgcctgctgc tggagctgct gctactgctg ccgctgctga aacaccgaat
    22201 ttttcttcca tcgcagtgat taattcaacg atttctgata ctgatttaga agcaatcgct
    22261 tcaatgattt gttcgttagt taatgacata acaatcgatt cctaaagtaa aataagttgt
    22321 taaacgaata aagaagagtg cttaaaatta agctgctgct tccatttgat cgcgtaatgc
    22381 tgcaagagtg cgaacaagtt tgcctgccgc agcttctttc attgtgccca ttaaacgtgc
    22441 aattgcttct tcgtaagttg gtaaggttgc taagaatgca acatcttgtt ttttaccttc
    22501 aaaggctgca cctttaagtt caaactcttt gtttgttttc gcaaattcag tgaataaacg
    22561 tgctgctgca cctgggtgtt catttgagaa tgcgataaga gtcggaccgg taaacgtatc
    22621 tgttaagcac tcgaactcgg tgccttccac tgcacgacgt aataaagtat tacgtacaac
    22681 ttgcattgtc acaccagctt cacgagctgc tttacgtaac tcagtcattt tttcaactgt
    22741 tacaccgcga gaatccgcaa caacagctga aagtgcacct ttggcagctt cgtttacttc
    22801 agcaacaatc gcttgtttgt cttgaagatt taatgccatt ggttttagct cctgatacac
    22861 tctgcctttt caagcagaat ttacaaaaaa tcccaaaaat attaccgctt gcattgctac
    22921 aaactgcaat cttctttgag cctaaggtgt ccagaagcag agaattctgt ctgttcacca
    22981 tctatgtagg attattaagt tttcacccct acagtcttag acggggctta gataggctaa
    23041 gcaccatcag cttgctctcg caagttaagg tcgcaaatta tacagataat ctgcgaccct
    23101 gtaaagcaca aaatcaaact taatcgccaa tttctgcttt accaacaact tccgccaatg
    23161 ccttcaaccg tgcatcagac ttcgctacaa acgggttgtt ttcgtcccaa gcgtagcaag
    23221 cgagaataga ggagatcatt tggcggattt ctggttgcgg attgcgggcg tagatcactt
    23281 tgcgttcgcc gttgaagatt ttgctgttgt cttggggaat gtcattgatg tccatacgtt
    23341 ttccgatgat tgttggacgg gaatagcccc cgtccctacg attttacgaa tttaccaccg
    23401 cttccaaaag cataaaacaa gacgaaaaac gcccgctttc cggcacatag cagaggattt
    23461 tttgtccctg tttgagatcg tgggtgcgga taaattcatc gagcataatg tagatcgagg
    23521 ctgacccagt gttgcctttg gtagtcaggt tggtgaacca tttttcctgt gggatcagga
    23581 aattgatccg ctgtaaacct tccaataatt tatctcggaa ggaaccggac gagtagtgcg
    23641 gcaggaagta gtcaatctct tcagcgttga gcttgtattt cgggataatc cgctccaatg
    23701 ctttttccac cgtgtatttg acgatgtttt cgttgagcag tttgacatct tgtttcaccg
    23761 ccattgccga gcattcggca cgttgggctt cgctcattgc tttccagccg gtgtagttgc
    23821 cgtcaataaa ttccgcaccg gcgtacatac aaaccggcat ttcgttagcg taagagacca
    23881 gatcgatcca gtgaattttg aggctcaacc ctttttcgtt cggctgattg gcaagcaata
    23941 ccgcccctgc accgtctgag agcatccaac gcaggaaatc tttctcaaaa ccgatctcag
    24001 ggcgagcatc gtccagtttt ttatgatcga tttcggcacg gaaatgttca ctgcgcataa
    24061 tggcggaggc ggtttcggaa gccgttgcaa tcgcagcacg atgctcaccg atgcgtacgg
    24121 cattataggc gtgcttcatc gctgccattc ccgccacgca cacaccggca gtggtcagca
    24181 cttccatcgg ttcggcatca agcaagccgt gtaccatcac cccctgcccc ggcataattt
    24241 ggtcggggta agatgtcccc accgccaagc aagtcgctga tgttgcagaa tttcccaatt
    24301 ttttgaccgc ttgcaccgcc aactcggtac tgctgtgagt cgcttggcgg gttatcgggt
    24361 caatggcata ataacgatat tgaataccgt tagaacgcaa aatcatcttc cgcactcggg
    24421 aaggcgtttc ccccaccatt cccaacaccg cttccattgc atcgttggac acaggggcgt
    24481 tgggtaaaaa ggcggaggtg ttggtgatat agacgttaga tagcataaag tttccgtgta
    24541 gggtacgttt actcgcccga aggctcggca aaataccgtt tttgtttttc taatttttct
    24601 ttcagcagtg ggcgtaatag ccgtttaatc accgttgaaa tcgggacgac ggttaaaatt
    24661 aacgtcacta aaaagaggat gtaaaaatag agtaccgctt ggcgtaagtg cggtgaaatt
    24721 tgaccgcact tgatcagtaa tttgccccaa aggtggaaac ttctcgcacc gactttttcg
    24781 ctcatcatca atttttcgtc aattttgacc gcttgcattt ggcggaaaag ggtgctgtca
    24841 agcggttggt tttggctaaa aatgtgcaaa agttttgccc cgaagcgttt tacatcttcc
    24901 atttcgcttt cggcaatgcc agcgctcggc agcttgccga tttttttctt gccggtcagc
    24961 atccaaagcg gtgtggtgat aaaactcgcc cagtcgttag attgatccac tttgaccacg
    25021 ttgccaatga gcttcgcctc actctcggca agcagttttt tcactttttc ctgcgccatc
    25081 agccacatat tgcgacagcc gatcagcgtg atgacgggcg tatccttcaa cacttttttt
    25141 gcctgttcac tctgtaaaaa agcggtaatc ggctggctgg gggagagaaa ccacacggaa
    25201 taggcgatga tcaccaaatc gtatatttcg tgctgaaagg gcagaggctc aatcggcggc
    25261 ggtgtgaggt ggacggtttc ggggaaggtg ttaaaaaaac gcataaaccg ccacggaaac
    25321 gggtattcct gttgcggttt gattgcgagt ttttccacaa aaacgcccgc ttgttcaagc
    25381 ggttgtacaa aattttctgc caaacgggtg agttgcccgg tttgggagta ataaactaat
    25441 aatatctttt tcattatttg aaaacggtta tttccaacgt ttaaaaatca atgaggtatt
    25501 cataccgccg aaggcgaaat tgttgttcat cacataatcg gtgtggattt cccgtccgtc
    25561 accttgaagg taatccaagt cgccacagcg ttcatcgaca ttttctaaat tcagtgttgg
    25621 ggcgaaccag ccgtctcgca tcatttcaat gctgaaccag ctttccaatg caccacacgc
    25681 accgagcgta tgccctaagt agcttttttg cgagctgagc ggaattttgc cgaacaccgc
    25741 tgtggtggct tgagtttcgg caatgtcgcc ctgctcggtg gccgtgccgt gtccgtttac
    25801 atagccgact tggttcggtt gaataccggc atctttaagg gcaagttcca tacagcgttg
    25861 cattgtggtg gcttgtgggc gggtgacgtg ggaaccgtca ctgtttgcac cgtagcccac
    25921 cacttcggcg ataatgtttg cccctcgtgc taacgcgtgt tccagctctt ccaatacgaa
    25981 cattcccgct ccctcgccga tcactaagcc gtctcggtct ttgtcatagg ggcgtggcgt
    26041 gccttttggg ttgtcgttgc ggcggctggc agcatagagg ctgtcgaaga catagacttc
    26101 ggaggcacaa aattcttctc caccgccggc aagcatcatc gggatcatac cgtatttaat
    26161 ggcttcgtaa gcgtaaccga taccttggct gcccgaggag caagcgctgg aagtcgggat
    26221 aatccgccct gtcagcccga agaaaatgcc aatattggca gcggtggtgt ggggcatcat
    26281 tcgcacatag gtgttggcat tgaaaccgtc cgatttgccg gtcatcagca attcggcggc
    26341 atctttgatg tcattggtag agcctgtgga cgagccacac gccacgccca ttcgcccgtc
    26401 ttttagccag tcgaaaatca cgccgttttc gtccaacaaa ccggcctgtg ctaaagcccg
    26461 ctcgctggcc tccaccacaa attgcgacac tcgcccaagg ctgcgcaact gcttgcggtt
    26521 ccaatgtttc ggcggttgat agccgtgaat ttccgcccac tctttaccaa aagcggtaac
    26581 cgcaccaatt ccggtgatga cgactcgttt catatttatc tctttttggc ttcgggcggg
    26641 tactggatcc gcccctacga attattatcc taaagttaac acaacccacc attcacagcg
    26701 atgacttggc gtgtgatgta agcggctttt tcatccatta aaaacgcaac ggcgtgtgcc
    26761 acttcatcag gatcgcccat tcgtcctgcg gggatcattt tgagaatttc ttcgattggg
    26821 acgttttcgt ccagaatatc ggtatcaatc aagccgggcg ccacgcagtt taccgtgatt
    26881 ttacgtttgg caagctcgat ggcgagtgct tttgccgcac caataatgcc ggcttttgaa
    26941 gcgctgtaat tgacctgccc acggttgccg atcaagccgg aaaccgaggt gatacagaca
    27001 atcctgcctg ctttacggcg acggatcatc ggcatcataa tcgggtgcag gacattataa
    27061 aaaccgtcta aattggtacg caacacgcta tcccaatcct catcggttaa agcaggaaag
    27121 gcgttatcac gggtaagccc tgcatttagc accacgccgt aataggcacc atgttgttcc
    27181 acatctgcct ctaaaatcga ccgcactttt tcacgatccg ccacatcaaa ctgtaacact
    27241 ctggcatttt ttccgagatt tctgaccgct tgtgccaccg cttccgcttc ttccacacga
    27301 gaacggcaat gtaccacaat atcaaaccct tgttgtgcaa gggttaaagc aatcgcttta
    27361 ccgataccac ggcttgagcc ggtgatgaga actgtattat tcatcttata tttcctacta
    27421 tttcttgagt gtgtagtatt gggttggatc ttttggactt aagccgtgcc aagtgagaat
    27481 atttttttgt tctaaacttt ttaatattct acgagataat tctttactcc gatctaatat
    27541 ctcactagca atctttacag taatcatttc attttcatat aaatattgca ggatagtaac
    27601 ttcattttta tttaatgtcg ccataatatc ctgcgtaaaa atttcttcta ttcgttctaa
    27661 tgcccttaat gtccgatgtt caatattatt ttctaaaatc agtctgaccg cattttcatt
    27721 gggttcaaag taagaaggtg tattaagttg gtaagcgttc atttcctccg ccatacgatt
    27781 aacaccttca ttcagctctt tgacccaacc aaattcatac agcactcgtg caatcttcgg
    27841 attgcgtgaa aaacgggtat agtacatatt ttcaagcgtc acagggcgag gtaatccacc
    27901 cggactaaaa atttccaaac ggtcatcaaa catcgaaatg cgaatgcagt ccccttgatt
    27961 actgtaacta cggtgtgcaa tcgcattgac aataccttct aaccaagcaa attctggata
    28021 ctcatcaatt tttgtgaatt gcccgttttc atctaaacgt tggaactctc gtaattggct
    28081 ttttaatact gccttagcac tctccaataa cttaggaata ggctcttcaa gcataaattc
    28141 tttgacgaca ttaaaagttc taccggtcag aggtgcttta ccttcatacc gcaaaaaacg
    28201 caaacgggca ttaggaaaat aacgtgtcgg gttattccca aatagcaaaa tacaggcatt
    28261 cgtaatttgc ccttctttgt taattaaatc tcgggctttc agaatctctt ctattgagcg
    28321 atctgtgtgt aatttctgtc gatactgttc taataaatcc atatccagat cagtaaaatc
    28381 agcgcgtgct atcggttgct cttcaaaagc acgctgccct ttttcgtact ctaattgcaa
    28441 acgttgttca aaattgagtt ccaaagtttg atcttttgag cgtagaaaaa cccgatcatc
    28501 gtgagaggta atcgccctcc cactcgaagc tgtaacttca aataataaga caaaatccgc
    28561 taaacctcga ctatttacca cctcaatttg ctgataggtc accggtatcg gcattttttg
    28621 taaattgtgc agagcgtgga taaattcttc cggctgatgg gctttttggt agttaaaacc
    28681 ggtaatttcg ccattatctt caataccaat aactaataaa ccgccgtctg cattcgcaaa
    28741 accaatcaaa tgccgcaaaa tctctttcgg ttcttttctc gcacttttgc gatcaaagga
    28801 tttatcttct ttgcgagtac aaagatgttg aatgtcatag gcctcttgca taacgaattt
    28861 cctaccaact actaccaact actaccaact actacttact actacttact actaccaact
    28921 ctatttcgga ctaaacacat tcagcgcccc ttctaaaagc acttggttgt cggctaaatc
    28981 gatcagttgg cagtcgaata cgccgaagcc ggtggcatct tgaatagaca ttttgatctg
    29041 aatttgtagc tgtgagccaa tcgggatttc ttggcggtgg aggtgcagtt tgcgagtgcc
    29101 gagcaggtag cctaagcgaa ctggttcgcc ggcttgtgtg gcaatacagc cagcccacgc
    29161 cgccacgcct tgtgccataa tttcaatgct ggcgtaggtg gcaagttttc cgtgtttgat
    29221 cagcggattg tcagggcgaa tattggtttc agcggtcaaa aaatcctcac cgaatgcggt
    29281 aatgcggtcg agtaggatca tattgccact gtgaggaacc aatggtgcaa tttgttcgat
    29341 agggaaggtg aatttatgca tcgctttctc ccaaaatcag tacgctgtta ttgccgccaa
    29401 aggcaaaaga gctgcttgcg ccaatccgtc tgcctgctgc ccaacggctc tgttcatagg
    29461 tgatcgcaat gttcggcagg ttttcgtccg cttgtttatc ccataattgc gcagggagct
    29521 tgccggtcgg gttgtgttgg cgacagagca ttccccacaa aattgccgct tccaccgcac
    29581 cggcagcccc aagggtatgc ccggtgtagg gtttggtggt agtgcaagcg gtctgattac
    29641 cgaagatttt tgccacagcg aggctttcca tttgatcgtt atgaagcgtc cctgtgccgt
    29701 gcaggttgat ccagccgatg tcggctgcgt ctaaatcagc attgtgcagg gcattttgga
    29761 aagcggaaat tgccccttcc ccttcggggt gaggtgagga catatggtaa gcgtccgagc
    29821 tggaaccata acccagtaac tgaatgcgat gttcgtccag tggttcacgg ctcatcacaa
    29881 acaccgctgc gccttcgccg atgttaatgc cgttacggtt agcggaaaat gggttggttt
    29941 gttggtttga taacacttcc agcgagctaa atccgctgat agttaaaggc gaaagggtat
    30001 ccacaccacc gcaaatcacc gcatcgcaca agccggcttt cagtaaacgg gcagcagaaa
    30061 ttaacgctct tgcccctgag gtgcaggcgg tggaaatgcc gtaactcagc cccgttaagc
    30121 catacacttc ggcaacgaaa tcagacggcg cagagaagag aatttgctgt tgattaaact
    30181 gctcggtggc ataatcgccc tgcacaccgg ctttgaagac gggaatattt tcatcggcgc
    30241 cggtagtgga cgtgccgatg atcaccgcaa tccgctcacg cccgaattgc tcgatacaag
    30301 cggtaatttt cggctcaatt tctgcaaggg cgtgccatag cagttggtta ttgcggctgc
    30361 ggtgttcaat agatagttca acaggaaaat cacgcaatct agcagagact tgccctagaa
    30421 atttcggtga actatttgaa atattatgtc gtaaataagg ctgtgaagtc gtatctaaag
    30481 gagatacttt cgcattaatt aaaacattca aatgctccac gatgccatat ccaatcggac
    30541 tggtgatggc gggctctgat aaatatagtg tcattattat ttattccagt attattgtgt
    30601 aatggcacta aaattataaa attcatattc aagtgattca agcatagagg ttcaagtttt
    30661 cgcttattcc cccaatattt ccactttcca tttactgcta tctggtagcc aaatcgtaaa
    30721 ttgggatttt tccctctcaa ttttccaacc tttatctaaa taaaaaggtg gagaatgagg
    30781 gtttaatgca ttgactaaag ctgtaaataa tagctgtgcc tgcttatttg gcattacaaa
    30841 gccatctggc tcccaacctt ttttagtaag ccatactctg gcaataggag cacctaaagg
    30901 atcagtttga atccaacgcc atttattttc ataaaattga attagaagca aactttgctg
    30961 gccattattt tcaactttaa aggattttac agattcaacc tgtggcggta attgcttaat
    31021 ttgaggtaat acagtacaag cactaagcaa aaaaataaag caaaaagata ataatcttaa
    31081 cattcgtacc taaagaaaaa gaccgtagag tattaacact acggtctttt gattctatta
    31141 aaaattaaag tgatgcttga tcaaccgcaa caccagcacc cattgtagta gagatgctta
    31201 ctttcttgat gaagatacct tttgctgttg ttggttttgc ttttgttaaa gcagctaaca
    31261 atgcgtttaa gttatctttt aattgttcag ctgagaagtc tgctttaccg atagtagtgt
    31321 ggataatacc gtttttgtcg ttacggtagc ggatctgacc agatttcgca tttttaaccg
    31381 cttctgcaac gtttggtgtt actgtaccta ctttcgggtt tggcattaag ccgcgtggac
    31441 ctaatacttg acctaattga cctacaacac gcattgcatc tggagaagcg ataacaacat
    31501 caaagttcat ttcgcctttc ttgatttgct ctgcaagatc ttccataccc actaagtcag
    31561 cacccgctgc ttttgctgct tctgcgtttg caccttgtgt aaacacagca acacgagcgg
    31621 tacggcctgt accgtgtggt aatacggttg caccacgcac gttttggtct gatttacgag
    31681 aatcgatacc taagtttaca gcaacgtcca cgctctcaac gaatttagcg gttgcgaatt
    31741 tttttaacac ttcaactgct tcgttgatgt cataagcttt agtagaatct acgccagctt
    31801 taattgcttt cattttttta gtcaatttag ccattgtatt attcctctac gattaagccc
    31861 attgagcgag ctgtaccagc gattgatttc attttggttt cgatagtcgc accagtcata
    31921 tctgctgctt tagtttcagc gatttgacgg atttgctctt gagttactgt acccacttta
    31981 tctttgttcg gtttaccaga accagatttg atacctaccg cttttttcag taacactgcc
    32041 gccggtggag ttttggtaac gaatgtgaaa gatttatcag cgtaaactgt gataacaacc
    32101 ggaatcggta aacctttctc taagctctca gtacgagcgt tgaatgcttt acagaattcc
    32161 ataatgttaa caccttgttg acctaatgca ggaccaaccg gtggtgatgg gttagccata
    32221 cccgctgcaa cttgcagttt aacgtaggct tggacttttt ttgccatttt aattttcctc
    32281 taaatgggtg ataacgctga aaatcagctc ccctgttaca taaaaaatac gagtcagcag
    32341 gctggctcgt aataggtcgc aaattttaaa gaatttgcga ctatttttca agcaaaactt
    32401 tcgctttgtt gaataaatct tgttacaagc ggtctttttt ccgctgaatt ttgcacaaaa
    32461 ttgagaaaaa taaccgcttg tgtgtgaaat taattgaaat tagctctgct tttccacttg
    32521 actgaattct aattctaccg gtgtcgcacg accaaaaatc gacaccgata cttttaagcg
    32581 acctttttcg taatccactt cttcgaccgt accggagaaa tctgcaaacg gaccttctgt
    32641 aaccaaaatg ctttcgcccg gttggaattc ttttctgtgg cgtggttttt ccgctgtttc
    32701 ttgtacacgg tttagaatgc ggtctgcttc acgtttggta attggtgcgg ggcgatctgc
    32761 cgtaccacca ataaagccca ttacacgagg cacacttttc actaaatgcc aagtatcgtc
    32821 attcatttcc atttcaacca atacataacc tgggaagaat ttacgctcgg ttttacggcg
    32881 tttaccgccc acattttcaa cgacttcttc ggttggcact aatacttcac caaactgctc
    32941 ttccattttg tgaagcttaa tgtattcacg caatgttact gccacacggt tttcaaagcc
    33001 tgaaaacgct tgtaatacat accagcgttt tgagccattt tctttcactt ctacttcact
    33061 cattttagaa ccttaaactt gttacaaatg taattaatgc gacgatgatt gagtcaatac
    33121 cccataaaac caaggaaact actacgcaca ttgccaatac aatcaaggtg gtttgtgttg
    33181 cttcagggcg tgtcggccaa ataattttgc gtagttcggt tcgagactct ttaataaaat
    33241 gaattgcctt ttgcccctga tttgtaattg ccgctagtgc aacagcacca actagcaaca
    33301 ccaccaataa aagcactcga acaattaatg aaaaatgaga tgaaaaatag gcattaccta
    33361 ccgcagcaac tgctaaaaat acaatcgcaa ccagccataa tgctgtattt gcacctttgc
    33421 ttttcccccc tttttgttcg acttgctcgg gggtttttgt tttaatctca gtagccatat
    33481 ataacctaaa aaatgaataa aaaaatcaga aattatttta aagcgttaaa ttctatcatt
    33541 ttctacaaga cttgccacga tcttttatag atttttatgc aaaatcaata ttatgcggtg
    33601 ctatcacgaa tcactagctt agtcggtaat ttaacaatca tctcttctgc tgataaggtt
    33661 ttaccactca aaagagtaag tagttgttta cctgctattt ttcccatttg ctcgtaaggg
    33721 atcgcaatgg ttgtcaattt agggtaggaa atactcccca cttctaaacc acctaaaccg
    33781 gcaatcgcaa gatcttttgg aatgctcata tgtcggcgta atgcttcata taatgctccg
    33841 caagccaatt catcggataa aaaaaccaat gcatctattg cttcccaatt tagaagggct
    33901 tcagtcaaca aagttgctcc tgccgaaaac gaaatatcct ctactacgtg gtggattttt
    33961 aaaggagaaa tatgatgtgc aaataaagtc gtatgccaac tttctaaata ttgtttgaag
    34021 atggataaat cttgcttcgc cgataacaat ccaatctctc gatagccttt tttcaccaaa
    34081 aaatggatca ttttctccat tgcttcgtgg ctatcaattc caacactgag atgaatcggt
    34141 tcttttttta tcgcacctat ttctacggta gggatattgc tgtttttaat ccactcacgg
    34201 acattaggag ggcaatctaa attcaaaaac actatcgctt gaggagcatg attaatcagt
    34261 tcttgaaacc aagattcttg atcagcgatc aaaatcacca tttgcaatgc ggaatccgcc
    34321 acgcttttgc gtaatgccga taaaattaag gtattttccg ttgagctaat cgacgtcgtc
    34381 acaatgacca aattatgtga ttctgcagaa gctaattgcc gagcagaaaa atgcggaata
    34441 tatcctagtt caatgattgc ctcttcaatc cgtttacgta gtggctccga caccatttct
    34501 ggtgtacgca aagcacgaga taccgtcatc tgcccaacac caacaacttt ggctacatca
    34561 gctaaagtga ctctgcccga agatcttcga tttctacttg ttccatttgc catactattt
    34621 tcctaattgt tccatattat agggctaaat ccttaatttt cctatttaga aagaacagag
    34681 caaaatgcca actgattatt ttttatctaa ttaaatacta aaaatgctaa cgctatcaca
    34741 tttttaatat tttctgtttg atagcgttaa catttctatt ctatagtatt tctatagttc
    34801 aaaattcaga caactattca ttcaccttta atggagattt actatgaaaa ttatggcagt
    34861 atgtggttcc ggcttaggta gcagctttat gatggaaatg aacattaaaa aagtattggc
    34921 aaaactcggt gtcgaagcgg aagtgagtca taccgacctt tcctctgttg ttgctgatga
    34981 tgctgattta tttgtgatgg caaaagatat tgccgcaagc agcaatgtgc cgaaagaaaa
    35041 actcatcgtg gtaaaaaaca ttgttggatt agcagaattc gaagaaaaat tgaccgctta
    35101 ctttaaccaa taacggagat gttatatgga atcgctactc ttttttatat tagatattct
    35161 caaagtgcct tccgttctag tgggtttaat tgctctggtc ggtttagttg cacagaaaaa
    35221 atcggtatcc gatattgtta aaggaacaat caaaactatt ttaggcttct tagtgttaag
    35281 cggtggtgca acagtacttt taagctccct gactccttta ggcggtatgt ttgaacacgc
    35341 cttcaacgtg caaggcatta tccctaataa cgaagcgatt gtgtctatgg caatcgaaaa
    35401 atatggtacg gcgactgcgt taattatggc attcggtatg gtagccaata ttttaattgc
    35461 acgttttacc cgcctaaaat tcattttctt aaccggacac cataccttct atatggcgtg
    35521 tatgatcggc gtaatcctaa ccgttgccgg ctttgaaggt attcagctcg tctttgtcgg
    35581 ggcattaacc ttagggttaa ttatggcatt tttcccgact atcgctcact tctatatgaa
    35641 aaaagtaacc ggtagcaatg atgttgcctt aggtcatttc ggcacattag gctacgtgct
    35701 cgctggtgca atcggacaat tagtaggaaa aggctctaaa tctaccgaag aaatggattt
    35761 acctaaaaac ctaggcttct tacgtgatag ctccatttct atttcactca cgatgatggc
    35821 gatttactat attctcgcca ttgcttcagg cagtgaatac gtttccacat taagcggtgg
    35881 acaacattat ttagtgtatg ccaccattca agccatcacg tttgcagccg gtgtttatgt
    35941 cattttgcaa ggggttcgtt taattttagc tgagatcgtc ccggcattta ccggcttctc
    36001 cgaaaaatta gtacctgatg ccaaaccggc tctcgactgc ccgattgtgt tcccttatgc
    36061 tcccaatgcg gtattagttg gatttcttgc cagtttctta ggtgggattt taagcttagc
    36121 gattttagga caacttaatt gggtgttaat tttacctggc gtagtgccgc acttcttctg
    36181 tggggcaact gccggcgtat ttgggaacgc caccggcggg cgtcgtggtg caattatcgg
    36241 ggcttttatt cacggtatat taattacttt cttaccggta ttcttattac ctgtactagg
    36301 ttcattaggc tttgctaaca ccactttctc tgactcagac ttcggtggta ttgggattgt
    36361 gttaggctat atggctcaat acttcgataa gaatatcatt acgctcatta ttatcggctt
    36421 attcactctg ttggtagcct ataattattt ggcgaaaaaa ccggcagagc cgaaagccta
    36481 attaaaatca gatgttattt gctacctgcg aggaatcttc cctaccattt attgatggta
    36541 gggaattttg tttagttaaa cgacaacgct cttgttcaat acccattatc catcacatac
    36601 cccccactca cttgtttaat tacgccggct aattccagcc ccagtaattc aactagcaat
    36661 gtctcaatcg ttaactctgt agctctggct aaatcgtcaa tcgctatagg ctctaagctg
    36721 atatgctgat aaatttgctg ctggcaagcg gtcagatttg gcggattttt tgcaaatttt
    36781 tcgctacttt tgaccgcttg taaagatgtg cttactattg gcttaggctc atcaaacaaa
    36841 gggatttgtt gaggttgata ttgagaggcg accgcctcta aaatatcttc caccccctcc
    36901 acaagcaacg ccccttcttt aattagcttg tggcaacctt gtgcgtaagg gttttgcacc
    36961 gcattcggta acgcaaacac ctcccgacct tgttcaaggg catagcgagc ggtaattaaa
    37021 gagccactat taatggttgc ttcaatcacc aaagtgccga gcgataaacc gctgattatg
    37081 cggtttcggc gtgggaaatt ttcagcaatc ggaggctgat taggtgaaaa ttcagacacc
    37141 aacgcaccac ctgactcgac aatttgttca gccagttttt gatggcgtgc ggggtaaatc
    37201 cggtttaagc cactgcccaa cacagcaatc gtaatacctt gatattccac tactttttta
    37261 tgtgcaaaac cgtcaatgcc aatcgctaaa ccgctagtca ccgccatatt gtgcttcacc
    37321 aagtcagcgg caaattgccc cgcccaatat tcaccgtagg gcgaataatc ccgactccca
    37381 acaatcgcaa tttgcggtaa ggaaaggctt tcgacattac cctttacaaa taaaatcggc
    37441 ggagcggtgg aaatttgccg cagcaagaaa ggataagctt tatcaaataa actcaggatt
    37501 tgctgattcg gctgctccgc ccaagttagt gcctgctcaa tccaattttt atccggatta
    37561 aaccaacgct gaatctgctt ttcattccag ccgatctgcc ttaactgtgt tttatcgtag
    37621 gcacaaaatt cggcaaaatc caactctgcc aataaccgtc cgattcgctg cggaccaatt
    37681 tgcacctgca acaaacgcaa taaatcatac tgatatgcca ttttttcgcc ctcaaaattt
    37741 ccctaataat aagaaaacgt ttagaataga caaacgaatt ttttaaactt ttcgagagag
    37801 atcacaaaaa tggcaatatt agatgttgtg ctttaccccg atgagaaact ggcaaccgtt
    37861 tgtgaaccgg tggaacaggt ggacgaagca ctgaatcgtt ttatcgatga tatgtttgag
    37921 acaatgtacg aacacgaagg tattggctta gctgcaccgc aagtgggcgt acttaagcgt
    37981 gttattacta ttgatattga gggcgacaaa accaatcaag tggtgttaat taaccctgaa
    38041 attttagaaa gcagcggtga aaccggcatt gaagagggct gtctctccat tcccgggcat
    38101 cgtgccttag tgccacgcaa agagaaagtg aaagtcaaag cccttaaccg ccaaggcgaa
    38161 gaaattatca tcgatgccga tgatttattt gcgatttgta ttcaacacga aatcgaccat
    38221 ttaaacggcg tgctttttgt tgaccacata tccaatttaa aacgccaacg catcaaagaa
    38281 aaaatgcaaa aattgaaaaa gcaaattgca cgagcgaaat aaccaggcac aagcggttaa
    38341 aatggcttaa aaatttgcaa attaagtgtg atgacacgat aataaccaca gttcaacttt
    38401 agaaaggata aaaatatgat tatcgtcacc ggcggcgcag gtatgattgg cagtaacatt
    38461 gttaaagcct taaatgaaat cggtcgcaaa gatattttag tagtagataa cctcaaaaac
    38521 ggggaaaaat ttatcaactt agtggactta gatattgcgg attattgcga taaagaggat
    38581 ttcatcgcct ctattatcgc cggcgatgat tttggtgaga ttgatgcggt tttccatcaa
    38641 ggggcttgct cggcaaccac cgaatgggac ggcaaatact taatgcaaaa taactacgaa
    38701 tattcaaaag agttattgca tttttgctta gatcgccaaa ttcctttctt ctatgcctca
    38761 agtgcggcaa cctatggcgg acgttcggat aattttatcg agaaacggga gtttgaaggt
    38821 ccattaaatg cttatggcta ctccaaattc ctgtttgatg aatatgtccg ccgtattttg
    38881 cctgaggcag aatcaccggt ctgtggtttc aaatatttca acgtatacgg gcctcgtgag
    38941 caacacaaag gttcaatggc aagcgtggca ttccacttaa acaaccagat gttaaaaggg
    39001 gaaaatccaa aactatttgc cggctcagag cagttcttgc gtgattttgt ttatgtggaa
    39061 gatgtggcaa aagtgaatct ttgggcgtgg caaaacagca tttctggcat tttcaacctc
    39121 ggcaccggaa aagcggaatc tttccaagaa gttgcgaatg cggttatcaa ataccacggc
    39181 aaaggcgaaa ttgaaaccat cccattcccg gatcatttaa aatcccgcta ccaaacgttc
    39241 actcaagcgg acttaaccaa cctaagagcc gctggctaca caggcacatt taaaaccgtt
    39301 gctgaaggaa cagcggaata tatggcgtgg ttgaatcgct aatcaaacgt tgttaaaaaa
    39361 gcagaaagag ctacgaaatg tagctctttt tgttataagg ttataaggtt ataaggatta
    39421 gaatgctgtc gtatcttgga ataagcctac ttttaaatca gtagcagtat agatcactcg
    39481 cccgtccact tcgacttcac catcagcaac ccccatcact aacttacgat tgaccacacg
    39541 tttcatatgg atacggtaag taactttttt cgctgtcggt aaaatttgtc cggtgaattt
    39601 tacttcacct acgcccaatg cacgcccttt gccttcgcca ccaatccagc cgagataaaa
    39661 accaaccagt tgccacatcg catctaagcc taagcaaccc ggcattacag gatcgttaat
    39721 aaaatggcag ttaaaaaacc ataaatccgg tttaatatca aactcagctt caatataccc
    39781 tttttcaaaa ttgccttttt cttggttcat ttcaatgatg cgatccatca ttaacatcgg
    39841 tggagccggc aattgaggcc ctttttcacc gaataattct ccttttcctg atagcaaaag
    39901 ctcttcgtaa gtatagcttg gtttgataat tggtgtacaa ctgttcatta tttttaaaat
    39961 cctgtaaagt gaaaaaagcc tgttatatca ataactgata aatcaggctg atagtaacag
    40021 acttttaatt cagtgaacag ttgtaagctg acttgtcgga tcagtctagc tttatctttt
    40081 tgcaaatttt gcttaaaaat gaaccgcttg tttcttcact ttcccgctca tctagattct
    40141 ggtgaatcaa ggtaaataat gctgtttggg ctgagttagg ggctttctca tcatcataaa
    40201 aatcccgctc aaacagaatc gctatggcat caaacacatt ttccaccgtc caaattttaa
    40261 atagaccttg ctccactgcc tcaacaactt ctgaacttaa actcaaatgg ctaacacagg
    40321 ccgccggaat aatcacacct tgtttccccg ttaattggcg agcgtgacaa atattaaaga
    40381 agccttcaat tttctgattt accccgccca cgcttagcac attcccaaat tgatcgatag
    40441 cacctgtcac cgcaatagat tgtggcaagc caactttagc taaggcactc actagtacat
    40501 tgaaaatcgc aagagaagaa ctatccccat caatttcact ataggattgt tcaaaagcaa
    40561 tcgaagctga aaacggtaac tgggttggta gttctaacag attcgctaaa caagattgag
    40621 cgataataat acctttggag tggatatttc cccctagctc cactttacgc tcaatatctg
    40681 taatttcgcc atcaccatat tgtacattac aactcatgcg taagggctcg ccaaaactat
    40741 gcggaatgcc ttcaaactca atgaccgata agccattgat ctgcccaatt tcctctcctt
    40801 cggtttcaat ataaagttga ttagtcagaa tatcacccac cgtatattga tttaatatcg
    40861 atgattgctg ttctaaataa tcaaaataac cttttacctc gtcaatttcg gtcacatttg
    40921 ggtaaaaatt ttgaattcct aataaatgtt ttctcaataa tgtaggggaa atagacacca
    40981 actctcggct ttcactttca cgtatatagg cctgtaaaaa ttgattaagc gctgtggaag
    41041 ttaatcgctt attgatgaga ttctcagcat aattctgaac ataacctccc cactgctcca
    41101 cattatccga taatgataag taggatttta tttcggtata ttgcccaaat tggtacaacc
    41161 catcatcata agcagataaa gtagaaatat cttctctttc ccctactaaa atcaatttaa
    41221 atgttgattt ctctttagcc gataaatagg gtgagtgatt aacagaattt ggctcatatt
    41281 caccaaataa taatgcctgt tttagcttat cccattgggt aatatccaat aagagcgaac
    41341 ggatattaac aattaaaatt cccttatctg cctcgtgaat tgcaccttta acatattctg
    41401 ttttcagctc tctttccaaa aacacagaat aaccaaatag actattttta ttgaaatcca
    41461 ttttgctaat aatcggcaga tctacactat attttttcag atattccgtg atttcattga
    41521 taaattccgg aaaaatctca gattttaaga ctaataaagc accaaactga gattgtaaaa
    41581 attgatttaa cgcttgtttt gcttgaggtt gaaaatctaa aaaattcaat ttctcatcta
    41641 aacgagagaa atcattttgc attactaatt tttggctact aagtaaagaa agggtcacaa
    41701 atctgcctca ttattgaaaa tttggtttat tatacaaaat tccgctatac ttgctaaata
    41761 tagcttactt tttcctatca tattcagatt atgcgatatc agaaactcat cacccaagaa
    41821 acaacttgga aatggcaata tctcctaaaa aaacatcgtg aaggagaaaa tattactaag
    41881 tacgaagaac aaagcttgat cgatttaaaa gttcagttcc tctctacttt gcaaaactct
    41941 ccggacgaag tggaaaaatg gattaagtcg gaaatgacgc ctgagcaacg taagaaaatg
    42001 cgtcaatcag tacgcgccaa acgcaaacgc ttctttaatg ctgaaaagca aacaaccaag
    42061 aaaaaatcca ttgatttaga gtattcgagc tggttaaggc tctctaaata tgccaaaagc
    42121 caaaaactaa cgctttctga agctattgtc aaattaaccg atgaactcga aaataaacaa
    42181 ctttacttag agcaagttgc taaaatgaaa tcaagtttaa aagatttact gaaataaaaa
    42241 aagaaaaaag cccactaaca agcgggcttt ttttgattca atttttcaac tgaataacta
    42301 tattacatag ttacttcttt tgaaccttga acttggattt caacacgacg atctggtgct
    42361 aagcaagcga ttaatgcttt acgaccttta actgcatcac atgtgtgacc agttactggg
    42421 tttgcttcac cgtaacctac agctgttaca ttagctgggt tagtaccttt agaaacgatg
    42481 taattagcta ctgtttcagc acgacgttgt gaaagtttta agttagatgc ttctttaccg
    42541 atacggtctg tgtaaccatt aacttggata gctaggtttg ctaagcctaa gttgctgatt
    42601 tcagcgtgtg ctgcatctaa agaagttgct gctgctggtt ttaagcttga tttaccgaaa
    42661 tcaaataaaa catcagagct gaatgcgaag tttttagtta caacttctgg tgcttcaact
    42721 ggtgctgcac cttgaccgaa acggtatgat aaacctgcag atactgagtg gatatctggg
    42781 ctgtattgga aatttgtacc tgttggaata ctaactgttt tacgaactgc cttatctacg
    42841 ttaccaacac gatttaagta ttgatattca acacgagcag ctaattcagg agtaattgca
    42901 tactcaagac cagcacctaa taatagagat ggttttaagt tgtgagcttt aatgcgtgaa
    42961 tctttatcta cacgttgttg tacgtagtaa tcgttgcgaa ctaatgcaac acctacttta
    43021 ccgtaaacat ctaagttagg aacaacttcg tagcttggtt ttaagcttaa gtgcgcaccg
    43081 tgagctgaat gtttagccgc agttctttct ttatcatcag caaatgtagt gttaccacga
    43141 acacgaccaa agtagtcata acctaattct gtcgctaaac caaagttgtt ttggtttaag
    43201 atttggtaac caccgaatac accgtaagtt acagagttac ggttaatacc gtatttaaga
    43261 tcgaatccac caccatctcc ttcgtggtca aattgagtta aaccgtcgtg gaatgatgcc
    43321 caaccagctt tagcacctgc gtagaaagtg ttagcttgtg gagctgcttg agctactgca
    43381 gctgctgata atactgctaa tgcaactaat gtttttttca ttttgatgat cctcttaaat
    43441 attgtcatcg attaaaataa attcttaata cccacaaaaa gtattaaaac tttaacttta
    43501 tgcttcaaca ttataataag aagcaagata gc
//
LOCUS       DANLUT010000006        38443 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLUT010000006 DANLUT010000000
VERSION     DANLUT010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 38443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38443
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            24..239
                     /locus_tag="PXB38_000283"
     CDS             24..239
                     /locus_tag="PXB38_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL5352650.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     YEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(298..1455)
                     /locus_tag="PXB38_000284"
     CDS             complement(298..1455)
                     /locus_tag="PXB38_000284"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL5352651.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXB38_000285"
     CDS             complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXB38_000285"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL5352652.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAGDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLAE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLATRSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRLYFPENRVLSGLFEVIKRIFGMRVEEQKEVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGILGNAE
                     PVDCTQ"
     gene            complement(3751..4491)
                     /gene="pflA"
                     /locus_tag="PXB38_000286"
     CDS             complement(3751..4491)
                     /gene="pflA"
                     /locus_tag="PXB38_000286"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL5352653.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMPPSKEDLERIQKIIESYGHTVKF"
     gene            complement(4740..5765)
                     /locus_tag="PXB38_000287"
     CDS             complement(4740..5765)
                     /locus_tag="PXB38_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5352654.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVQSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(6000..8324)
                     /gene="pflB"
                     /locus_tag="PXB38_000288"
     CDS             complement(6000..8324)
                     /gene="pflB"
                     /locus_tag="PXB38_000288"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL5352655.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLRAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(8414..9238)
                     /gene="focA"
                     /locus_tag="PXB38_000289"
     CDS             complement(8414..9238)
                     /gene="focA"
                     /locus_tag="PXB38_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL5352656.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     AGPEFWTAINVDQTQFADLDLYHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
     gene            9439..9933
                     /locus_tag="PXB38_000290"
     CDS             9439..9933
                     /locus_tag="PXB38_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5352657.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWSPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            complement(9987..10856)
                     /gene="htpX"
                     /locus_tag="PXB38_000291"
     CDS             complement(9987..10856)
                     /gene="htpX"
                     /locus_tag="PXB38_000291"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL5352658.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(10944..12026)
                     /gene="dinB"
                     /locus_tag="PXB38_000292"
     CDS             complement(10944..12026)
                     /gene="dinB"
                     /locus_tag="PXB38_000292"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL5352659.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKLVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKIAS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVESYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            12149..13060
                     /locus_tag="PXB38_000293"
     CDS             12149..13060
                     /locus_tag="PXB38_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL5352660.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRYMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            13215..14981
                     /gene="aspS"
                     /locus_tag="PXB38_000294"
     CDS             13215..14981
                     /gene="aspS"
                     /locus_tag="PXB38_000294"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL5352661.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKKTLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNAEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQIQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
     gene            15301..19665
                     /locus_tag="PXB38_000295"
     CDS             15301..19665
                     /locus_tag="PXB38_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5352662.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     QFFVEATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVINNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTPGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNEVANGKLLITGGTNL
                     NGTLSAEGTSEIILSGRPTPHAYDKVANKEVLIEGDWINRSFNATIFAAKDNGKLEIS
                     RNVANINGNFNLTDNATAQIGFTQGTSQACIRSDRTGVATCNINATLSETDLNSWERT
                     KVAGNVSLADNSTFSLGSKADLTGSITAQESTKVQLNDGSIANLTGLSTTGIFNGANG
                     STVNLSGVWTTLTNTVVDVLNVANGSQIHLNTPTATKQNTLTANTLTGNGIFKFVADL
                     TKTASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEY
                     RYHLLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPE
                     YTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQN
                     WKVWSKTDYQTTEHRSAGYGFKQDANVIHLGLEKALDNQVTLGMILSQSKARNNFDHY
                     YSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQANTVKLDRSVFVTGLSIG
                     KAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDLLALQAGLSINKTLELNGL
                     QIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAGISANYRNINAGIQAGFLT
                     GNTLNKQRYISFKVTYEW"
     gene            complement(19740..20576)
                     /locus_tag="PXB38_000296"
     CDS             complement(19740..20576)
                     /locus_tag="PXB38_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL5352663.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERTPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAECHDYRYSDEELK
                     GLAELLFNRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            20684..21559
                     /locus_tag="PXB38_000297"
     CDS             20684..21559
                     /locus_tag="PXB38_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5352664.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLLVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            21695..22135
                     /gene="nudB"
                     /locus_tag="PXB38_000298"
     CDS             21695..22135
                     /gene="nudB"
                     /locus_tag="PXB38_000298"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL5352665.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            22148..22888
                     /locus_tag="PXB38_000299"
     CDS             22148..22888
                     /locus_tag="PXB38_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5352666.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            23018..23545
                     /locus_tag="PXB38_000300"
     CDS             23018..23545
                     /locus_tag="PXB38_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352667.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKAAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            23612..24190
                     /gene="ruvC"
                     /locus_tag="PXB38_000301"
     CDS             23612..24190
                     /gene="ruvC"
                     /locus_tag="PXB38_000301"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL5352668.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(24256..25536)
                     /gene="murA"
                     /locus_tag="PXB38_000302"
     CDS             complement(24256..25536)
                     /gene="murA"
                     /locus_tag="PXB38_000302"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL5352669.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNTAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(25646..25906)
                     /locus_tag="PXB38_000303"
     CDS             complement(25646..25906)
                     /locus_tag="PXB38_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5352670.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(25939..26262)
                     /locus_tag="PXB38_000304"
     CDS             complement(25939..26262)
                     /locus_tag="PXB38_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL5352671.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(26274..26909)
                     /gene="mlaC"
                     /locus_tag="PXB38_000305"
     CDS             complement(26274..26909)
                     /gene="mlaC"
                     /locus_tag="PXB38_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL5352672.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(26955..27479)
                     /gene="mlaD"
                     /locus_tag="PXB38_000306"
     CDS             complement(26955..27479)
                     /gene="mlaD"
                     /locus_tag="PXB38_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL5352673.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(27500..28276)
                     /gene="mlaE"
                     /locus_tag="PXB38_000307"
     CDS             complement(27500..28276)
                     /gene="mlaE"
                     /locus_tag="PXB38_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL5352674.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(28269..29072)
                     /gene="mlaF"
                     /locus_tag="PXB38_000308"
     CDS             complement(28269..29072)
                     /gene="mlaF"
                     /locus_tag="PXB38_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL5352675.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGSSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIRERTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            29297..30691
                     /locus_tag="PXB38_000309"
     CDS             29297..30691
                     /locus_tag="PXB38_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL5352676.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(30743..31504)
                     /locus_tag="PXB38_000310"
     CDS             complement(30743..31504)
                     /locus_tag="PXB38_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL5352677.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(31491..31943)
                     /gene="nrfF"
                     /locus_tag="PXB38_000311"
     CDS             complement(31491..31943)
                     /gene="nrfF"
                     /locus_tag="PXB38_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL5352678.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTSKNKGNKNENA"
     gene            complement(31933..32466)
                     /locus_tag="PXB38_000312"
     CDS             complement(31933..32466)
                     /locus_tag="PXB38_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5352679.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWASWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(32463..34367)
                     /gene="nrfE"
                     /locus_tag="PXB38_000313"
     CDS             complement(32463..34367)
                     /gene="nrfE"
                     /locus_tag="PXB38_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL5352680.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(34637..35584)
                     /gene="nrfD"
                     /locus_tag="PXB38_000314"
     CDS             complement(34637..35584)
                     /gene="nrfD"
                     /locus_tag="PXB38_000314"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL5352681.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTNALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(35584..36261)
                     /gene="nrfC"
                     /locus_tag="PXB38_000315"
     CDS             complement(35584..36261)
                     /gene="nrfC"
                     /locus_tag="PXB38_000315"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL5352682.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(36261..36917)
                     /gene="nrfB"
                     /locus_tag="PXB38_000316"
     CDS             complement(36261..36917)
                     /gene="nrfB"
                     /locus_tag="PXB38_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL5352683.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCVSC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(36936..38438)
                     /gene="nrfA"
                     /locus_tag="PXB38_000317"
     CDS             complement(36936..38438)
                     /gene="nrfA"
                     /locus_tag="PXB38_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL5352684.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT        11320 a         8382 c         7667 g        11074 t
ORIGIN      
        1 gcaaccacta ttaggagtta aatatgtttc cagaatttcg tgatctcata acccaattaa
       61 agcaaaacaa ttcacatttt gctcgcttat ttgataaaca taatgagcta gaccagcgta
      121 ttaagaatat ggaggcaaat attgaactgg caacatatga agaagttgag gcactaaaaa
      181 aagaaaaatt gcatttaaaa gaccaacttt atgcaattct aaaacaagaa tcggcttaac
      241 ctaaagtaaa agctcagaaa atattctgag ctttaatttc ggtcatatta gacaatatta
      301 cagttttacc ggctcaataa tttcgcttgg gtagcaaccc aacactttga ggtagctggt
      361 aacttgctcc aattccgcca atgctttttg ggtgttctcg gaatgaatat ttgcctccag
      421 ctccacataa aacatctctt cccaaggttt gccgtaaatc gggcgggatt ccagtttcat
      481 catacgaata tgatgatttt tgaataccat taacgcatcg accaatgcac ccgcctgttg
      541 cgtggtggtc attaacagta acgttttggt ttgtacctgt ggcgaaacct gcacagcctc
      601 tttggcaaca acaataaaac gggtgatatt gtgagcttga ttagcaatat cggttttgat
      661 attcgtcaag ccatacaatt ttccgccatc ttcattgccc aaggcaacaa tattcggctt
      721 attcaagcga gccaccattt gcattgcgtg cgagctgctt tcgcaatatt tgatatgtac
      781 tttatctagc ccggctaaaa attggctaca ttgctgggca ggctgagggt gggtgtaaat
      841 ggtatccacc tccgccaaat caaccgtgcc gtttgccaat acacaatgtt tgattgggta
      901 cgccaattca cccactaagg ttaaatcggt atgctgcaat aaatcataca cttcattgat
      961 cgaacctgaa gtcgtgtttt caagcggcag tacgccaaaa tcggcttcac caaggctgac
     1021 tttctcaaat acttcattaa aagaatggca gcttaattcc gccaatgtgc cttgatattt
     1081 tttggcaaac tgtcgagatg ccatattgga ataagagcct cgcattccca aaaacgcaat
     1141 cgaaacctgc tcttcttttt gtgcattcaa tttattttgc agataatttt gctgagtcag
     1201 cactgaatct tcaataatac gttggaaaat ttgggtcaca tattgcggat caagctggta
     1261 attctccgct tcggcaaaat ttaccagttc ttgaagcaaa atcttttccc gttctaaatc
     1321 tctcaagggt ttttgtgtga tttctttgct ccgcaccaca tcaaaggcta agcggtgacg
     1381 ttctgccagt agctttaata aattgcggtc taagttggtt atttgggttc gaatatcggc
     1441 taaatctaaa gacattattt cactctctgt caggctaaat gctgaaaatt ataacgagtt
     1501 gcaaaagaaa gaaaagacaa gcggtcaaat ttacaaaaaa atttgcaaat ctaaccgctt
     1561 gtaaaacgtg tttactttat tgagtgcaat caacaggctc ggcattacct aaaatgcctt
     1621 tgtgtctgag caaggcatca agggttggct tacgcccacg gaagcgttcg aacagcacca
     1681 ttggctcttc tgaaccgcct cgggttaaga tattatctaa gaaagactgc cccgtttcag
     1741 ggttgaaaat cccctcttcc tcaaagcgtg aataggcatc tgctgaaagc acttccgccc
     1801 ataaataact gtagtagccc gccgcatagc cgcctgcaaa aatatgcgag aaactgtgtg
     1861 gcgttctcgc ccactctacg cctttggcaa cagcgacttg gtctttcacc tctttaagta
     1921 aggctaacac ttgtccttgt ttgctcgggt catattcggt gtgtaggcgg aaatcaaaca
     1981 agccaaattc taattggcga agcacaaaca ttgccgcttg gaagtttttc gccgccaata
     2041 attgctccaa tttcgctttt ggtaacggct cgccggtttc ataatgccct gaaataaagg
     2101 ctaatgcctc ttcttcccag caccagtttt ctaagaattg gcttggcaac tccactgcgt
     2161 cccacggcac gccgttaata ccggcaacat cgcccacatc aatttcagtc agcatatggt
     2221 gaatgccgtg tccgaattca tggaacaagg tagtcacttc atcgtgagta aacaatgccg
     2281 gtttatcgcc aatcggttta ttgaagttac aggttaaata tgccaccggt ttttgtaatg
     2341 tgccgtcagc caagcgtttt tggttgatgc aatcatccat ccacgcccca ccacgtttgt
     2401 tttcacgagc gtataaatct aagtagaacg agccacgcaa gcggtcattt ttatcaaaaa
     2461 tattgaaaaa acgtacgtct ttgtgccata catcaacctc tttttgttct tccacacgca
     2521 taccgaaaat gcgtttaatc acctcaaata agcccgataa tacacgattt tccgggaaat
     2581 acaggcgaag ttcttcatca ttgactgaat acaatgcctg tttttgtttt tcgctgtaga
     2641 acggaatatc ccataaatct aaatgttcaa tgccgaaatg ggctttagca aattttttca
     2701 aatcgcataa ttcatttttg ccttgagctt tcgagcgagt ggctaaatcg ttcaagaaat
     2761 ccagcacctg ttgtggattt tccgccattt tggtggctaa tgaataatca gaataggtct
     2821 taaagccgag tagttgggct ttttcgtgac gcagttttaa gatctcatca atcaccgcac
     2881 tattatccca tttgcctgca ttcgggcctt gatcagaggc acgagtcaca taagcacggt
     2941 acatttcctc acgcaatgct ttgttttcac aataagtcat caccggcaaa taacttggga
     3001 tttcaagagt gaagcgatag cctttcttac ctttgctttc tgcggataat tttgccgctt
     3061 ctaatgccga ttccggcaag cctttaagct gtgcttcatc ggtaatcaca atatcccagc
     3121 ccattgttgc atcaagtacg ttgttgctaa attgcgagtt gagttccgcc aaacgagctg
     3181 aaatttcgcc gtagcgtttt tgcttctctg ccggcagtga aatgcctgat aattcaaaat
     3241 cttgcaagct gttttcaatc gcctttttct gtgcaaccga ataagtttca aactcagggc
     3301 tgttttttaa cttcacatag ccttgatata acccttgatg ttgccccgcc caagtgctgt
     3361 attccgataa taacggcaag cacgcttggt aagcctcacg caactctggg gaatttttca
     3421 ccgcatttaa atgcccgacc ggtgaccacg cacgggagaa tttatcccca gccattgctt
     3481 gtggcatata gaaattttcc cacgtcgggt tttcaatttg tgcgactttt tcaacagttt
     3541 cacggcattc tttgatcacc gcttctaccg ccggtttaat atgttcaggt ttgatttgtg
     3601 agaacgcagg caagcccgtg taatttaaaa gagggttaga catattaatg ttccttttta
     3661 gatgtagggg cgaaatattt ttcgcccttt taaaaataat atgacaaggg cgaaaaatat
     3721 ttcgccccta caattcagga ttttacaaaa ttaaaatttc acggtatgcc cgtaactttc
     3781 aatgattttt tggatacgct ctaaatcctc tttagacggt ggcattaccc cttccagctc
     3841 atatttatag cctaaagttt cccatttatg agctcctaaa cgatgataag gcagaagttc
     3901 cactttctca atgttatcca ttccttgaat aaactgccct aaacgatggg cagaatcatc
     3961 gtcatcggta taacccggca cgaccacata gcgaacccaa gtcggtttat ttaatttgtg
     4021 tagataacgg gcgaaatcaa gggtacgctt attcgacacc ccgactaaat cttggtgaac
     4081 ttcatcattg agctgtttta aatccagcaa gaccaaatcg gtcacttcaa gcatttcatc
     4141 caccaccggg ctataatggc gaacaaaacc attggtatct aagcaggtat taatgccttc
     4201 agccttacag gcacgaaacc aatcccgcac aaactccatt tgcaacaccg cttccccacc
     4261 cgaagctgtt acaccaccgc cggttgcttt cataaaatgc ttataagtcg tgacttcttt
     4321 catcagctct tcaaccgtaa tttccttacc accatcaaga tcccaagtat cacgattatg
     4381 gcaatattta caccgcatca aacagccttg caagaacaga ataaaacgaa tccccggtcc
     4441 atctaccgta ccgcaggatt caaaagaatg gatacgtcca acaacagaca tttgtcacct
     4501 caaccctcaa aaaattttga gaaattgtag caaattttta tgttgttcgc agaaataaat
     4561 cacaccggta tattttaaga aaggagaaag tcatactatt ttttgcctat ttcaggaata
     4621 ggcttttatt aatctattga ctccatcaac atatcaacca aatatgttta aatttttgca
     4681 ttttttaaag ctattttgac cgcttacaag cagtcggttt ttctgaaaac tttgcaaacc
     4741 tagccggcgt ggtatttggc ggcgacctct tttaccagta agtcgaaatc gctttcgtag
     4801 gtgagatcct gcttgactcg gtatttttca aattcgctga gggcgaaaga tttagcaatt
     4861 tcagcggtaa ctttgccggc atcttgtaag atttctcggt cggtggcggc aagaaagcgg
     4921 ttaaggcggg tttcccagtc tgccattgtc atcggaattt ggcgttctgc catatcttcc
     4981 gccatatcca aataggcaga gaccagccgt tgtagttgtg ctaattcatt atccgataaa
     5041 taatttttgg caaccaccac atcaaagggg taaattttgc cttgcggagc gtctttccaa
     5101 ttcgttagcc ccatattcgg cttttcagcg ttggctcgtg ccataatcag ctcggcggcg
     5161 gtatgcccgt gaattgccca atggagcttg ttctgcacgg tggcaaaaaa gcgtttggtg
     5221 gcggttgcgg tgcggtcgta gtccacggcg gtagcgtaaa tgtcggtgat tttttggtag
     5281 aacttgcgtt cggataaccg aatttcccga atacgagcaa gctgttcttc aaagtatttt
     5341 ttgcccaaaa tcgtgccgtc atttttcagc cgttcatcgt ccatcgcaaa gcctttaatc
     5401 gcaaagctct gcacgatttc ggttgcccat ttgcgaaact gcaccgctcg ctcggaattg
     5461 actttataac ccaccgcaat aattgccgac agattataat gcttggtgtg gtagtttttg
     5521 ccgtcttggg cagttatcca aaaaaattgg ataactgaat tttcagctaa ctcattgtca
     5581 ctaaagattt ttttgagatg atagctaatg gttcgtacat caacatcata caacaccgcc
     5641 atcatttttt ggctaagcca tacattttca tcggcgtaaa cggcatcaac ttggctttcg
     5701 ccggtagctg taataaaagt gaggtattcc gccacagagg aacgaattaa atcttgctta
     5761 gacatctctt tctcccatat agaacactgt aattataaac aatattacga aagctgtgta
     5821 aatgaatagc caatttttcg agcgagatca caaaaaaacc gcttgcggca taaatgctac
     5881 aagcggttga ttattactca caaaattgtt tccaattttg ttcgctccta cggagccgtc
     5941 ggcaaagcca acgttcaaaa cgcaatgcgt tttgtggcta aaagttttgc aaattgtaat
     6001 tacatacttt cagtgaaggt gcgggtaatt acgtccattt gttgctcttt ggttaaagag
     6061 ttgaaacgta ccgcatagcc tgaaacacga atcgttaatt gcggatattt ttcagggtgt
     6121 tctaccgcat ctaataatgt atcacggttt aacacgttca catttaagtg ctgaccgcct
     6181 tctacagttg cttcgtggtg gaagtagccg tccattaagc ctgcaaggtt acgtttttgg
     6241 gcttcgtaat ctttacctaa cgcatttggt acgatagaga aagtataaga aataccatct
     6301 ttcgcatagg caaacggtaa tttcgccaca gaagttaatg aagctaccgc acctttctgg
     6361 tcacgaccgt gcattgggtt cgcacccggt ccgaatggag cacctgagcg acgaccgtcc
     6421 ggtgtattac cggttttctt accatatacc acgttagaag tgatagtaag cacagactga
     6481 gtcggcgttg cattgcggta tgttttgagt ttttgaattt tcttcataaa acgttcaact
     6541 aaatcaactg caatgtcgtc cacacggtta tcgttgttac cgaattgcgg atattcaccc
     6601 tcaatttcaa agtcggttgc tacgtttttc gctacaccaa ccacttcgcc agctttgttt
     6661 ttgatttcaa tatcggtacg gattggtttt actttcgcat atttaatggc tgaaagtgag
     6721 tctgccgcta ctgaaagccc tgcgatacca cacgccattg tgcggaacac atcacggtcg
     6781 tgaagagcca ttaatgccgc ttcgtatgca tatttatcgt gcataaagtg gataatgttc
     6841 agtgctgtca catattgggt tgcaagccaa tccataaagc tgtctaagcg ggtcattaca
     6901 tcatcgtaat ctaagtattc acttgtaatt gcttcagttt taggccctac ttggtcgcct
     6961 gatttctcat caacaccgcc attgattgcg tataacaagg ttttcgctaa gtttgcacga
     7021 gcgccgaaga actgcatcat tttacccacg atcattggcg atacgcagca cgcaatcgca
     7081 tagtcatcgt tttggaaatc cggacgcatt aagtcatcgt tttcatattg aactgatgaa
     7141 gtatcaatag acactttcgc acagtagcgt ttaaatgctt ccggtaattg ttcagaccaa
     7201 agaatagtta agtttggctc cggtgacggt cccattgtgt aaagggtatg taaaatacgg
     7261 aagctgtttt tggttactaa tgtgcgaccg tctaaaccca taccggctaa ggtttcggtt
     7321 gcccacattg gatcgcctga gaataattga tcgtattctg gagtacgcaa gaaacgcacc
     7381 atacgcaatt tcattactaa gtggtcgatt aattcttggg cttcttgctc ggtaatttta
     7441 ccggctctta agtcacgttc gatataaata tctaagaaag aagacacacg accaaaagac
     7501 atcgccgcac cgttttgcga ttttaccgct gcaaggtaag cgaaataagt ccattgcacc
     7561 gcttcttgtg cattggttgc cggacctgaa atatcaaaac cgtagcttgc tgccatctct
     7621 ttcattttgc ctaaagcacg atgttgctcg gcaatttctt cacgcagttg aatcgtggct
     7681 tgaatatctt cgccggattc taaacgagct tgtaatgagg caaactggcg ttgtttgtct
     7741 ttcattaaga aatccgcacc gtaaagtgcc atacggcggt agtcaccgat aatacgacca
     7801 cgaccataag catccggtaa accggtaatt acgcccgatt tacggcaacg taaaatatcc
     7861 ggagtgtaaa catcgaatac cccttggtta tgagttttac gatattcagt aaagatttgt
     7921 tctacttcag gtttaagctc acggcgataa actttgcacg aaccttttac catattgata
     7981 ccgccaaacg gcataatggc acgttttaat ggggcatctg tttgcagacc gacgattttt
     8041 tctaacgatt tatcaatata acccggtgcg tgtgaggtaa tggttgatgg cgtgtcgcag
     8101 tcaatatcat acggctcgtg tgttttgttt tctactttga tcatttccat cacatctgcc
     8161 cacaatttgc tggttgcagg tgttacttca gctaggaaag actcatcacc ctcataaggt
     8221 gtgtagtttt tttggataaa atcacgtaca tttacttcag tttgccactc acctgcggca
     8281 aaaccttccc acgctttttg ttgagcgtct gttagttgag tcattttaag tcctctgtgt
     8341 tagtaagtta aaacgggaaa gcggtaattt tttgcaaaaa atttgcaaaa tttgaccgct
     8401 tgattctgaa atcttagtgc tttctaatgt ataagaacca ctgcattaag ccgatgaaaa
     8461 acacaccgcc gacaatatta cccagcgttg ccggaattag gttcttaaac acaaaatgat
     8521 atagatctaa atcggcaaat tgcgtttggt caacattgat tgccgtccaa aattcaggac
     8581 cggcaaagtg agaaatcgca attcccatcg gaatcataaa catatttgcc acacagtgtt
     8641 caaagccgga agccacaaac attgcaatcg gtaacatcat aataaaggct ttatcggtta
     8701 ggcttttacc tgcataagac atccacaccg caatgcacac cataatgtta cagaaaatgc
     8761 ctaaacagaa agcctcaaac cattggtggt gaattttgtg ctgtgcggta tttaaaataa
     8821 ccaaacccca ttgccctttg gctgccataa tctgaccact aaaccaaatc aacaatacaa
     8881 tggaaatcgc cccaacaaag ttaccgaaat acaccactac ccagttttta aacatctgta
     8941 accagttaat tctttggctg gctctggcta caatcgtaag tgttgatgag gtaaaaagtt
     9001 ctgccccaaa caccacacac ataatcacgc cgagtgaaaa taccaaacca ccaatcagtt
     9061 tagccatacc ccaaggcatt tggctcgcac ccacttgagt tgtggtataa aatacaaatg
     9121 ctattgcaat aaaaccgccc gcagtaatgg cagagagaaa ggaatataat tgattttttg
     9181 ttgctttata aaccgcacca tcttctgcga tttttgccat ttcagcagga gaaaacatca
     9241 gacaacctta acaatgagaa ttgaaaaacc gatatattat gtagaaatta tagacctctt
     9301 gagataatct tcaaataaaa atattacaca atcagaggta tttcgatgtc tttttttgat
     9361 atagaacaaa atccataaaa aacacaacat tcaagaaaat ttataactac attttaataa
     9421 caaaccaact acaattttat gacagaatat ctcacttcct ttttcagttt attcttttcc
     9481 gaacaaaatc aactctttac tatgtttctg agtggatttc taagcgctac cctcttaccc
     9541 ggaaattctg aaattatctt cactacctta gcaagccaac atctcatcac ttatggctct
     9601 ttatcctcat tttcactgtt caatttactc ttggttgcaa ccttaggtaa tagtttaggt
     9661 agcataacca cttatgcgat agggctatta ctccctcgcc cacagaatac taccaatcgt
     9721 tattcacaat gggcattagc caaaagtgaa aaatatggcg tgttagtctt gctttttagt
     9781 tggtcaccga ttgtaggcga tattttctgt ggcattgccg gctggctacg gtttagcctt
     9841 tggcaaagca ttctctttat tgtgattggg aaattgttac gttatctgtt tttgctggca
     9901 actctctatt cggtgttacc gcatatttta tagaaaacaa aagcggctgt tttgcaaaaa
     9961 attttacaaa aacaaccgct tgtgctttat aagtttctta acgcttcaat acgtttttct
    10021 aacggagggt ggctcataaa caactcttta ccacggctac cgttaatcat aaaggcagca
    10081 agagagcctt ccatttcttg cggttcgtga acacgttgca agcgttgtaa tgccgcaatc
    10141 attttctctt taccgactaa ttgagcagag cctgcatctg cacgaaattc acgttggcga
    10201 gagaaccaca ttgcaatcat tgttgctaac acaccaaaca ccatctgtaa cacaatatct
    10261 actacccaga acaccagcgt attggtgctt gaattgccat tttcgtcacg tgaacttgcc
    10321 gccattgtcg aaataatacg agctaagaaa atgacgaaag tatttaacac gccttgtaat
    10381 aaagtcattg taaccatatc gccattcgca atgtgcgcca cttcgtgtgc tactaccgct
    10441 tcagcttcgt ctttagtcat tgaattcagc aagccggtgc tgactgcaac taaagaatta
    10501 cttttcgttg ctcctgtagc gaatgcattt acatcagccg aatggtaaat cgcaatgtcc
    10561 ggcattggga tattcgcttg ctgagcctga cgttgtacag tgttgaataa ccattgctcc
    10621 gcttcgttac gaggctgtgt aatcacctct gccccaaccg aacgcaatgc cattgatttc
    10681 gacataaata gcgaaattaa agacccactg aaaccgaaga ctaacgaaag caccaaaata
    10741 ccggcagtgc tttgcccttg aatgccggtc actttaaaaa taaggtttaa tacgatccct
    10801 aaaacaaagg taatcgctaa gttagttaat aaaaatagaa tgacacgttt tgccataatg
    10861 ttttcaatct ccaaaaatat agatgcaatg attgcacgaa taagataatg actttagcct
    10921 taatttcaag tcattattta caattattcc cacaaattta actgtttatt cacttttttc
    10981 tcgggaaagt gaacacttag accgattaat cgcacctttc gttcctttct tcgggtaaaa
    11041 atttgctgta gcaactcgcc aaatcgctca tacgcaaagc catcggtggt tcgttcaagc
    11101 gtggtttggc taaaatcatc aaacttgagt ttaatgccta actttttaaa ctcagttaat
    11161 ggcgtatcgc cccagtttcg ttgcaaccga aaaaccagtt tgtcgaataa atctgccaca
    11221 atcttttccg cttgctcaag ggttgaaata tcgtgcaaca gcgtattttc caccgccagc
    11281 gattttcttt cacgataaga ctctaccgct cgttcatcaa taccgtggct aaaatcccaa
    11341 agccgttgcc cgaatttgcc aaacgctcgg taaataaccg ctttttctgc ttgctgaata
    11401 tcaccacagg tttcaaagcc aagctgtttt aatttttcat tggttacttt ccccacaccc
    11461 ggaatttttg caagcggtag atttttcaca aaattttgca catcatcagg cgtaatcaca
    11521 cattgtccgt taggtttgtt ttgatcggag gcaatttttg ctaaaaattt aagcggagca
    11581 actcctgccg aggcagttaa atgcaattca ttgaaaatat cattgcggat tgcttgagca
    11641 atccaagtgg cggagccaaa atagcgttcg cattcggtta catctaaata ggcttcatca
    11701 agcgacaagg cttcaatcac atccgtatag cgatgaaaaa tttcgtgaat ttgagcggaa
    11761 accaatttat acaacgccat attcaccggc aataaaatta aattcgggca tttcttcaac
    11821 gcagttgccg ttggcattgc actgtgtaag ccgaattttc gagcctcgta attacaggtt
    11881 gtcagcacac ctcgttgatt agcattgccg cccaccgcca ccggcttacc gaccaacgcc
    11941 gggttttccc gcatttcgac cgctgcataa aaacaatcca tatcaatatg gataattttt
    12001 cgcttatgtt tagcttgaat cgacatttgc aatattttcc ccaaaaacga ccgcttgcaa
    12061 cacaaataac tgtatataaa aacagtttta ttttatgccc ttattgttag aatttcaagt
    12121 ttaaaaatag cgataaaaag gataaaaaat gctctacggt ttagccattg tgctgattcc
    12181 actttttctc ggttacttaa taaccctcaa aaaccaccgc tatatggcaa tagtaaacag
    12241 agtggtcagc ctctgccttt acttgatttt attagtgatg gggatttctc tcggacaaat
    12301 tgataacatt ctcaccgaac tgccacagat tggcggtacg gcgtttagtt tagtggtaat
    12361 tttactcctt tcaaacatta tcggcttggt gatttacgac aaattacaac cgatgaaaag
    12421 agacaaagtc aatcaagatc aacttccctc ccgcctgcat ttgttgattg attcctttaa
    12481 attaatcggc attaccttat taggcgggat catcggctat ttcaccaaag gcgtggtgga
    12541 tttccctctg cacgccagca cctatgtgtt agaagtgatg attttcgggg tggggattca
    12601 actgcgaaac agcggtattc ccctgcgtga agtgttcttt aacaaacggg ggatttatac
    12661 ctcgattgta atggtggcaa gttccctgat tggtggcgtg atttcggcat tcaccttaga
    12721 tttatccctt gctaaaggct taacctttgc ctctgcattc ggttggtatt ccctttcaag
    12781 cgtattggta aacgatgctt ggggcccgat ttacggcagt attgcctttt ttaacgacat
    12841 ctcgcgtgaa attttatgcc tgtttttagt accactgttt atgcgtcaat ttccgtccac
    12901 cgcagtcggc attggcggag cgacttcatt agattgtatg ctccctatta ttcaaaaatc
    12961 gggcggtatt caaattgtgc cgctggcaat cagcttcggt tttattgtta atttagccgc
    13021 tccattgtta ttagccgttt ttattgggct ggaaggataa atcacaagcg gtgattttta
    13081 tcccactttt tgcaaaaaat ggaataaaaa tcaccgcttg tttgctttta tttatccatc
    13141 ttcgctgaat tttccgctat aatccttaag ttttccccga aacttgggat atttattttc
    13201 aaaaggataa ttttatgatg cgttctcact actgcggtgc attaaaccgc tcacaccttg
    13261 gacaaacagt taccttaagc ggttgggttc atcgtgttcg taaccttggt cgttttattt
    13321 ttatgcaaat tcgtgatcgt gaaggcattg tgcaggtgtt tttcgatgag aaagatgaag
    13381 cacttttcaa gcaagcatcg gccttacgtt ctgaggcgtg cgtgcaaatt caaggtgaag
    13441 tgattgcccg tgatgaatcg caaatcaata aagagatggc aaccggtgaa attgaagtgt
    13501 tagtaaaaaa tttagtggtg tataacaacg ctgaagtatt gccgttagac ttcaatcaaa
    13561 acaataccga agaacagcgt ttaaaatacc gctatttgga tttacgccgc cctgaaatgg
    13621 cagaaaagct caaaacccgt gctaaaatca ccagttttgt ccgccgtttt atggacgata
    13681 acggtttctt agacattgaa accccgatgc tgaccaaagc tactcctgaa ggtgcgagag
    13741 attacctcgt gccaagccgt gtgcataaag gcaaattcta tgctctgcca caatcacctc
    13801 agctatttaa acagttgcta atgatgtcgg gcttcgaccg ttattaccaa atcgtgaaat
    13861 gtttccgtga tgaagatttg cgtgccgacc gccagccgga atttacccaa atagacgtgg
    13921 aaaccagctt tatgactgcc gaagaagtgc gtgcattaat ggaagcgatg atccacggct
    13981 tatggaaaaa gaccttaggc gttgatctcg gtaaattccc aatgatgacg tggaatgaag
    14041 caatgacccg tttcggttca gacaaaccgg atttgcgtaa cccactggaa atggttgatg
    14101 tggcagatat tttaaaatcg gttgatttca aagtatttag cggtccggcg aatgatccga
    14161 aagggcgtgt agtggcactt cgtgtgccaa acggtgcagc tctaacccgt aaaaatattg
    14221 atgactacac ccaatttgtc ggcatttatg gggcaaaagg cttggcttgg ttaaaagtga
    14281 atgatatgaa cacaggttta gaaggcattc aaagcccggt tgcaaaattc ttaaatgcag
    14341 aagtgctaaa agccttagtt aaacgcttaa acttgcaaaa agacgacatt gtattcttcg
    14401 gtgcggataa ctggcacgtt gcgactaacg ccatcggtgc gttacgctta aaagtgggga
    14461 acgatttagg cttaaccgat accacagcgt ggaaaccgtt atgggtgatt gatttcccaa
    14521 tgtttgaacg tgatgatgaa ggcaacttat cggcaatgca ccacccgttc acttcaccga
    14581 aagaattatc gccggaagaa ttagtgcaag atccggaaaa tgcggtggca aacgcttacg
    14641 atatggtaat taacggctac gaagtgggcg gtggctcggt acgtattttc agccagcaga
    14701 tacaacaaac cgtgttcagc attttaggca ttaacgaaga agagcaaaaa gagaaattcg
    14761 gtttcttatt agatgcgtta aaattcggta ctccgccaca cgcaggctta gccttcggtt
    14821 tagaccgctt aacgatgttg attacaggaa ctgataacat tcgtgatgtc atcgctttcc
    14881 cgaaaaccac cgctgcagcg tgtttaatga cagaagcacc aagttatgcg aatccgaaag
    14941 cgttggaaga gttagcaatc cgtacaattc cacaagagta atcggtaggg gcgaaatatt
    15001 tttcgccctt tttatttaac aagcggtcga aaaagtgaaa aactttgcaa aagtaataat
    15061 cgcaaaatta ttctctaaat aacataataa agactctttt ctcttctcta tgttactact
    15121 aaatatcccc tattatttta attattacct tatttgggta ttgagcagat ttatgccgaa
    15181 caagataata gcgctgaata attgtgtggt atttaaatga atatttaatc gatttaaata
    15241 atctttttaa tagcgctcaa atctgatcta cttacatatt tatacaggtt tcaaataata
    15301 atgaagcata ctttcaagct ctctcttcta gcaacatcaa ttgctatttc tctttcacca
    15361 acattactgg catctattgt acgtggtgat gtcgattatc aatattttcg tgatttagca
    15421 gaaaataaag gccaattttt tgttgaggca accaatattc cagttattga taaaacgggc
    15481 aaaaacatcg gtactttttt acaggttaca ccaactaagc aggttgaagt ggaatcaaat
    15541 atttcaccta agccgaatgt aagcctatct gaatgctttg ataatgaaag tttacccggt
    15601 tgttatgaat ttctctatgg tggaggtgat gaagactcta atgatctacc tgtttttgaa
    15661 acagtaacag gtgagactat gtctattcca atgattgact tctcttccat tactcgtcaa
    15721 acagggattg caacattagt taatccacaa tacgttatta gtgtaaacca caaccaaggc
    15781 tatcgggaca ttcaatttgg tgattcatct agcgaaaaag ccgacgacca tcattacaat
    15841 tatagtgtgg tgcgccgtaa taactatatg cctgatccaa ataaagaaag aacagatctc
    15901 gggaaaggca tagaaaaacg tgaacgtaat gacgaaggag aaaaactgat tttagatggt
    15961 tcaggtaacc caacgccccg ctgggactac cacgcaccta ggttatcgaa attagtaact
    16021 gaagtcgctc cagctaatga gattgaacgc actaccgaaa atgtacaaga tttttatagt
    16081 gtatttagcg acccttttat tttccccatg tttattcgtg ccggttctgg tagacaagca
    16141 gtgattaaca acgaaagaga tcgcttaaac aacgggcgta ttgaagtcgg taacggtcct
    16201 tttttgacag gaggtagcgt tctgcctgtt actaatggcg atccaagcgt tccaggcagc
    16261 gattttaaca gccgtatttt agtagcaaaa actgaaaata atactataaa cgatgtattt
    16321 aaagaccacg gctacggtcc cttaacaact ctcggtttac ctggcgatag tggctccgct
    16381 ctttttggtt atgatgttcg taccaaaaaa tgggttgtgt taggtgtata tagtgactat
    16441 ttctcagaga ataatacgcc tgggggagat gtttataaat cttactggaa ctatcaccac
    16501 ccacattatg tacgtgcttt agaaaaagaa aataatgcag gcgctattaa tgcaaatggt
    16561 gctagactca cttggacacc ttctggcaat accagctcaa tcgtaggagg gaatgctcct
    16621 cttacagtta atttagcaga tacttcatta ccaacacttc aaggtcataa tggtaataca
    16681 ggcgataacc cttggaatcc tcaactccaa cacggtaaaa cattccatat tttgggtgaa
    16741 aacaatacgc taagtctcac agagaatatc aaccaaggtg caggagcaat ccattttcat
    16801 ggtaatacca ctgtggaagg tatgaaagca ggcattactt ggttaggagc cggtgttgat
    16861 attgataaag ataaaaatgt gatctggaaa atcagtaacc ctgctggtga cagattatca
    16921 aaaatcggac aagggacact aactatcaac ggcaaaggag aaaacaaagg ctccgttagc
    16981 gttggtgacg gcactgttat attaaatcaa caagcggatg aaaataacaa aaaatctgca
    17041 ttttcagagc taggtattgt gagtggcaga cctaccgtaa tcctcaattc atcagatcaa
    17101 atggatccta acaatatcta ttttggttat cgtggtgggc gcttagatgt caacggcaat
    17161 gatctcacgt tccgccgtat tcagaatagc gatgaaggag cgatggttgt caatcataat
    17221 acagcccaaa cagcaaacat tacactaacc ggcatagtta gtccaacaat tgaccaagtg
    17281 aaagttcaag caattactag tccagatcag gtttctcgtc atttggacaa agatattttc
    17341 acatatcaac gttttccaca cttgccaact aattttatcc gtttgaaaaa acctttaagc
    17401 gttgcagaga tcacagctat ttttaatgcg cgtaaagttt tcatcgattt agactttgct
    17461 actggtctca ttcgtgaaaa cgaatacttt gaagtactca aggtaacaga tgaaagtgct
    17521 gcaaagcaac aaatacttgc tgaaaaaatc aaagcagcag aaggcaccgt ccaaggtttt
    17581 aacggttatt ttggtgaaac tgatcctagc aaaaccaatg gtcgattaaa cattacaatg
    17641 aacagtaatg aagtagcaaa cggcaaattg cttatcactg ggggaacgaa cctcaacggt
    17701 acgctttctg cagaaggtac aagcgaaatc attttatcgg gccgtccaac acctcatgcc
    17761 tatgataaag tagcgaataa agaagtcctg attgaaggcg actggatcaa ccgatcgttc
    17821 aacgcaacaa tctttgcagc taaagacaat ggcaagcttg aaatcagccg taatgttgcc
    17881 aatattaacg gtaattttaa tttaacagat aatgctaccg ctcaaattgg ttttacccaa
    17941 ggtacctcac aagcatgtat tcgctctgac cgcacaggcg tagcaacctg taatattaac
    18001 gctactttat cagagactga tttaaacagc tgggagagaa ccaaagtggc tggcaatgtc
    18061 tctttagctg acaattcaac attttcgtta ggcagtaaag cagacttaac tggctcaatt
    18121 acagctcagg agtccactaa ggttcaactt aatgatggaa gtattgctaa tttaaccggc
    18181 ttgagtacaa caggaatatt taatggcgcc aatggttcaa ccgttaatct ttctggggta
    18241 tggacaacct taaccaacac tgttgtagat gtcttgaatg tcgcaaatgg tagccaaatc
    18301 catttaaaca ctccaactgc aacaaaacag aatacgctta ccgctaatac cctcacaggg
    18361 aacggcatat ttaaatttgt cgctgatctg acgaaaacag cgagcgatat agtcacaatt
    18421 aaagacaccg caagcggtca attttcgata gaaattagca caaatggtag cgcccattca
    18481 gcccaaaaga ttaaattatt tgaaacaaca aatgaagaag acttttctct taatttagca
    18541 aatgaagtgc gctcaggcga atatcgctac catttactca aagaagggaa tgtgtattac
    18601 ctcaatccag agaaagagga agaacctaaa attactcaaa aagggccaag tgaaaccgct
    18661 gacccattac ctgaatacac cggggatatt gagtattctg aaaaagggcc gggtgaaact
    18721 gctgatccgt tacctgaata cacaggagac attgagcatt cagaaaaagg atcgggtgaa
    18781 accgctgagc cattacctaa atacaatgga aatgcacatt tgatcgcatc cgagttaact
    18841 gcgcaaacta atgctgtatt aggtgtaact acagtattag atcatgtaat tcattcggaa
    18901 gggacccaaa attggaaagt atggtctaaa acagattatc aaacgacaga gcatcgctct
    18961 gccggatatg gatttaaaca agatgcgaac gttatccatc taggattaga gaaagcctta
    19021 gataatcagg tcacacttgg tatgatatta tctcaatcaa aagcgagaaa taattttgac
    19081 cattattata gcggtaaagg ccgcttaaca atgctatcaa tgtatgcgaa gaaaacatgg
    19141 caaaatggtg tttttgttgc gatagatacc ggttttggga aagcaagcaa tcgcttaact
    19201 tatcaagcaa atacagtaaa attagatcgt tcagtatttg taacagggct tagtatcggt
    19261 aaagcatggg aatctgcaaa cgtgaatata atcccatcat ttagcgcccg ttatcatcat
    19321 ttatcttcag caggtaatca acttgtagat gcaaaaatcg aaacaaacgc tgttgatctt
    19381 ctcgctcttc aagctggtct gtcaattaat aaaacgcttg aactaaatgg cctgcaaata
    19441 aaaccggaaa taggtagcta ttttgttgat gcaagccatg ggaaattaag aacacgtttc
    19501 aataatttac aaatagagca gcaaatgggg cgttatttta aacaagaagc aggtatatcc
    19561 gctaattatc gcaatataaa cgcaggaatt caggcaggtt tcttaacggg gaatacgcta
    19621 aataaacagc gttatatctc gttcaaagtt acatatgaat ggtaaatatt gagattaagg
    19681 gctatccatt actaaatggc atagcccttt atttactcct caacaatgta aattacccat
    19741 caaaacaaac tctgctgccc aagcaaattc tccggcacag gtttgatttg aaatcctttt
    19801 tccgccaaaa agccttttag ggtttgaata ttataaaagg cgtggctttt agtggtgttt
    19861 tcaaagtaga gatagagcct gtcaaattcc gttctgcggt taaaaagcaa ttctgccaag
    19921 ccttttaatt cctcgtctga atagcggtaa tcgtggcatt ctgccgcact ctgccctttc
    19981 caccaattcg ggttacgacc atgtaagcgt aaataagcag tacgttggtt ggcaaaaaag
    20041 tgaaatgccg gtaagccgat attttgtggg taatccacat tacaccaaat cagattagag
    20101 cttttcgcaa aggtatcaaa caccgccgga atatgccagc ttgggtggcg aaattcaatc
    20161 gctaacggat aatccgcaaa ccattggcac aactcggcaa ggtaacggcg gttaagtggc
    20221 gtacgttcaa attgagttgg gaactgaaca aataaatttg ccaataaccc ttcagcggtg
    20281 aacggagcta acgcattaag aaataattgt gcttgatcta aagtcgccgt gcgttgatgg
    20341 ctgaaatctt gatgcagttt caccgaaaaa ttcagccgac cttccgcttt ctgcaccatt
    20401 ccttcaaagg ctttctgccc gatgggggcg tggaatgtgc tgttaatttc cagcgtgtcg
    20461 taatgttggc tatagacaaa gagaaaatcc tcttttgcag tgccgaatgg gtaaagcgtg
    20521 ccgattaaat ctgtgtcggc atagccgccg gtgccaatat aaatatgagg gagcattgtg
    20581 tttattcttt caattttttg caaattttaa tggtttttta accgcttgca aactgagaat
    20641 aaaagagtaa gatttggcta tcttttctta tttcatcatc attatgtgga tttggtttac
    20701 tctgctggca gccgtggctc aagccggtcg caatgccttt caaaagcaat taagcgtcaa
    20761 tgtgcctgta ttgggggtaa cgctcgcccg ctttttctat gctgtgccgt tggcaagcgg
    20821 ttatctctat tttttatacc aatatgacga taacctcaac attccccatt ttccaccgct
    20881 gttttttgta tatgctatcg gggctgggtt ggctcaaatt ctggcaactt cgctaatggt
    20941 gcaacttttt cacttaaaaa attatgcaat aggtgtcggg ctggcgaaaa gcgaggcagt
    21001 atgggcggct ttactgggcg tgttattttt tggtgtaacc atcagtggca ttggctggct
    21061 tggcgtggta ctaggtggag tggcgatttt cttaatgacc ggcagcggta atctacgcca
    21121 actttcgtgg aaaacactct ttctcggcat agccagcggt ttatgtttcg ccctcacatc
    21181 acttttggtg cgagaggcaa gcctgcaact caacagccac tatttgcttt cagcggcgtg
    21241 ggtacttttt agcgtgatta gctttgaggc agtgatattg gttatatacc tagctcttct
    21301 ccaaaaagag acactgatta aattctttcg ttttccaaaa ttaggtatgt tgaccagcct
    21361 gttttcattt ctcggctcat tcggttggtt caatgcaatg agcctgaacc acgttgcctt
    21421 tgtaaaaacg cttggacaag tggaaatttt ctttattctc ggtatttcct attttgtgtt
    21481 taaagaacgg cttaaaattc aagattttat agggctgatt ttagtagtga ttgccgcaat
    21541 cttggtggtg ctgggctaga tcggattttt acgtttttta tctagctttg tagggtgggc
    21601 ataagcccac gcaaaaccaa taaatcattt atccgtgggc ttacgcccac cctacgatac
    21661 ctaaaaaaat taaatttcac atcttagtaa taaaatgaac tataaaaatc ctcatagtat
    21721 ccttgtggtg atttatgcta aaaataccca acgagtattg atgctacaac gcaaggacga
    21781 tcctgatttt tggcaatcgg tgaccggttc gatcaatatt ggagaaacac cgctggaagc
    21841 agcagaacgg gaagtgagcg aagaaaccgg tttgcaaact tttgagcaaa aacaaccgct
    21901 tgttgattgc caaaagcaga tagaatttga aattttcccg cattttcggt ataaatacgc
    21961 acctaatatc acacattgtg tcgaacattg gtttttgctg ccacttgata gtgagcaaga
    22021 gcctatttta accgaacatt tggcatatcg ttgggtttca gtggaagatg cggttcgact
    22081 gactaaatct cccaacaatg cccaagcaat acaagaatat ttaacatcaa aataaggaaa
    22141 caacagaatg gcaggccata gtaagtgggc aaatattaaa caccgtaaag cggcacaaga
    22201 tgcacaacgc ggtaaaattt ttactaaatt aattcgtgaa ttggtgactg ccgccaaact
    22261 cggcggtggt gatacctctt ccaaccctcg tttgcgtgcg gcggtggata aagcgttatc
    22321 cagcaatatg acccgtgata ccatcaaccg tgcaatcgag cgtggtgtag gcggtggcga
    22381 tgataccaat atggaaacca aaatctacga aggttacggc ccgggtggta cagcagtgat
    22441 ggtggaatgt ttaagtgata acgctaaccg tacgatttcc caagttcgtc caagtttcac
    22501 aaaatgtggc ggtaacctag gtactgaggg ttcggtaggt tatttattta gcaaaaaagg
    22561 cttaatttta gtggcaaatg ccgatgaaga tgccttaact gaagctgcta ttgaggccgg
    22621 tgcggacgat attcaaccac aagaagatgg tagctttgaa atttataccg cttgggaaga
    22681 tttaggctca gtgaaagacg gcattgaggc tgcaggcttt aaaattgaga atgcagaagt
    22741 aacaatgatt ccatcaacta ccgttgaact tgacgcagaa actgcaccaa aacttcttga
    22801 tttaatcaac cgccttgaag attgtgatga tgtacaaaac gtttatcaca atggtgaaat
    22861 cagtgacgaa gtcgctgcat tactgtaata aaaaaatcac gcaaaataag cataatttag
    22921 gttatgctta ttttttatga acttttttcc tatattactg actaacctaa tgtagtttat
    22981 atgctactac tttactataa cattttaagg agagtctatg aaattagtga aatttgtccc
    23041 tgccctagca gcaactttag tattagccgc ttgctctaat gcaaacacac aatctgctcc
    23101 tcagcaagct caggacgctg tgactaaagc ggctgaacaa gcaacacagc aagtgaatga
    23161 aattgcaggt aatgcacctc gtgcaagtgg tgcagtaaaa gtagaaaaag caactgatgg
    23221 tgcaaaatca attgtatatc gttgccaaag tggtaaacgt gtaactgcga attatgtctt
    23281 ccaaggagaa gaggcaaaag cagtaaatct attagtccaa agcggcggta aaacacaaaa
    23341 gatcccaaca ttaactcgtg atgcctcaaa ccaagattct acttcattca aaacggataa
    23401 atattcttgg gatttagaca caggctttac cttatcatct aatggccagt caggtatgct
    23461 aaccaaatat ggtgctaaaa cagataccat cgttgctaaa ttatgtgatg tagataaagc
    23521 attaacctca aaattaaata aataatcttt cttgatttta ctactcataa gcgagaagat
    23581 aatatcttct cgcttatttt attgcacaaa gatggctatt attttaggaa ttgaccccgg
    23641 ctcaagggta acaggttacg gtgtgattcg ccaaaacggg cgacagctgg aatatttagg
    23701 aagtggggct attcgaacca cggctgaaga tctgcctacc cgcttaaaac ggatttatgc
    23761 aggcgtgagt gaaatcatca ctcaatttca accaaatatg ttcgccatag agcaggtatt
    23821 tatggcaaaa aaccctgatt ctgccttaaa gctcgggcag gctcgaggaa cagcgattgt
    23881 agcagcggtt aatcacgatt tacctgtgtt tgaatatgcc gcccgattag tcaaacaaac
    23941 cgttacggga attggttctg ctgataaagt acaagtgcaa gatatggtaa cccgtatgct
    24001 taaactctcc gccaaaccac aagccgatgc ggctgatgca ttagccattg cgattaccca
    24061 cgctcattca atccaacatt cactgattgt tgctaagcaa agccagcaga atgtgagtag
    24121 tgagaaagag caaattttag cactaatgaa aacccgttat agccggggaa ggtttaggtt
    24181 aaaaggctaa ctcaatataa aatgaccgct tggaactaat gtttcaagcg gtcatttttt
    24241 gagaaaattt tacaattact cgccttcaaa aggagctgag aaacgttcaa ttctcgcccc
    24301 aatctgacgt aatttttctt cgatgtgttc atagccacgg tctatgtggt aaattctatc
    24361 cacaatcgtt tcacccgttg caatacagcc tgccaacact aagctgatgg aagcacgcaa
    24421 gtcagttgcc attacttctg ctgattttaa ctgctctaca ccatagcaaa ttgcagtatt
    24481 accttcaatt tccgctttgg cacccatacg aatcagctca ggaatatgca taaaacggtt
    24541 ttcaaaaatc gtttctgtaa tacggcttgt gccttctgca acggtattta ataaggtaaa
    24601 ttgagcttgc atatcagttg ggaaacctgg gtgtggcata gtgcgaatgt tcactgcttt
    24661 cgggcgacga cctagagaat caagcgtgat agtattttcc gtcacatcaa cctgcattcc
    24721 agcttcacgt aatttttcga tcactgcatc aagagtgtct gctttggtgt tacggcaagt
    24781 aattcgacca ccggaaatag ccgctgccac taaaaatgta ccggtttcaa tacgatccgg
    24841 cactacgctg tgttcgcaac cgcctaaatg ctcaacccct tcaatggtaa tcatatcggt
    24901 acctgcacca gaaattttag ctcccatcgc atttaagaaa tcggcagtat ctacaatttc
    24961 aggctcacga gcagcatttt caataacagt agtacctttt gctagagtac ctgccatcat
    25021 caccgataaa gttgctccta cgctcacttt atccatatag attcttgcac cgtttaaacg
    25081 accgtttgaa gttgctttga catagccttc atcaagctcg attttcgccc ccattttttc
    25141 aagaccggaa atgtgcatat ctaccggtct tgccccgata gtacaaccgc ccggtaaaga
    25201 aacttgccca agttggaacc gggcaactaa tggagctaac gcccaaattg aagcacgcat
    25261 tgttttcact aattcgtaag gtgcaacgta attattgatc ttactcgcat caatatgtac
    25321 cacgccttta tcgctacctt tttcaaccgt tacccctaat tggcgtaaga ttttaaaagt
    25381 ggtgtccaca tcttttaaat caggcacatt ttttaacgta actgtttttt cagccaaaat
    25441 agcggcaaat aaaataggga gtgcggcatt tttcgcacct gaaatatcga cagtaccatt
    25501 taaagaaaat ggaccataca cacgaaattt ttccatttgg gagatcctaa aaaataataa
    25561 tttgtagggg cgaaaaattt ttcgcccaat tttccaacgt ttacaaaaga gtttgggtga
    25621 atagtgattc gcccctacat ttcatctatc caaccatatt tagcaaacgc tcagttttcc
    25681 atttttccac gctgaatact ttaatggtta aagcgtgaat cgcattagta gtgaaatact
    25741 cagctaaagg ggcataaaca gcttgctgtt gttttacttt tgaaagagaa gcaatgctgt
    25801 cacttactac aataacgcca aagtgggcat tctcgccttg agcgtggact tctgttgcat
    25861 cagataatgc ttgttttaaa atttcttcaa tttgtgatgg attcattctg acttcctaaa
    25921 atatgattgg taactcactc aaataataaa ttgctcaaac caaccgtcta aatcgtataa
    25981 tgcagccaaa gttctgacag aatctggcgt attaatcaaa ctgtttggta tgattttatg
    26041 gtaatgattc agtaattcag caagtaaggt aaaaccggca gaatcaatcc gagtgatttc
    26101 ttttaaatcc caatataggc tttgtttccc tgttggagat aaaaaagaag cacgttgctt
    26161 ccataaaggg agcaacgtgt tacgagttaa ttcgcctgat agtttcacaa aaagactttc
    26221 gttattttgc tgaatgtccc attgtaatgt tttttgaggc ataactaaac tacttatttt
    26281 aaagtgatag gctgttttgc agattgtgcc acttgtgcaa ttaaggcatc aatccctttt
    26341 tgacgaatca cacccgccca ttcgttttgc ttggttgcaa ccatacttac tccttcagcg
    26401 gccatatcgt atgcttgcca ttcacctgtt ttgctgtttt tacgccattt aaaatctaat
    26461 ttgatcggct gtgcagcacc tttacctgac acgtttacac gaatgcttac gatagattta
    26521 ccatccaccg atttcgggct ttcaatttgc acactttgat cttgatactg ggttaacacc
    26581 tgagcataag actgctcaac aaattgacca aaagcattaa agaatgcctc tttttgtgca
    26641 tcagtcgcag ccgataagtt tttccctaac actaattggc ctgcatattt cacgtgaacg
    26701 tgtggcatta aatcgttacg cacaatggta cgcaaatatt cagggtttga tttaattttc
    26761 gcttgatttg ctttaatatc gccaaataat ttatctgcgg tttgttgcat taatacataa
    26821 gggctagttt cagcaaatgc ggtggttgaa aataatgcag aaactgccac taagcctgtt
    26881 acgataattt ttttaatgtt ttttaacatt attgatgctc tccaaaactc taaattagag
    26941 gttgttgtac ttaattactc tgcttttggt tcagcagaat cacttgcttt ttcatcttca
    27001 gttttatctg actttttatc accatataag aactgaccga ttaaatcttc taacaccatt
    27061 gcagaattgg tatctacaaa agtatcacct tctttcatca ttgcagtttc accttcgatt
    27121 acgaagccaa catttaacgc aacgtattgc tcgcctaata agcctgaggt tttaattgag
    27181 agcgagctgg tatcgggaat ttgattaaaa ctttcattta ccgctaatgc cactttcggg
    27241 gtgtaggttt tgttatcaag tgaaatatca gccactcggc caactaccac accgccaact
    27301 ttaataggcg cacgaacctt tagtccacca atattatcaa aagttgcata cagggtgtaa
    27361 gttttctcat ttgagaagcc ctgcacattt gctactctta agcctaaaaa gacaagagct
    27421 gcaagcccaa gtagtacaaa taagcctacc caaaattcat atttaattga ttgacgcatt
    27481 gtctgttcct ttcaaaaaat caaccgccga acattatcgc agttaaaata aaatctaatc
    27541 ctaaaatcac cagtgaggca tttaccaccg ttcttgtggt cgcttggctg attccttctg
    27601 aagtcggtac gcaatcgtag ccgttaaata aggcaatcca gaccaccgca aaggcaaaaa
    27661 tcacactttt aataaagccg ttaattaaat cgctggtatt taccgagttt tgcattaccg
    27721 accaaaaact gccaccatca acgcctttcc aatctacccc gactaatgag ccgccccaaa
    27781 ttccgatagc ggtaaaaata gcagctaaca ccggcattga aatcacgcct gcccaaaagc
    27841 gaggagcgat gatacgtcta agcggatcaa ccgccatcat ttcaagactg gaaagttgct
    27901 ctgtggcttt catcagcccg atttctgcgg tcaatgccga accggctcgc cctgcaaata
    27961 ataatgcagt aactacagga ccaagttctc gtaaaagcga gagtgaaacc aaagttccca
    28021 agctactttc ggcggcaaaa tcgaccaata ccacatagcc ttgtaagcct aacaccattc
    28081 cgataaataa gcccgacagc ataataatta agagcgattg cactcctaac acataaagct
    28141 gtttaatcag taacggggta tgttttctaa attcaggttt accgattaat gctccccata
    28201 acataaaagc ggaacgccct aatgtacgga taaaattaat caccaccgcc ccgatagagc
    28261 taataaaatt aaccattaaa tagctcctcc gtataatctt ttgctggata atggaaccgc
    28321 accggaccat cagctttacc ggctaagaat tgtaccactt gcggatcttc gcttgcctgt
    28381 aaaatttccg gtgtaccttc agcaatcact cgtttatctg ccacaatata agcataatcg
    28441 gcaatactta atacttcttt cacatcgtga gacaccacaa tggaggtcaa attcaatgcc
    28501 tgatttaact ctttaatcag ctcgacaatc acacccatac taatcggatc ttgcccggta
    28561 aacggctcat catacataat cagatccgga tctaacgcaa tcgctcgagc aagggcggca
    28621 cgtcttgcca taccgccgga aagttcggac ggcattaaat ttgccgcacc tcgcaaccca
    28681 accgcctcga gcttcaataa caccaatttg cgaattagct cttcgggtaa acgggtacgc
    28741 tcccgaatcg ggaaagccac attatcgaag gtagaaatat cggtaaataa cgcccccgat
    28801 tgaaacaaca tccccattcg ttggcgaatt tcatacaact ctttgttatt ggctttgcaa
    28861 atatctctgc catcaaataa aatttcgccc gattcaggta aaatctgccc accgattagc
    28921 ctcaacaggg tggttttacc aatcccagaa gaccccataa tggcagtcac tttacctttc
    28981 tgcacttgca gattcaggtt atcgtaaatc actcgctccc ctcgcttgaa ggtcaagttt
    29041 tttacttcaa ccaaattttc cgtttttgtc atcaaatagg actcaaatta ataaaagtga
    29101 tatttatggt ctatcaaatt tgccagaatg tcaaaaaact tttaataatc tgacaaaaat
    29161 ctgcctttac aagcggtcag atttgctaaa ttttttgcaa atcggctgaa ctgaaaaaga
    29221 aaggtcttgt cttagccaat acgagcgttt tcactcgtag attataaaaa cataggatat
    29281 gaggaacatt cacaatatga acaaaacaat gaaaaaatca tttttaactg cattcatttt
    29341 aggctcaacc attgccgcaa tgccggcgta tgcagaagca acattaccca cagccgtaaa
    29401 tgggcaagct gtgccaagcc ttgcaccaat gctggaaaaa gttcgcccgg cggtggtgag
    29461 tattgcagta gaaggtaaaa ccaaaggcga tagccgccgc agtcgtgaaa ttccggaaga
    29521 atttgaattt ttcttcggtc ctcacgccga tttattcggc aaccgctcat cagctccacg
    29581 caatttccgt ggcgttggat caggtgcagt catcaatgcc gaaaaaggtt atgtgattac
    29641 caataaccac gtgatcgaca atgccgataa aattaccgta aaacttgaag acggacgtga
    29701 atttaaagct aaattagttg gtgctgatcc cctttcagat gtggcgttaa ttcaagttga
    29761 agatccaaaa aacttaactg aaattaaatt cgccgattcc gataaattac aagtgggcga
    29821 ttttacagtt gcaatcggta acccgtttgg cttaggacaa actgttactt caggcatcat
    29881 ctcggcactt ggtcgttcaa ccggtcaatc cgatgaaggc tatgaaaact atattcaaac
    29941 cgatgcggca gttaaccaag gtaactctgg cggcccgtta attaacttaa acggcgaatt
    30001 aatcggaatt aacaccgcta ttatttctcc aagtggtggc aatgccggta tcgcctttgc
    30061 gattccaagt aatatggcaa acagcttggt gactcaaatt attgagtttg gtgaagtaaa
    30121 acgtggaatg ttaggcatta aaggcggtga attgaatgct gaccttgcta aagagttcaa
    30181 tatttccacc caacaagggg catttgtaag cgaagtctta ccggattctg ctgctgctaa
    30241 agccggcttt aaagcaggtg atgtgattac tgaaatcaac ggtcaaaaaa tccgtagttt
    30301 cagcgaatta cgagcaaaag tagctacttc aggtgtaggt aaagagattg aacttactta
    30361 cctgcgtgac ggcaaagaag ccaaagcaaa agtgacctta caatcggatt ctgaagccaa
    30421 agttactgct tcaaacctca ttccggcatt aaaaggggca gattttaaca actacaatgc
    30481 caaaggcatt aaaggggttg aaatttctaa cgtagaaaaa ggctcgattg ctgaaatgcg
    30541 aagcctcaaa aaaggcgata ttatcatcgg cgtgaaccgc cactcggtag aaaacattgc
    30601 cgatttacgc aaaatattag aaaccaagcc atctgtggtt gcactcaata ttgtgcgtga
    30661 cggtgcaaat ttctatgtga ttttgcaata aaccttttga tccactcaaa caaaagccga
    30721 tgacaaaaat catcggcttt tgttattgct gggaatttaa catctgtcgt gccatttcca
    30781 tactttggat aatcgctctg cggttgatag aatcattatt gctatctaac actttacgcc
    30841 aattatcgag agcttgttga aaattgttat ttaaaaagct gtcggaggct agcaggagta
    30901 aactggcatt ttcattttta tccaactgta gggcttgctc gataatggct tgaatttcaa
    30961 cggtcatttt ctgcccgtta tcgtaataac gagcggtggc aatcgccccc aaaatagccg
    31021 ctcgttttcc gagtagcttc tcggcattat cgtagcaaac cagtgccgaa tcaaaatcat
    31081 tgcttaacgc ataagcctgc cctagttcgt accataaatc accgttattc gggttttctc
    31141 gaagctggtt ttgcagactc aaaatatagc gttcattttt cgatgtgccg tgtgcatcgc
    31201 tcatctgttg ttgaaaatct tgatgttgtt gcaaacctga ttgcaccact tgataacgtc
    31261 cggaaagccc atagtaagtc attgctaaca acaaaatcgc cacgcaactc aggcttgcga
    31321 ttttagcaag cggtcgattt tgagcattat tttgcaaaac gctctgttca aattgcgttc
    31381 gttcaaattg gtaacgttgc tctgcctcac gctcaaactc ttgtctgacg tcatctgcaa
    31441 aatgttgggc aaatttaacc gcttgttggt agttttcttg gcttaattgc tcacgcgttt
    31501 tcatttttgt tgcctttatt tttgctagtt cgccacaaaa tagctagaaa taacaggcta
    31561 aacaagccaa ccggcaagcc ccataatacc catgtctgtg gcgtgaatgg tggatcgtaa
    31621 ttcacaaaac tgccgaaacg ctcggtcata atgcggataa tttcctcatt acttttccct
    31681 tgattcacca tttcatacac ttcaattcgc atattgtaag ccgccgtcgc attggattcg
    31741 accaaatttt ggttctgaca ttgcaaacat cgcaacgaac gagccagtga aatcgcccgt
    31801 acccgatccg cctcattttg aaattgaaag gtgtccacca tttcagcttg aaccgtgccg
    31861 acaaatagca acaagccaaa tacaagcggt aatattttgc ggattttttg caaaaagccg
    31921 atggaaatta tgctatttct catttctgag agcctctaat ttgggtagga aatcctgtgc
    31981 aaaatcaggg ttgtaaccct tttgttggta acgcactaca ccgtgtttat caatcaaata
    32041 actggaaggt gcagaagaga ctttcagggt ttggatcaaa aagccttttt cgtaatcatc
    32101 aataattaaa ctaaacggat ttccccagtt tttcaatgcg ttgagggcat catttgggcg
    32161 gtcgctataa gttaagccga caatcggcac gcctttttgt tttagctcca acaaaatcgg
    32221 gaactcttta atgcaccaag tacaccagct cgcccacaca ttgagaatat aaggctcttt
    32281 cggcaagctg ttgttattta aatgcgcgtt actatcaagt aagttcttgc ctacaaactc
    32341 tggaaacggc ttgccctgcc aatcttcagt gggagcaagg gcatctttat tcattaacgg
    32401 cacagtcaaa aagccaacaa taactacaag taacaggagc ggaataagta acaggatttt
    32461 tttcattttt tgttttctct acgataaccg aataatgcca acagggcggc cattaccatc
    32521 atcataccac ctaaccataa ggcttgcaca taaggcttat agtgcaaacg gaaggcatat
    32581 tctaaattgc cgaacttatc ccccatcaca atataaatat cgtctaaatt gtggtggaaa
    32641 agccctactt ctgccattgt catcgttctt acatcataat agcgtctttc cggtgtgacg
    32701 gttgccagca actgttcatc tcggctgata gaaaaaacgg cttgctcggc ggtgtagttc
    32761 ggaccgatga gatcgtgata atcttcatat ttaaaggtat aaccggcaag ttccgctgct
    32821 tgattcggct ttaaccgcac gccgatttca tcgccgtaat aactgttcat cattgcccca
    32881 atcacgcaaa ccgcaaagcc gatatgggct aaccgcatcg caagcggtcg aatttgccac
    32941 attttttgcg aatagggcaa atgagtgaga ataatccaga tcgcaaggct gataaatatg
    33001 gtgggtaacg gctgcaaagc aaaatgctct ctttgcgaga tggaggcata aatcaaccct
    33061 aacgctaaac cgactgcaat cggcagcaac caaagtttta ccaatatctg cttatttgaa
    33121 atctgtttcc agcccagcac caccgcaaag cccattacta tcattaacag taacgctagt
    33181 ggcgtgaata cgctattgaa atagggggcc cccactgaaa tcgatcccca attcatcact
    33241 gtgaagatca tcgggtagaa agtccccagc aataccacag aagcagccac actaaataag
    33301 ccgttaatca ataaaaatgc cgtttcttta gaaagtaagt tgaaacgcac tttgccttgc
    33361 cagagattcg ctcggaatgc aaacagagca agggcaatga aacttaagcc gaagaataag
    33421 atcagcagtg ccattcctct gtcgggatcg accgcaaagg catgaaccga ggtcagtaca
    33481 cccgaacgaa caataaacgt gcctaatagg cttaaagcaa aggcgaaaat ggcaagtaga
    33541 atcgtccaat aatagaaaat gccacgctgt tggctcacaa ttaaactatg caccaatgcg
    33601 gtgccaagta gccaaggcat tagggaggca ttttccaccg gatcccaaaa ccaccagcca
    33661 ccccagccga gttcgtaata tgcccaccac gcccctaaaa taatgccggc ggtgagaaat
    33721 ccccacgaaa tcatcgtcca cggacgaagc caacgcataa tcgcagcgtc cattccgcct
    33781 gaaacgaggg cggcgacaat cattgcaaag ctcaccgcaa agccgacata gcccaagtag
    33841 agcaaaggcg ggtgaaagat gagcccaata tcttgcaaca ttgggttgag atctcgccct
    33901 tcaggtggtg gtggaaagcc acgttcaaat gggctggaaa ccaatagaat gaaaagtaga
    33961 aaacctagtg caattagccc taacatcgct aaggttcggt tggcaaacaa gcggtcaatt
    34021 ttttgcgaaa atttgcaaaa taccgcagac caaatcacaa gagcggtgag ccaaaacagc
    34081 attgaacctt cgtgtccgcc ccaagtggcg gcaaatttaa aaaaatcggg gagctggctg
    34141 ttggaatgag cggcaacgta gataaccgaa aaatcatcgg ttagaaaagc ataagctaag
    34201 gtagaaaagg aaaatgtggt aaaagcagct tgcaaataag tgaaaagcgg agccaatgcc
    34261 agccaatgat attgcttgcg aacttcgcct agaagtgcaa aaccaacttg aaaaatggca
    34321 ctaattgcag ccaataaaag tgaaaaatag ccgagttccg gtagcataaa aaatccaaaa
    34381 aatgaccgct tgtgaatgta aaaaaagccc tctccacttg tgggagaggg acagattttt
    34441 cttcgttcag aagaaaaatc agggagaggg gaattaaata attttgctaa aaataacaat
    34501 actccctctc tctgaaaaat atttctgaac gaaatatttt tcggtctcaa tactcgctac
    34561 gctcgctcct tcggagccgt tggcaaagcc aacgttcaaa tgtaaacatt tgtcccacaa
    34621 ggggagagag tatatcctaa cttgcaaccg ttagttgccc tgcataaagg ataaagtaac
    34681 gcaagcagag tacaccgatt aagtcgaaaa cggaaattaa gataataaat ttcacgttat
    34741 gtttcaagcg gtggctacca aaaatattgg caacaagcgg aatcgcaata ccgattaaca
    34801 ttacgcctat ccagaacaca ttcccccaga agccgttaag tgcattggtt aaagcgagcg
    34861 atttatctgc tccaccgaag tgtaagccca caaagaacgc tacaattaag cctaattcgg
    34921 ttaccataat cggcacttca aatttgtgca taaagtggac ttcgtggctt tcaccggata
    34981 acttgcctgc gagtaaaatc actaggaaag ttgctgcaat acctgacgat gcccctgatg
    35041 ccaagaacaa tgccggtaac accgggttgt tgagcattgg ataactcact aacgccgaga
    35101 gtaagaaacc ggtgtaagca ccaagtacag cagccaatac gaataagata aattcaattg
    35161 gttttaacag cttcgcttcg gcaaaatcga tcaaaccaga gaccacaggt agataccgaa
    35221 caatccaatc tttaaacatt atggcgatcc aaaccaccaa tactgccata taaagttgga
    35281 ataacattac ccccatcgac attactgagg taaagttata gttgaacatt aatttccaga
    35341 atgtccaagg tttggttaag tggaaaatca gtaacagtaa gccgataatg gttggtaatg
    35401 tgccaagaat agccgcacta cgaataatcc agttttggct tggtttttcc attttgacac
    35461 cgctattacg gtaagcaatc gctaactgaa ccgcacctga tgaaatacca agtaggaata
    35521 agtaaatagc gatagtgcca tcccaaacaa ggtttggggt ttggaaaggt acatattcat
    35581 tcattatcta tgttctcctt taccaaatgg aatgtgatat aaattcggct ccgtgcctaa
    35641 tgccgttttg gtgcgataaa ccggattatt tttcacttta tggaaaatat cgctacttgg
    35701 atcattcata tcaccaaagg ttaaagcttt agtcggacaa gcctctacac aagcaggctg
    35761 tttgccttct gcaagattgg tatctcggca aaagttacat ttatccgccg attttttctc
    35821 agggtgaata aaacgtacac gatacgggca aaccgcaata cagtattggc aaccgacaca
    35881 caaatctgag tgtacatcaa caatcccggt ttcaggatcg ataaatgaag caccggtcgg
    35941 gcaaacactc acacaaggtg cattggtaca gtgttggcaa gattggcgga aaaactcata
    36001 ttgtacgttc ggaaactcac cgaaaggctc actacggata atttctaaac gagaaacccc
    36061 ttccggcact ttgttggtgg tgcgacaagc gtccatacaa gccgtacagc cgatacaggc
    36121 agtttcatcg tgaaccatcg catagcggat tttcttttgt tctttctcag tagcaagagt
    36181 tatggaggtg gcaagccctg tacttgccac aactgcgata gcacctgccc ctgagacgaa
    36241 atctctacgg gtgcaagtca ttattttgtt ccttttgctt ctgtggcttt catttcagga
    36301 tttttaaatt cgcctgaatg aattttggta tgacaatccg tacaaagttt aatgcgatct
    36361 ttttcaggaa tgtctttcat cggatctttt tccgggtgaa tttcatgaca gttggtacaa
    36421 gcaattttag ttgcgtgcgt gtcgtgagcc cagaattttt cacgcaattt ctctgccgta
    36481 tggcaagcaa aacagacttg attttgctca tttaccgaac gttcaagtga tgggttactt
    36541 gctttaccgt gtgggttaaa acgcattacg tcttttgccc ctttgcggtg gctttcagaa
    36601 atattaccgt ggcaacttac acaagtgagt ggctctccat tattcgggct tttcacatct
    36661 ttttggaaat gtttgcctgc gtgatggaaa ggcttacctg ttgcgtttgc cgattcgtga
    36721 cattgagtac aatatttatt tggatcacgg cgtgcatctt gagctacttt tgcatcatca
    36781 gccgtttctg attgccaaag aggttttggc tgctcaggca ttaacgcatt cgcactggaa
    36841 attgcaaaaa aacctgcaaa tacgaccgct tgtatgaggg cgactgctcg tcctgctttt
    36901 gagattaatt ttttcatagt tcacctcaag ctacattatt ttgcttctgc ttttggtgct
    36961 gctaccggtt tgtctgcttc ttctgcgggt aataaacctt tagcacgagc ttctttttcc
    37021 cattgaggaa ccacagtttt taagaactca tcttttgctg cttgctcttt aggaatatct
    37081 aaaccaatag caagttgtgc tttctcttta gttgagatgt ccggaatcgc cactggcgtt
    37141 gttacaccgt gtttcgctaa cactacacct aatttagcac gggcatctgc tgcacggtcg
    37201 atacctgttg cgatggtacg taacattaca tcaggtgcgt ggaagtggtt accgtgacct
    37261 gccgcagagt aatcccaacg ccattgagcg tgacgaattg ccattaagat ctctttcatc
    37321 tcttcttgag ttgctccagc ttcccaagca gctttcgctt caaagtgagc tttcactaat
    37381 tgatcttcta agcgaatcat tgcctctttt acttcgtgtt tatactcttt tacacgtttt
    37441 tccaatgttt ctttgctttg ttcatgacaa gttttacaag tcgcttcaaa ttggtcaaac
    37501 ggattaccga ttttgtggtc agtataaact ttgccgtctt tgtctttcac ttttggcata
    37561 tggcaatcaa tacaggttac accatttttc ccatgtgtac cttgtgacca aacttcaaaa
    37621 tctgggtgct gcgtttttag catcggagct ttcgataaag catgagtcca gtctgtaaaa
    37681 ttgatttcat cgtagtattt ttcaatgcta tctacatcta cacctttatc ccaagggaaa
    37741 gttacatctg ttttattttt gaaatagtac tccacatggc agttagcgca cacagcaggg
    37801 cgtttaccat gtttatctaa atcctcaaac ttccaaccaa ccgtattcaa tgcacgtaat
    37861 acgtgaggac gtgcaacacg tagtgcaggt ttaccttgtt taaactcttc tgatgtcgtg
    37921 tcatggcagt ctgcacaacc tattgagttt acaatttcag caccatattt cgcccattta
    37981 ggatcaaaat atcctcgctc acctttctcc tcaattaagc gtggaacatc agggccttta
    38041 catgtccaac aagccatagg ttgtggacca tcattttcat ctttaggcgc gccggtacgc
    38101 aaaatatcac gcacatcggt aactgcataa aagtgacctc gtggtttatt ataatctttc
    38161 gcaaaagcat agcctgccca caaaataaca taacgagggt cagcctctaa cgcacttcct
    38221 cgatctgtgg attttgcagt tgacttccaa gaatcgtatt gtagcggata tttttctgca
    38281 aataggtggt ttgcagactc aattttcacg cctaattttt catgcttaac tgctttatct
    38341 gttaatgatt cagttttcgc ctcttcagct aaagcagttt gtaaacaccc caatattgaa
    38401 attgttgcca cagctaggct ttttattaaa aatttcattt tgg
//
LOCUS       DANLUT010000007        38350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLUT010000007 DANLUT010000000
VERSION     DANLUT010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 38350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..3052
                     /locus_tag="PXB38_000318"
     CDS             <1..3052
                     /locus_tag="PXB38_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5352685.1"
                     /translation="TLPITETNNFIVLDKYEKIIQPTAYQTETDLERELITDLQFQGY
                     EYRPDLNNQEKLLANLREQLEKLNNVRFLDSEWKRLLEEYIDKPSENIIEKTRKIHHD
                     HIYDFVFDNGRIQNIYLLDKKEIARNKVQVINQFEQKGSHLNRYDVTILVNGLPLIQI
                     ELKKRGVAIREAFNQIHRYSKESFNKENSLFKFLQIFVISNGTDTRYFANTTKRDKNS
                     FDFTMSWAKSDNGLIKDLKDFTATFLQKNTLLNVLVNYSVFDVNDTLLLMRPYQIAAT
                     ERILWKIKHTHFTNTWNKPESGGYIWHTTGSGKTLTSFKAARLATELDCIEKVFFVVD
                     RKDLDYQTMKEYQRFSPDSVNGSESTAGLKRNLEKQDNKIIVTTIQKLNNLMKSEDNL
                     PIYQQPVVFIFDECHRSQFGEAQRNLKRKFKKFCQFGFTGTPIFPENALGAETTALVF
                     GTQLHSYVITDAIRDEKVLKFKVDYNDVRPQFRTMEIEKSPEKLTALENKKALLHPER
                     IKEITQYILAHFKQKTHRLNATGKGFNAMFAVSSVEAAKLYYEQFKIQQQAVQNPLKV
                     ATIFSFAANEEQNAIGEIADETFEPTAMNSSAKEFLSLAIDDYNEQFKTNYGVESKEF
                     QNYYRDLAMRVKNQEIDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRI
                     YDSTKTFGNIVTFRDLEQDTIDAITLFGDKNTRNVVLERSFDEYMQGYEKSSGEYQRG
                     YLVVVKELQTKFPDPTNLEKEEDKKAFTALFGEYLRLENVLQNYDEFHELKNPENIEN
                     IVCEPTANYLNHTQIILPERKLQDYRSTYNDIREWQRQQRQGNNTQTSTIDWSDVVFE
                     VDLLKSQEINLDYILELIFEHNKKIKNKPALIEEIRRTIRSSIDNRAKESLVVDFIHQ
                     TDLDTIPDKAGVIEAFFQFAQQEQKKEAETLIETENLNVEAAKRYITTSLKREYASEN
                     GTDLNDILPKMSPLNPQYKTKKQTVFQKIVAFVEKFKGVGGYLS"
     gene            3136..5085
                     /locus_tag="PXB38_000319"
     CDS             3136..5085
                     /locus_tag="PXB38_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5352686.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELDPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENASHEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRA
                     DLDTEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNRLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFASQKQSVETPRLASEKSPVKTTESDTKHRVPT
                     EDAKKKVKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNAQLQKL
                     ADTEAALEQAFERWEALENIKNGNV"
     gene            5115..5870
                     /gene="tcdA"
                     /locus_tag="PXB38_000320"
     CDS             5115..5870
                     /gene="tcdA"
                     /locus_tag="PXB38_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL5352687.1"
                     /translation="MERIDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWAV
                     EALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVEI
                     IDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDPT
                     KIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEVS
                     ATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            5917..7284
                     /locus_tag="PXB38_000321"
     CDS             5917..7284
                     /locus_tag="PXB38_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL5352688.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDPVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            7304..8851
                     /locus_tag="PXB38_000322"
     CDS             7304..8851
                     /locus_tag="PXB38_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL5352689.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMEQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            9074..10108
                     /gene="metN"
                     /locus_tag="PXB38_000323"
     CDS             9074..10108
                     /gene="metN"
                     /locus_tag="PXB38_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL5352690.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            10098..10775
                     /locus_tag="PXB38_000324"
     CDS             10098..10775
                     /locus_tag="PXB38_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352691.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLIVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            10798..11631
                     /locus_tag="PXB38_000325"
     CDS             10798..11631
                     /locus_tag="PXB38_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5352692.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            11714..12544
                     /locus_tag="PXB38_000326"
     CDS             11714..12544
                     /locus_tag="PXB38_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDL5352693.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVVVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            12596..13387
                     /gene="metQ"
                     /locus_tag="PXB38_000327"
     CDS             12596..13387
                     /gene="metQ"
                     /locus_tag="PXB38_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL5352694.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQGLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(13431..14582)
                     /gene="metK"
                     /locus_tag="PXB38_000328"
     CDS             complement(13431..14582)
                     /gene="metK"
                     /locus_tag="PXB38_000328"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL5352695.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVAAPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(14765..15607)
                     /locus_tag="PXB38_000329"
     CDS             complement(14765..15607)
                     /locus_tag="PXB38_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL5352696.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLEPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNMFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            15667..15984
                     /locus_tag="PXB38_000330"
     CDS             15667..15984
                     /locus_tag="PXB38_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5352697.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            16074..16787
                     /locus_tag="PXB38_000331"
     CDS             16074..16787
                     /locus_tag="PXB38_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL5352698.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            16787..17281
                     /locus_tag="PXB38_000332"
     CDS             16787..17281
                     /locus_tag="PXB38_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL5352699.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            17386..18666
                     /locus_tag="PXB38_000333"
     CDS             17386..18666
                     /locus_tag="PXB38_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5352700.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDDSVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIDGKEMKPFRFKDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(18753..19790)
                     /locus_tag="PXB38_000334"
     CDS             complement(18753..19790)
                     /locus_tag="PXB38_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352701.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPHSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKADALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            20012..20708
                     /locus_tag="PXB38_000335"
                     /pseudo
     CDS             20012..20708
                     /locus_tag="PXB38_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
     gene            20719..21021
                     /locus_tag="PXB38_000336"
     CDS             20719..21021
                     /locus_tag="PXB38_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL5352702.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTVLSVALGIFGVNVFLSLLG"
     gene            complement(21142..22443)
                     /locus_tag="PXB38_000337"
     CDS             complement(21142..22443)
                     /locus_tag="PXB38_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5352703.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVSLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(22576..23550)
                     /gene="secF"
                     /locus_tag="PXB38_000338"
     CDS             complement(22576..23550)
                     /gene="secF"
                     /locus_tag="PXB38_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL5352704.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGNMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(23560..25401)
                     /gene="secD"
                     /locus_tag="PXB38_000339"
     CDS             complement(23560..25401)
                     /gene="secD"
                     /locus_tag="PXB38_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL5352705.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSELQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(25441..25734)
                     /gene="yajC"
                     /locus_tag="PXB38_000340"
     CDS             complement(25441..25734)
                     /gene="yajC"
                     /locus_tag="PXB38_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5352706.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            25935..26492
                     /locus_tag="PXB38_000341"
     CDS             25935..26492
                     /locus_tag="PXB38_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL5352707.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(26533..27501)
                     /locus_tag="PXB38_000342"
     CDS             complement(26533..27501)
                     /locus_tag="PXB38_000342"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL5352708.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(27627..28790)
                     /gene="galK"
                     /locus_tag="PXB38_000343"
     CDS             complement(27627..28790)
                     /gene="galK"
                     /locus_tag="PXB38_000343"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL5352709.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(28800..29846)
                     /gene="galT"
                     /locus_tag="PXB38_000344"
     CDS             complement(28800..29846)
                     /gene="galT"
                     /locus_tag="PXB38_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL5352710.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            30059..30910
                     /locus_tag="PXB38_000345"
     CDS             30059..30910
                     /locus_tag="PXB38_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL5352711.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(30996..32081)
                     /locus_tag="PXB38_000346"
     CDS             complement(30996..32081)
                     /locus_tag="PXB38_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5352712.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(32103..33083)
                     /locus_tag="PXB38_000347"
     CDS             complement(32103..33083)
                     /locus_tag="PXB38_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5352713.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(33186..34284)
                     /gene="prfB"
                     /locus_tag="PXB38_000348"
     CDS             complement(join(33186..34208,34210..34284))
                     /gene="prfB"
                     /locus_tag="PXB38_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL5352714.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            34540..35502
                     /locus_tag="PXB38_000349"
     CDS             34540..35502
                     /locus_tag="PXB38_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL5352715.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTWWLRKFGEDIWDIEKEALK"
     gene            35749..36390
                     /locus_tag="PXB38_000350"
     CDS             35749..36390
                     /locus_tag="PXB38_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL5352716.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            36557..37378
                     /locus_tag="PXB38_000351"
     CDS             36557..37378
                     /locus_tag="PXB38_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL5352717.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERPELAKWFYAHRLNQYRQAEPHQGYAILKRWAESKQ
                     HGYFVFTSNVDGHFRKAGFSEDRIYECHGTLDHLQCLANCKNKSWWAYDYQPVTDDEH
                     CLVLSEPPTCPDCGGLARQNVLMFNDWSYAEGYQLTKETLLDEWLRKAQRPVVIEIGA
                     GKVVPTVRNFSERTAKQKKGGLIRINPIDAGVPKMHFLSLEMGGLEALQGIEECL"
     gene            37454..38221
                     /locus_tag="PXB38_000352"
                     /pseudo
     CDS             37454..38221
                     /locus_tag="PXB38_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432795.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
BASE COUNT        11440 a         7537 c         8327 g        11046 t
ORIGIN      
        1 tactctccct atcaccgaaa ctaacaattt tatcgtatta gataaatatg aaaaaatcat
       61 tcagccaacc gcttatcaaa ctgaaacgga tttagagcgt gaattaatta ctgatttaca
      121 atttcagggc tatgaatatc gtcctgattt aaataaccaa gaaaaattat tggcaaattt
      181 gcgtgaacag ttggaaaaat taaataatgt gcggttttta gattcagagt ggaaacgatt
      241 attagaagaa tatattgata aaccgtctga aaatattatt gagaaaacca gaaagatcca
      301 tcacgaccat atttatgatt ttgtgtttga taatgggcgg attcaaaata tctatttgtt
      361 ggataaaaaa gaaattgctc gtaataaagt acaggttatc aatcaatttg agcaaaaagg
      421 ttctcatctt aatcgctatg atgtaacgat tttggtcaat ggcttgccat taatacaaat
      481 tgaattgaaa aagcgaggcg tggcaattcg ggaagctttt aatcaaattc atcgttatag
      541 taaagagagt tttaataaag aaaattctct gtttaagttt ttgcagattt ttgtcatttc
      601 taacggcaca gatacccgtt attttgccaa tacgaccaag cgggataaaa acagctttga
      661 ttttacaatg agttgggcaa aatcggataa tggcttaatt aaagatctaa aagattttac
      721 cgctaccttt ttacagaaaa ataccttatt aaatgtgcta gtgaattatt cggtatttga
      781 tgtaaatgac acgttattat tgatgcgacc ttatcaaatt gcggcaaccg agcgtatttt
      841 atggaaaata aaacatacgc attttaccaa tacttggaat aaaccggaga gtggtggtta
      901 tatttggcat actaccggtt cgggtaaaac gctgaccagt tttaaagcgg ctcgattggc
      961 aaccgaatta gattgtattg agaaagtctt ttttgtggtg gacagaaaag atctcgatta
     1021 tcaaacaatg aaagagtatc aacgtttttc accggatagc gtaaacggtt cggaaagtac
     1081 agccggtttg aagcgtaatc ttgaaaagca agataataaa attattgtta ccactattca
     1141 aaaattaaat aatttaatga agagtgaaga taatttacca atatatcaac agccggtagt
     1201 gtttattttt gatgagtgtc atcgtagcca atttggtgaa gctcaacgta atttaaaacg
     1261 aaaatttaaa aaattttgtc aattcggttt taccggcacc cctattttcc ctgaaaatgc
     1321 attaggggca gaaacaaccg cattggtatt tggtacacag ctacactctt atgtgattac
     1381 cgatgcgatt cgtgatgaaa aagtgctgaa atttaaggtc gattataatg atgttcgccc
     1441 acaatttagg acaatggaaa ttgaaaaaag tcctgaaaaa ctcaccgcac ttgagaataa
     1501 aaaagcctta ttgcaccctg agcggattaa agaaattacc caatatattt tggcacattt
     1561 taaacaaaaa acgcaccgtt tgaatgccac aggcaaaggc tttaatgcaa tgtttgccgt
     1621 cagttctgtg gaagcggcaa aactctatta tgagcagttt aaaattcagc agcaagcggt
     1681 gcaaaatccg ttaaaagttg caacgatttt ttcttttgct gccaatgaag agcaaaatgc
     1741 gattggtgaa attgccgatg aaacctttga acctaccgca atgaatagtt cggcaaaaga
     1801 atttttgagt ttggcgattg atgattataa cgagcaattt aaaacaaatt atggtgtaga
     1861 aagtaaagaa tttcaaaatt attaccgtga tttagcaatg cgggtgaaaa atcaggaaat
     1921 tgatttattg attgtagtag gaatgttttt aacaggcttt gatgctccaa cgttaaatac
     1981 cttatttgtg gataaaaatc tgcgttatca cgggttgatg caagcctttt cccgcactaa
     2041 ccgcatttat gactctacta aaactttcgg caatatcgtg actttccgag atttggaaca
     2101 ggatacgatt gatgcgatta cgctatttgg cgataaaaat acccgtaatg tggtgttaga
     2161 acgtagtttc gatgaatata tgcagggcta tgaaaagagc agtggtgaat atcaacgtgg
     2221 ttatttggtg gtagttaaag aattacaaac taaatttcct gatccaacga atcttgaaaa
     2281 agaggaggat aagaaagctt ttactgcatt atttggtgaa tatttacgtt tggaaaatgt
     2341 attacagaat tatgatgagt ttcacgaact gaaaaatcct gaaaatatag agaatatagt
     2401 ttgtgagccg actgcaaatt atcttaatca cactcagatt attttgcctg aacgaaaatt
     2461 gcaagattat cgttcaacct ataacgatat tcgggaatgg caacgccaac aacgacaagg
     2521 gaataatact caaacttcaa caattgattg gagtgatgtg gtgtttgaag tggatttact
     2581 aaaatcccaa gagatcaatt tagattatat tttagagctt atttttgaac acaataagaa
     2641 aatcaaaaat aagcctgcgt taattgaaga aattcgccgt actattcgtt caagcattga
     2701 taatcgagcg aaagaaagtt tggtagtgga ttttattcac caaaccgatt tggatactat
     2761 tcctgataaa gccggtgtca ttgaggcatt cttccaattc gcccagcaag aacagaaaaa
     2821 agaggcagaa accttaattg aaaccgaaaa tttaaatgta gaggctgcaa aacgttatat
     2881 caccacttca ctaaaaaggg aatatgccag cgaaaacggc acggatttaa atgacattct
     2941 gccgaaaatg agcccactta atccgcaata taaaactaaa aaacagacgg ttttccaaaa
     3001 aatcgtggcg tttgtggaga agtttaaggg agttggtggg tatttatctt aacaagaata
     3061 aaaacgagta gaacagaacg ctttcataca agcggttaga gaattgctaa aatttacaat
     3121 tttaacgaga atactatggc acttatcaat ctttccaacg cctatttagg ctttggcgat
     3181 catcctttat tggatcatac tgaattacat atcgaacccg gcgagcgggt ttgtttggtg
     3241 gggcgtaacg gggcgggtaa atcgaccctg atgaaaattc tggcgggcga agttcagctt
     3301 gatgacggca agttggtatt tgaaaaagac attgtcgtta cacgccttga acaagatccg
     3361 ccccgccata ttgaagaaac ggtgttcgat tatgtggcag aaggcattgc ccatcttgcc
     3421 gacttattga agcaatatca ccacatttcc ctgcaaatgc agaccgatta cagcgatgaa
     3481 ctgctcgcca aactttcagc ggtgcagtcg caattagaac acgctaacgg ttggcagttt
     3541 gaaaaccgca ttcaagacac cttgaaactg ttggaactcg accccgacaa acgcctgtgc
     3601 gaactctcgg gtggttgggt acgccgtgcg gcattggctc gggcgttggt tgccgatcct
     3661 gatgtattgc tgttggacga gccgaccaac cacctcgaca tcgaggcgat tgcgtggctg
     3721 gaaaatctgt tgttggattt caaaggcagc attattttta tctcgcacga ccgtgccttt
     3781 atccgcaaaa tggcgactcg gattgtggac ttggatcgag gcaaactggt ttcctaccca
     3841 agcaattacg ataaatactt ggaagaaaaa gccgaagatc tgcgagtgga agcgttgcaa
     3901 aatgagctgt tcgacaaaaa actcgcccaa gaagaggtct ggatccgtca agggattaag
     3961 gcaagacgca cccgaaacga agggcgtgtg cgggcgttga aagcgttgcg tgaagagcgt
     4021 agaaaccgcc gagaggtgca aggcacggcg aaaattcaga tcgacaatac tgcacgcagc
     4081 ggcaaaattg tgtttgaagt ggaaaatgcc agccatgaaa tcggcggcag aaccctgctg
     4141 aaaaatttca gcaccaccat tttgcgtggc gataaaattg ccttgattgg ggcgaatggg
     4201 atcggcaaaa ccacgctgat taagctgtta cttggcgaaa ttcagccgac atcaggttcg
     4261 gtgcgttgtg gcacaaaatt ggaagtggcg tactttgacc aataccgagc cgatcttgac
     4321 actgaaaaaa ccgtgatgga caacgtggca gatggcaagc aagatgtaga agtaaacggg
     4381 gtgaaacgcc acgttcttgg ctatctgcaa gacttcttgt tcccgcccaa acgggcaatg
     4441 acaccggtga aagccctttc gggtggtgaa cgcaaccgct tgttgctggc aaaactgtta
     4501 ctcaaaccga acaacttgct gattttggac gaaccgacca acgatttgga cgtggaaacc
     4561 ctcgaactgc tggaagagat gctcaccgac tatcaaggca ccttgattat tgtcagccac
     4621 gaccgtcaat ttgtggataa taccgtaacc gaatgctact tcttcgaggg cgaaggcgtg
     4681 gtgaataaat atgtcggcgg ctatttcgat gccaaacaac agcaggaaaa ttactttgcc
     4741 tcccaaaagc agagcgtaga gacgccacgc ttggcgtccg aaaaatcgcc tgtaaagact
     4801 actgaatcgg acacgaagca tcgtgtccct acggaagatg cgaagaaaaa agttaaactt
     4861 tcctacaaag aacagcgtga actggacgag ttaccggcta aaatggaaca gctcgaagcc
     4921 gatattgaag ccttgcaagc cgaagtaaac agtgccgaat tcttcgccaa agatccaagc
     4981 tacaccaatg cccagctaca aaaacttgcc gacaccgaag ccgcgttaga acaagccttt
     5041 gaacggtggg aagcgttgga aaatattaaa aatgggaatg tgtaagcggt catttttacg
     5101 gaaaatttta caaaatggaa cgaattgata actacgaaca gcgttttggt ggcattggtc
     5161 gcctttatac gccggaagga ttggagaaac tacgccgttc gcatatttgc gtgattggga
     5221 ttggcggggt tggctcgtgg gcagtggagg cattggctcg ctcaggtatc ggtaagatca
     5281 cgatgatcga tatggacgat atttgcgtga ccaatatcaa ccgccaaatt cacgcaatga
     5341 gtggcacggt ggctcaactg aaaaccgaag cgatgaaaga gcggattgag cggatcaacc
     5401 ctgaatgtgt ggtggaaatt attgatgatt tcttaacgca ggataatctc gcagactacc
     5461 tcaatcgagg atatgactat gtgatcgatg cgattgacag tttgcgggta aaagcggcga
     5521 tgattgcgtt ttgtaaacgc aataagatca aaattatcac caccggcggg gcgggcgggc
     5581 agaccgatcc gaccaaaatt caaattaccg atttaagcaa aacggtgcaa gatccgttgg
     5641 cggcaagggt tcgtagcctg ttgcgtaaag agtacggttt cagcaataaa aacaaattcg
     5701 gcgtggagtg cgtttcttcg actcagcaac tgattttccc acaaatgggt gaggcctgtg
     5761 aggtgtcggc aacaatgaac tgtgccaacg gctttggagc ggtgacaatg gtgacggcaa
     5821 cgttcggctt ttttgcggtg agtcgggtga ttgataaact attaaaataa caagcggtca
     5881 tattaaatga attttttgca aatcaaggag taaataatgg caatacatcg agtcaacccg
     5941 aaagggagta tggaacagct ttcccatttg gaaatggagt tgttggcaaa gaatacgcag
     6001 ggtaatttgc atcaacttta tcgtaattgc tctttggcgg tgctaaattc cggtgtgcat
     6061 accgatgaca gccgagcgtt gttaagccaa taccctgatt ttgaaatccg cttattaacc
     6121 cgtgaaaaag gcgtgtcgct tgaattgcat aatccacccg aaactgcgtt tgttgacggc
     6181 aagatgattt tgaatattca atatcacctt tttgcggtgc tgcgggatat tgtgtttgtg
     6241 aatgcgttaa aaaatgcgat tagaccgctt gaagagactt ctttagaagc cttaaccacg
     6301 aataccgtat tttcgatttt gcggaatgcg aaagcgattg aaatgaatac cgacccaaat
     6361 ttggtggtgt gctggggagg gcattcgatt aatgaaaccg aataccaata ttgccgtgcc
     6421 gtcgggcaag agtttggctt gcgtgagctg aatattgtga ccggttgcgg agccggtgtg
     6481 atggaagccc cgatgaaagg agcggctatc ggacacgcca atcaacgtta taaaaacggg
     6541 cgttttatcg gcattaccga gccgtctatt attgcctccg agccgccaaa cccgattgtg
     6601 aatgaattgg taattatgcc ggatattgaa aaacggttgg aagcctttgt gcgtttaggg
     6661 cacgccattg tggttttccc gggcgggccg ggaacgctgg aagagttgct gtatattatc
     6721 ggtattaagt taaacccggc taaccatgct cagcaattac cactgatttt aaccgccccg
     6781 aaagaatcgg cagactattt ctatgccatc gatcaattta ttggcgaaac tttaggcgaa
     6841 gaagctcgca gtttgtatga aattattatt gatgacccgg tgttggtggc tcgtaaagtc
     6901 aagcaagcga tgattgaggt aaaaagcagc cgttatgaaa gtggtgatgc ttataatttc
     6961 aactggtcgt taaaaattga ggaagatttt attacgccat ttattccaac ccacgaaaat
     7021 atggcaaacc tgaatttaag tttagcacag ccaaaagagc agctggctgc gaatttaaga
     7081 cgggcatttt cagggattgt tgcaggtaat attaagccgg agacctccga tttaattgag
     7141 aaatatgggg tgtttaaatt acacggcgat cgtaaattaa tggagcatat agataaactg
     7201 ttggagcgtt ttgtggttca acaccgtatg aaaattccaa cgggtgaggc gtaccaacct
     7261 tgctatgaaa ttgtaaaagg gtaatgctaa caaggggtaa ggtatgtatt taaagcatat
     7321 tgaaatcagt ggctttcgtg gtattaacca tttatcgctc cagctacgac caaatatggt
     7381 attgattggc gaaaatgcgt gggggaaatc cagtctgatt gatgcattaa gcctgatttt
     7441 taaccttgag caggcgttgt atcaatttca gttcaaagat ttccatattc aatacaccga
     7501 tacccccaac caagtgcggg acattcaact ggtgtttacc ttttgtgaag agcatcagca
     7561 cgatttagcg gtgcaatttc ccgcttattt ggcacaagcc gcgttttata ttgataatca
     7621 ccgctgtgtt tcgcttgccg taaccggaaa attacacgga gagcagatta gcaccgacta
     7681 tcaatttgtg gatcaaagcc taaaaccgat ccagatagaa caagcggaaa acgccattcg
     7741 gcagtttatt taccatcacc ctgtttatcg cctgcgtgat gcaaggctca ataacagggt
     7801 gcataatgaa ttattactta aaggatcgtc tcaacttgaa gacgattttc aacgtgaatt
     7861 aaacgccctc tcttcgctac tgaaatacta ttttctaacc agccaaagtc gctatttgat
     7921 caaaaccagt atgcaagaca ccgcattgtg gtgggaaaaa gtaaaatccc tctgtttacg
     7981 cctaaaacag cagccggaat tggtcgaatc tgctcagcag catatttcta ctctattttt
     8041 gtttaatcct agatctacag taatagaaaa gccgattatt ttatttgaag atctgaatgc
     8101 tcaactacac cctcgaatga ttgcgatttt ttgggaactg ctcggttttt tacccagcca
     8161 acggatcacc actactaatt ctattgaatt gttatcgcaa gtgcctctgc gtgaaatctg
     8221 ccgtttggtg cgtcatcacg atcataccca agcctattgg cttgaacgcc acagtttagg
     8281 caaggaagat ttgcgaaaat taacctttca tattcaccat aatcgtggct tggcactgtt
     8341 tgctaaagcg tggattttgg ttgaggggga aacggaggtt tggattttgc aagagctggc
     8401 gagattatta gatattcatt tggaaatgga agggatcaaa atcgttgaat ttgctcagtg
     8461 tggcttacgt ccgttaatta aatacgccag agcaatgggg atcgaatggt atgtgctgac
     8521 tgacggtgac gattccggca aacgttatgc agatacggta aaaagtatgg aagaggattt
     8581 tgctcaccgg ctcacgatgt tgccacaaaa agatatcgaa cattttttct acaaagcagg
     8641 cttgcggaat gtgtttatac agcttgcaaa ttggcgttca caagaaaaat atccggtgtc
     8701 ctacatcatt aaacgagcga ttcaacgaag ctcaaagcct gatttagcca ttgcattagc
     8761 caatgagatg gagcaacggg gagagcattc aattccaact ttatttaaac aattatttgc
     8821 agatgtgctg gcattgataa acaaagtata gaatacaagc ggttaaattt gacaaaaaat
     8881 tgccaatttt gaccgcttgt ttgcttgtga tgaaaaccaa tcatacaaaa ctctaattta
     8941 tttcaagtgc aagctattat tttatgcgtt atgcttattt ggaataaaaa aatcgggtta
     9001 gttgattgac atagcattct agacgtctaa aataaccaaa aataatagtt aattgaatgt
     9061 ggataaatag aaaatgattc agctgaaaaa tatcagcaaa caatttgagg taaagggcaa
     9121 aaaaattacc gctctggata atgtaaacct agaagtacca agaggcacta tttatggtgt
     9181 cattggggca tcaggggcag gaaaaagtac cttaattcgc tgtgtaaatt tattagaacg
     9241 cccaacaatc gggcaagtga ttgtcgatgg gcaagattta acggcaatgt cggataaaga
     9301 gttgattcac gctcgccgta atattgcaat gattttccaa cattttaatt tgctttcatc
     9361 acaaactgta tttgaaaacg tggcgttatc gttgcgttta agcaatacgc caaaagagca
     9421 agttgagaag aaagtcaatg agctgttgga tttagtgggg ttaacagatc gtaaagatgt
     9481 ttaccctgca aatctttccg gtgggcagaa acagcgtgta gcgattgctc gtgcgttagc
     9541 cagcgatcca cacgttttgt tgtgtgatga agcgaccagt gcgttagatc cggcgactac
     9601 gcaatccatt ttgcagctat taaaagatat taataaacgt cttggtttga cgattttatt
     9661 aatcactcac gaaatggaag tggtaaaacg catttgtgac cgagtagcag tgattgataa
     9721 agggcagttg attgaatctg gctcggtaag tgaaattttc tcgaatccga aaaccgaatt
     9781 agctcagaaa tttattcaat cgactttcca ttttgaatta ccgcaagaat ataccgagca
     9841 gctttcaagt tcgccgactg aacatagtaa gccgattatt aaatttgagt ttaccggacg
     9901 ttcggtggat gcacctttgc tttcaatggc atcgaagaaa ttcggcattg attttagtat
     9961 tttgatgtcg caaattgatt atgcaggcgg ggtcaaattt ggatttgtaa ttgcagaagt
    10021 gagtggtaat ccggattcca ttgcagaagc aaaattttat ttaattgata acaatgtaaa
    10081 agtagaggtg ttaggctatg tgggctgatt ttatgcagga gatgacgcca cagatgtgga
    10141 gcttagtatg ggaatctact tttgaaaccg tttatatggg ctttgtggca acggcattgg
    10201 cggtagtcat cggtttaccg attggtttct tggcgttttt aaccggtaaa ggcgaaattt
    10261 tagaaaatcc gagattacac caagtgttag atgtcgttat taacatcggg cgttcgattc
    10321 cgttcattat tttattgatt attttgttgc catttactcg cttaattgtg ggcacaacat
    10381 taggcacaac ggcagcgatt gttcctttaa gtgtttcggc cattccgttt tttgcccgtt
    10441 taacttcaaa tgcgttgctt gaaattccgt ccggtttaac agaagcggca aaatcaatgg
    10501 gagcaacaaa ttggcaggta gtgacaaaat tttatttacc ggagtcatta ccgattttga
    10561 ttaatggcat tacgctaacg ctggttgctt taattggcta ctcagcaatg gcgggggctg
    10621 ttggtggcgg cggtttaggc aatttagcga ttagctatgg cgaacaccgt aatatggtgt
    10681 atgtgaaatg gattgctacc attattattg ttgcgattgt gatgattagc caaaaattgg
    10741 gtgatcattt agcaaaacgt tacgatcatc gttaatttta tttaaaaaga ggtttctatg
    10801 agtttcaaga aaattttagg cgttgcattg gtttctgcat tagcattaac cgcttgtaaa
    10861 gaagagaaaa aggcagaatc taccgctgct ccggcagctc aagctccggc taaaatcaaa
    10921 gtaggggtaa tgtcaggccc tgagcatacc gttgcagaac gtgcagcaca gattgcaaaa
    10981 gaaaaatatg gtttagaagt tgagttcgtt ttatttaacg actacgcttt accgaatact
    11041 gcagtaagta aaggtgattt agatgcaaac gcattccaac acaaaccata tttagataaa
    11101 gacagccaat caaaaggttt aaacaactta gtgattgtgg gtaacacctt tgtttatccg
    11161 ttagcgggct actctaaaaa agtgaaaaat gtgtctgagt tagcagaagg tgcggtaatt
    11221 gcagtaccaa atgatccttc aaacttagct cgtgctttga ttttattaga aaaacagggg
    11281 ttaattaaat taaaagataa taccaattta ttctcaactt cagtggatat tatcgaaaat
    11341 ccgaaaaact taaaaattaa agaagtggat acttcaattg ccgcaaaagc gttagatgac
    11401 gtagatttag cggtggtaaa taacacttat gccgggcagg taggcttaaa tacccaagat
    11461 cacggtgtat ttgttgagtc taaagattca ccgtatgtga atattattgt ggctcgccaa
    11521 gacaataaag atgcagctaa tgtacaaaac tttattaaat cttaccaaac cgaagaagtg
    11581 taccaagaag cacaaaaaca ctttaaagat ggtgtagtaa aaggttggta atttagctga
    11641 tttttactta aatggcgatt aagcgctagg ttaatcgcca ttttcatctt taaaatatag
    11701 gaaggagcaa acaatgaact ttaaaaaatt attaggtgtg gcgttagtat ctgccttagc
    11761 acttactgcg tgtaaagatg aaaaagcaca agcacctgct acaacagcta aaactgaaaa
    11821 caaagcccca ttaaaagtgg gtgtgatgac cggccctgaa gcccaaatga ccgaagtggt
    11881 agtgaaaatt gcaaaagaga aatatggctt agatgtagag ttagtgcagt ttactgaata
    11941 cactcaacca aatgccgcac ttcattctaa agatttagat gctaacgcgt tccaaacggt
    12001 gccttattta gagcaagaag tgaaagatcg tggttataaa ttagcgatta tcggcaatac
    12061 gctagtatgg ccaatcgcgg cttattctaa aaaaattaaa aacatttccg agttaaaaga
    12121 cggagcgact gttgcgattc caaacaatgc aagtaatact gctcgtgcgt tattattgct
    12181 tcaagctcac ggtttattga aattaaaaga tccgaaaaat gtgtttgcta ccgaaaacga
    12241 tattatcgaa aacccgaaaa atatcaaaat cgtacaggcg gatacctcac ttttaacccg
    12301 tatgttagat gatgtagaac ttgcggtaat caacaacact tacgcaggtc aagctgggtt
    12361 aagtccggat aaagacggta ttattgtgga atctaaagat tcaccgtatg tgaatttagt
    12421 ggtaagtcgt gaagataata aagatgaccc acgcttacaa acttttgtga agtcattcca
    12481 aaccgaagaa gtattccaag aagcgttaaa attatttaac ggtggtgtgg tgaaaggttg
    12541 gtaatcagtt ggacggcata ttctgccgtc cttttcttaa aaggagaaac agataatgaa
    12601 aataatgaaa ttagccggtg cagttgcaat tttctcgctt tttttaaccg cttgtaatga
    12661 taaagccgaa aagttgaaag tcggtgtgat ttccggccct gaacataagg taatggaagt
    12721 ggcggcaaaa attgcaaagg aaaaatataa ccgtgatgtt gaattagtgg tatttaccga
    12781 ttatgccacg cctaatgcag ctttagataa aggcgatctt gatttgaatg ctttccagca
    12841 taaaccttat ttagataacc aaattcagga aaaaggctat aaattagtgc cggtcggcaa
    12901 tacttttgtt tatccgattg cggcttattc caaaaaaatt aaatcgctgg cagagttgaa
    12961 agatggtgat actattgcag tgcctaatga tccgactaat ttagcccgtg ctttaatttt
    13021 attggaaaaa caaggtttaa ttaagctgcg agcagatgca ggcttaaaag caaccagtgt
    13081 ggatattatt gaaaaccctc gtaaattggt gatccaagaa attgaagcac cattattgcc
    13141 tcgaacgttg gacgatgttg ccttttcgat tattaatact acctacgcag ggcaaaacgg
    13201 tttaacgcca accaaagacg gaatattcgt tgaagacaag gattcgcctt atgtgaattt
    13261 aattgttgcc cgtgaaaata accaacattc tgaagccgta aaagatttgg tgaaagccta
    13321 ccaaacagaa gaggtgtata acaaagcgaa tgaagagttt aaaggggcga tgataaaagg
    13381 ctggtaattg aagataaata aggcatagat tcctatgcct tacttttttg ttacagacct
    13441 gctccggctc ttaatgcttc ggctttgtca gttttttccc aaggaaaatg tttacgaccg
    13501 aagtgtccgt aggcagcggt ttcacggtag attggtttga ttaaatctaa cattttgatt
    13561 aagccatacg ggcgtaagtc aaagttttgg tagattaatt tcacaagtat ttcgttgctc
    13621 actttacctg tgccgaaggt ttcgaccata attgatgttg gggcagccac cccgatagca
    13681 taagaaagtt ggatctcaca gcgatcggct aagcctgcgg caacgatatt ttttgcgaca
    13741 taacgagcag cataagcagc agagcgatcc acttttgacg ggtctttacc agagaatgca
    13801 ccaccaccgt ggcgagccgc accaccgtag gtatctacaa tgattttacg cccggttaaa
    13861 ccacagtcac ccattggacc gccaatcaca aaacgaccgg ttgggttgat gaaatatttg
    13921 gtgttttggc tgagccattc gcttggtagt accggtttga tgatctcttc catcacccct
    13981 tcaattaact ctttttgcga aatatgctct gcgtgttgtg tagaaagcac tacggcatca
    14041 atgccgataa ttttattgtt ctcataagca aatgttaatt ggcttttagc gtcagggcgt
    14101 aaccagtcga gtttgcccga tttacgcact tttgactgct gttccattaa gcggtgtgcg
    14161 taagtaattg gagccggcat taacacctcg gtttcattgg tagcgtagcc aaacataatc
    14221 ccttggtcgc ccgcaccttg ctctaacgga tcggcacggt caacgccctg gttgatgtcc
    14281 ggagattgtt taccaatcgc atttaatacc gcacaagagt gagcatcaaa gcccatatca
    14341 gagtgagtat agccgatgtc gcaaatcact tggcgggtta agttttcaat atccacccac
    14401 gcagaggtag tgatttcgcc ccctactaat gccataccgg ttttcacata agtttcacaa
    14461 gcaacgcgtg ctttagggtc ttgttttaaa atttcatcta ataccgcgtc tgaaatttgg
    14521 tctgcgattt tatccggatg cccttctgaa accgattcag aagtaaataa attaattgcc
    14581 atttgtattc ctctctatct taaatatgga ttattaatag taggggcggg tccagtgccc
    14641 gcccataaat tatataaaat gtttggacag gcacaggacc ggtccctata aaatttgttt
    14701 ggaagtgttt ccgtctagac gtctataata tattttttga acgttttagg caaatagaat
    14761 ttgtttattt ggctaaatat gcccttaaac cagccaacgc atttttggca tcttctaccc
    14821 ctaaatcgta cattgcttgt attttattta catccgtttc aaggcgactg attttgactg
    14881 ttctgcttgg acgaatcaca aaaatctgtt gtttttcatt gagttgaata atctgctcaa
    14941 cggcttgatt atattccgca tagcggtttt cccagcgttg cactaatttc ggatattttt
    15001 tataaaaacg tttaaacagc cacatcgagc ttggtttctt acggtattca agtgggcgag
    15061 taagcaccac gataattttg tcatatccca tttcaataaa tttctgcacc ggaatactgt
    15121 ctgacacacc accgtctaaa tattttttac cctcaatttc gactattttg gatacaatcg
    15181 gcattgagga agtagctcga aaggcttcca tttgctcgaa catattgtca attttgatgt
    15241 attcgggctc accggtttcg acattggtta cagtaaccca aaagtccata ccggaatcct
    15301 caaaggcttg ttggtcaaac ggctccagtt tggaagggag ttcatagtaa gcaaaatccc
    15361 gattaacgat attgccggtg gtaagcaagc tgtgtaaccc catataccgc ttatctttag
    15421 cgtatttttt gttgtatcgc aacgccctac ctttttgttt tgaaggcaaa ttcacgccaa
    15481 ataacgcacc ggctgaaaca ccgattgctc catctatatg aatatgttca tctaaaaata
    15541 catccaacac gccggcagta aaaatacctc gcaaaccacc gccttccagc actaatccaa
    15601 ctttcatatc attctccctg taatttgtgt attataaccc gaattatctt gctaggagaa
    15661 atcacaatgg ctgatgcaga atttatggat ttcctgttag atcaactaag cccgatttcc
    15721 ggtttgcgtt cgaaaaaaat gtttggtgaa tattgcttgt tttttgataa taaaattgtc
    15781 gctattatca gcaaagatta tcgcattttt gtcaaagcta atccgcaaac cttgccgtta
    15841 ttcttagctg aaaatgccga acaatttcac tattttgcta aaggaaaagt gcaaaaaatg
    15901 cactactgga gcattccgga attagcgatt gaagaagccg atgaactggt caaatggatt
    15961 cggctaggct tacaagcggt gtaatttagc gaaaattttg taaaaaaacg ctaaaatatg
    16021 cccgcttgtt agggggggga cctaatattt ctatacttta agattttata tttatgaacc
    16081 aaaaaaaatt agtttctttg attgtcgtta ttgtgttggc aatcatttct caaattttta
    16141 gcttttttga taaaaaagag ccttcaaaag cacaagaaaa atcgacccag agtagtcagt
    16201 ctcatcaagt ttcaacttca tcactaggga actatgatgt gcagatgaaa aacgaccgtt
    16261 tgaaacagca tattgtagat accgattatt acaccttagc gttgtcgtgg tcgccggcgt
    16321 tttgccaaaa acaaaagcga aataatcacg gtaaaattcc gtctcatttg gaatatcaat
    16381 gtggtggctc agcggatttt ggttgggtta ttcacggctt atggccgcaa agtggcaagg
    16441 caagaagtgt tgatgaacac cctcgttatt gccaaggcga tttgccgatg gtggcagagc
    16501 agacgattaa gcaatattta cctgaatcgc cgggggcaac tttgttgcaa ggcgaatggg
    16561 aaaaacacgg tgcttgtgcc tttaaccaag cggatgatta cttcgccaaa caaaaagagc
    16621 tatttaatca gctcaaatta ccggataccg aaatgtctaa attagcactg tttaactgga
    16681 tgcgagccaa taaccctcat ttgcaaaatg tctatttagg gggtagcaaa gatgagctgt
    16741 atatttgcta tgataaggca tttcaaccaa tggattgccc acgctaatgg cagatcttcg
    16801 ccaactgaaa atgcaggttc agcgccaatt aaagcgtgat cttgaacgtg caaatcacta
    16861 ttttaatacc acttttacgc caccaagtat tagctatgcg gtgcgtggcg taaaagccgg
    16921 tgtggcttat cttgaacgca acgaagtacg gtttaatcct gtgttattgc aagaaaatga
    16981 acaggcattt atccgccaag ttgtgccgca cgaactggct catatcttgg tttatcaaca
    17041 ttttgggcgg gtacaatctc atggtaaaga gtggaaaatg atgatggaaa ccgtactggg
    17101 tgtgccggcg gaaatttacc attgttttga tacccaaagt gtgcaacagc aatttagtta
    17161 ccaatgtgcc tgccagactc accagctttc gattcgccga cacaatgccg tgatgcgaga
    17221 taaaaaaagc tatatttgcc gtttatgtaa aactcaactc cattttgtag aaaaaagtta
    17281 atgtggagaa aagttaagag aatgttacga tttagctaga cattcctgtt taaacgccta
    17341 caatttgccg tagtttttat ttttaatttt atttccggag tatttatgga aacaattgta
    17401 attgtaggtg gcggtgcagg cggtttggag cttgcaacct atctaggcaa caaattaggg
    17461 cgtaaacaaa aggcaaaagt ggtgctaatt gaccgcaatg caacgcattt atggaaacca
    17521 ctgttgcacg aggtggcaac cggtactatt gatgagggaa ctgatgcgtt aagctatcgg
    17581 gctcacgcta aaaatcatag ttttgaattt cagcaaggta cgctggtggc ggtagataga
    17641 gagaagaaaa cggtttcact cgccccgatt tataatgatc aaaaccaact tctcgttaaa
    17701 gaacgccata tcagttatga caaattagtg atcgcgatcg gcagtaaatc caatgatttt
    17761 ggcaccaaag gggttgcaga aaattgcatt ttcttagatg gctcagagca agcaaaagat
    17821 ttccaaaaac gaatgatgga gctgttttta cgtttttcac atagtgaaaa taaagatgta
    17881 aaaattgcga ttgtgggggg gggagcaaca ggtattgagc tttcagcgga gctttaccac
    17941 gtggtgaaaa atttaaattc ttacggcttt ggtaaattaa accgtgccag cttgaaagtc
    18001 actttaattg aggcaggccc tcgtttgatt ccggcattac cggagaaagt gtcggtttct
    18061 gctttccacg aactgaaaaa agccggtgtt tcggtgcgtt taggcacgat gattaccgag
    18121 gctcgcccag acggattaat gacccgctta ggtgagaaaa ttgaggcgga tattatggtt
    18181 tgggctgccg gagtaaaagc acccgaaatc acccgtgaat ttggttttga aactaaccgc
    18241 ttgaaccaaa ttgagattaa agatacgtta caaaccaccg ttgatgattc ggtatttgtc
    18301 attggtgatt gtgcatcgtt aatccaagat ggcaaaccaa ttccaccaag agcgcaagcg
    18361 gctcaccaaa tggcaacccg ttgtggtaaa aatattgtgg cgctgattga tgggaaggaa
    18421 atgaaaccgt ttcgatttaa agataaaggc tcgttgcttt cattctcaaa attcggcacg
    18481 gtgggcaacc taatggggaa tttagtgagc ggtgatatgt ttattgaggg taaaattgcg
    18541 cgattggcgt atctctcgct ttatcgaatg caccaagtgg cattacacgg ctgtgtcaaa
    18601 accggcttga ttgtgttggt agggcaaatt aaccgtttct taagaccaac aatgaaacta
    18661 cattaaacaa aaatccgcat caaatgatgc ggatttttta tggcaaaata acaagcggtt
    18721 attttcttgc ctatttttgc aaatactcac gcctagtttg ctaatttaat ttccgccaac
    18781 catttatcaa ttaagcgttt gccctcttcg ctggaacctg ctttttggta atcaatttcc
    18841 acaaagtcta acgcatcggc tttggttgat tgtggagcaa cttcggcgtt gatgtttgtt
    18901 ggggtttggt aaacaccgtg ttttttccaa ggaatttcct gtgcttcttt tgaaagcacc
    18961 caatccataa agagtttggc gttatctaaa ttacgggcat ttttgataat gctgacaccg
    19021 cctaacgcat agcccacttt accttccgga ataatggctt caataggcgc acctttttct
    19081 ttttcagtgg cataactatg tacaaagcct accgtaaccg cactttcacc acgagcaaga
    19141 ttgctggtga ctagggtgct tttcacatat tgcgagacgt tattgttgag ttttttcaga
    19201 taatcaaagg ttttctcttc gccccataag gttgaaagag tggtcataaa cgtataagtc
    19261 gtgccggagc tatgaggatc aggcagttgt acttcacctt ttaagcgagg atctgataaa
    19321 tcttcccatt ttttcggtgc ctcaatgcct agtttggcga gtttttcggt attcacgcct
    19381 aaccctaata caagcatata aacgatagag gtaaatttac cttgttcact ttcaactaag
    19441 gatttaaatt gtggcagaat ttcagcttgt tttggtgaac ggtaggcttc cagtaagcct
    19501 aattcgcctg cttgaaagtg aggttcaatc gtgccgccat accaaatatc tgcctgaggg
    19561 ttcgatgctt ccgcttttac ttttccgaaa attgtaccgg ttccgccgtg aatgaattta
    19621 gtttcgacat tatatttgtg tgaaaattgc ttggtcattt cttcacaaac attattttgt
    19681 accgagcaat aaacagttaa acgaccttct gcttgtgctg cttgagctga taagaaaatg
    19741 ccagaggcga ttaagatcga ttttaatgag attaatttga gtacgttcat cactttcctg
    19801 aaaacataaa ataaaaggta gtgaagtcta gcatttcaaa gcgctggttg aaaatagtta
    19861 atcgcaatga agtagggcaa ttgtgcctat tactttaata tttaccaact atttgcaagt
    19921 tttagcaaaa aataaccgct tgtagtagct cttgctattt tgtcaaaatt cagaataata
    19981 aatgccttta gtctaatgtt aaattttagt tatggaaaat agttggaaat atgcttttaa
    20041 attaaccacg ccgattttta tgggctattt tgcggcaggg gttgcttacg gaatgcttgc
    20101 caccaatgcc ggaatgcctg cgtggtttac gattgtaatg agttttaccg tggtatcggg
    20161 gacggcacaa tatgcagcga ttccattttt tgtctccggt gttggggcgg tgtcggtctt
    20221 tctcagtacg cttttaatga gcctacgttt tagtttttac accttaaata tgatggagca
    20281 taagccgata tccaaagcga aaagtctggt cgctattgca ggtttaactg atgaaggctt
    20341 tgcggttatc ttcattaccg aaagagcaaa agcaagcatc attctttaaa atcgctgtgc
    20401 tatgtgtggc ttattggaca ttttccacga ttgtcggtgt gttgttaggc gattcagtgg
    20461 cgaactatat tccgcatttg gattttgctc tgccttgttt gtttgcaatt ttagcctatg
    20521 agcaatacaa aaaccaaaaa caatggaaac cgattgtgat tgcgttaatc ggatttttac
    20581 ttgctcgtca gattaccgaa accagcgtgt tattggtggc aattttagta gcgattgtca
    20641 ttgtggcttt attacctcaa tcttcttcaa tcaaactaga gaaaggagta gaaaatgagc
    20701 acaaatgata ttttgataat gtttgcagca ttagtgctcg gctcgcaaat ttgtcgtttt
    20761 ttgccggaat ttttaccgaa aaaggtgtta tcttcgccca ttttgcaaaa attaaacaaa
    20821 atgttaccgc ttgtgattat gcttttattg cttttaacga gcctaaactt tcctaaaaac
    20881 ggggaaggct ttaacttaat attggcacaa attctggctt taataggcgt attaggtagc
    20941 tatgtttggc ttaaaaatac cgttttaagc gtagcgttgg ggattttcgg tgtgaatgta
    21001 tttttatccc tgttaggata aataccaaag gtcattttat aggagcgaaa caccttcgct
    21061 caatcattaa cagatgtggg gcgaaaaatt tttcgcccct tatttatcac aagcggtctt
    21121 tttctttcaa ttttttgcaa attaaatcgc taaatcaaac gcatagaagg caactaaaat
    21181 aatcgcaatg attactgtac ctaggtttaa tttattggct tcgcctgaaa ttaagcgacc
    21241 aatcacaagg gtggcgaaac ctagcataat gcctgtcaca atgttggcgg ttaatacgat
    21301 gaacaccgca cagactaaac ctgacattgc acctacaaaa tcgctgaaat ctaatttaga
    21361 gacattactt agcattaata agcccacata cattaatgcc ggtgcggtgg catagcttgg
    21421 tactaagaat gcaagaggtt ggaagaacag cataaataag aaaccgatac caaccactac
    21481 agcggttaaa cctgttttac cgccaacggc tgtacctgct gccgattcaa tatacactgc
    21541 cgctggtgct gtaccaaata agcccgataa aattgagccg aatgagtcag aagttagggc
    21601 tttatcgcca ttgataattt gtccgtcttt atctaataaa ccggcttgcc ctgcaaccgc
    21661 acggatagta cctgttgcat caaaaatagc ggtcattact aacgcaaaca ctaccggtaa
    21721 aatggcggta tttaatgctc ccataatatc aagatttagg aattgcgaat tttcaccaaa
    21781 actcggcatt ttgaaaaagc ctgtgtattt tacgttaggg tcaaaaatta aacttacgat
    21841 ggtaatagca ataatgaccc ataaaatact gccttttact ttcagctttt ctaacccgat
    21901 aatggcggct aaaccgatta atgacactaa aaccggaaat gaagtgaagt cccctaattt
    21961 aaccggaata tccataccgc tattgaccac taatttaacg ttagtggcgg caataatcag
    22021 taagaataaa ccaataccaa ttccagcacc gtgggcaatg ctgcttggca aattacgtaa
    22081 aatccaagta cgaataccgg tagcagaaat caaggtaaat actacgccca ttaagaaaat
    22141 cgccccgagt gcaacaggaa tagaaacttg ttgccctaat actaagctaa aggcagtaaa
    22201 agcagtaagt gaaatcgcac aaccgattgc cattggggca tttgcccata aaccgattaa
    22261 gatagagccg agacctgaaa ctaaacaggt ggcaataaat accgattcgg caggaaagcc
    22321 tgcttggctt agcattcccg gcacaacgat gacggaataa accatggcta aaaaggtagt
    22381 taaaccggcg atgatttctt gacgagcgtt tgaaccacgc tcctcaaatt taaataacga
    22441 cataagaacc tcaaaagaag aaaatgaaag gggaaatttt aggatgcgga attttacaga
    22501 aatttaaaat aattagcaaa cgtttgcgta agaagtgaaa gaaaagcagg aataaatcct
    22561 gcttttgttt gatggttagt aatcgatgaa agcgtcttga tctgcccctt ccttttcaac
    22621 tttaggctga accatatgtt cacgttttag cccaagttgt agtgccacac caattgcaat
    22681 gtagatggat gaataagtac cgaaaccgat accgatcaat aatgcaagtg agaaactatg
    22741 aagcgttgga ccacctagat agaataaggc tagtaccaca aagagggtgg ttactgatgt
    22801 cattaaagta cgcgaaagtg tttggctcaa ggaaatatcg ataatttcaa ttgagctgga
    22861 gcgacgaact ttagaaaagt tttcacgtac acggtcaaac accacaattg agtcatttaa
    22921 cgagtaaccg acaacagata aaatcgctgc tacaaaggtc aagtcaattt caatctgtaa
    22981 gaaagagaag attccgatcg tcactaatac atcgtgaaat aaagccacaa taccgcctac
    23041 cgctaaacgc cactcaaaac gtgttcccac gtaaataagt agcatagcaa gtgttgccaa
    23101 agtggcataa atagcccctt gggttagctc ttcccccacg tttgggccaa cgaactcaat
    23161 gctcttgata gtcgcattcg gatctaattt ttgatggatc atctccatca ctttattccc
    23221 aacagacata ttaccggcac tggcggcaag tcggatcatt aaatcttttt gactgcctgt
    23281 ggtttgcact aaggcattgc cgtagccgct attttcaagc tccgtacgca gttttgctaa
    23341 atcagcaggt tgtgaaaatt gagtttcgat tactgtcccg ccggtaaaat ctaaccccca
    23401 gttaaagcct tttgtcgcaa tagtaaaaat gcataaagca gttacaatca gcgaaaaaat
    23461 gaatccgaca tagcggtatt tcataaaggg gattaattta taaggcagtt taatttctgc
    23521 tacatcttgt tgtacatttt caatagccat ttttccacct taaatccaaa gtttcttcac
    23581 gcgtttgcca ccgtaaaccc agtttacaag cattcgagta cctgtaattg cggtaaacat
    23641 agaaataatt acccctaatg caagcgttac cgcaaagcct tttaccggac ctgtacctac
    23701 accataaagc acaagagaag ttaaaattgt ggtgaggtta gagtcaaaaa tacttgagaa
    23761 tgcgccatta taaccttcgt ggattgcttg ttgaattggg cgaccgttac gaatctcttc
    23821 tttgatccgc tcgtagatta gtacgttggc atcaactgac atacccacag caagtacgat
    23881 accggcaatt cccggcatag taagggttgc accgattaat gacattaaac caatcgttaa
    23941 gatcatattc acaatcaagg caagagaggc aaatatacca aatactttat aaaaagctag
    24001 acagaacagg atcgttaagc ctaagcctaa aatactagct tccatacctt gtttaacatt
    24061 atctgcccca agagaagcac cgatagtacg ctcttccaca atcacgattg gagcaatcaa
    24121 cgcacctgaa cgtaataata ccgcaaggtt ttgagcttcc gctggtgaat taatccctgt
    24181 aatctggaat tgattaccta aacgggtttg aatggttgca acgttaatta cctcttggtg
    24241 tttttctaaa atgactttac cgttagcatc tttacgacct gaatctttaa attcggtata
    24301 aagtgttgcc atcggttttt ggattgccat tttagtaatt tcacccatca tctcgccgcc
    24361 ttcggtatcg agtcggatac tcacttgcgg caagccacgc tcatcagtgc ctgaggttgc
    24421 atcaataata tgttcacccc ctaacgaagg tttacggcgt aatacaactg gctcgccatc
    24481 acgggtgttt tgcagttctg aatcagccgg cacaatgcct ttcgccgcag aggccacatt
    24541 ggcttcggta ttgactaacc ggaactcaag ggttgcagtt gcccctaaaa gctctttggc
    24601 acgagcggta tcttgcacac ccggtaattc aactacgata cgatctgcac cttgacgctg
    24661 aatggtcggc tcagaaacgc ccaattcctc aacacgttta cgcaaaatag aaaggttttg
    24721 ttcgattgcc atcgtgcgag attcagaaag agcttgtgct gatggcgtta aggtgacttt
    24781 attatcattt accaaaatat caagcgttgg gtgagagaga cgcactaaac gcactgcttt
    24841 ttcggcggta tcgttatcgg caaattcaac ctcagttgca aaattttcgc cttttttgac
    24901 cgcttgatat tgcaattttt ctttacggaa atcactacgc aggctgtctt gcaaagtgtc
    24961 ttgttgtttt gcaagcgccg tgttcatatc cacttccatt aagaaacgaa caccgccaag
    25021 caagtccaag cctcgcttca tcgggctacc gccaatgtca gacaaccact gtggcgttgc
    25081 tggtgcaagg tttaaggcaa cagagtagtt attccccaat gcttctgaga ttttttcttt
    25141 ggcaggcaat tgctgttcgc tgctttcgag acgaaccaaa atcgagccat tttctaacac
    25201 ggcagatttc ggctgaatat tcattgctga aagtgtggat tgcacttgag acagtgtctc
    25261 aggtgtggct tgttgcccac gagtaccgga aatttgtacc gaaggatcat cgccatataa
    25321 atttggaagg gcatataaag caccaatggc gatcacgaag atcaccatta aattcttcca
    25381 tagagggaaa cggtttaaca caataactcc ccgaatgtta aagttggata agagggttga
    25441 ttaaagtgat tttaatgaac cttttggtaa caccgcaaca acgaaatcac gtttgatggt
    25501 cacttcagtt gtgtcattta atgcaatcac gatgttatcg ttatcagcgg tcactttggt
    25561 aattttaccg attaaaccac cgctggttaa tacttcatcg ccttttgtca agcttgccag
    25621 taaatcacgt tgttgttttt ggcgttttgc ctgaggacga taaatcataa aatagaaaat
    25681 tgcaccgaaa ataatcagga taaagatcat ttccattccg ccaccttgtt gcataaaaac
    25741 tccttaaatg tttgagtggt ataaaaataa gtgttataaa aaacgcctgt taaaatacca
    25801 taaattcaat gaattaacga gtagaaaaat tcatcgaacg cttttctttt aaacaaaaat
    25861 ttgagtagaa tcagcacttt tagtttagga ttaggttctt ggcgtgttct tgcgctgaca
    25921 caataggaga aaaaatgaaa aaattattcg ctcaagcggt tatttttggg gctttttttg
    25981 caagttccgc ttttgctcac aatgtgcaat taaatcaagc attacctgct gtttcggttg
    26041 caaaagacgg ggaattggca gtggcaggtg gaaaggttag ctataaaaat tggcattcat
    26101 catctctggc aggtaaagtc cgtgttattc atcattttgc cggtagaagt tcggtgaaag
    26161 aaaaaaatga agatttgatg acagcaatta aaaatgccgg ttttgatcgc tcgaaatacc
    26221 aaacggtgac gattgtaaat gctgatgatg cgattgtcgg cacaggggta tttgtgaaaa
    26281 atagtgtgga aaacggcaaa cttgacaatc ctcacagcca agtagtgtta gaccagcaag
    26341 gcagtgtgaa aaaagcgtgg ggcttaaaag agaaagagag ctttattgca gtgctggata
    26401 aatcgggtaa ggtacaattt acctctgagg gcaaactctc tgcaaaacag attcaagaag
    26461 tgattgggtt ggtgaaaaca ttaacgcaat aaccagtgtt tttatgggcg gattttgtat
    26521 ccgcccatca ttctagataa taaatcgata acttatcgtg tgatgatact cttctcctgc
    26581 ttttgttatc ccgccaaatt ggagtaattc aggctggttt agtgaatttg ggaaaaactc
    26641 aggctctaat gctacaccag cgtaatcttc atattcgcct ttagtcaaat taggttgtcc
    26701 ttttagccag ttgccggtgt aaagttgtaa tgctggcatg gaggtgcgga gttccatttt
    26761 taagtcttcc acggctaaac aagcggtcgg attttcacta ttttttgcaa gatgaaagga
    26821 gtgatcgtaa ccttttaccg ctttttggtc gtcatcagcc aataaatctt gcccaatttt
    26881 tttagcattg cggaagtcaa aactggtact ctccactttt ttcagtggag cattaggaat
    26941 accgctggca tcaaccggta agtatccgtc tgcattaatt atcagctcgt gatctaaaat
    27001 cgtctctgaa ccttgcaaat taaaataggc gtgattagtt aagcaaagcg gtgtatcttg
    27061 gttagcaacg gcatcaaagc tgatttgaag ctcattctct gttaagcgat actccacaaa
    27121 agctttcact tcgccgccaa atccttcctc gccatctgca aaaaaataac taaatttgac
    27181 cgcttgttcg ctttggcttt caagttgcca cactatttta tctgccccaa gctcgccacc
    27241 gtggagatta tgttcaccgt tatttttagc gagctggtag gttttgccgt ttaagcgata
    27301 ttcggcattg gcaatgcggt tagcgtaacg cccaatggtc gctccaaaga aagcggtctg
    27361 tttttgccaa ttttttgcag acgtggtgac taatacttcc cgttcctcgt tcggcatttt
    27421 gacaatgcac gaaagccaag aagccccaac atcagaaagg gtaatgcgta aaaacgcatt
    27481 ttcaagggtg aataatttca tcggttgacc ttaattacct agcacggcat agccgtacta
    27541 ggttaagcat aattcagccc tgctagggct gaggttattt attttagagt agcggagcta
    27601 cttccttatg cttaacccgg tacgctttag cgtgccgggc attctcgcac cccatcggag
    27661 gcagtacaaa cgtggaaggt ttctttaatg ccggtttgct tttcgtaatt gttagcaacg
    27721 gcttggcgga gatcttccac tttgtcattt ggcactaggc acacgacaca accgccaaag
    27781 ccgccgccag tcattctggc tccgccgttt ttaccgatag cttgttgggc gatttcggct
    27841 aagcaatcca cttcagggca ggtgatttca aaatcatcac gcattgagtc gtgagattga
    27901 gccatcaact ccccgagttt gaccatatca ttcgctttta aggcctctac tgcttccaga
    27961 actcgttgat tttcgctgat gatatgtttt gctcgtttat acgccagctc attctcttca
    28021 ctaagttctg aggctcgttc aataaattgt tccgctgtga catcacgcaa ttttgctttg
    28081 ccgaagaagt gggcggcaaa ttcgcactgt tcacggcgac tgttgtattc gccggtaacc
    28141 aagtcgtgtt ttacgttgga gttaataatc gcaatcgaat agccttgtgg cacaggggtt
    28201 ggggtgattt ctaaactacg gcagtcgatc atcactaaat gatcttgttg cccgagagcg
    28261 gaggtgagct gatccatatt gccgcagttg cagccgacaa atttattctc agcctcttgc
    28321 ccgattaatg cgatttgcgg taaagaaagc ggtaaatcgc cgagtaattg agcggtttta
    28381 ccaatcgaca cttccaatgc ggcggaagaa cttaaacctg atgacatcgg cacatcgctg
    28441 gtaatggcta aatctgctcc ttgtttgaat tcggggtgtt tggcttgaat aaatttcact
    28501 acgccacgca cataattcgc ccatttttgc tcgcttggct caatcgcctg gcttaaatca
    28561 aattcatctt gttggttgag atcaatggcg aacacccgcc atttgttgtc actacgtttg
    28621 gcaaagctaa ccgctgtgcc gtaattgatg gcacaaggca ttacaaaccc atcgttgtaa
    28681 tcagtatgtt cgccgataat attcactctg cccggggcaa ataccgtgcg ttctgcttta
    28741 taaccaaaat gttgttcaaa ttgttgcaaa gcgatttctt gtggtttcat ttcaattcct
    28801 tatttatctt tatagtgttt ggtatcactt actgcattta aacgttcggc agcttgttcc
    28861 ggggttaaat cacgttggct ttctgccatc atttcataac cgaccataaa tttacgcact
    28921 gttgccgaac gcaagagcgg cggatagaag tgagcgtgta attgccagtg agcattttcc
    28981 ttgccgttaa acggagcgaa gtgaaagccc attgaataag gaaagctgat gttaaacaga
    29041 ttgtcgtaac gggtggtgag ctttttcaat gcaagggcta aatcggcttt ttccgcttcg
    29101 tttaaatcgg taatggattt gaactgcttg gctttcggca acagcaaggt ttcaaacggc
    29161 caagccgccc agtaaggcac aaccgcaatc caatcttcgg tttctgccac aattcgctct
    29221 tgtttgtcta attcacgttg tgcgtagtca agcaacagtg gcgagccata ttgagcaaaa
    29281 tatttcgctt ggcattcgtc ttcaatcgca atttcattag gtagaaaatt acttgcccaa
    29341 atttgcccgt gtgggtgagg gttagaacac cccatcattg agcctttgtt ctcaaaaatt
    29401 tgcacccact gataatgctc tttcagctca ttcgcttgct cttgccaaac tgttaccaca
    29461 tcagtaattt cctcgatgga aagttgcggt aaggttttac tatgatcagg cgaaaaacag
    29521 atcacacggc tttcgccttg tgtatgagaa atctgaaaca gcggatcatc attcggtatt
    29581 ggtgccggtg tgtctggtag cagggcagag aagtcgtttt taaacacaaa cggcttggtg
    29641 taattcgggt tttgttcgcc ggtaatccgc ttattgccgg ggcagaggta acaacttggg
    29701 tcgtagctcg gtttttcatc ttgcacgatt tcttcttgtt gcccttgcca cgggcgtttt
    29761 gcccgatgcg gagagactaa aatccattga ttttttaatg gattaaaacg acgatgtggg
    29821 tgatcgttga ggacaaattc gctcatataa aactcctcga aattagttat gtaaagagta
    29881 tagcgaaagt cagacaaaat gactgtgaca tagctcacaa aataatgatg tcaagcggtc
    29941 aaatttcaga aaaattttgc aagttttcct ccattttgcg atttaaggta gcttacgtgg
    30001 aattgaatgt ggcttttggt agaatagatg aatatgcaag atattaagac aaaaatagat
    30061 ggaaagactg aataaatttg atgcttggtt aatgaatcat aaacctaatg ctaggttaag
    30121 cggagcgagt cgtttgttga cagagttttg gttctttggg ttaaaagaag ctagagcctg
    30181 tttatttgcg ggattatttt ttattgcgat gttttcggta ccaaaaacgg gattatgggg
    30241 cttacctcgt tatgatattt tgctgatttt tgccatagtg gtgcaaattg caatggtgaa
    30301 actggggctg gaaacgtggg atgagctaaa agcaataagc ctatttcatt tggttggttt
    30361 tgtgttagaa gtctttaaaa catcgagtaa tattcaatct tgggcatatc cggattttgc
    30421 ctatactaaa ttgttcaatg tgccattatt tactggtttt atgtatgcag cagttggttc
    30481 ttacattatc caagcgtggc ggttgtttga tttgaaaatt aaaagccacc tgccctattg
    30541 gttagccact ttaacggcac tgatgattta cctgaatttc tttacgcatc attacattgg
    30601 ggattaccgt tggtatattg ccgcttttgc attagggctg tatgcacgta cttttgtatt
    30661 tttcacccct tatgacatta cacgaaaaat gccactgctg ctttctttct tcctgatagg
    30721 ttttttcatt tggttggcgg aaaatatcgg tacgtttgcc ggaatttggc gctacccgaa
    30781 tcagtttggg gcttggtcta tggtgcatat gagcaagtgg agtgcttggg cgttattggt
    30841 gatgatgact tttaccatca ttgtgcattt aaagcatatc aagcaaacag tcagagtctc
    30901 gagcgattaa caagctgtgg gttttggcga aaattttact catcagttat tttcagtgga
    30961 attaggggca aataataatt tgcccctata tcaaattatg gattttcccc ttccacatca
    31021 ataatcatca cttccgactg tgagcctaac cgcatcggca cgccccagaa tccgtagccg
    31081 gaggtgacaa aataatgccc gaagccgatt ttttcatagc cgtaatgtaa tcgatagatc
    31141 agtttggtaa taatacttgc agggaacact tgccctttgt gagcgtgtcc tgaaacttga
    31201 atatcaatcg gcaatttagc atgttgctca atttcagtcg ggcggtggtc aagcaaaatt
    31261 accggtagtt tagtgttcac gttttgtaaa agctgttcgg cagaaggacg atttttgact
    31321 aaatcatcat tacgcccaat aagggtaaat tttccgttaa tttcggccgt ttgatcccat
    31381 aaaacagtaa taccggcgtc ggtaatttct tttgcaatcg tttcttgagc cccaaaaaag
    31441 tcgtgattgc caagggtagc atacacgcca agaggagctt ttaatttggc taaatgaggc
    31501 tgcattttat cggcaacata aacttcggta ttgtcgtcca taatatcgcc cggcaataaa
    31561 atcagatcga ctttttgctg gttgaaaatc tctgccagtt ggtcaagttg cttggttccg
    31621 aacagttttc ctaaatgcag atcgcttgcc ataccaatgc gaagcggttt ctctaatggt
    31681 ttatccaatt tcaccgaata atgtactact gttggggtat aagcgttgta atagccaagc
    31741 ccaagtaagc caaagaatgc aaatgggtag gcgattttca gccagcgatt gacggtagta
    31801 ttgccgttga atattttgta aatacaagcg gtgaaaaaac tgataaaaaa tgcaaaaagt
    31861 aacaatacca atatgaatgc cattattcta aatagcgcaa aagtacgagt aagatgcaaa
    31921 atcactaatc cgtttgcgac taagaaagtg agaataccaa ctgttttacg gtttttactt
    31981 gataaattaa ataaccagct gacagtcttt gcaaagttga ataaaaagag ttgtaacacc
    32041 gcaatcacaa gggcggtggt aatgtagtaa cgatattcca tatttttcct tcaataaatt
    32101 ggctaaaccc agccgatttg tcttaataaa aataagccga tgctggcact aaacattgag
    32161 ccgagagtcg taatgccgat cagatttgcg gctgcctcgc cgtctccgcc atagttgcgt
    32221 gtcattgcgt aggtggctga agcaacggga gcagaagcag ccacaaagac aatgcctagt
    32281 tccatcggcg gaagttgaaa cacaaatttc ccgagtagta gcaagaaaat tggagcaaaa
    32341 atcagccgaa tcgaggcaga aaacagcaca attttattga tggtgctttc cactccttga
    32401 ttaaattgtt tcaactgttt gaaattaatg cttgctccgg tgcagataag tgctaatggt
    32461 agtgtcaggc tcgccattaa tttaccagca gactcaagcg gggttggaat ttggtggctt
    32521 aattcaaaat agttaaaagt taagcctgca atgacggcta gaatcagcgg atttctcaat
    32581 atcgacaata ttaatctgcc aaaattcact tttttctcgc ttaacgatga agtgagggta
    32641 atcactgcaa gcacattaaa ggtaatcacc aagcacgaaa tataaactga agcggcagcg
    32701 agagctttat cgccataagc attgagaatt aaggcaatgc ctaaaatcgc cgcattggta
    32761 cggaaagtgc cttgagtgaa aatacaacga taacggcggt tttcaatatg tcgagccgcc
    32821 caccattccg cccataaata gatcaaaatc gaaccgccga ctccggtcga gatcaggttg
    32881 atttggctgg agaaatctaa cgggcttttt agcatattca agaaaatcat cggtggcagg
    32941 gtaaaattaa ataccacctt tgatgccata ttgcaaaagg tatcgtcaat aaattttcgt
    33001 ctgcgtggaa aaataccgaa cagcattaac aaaatggttg gtaaggtaac gccaatgcta
    33061 aattggatag agtcgaaaag cataatgttt gccttaaatg atggcacgag tgtcttttgc
    33121 ttgtaccgta gattatcaat aaagtaccag cgtggacgct ggtactatca tcaatggaaa
    33181 tgaaattaca atcctgcctt taagcttgct tcgacaaatt tatccaaatc accgtccagc
    33241 acttgttggg tggtgcgatg ttccacaccg gtacggtggt ctttaatccg tgaatcgtct
    33301 agcacataag agcggatctg gctgccccag ccgatgtcgg atttgttgtc ttccatcgcc
    33361 tgtttttccg catttttctt gctcatttcc agctcatata gcttcgcttt aagctgtttc
    33421 atcgcctgat ctttattttg atgttgtgaa cgaccgttct ggcactgcac cacaatgccg
    33481 ctcggtatat gggtaattcg caccgccgat tcggttttat tgacgtgctg accacccgcc
    33541 cctgaggcac gatacacatc aatccgcaaa tccgcagggt tgatttcaat atcaatatcg
    33601 tcatcgactt ccggataaac gaaagccgcc gagaacgagg tatgacgacc gttattggca
    33661 tcaaacgggc ttttacgcac caagcggtga atacccgttt cggttctgaa ccagccgtaa
    33721 gcatagtcgc cggaaatttt cacggtggcg gatttaatcc ctgccacatc accgtctgag
    33781 gcttccatta gttcggcttt aaaccctttg ctctctgccc aacgcaaata catacgcagt
    33841 aacatttctg tccagtcctg agcttccgtt ccacccgaac cggcttgcaa atccaaatag
    33901 caatcggcac tgtcgtgtgg gccgctgaac atccgcttaa attctaaatc ggcaagtttt
    33961 ttctctaatt cgtctgcttc cacttgggct tcattgaagg tatcctgatc ttctgcttcc
    34021 accgccagct caatcaaccc ttcaacatct tcaatccctt gctctaaggc tttaatcgta
    34081 ttgacgatct gctccaacat tgcccgctct ttaccaagcg cttgtgcttt ttccggcttg
    34141 ttccatacat cgggttgttc cagctcggca ttgacctctt ctaagcgttc gactttatgc
    34201 tcaaagtcaa agataccccc tgatcaccgc ggtgcgctcg cttaaatcag ttagttggtt
    34261 tttaattggg tttaattcaa acattgtcgt tcctgttttt gcttatttta aaaagatgaa
    34321 ttatagctga agttaagcaa gcggtcgaat tttgcaagaa atggagcaat gatcgtttct
    34381 agtaatgaga tttggttcat aaaagttgca actgtttctg ctatttggct ttgatagcta
    34441 aaaatcttta aaaaaacaag cggtcgtttt accacatttt ttgcaaaacg accgtagctt
    34501 cttgctataa tcgctgaaaa aatgctgcaa ggagatttta tggcaaagcg cccaagtgat
    34561 attgatgcaa ccctattgca actggaaatc ctacgccgta tccccaaatt acccgctaaa
    34621 attgatgcta aaagtttgca ccaacagcta ttagatgccg gctttgaacg ggatattcgc
    34681 actgttcagc gttcgctcaa aatgttatgc gagcattttg atattgaatg cgatgagcgg
    34741 agcaaaccct ttggttatag ctggaaaatc cgctcagagg ggctggcatt gccgattctc
    34801 aacgaacaac aatcattact gctaaaactt gccgagcaac agctgaaata tctgttaccc
    34861 gcaaatttaa tggcatcaat gaaacccttt tttgagcagg cagacagaat ggtttccggg
    34921 gcgaaagaca agcccgaata ccaatggcta aataaagttt gctccacgcc aaccagccta
    34981 ccgctgatcc ctgcaaaaat taaagaagag atttttaatt ccgtaagcca agccttattt
    35041 caaaataagt tgttaaagat cgaatatcag aaccagcacg gcaaaaaaca ccaagcgaca
    35101 attatgccgt tggcgatttc acaacaaggt gcgagcattt atttggtctg ccgttacgaa
    35161 gggtttgacg acaaccgcct gttggctctt caccgcattc gtaaagcgga gatttctact
    35221 tttagttttg aacgcccgaa agattttaat ttgcaagcct accaagatgc cggacacctc
    35281 ggttttggca atggcgaaaa agctagcctt accttttcga ttagcagaga cgccggtttc
    35341 catttaaccg aaacaccgct tgccaaagat caaaaaattc tcgaggagag tgaaactcac
    35401 taccgtattc aagccatagt cgctgataat gatatgctaa cctggtggct acgcaaattt
    35461 ggcgaagata tttgggatat cgagaaagaa gcgctaaaat aagctaaaca agcggtcggt
    35521 tttgtgggaa tttttgctaa atagtatcga ccgctcctcc ctaaacagac ctttatcata
    35581 aatacaactc tttcaatcag atattcttac tgtctattga tgaacgattc gaatttttct
    35641 agtggttgaa atttaaacta attttcttgc tttttggcat ttttcagact tttaattctc
    35701 tccattagcc tgttttttta cgctcttttt cataaacagg aataaccaat gccttttcaa
    35761 cttactttct gccaacaagc cggcaatcag caccagaaaa atcaagatgc actgtttaac
    35821 ggcaaagcgg tgtaccaatg gcaacttaaa aatgccgaga gttatctgct ggataacgac
    35881 aaagtaattt ttggggttgc ggacggcgtt tccagccacc ctcgaaatca tcttgcctca
    35941 cattatttaa tggcgttact cagccaatgc caatcccttg atagccaatg gttgcgacag
    36001 gctcacggcg atttttgcga aaaattagcg aaagattatt ttggtgcttc ttgcactttt
    36061 gttgcttgtg aattacacca taacggcaga gggcgtatgg ttaatgtggg cgacagtcga
    36121 gcctataaaa ttacggcaaa cggggagtgg caacaactga gttttgatca caccatactg
    36181 gctgaaatga aacagaaagg cttggttaag gaagggagca actatgcctc aatgtataac
    36241 ggcttaaccg attgtattgt tgccgatttt gacgccgatg atttccgcat tcatatagcc
    36301 gaatttcaac tggaaaaagg cgagagcatt ttgctctgtt ctgacggttt gcacgaacaa
    36361 ctcgccccag aagctattca ggcgatttag gacggatacg aaagcccgtc tcatcgtctg
    36421 caaatttgca gaaaaatggt aaaaatgcac cgcttgtatg acgatttttc tgcggtgatt
    36481 tgtgaaattg tgtaattaaa acgacattat ttgtcgcatt ggtgcttaaa atccgcataa
    36541 aacagaggag aaaaaaatga aaaacgattt ccattatgcc gctgaattaa tccgcaatgc
    36601 agacggcatt ttaattaccg caggggctgg aatgtcggtg gacagtggct tgcccgattt
    36661 ccgtagcgtg ggagggttat ggaattccta cccaccgctc aaaaaattta atttgcaatt
    36721 tatgcagatt gccacaccgc ttgcctatca ggaacgccct gagttggcaa aatggttcta
    36781 tgcccatcgc ctaaatcaat accgccaagc cgaaccgcac caaggctatg ccattctcaa
    36841 acgctgggcg gaaagcaaac aacacggcta tttcgtcttc accagcaatg tggacgggca
    36901 tttccgcaaa gccggttttt cggaggatcg gatttacgaa tgccacggca cgctagacca
    36961 tttgcaatgt ttggcaaatt gcaaaaataa atcgtggtgg gcgtacgact atcaacctgt
    37021 aactgacgat gaacattgcc ttgtattgag cgaaccacca acttgccctg actgcggagg
    37081 attagcccgc caaaatgtac tgatgtttaa tgattggagt tatgccgaag gctaccaact
    37141 tactaaagag acactgttag atgaatggct acgcaaagcc caacgccctg tggtgattga
    37201 aattggtgca ggcaaagtcg taccaactgt gcgtaatttt tccgaacgca ccgccaagca
    37261 gaaaaaaggt ggtttaatcc gcatcaaccc aatagatgcc ggcgtaccca aaatgcactt
    37321 tttaagtttg gaaatggggg gattagaggc gttgcagggg attgaggaat gcttataagc
    37381 ggtctaaatt caccaagact ttgcaaattt tgctacaata aaaacattga aatattgtaa
    37441 taaaggatct gaaatgagcc aaaataatac agaaaaagaa attgcggaaa ttagaaaaat
    37501 tgaagatgtt gtaagaacga aattatctat tcctgattat cagcgccctt ataagtggtc
    37561 ggtaaaacat attacccaat tattaaacga tctctatttt cattttgaaa atggtaagaa
    37621 agtttatcga gtaggttcgg ttgttatcca tacatataca ggtaaagatg agaatagtga
    37681 gtctaaaaca aaattcgata tagttgatgg acaacaacgt ttaattagcc tttctttaat
    37741 tttattttta ttgagcaatg ataacacttt tccactttta tctgaaaagc tctcacatag
    37801 tattagtgcg gataatctta taaaaaataa ggttgcagta gaacaattta ttcgagatag
    37861 agtacaagat aaacaggaat ttgctaccta tattttagaa acttgcgagt ttgtttatat
    37921 tgaattaggg gatattgacg aggctttcca attttttgat gctcaaaatg caagaggaaa
    37981 atcgcttgca ccttacgatc tattaaaagc gtatcattta agagaactta aagcagataa
    38041 agagacgatt tatcaatgtg tagagaattg ggagcaagca gtagaagctg agattgctga
    38101 tttaaaagaa atcatcagtg agacgttatt tagattacgc cgttggcaaa aatatcaaac
    38161 agcagaaaaa ttcacgaata aagaactcga tacattcaaa ggtgctagct cggataaaaa
    38221 ttatctgtag aagatcagac ttgatctgac aattcactct aaaaagtgag agtttcccgt
    38281 ttagaatatg agtgtcaaaa atcaatctaa acaaaaaaga aactctcatg ttttattcta
    38341 acaatcccct
//
LOCUS       DANLUT010000008        37964 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLUT010000008 DANLUT010000000
VERSION     DANLUT010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37964
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            43..546
                     /locus_tag="PXB38_000353"
     CDS             43..546
                     /locus_tag="PXB38_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL5352718.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDISSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYADTLVRSIRFQPNQKSVGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            562..3423
                     /locus_tag="PXB38_000354"
     CDS             562..3423
                     /locus_tag="PXB38_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL5352719.1"
                     /translation="MGNKLTNISTNLKSSWLTAKSGLNRTGQSLAKAGQSLKTGAKKI
                     ILYIPKDYQYDTDKGNGLQDLVKAAEELGIEVQKEESNDIAKAQTSLGTIHNVLGLTE
                     RGIVLSAPQLDKLLQKTKVGQAIGSTENITKGFSNAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNELTLAKAGLELTNSLIENIANSVKTLDAFGDQINQLGSKLQNVKGLSSLGE
                     KLKGLSGFDKTSLGLDIVSGLLSGATAALVLADKNASTSRKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLSFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVVASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNPGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGQHLKAD
                     KLVQLDSAKGIIDVSNTGEAKTQHILFRTPLLTPGTEKRERVQTGKYEYITKLHINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVESGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDIIDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRQGDGNDSIT
                     ESEGNDKLSFSDSNLKDLTFEKVNHHLVITNTKQEKVTIQNWFREAEFAKTIQNYVAT
                     RDDKIEEIIGQNGERITSKQVDELIEKGNGKIAQSELTKVVDNYQLLKYSRDASNSLD
                     KLISSASAFTSSNDSRNVLASPTSMLDPSLSSIQFARAA"
     gene            3498..5624
                     /locus_tag="PXB38_000355"
     CDS             3498..5624
                     /locus_tag="PXB38_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL5352720.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TSWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDDKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGYISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            5636..7072
                     /locus_tag="PXB38_000356"
     CDS             5636..7072
                     /locus_tag="PXB38_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL5352721.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            7267..8058
                     /locus_tag="PXB38_000357"
     CDS             7267..8058
                     /locus_tag="PXB38_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5352722.1"
                     /translation="MSLSITNLSLGYRKNQQTKTILHDVTFNVESGTLTSILGPSGVG
                     KSSLLRVISGLDKPLSGKVALFGEKINQPHPDVGFVFQSATLLPWLSVRNNVAFGLDF
                     QCRLPLSKADIQHRVESALEEVGLREAIDLMPHELSGGMAQRVNLARALARQPKVILL
                     DEPFSALDEVIRSQMQTLLHDIVRHHNAAAIMVTHDIDEALLVSDDVLLLGGDTAHIV
                     GKWHLSAPFPRTDLLSLNPIRVEILHTLRQAQQRAVQEQTVDFVI"
     gene            8069..9235
                     /locus_tag="PXB38_000358"
     CDS             8069..9235
                     /locus_tag="PXB38_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352723.1"
                     /translation="MDQQRRDFMKLLSLFSLAGSLPLIQACEQVQKNAENRPLVIGYL
                     PITDATPLLVAHAKGLFEKHGVQVEKPVMFRSWAQLVEAFLSGNVNVVHLLSPMSLWA
                     KYGANAPVKAVMWNHLAGSALTVRPEINSIAELSGKTVAIPFWYSIHNIVLQRLLREN
                     GLKITEKEPNSGEVRLSVMAPSDMVAALASEAISGFIVAEPFNALAEAKGVGKVLRFS
                     GDVWKDHACCLTLMHEYDIQHRPDWVQKVVNALTEAQVYTLENRAETAKLLARGSGYT
                     PHDQKVLEKVLAPTQAQWDKYIETGAIQNPQWHQQRIGFQPYPFDSYMEELVKMLKQT
                     HIAGNNAFLQQLDPVEAAKAINEPTFVRKAIEQGGWVETFNLQAGWTRTEQISV"
     gene            9252..9995
                     /locus_tag="PXB38_000359"
     CDS             9252..9995
                     /locus_tag="PXB38_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352724.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            10150..11208
                     /locus_tag="PXB38_000360"
     CDS             10150..11208
                     /locus_tag="PXB38_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL5352725.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAVPSTAEGLTRTKELEFMSLQGTNTTALVFDNVELKEEWILSDNAPEF
                     LATTRPAFLGLQFGLPFGLVEKSLSEIEKSLSFRAILTSEWQSQVDALNDIKNRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(11319..11861)
                     /locus_tag="PXB38_000361"
     CDS             complement(11319..11861)
                     /locus_tag="PXB38_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5352726.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAETPINPELQPFA"
     gene            complement(12013..13524)
                     /gene="glpK"
                     /locus_tag="PXB38_000362"
     CDS             complement(12013..13524)
                     /gene="glpK"
                     /locus_tag="PXB38_000362"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL5352727.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANMVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            complement(13528..14313)
                     /locus_tag="PXB38_000363"
     CDS             complement(13528..14313)
                     /locus_tag="PXB38_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL5352728.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            14526..14885
                     /locus_tag="PXB38_000364"
     CDS             14526..14885
                     /locus_tag="PXB38_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL5352729.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            complement(14933..16255)
                     /locus_tag="PXB38_000365"
     CDS             complement(14933..16255)
                     /locus_tag="PXB38_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5352730.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIILTCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            16404..17228
                     /gene="dapF"
                     /locus_tag="PXB38_000366"
     CDS             16404..17228
                     /gene="dapF"
                     /locus_tag="PXB38_000366"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL5352731.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            complement(17399..17941)
                     /locus_tag="PXB38_000367"
     CDS             complement(17399..17941)
                     /locus_tag="PXB38_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL5352732.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            18065..18388
                     /locus_tag="PXB38_000368"
     CDS             18065..18388
                     /locus_tag="PXB38_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL5352733.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            complement(18451..19896)
                     /gene="xylB"
                     /locus_tag="PXB38_000369"
     CDS             complement(18451..19896)
                     /gene="xylB"
                     /locus_tag="PXB38_000369"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL5352734.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAVLELSATQDLQAVKAISLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSAYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(20049..21368)
                     /gene="xylA"
                     /locus_tag="PXB38_000370"
     CDS             complement(20049..21368)
                     /gene="xylA"
                     /locus_tag="PXB38_000370"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL5352735.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            21610..22611
                     /gene="xylF"
                     /locus_tag="PXB38_000371"
     CDS             21610..22611
                     /gene="xylF"
                     /locus_tag="PXB38_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5352736.1"
                     /translation="MKLKSKLLAVATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSGKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            22678..24192
                     /gene="xylG"
                     /locus_tag="PXB38_000372"
     CDS             22678..24192
                     /gene="xylG"
                     /locus_tag="PXB38_000372"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL5352737.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            24196..25323
                     /locus_tag="PXB38_000373"
     CDS             24196..25323
                     /locus_tag="PXB38_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL5352738.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(25472..27337)
                     /locus_tag="PXB38_000374"
     CDS             complement(25472..27337)
                     /locus_tag="PXB38_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL5352739.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(27477..27992)
                     /locus_tag="PXB38_000375"
     CDS             complement(27477..27992)
                     /locus_tag="PXB38_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL5352740.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            complement(28004..29143)
                     /locus_tag="PXB38_000376"
     CDS             complement(28004..29143)
                     /locus_tag="PXB38_000376"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL5352741.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            complement(29247..31106)
                     /locus_tag="PXB38_000377"
     CDS             complement(29247..31106)
                     /locus_tag="PXB38_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL5352742.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQVAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            31408..31961
                     /locus_tag="PXB38_000378"
                     /pseudo
     CDS             31408..31961
                     /locus_tag="PXB38_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(32005..32940)
                     /locus_tag="PXB38_000379"
     CDS             complement(32005..32940)
                     /locus_tag="PXB38_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL5352743.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(32951..33748)
                     /locus_tag="PXB38_000380"
     CDS             complement(32951..33748)
                     /locus_tag="PXB38_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL5352744.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            complement(33791..34438)
                     /gene="hxpB"
                     /locus_tag="PXB38_000381"
     CDS             complement(33791..34438)
                     /gene="hxpB"
                     /locus_tag="PXB38_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL5352745.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRIASLLDVIEKLKQH"
     gene            complement(34501..34881)
                     /gene="gutM"
                     /locus_tag="PXB38_000382"
     CDS             complement(34501..34881)
                     /gene="gutM"
                     /locus_tag="PXB38_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL5352746.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            complement(35050..35838)
                     /gene="srlD"
                     /locus_tag="PXB38_000383"
     CDS             complement(35050..35838)
                     /gene="srlD"
                     /locus_tag="PXB38_000383"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL5352747.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADSNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYASEEAAYCTGQSINITGGQVMF"
     gene            complement(35886..36284)
                     /gene="srlB"
                     /locus_tag="PXB38_000384"
                     /gene_synonym="gutB"
     CDS             complement(35886..36284)
                     /gene="srlB"
                     /locus_tag="PXB38_000384"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL5352748.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLEDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            complement(36329..37330)
                     /locus_tag="PXB38_000385"
     CDS             complement(36329..37330)
                     /locus_tag="PXB38_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL5352749.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPLAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGTVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            complement(37361..37915)
                     /gene="srlA"
                     /locus_tag="PXB38_000386"
     CDS             complement(37361..37915)
                     /gene="srlA"
                     /locus_tag="PXB38_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL5352750.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
BASE COUNT        11194 a         7971 c         7923 g        10876 t
ORIGIN      
        1 ataatttttg acctaattta gaataattat cgagtgcaaa ttatgaatca atcttatttt
       61 aacttactag gaaacattac ttggctatgg atgaactcct ccctccacaa agaatggagc
      121 tgtgaactac tagcacgcaa tgtgattcct gcaattgaaa atgaacaata tatgctactt
      181 atagataacg gtattccgat cgcttattgt agttgggcag atttaaacct tgagactgag
      241 gtgaaatata ttaaggatat tagttcatta acaccggagg aatggcagtc tggcgataga
      301 cgttggatta ttgattgggt agcaccattc ggacattctc aattacttta taaaaaaatg
      361 tgtcagaaat atgctgatac actcgtcaga tctatacgct tccaaccaaa tcaaaaatca
      421 gtaggaaaaa ttgcttattt caaaggaggt aaattagata aaaaaacagc aaaaaaacgt
      481 tttgatacat atcaagaaga gctggcaaca gcacttaaaa atgaatttaa ttttattaaa
      541 aaatagaagg agacatccct tatgggtaat aaacttacta atatttcaac aaatttaaaa
      601 agttcctggt tgactgctaa atccggttta aatagaacag gacaatcatt agctaaagca
      661 gggcaatctt taaaaacagg ggcaaaaaaa atcatcctct atatcccaaa agattaccaa
      721 tatgataccg ataaaggtaa tggtttacag gatttagtta aggcagctga agagcttggt
      781 attgaagtgc aaaaagaaga gagcaatgat attgcaaaag cacaaaccag tttaggcaca
      841 attcacaatg tattgggttt aactgagcgt ggtattgttt tgtcagcccc tcagcttgat
      901 aaattgcttc aaaaaaccaa agtaggtcaa gcgattggct ctacagaaaa tattacaaaa
      961 ggttttagta atgcaaaaac agtattatct ggaatccaat ctattctagg ttctgtctta
     1021 gccggtatgg acttagatga agcattacaa aataacagca atgagctaac acttgctaaa
     1081 gctggtttag agttaaccaa ctcgttgatc gaaaatattg ctaactcagt gaaaacatta
     1141 gacgcctttg gtgatcaaat taatcaactt ggttcaaaac tgcaaaatgt caaaggatta
     1201 agctctcttg gcgaaaaact aaaaggtctg agtggctttg ataaaaccag ccttggttta
     1261 gatattgtat ccggcttgct gtcgggagca acggctgcac ttgtacttgc agacaaaaac
     1321 gcttcaacat caagaaaagt gggtgcaggt tttgaattag caaaccaagt tgttggtaat
     1381 attaccaaag ccgtttcttc ttacatttta gcccaacgtg ttgcagccgg tttatcttca
     1441 accggacctg tggcagcctt aattgcttct accgtttctc ttgcgattag cccattatca
     1501 tttgccggta ttgccgataa atttaatcac gcaaaaagtt tagaaagcta tgctgaacgt
     1561 tttaaaaaat taggctatga cggtgataat ttattagcag aatatcaacg tggaacaggg
     1621 actattgatg cttcagtaac agcaatcaat acagcattgg ctgctattgc tggtggtgta
     1681 tctgccgctg ctgccggctc tgtggttgct tcaccaattg ccctacttgt atcaggtatt
     1741 accggtgtga tttccactat tctacagtac tctaaacaag caatgtttga acacgttgca
     1801 aataaaattc acaataaaat tgtagaatgg gaaaaaaata atccaggtaa gaactacttt
     1861 gaaaatggtt acgatgcccg ttatcttgcg aatttacaag ataatatgaa attcttactg
     1921 aacttaaaca aagagttaca ggcagaacgt gttattgcaa ttactcagca gcaatgggat
     1981 aacaacattg gtgatttagc cggtatcagt cgtctaggtg aaaaagtact tagcgggaaa
     2041 gcctatgttg atgcctttga agaaggtcaa catcttaaag cggataaatt agtgcaatta
     2101 gattctgcga aagggattat tgatgttagt aacactggag aagcgaaaac acagcatatt
     2161 ttattccgga caccgttatt aactccggga acagaaaaac gcgagcgagt gcagacgggt
     2221 aaatatgagt atattactaa acttcatatt aaccgagtag atagctggaa aattacagat
     2281 ggtgcagcaa gttctacctt tgatttaact aacgttgttc agcgtattgg tattgaatta
     2341 gacaatgctg gaaatgtaac taaaaccaaa gaaacaaaaa ttattgccaa acttggtgaa
     2401 ggtgatgaca acgtatttgt tggttctggt acgacggaaa ttgatggcgg tgaaggttac
     2461 gaccgagttc actatagccg cggaaactat ggtgctttaa ctattgatgc aaccaaagag
     2521 accgagcaag gtagttatac cgtaaatcgt ttcgtagaaa gcggtaaagc attacacgaa
     2581 gtgacttcaa ctcacaccgc attagtgggc aaccgtgaag aaaaaattga atatcgtcat
     2641 agcaataacc agcaccatgc cggttattac accaaagata ccttgaaagc tgttgaagaa
     2701 attatcggta catcacataa cgatattttt aaaggtagta agttcaatga tgcctttaat
     2761 ggtggtgatg gtgtcgatac tattgacggt aacgacggca atgaccgctt atttggtggt
     2821 aaaggcgatg atattatcga tggtggaaat ggtgatgact ttatcgatgg cggtaaaggc
     2881 aatgacctat tacacggcgg taaaggtgat gatattttcg ttcaccgtca aggcgatggt
     2941 aatgattcaa ttactgaatc ggaaggtaat gataaattat cattctctga ctcaaatcta
     3001 aaagatttaa cctttgagaa agtaaatcac caccttgtga ttactaatac caagcaggaa
     3061 aaagtcacca ttcaaaactg gttccgtgaa gcagagtttg caaaaacaat tcaaaattat
     3121 gttgcaacaa gagacgataa aattgaagag attatcggtc aaaatggtga acggattacc
     3181 tcgaagcaag tggatgaact tatcgaaaaa ggtaacggta aaatcgctca gagtgaactg
     3241 acaaaagttg tggataacta tcaattactc aaatatagcc gagatgcatc aaacagttta
     3301 gataagttaa tctcatctgc aagtgcattt acctcgtcta atgattcgag aaatgtatta
     3361 gcgagcccaa cttcaatgtt ggatccgagt ttatcttcta ttcaatttgc tagagcagct
     3421 taatttttaa tgattggcaa ctctatattg tttcgcacat tatggagttg ccgttttatt
     3481 ttataaaagg agacaatatg gaagctaacc atcaaaggaa tgatcttggt ttagttgccc
     3541 tcactatgtt ggcacaatac cataatattt cgcttaatcc ggaagaaata aaacataaat
     3601 ttgatcttga cggaaaaggg ctttctttaa cctcttggct tttagccgca aaatcgttag
     3661 cgttgaaagc gaaacacatt aaaaaagaga tttctcgctt acacttggtg aatttacctg
     3721 cattagtttg gcaagataac ggtaaacatt ttttattggt aaaagtggat accgataata
     3781 accgctattt aacttacaat ttggaacaag atgccccaca aattctgtca caagacgaat
     3841 ttgaagcctg ctatcaaggg caattaattt tggtcacatc tagagcttcc gtagttggtc
     3901 aactagcaaa gttcgatttc acctggttta ttccggcggt gatcaaatac cgaaaaatct
     3961 ttctagaaac cttgattgtt tcgatctttt tgcaaatttt tgccctaatt acaccgctat
     4021 ttttccaagt tgttatggat aaagtactgg tgcatcgagg tttttcaacc ttgaatatca
     4081 ttacggttgc cttagctatt gtgatcatct ttgaaattgt cttaagcggt ttacgcacct
     4141 acgtgttttc ccatagcact agtcggattg acgtggaatt aggcgctaaa ttatttaggc
     4201 atttattatc gttacctatt tcttattttg agaacagacg tgttggcgat acagttgcac
     4261 gggtcagaga attggatcaa atacgaaatt tccttaccgg acaagcatta acctcggtat
     4321 tagatttatt attctctttt atcttttttg ccgtaatgtg gtattacagc ccgaaattga
     4381 ccttagtcat tctcggctca ctaccctgct atattttatg gtcaattttt attagtccga
     4441 ttttaagacg gcgtttagac gataaatttg cccgaagtgc tgacaatcaa gcattcttag
     4501 ttgaatcggt aacagccatc aatatgatta aagcgatggc ggttgctcca caaatgacgg
     4561 atacatggga taaacagctg gcaagctatg tttcatcaag cttccgtgtc accgtattag
     4621 caaccattgg gcaacaaggt gtacaactta ttcaaaaaac cgttatggtg atcaaccttt
     4681 ggctaggggc acacttagtt atttcaggcg atcttagtat tgggcaatta attgccttta
     4741 atatgctatc agggcaagtg attgcaccgg tgattcggct ggctcagctc tggcaagatt
     4801 tccaacaagt tgggatttcc gtcactcgct taggtgatgt tttaaactct ccaaccgaac
     4861 aatatcaagg caaattatca ctaccagaaa taaaaggcta tatctcattt aaaaatatcc
     4921 gctttagata taaaccagat gcaccaacta ttttaaataa tgtgaattta gaaattaggc
     4981 aaggagaagt gattgggatt gttggacgtt ccggttcagg caaaagtact ctgactaaat
     5041 tactgcaacg tttttatatt cctgaaaatg ggcaggtttt gattgatgga catgatctag
     5101 ccttagctga tccaaactgg ctacgccgtc aaataggtgt agtgctgcaa gataatgtgt
     5161 tattaaaccg cagtatccga gaaaatattg cgctatcaga tccaggaatg ccaatggagc
     5221 gagtaattta tgcagcaaaa ttagcagggg ctcacgattt tatttcagaa ttgcgtgaag
     5281 gttataacac cattgtgggt gaacaaggag cggggctttc aggcgggcaa cgccaacgga
     5341 ttgcgattgc tcgagctttg gtaaacaacc cgaaaatcct gatttttgat gaggcaacca
     5401 gtgccctcga ttacgaatct gagcatatta ttatgcaaaa tatgcaaaaa atatgccaag
     5461 gcagaaccgt gattttgatt gcacatcgtt tatcgaccgt caaaaatgcg gatcgaatta
     5521 ttgtgatgga aaagggggaa attgttgagc aaggcaagca ccacgaatta ctgcaaaaca
     5581 gtaacggact ttattcctac ttacaccaat tacaacttaa ttaagaagga aaacaatgaa
     5641 aatatggctt agtggtattt atgaattttt cctacgctat aaaaacattt gggcagaagt
     5701 atggaaaatt cgtaaagaat tagaccaccc aaacagaaaa aaagacgaaa gtgaattttt
     5761 accggcacat ttagaactga ttgaaacccc ggtttctaaa aaaccacgtc taattgctta
     5821 tttgattatg ctatttttag ttgtggcaat tgtgcttgcc agtgtaagca aagttgaaat
     5881 tgtggcgact gctcccggta aattaacttt tagtggcaga agtaaagaaa ttaaaccgat
     5941 tgaaaacgcc attgtacaag aaattttcgt taaagatggg cagtttgtgg aaaaagggca
     6001 attattagtc agcttaactg cattgggttc tgatgcagat atcaaaaaga ccatggcttc
     6061 actttcttta gctaaactgg agaactatcg ctaccaaact ttgcttactg ccattgaaaa
     6121 agagtccttg ccggtgattg atttatctag aaccgaattt aaagattcat cggaagaaga
     6181 tcgactacgt attaaacact taattgagga gcaatacacc acttggcaaa aacaaaaaac
     6241 acagaaaact ttagcgtata agcgtaaaga ggctgaaaaa caaacaatat ttgcctatgt
     6301 ccgtaaatat gaaggtgcaa cacgtattga acaagaaaaa ttaaaagact ttaaggcact
     6361 ttataaacag aagtctttat ctaagcacga acttcttgcg caagaaaata aattaattga
     6421 ggctcagaat gagctagctg tttatcgctc aaaattaaat gaattagaaa atgatctact
     6481 caatgtaaaa gaagaacttg aattgatcac gcaattcttt aaaagcgatg tgttggaaaa
     6541 attaaagcaa catattgaaa atgaacgcca acttcggctc gagttagaaa aaaataatca
     6601 acgcagacag gcctcgatga tcagagcacc ggtttccggt acggttcagc aactgaaaat
     6661 tcacactata ggtggtgttg ttacgactgc tgaaaccttg atgatcattg tgccggaaga
     6721 cgatgtgtta gaggccaccg ctctggttcc aaacaaagat atcggctttg ttgcagcagg
     6781 gcaggaggtg attattaaag tggaaacttt cccttataca cgctatggtt atctaactgg
     6841 tcgaattaaa catattagcc cggatgcgat tgaacaacct aatgtaggct tagtttttaa
     6901 tgcaactata gctatagata ggaagaatct aacatcgcct gatgggcgaa aaattgattt
     6961 gagttcaggt atgacaataa ctgctgaaat caaaaccggt gaacggagtg taatgagtta
     7021 tttactcagc ccattagaag aatctgtcac agaaagttta agggaacgct aatcgaacca
     7081 aaacaaagcc ataaaagcca ttttgagctt ttatggcttt attttttagt ccacaagcgg
     7141 tcaaaaaagc ccaatttttt acacttttat aacaaattgt tctaactaaa aattactaat
     7201 tcttttcttt tataagacga atcctctatt ttcatttcat taacattgaa ctagaaaagg
     7261 ggatttatga gcctaagcat tacgaatctt tctcttggct accgcaaaaa tcagcaaacc
     7321 aagaccattt tgcacgatgt cacttttaac gtagaaagcg gcactttaac ctcgattctc
     7381 gggccgagtg gggtggggaa gtcctcgctg ctgcgggtga tcagcgggtt agataaaccc
     7441 ttaagcggaa aggtggcgtt attcggggag aaaatcaatc agccacaccc cgatgtgggc
     7501 tttgtgtttc aatcggcgac cttgttgcct tggctttcgg tgcgaaataa cgtggcattc
     7561 ggtttagatt ttcaatgccg cttaccactc agcaaagccg atattcagca cagggtggaa
     7621 tcggctttgg aggaagtcgg cttgcgtgag gcaatcgatc ttatgccgca tgaactttcc
     7681 ggcggtatgg cacagcgggt gaatttggct cgggcattgg ctcgtcagcc gaaagtgatt
     7741 ttgctcgatg aacccttttc cgcccttgat gaagtcattc gcagccaaat gcaaacctta
     7801 ttacacgata ttgtccgcca ccataatgcg gcagcgatta tggtaacgca cgatattgat
     7861 gaagccttat tggtttcaga tgatgtgtta ttacttggcg gagataccgc ccatattgtt
     7921 ggaaaatggc atttatctgc tccattcccc cgtactgatt tattgagtct gaaccctatt
     7981 cgagtcgaga ttttacacac gcttagacag gctcagcagc gagcggtgca agagcagaca
     8041 gttgattttg tgatttaagg agaaagtgat ggatcagcaa cgtagagatt ttatgaaact
     8101 gctcagcctg ttttcccttg caggtagttt accgttaatt caagcctgcg aacaggtgca
     8161 aaaaaatgcc gaaaatcgac cgcttgttat cggctacttg ccgattaccg acgccacacc
     8221 gctgttagtt gctcacgcca aaggcttatt tgaaaagcac ggtgtgcagg tggaaaaacc
     8281 ggtgatgttt cgcagctggg ctcagttggt ggaagccttt ttaagtggca atgtgaacgt
     8341 ggtgcatctg ctttcgccta tgagtttgtg ggcgaaatat ggagcaaatg ctccggtgaa
     8401 agcggtaatg tggaatcact tggcaggttc ggctttaacg gttcgccctg aaatcaacag
     8461 tattgccgaa ctctccggca aaacggtagc aattccgttt tggtattcaa ttcataatat
     8521 cgttttgcaa cgattattac gagaaaatgg cttgaaaatc accgaaaaag agccgaacag
     8581 cggcgaagtg cgattaagtg tgatggctcc gtcagatatg gtagcagcct tggcaagcga
     8641 ggcaatttca ggctttattg tggcagagcc gttcaatgcg ttggcggaag ccaaaggtgt
     8701 gggcaaagtg ctgcgtttta gtggcgatgt gtggaaagat cacgcctgct gtttaaccct
     8761 aatgcacgaa tatgatattc agcatcgccc cgactgggtg caaaaagtgg taaatgcctt
     8821 aaccgaagca caggtttata cgctggaaaa tcgggcagaa acagcaaaat tgttggcacg
     8881 gggcagcggc tacacgccgc acgatcaaaa agtgctggaa aaggtactgg ctccaaccca
     8941 agctcagtgg gataaatata tcgaaacagg ggcaattcaa aaccctcagt ggcaccaaca
     9001 gcgaatcggt ttccaaccgt atccgttcga ttcctatatg gaagagctgg tcaaaatgct
     9061 caaacagacc cacattgccg gcaataatgc gtttttacaa cagcttgacc cggtagaggc
     9121 agcgaaagcg attaacgagc cgacctttgt gcgaaaagcg attgagcaag gcggttgggt
     9181 tgaaaccttt aatttacaag ccggttggac aagaaccgag caaattagtg tataagcgat
     9241 aggaacgaac gatgaaacag aaatatattt acggcttagc cggtttatta ctgctacttt
     9301 taggttggca gcttggcaca gccttgttaa gccaacggtt gccgatggca tcaatgttag
     9361 ctccggcaaa aacctgggaa agttttactt ggctgatttc ctccggcgaa atttttccgc
     9421 acttatgggc gagtttgcaa cgcattgctg tcgggctact cgctgcgtta gtgattggtg
     9481 taccgctggg cttattgctc ggcttctcca agcaccttga aatgctttgc acgccgtcat
     9541 tccaactact acgtatgatt tcgccacttt cgtggatgcc gattatcgtg atgttacttg
     9601 gtgtaggcga tttgccgatt tattttttac tggcgtttgc caccgtttgg tcgttgatta
     9661 tttccaccac ctcaggggta aaaagcattg atccacaatg gttacaactg ggtagagtaa
     9721 tgtcggctac ccgcaaagaa ctgctgtgca aaattgttgt accggctatt accggacacg
     9781 ttctcaccgg tttacgtgtg gcggttggga ttgcgtgggt ggtgctggta ccgtgcgaaa
     9841 tgctaggcgt gaatcaagga ctcggctatt ttattttaga cacccgagac cgattagcct
     9901 attccgaact gatggcggta attataatta tcggcttaat cggctgggcg ttggatagct
     9961 taatccgctt ggctttagcg aaaggcggca gataaattga caagcggtcg aaaaattgca
    10021 tttttttgca aaaaatcgac cgcttgttta ttccaaaaaa gcatattacc ttaatttatt
    10081 ttatttctag ggcataaaaa agcgatttaa gatagcgaca aagtaaacta attatacgag
    10141 gtaaacacaa tgtcggttct ttcatcttct tttattcaat ggcttcagca gaacgccgaa
    10201 aatttagatc aatctaacga acgagcggat ttactcattc cacaaattgc cgcactaggg
    10261 ctatataaaa tcggcgtgcc ggaaacgctt ggcggcagcg gtggcacttt ggttgatgcg
    10321 atcaaagccg ttaccgaact gggtaatcac tcgctggctg cggcatttgt ttcgtgggga
    10381 catcgtacct ttatcgagca tattatcgcc tcaaaaaatc ctattccccg ccaaagctat
    10441 ttggcggatc tgctaaatgg caatttaacc gcaggaacag gtttatcgaa tgcaatgaaa
    10501 tttctctccg gcattgaaga gttgaatgtg aatattcgtg aagaaaacgg taaacgctat
    10561 ttaaatggcc gcctgccttg ggtaaccaat ttacgttcat accgctttgt tgccagtttt
    10621 gttgccggct tccaagatga acgcaaaccg ctggtgattg ccgttccctc aactgccgaa
    10681 ggcttaaccc gcactaaaga gctggaattt atgtcgctac aaggcacgaa tactactgct
    10741 ttagtgtttg acaatgtgga attaaaagag gagtggattt tgtccgataa tgcccccgaa
    10801 tttttagcca caacccgccc tgcgttctta ggcttacagt ttggcttacc ctttggcttg
    10861 gtagaaaaaa gtttatcgga aattgaaaaa tcgctctcct tccgtgcaat tttaacgtct
    10921 gaatggcaat cccaagttga tgcgttaaac gacatcaaaa accgtttatt caatggctta
    10981 aatgaagagg gctattttgt tcgtaacccg aaagagctgt tccaagccag aatcgatatt
    11041 gttaatgtcg tcgcccaaac cattctgtta gaactacaag cgagcggtgg acgtggttat
    11101 ttgaaaaacg atacttcagg cttcagccgc cgttggaaag aagccgcatt cttacctgtg
    11161 gttacaccaa gtgcggtgca gctgagaatg gtattggcaa atagttaaac ctgagaggca
    11221 aatattgcct ctttttattt gcaaaaaatt gaataaaaat aaccgcttgt aaatataaaa
    11281 aaggacgcat taagcgccct aaattttatt attttcgatt acgcaaaagg ctgcaattca
    11341 gggttgattg gcgtttcggc aatgttgttc acatagttac ataaggttgc gaggctcacg
    11401 cctaaaatca catcaatcgc attttgttgg ttgtaacctg cggcaaaaaa ttcgtttaat
    11461 tgggcttcgg ttaatttggc tttttgtaac attactgcaa gggtgaagcg agccagagtg
    11521 tctaatttgt tatcgtctat gcgagccgtg gcacgtaaag catttaccac ttcttcaggc
    11581 atttttaatg cttttaaggc gattttagta tgacctgcca cgcagaaacc acagccgttg
    11641 accactgctg cggtgatttg taccacttca cgttcttcag cggttaagct gttacgacta
    11701 ttaataccac ccacagtgcg gtaagtttcc agtgctgttg gggcgttggc taatacgccg
    11761 atcagatttg ggataaaacc gtttgcttgt tgcactgctt ttagggcttc ttgtgccgtt
    11821 tcaggagcgg attcaatagt gtgaatttga aattgagaca taaatgttcc ttatcaggtt
    11881 gtttattggt gtggctcatc ataaagaaaa ggctaattta gaacaaatca aaatcactat
    11941 ttaatataac taaaagatct taaagggagt atagttgcct atactccctt tgtttatgca
    12001 caggttgcgt ttttactctt ctgcgtcttc ttttgcccat tctaatgagc ggcgaacggc
    12061 ttttttccaa cctttatagc gtttcgcccg tttttcttgg tcgccgtccg gtgtgaaggt
    12121 acgttcaatt tccgctttgt ctttcagttc ttccaaatct ttccagaagc cgacagcaat
    12181 acccgcaaga taagctgccc ctaaagcagt gacttctttc actttcggac gctcaacttt
    12241 ggtgtctaaa atatcggctt ggaactgcat taagaagttg tttgcggttg caccaccgtc
    12301 cacacgtaac gcttgtagtt tcgctttgga gtcagactgc attgcttcta acacatctcg
    12361 ggtttggtaa gcgatagact ctagggtcgc acgcacaatg tggttacggt ttgccccacg
    12421 ggttaaaccg aaaattgagc ctcgtgcata cggatcccaa tatggagcac ctaagccggt
    12481 aaaggcaggt acaacataaa caccgttaga gtcatcttct ttagtggcaa aatattcgct
    12541 gtcaaagcta tcgtgaacaa ttttcagctc atcacgcagc cattgaatag acgcaccggc
    12601 aataaatact gaaccttcca acgcatattc cggctcgcct tttgcgttac acgcaatggt
    12661 cgttaataaa ccgttttcag attgaatcgc agtgttaccg gtgtgcatca acataaaaca
    12721 gcctgtacca taggtattct tcgcttgtcc ttctttcacg cataaatgac cgtagagagc
    12781 ggcttgttgg tcacctgcaa tacccgcgac cggaatacgc acaccgcctt gaccgccgat
    12841 attagtttgc ccgtaaactt ctgatgaatt tttcacttca ggtaacattg agcgtggaat
    12901 attgagcaat tccagcattt tatcgtccca ttgtttggtg tgaatgttaa acaacatagt
    12961 acgagaagcg ttggtgtaat cggtaacgtg tacccgccct tgggttaatt tccacactaa
    13021 ccaagtatca actgtaccga acagcaattc gcctcgttct gctttttctc ttgccccttc
    13081 tacgttatct aaaatccact tcactttagt gccggagaag tacggatcga ctaccaagcc
    13141 tgtcgtttta cgaatatatt cctcgtgtcc gtctgctttt aatttatcgg taatatccga
    13201 tgtgcgacga cattgccaca caatcgcatt ataaacaggt ttaccggtct ctttttccca
    13261 cacaatcgtg gtttcacgtt ggtttgtgat cccgattgcg gcaatgctat ccggcttaat
    13321 accggctttt gccaccactt catttaaggt ggaactttgg cttgaccaaa tttccatcgg
    13381 gttatgttct acccagcctg cttgcggata aatctgggta aattcacgct gagccacttc
    13441 aaccatattg gcatttttat ctaataaaac cgcacgagag ctggttgtac cttggtcgag
    13501 agcgatgata tattgttttt ccatagatta ctcctgagta tttgctggaa gattgttatg
    13561 aatgaggttt ttataacccc aagcaccgaa taatgcaccg cagattgggg cgacaatcgg
    13621 aatgatgaaa tacggaattt cttttccgcc tgttaaagca atttcacccc aaccggcaag
    13681 ataagcaaag agtttcggac caaaatcacg agccgggttc atcgcaaagc cggttaacgg
    13741 gccggttgct ccaccaatta ccgcaatcaa taaaccgatg agtaatgcgg ctaaggcttt
    13801 attcggcaag ccgtttttat catcgccaat cgctaaaata gtggacatca acaccacagt
    13861 aatcacaaat tcaacgatga aggcggtaac caatgtaata ttagggtttg gataggtgga
    13921 gaacacaccg gcaaagccaa cagtttcgcc ccgagtaatg ccttgagcgg cttcggcggc
    13981 agtaaagaga tcgctataca taaaataaat cagtgcgaca gagcaaaacg ctccggcaac
    14041 ttgggcgatg acatagggca aaattttatg cttttcaaag ccgtagaatg cggcaagtgc
    14101 tatagtgacc gcagggttaa ggtgagcacc ggaaataccg gcagaaatgt agattgccat
    14161 ggaaacacca agcccccaaa cgatggaaat ttcccataaa ccgaaattcg caccggctac
    14221 ctgagcagca gcaacacaac cagcaccaaa gaaaagaata aaacctgtac cgataaattc
    14281 gccaatacag gcattacgta aggatttgct cataaagttt ctccttaaga tgaaaatgat
    14341 tggaaagtga tgaaaaaatg tttgaatatg aacatatttc ggagtgatat tgccaaagcg
    14401 gcatttttta agcaaatagg aagtttcaaa tttgtgaaat ccatcacatt atttttctaa
    14461 atcactcatt tttaggtatg atgtgagaaa acgttagatg aggaaaaatg atgtcttcaa
    14521 tacttatgat ttcaatcggg gcggtacttg gagctatgtg ccgctggcaa ttagccgttt
    14581 ggctaaaccc gatactcagc caattcgcct ttggtacttt agcagcaaat tggcttggtt
    14641 gtttgttaat tggtattgca atggggttta atttaggcga gagccagcgg ttgctgttca
    14701 tcagcggttt tttaggcagt tttaccacct tttccagttt ctctttagaa ctaacggaaa
    14761 aactattagc agaaaaatgg gggcagtttg tgacagtgct gagtttacat ttaatcggtg
    14821 ggcttttgct tactttgata ggtgtaatgc ttgcaagagc cgttacaagc ggtcgttttt
    14881 gctgaaaatt ttgcaaataa aaaacctccc aaacgggagg ttttgcgagc gattaaagta
    14941 ggatattgga aagtaataaa ccaaatccga tactgaaaat catactaagt aagcccggta
    15001 acataaagct atggttgaaa atatatttac cgatacgggt tgtgccggtg gtgtcgaagt
    15061 caatcgaggc aataatcggg ccgtagttcg gaatgaagaa gtagccgttt accgccacaa
    15121 ataccccgat tagcaccggt gcaggaatgc cgatagcaat cgctacaggg aataaggttg
    15181 caaccgttgc cccttggctg tttaccaata cggaaagtac gaataatgcg aaagcaaatg
    15241 cccaaggtgc ggtttcaact aagcctgaca ccattgattt cacttcatcc atatgacctt
    15301 gcattaaggt atcgcctaac cacgcaatac cgaaaatcgc aatcactgca cgcataccgg
    15361 cgtggaagac agaaccttta gtgatttcat tgccgtccgg tttacaggta agaataatca
    15421 acgcaccaat acttaacatc acgatttcaa tggtgtgagc catccccatc ggcttaccat
    15481 caaacacagg gcgaagagct ggaattgcgc ccattaatac cactaataat gcaccgaata
    15541 ggaataagcc tactgataat ttcgcagtcg gttttaacgg taattcggtt ggattggtag
    15601 taatgtgatt ttctttcaca tattcagggt cttgcaataa gcgttgataa tttgggtcgt
    15661 cttttaattc tttgcccatt ttatttacaa acacacaagc taaacctaag cccaataagg
    15721 tcgcaggaat agtcacactt aacacgttac ccaatgtaac accttgaggt tcaaggaagg
    15781 caaccacagc aactactgcc gcagcaatcg ggctggcgac aatcgcaaat tgtgaggcga
    15841 ttactgccat tgaaagtgga cgctcagggc ggataccgtt gtggcggctt acctctgcaa
    15901 ttacaggtaa tacagaataa gcaacgtgac ctgtaccggc aagcacggtg aatgtccaag
    15961 ttacaagcgg tgcgataaag gtaatgtatt tcgggttttt acgcaaaatg cgagtggcaa
    16021 ttttgatcat atagtccaaa ccaccggctg cttgcatggc tgctgcagcc gacacaaccg
    16081 ccataatcat aaacattaca tcaatcggta aaccggcagg ttttagccca aacccaaatg
    16141 aaagaatggc taagcccaag ccaccgaaca cccctaatcc gataccgcct acacgggcgc
    16201 caaccaaaat gcatagtaac actatggcaa attggataat aaacatcgca gacataattt
    16261 tttgctccta aataagtaaa tgaaactctg tgtttgaaaa aatctgcatt tttcatcaaa
    16321 ttaatcggca cgtactatat caataaataa aactaatctc tataatctaa atcaataaaa
    16381 tttctaatta attaaggaat aatatgcaat tttcaaaaat gcacggctta ggcaatgatt
    16441 ttatggtggt tgatggtgta acccaaaacg tttaccttac cgaagagatg atccgtacgc
    16501 tttctgatcg ccatcgtggt atcggtttcg accaactttt attggttgaa ccgccttacg
    16561 accctgaatt agattttcac tatcgcattt ttaatgcaga cggcagtgaa gtgtcgcaat
    16621 gtggcaatgg ggcgagatgt tttgcccgtt ttgttacgct caaaggctta accaacaaaa
    16681 aagacattca cgttagcacc gcaaaaggca aaatggtgct aagtttgcaa gaagacggca
    16741 aagtgcgtgt gaatatgggc gaaccgattt gggaaccttc gcaagtgcct tttacagcaa
    16801 ataaatttga gaaaaactat attttacgca ccgagctaca aaccgtgtta tgtggcgtgg
    16861 tttcaatggg gaatccgcac tgcgtactgc aagttgatga tgtgaaaacc gccccggtaa
    16921 atgaactcgg gccgttacta gaaagccacg agcgttttcc tgaacgggcg aacatcagct
    16981 ttatgcaagt agtgaatcgc aatcacgtta aattacgggt gtatgagcgt ggagcaggcg
    17041 aaacccaagc ctgtggtagc ggtgcgtgcg gcacagtggc ggtcggcatt atgcaaggct
    17101 tgttagataa caaagtgcag gtggatttac ccggtggaac gctgattatt gaatggcaag
    17161 gagtagggca tcctctgtat atgaccggcg atgccaccca catttatgat ggatttatta
    17221 aactgtaagt tttcccatag ggaggcaagc ggtttatttt taccgttttt ttgcaaaata
    17281 gggttggttt atacaaaagt accagcgtgg acgctggcac tatcagactg atgtataact
    17341 tttgtttaaa ttcaacttat agatggtgca agcgtcctcg cttgtaccaa aacaggtttc
    17401 actcgagtaa cttcttcacc aactccaaca ccacaggtaa ttcggtaaca ccttctctat
    17461 ccaaaaaatg cccgccttga tttaaccgaa tataatccgc gtgcaaatgt tgggctaacg
    17521 catcactgta ttggtgattc acgaccttat catctaacgc acttaccaca tagcttggaa
    17581 agctcgatac gctcggcaaa atcgcataat agttggtaaa ggcagacagt tcgggtaagt
    17641 tttctaccgg ttgatagaac cccgacacaa acaccgcccc tttaatcttg gcgtaatttt
    17701 tggctaaaaa attcaaaatg gcaatgcaac ctaaactatg cccgacaaaa accgtttgat
    17761 cggtcagctc cacattttgt gcaagatgat ttaaccaacc atctaatgac ggctttgccg
    17821 aatccggcat attcaaccgc tcacaactga caccacactt cgctaattct tgctccagcc
    17881 aaggaaacca atgcttatcg gcattcgccg tataaccgtg tacgatataa acctgtgcca
    17941 tttcacacct cctgattcac caaagattgt accatagctt aatcaggaaa aaacaagcgg
    18001 tgattttttt aaattttttt gcaactcagg taaaatagca cgcatttacg caaagaggtc
    18061 atcaatgaac gtttggattt tacttgcgat ttccatctgc ctcgaaatcg ctgccaccaa
    18121 tttactcaaa ttaagcaacg gcttcaccaa agctataccg actattggct cgctcgcctt
    18181 atacggttta tccttttact ttctctctat tattttccgc accctaccgg tcggaatcgt
    18241 gtatgctatt tggtccggcg tagggattgt ccttaccgcc cttgttgctt attttgcttt
    18301 cggacagaaa attgacttgg caggcttaat cggcatcagc ctcattattg ccggtgtatt
    18361 ggtgattaat ttgttttcta aagtgtgata caagcggttg attttacaaa aaaatctgca
    18421 aaatcaaccg cttgtaatag ttggcaagaa ttataacccc tttaaccgcc ggtaaagctc
    18481 agtaaatttt tggcgttttt gttgatattc tgcatagcgg gcaggggttg gttggtaaac
    18541 ctgttccagg ggtaacggct gacagaacgt agcaatatcc tgatttgggt ttagcgcaat
    18601 ttgagcgagt tttgccgccc ctaatgccgg accgacatca ccactggtgc ggtattcaaa
    18661 ggttttaccg ctaatatcgg caagtagttg tcgccagtac gcactttttg ctccaccgcc
    18721 aattaatgca atattgtcag caactacacc agtttcgtgg agtacctcaa tcccttcagc
    18781 caaagcgaaa cttacccctt caatcacggc ttttgccatc gttatttggt tgtcattatg
    18841 gcttaatccc caaaatacgc ctttcgcata agggtcatta tgcggtgtac gttcacccga
    18901 taaataaggt aagaaaatag catcagatgc cgtttggctt gcttcaacct gttggaataa
    18961 agtcgataca tcttttagtc ccaatgattt tactgcccaa tctaccgcag aagcggcact
    19021 taatattact gacatcagat gccaacgatc aggtaaagcg tggcaaaaac tatgcactgc
    19081 tttttgcgga ttagcctgaa atttatcgct cactacaaaa taaacccctg aagtccccaa
    19141 tgagagcata gcttgcccgg tttggtataa gccaatgccg attgcaccgg cagcattatc
    19201 gccaccgcct gccacaatcg gcacagattt cattttccat tgctcggcaa gggttggacg
    19261 taaataacct gtgatttgat tgccttcaaa cagtttcggc atattttcaa tgtctaatcc
    19321 gcaagcattt agtagcgatt tgttccaatt ccgtttaccc acatcaagcc acattgtgcc
    19381 ggaggcatca gacatatcag aggcatattc gccgctcatc aacaagcgga gataatcttt
    19441 cggtagcaag actttgctga ctttttcggc aatatcgggc tggtgtttat caacccaacg
    19501 caatttcgga gcggtaaagc ccggcatcat caggttgcct gtaatttcac ggctatttgg
    19561 cacaagctgt tctaactctt cgcattccat aaaactacgt ccgtcattcc ataaaatcgc
    19621 aggggaaagt acattatctg cgttatctag taaagtcgct ccgtgcattt gcccggttaa
    19681 actaatcgct tttactgctt gtaaatcttg agtagcggaa agttctaaca ccgcttcatt
    19741 ggtggcattc caccaatctt gcggattttg ttcagaccac aatgggtgtg gacgaaaaat
    19801 aggaagtgat ttttgtgtga tggcaataat gtgttgattt tcatcgagta acacgacttt
    19861 cacacccgat gtgccgagat cgattccaat gtacataaat attcctttgt tattgaatac
    19921 aagcggtcat tttattcgga acatttgcaa ttttaagttt tggagatcta tcacccctct
    19981 ttagcaaaga gggggatcag atcgagctta actttgcaaa aaattgataa aaaacaaccg
    20041 cttgtagatt aacggtaaat atagctattt accaaatttt ccaaatattc ttgctgaccg
    20101 gaaacaggtt ttggatctaa cccttgggtt tccactattt ttgccaaatc ttcaaggctt
    20161 gctttaccgt ttagaatttg taagcccaaa tcttggttcc agccagcgta gcggttatct
    20221 actactttct gtaatgcttg atcttccagc atttttgccg cacgttttag cgaaagggct
    20281 aacacatcaa ttgccccgat atgtgcgtgg aataaatcat acggatcggt actttggcgg
    20341 cggattttcg catcaaagtt gaaaccgccc gttgtgaaac cacctgcttt taagatttca
    20401 tacatcacaa gggtgttttc ttccacgctg tttgggaatt ggtcggtatc ccaacctaat
    20461 tgcggatcac ctcggttggc atcaatcgag ccaaaaatat ctaatgcggt ggcagtcgca
    20521 atttcgtgtt ggaaagtatg ccctgcaaga gtggcgtggt ttgcttcaat gttgactttg
    20581 atctcttttt ctagaccaaa ctgttttaag aaaccgtaaa cggtggcaac atcgtagtca
    20641 tattgatgtt tggttggttc ttgtggtttt ggctcaatta ataaagtgcc gttaaaaccg
    20701 attttgtgtt tatgttccac cactaactgc ataaagcgac cgatttgttc acgctcacgt
    20761 tttaagtcag tgttgagtag ggtttcataa ccttcacgtc cgccccataa tacataattt
    20821 tcgccgccta agcgtttggt tgcgttcatt gcggtaaaga cttgtgctgc cgcccaagca
    20881 aagacttccg gattcggatt ggttgaagca cccgacatat agcgaggatt ggtaaagcag
    20941 ttcgccgtac cccataataa tttcacgcct gtttcagctt gtttttgctc taaaatatcc
    21001 acaatagtgt tgaaattgtg ctgatattct ttgaaattgt tgccttccgg tgcaacatcc
    21061 acatcgtgga agcagtagta aggaatgcct aatttttgga aaaattcaaa ggcaatttcc
    21121 gctttttgct tcgcaccttg cagtaaatcc cccgtttttt gccagcttct gtcaagcgaa
    21181 cccacgccaa acatatcgtt acccgtccag cagaaggtgt gccaatagca aaccgctaac
    21241 cgcagatgtt ctgccatcgt tttgcctaaa accacttcat ccgggttgta atgtttgaat
    21301 gcaaacgggt tggtggaatt agccccttca tattgtactt ttgagatttt gtcgaaatag
    21361 ttagacataa taatgctcct atgaattgga aaaataatct ttcggtaaca tcatcggaaa
    21421 attatgcaaa accttcaatt acgatatttc gtttttggat ttcgattatt ggttaatgtg
    21481 gcgtagatca caaaagtgaa aaatcataat gatattaata aatatgataa ttgaacttca
    21541 tttgaaataa gcccagactg cttacgggcg aaaaagatgc tcacattttc ataaccaatg
    21601 aggtgaacta tgaaacttaa gtctaaatta ttagccgttg ctacggcgac tttaatggta
    21661 ctcagcaatg cttctgttgc taaagatcta aaaatcggta tgtcaattga tgatttacgc
    21721 ttagagcgtt ggcaaaaaga ccgagatatt tttgtgaata aagcggaaag cttaggagca
    21781 aaagtcttcg ttcaatcggc aaatggcgat gcaaccgcac aaatctcaca aattgagaat
    21841 atgttgaata aagatattga tgtattggtg attattccgt ttaacggcga agtgttatcc
    21901 aatgtgattg ccgaggcgaa gaaagaaggt gttaaggtac ttgcttacga ccgcttaatc
    21961 aataatgccg atgtggattt ttatgtttca tttgataatg aaaaagtagg tgaattgcag
    22021 gctaaaagca ttattgggca aaagccggag gggaattatt tcctaatggg tggttcacct
    22081 gtagataata acgcgaagct gttccgtaaa ggtcaaatga aggtgctaca accgttaatt
    22141 gacagtggaa aaattaaagt ggtaggcgat caatgggtag attcttggct tgctgaaaaa
    22201 gcattacaga ttatggaaaa tgcactaact gctaataaaa ataatattga tgcagttgta
    22261 gcttcaaacg atgcaaccgc aggcggtgca attcaagcgt taagtgccca agggttatcc
    22321 ggcaaggttg caatttccgg acaagatgca gatttagccg caattaaacg tattattgcc
    22381 ggtacgcaaa cgatgacagt gtataaacca attaccaatt tagccgacaa agctgccgaa
    22441 attgctgttg cattaggtaa agatgagaaa gtagaaatga atgctcaatt aaataacggt
    22501 atgaaagaag taccggcata tttattagag ccggttgttg taactaaaga aaatattgat
    22561 gacacagtaa ttaaagacgg cttccatacc aaagatgcag tatataaata aatcacttta
    22621 atttttctag atggcgaggc ttcctcgcca tttttgaaaa taaggggcta actaagtatg
    22681 gcgaaattat tagaaatgaa gaacatcact aaaaaattcg gtgaggttgt ggcattaaat
    22741 aatatttcaa tttcccttga aaccggcgaa atactttctt tatgtggtga aaatggttca
    22801 ggcaaatcaa ctctgatgaa agtattatgt ggaatttatc ctgccggtga ttatgaaggg
    22861 gaaatctatt tttccggcga aaaattgatt gccagaaata tcaaagatac tgaagaaaaa
    22921 ggcatttcga ttattcacca agaattgacc ttagtaaaaa atatgtcgat tttggagaat
    22981 atgtttttag ggaatgaaat taccaaatca gggattacag atgacaatga aatgtatctg
    23041 cgttgtaaaa ccttacttga acaagtgcag ttggatattg acccaaacac caaagttgga
    23101 gagctaggtt tagggcaaca acagttggtt gaaattgcca aagcattgaa taaacaggta
    23161 cggttgttga ttttagacga gcctaccgcc tcgttaaccg aaaaagaaac cgagattctg
    23221 ctgagtttaa ttaaagattt acaagctcac aatattgctt gtgtttatat ttcacacaaa
    23281 ttgaatgaag tgaaagccat ttccgacaaa atctgtgtca ttcgagacgg cgaacatatc
    23341 ggtactcgca gtgcagaggg aatgagtgaa gacgatatta ttacgatgat ggttggacgt
    23401 gagattacct cgctctaccc acacgagcca cacaatattg gtgaagaagt ccttcgagtt
    23461 gaaaatttaa ccgcttggca cccaaccaat acacatatca aacgggttga taatgctaat
    23521 tttgtactac gccaaggtga aattttaggt attgctggtt tggtcggttc agggcgaacc
    23581 gagatggcac aatgtatttt tggctcttac caaggcaaat atcaaggtga tatttttctg
    23641 cataagcaac cgattaaaat caaaaattgt gcacaagcga ttgaaaacca tattgtgatg
    23701 gtgccggaag atcgcaaaaa acacggcatc attccaatta tgggggtggg taaaaacata
    23761 actctctctt cattaccgca attttgtttt ggcaaaaaag taataaatga accgctggaa
    23821 gaaaccatta tcaaccaatc tattgcaaaa ctgaaagtga aaacttcctc gcctgaatta
    23881 gcaattggac ggttaagtgg cggtaatcag caaaaagcaa ttttggcaaa atgcctattg
    23941 cttaacccta aaatcctgat tttagatgag ccgacccgtg gtatcgacgt gggagcaaaa
    24001 tatgaaattt ataagctcat caaccaatta gctaaagaag gtatggcaat tatcgtcatt
    24061 tcctccgaat tacctgaagt tttaggcatt agtgatcgtg tattggttat gcaccaaggc
    24121 aaaattaaag cagatttgat taaccaagac cttacccaag aaaaagtaat ggaagcggca
    24181 ctcaaggagt aacctatgaa taagttaaaa tcgattaatt tacaagttta tattatgctg
    24241 attgcaattg ttgtgattat gagctttttc tctattgcaa ctgacggtgc ttatttaagt
    24301 gccagaaata tctccaacct gttacgccaa acctccatta ccggtattct tgccatcggt
    24361 atggtatttg tgattatttc cgcagaaatt gatttatcgg ttggctcgct aatgggctta
    24421 ctcggtggat ttgccgccat cagtaatgta tggtggggct ggccgctctc gttaactatt
    24481 atagttactt taattttagg cgtcatgctg ggtgcttgga gcggttggtg ggttgcttat
    24541 caaaaagtgc cgtcctttat tgtaactctt gccggtatgc tggcgtttcg tggtgtattg
    24601 gtcggcttaa ccaacgggac aaccgtttca ccgattagca atgaaatgac aaccattggt
    24661 caaggctatt tgcctgatat ggtgggtatg attttaggta ctatcgggat attttgcttt
    24721 attgtttggg gtagctacca acgcaaagcc agacaaaaac tcaatcttac tgtgccttct
    24781 atgtcgaaag acacgctgaa atacggacta gttgcaatta tcgtattagg tgcgatctac
    24841 ctactcaatg attaccgtgg tgtgccattc ccggtattgg tgttggtgat tctagccatt
    24901 gccggcacat tcttggccag aaaaaccgcc ttcgggcgtc acatttatgc gattggtggc
    24961 aacattgatg ccgctcgcct ctcggggatt tcagttgaaa aagtcaaact tgcgattttt
    25021 gccttaaacg gcttattagt tgccattgca ggcttgattt taagctcacg tcttggagcc
    25081 ggcgcacctt ccgccgggca aaatgccgaa ttagatgcga ttgccgcctg cgtgattggt
    25141 ggagccagtt tagccggcgg tatcggtagc atttatggcg tagttattgg agcatttatt
    25201 attgctttgc tggataacgg tatgagtatg cttgatgtgc caaccttctg gcaatatatc
    25261 gttaaaggtg gaattctact gcttgcagtt tgggtagata ccatcagcaa gaaaaaagcc
    25321 taattggata acaagcggtc aatctcgact atccaacggg aaatccggca taatcgggct
    25381 aaaaatggga actatgttgc cagacatact caacaatttt accgtcaacg tcagattacc
    25441 aaaaatgacc gcttgtaatt tagaggagtg tttagagcgg aaataacatc ggaatcacaa
    25501 acaccgacac cagcatcacc agtacagtaa acggcacacc aactttaacg aaatcaataa
    25561 atttatagcc tgccggtgct aataccatcg tatttaccgg tgaagaaacc ggcgtcataa
    25621 aagcggcgga ggctgaaaca gcgaccgtca tcacaaaagg tgccggtgag tagccaagtt
    25681 ggttagcaat cgcaatggct atcggcataa ccaaaattgc agtcgctgtg ttggaaataa
    25741 aagcactgat aatcgctgtt actacaaata atactattag aacaaaatgt acatctaagc
    25801 cttgcattgc atcaagtaga agcctaacgg ttaaatccac accaccggtt ttttgtaaag
    25861 caatagaaaa cggcatcatc cccacaatca acacaatgct tggcatatga atcgaatcat
    25921 aagcactttt catatccaca cagcggaact tgcctaacat taagcaggca atcaacgctg
    25981 ccatcacgtt tggcacaatg ccggtaatca tcagcaacac catagtcagc actgagaaca
    26041 gagcgtgagg ggcttggctt aacgccggag gggcgttttt actttctgcc ggatctctaa
    26101 gcaagaagaa atctcgatga tcgtcgtcca tacggtgaat ttgttgccat acgcccatca
    26161 ccaataaaat atcgccgaat ttgagtggcg tatcgagcag ttcctcttgt atgatttcat
    26221 caccacgttt taagccgaca atgcttaaat ggtatcttga gcggaatttg agttcccgaa
    26281 tagttttacc gatacattct gcttcaggca taaccgaaat ttccgccata cccaccgagc
    26341 gatattgtga ggaaaagtat tcgcctttta gctcaatcgg gcgaagtttg agctgttcac
    26401 agcgttgttg gtaagtttca tcatcgaggg cagtatcaag cagtaaaata tctttcggct
    26461 ggaaaatttc gtttaccgag gcactgacgg taatttttct aaaccgctta gtgcgttgaa
    26521 ttgcaatgat gtttagccct tgctcaatcc gtaaattcag ttgcccgata gatttgccga
    26581 cacagtctga atctgcttcc accagcacca ttttggctcg ctctttaagt tgatactctt
    26641 caattaactg cgacattgaa aatttttgag cctgactgtg agtattgctt tgctcaccat
    26701 tatccaacca acggcgggca atcagcatat agccgatgcc catcactaaa ataattaatc
    26761 caatcggagt aaaactgaag aaattgaagc cttcaaaacc tgattttact aattcggaat
    26821 gagcaacaag gttgggtggt gtggcaatta aggtcatcat accgctgata agtccggcaa
    26881 cacttaacgg catcattaac cggcgaggag aaattcccat tcccgagcaa atggcaagca
    26941 ccaccggaat gaaaatcgcc acaatgccgg tggaactcat aaaagatcca agcccggcaa
    27001 tacagagcat tagcagcacc agcactttgg tttcgctcgc tcccgacacc cgcatcaacc
    27061 aatcgctgac ttggttcgcc acgccggttc gcaccaaacc ttctccgaca ataaagagca
    27121 acgcaatcag caccacgttt gggtcactta agcctgccaa cacttctttg actgataaaa
    27181 tattagtcag gctaaaaaac agcattacaa ttaaggcaac cacgtccata cgcaacttgt
    27241 tttggataaa ttgccaaatc gcaaatacca ataacgccat tacccaaaac agttcttgct
    27301 taagaaaatc cggcacaaaa gagagcaacg attgcataac catatcctcc aaaatagtta
    27361 gggatagatt acaccgcttt aagcaaagaa aaaagccgat aagatcaaaa agaaaggaaa
    27421 aagcaatcac gtacggcgtg aatgctcagt acaagcggtt agttttgacg aaatttttac
    27481 aatgggcttt ccacattcag ttgttcgtca atttcagtta ccgccaaaat caggcttgaa
    27541 cgtaccattt tttccaaccg catttgctgc atttgaaaga gcatcgaatc tttattcgct
    27601 gcactcgctt tcatattcag caattcattg ataggcaaaa aatcaatatg gtgcaaatct
    27661 ttggcaaatt tcactaccgc cgggtgagaa aatgcgaact cgtcttcttc ctcattcaaa
    27721 tgctgtttga cttcaaggaa aagcgagata tcttcaaaca ctttaggtga gatcaccccc
    27781 aacccaagca acacttttaa acgtacttca atgtcagcca gcggtccttg atgttcaaac
    27841 aaggaatcca ccacggattt taacgcaaag tccgttttgc gaaacactcg ttcaatcaac
    27901 tgttcaaccg ctttggcaaa gcgttgattg gcaatgctaa ggaaaccacg cagggtggtt
    27961 tcctcactga gtttgtcgat gtaatccatc atagtgtcaa gaattattga tataattcca
    28021 ccacttgagc aatgaccgct tggtcggtta aaccggtgta tttttccacc gctgccgcca
    28081 caccgtgatt tgcaataaat tcggcaagtt cgaccgcttg tgggtcttcc tcattgcgat
    28141 attgcaatgc catcaccacg cctttgacca agttttgata cggtaagcca tattccaacg
    28201 tgccacgcaa cggtttgatc aagcggtcgt tttcgctcag tttgcggatt ggctcacgcc
    28261 ctacacggtt tacgtcatcg tttaagtacg ggttggcaaa acgtttgagg attttttcga
    28321 tatacgctga atgggcttgt gggtcgaagc cgtaacgttt aatcagcaca gcaccgctct
    28381 cttccattgt ggctttcacc tgagttttga tttcctcaat cgcaatcgcc tctttaatcc
    28441 atttcacgcc cgcttgtttg cccaagtagg cacagattaa atgcccggtg ttcagggtga
    28501 acagtttgcg ttccacaaac gccatcaggt tatcggttaa ttccattcct ttgatgtttg
    28561 gaatgtcacc tttgaactgg gtttgatcca caatccactc gctgaactct tccaccgtga
    28621 cttccaacgg atcagcaggg ttcggctcgg caggtggtac aattctgtcc accgcactat
    28681 caacaaaacc aaccactttt tcaatttctg cttgctgctc ggcagttaaa tgctcaaaaa
    28741 ttttaccttt aaagaaagtt gtgccacgca ccatattttc acaggcgata atgttcagcg
    28801 gttgggtgtt gccactttcc acacgagcca ctaacgcttt ggcgaacagt ggggcaataa
    28861 agccaagcac attcgggccg actgcggtgg taattaaatc ggtgtttttc acttgctcaa
    28921 tcacggcatt ttcgtctttc gagttaattg ccgcaatgtt tttgacaatt tccacacggc
    28981 tgtcatcgcc cacgattttc acgccgtatt gcttgttttg gttgatttgg tcgatttgag
    29041 tttggttaat atcggcaaaa gtcacgaaaa tgcgagcatc agcaagcaat ttgccgataa
    29101 agccacgccc gatattaccg gcaccaaaat ggagtgcgtt cattgatgat tgttcctcta
    29161 taaaacgtag gggcgggtcc tgtgcccgcc ctaaattttg taggataatg ggcgggcaca
    29221 ggacccgccc ctacacaaca gggtgattat ttagataata atgctaacac tttttccacg
    29281 tcatttgttg aggtcagtgt tttcattgct tgttcatcgt ccagtgcgtt ggtaattgca
    29341 cttaaaattt ggatatggtc gttgcctttt gctgcaatac cgaccaccag tttcgccacg
    29401 ccgtcttctt catcggtgaa gcgaacgccg ttcgggtatt ggcagaccac gataccggtt
    29461 ttcagtacgc tgtctttggc atcagatgta ccgtgtggca cagctaagcc ttcgcctaag
    29521 taagttgaaa ccatttgctc acgggcgaac attgcatcta catagcttgg ttgaacaaag
    29581 cccgctttaa ctaactgctc accggcaaag cggatcgctt cttctttact gttagcttgt
    29641 aagcctaaaa agacttgggc tacttgcaat tttaaccctt cggcttgagg ttcttccacc
    29701 gggtttgcaa aattttgtgt attttgcacc gcttgttgtg gctggtggtt agccagtttt
    29761 gccactaagc tgtcatagaa cgcactgtct aagaagttag tgagcgataa gtgttgagcc
    29821 gttgccacac gttgtgttgc acgagcggtt aagtctttgt gggtaatcac cagttgtgcg
    29881 tcttgcggta agtcgttgat cgctaagttt tgtacttcaa tgtttaaacc tgccgcttgc
    29941 acttttttgc gtaacatact cgcacccatc gcacttgaac ccataccggc atcacacgct
    30001 acatagattt tgttgatgtt accatttact acgcctttgc tttctgcttt catcgcttga
    30061 gtttgtgctt gtgcatcttc caatgaggct tcaccttttt gggttttgag taagattgac
    30121 gcaatcgcaa aagtcacggc acaagaaaga atcacggagg caacaactgc aaagtgagca
    30181 cccggtgcgg tcattgctaa aatcgcaaaa atagaacccg gggaagccgg tgcgattaaa
    30241 ccgccaccta ataatgagtt ggttaaaacg ccggttgcac cgcctgcaat cactgcaaga
    30301 attaagcgtg ggctcattaa cacatacggg aaataaattt cgtgaatacc gcctaagaag
    30361 tgaatgattg acgcactacc agcggtttgt tttgctgtgc cacgaccaaa gaacatatag
    30421 gcaagcaaga taccaaagcc cggacccggg ttcgcttcaa tcaagaacag aatagatttt
    30481 cccacttctt gtgcttgtgc tgtacccaat ggcgtgaaca caccgtgatt gatcgcattg
    30541 tttaagaata ggattttcgc cggttcaacg atgatagagg ttactggcag aagaccagct
    30601 tcaaccaacg cccccacacc tgcacctaat gccgcagaga tttgggtgac gatacctcca
    30661 atgaaagcaa atgaaagcat tgccaaaatc ataccgatga tcccgaccga gaagttgttt
    30721 accaacatct caaaaccgct ttttactttg ccgtcaatcg ctttatcgaa ggttttgatc
    30781 gcccagccgc ctaatggacc tacaatcatc gcacctaaga acatcgggat ttcagaaccc
    30841 acgataatac ccattgtagt aatcgcacct acaaccgcac cacgctcacc accgactaat
    30901 ttaccaccgc tgtaaccgat taacagtggc agcaagtaag taatcatcgg accgaccagt
    30961 ttagcaaaag tctcgttcgg caaccaaccg gttggaataa acagggcggt gataaagccc
    31021 cacgcaataa aggcaccgat attcggcatc accatattcg ataagaaacg cccaaaacct
    31081 tggactttca cttttaaatt agacatagaa acctcaaaaa aggagagaaa attagggttg
    31141 aaaaaatcgt gcttaaatta gcaccacttt caaaagttac aaaaatgttt ctctcataaa
    31201 tgtgaagtag atcacattaa atttttttgg gcatatttga aaatgtgatc tatctcacat
    31261 ttttggagta aagatggcgt aagcgtcctc gcttgtgcca agcataattc tatttttgcg
    31321 atctacatcg aaaaaataaa atgaattgct aaccctaact gttcaccgat attactatca
    31381 gcataaactg cactttagag gttcataatg agtagaaaat ataagtttta tgagaagagc
    31441 ggagcctatt ttgttagttt tgcaacagtt tattggattg atctatttat tcgagaagat
    31501 tattttcaaa ccattatcca atcattgaat tattgtcgaa aacaaaaagg gatgattttt
    31561 tatatggcta ctgcattatg ccaagccata ttcatttatt atttcaagca aaagaccaaa
    31621 acccgtcaga tttaataaga gattttaaaa catttacatc taaaatgttg attcagcaaa
    31681 ttaaaacaaa tccccaagaa agtagaaaag aatggttatt atggatgttt actcgggcag
    31741 ctaaacaacg aaataatgtc aagcaatacc aactttggca acatcataac caaccgataa
    31801 caatctattc tcagaaattt tttgatgaaa agctaaacta tattcacaac aaccctatcg
    31861 taagcggttt tgtatgcgag gcatttgaat ggaaatatag cagtgcaaga aattatgcta
    31921 acaacttacc tgttttatta gatattgata tatgtcagtg aacggcacaa gcgtaaacgc
    31981 ttgcgccatc gttacatcta taaattaact agagaactcc atcaatcccg ttactttacc
    32041 ctcatcattc actgcaatta atgagtgaat tttcagctct ttcattaaat cttcggcttt
    32101 ggctaaaaat tcggtatcgt taatggtttt tggattacgg gtcataattt cgtcagcggt
    32161 tttatttagg ctctccgccc cgaatttcgc taatgtgcgg cggatatcac catcggtaat
    32221 aatgccttcc aatttatcgt cttgcataat taccgccacc cccatacgcc cttcgttcat
    32281 cacagataaa cattcggtaa aggtggtgtc taagctggcg gttggcactt tacgcaccat
    32341 cacatctcgc actctgttca ataatttacg accaagactg ccacccgggt ggtagcgggc
    32401 aaaatcttca gggcggaaat cacgggcttt cattagcgca atggctaacg catcgcctaa
    32461 agccatcgtt accaaagtag agctggttgg agctagatta ttcaggcagg cttcacgctc
    32521 tacaccaata tttaaaatca catcggcatt tcgcccaagt gtggagtaag gattacctgt
    32581 catcgcaata attttattgc cgaaattttt caggcttgga atcagtttat tcacatcatc
    32641 agtttcacca ctgttagaaa tcagaattac catatcaatc ggtttcagca ttcccaaatc
    32701 gccgtgaaaa gcctctgtcg ggtgcaagaa aaagctcggt gtaccggtgg aggcaaaagt
    32761 tgccaccatt tttttgccaa ccagccccga ttttccaata ccgccaacaa ccactcgccc
    32821 ttgacaagcg agtatcatat ttaccacctc attaaattct tcagaaagtc gatggtttag
    32881 cgtaataatc tgctgagcat agaggtttaa cgtttctttt gcactgtcta aatgattcat
    32941 ttttacgccc ttatacaact aacagctcaa tccctttcgc tttaatctgt tctctcattt
    33001 cttgagataa tccttcatcg gtaatgatag tatgaatttt ttctaaccca cacacaatat
    33061 tcggactttt acgtccaaac ttactggagt cggcaagtaa gacgatttta tttgccgcat
    33121 cacacattag cgaactgact ttatatactt cattgaaagt cgttaatcca acgtctaaat
    33181 ctagtccgtc tgtgccaata aagagtatat caaaatttga accaataaaa gcggattcag
    33241 caaaataacc gtgaaatgaa gctgatttct cacgaaatgt accaccggaa atcagtaagt
    33301 tataggattt attgagtttc aaaatctcat tgaaaatagt taaactattt gtcattaaag
    33361 agaggttatc aaatgctttt aaatggggga tcatttgtaa cactgtgctg cctgcatcaa
    33421 aaataataga gtttccctca ttaattaact ctgcagcttt ttgcccgata gcttgctttt
    33481 gttgaagatt aatgccggtt ttctgtgcaa gcggtttatc gtctttgtcc tctttattga
    33541 ttttctcttc ccgttcaaga atttcttcat caattaagac tacactgcca taagtacgca
    33601 agactttctt atcttcttca agtgaagtta aatctttacg aatggttgca ccagttagct
    33661 taaaatagtc tgccagcacg tccacttcgg ttctaccgtg ctgagctaaa taggctaaaa
    33721 tttgctgtct tctttcaaaa ggtttcattg ttcctccaat ttagcaaaga ttggagcgag
    33781 ctaatctgtg ctaatgctgt tttaattttt caatgacatc tagtagcgat gctattcttt
    33841 tatcggcaat tgaaaatttt tcattttgat aatcggtatt caccaaaaat gtagttaaat
    33901 tagcggcttt ggcggcaatt aagccggtta cactgtcctc aataacaata cactcttgtt
    33961 tttcaatgcc taattttttc actgcactca aatagaccgc agggtgtggc ttgccatatt
    34021 cttcgtccat tgcactgcat cgaatcggga aataatccca cagttttaag cgatcaaaca
    34081 ccgctttaat caccaccggc ggcgatgagg ttgcaacggc taacttgatc tgattagatt
    34141 ttaagaaatc caataattca tataaacccg ttaatgcttt gccgtgttgt tcaatcgcag
    34201 cacaaccgtg tgccaaaatg gcttcactta atgcttggtt ggaaacagat aactgaaatt
    34261 ttttaatcca agtgtcgctc aactcatcaa tccgcttacc tctggtgagt tgttcgcaat
    34321 cttgctcggt gatattaata cctaagtcgg ctaatactgc aatttgagcc tctgcccatt
    34381 ggggttctga atcaatcatt accccgtcca tatcaaagat gacactattg atctgcatat
    34441 ttattctcca ttatctcatt tttaactaaa aaaatattca aaatgaaata aaaaatcgca
    34501 ttatttttga tctgagcaac tatatccgga agatatcgcc acttttaagg caaattgtga
    34561 acgtttatcg cttggaaaga ttttttccgg cacaatttga tcaagagaca aaccaatcac
    34621 agacgctaat ttctgcggtc tggcaaagac ggaaaatcct ttcatacaaa ggctatctac
    34681 cacttttttc tcatcatcaa acgccaacac aataaccgat ttaggattaa aacgaccact
    34741 attacgccca accgttactt tgcctttctt actgatttcc ataaaggctt ggttaaaggc
    34801 tttaatttga agccaaccca aaacggcttg taacagccac attatcattg ccaatataat
    34861 cagaagtgta attgaatcca tcattgctcc ttaataaaaa gccacagagc ctaaacgtac
    34921 ctgcgatttc aaaacaatac gctttcccct gtggcatatt aaccggtgtg gcgaattaac
    34981 aagcggttta ttttagtcat tttttgcaaa ttgttgtaaa aaaatcgaca aatttgaccg
    35041 cttgtttgct tagaacatta cctgaccacc ggtaatatta atagactgtc ctgtgcaata
    35101 agctgcctct tcgctggcat agaattttaa gacattcaac acatcttgat aatcacagcc
    35161 acgttttaaa ggcactttat caatataaac ttgctctact tcgctttccg gaatgccgag
    35221 ttttgccgca tattgcggaa ttaacgattg gaacatcggc gatttcaata aattgcctaa
    35281 cattaatgaa tgcacggtaa tgcctttatc tgccaagtct aatgctaacg attgtgttaa
    35341 accaacacca ccaaatttcg ctgcactata accggaatta tacttactcc ctactttacc
    35401 cgatttagaa ttaatttgaa tgatacgccc tttaataccg tcacgaatca ttaagcggga
    35461 gaagtgtttt gcggttaaga aataaccggt taaattcact tttaccgaca aatcaaaatc
    35521 gtttaagttg aaatcccaaa taggcgatgc tttcgctgtg cctgcactgt aaaccaatac
    35581 atcggcacgc ccgaatacgg tatctgttgc tttagctagt gcttcaacgc ttggttcatc
    35641 agccgcatcg acttgcaccc caatcgcatt tccttcgcct tgtttggcat taatgtcggc
    35701 tgccactttt tgtgcatttt cgccgtttga gtcagcaacc accacacgat aaccggcatc
    35761 tgccaagcct tcagataaaa aagctccaag tgtttgaccg ccgccaacaa cgatagcgac
    35821 ttttttttca ttgttcataa tgtattcctc taaattttca atttgaaatt atttttaatc
    35881 cgtcattaat cacgcttgat aatcaaggtt gagttctctg ttaagccttg cggcggtgtt
    35941 ccgataacgt gaacgcttcc cggaaattcc gcatcatttg ccccgtcaaa acggaaggta
    36001 atgtgtccga gggcggataa gttttcagat gcaacgctac caactgccgt aatcggataa
    36061 gctacgccat caaattcagc gatatcgcct acttctaaag ggctacttaa ttcagatgga
    36121 ttatgaatga agcagtaatc ttctaaatct gccggtgcgc cttgtttaaa agtgattaac
    36181 atatcgtctg ttaatgattc ctgagcaaaa ttcccgattt tggtaaaggt cgtttgataa
    36241 ataatcgtca tataaatgtt ctctcgtttt gacaagcggt gcattttgca aaaaattttt
    36301 caaattccac cgcttgtatc gtggttaatt attggtagat gaatgcggaa actgcccacg
    36361 caatcagcac ggttggtgca ccggttaaga aacggctgac taatactgac ggtacaccca
    36421 cccgtacggt atcttgtttt gcttccgcca ttgaaagacc cacaggaata aaatcacaag
    36481 cggcttgagc attaatagca aagagtgccg gcagtgctaa atgtggcgga atattgccta
    36541 aaccgatttg cgtaccgact aacacgccga taacttgtgc aatcacggtt cccggcccta
    36601 agaatgggga aaggagaggg aaggaacaaa tcaacgccag tgtaactaaa ccgattgggc
    36661 tgtttgccag aggggtcaag ccgtgggcaa tcacatcacc taaacctgac gcaatgatga
    36721 tcccgattaa cgcagaaaca aatgccataa acggtaaaat ggttttaagc accgtatcaa
    36781 tagtgtctcg tccggcttgg aagaataacg ccgccaccga tcccattccc ataccgattt
    36841 ttgctaataa accatcactt tgttcggtga tttttttgct ggagtcatac tcttttgccg
    36901 ttgctgtcgt tgatgaagtt ggttttgctt gctctgttgc cacaggcaca cttccatcgg
    36961 catcaattaa gcgaatattg ttttctttca ccgctgaaac ataaatatct tccacaataa
    37021 attctgctaa agggccggat ttaccggtgg agtgaatgtt aatggttgga atacggcgtt
    37081 ttgggtaaag cccacagcgt aataccccac cgcaatcaat aatcgcaatc ccgatttctt
    37141 ctgccagcgg ttcgccttct ttaaaaccat caaccgcttc ccagccggtt aattccacca
    37201 atttattaac aatcgcaggg cgagtgccgc cggtcatata aagcactttt ttgccttcca
    37261 caacaggtaa tgttaatgga ccaccccaac caccgttgcc tttttcaatg taaatcgctt
    37321 tgttgctcat aatctattcc tctgtatttc agttacttgg ttagtgggat aaatgtactt
    37381 ctctatctaa ggtgatcccc attcgttttt caaagaatgc ggtggtgaag tctgttatcc
    37441 agccacggaa gaaattggta aacataccga ctaataaata actgatggct aaaggcccaa
    37501 gtggtaagcc taaggtggtt aaaccgctgg caatacctaa ataaacgaat aattcacccg
    37561 ggttgatgtg agggaataag ccgttcatag agtggcaact ataagaggct gcggcgtagt
    37621 agcttggttt gtaacgctcc ggtaagaaac gtcctaagct taatgtcatc gggttacaga
    37681 aaacgaaagt gccgatcacc ggtaagatca aataacgtga aatagggttt ccggcactac
    37741 gttgagcaag tcgttcaatc cgatcttgcc ctacaaattt aatcagggca ttcattacaa
    37801 ccaataatga aattaagagt ggcaaaatac cgtttatcat accgactaag gtttcaccgc
    37861 ctttttggaa caggccgata aaccattctg ctccgtgtgt aattgcttca atcataccga
    37921 tctccgtttt tcaaaataaa atatttttct ttcatctctg ttat
//
LOCUS       DANLUT010000009        36550 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLUT010000009 DANLUT010000000
VERSION     DANLUT010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 36550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36550
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            40..975
                     /gene="pheS"
                     /locus_tag="PXB38_000387"
     CDS             40..975
                     /gene="pheS"
                     /locus_tag="PXB38_000387"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL5352751.1"
                     /translation="MDQNLEALEEFRVEYFGKKGHFTTLMQELRNIAAEERPAIGAKI
                     NEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKTELGGLHPVSITIERVVK
                     FFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFWFDANRLLRTQTSGVQIR
                     TMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKKANFTELKGLIHDFLKAF
                     FEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMVHPNVLRNVGIDPEEYSG
                     FAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            1023..3410
                     /gene="pheT"
                     /locus_tag="PXB38_000388"
     CDS             1023..3410
                     /gene="pheT"
                     /locus_tag="PXB38_000388"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL5352752.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFASLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEASEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTAIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            3468..3764
                     /locus_tag="PXB38_000389"
     CDS             3468..3764
                     /locus_tag="PXB38_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL5352753.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            3803..4324
                     /locus_tag="PXB38_000390"
     CDS             3803..4324
                     /locus_tag="PXB38_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5352754.1"
                     /translation="MKLTKRWLSLGCLLATTAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            4340..5383
                     /gene="degS"
                     /locus_tag="PXB38_000391"
     CDS             4340..5383
                     /gene="degS"
                     /locus_tag="PXB38_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL5352755.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            5392..6066
                     /gene="cmk"
                     /locus_tag="PXB38_000392"
     CDS             5392..6066
                     /gene="cmk"
                     /locus_tag="PXB38_000392"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL5352756.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRAVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            6158..7825
                     /gene="rpsA"
                     /locus_tag="PXB38_000393"
     CDS             6158..7825
                     /gene="rpsA"
                     /locus_tag="PXB38_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL5352757.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
     gene            7954..8235
                     /locus_tag="PXB38_000394"
     CDS             7954..8235
                     /locus_tag="PXB38_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL5352758.1"
                     /translation="MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIE
                     VRGFGSFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            8272..8559
                     /locus_tag="PXB38_000395"
     CDS             8272..8559
                     /locus_tag="PXB38_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL5352759.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            8563..9759
                     /gene="lapB"
                     /locus_tag="PXB38_000396"
     CDS             8563..9759
                     /gene="lapB"
                     /locus_tag="PXB38_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL5352760.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            9783..10475
                     /gene="pyrF"
                     /locus_tag="PXB38_000397"
     CDS             9783..10475
                     /gene="pyrF"
                     /locus_tag="PXB38_000397"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL5352761.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            10558..10869
                     /gene="yciH"
                     /locus_tag="PXB38_000398"
     CDS             10558..10869
                     /gene="yciH"
                     /locus_tag="PXB38_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL5352762.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            10972..13134
                     /locus_tag="PXB38_000399"
     CDS             10972..13134
                     /locus_tag="PXB38_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL5352763.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELMEYAQ
                     NVKPSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGFKTDEKVRLKAVELIKQNANAELANLAVNVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYAENKAIIQQLFAKYVRTLSENMENPSFQQYQA
                     WAEKYQFSNEEMNSWKNTFITRLFDNPEPTFQLWRDEQIKLLNTDNLTERRLRMAIWQ
                     QTALNEWLDLLSTEAKGKTEWRYWAAKEEKNEAKRKADFENLAKERGFYAMLAAQQLG
                     IIYQIPMLEVPELTQTQLELYENQLARIQELRELGQFEQARRVWIDWLKNIKAEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQIKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMRYSDINDKNGLKMFYQEELTRKY"
     gene            13187..13263
                     /locus_tag="PXB38_000400"
     tRNA            13187..13263
                     /locus_tag="PXB38_000400"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13221..13223,aa:Met,seq:cat)
     gene            13490..13951
                     /gene="rimP"
                     /locus_tag="PXB38_000401"
     CDS             13490..13951
                     /gene="rimP"
                     /locus_tag="PXB38_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL5352764.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDCQFAFGNIQKANLVPVFNF"
     gene            13972..15468
                     /gene="nusA"
                     /locus_tag="PXB38_000402"
     CDS             13972..15468
                     /gene="nusA"
                     /locus_tag="PXB38_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL5352765.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            15453..18020
                     /gene="infB"
                     /locus_tag="PXB38_000403"
     CDS             15453..18020
                     /gene="infB"
                     /locus_tag="PXB38_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL5352766.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            18105..18485
                     /gene="rbfA"
                     /locus_tag="PXB38_000404"
     CDS             18105..18485
                     /gene="rbfA"
                     /locus_tag="PXB38_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL5352767.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            18488..19411
                     /gene="truB"
                     /locus_tag="PXB38_000405"
     CDS             18488..19411
                     /gene="truB"
                     /locus_tag="PXB38_000405"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL5352768.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            19414..20508
                     /locus_tag="PXB38_000406"
     CDS             19414..20508
                     /locus_tag="PXB38_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL5352769.1"
                     /translation="MKSTIFTLPLAIITLALAGCSSDNQESYAGLNLDAKYSKSRSVS
                     HFNDYVHFLKQKAAGAGVSAKTLNAQKFIHYNARAVQLDQQQAARRRDPNVPPPPPNP
                     SGVTHYLNKVLTQAKVDQASERWYEYNSQLTHASQKYGVQKEYILALWGMESSFGRNQ
                     GDFDVLSVLATLAFDGRREKLFTQEFVNAMKMLDDGTIKRYELLGSWAGAMGQTQFMP
                     TSYLTYAADGNNDGKKDIWENEADAFASIANYLSTVGWDNQLPWGVEVKLASPMDLSF
                     AGLETNKAKTLAEWQALGIYLAYPNGQESAKLAQLHGKEVWLIRPDKEAGRAFLVSNN
                     FRTLMDWNKSNNFGISIGKFADRILASVGQ"
     gene            complement(20546..21070)
                     /gene="tadA"
                     /locus_tag="PXB38_000407"
     CDS             complement(20546..21070)
                     /gene="tadA"
                     /locus_tag="PXB38_000407"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL5352770.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVQGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(21152..22957)
                     /locus_tag="PXB38_000408"
     CDS             complement(21152..22957)
                     /locus_tag="PXB38_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL5352771.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSNSASNANPFEGRGRRG
                     NDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(23160..24083)
                     /gene="nlpI"
                     /locus_tag="PXB38_000409"
     CDS             complement(23160..24083)
                     /gene="nlpI"
                     /locus_tag="PXB38_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL5352772.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(24164..26314)
                     /gene="pnp"
                     /locus_tag="PXB38_000410"
     CDS             complement(24164..26314)
                     /gene="pnp"
                     /locus_tag="PXB38_000410"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL5352773.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENL
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(26576..27856)
                     /gene="phoR"
                     /locus_tag="PXB38_000411"
     CDS             complement(26576..27856)
                     /gene="phoR"
                     /locus_tag="PXB38_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL5352774.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(27859..28545)
                     /gene="phoB"
                     /locus_tag="PXB38_000412"
     CDS             complement(27859..28545)
                     /gene="phoB"
                     /locus_tag="PXB38_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL5352775.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLITHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(28629..29399)
                     /gene="pstB"
                     /locus_tag="PXB38_000413"
     CDS             complement(28629..29399)
                     /gene="pstB"
                     /locus_tag="PXB38_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL5352776.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(29409..30257)
                     /gene="pstA"
                     /locus_tag="PXB38_000414"
     CDS             complement(29409..30257)
                     /gene="pstA"
                     /locus_tag="PXB38_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL5352777.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMLSYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(30254..31213)
                     /gene="pstC"
                     /locus_tag="PXB38_000415"
     CDS             complement(30254..31213)
                     /gene="pstC"
                     /locus_tag="PXB38_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL5352778.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(31294..32331)
                     /gene="pstS"
                     /locus_tag="PXB38_000416"
     CDS             complement(31294..32331)
                     /gene="pstS"
                     /locus_tag="PXB38_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL5352779.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKVNYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            32516..34762
                     /gene="parC"
                     /locus_tag="PXB38_000417"
     CDS             32516..34762
                     /gene="parC"
                     /locus_tag="PXB38_000417"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL5352780.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLYILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPIEDVTVI
                     LSEKGWVRCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGATVQQVLMANSETKVLMASDSGYGFICTFEDLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDIDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(34833..36185)
                     /gene="lysC"
                     /locus_tag="PXB38_000418"
     CDS             complement(34833..36185)
                     /gene="lysC"
                     /locus_tag="PXB38_000418"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL5352781.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
BASE COUNT        11060 a         6883 c         8225 g        10382 t
ORIGIN      
        1 aaagatttaa ctaataaagc acgtgaagct ttagataaga ttgatcaaaa tttagaggct
       61 ttagaagagt ttagagtcga atattttggt aaaaaagggc attttacaac gttaatgcaa
      121 gaattacgca atattgcagc ggaagaaaga ccggcaatcg gagcaaaaat taatgaagca
      181 aagcaagttg tgcttgatgt gttaaatgcc aaaaaagaag aatgggaaca agctgtatta
      241 aatgcaaaat tagctaatga gagcattgat gtttcactgc cggggcgtaa aactgaatta
      301 ggtggtttgc accctgtttc tatcactatt gagcgtgtgg tgaaattttt ctctgaatta
      361 ggttttaccg tagcaaacgg acctgaaatt gaaaccgatt actataactt cgatgcgtta
      421 aacattccgg atcatcatcc ggctcgagcg gatcacgata cgttttggtt tgatgccaat
      481 cgtttattaa gaacccaaac ctcgggtgtg caaatccgta caatggaaaa tgtaaaaccg
      541 cctatccgta ttgtggcacc ggggcgtgta tatcgtaatg actacgacca aacccacaca
      601 ccgatgttcc accaaatcga attgttatat gtggataaaa aagcaaactt taccgagtta
      661 aaaggcttaa ttcacgattt tctcaaagca ttctttgaag aagatttaca agtgcgtttc
      721 cgcccgtcat tcttcccatt cactgagcct tctgcagaag tagatgtaat gcgtcaaaac
      781 ggcaaatggt tagaagtgtt aggttgcggt atggtacacc cgaatgtgtt acgcaatgta
      841 gggattgacc ctgaagaata tagcggtttt gctgtgggaa tgggcgtcga gcgtttaacg
      901 atgttacgct acaatgtcac ggatttacgt tcattctttg aaaatgactt acgtttctta
      961 aaacaattta agtaatacaa gcggttaaaa atttagaaaa ttttacaaat aggatagaaa
     1021 taatgaaatt caatgaatct tggttgcgtg aatgggtaaa cccagcaatt agcacagaac
     1081 agttatgcga ccaaattaca atgttagggt tagaagttga cgatgtagag ccggtagctg
     1141 gtgcgttttc gggtgtagtt gtgggtgaag tggtggaatg cgcccagcac ccggatgctg
     1201 acaaattgcg tgtcactaaa gtgaatgttg gtggcgaacg tttattagat attgtttgtg
     1261 gtgcaccaaa ctgccgtcaa ggtttaaaag tggcttgcgc tgttgaaggt gcagtgctac
     1321 cgggcgattt caaaattaag aaaaccaaat tgcgtggtca gccttcagag gggatgttat
     1381 gttcttactc agaacttggg attaaagaag atcatagcgg tattattgaa ttacctgctg
     1441 atgcacctat tggtcaagat ttccgtgaat atttaaattt aaatgatgtg gcgattgaaa
     1501 tcagccttac gccaaaccgt gccgactgct taagcattgc cggcattgct cgtgaagtgg
     1561 gggtgattaa ccgtgtcgat gtgaaagctc caactattac agatgtaaaa gccacgattt
     1621 cagataaagt ttcagtggaa ttacaagcac cggaggcttg ccctcgctat ttagcccgtg
     1681 tggtgaaaaa tgtgaatgtc aaagcgacat cgccactttg gttacaagag aaattacgcc
     1741 gttgtgggat tcgctcaatc gatccaatcg ttgatattac taacttgagc cttttagaat
     1801 tagggcagcc aatgcacgcc tttgatgcag cgaaaattga aggtggcatt caagtgcgta
     1861 tggcaaaaga aggcgaagaa ttggtattgc tagatggcac aaacgctaaa ttacaatcga
     1921 ataccttagt gattgctgat agcaaagggg cattggctat ggcaggtatt ttcggtggcg
     1981 aagccagcgg ggtgagcgag aatacgaaag atgtggtgtt agagtctgca ttttttgctt
     2041 cattagcgat taccggtcgc gctcgtcaat atgggttaca taccgacgca tcacaccgtt
     2101 ttgagcgtgg ggttgatcca gaattaactc gtcaagcaat ggagcgtgca acggcattat
     2161 tactggaaat ttgcggcggt gaagcaagtg aaattgtgga agccgtgagc caagaaaacc
     2221 taccaaaacg caatactgtc acgcttagac gcagtaaatt agattcggtg attggtcatc
     2281 atattgacga tgcaacggta accgatattt taacccgctt aggcttgaac gtaacatttg
     2341 cggataatag ttggacggca attgctccaa gttggcgttt tgatattgaa attgaagaag
     2401 atttaattga agaaatcgcg cgaatttatg gctacaacag tatcccaaat aattcgccac
     2461 ttgctcattt aacgatgaaa ggtacgccgg aaaaattact ggaagcaaac cgtattcgta
     2521 tggcattggt agatagtgat taccaagaag tgattactta tagctttgtt gatccgaaaa
     2581 aacaatcatt attgcaccca cagcaagaag ccttgatttt accaaacccg atttcaagtg
     2641 aaatgtcggc aatgcgtgtt tctcttttaa ccggtttgtt ggacactatc gtgtataacc
     2701 aaagccgtca gcaaaaccgt gtgcgtattt ttgaagcagg tctacgtttt attccggata
     2761 gcaatgcgga atcaggcgtg cgtcaagaat ttgtttttgg tgcggcgatt gtaggcgata
     2821 aacgtccggt acattgggaa aacaaatcag aagcagccga tttctttgat ttaaaaggcg
     2881 atattgagcg tattctttct ttaaccgcta tccgccacga tctgcaattt gtcgcaaaac
     2941 agttcccagc attacacccg gggcaatcgg ctgcgattat gcttgatggc aaagaaattg
     3001 gttttatcgg aactgttcac ccgtcaattg tgcaaaagtt tggcattaaa ggcaaaccga
     3061 ttgtatgtga aattctagca tcagctattg cagagcgtcc ggttacacaa gcgggcgaaa
     3121 tttctaaatt tcctgcaaat aaccgtgata ttgcggtagt ggttgatgaa tctgttcctg
     3181 caggtgaggt gttagaggct tgtcgtaaag ctggtggtaa taaattagtg gcagtaaatt
     3241 tatttgacgt ttaccgtggt tcgaatttag aaagtggtaa gaagagttta gccattagct
     3301 taacggttca agataatgaa aaaacattag aagaaaatga aatcaatgcg gtaattcaag
     3361 cggtattagc tgaattagca acacgtttca atgcggtact tcgtgattaa tcagtaaaat
     3421 atggctgatt tattttatca gccataacaa taaactaagg ataaatgatg gcgcttacca
     3481 agattgaaat tgcagaaaac ctgattgaaa aatttgggtt agaaaagcgt gtagcgaagc
     3541 aatttgttga attgttcttt gaagagatcc gatcctccct cgaaaatggt gaagaagtga
     3601 aattatctgg ttttggtaat ttttcactga gagaaaaaaa agctcgtcca ggaagaaatc
     3661 ctaaaacggg ggaaaatgtg gctgtttcag cccgtcgagt agtagttttt aaagctgggc
     3721 aaaaattacg agaacgtgtt gagcaagcta gctcccaatc ataggggcag ttatattagt
     3781 tagatttaat gtggagtaat aaatgaaatt aaccaaacgg tggctttcct taggttgttt
     3841 gttagctact acagcgatgt tagtggcttg ttcaagttca gatacaacct ctaagtctca
     3901 agtaaaaagt aaagtttatc gttcaatata ccaatcagac ctttctgatc ctattatggc
     3961 aattagtcga ttaagtgaac atcaacacga atggaaaggc actcgctatc gtttaggtgg
     4021 caatagcaag gctggcatcg actgttctgg ttttatgcaa gtcactttta aagatctttt
     4081 tgggatagat ttgccgagaa ccaccacaga gcaggctaag gctggtgagc gtatatccaa
     4141 agacgaattg cgtacaggtg atttagtttt tttcaagaca gggcgtggtc caaatgggaa
     4201 acacgttggt gtttatgtaa aaaatgggca atttcttcac gcctcaacaa agggaggggt
     4261 gatttattct gatttggatt cgccatattg gtctaaggct ttctggcagg ctcgtcgttt
     4321 ataatttagg gtaacataca tgctgaaaaa aatcggacaa gcggtcatat ttggactttt
     4381 ttgtgcaatt ttaattttgt ttgtagctcc aattattcag agtaaaggga gttcgttttc
     4441 attatcagca ttcactcaaa aagagattgt aagctacaat gcagcggtta aaatagcctc
     4501 ccccgcagtc gttaacgtat atagccgaaa ttttagttct gaaaatgaaa catttgaagt
     4561 taagaattta ggttcgggtg tgattatgag tagcgatggc tatattttaa ctaacaggca
     4621 tgtgattgaa gatgcggatc aaatcgtgat tgctttgcaa aacggtgcta tttcgactaa
     4681 tgtaaaatta gtcggcgatg attctttaac tgatttagct gttttaaaaa ttgagggtga
     4741 gaatttacct actattccac aaaatccgga gcgcaaacta caaattggcg atgtggtgtt
     4801 ggcaattggt aatcctttga atttaggaca gagcattacg caagggatag tcagtgctat
     4861 tgggcgaaaa accttaacag aaagtggtag acaaaatttt attcagacag atgtttccat
     4921 taatcaaggg aactcaggtg gtgctttaat taatactgct ggtgagctaa taggtattaa
     4981 cactttgcgt tttgggaaaa atacgaatga attgtcagag ggcctaaatt ttgcgattcc
     5041 cattaatctg gcgaatcaaa ttatgagtaa gatcattaaa gatggccgag ttattcgtgg
     5101 ctattttggg gtaagtacag atttgcttga caccgcaaaa atgcaaggtt atgaaaaagg
     5161 ggtgatcatt gttaatgtag ataaaaatgg gccagccgca aaagcgggga ttcaagcagg
     5221 tgacttagtg cttaaagtcg gagatattga ggcattctct ccttctcaaa tgatggaaga
     5281 gcttgctgaa atgaaacctt atactacagt aaaagtattg gttcaacgtg atgaacaatt
     5341 acttaacttt gatgtaacta ttactgagtt acagactcaa tagggtagaa aatgaaaaaa
     5401 atagtgatta cagttgatgg gccgagtggt gcaggtaaag gaacgttatg tcatgcattg
     5461 gctgaaaaat tagggtttga ttttttagat tctggagcct tataccggat tactgcatta
     5521 agcgcaatta aaaaagaggt tccccttgat gatgaggaaa aactagcgga agttgggcgt
     5581 aatcttgata ttcaattttt gccagaaaat ggcgagattc aggtgatttt ggaaggagaa
     5641 aatgtaggcg acttaatccg aacggcagaa gcaggtcaaa atgcctctaa agtcgctgct
     5701 ttccctttgg tacgtgaagc acttttagaa cgccaaagag cctttagtag cgaaaaaggt
     5761 ctgattgcag atggacgaga tatggggaca gttgtgtttc ctgatgcaca aattaagctg
     5821 tttttagatg caagtgccga agaacgcaca aaaagacgtg taaaacagtt gcaagaaaag
     5881 ggatttaatg ctaactttga cgagatttta gccgagataa aagaacgtga ttttcgcgat
     5941 agaaatcgag cagtcgcgcc acttgttccg gctaaagatg cgttgctgtt agattcaacg
     6001 catttatcaa ttgaagatgt gattaaccaa gcattaaatc atatcgctca atacattaaa
     6061 ttttagtttg ttgcttcaca taggatttgt gtagctttta ttatcaaccc cgtttaacag
     6121 gacgttagat ggatgtttat ttttaagaag atttattatg tcagaattat cgtttgctca
     6181 actacttgaa gaatcatttg cagctacacc acgtttaggt gatgttgtta aaggtactgt
     6241 tgttgctatc caaaaaggct tagttattgt tgatacaggt ttcaaatctg aatctgcaat
     6301 cgatgcctca gaatttacta acgcacaagg tgaattagaa gttcaagtgg gtgatgaagt
     6361 agatgttgtt cttaaagctg tagaagacgg ttttggtgca acagtagttt ctcgtggtga
     6421 tgcaaaacgt aacgaagctt ggattgcttt agagaaagca tttgaagaac aagctacagt
     6481 tatcggtttc gtaaatggta aagtaaaagg cggtttcact gttgaattaa acggtgttcg
     6541 tgcattctta cctggttcat tagttgatac tcgtccggtt cgtgattctt taaacctaga
     6601 aggtaaagag tacgaattca aagtaatcaa attagatcaa aaacgtaaca acgtagtagt
     6661 atctcgtcgt gctgttatcg aaacagaaag caaccaagat cgtgatgcgg tattagcaaa
     6721 cttagttgaa ggttctgaag ttaaaggtac agttaaaaac ttaactgact acggtgcatt
     6781 cgtagattta ggtggcgttg acggtttatt acatatcaca gatatggctt ggaaacgtgt
     6841 taaacaccca agtgaagtgg ttaatgtagg cgatgaagtt actgttaaag tattaaaatt
     6901 tgacaaagac aaaactcgtg tatcattagg cttaaaacaa ttaggtcaag atccttgggc
     6961 tgtaattgct gaaaaccacc cggtaaacag caaattaact ggtaaagtaa ctaacttaac
     7021 tgactacggt tgcttcgttg agattttaga cggtgttgaa ggtttagttc acgtttcaga
     7081 aatggattgg acaaacaaaa acattcaccc atctaaagtg gttaacgtag gcgatgtagt
     7141 tgaagtaatg gtacttgaag ttgatgaaga acgtcgtcgt atctcattag gtttaaaaca
     7201 atgtaaagca aacccttggg aacaatttgc ggcaactcac agcaaaaatg ataaagtatc
     7261 aggtaaaatc aaatcaatta ctgacttcgg tattttcatc ggtttagaag gtggtattga
     7321 cggtttagtt cacttatctg acatttcttg gaatgtttca ggtgaagaag cagttcgtaa
     7381 ctacaaaaaa ggtgatgaag tagaagctgt tgttctacaa gttgatgcag tgaaagagcg
     7441 tatctcttta ggtatcaaac aattagaatc tgatcctttc acaaactttg tagatggtac
     7501 taaaaaaggt gcaatcttaa caggtaaagt tgtagaagtt gatgctaaag gcgttaaagt
     7561 tgaattggaa ggtggcgttg aagcatttat tcgtgcaaac gaagcaactg ctgagcgtgt
     7621 agaagacatc acttctgtta tttctgttgg cgattcaatc gaagcgaaat acaccggtgt
     7681 tgatcgtaaa tctcgcgtag ttaacttatc tgttcgtgca aaaaacgaag ctgaagaatc
     7741 agcagcaatt gcacaagtga acaaagagga agttgttgta cctaatgcat ttgctgaagc
     7801 tttcaaagca gctaaaggcg aataattagt atagactaat ctaaaatggg tatgttttga
     7861 acatacccat ttaaacttag aaatgccatt ttgaatactt attttcataa taaatgatta
     7921 ttcaaaatag aattaatttt tggtagaaat aatatgacta aatctgaatt aattgagagt
     7981 ttagcatcta aaaatccaag tttaccaatt aaaatggtgg agcattgtgt aaaagagctt
     8041 ttagagcagt taacggctac tttagaagaa ggtgaaagga tagaagtaag aggatttggt
     8101 agtttttctc tacattatcg gcagccgcgt ttaggtcgca atcccaaaac aggagaaagt
     8161 gttcttttag gcgcgaaata tgtaccacat tttaaagctg gtaaagatct aaaagagaga
     8221 gttgatctgc tttaagtctt attaattcaa taatcgtagt aaggagatta tatgattaag
     8281 tatattttag gtattttaat tgtgattgca gttattattg tcgctgttac gattggtgcc
     8341 aataatgatc aacttatcac ctttaactat atttttgctc agagtgaatt acgcttatca
     8401 acgttagttg cgattttatt tggcttagga ttgattcttg gttggttggt aacgggtatt
     8461 ttttacttaa aaattaagtt tcaaaacgtt gctttaaatc gtcgtgtaaa gcgccaagct
     8521 cagcaaataa ctgaattaac gactccaaag gctgaataat caatgcttga attattgttc
     8581 cttttattgc ctattgcagc actatatggc tggtatatgg gacaacgtag tgcaaagaag
     8641 gatcaagaaa ccgctagtaa taagttctct cgtgagtatg ttacggggtt aaattttctt
     8701 ttatctaatc agcaggaaaa ggcggtggac cttttcctct ctatgttaca aaaacaagaa
     8761 tccgaaaatc atattgcatc tgaatcccaa tttgaagcgg agttaaccct aggtaatctt
     8821 ttccgttcaa gaggtgaggt agatcgtgcc ttacgtattc accaaacatt agtgaatagc
     8881 cctcattatt catttgatca aaaattatta gcaaaacagc aattagctaa agactttatg
     8941 gttgcaggtt tctatgaccg tgcagaaaat tattacattt cattagttga tgaacctgag
     9001 tttgctaaat attctttatc tcagcttgct gttatttacc aaaaaaccag agaatggaaa
     9061 aaagcgatta atgttacaga aaaacggctt cgaatagagc cggatgcaga taaaataccg
     9121 ctttcacatt tttattgtga atatgcgcaa ggggttaaat ttgatgataa agcggcattt
     9181 attgaatcgt taaataaagc gttagaatat tatcctcaat ccacacgcgc ttctataata
     9241 ttaggtgatt tctatttaga agagggagaa tatctaagag cattaagcta tttcgaacag
     9301 attcttgtgc aagaccctga ttatattagc gaagtgcttg gacgaattaa gcaaagctat
     9361 atggctcttg aggatttaaa tggctatgag ttatttctca ttcgagcaaa ccgagtaaaa
     9421 cataatagta gtgtagatat tgctttaact gaatttattg aagaaaaaga tggtatcaat
     9481 gctgcacatt ctaaactata ccagcagttg agtacttatc cgaatttaat tacttttcac
     9541 cgctttattc gctatcaagc agattttgcg gaggaaggaa atggtaagga aagcttagtt
     9601 ttattacata atatggtggg aaatcagata aaacgcagct tccaatatcg ctgtttaaat
     9661 tgtggttatc aaagttatcg cttaatgtgg caatgtcctt cttgtaatca atgggaaaaa
     9721 attaagccgg tacaaagtat cgaaggtatt attcaataaa gaaagaatct gaggaattga
     9781 aaatgaacaa taaagtaatt gttgcgttag actatgaaac tgaacgtgaa gcattagaat
     9841 ttgtggattt ggtcgatccg tcgctttgtc gtttaaaagt aggcaaagaa atgtttacaa
     9901 ccttaggcac aaattttgtc aaacaattac acgaacgtaa atttgatgta ttccttgatt
     9961 taaaatatca tgatattcca aatacggttg ctcgagcagt acgttctgct gctgatcttg
    10021 gtgtgtggat ggttgacttg catgcttctg gtggtttagc catgatggaa gaggcaaaga
    10081 aaattttgga gccttatggc aaagaggcac cattattaat tgcagtgacg gttctaacca
    10141 gtatggaaga tttggatttg cttcaaatag gtattaatgc ttcgccgatg gaacaagtta
    10201 ttcgtttagc acatttagca caacgggctg gtttagatgg cgtggtatgt tctccacaag
    10261 aagttgaggt attacgtacc cattgtggtc aagattttaa attagtgacc ccaggaatcc
    10321 ggccaaaagg aacagatttt ggggatcaac gccgagtgat gacacccaaa caagcagtag
    10381 aaacaggctc agattttttg gttattggtc gtcctattac ccaagctcaa gatccgcttg
    10441 cggtattaaa atctattaac caatctatca gttaattcat tgcattttta atgaaggcgg
    10501 aaaaatttcc gcctttttta atcaaacaag cggttatttt tgaggaaaaa tttgtaaatg
    10561 acattagtct attcaacgga aacaggcaga ataaagtccg aagtaataaa agaagagcgc
    10621 cctaaagggg atggtattgt gcgtattcaa cgtcaaacaa gcggtagaaa ggggaaaggt
    10681 gtttgcctta tcaccggtct tgatttagag gataaagcct taaattctct tgcttcagag
    10741 cttaaacgta aattgggttg tggtggctca tttaaagatg gagtaattga aatccagggc
    10801 gataatcgag gattcattaa gcaaatctta gaacagaaag gtttcaaagt gaaactggca
    10861 ggtggttgag ttttaaacaa ttatcagctg gcagttttta aataacttca ttttatttga
    10921 aacttcattc ctacttttct gcctaaaact cacgattaag gagaaaaact aatgtggaag
    10981 aaaacgttga ttgctgtatt tttagcaagc caatatgctt ttgcggtagg aaccgggaaa
    11041 gaaccatcaa aaagttatac tgaaacagaa ttaaaacaat taaaaaatga ttggttagcg
    11101 atttatcaaa aagagctaca gtatgcagaa aatttgcgtt taaaacagag agaaaatttt
    11161 cagcaaatta attatttggc agatgcagcg attagtcaga agaatttatc actttcaacg
    11221 gagcagataa ttcagcgttt attactaacc ttagcgggtt atccgttgga gatgaaagct
    11281 gaatggaagc tgctaaatgc taaaataacg ttaaaacaag ctacagaaag tgaagttaaa
    11341 gcatttattt caaaatatcc tgattctttg tatcaaaggc agttacagaa cttgatgttt
    11401 gagctgctct atcgtgaaca gaaatttccg gagttaatgg aatatgctca aaatgtaaaa
    11461 ccgagtagtc ttgccgacca atgccgttta ttttctgctc gttatgaact ggcagcaagt
    11521 aaagctcaaa tcaatccgga agtttctcaa gtaactgagc aaaaagcaga aaatgcagaa
    11581 ctgcttgctt tggtgcaaga gtttgatcgc ttttggcttg ctacgccgaa attaacttct
    11641 gattgtgcga atttagaaag ttattggcgg gatcaggggt ttaaaaccga tgaaaaagtg
    11701 cgtttgaaag cggtcgaatt aattaaacaa aatgcaaatg cggaattggc gaatttagcg
    11761 gtaaatgtaa acaatgagaa tttgaaaatc tggctatctt ccgttgaaaa agtagcgaat
    11821 aatccggcag atttgcaaaa ttttatcgaa aatcaaccgc ttgattctcc gttttatgct
    11881 gagaataaag cgattattca gcaactcttt gctaaatatg tgcgaacttt atcggaaaat
    11941 atggagaacc caagtttcca gcagtaccaa gcgtgggcgg agaagtatca attttccaat
    12001 gaggaaatga atagctggaa aaataccttt atcactcggc tttttgataa tccagaacca
    12061 acattccagc tttggcgtga tgagcaaatt aaactgctca atacagacaa tttaaccgaa
    12121 cgccgtttac gaatggcaat ttggcagcaa acagcgttaa atgagtggtt ggatttactc
    12181 tcaactgagg cgaaaggtaa aacagaatgg cgttattggg cagcgaaaga ggagaaaaat
    12241 gaagcgaagc gtaaagctga ttttgaaaac ttagctaaag agcgaggctt ttatgctatg
    12301 ttggctgctc aacaattagg cattatttac caaatcccaa tgctcgaggt acctgaattg
    12361 acgcagactc agcttgaatt gtatgaaaac caattagcgc gtattcaaga gttacgagag
    12421 ctagggcagt ttgagcaggc aagaagagta tggattgact ggctaaaaaa cattaaagcg
    12481 gaagcgggtg aaaatacacc aacgaaaatc caattagccc tgataaaata cgctaaggat
    12541 aaaaattggt atgatttggc ggtggaaggt acgattcaaa taaaagcctt tgattatctt
    12601 gatttgcgat taccaaatgc ctattcggat tggttcgatt tacatctgca agataaaaaa
    12661 atcagcaaaa cgtttgctca ggcgattgct cgtcaagaaa gtgcgtggaa tgctcaggct
    12721 caatcgcacg ctaatgcgag agggctaatg caactgttac cgacaacagc acaaaaaacc
    12781 gctaaagata acggtttaac cttcaaagat ggcaatgatc tctttcaacc gtttaacaat
    12841 attatgttag gcacaaccca tttaatggag ttaaacgaaa aatatccgaa taatcggatt
    12901 ctgattgcct ctgcttataa tgcaggagca gggcgtgttg agcagtggct gaaacgtagt
    12961 aacgggcagt tagcaatgga tgaatttatt gccagtatcc cgttttatga aaccagaggc
    13021 tatgtacaaa atgtgctggc gtatgactac tattatcaaa tgcgctatag cgatataaat
    13081 gataaaaatg gattaaaaat gttctatcaa gaggaattaa caagaaaata ttaaaaaatg
    13141 cttgtgtttt tgtgtagaac cgctataatg caccctatca gacagacgcg gggtggagca
    13201 gcttggtagc tcgtcgggct cataacccga aggtcgttgg ttcaaatccg gcccccgcaa
    13261 ccagttttaa gctcacagct ttggttaaag ttgtgagttt tgttttatat gctgtagcaa
    13321 atttgcaaaa aatttggcaa aaaagaccgc ttgttgtggt tgctacagca aaaaacaaac
    13381 cgcttaaagc cccacggttt cccgtctggg gcttttttgc ggaaattggt acagcattaa
    13441 cgtatcaaag ctggtttatc cggctttttt tatatttgga gattatgact tggcaacttt
    13501 agaacaaaaa ttagaagatt tagtgctcga ttctattgaa gcattaggct ttgaattagt
    13561 cggcattgaa tgccaacgtg caggccgttt tttaacggtg cgtttatata ttgataaaga
    13621 aggtggcgtg acgattgatg attgtagcga tgtcagccgc caagtgagtg cgatttttga
    13681 tgtggaagat ccgattgccg ataaatataa cttagaggtt tcttcaccag ggttagatcg
    13741 tccattattt accgttgccc actatgagcg ttttatcggg caagatgtag tgattcattt
    13801 acgcattccg atgttcgatc gccgtaaatg gcaaggtaaa atcaaacaag tagaaggtga
    13861 tttcatcact ttaacggtag aaaatgaaga ttgccagttc gcatttggca atattcaaaa
    13921 agcaaattta gttccggttt ttaattttta agataaaggt aaactgacaa aatgagtaaa
    13981 gagattttat tagctgcgga agcagtttca aacgaaaagc aattaccaaa agaggcaatt
    14041 tttgaagcct tagaaaccgc tttaaccatt gcaaccaaaa agagccgtga tttagatatt
    14101 gacgtgcgtg tggtggtaga tcgtaaaacc ggtgatttcc aaactttccg tcgttgggct
    14161 gtggttgaaa atgtgaataa tatgacccgt gaaatcagct tagaagcggc acaatttgaa
    14221 gatccaaacg tacaattagg cgattttatt gaagatgaag tagagtctat cgagttcggt
    14281 cgtgtggcga ttcagacttt tggtcaggta gtcaaaacca aaattcgtga agcggagaag
    14341 acgaaaatca ttgatgaatt ccgttcggat ttaggcaaaa ttattcttgc cactgtgaaa
    14401 aaagtaaccc gtgataatat tttccttgag ttacaaggta aatcagaaga tatcaaaggc
    14461 gaagcggtca ttgtgcgtga agatatgatc ccacgtgaaa acttccgccc gggtgaccgt
    14521 gtgcgtggtg tgttatacga aatcaagcct gaatcaaaag gacctcagct tttcgttacc
    14581 cgtgctaaac cggtgatgtt agaagagcta ttcaaattgg aagtgcctga aattggcgaa
    14641 ggcgtaattg agatcaaagg ttcagcccgt gatgtcggct ctcgtgcaaa aattgccgtg
    14701 aaaacccacg ataaacgtat tgacccggta ggggcttgtg tgggtatgcg tggtgctcgt
    14761 gttcaagcta tcagcaatga attaggcggc gagcgtgtgg atatcgtact ttgggacgaa
    14821 aatccggctc aatttgtgat taatgcaatg gctccggcag atgtaagctc tattgtgatt
    14881 aacgatgaaa ctcactcaat ggatattgcg gttgaagcga aaaatctggc tcaagctatc
    14941 ggtcgtaacg gtcaaaacgt gcgtttggcg acacaattaa ctggttgggc attaaatgta
    15001 atgaccgttg aagagctaac gaagaagagc gaagaagaag atggtaaagt catcaattta
    15061 ttaacttctg ctttagaaat tgatgaagaa tttgctcaag ttttaattga agagggcttt
    15121 acgtctcttg aagcgattgc ttatgtgccg gttgatactt taacggcgat tgacggttta
    15181 gaagatgaag atttagtcga agaattacaa tctcgtgcca aaaatgcgat cacgaaaaaa
    15241 gcgttagaag aagagaagtt attaaaatca gctcaaattg aagaaaaatt attaacgctt
    15301 gaaggtatgg atcgccatat cgcattcaaa ttagctgaaa aacagattac gactcttgaa
    15361 gaacttgcag agcaaggtgt tgatgattta gccgatattg aagaactttc agaagagaaa
    15421 gctggcgagc taattatggc agcacgccaa atttgttggt tcaactaagc aaagaggata
    15481 ataaaatgac agaagagaaa aaaacacttt cgcttggtgg cgctcgcaaa gcgagtaaag
    15541 tgaatacaac cacaaccagt ggtaaagtaa aagcggttga agtaaaagag aaaaaaccga
    15601 aaattgatgc aaaagcattg caagaaaaag cagcaaaaga agctgccgca gcgaaagcta
    15661 gagctgaaaa agaagcagct gaaaagttag ccaaagaaaa agccgaagct gaagctaaag
    15721 agaaagctgc aaaaaaagca gcagaatcga ccgctagtaa accgatttct gtgccggtaa
    15781 tgccaagcag caaagcaaaa gaagaaaaac cgaaagcaca acaggtacag ccaaaacaag
    15841 agaaagcggt tgatcctgaa aaagaagcta aacgcaaaga agaagctgag ttacgccgta
    15901 agcaagagga attagctcag caaaaagcgg aaatggaagc aaaacgtgct gcagaaaatg
    15961 cccgccgttt agcagaaatt gctcgtgaag aagcggaaga taacggcaac gaagattttg
    16021 atgatgagcg ttttacttct tcttatgcta gagaggctga gcgtgataat gaccgccgta
    16081 gtgagggaaa tcgtggtcgt aacggcaaag gcaatgtggc taaagcgaaa aaaggcggac
    16141 gtgaagagga taaaaacgaa cgcagtgcag atcgtcgcaa ccataaagaa gtaaaaggca
    16201 aaggtaaaca aggtaagaaa ggtgcagctt tacaacaagc ctttaccaaa ccagctcaag
    16261 ttgttaaagc tgatgtggtg attggtgaaa ctatcactgt ggctgaattg gctaataaaa
    16321 tggcagtgaa agcgactgaa atcatcaaaa tgatgatgaa aatgggtgaa atggtgacga
    16381 tcaaccaagt tatcgaccaa gaaaccgcac aattagtggc ggaagaactt gggcataaag
    16441 tgattttgcg taaagaaaat gagttagaag aagcggtttt agaagatcgt gatactcacg
    16501 cagaaaaagt aacccgtgca ccggtagtga ctattatggg ccacgttgac cacggtaaaa
    16561 cctcgttact tgactacatt cgtaaagcca aagtggcggc aggtgaagca ggtggtatta
    16621 cccagcacat tggtgcatac cacgttgaaa ccgatgacgg caagatgatc actttcttag
    16681 ataccccggg gcatgcagcc tttacctcaa tgcgtgcgcg tggtgcgaaa gcaactgaca
    16741 tcgttgttct cgtcgttgcg gctgatgacg gtgtaatgcc acaaactatt gaagctatcc
    16801 agcacgccaa agcagcgggt gcgccattag tggtagcggt gaataaaatt gataaaccgg
    16861 aagcgaaccc tgaccgtgta gaacaagagt tactacaaca cgaggttatt tctgagaaat
    16921 tcggtggcga tgtgcaattc gtgccggtat ctgcgaaaaa aggtatgggg atcgatgatt
    16981 tactagaagc cattattctg caatccgaag tgcttgaatt aaccgcagta aaagacggta
    17041 tggcaagcgg cgtggtaatc gaatcttact tagataaagg tcgtggccct gtggcaacta
    17101 tcttggttca atccggtacg ctaaacaaag gcgacattgt tctatgtggt tttgaatacg
    17161 gacgtgtgcg tgcaatgcgt gatgaaaacg gtaaagatgt tgaatcagca ggtccgtcta
    17221 ttccggtaga agtattaggc ttatcaggcg tgcctgctgc cggtgatgag gcaaccgtcg
    17281 tgcgtgatga gaagaaagcc cgagaagtgg ctctttatcg ccaaggtaaa ttccgtgaag
    17341 taaaactggc tcgtcagcaa aaagctaaac tggaaaatat gttcagtaat atggcagcag
    17401 gtgatgtggc agaattgaac atcattgtta aagcagacgt acaaggctcg gtagaagcga
    17461 tcagccaatc cttaatggaa ctttcaaccg atgaggtgaa agtgaaaatt gttggttcag
    17521 gtgtaggtgg tattaccgaa actgatgcaa ccttagccgc agcttctaat gctattatgg
    17581 tcggctttaa cgtgcgtgcc gatgcctctg cccgccgtgt gattgaaaac gaaaatatcg
    17641 atttacgtta ctactccatc atttatgagc tattaaatga cgtgaaagca gcaatgagcg
    17701 gtatgttaca gcctgaattc aaacaagaaa ttatcggctt ggcagaagtg cgcgatgtgt
    17761 tccgccaccc gaaatttggg gcgattgccg gttgtatggt gacagaaggt atcgttaaac
    17821 gtaacaaccc aatccgtgtt ctgcgtgata acgtagtaat ttttgaaggc gagttagaat
    17881 ctctccgccg tttcaaagat gacgtatctg aggtgcgtaa cggtatggaa tgtggtatcg
    17941 gcgttaaaaa ctacaacgac gtaaaagttg gcgaccaaat cgaagtgttt gaagtggttg
    18001 aagtaaaacg tactatttag cctaattttg tgtaggggcg tattgcatac gccctttgta
    18061 ttttttaggg cgtgaagcat cacgccccta taaaagagaa aaatatgtcc agagaattta
    18121 aacgtagtga ccgtgtggca caggagctac aaaaagaagt ggcggtgatt ttacaacgtg
    18181 aggtaaaaga tcctcgcatt ggtatggtga ctgtttctga tgtggaagta tcaagagatt
    18241 tggcgtatgc caaaattttt gtgactttct tatttgataa cgatgctgaa gctattaagc
    18301 aaggtatgca aggcttggag aaagcaagcc cctatattcg aaccctttta ggtaaagcaa
    18361 tgcgtttgcg tattgtgcct gaactgcgtt ttatctacga tgaatcgcta gtcgaaggta
    18421 tgcgtatgtc taatcttgtg tctagtgtaa tcaaaaatga cgaagaaaaa cataaagagg
    18481 actaattgtg tctagacctc gcaaacgtgg ccgtgatatt cacggcgttt tcttattaga
    18541 taaaccacaa ggaatgtctt caaacgatat tctgcaaaag gtaaagcgaa ttttccaagc
    18601 aaataaagcc ggacataccg gggcgttaga ccctctcgca accggaatgc tgccgatctg
    18661 tttaggtgaa gcgaccaaat tttcgcaatt tttgttggat tcggataaac gttatctcgt
    18721 caccgcaaaa ttaggcgagc gaaccgatac ttcagatgcg gaagggcaag tggtggaaac
    18781 caaagcagtt gcagtgacaa aatctcaaat tttggctgct ttggagaaat ttagaggtga
    18841 tattttgcaa gtgccgacaa tgttttcggc cttaaaacac aacggcaaac ccttgtatga
    18901 atatgcccga gcagggatta cggtggagcg tgaggctcgc ccgattacga tttttgaact
    18961 aaatttcatt gaatacaagg ctccattttt aacccttgag gtgcattgtt ctaaaggtac
    19021 ttatatccga actttggtcg atgatttagg cgaagagttg ggctgtggtg cacacgttac
    19081 gatgctacgc cgtacagcag tggcagatta tccgattgaa aaaatgatga gctatgcaga
    19141 tttgcaaaat ttagccgaaa atcaaccgct tgcagagtta gaccagcact tattgccgat
    19201 ggatacggca gtttctgcat tagcaaaaat aaatttaagt tcagagcaaa ctaaagcggt
    19261 gggttttggt cagagaatta gatttgataa tctgaaccaa ctttatggtt tggtacgttt
    19321 atattcagaa gatgaacaat ttctcggtgt ggcagaaatc accaatgata ctgtgattcg
    19381 tcctaaccga atgattaact taacggaata agaatgaaat cgacaatttt taccttacct
    19441 ttagcgatta tcactttagc cttagccggt tgttcaagtg ataatcaaga aagttatgcc
    19501 ggcttaaact tagatgctaa atacagtaaa tctcgctcgg tcagtcattt taatgattat
    19561 gtgcattttc tgaaacagaa ggcagcaggg gcaggagtgt ctgcaaaaac cttaaatgct
    19621 cagaaattca ttcattacaa cgccagagcg gtgcagttag atcaacagca agctgcacga
    19681 agacgtgacc cgaatgtacc gcctccgcca ccaaatccaa gtggtgtgac ccattattta
    19741 aacaaagtat taactcaagc gaaggtggat caggcaagtg aacgttggta tgaatataat
    19801 agccagctta cccatgccag ccaaaaatat ggggtacaaa aagagtatat tttggcactt
    19861 tggggaatgg agagcagctt tgggcgtaac caaggggatt ttgatgtact ttcggtgttg
    19921 gcaaccctcg cctttgatgg tcgccgtgag aagttattta cgcaagaatt tgtgaatgcg
    19981 atgaaaatgc tcgatgacgg cacaattaaa cgctatgaat tgcttggatc ttgggcagga
    20041 gcgatgggac aaactcaatt tatgccaact tcttacttaa cctatgcagc tgatggcaat
    20101 aatgacggta aaaaagatat ttgggagaat gaagccgatg catttgcctc gattgccaat
    20161 tatctttcaa cagtaggttg ggataatcaa ctaccttggg gtgttgaggt taaattagct
    20221 tcaccgatgg atttaagttt cgccggtctt gaaaccaaca aagcgaaaac attggcggaa
    20281 tggcaagcct taggtattta tttagcttat ccgaatggac aagaatcggc aaaattagct
    20341 caattacacg gcaaagaggt ttggttgatt cgtccggata aagaagcggg aagagcgttt
    20401 ttagtttcta ataatttccg tactttaatg gattggaata aatcgaataa ctttggtatc
    20461 agtatcggaa aatttgccga tcgaatttta gcttcagttg gtcaataatc gaataaaagc
    20521 atagtagcaa agcctatcta tgcttttatt ttatcaaagc gtcgcctttc ttctgcaaac
    20581 gacgttgctt aaaaaaatca ctgatctttt ggctacattc tctgcccaat acattgccct
    20641 gcacttctaa gaaatggttc attttataat cttcaaacag atgatagcgt gaacctaccg
    20701 cacctgtttt ataatcactt gccccaaaaa ccaatcgctt aatccgacta tgtaaaattg
    20761 caccggcaca cattgggcaa ggctcgagcg taacataaag ggtacaatct aacagacggt
    20821 aattccctaa agtttgtcct gcttgacgaa ttgcctgcat ttcagcgtgt gcagatggat
    20881 cacagagttg aatggtttgg ttccagcctc tgccgataat ctgttggttt ttatcaacca
    20941 gtactgcccc aaccgggatt tcgccttttg cttcggctaa atcagcgaga tcaagggcgt
    21001 attgcataaa ggcgatgtct tgctcggaga tctgaagtgg acaagaagtt tgatttggtt
    21061 tgataaacat agttgcaaaa aattgagttt ttttgaccgc ttgtaaaatg ccccacgagg
    21121 gtggggcatc gcttacttcg cttagtgtcg tttagtcacg acgaccacgt ttttcactga
    21181 aacgtttttc tttaaagcca cctttgcggt ctttattgaa accaccgtct cggcgaccac
    21241 cacgatcatt acgatcgtta ccacggcgac cacgaccttc aaatggattt gcattacttg
    21301 cactgtttga gccaagtaat gtcatctgca ttggtttgct taatacacgt gctttgtgag
    21361 cgaaatgttg tacgagatga tttggcattc cttgcggcaa ctcaatggtt gagtatttat
    21421 cataaagttt gatatgcccg atgtaacggc tgctgatatc cccctcgttg gcaatcgctc
    21481 caacaatatg acgaacttcc acaccgtctt cacgccccaa ttcaatgcgg tataaatcca
    21541 ttgccacacc attgttttcg cggtgttcac gaccgttacg acgatcgttt cgctcattgc
    21601 ggtcacgtcc acgttcagaa cgggcagcac gcacaaccgg atccggtggc agaatcagtt
    21661 tttgtttttc ttgcagtaac atcatcatcg ccgctgctaa ttcttcgtgg tcttgatccg
    21721 cagtaaataa atcttccaac aattcacgat atttttctaa atcgtgatgt tctaactgct
    21781 tagaaatgcg ggctttgaat ttctcacggc gtttttccat taaaatttcg tggtttggaa
    21841 tcgccacttc attaattggt tttttgatta aattttcgat attgcgtaat aagcggcgtt
    21901 cacgaggctc aacaaacagt aaggcacgac ctgaacgacc ggcacgaccg gtacgtccga
    21961 tgcggtgaac ataagattct tcttctaacg gaatatcgta gttaataacc aagctgattc
    22021 gctcaatatc aataccacgg gcagcaacat cggtggcgac taaaatatct aaacgaccgg
    22081 agcgtaattt atctaaggtt tgctcacggg cttgctgggt catatcgccg tttaatgccg
    22141 cagtacggta gccgttgcgt tcacacaatt cggtaatatc aatagtaccg gttttggtgc
    22201 gggtaaagat gatagcagca tcaaattctt ctacttctaa gaaacgcaat aacgcatcgt
    22261 ttttacggaa gccgtttacc agccagtagc tttgttcaat atccggggct gaacgctcgg
    22321 ttgccttaat ttttacctct tgcggatctt tcataaaacg acgggtaata cggcgaatcg
    22381 gctccggcat ggtggcagag aagagagcag tttgatgtgt ttccggtaat tcagccatta
    22441 ccgtttcaac atcgtcaata aagcccatac gcagcatttc atcggcttca tctaacacga
    22501 tgaattttaa ttcggataaa tctaatgtgc cacggcggat atggtcaaga atacgcccag
    22561 gtgtacccac tactacttgt gagccttgtt ttaaagcacg taattgaatg tcgtaacgtt
    22621 gtccaccata aaccgtcact acacgaatgc ctttcatatt ttttgcaaac tgctcacaag
    22681 catcggctac ttgaatcgca agctcacggg tgggtgccat caccaacatt tgcgggtggc
    22741 gttgtgttgg gtcaatttgt gccaacagcg gcagcgagaa tgcggcggtt ttaccgctcc
    22801 cggtttgtgc cataccaagc acatcacgac cggctaataa atgaggaata cattcttgtt
    22861 gaatgggtga tgggtttaca aagcccattt catttacagc atcaaggatt ggttgaggta
    22921 agcctaaatc ggcgaaagtt aaagattcag ttgtcataaa aaaccatttg tttggaacgg
    22981 aacaaagcag aaaatatcga ctatttttct gcacagccat taacgaaaat tatattgttg
    23041 aaatttagga agaaatgaaa taacaaagca agtgatgctt taaaaatccc ctgagtataa
    23101 gcggttaaat ttacaaaatt ttttgcgaaa ttaaccgctt gtattgtcct aatctttccc
    23161 tattctttat caacaacggg agtcgtttga gtcataccac gaatttgtga taactcaaac
    23221 agggcaaaac gatactcaac gaagttaaac acttgatttg caagagcaag acgaaagagg
    23281 ctgattgcct catctttatg atctaatttg agttgttgtt ttgctaagta gaaatacgtt
    23341 tctgtcagta tttctgcata ttgtgagcta ttttccttag cgtcacgttc cattatagca
    23401 cgaacttgag ctaaattgag cttccctaaa aaataattta cgatatttgt tccccagtaa
    23461 tccgaagaaa gattattagc tcgcttttgt aaattatttt tagcttctgt gggtgtaaat
    23521 tccagctcat taaaatagag ccataatgct cgataaggat ctttcttatc ttcttcataa
    23581 aaatggagaa gatcacgctg ggcttcagaa tatctgccgc tataatagaa agccaaacct
    23641 cgattgagat aggtgtagct atattcccga tctaattcca atacggcatt aaacgcatca
    23701 atcgaactgt cgtaatcgcc ttccagcagc agatacagcc ccatatagtt ataagctgcc
    23761 gccatacgtt gattgagcga aatggcttga gcaaaatcat aacgggctaa cgaccataaa
    23821 cctaaactgt cgtaaataac gcctctttca aaatagaggt ctgcttgctc agagggcgtt
    23881 aatggggctt cttccaatac ttggctgagc cttaccacca ttgcctcttg ttcaaagcga
    23941 agttgaggat taagttctgc caatgctaag tttttaattg aaaccaaatc ggcataccga
    24001 ctggtacagc cgcttagcat taaaacagaa attaaattca gtaataagaa acggattcga
    24061 aacaacttaa aaagttgtac cattacagca tatccctcaa ttaaggaaaa ttaaaaactg
    24121 aataacggac actcaaagtc cgttattcgc ctttattatt gaactagaaa ttattttctt
    24181 gttctgtttc taccacattt tcagctacag tttcttctgc atttgcctcg ttggtattat
    24241 tgatgtcttt catcgtcaga cgaatgcgtc cttgacggtc aatttctacc actttcactt
    24301 gtacttcttg accaacggtt aagtagtccg ctacacgctc aacacgttcg ttggtgattt
    24361 gtgaaatgtg gactaaacct tctttgccac ctaagatgga aacgaatgca ccgaagtcca
    24421 ccacacgggt tactttaccg ttgtagattt ggtttacttc cacttcggca acgatctctt
    24481 caatacgagc cattactgct ttcgctgcat tgccgtcagt tgccgcaatt ttcaccgtac
    24541 cgtcatcatc aatgtcgata gaagtattgg tctcttcggt taaagcacga attgttgcac
    24601 cgcctttacc aatcacatct ttgattttct tcggatcgat cttcattgtg tgaatgcgtg
    24661 gggcatagtc agaaatatct gcacgaggtg ccggaatggc ttgttccatt acacctaaaa
    24721 tgtgcattct tgcaccttta gcttggttta aggcaatacg cataatttca ggggtgatcc
    24781 cttcgatttt gatgtccatt tgcagcgcag tcacaccggt acgggttccc gctactttaa
    24841 agtccatatc gcctaagtgg tcttcatcac ctaagatgtc agaaagtacc acgaatttct
    24901 cgtcttcttt cacgagcccc attgcgatac cggcaaccgc tgctttgatt ggcacacctg
    24961 cgtccatcaa cgcaagagac gcaccacaca cagatgccat tgaagaagaa ccgttagatt
    25021 cagtgatttc agacaccaca cgcactacat acgggaactc ttcagcggtt ggcatcacgg
    25081 ctaatacgcc acgttttgct aaacgaccgt gaccgatttc acggcgtttt ggcgagccga
    25141 tacgaccggt ttcgcccaca gagtatggag ggaaattgta gtggaataag aaacggtcag
    25201 atttttcgcc ggtcaattcg tcaatgattt gggcatcacg ctctgtgccc aatgttgcta
    25261 ctgctaatgc ttgggtttcg ccacgggtga aaagagcaga accgtgggtg cgtggtaaca
    25321 cactggtgca aatatccaat gcacgcacgg tatccaccgt acggccgtca atgcgtggtt
    25381 cgcctgcaat aatacggcta cgcacgattt ggctctctaa tgcggtgatg atgtcgatga
    25441 tagtcccttc agaaacagtt tcatcttctg cggtaagttg tgcaatcacc tctgctttaa
    25501 tcgcatcgat ttgctcgtaa cgaacttgtt tttctacgat acgataagca tcgccaaggc
    25561 gtgtttctgc taatgctttt actttgttga ttaaatctgt atttggctct ggtgcaaccc
    25621 aatcccaacg tggtttgccc gcttctttaa caaattcttt gaggttttcg attacaacct
    25681 gttgttgctc gtggccgaac accaccgccg ctaacatttg ctcttcggtt aagatatccg
    25741 cttcagattc caccatcaac acggctttgt ctgtacctgc aaccactaaa tctaagcggc
    25801 tgattttttg ctcgctggtg gttgggttta atacgaattg atcgttgata aaaccgacac
    25861 gagccgcacc gattggaccg ttaaacggca cgccggataa tgaaagggca gccgatgcac
    25921 cgatcatcgc aaccagatca ggactgattt gtgggtttac cgatactacg gtcgcaatca
    25981 cttgaatttc gttaaagaaa ccttctggga aaagtggacg cacaggacgg tcgatcaagc
    26041 gagcgattaa ggtttcacct tcgctaggac gtccttcacg tttgaagaaa ccgcccggaa
    26101 tacgaccggc tgcgtaagta cgctcttgat aatctacggt taatgggaag aaatcttgcc
    26161 cttcttttac gtcttttttc gctactacgg taacaaatac ggttgtgtcg tccatacttg
    26221 ccattactgc tgccgttgct tggcgtgcga tagcaccggt ttctaaggtc acggtgtgct
    26281 gaccgtattt aaactgtttt acaattggag tcattgaaat tttcctttta aagaatttac
    26341 tattattgtc gttttatttc tctaaattgc gactagcaaa aaggctttta agtaaaacat
    26401 ttttgatagc cgcctctcaa taacaagaaa taaaacttgt ctagtatagc gtgattttta
    26461 taaaaaatcg cctattattt tgatcttgca cctcagttat aaagaaattc aaaacttcag
    26521 tgtaaaatgg ggattagttt gtgaaaagcc ttgtgaaaat agtttgattg catcgctatt
    26581 tttttattag aggtagttta aaactaaatc tgcttccttt accggcttca ctttcaattt
    26641 ccagtgtgga atggtgctgt tcaagagcgt gtttgacaat agccagacct aaaccgctac
    26701 cgccggtttt gttgctacga gattcgtcca cacgatagaa acgttctgtc agatgggtaa
    26761 tatgatgggc atcgatacca ataccgtcat cttgcacgct gaaaatcgca gtattcggct
    26821 cttgattatc acgttgacaa catatttgaa tggtaactcc ttcaccggcg tgccgtattg
    26881 cattgtaaat taaatttgat acagcgcttt ggagttgctc ttgatctccc cataccgtta
    26941 aattaggctc aatatcaaac agtatttgct gattttggct taaaatctcg gtattttttt
    27001 gtatggcgga gattaacgcc gacatctgga cctcattgtg ttcggaatca ttggaatgct
    27061 cgattttaac caaaagtgag agttggcgaa gcaggttagt catacgttga ctttgctctt
    27121 tcatcgcatt gagcgctttt tgctgtaatg ccatattatg cggctcgttt tccagcattt
    27181 ccaaataacc ttgtaatatg gtaagaggcg ttcgcagttc gtggttcata tttgccaaaa
    27241 aggtttgtcg tgagtgcata aggcggacaa aagaggttac atctcgtgcg acaataagtc
    27301 tggagttact gtcatatcga ttgagattca attcaatata gcgtttatta tgagtcagca
    27361 gtaccaatgg gcgatggtgt cgttgttggc ggaaatagct tttaaattca ggataaaaaa
    27421 tcacattaaa aatgctttta tttgattttt tgtcccaata aaactcaaat agctcttgtg
    27481 caacattatt gcaccaagaa atctccccgt tttcttggca aataatgatc gcatcgggta
    27541 agtattgaat atgcttattt aattttgata acagacgtaa ggttttgatt ttatcttggc
    27601 gtaaacgttc gtgatagaat gcggcacttt gagataaatg ctccattgtc gttacttttg
    27661 acctgccgct ttgctcatta ggtctgagta actgaaggag agaagattcg gtgtggtgat
    27721 gccaaataag tagaaccagt aaacaaaaac taaaccagaa aaaataagca gggaaaaaca
    27781 gattgaatac gccggcaacg gctgctgcca gcaaaagttc caataaaaag tgtttaagtg
    27841 agagcttaac tttcattatt agtcctgaaa atggttggaa aaacggtatc ccgagccacg
    27901 tacggtttga atataacgct caaaaccata gggttcaaga ctcttacgca atcgccgaat
    27961 ataagagtct accgtgcgat cctcaacata aatatcatta ccccaaataa aatcaagcaa
    28021 ctgttcacga cgatacactt tttcagggtg agtaattaaa aagtgaagca gtttatattc
    28081 cgtgccgctt aatttcactt cctgttcggc aaccaaaacc cgttgtgcct gttgatcaag
    28141 aatcaatccg tctatattga tgagattgct tggcggatca tagcttcgcc gccatactgc
    28201 ttcaatccgg gcaagcaaca cctgtggtga aaacggtttg gtaatgtagt cgtctgcacc
    28261 ggcattcaga ccggtaatac agtcttcttc gctactgcgg gctgttagca taatgattgg
    28321 aattttttcg gtttcaggct gtttttttag gtatttaatt aaatggatac ccgaacgccc
    28381 cggcatcatc caatccagta aaataagctc gggtttttcg cccagtttat tgatagcact
    28441 ttggtagtct tccgcttcaa ttacctgata ttgtttgctg agatagagac ttagcatttc
    28501 acgaatagca cgttcgtctt caacgatcag aattttgtta ttcattcttc ctctccgatg
    28561 cggtgtgaca agcggtcgat ttatcgcaga aatttgcaaa ttttttacta aaaccgaccg
    28621 cttgcagatt accccatttt acctttaatg taatcttccg tctgccggaa ttttggtttg
    28681 tcgaaaattt gtttggtatc accgaattca atcagctcgc ctagatacat ataagcggta
    28741 tagtcagaac agcgggctgc ttgctgcata ttgtgggtaa ctatcgctac cgtgtagtcg
    28801 tgcttgagtt cgttgataag ttcttcgatt ttcatagtcg aaatcgggtc aagtgcggag
    28861 cagggctcat ccagcagtaa cacctcgggt ttcactgcaa tacctcgtgc aatacagagc
    28921 cgttgctgtt gcccgccgga gagactgtca ccattttggt ttaatttatg ctttacctca
    28981 ttccataaag ccgctttggt taatgcccac tctacacgat cgtttagctc ggatttcggc
    29041 aatttttcaa acagacgaat accaaaagca acattatcgt aaatggacat cgggaatggg
    29101 gtcggttttt ggaaaaccat accgactttg gctcgaataa tcgaaatatc cgtatcggag
    29161 gtgagtagat tctctccatc aagattgatt tcccccgttg cacgttgatt cgggtagagc
    29221 tcaaacattc ggtttagggt tcgcagtaat gttgattttc cacaaccgga aggaccgata
    29281 aatgcggtca ctttattttt ggcaatacgc atattgatat ttttcagagc gtggaaatcg
    29341 ccataataaa aattgaggtt gttaatatgt aattttgtct ctaaatccgt tggtaacata
    29401 tagagtcctt attttgtttt gctgaaatac agacgagtga tgatattaag agaaagcaca
    29461 aacagagtaa taagcattgc acctgcccaa gccaatgtat tccagtcagc gaacgggctg
    29521 gctgcgtatt gataaatcac cacagggagg tttgccattg gtgcattcat atctaaagag
    29581 gcaaactggt tggataatgc ggtaaacaat agcggtgcgg tttctccgga aatacgggca
    29641 acagcgagca acacgccggt aataatgccg gagcgggcgg cacgataaga gagcattgta
    29701 attaccctcc atcgtgggca gccgagagcc gcagctgctt cacgcagatt attaggcaca
    29761 agattgagca tactgtcggt agttcgaaca acaatcggaa tcactaatac cgccaatgct
    29821 aatgagcctg cccagcctga atagtgttta acctgtgcga cataaatcgc ataaataaat
    29881 aagccgataa taatagaagg agcagagagc aacacatcat tcaaaaaacg ggtgaatttt
    29941 gccaatttgg tataacgccc gtattcgctc aagtaagtgc cggctaaaat accgattggt
    30001 gttgcaatca gtgttgcggt actgacaatc agtatagagc cgacaattgc attacgtaat
    30061 cctcctgttt catttggtgc aggagtcggg cgggtaaaca gttcccaaga cagtgcaggg
    30121 ataccttttt ggagtaaagt aacaataatc cagaccagcc aaaataagcc aaataataca
    30181 gcggaatagg caagacttaa catcaagaca ttttttattt ttcggcaata aaagcgtcgg
    30241 ttttggtaat ttttcattct cgttttcctt cctgtttacc cattcgtgcg attaataaac
    30301 gtgaagcggc taaaacaatc gaagtaataa ggaacagaat tagccctagg ctcatcaacg
    30361 ctgatttttg taatccgccg gcttcattaa attcattggc gatagcagaa gcgatggagg
    30421 ttgaagggga aaataccgaa tcaggtagca taaaggcatt accgatcaca aaggtaactg
    30481 ccattgtttc gcctaatgct cgacctaacc cgagcataat tgcaccgatt actccggttt
    30541 tggtgtaagg tagcacgact ttccaaataa cttcccaagt ggttgagcct aaaccgtaag
    30601 cagactcttt cagtaaaggc ggtacaacac tgaaaacatc acgcataatt gaggcaataa
    30661 agggaataat cataatcgcc aataccaagc cggcactgaa tagcccgatc ccgaaaggag
    30721 ccccgctaaa aagcataccg ataaagggaa gctgaccaaa tgtatctatc aaatacggtt
    30781 gcacatattc ttgaaataag ggtacaaata caaacagccc ccacataccg taaataatag
    30841 agggaatagc cgccagcatt tctaccgctg tgccgacagg gcgttttagc cattgcggtg
    30901 caagttcggt taagaaagtc gcaatgccga acgagactgg aacggcaatg actaatgcaa
    30961 tgccggcaga aatcaatgtg ccgataatcg gcactaatgc accgtatcgg tcattcacag
    31021 ggttccactc gttttcccat aggaatgata ccccgaatcg gcttaatgct tcccaactgc
    31081 caagcaataa tgaaaccagc accaccacca acaaggcaaa aaccagcaaa gcaaagaaac
    31141 gggttgtgtg atgaaataac ccctctaccc aaggatggtt taagcatttg ttatcaattt
    31201 tatgtttatg catagtgaca actcttttgc aaaatgttgt gaaaaaacga ccgcttgttg
    31261 ttagttaagc tccatacaag cggtcgtttt gcattagtag agcgaatttc cttgtccatc
    31321 tttaacttcc gttttccatt gagtttggat tttctctact acattatccg gtagaggcac
    31381 ataatccagt tcggcagccg catctttacc gtgcttaaat gcccagtcga agaatttaaa
    31441 taccccttta gtttgctctg gtttgtcgct atgttgatga atcaagataa aactggcggc
    31501 ggtaatcggc caggcttttt ctcccgcttc gttggttaaa ataacgccca taccggctgt
    31561 ttggctccaa tcggcgttag cagcggcagc agcaaacgtt tcacgggaag gctgaacaaa
    31621 tttaccatct gcattttgca tagaaaccca agccagagca ttttgtttag cataggcata
    31681 ttctacgtaa ccaatagaat acttgagctg tttcacataa gctgcgacac cttcatttcc
    31741 ttttccgcct tgtccgaccg gccatttcac cgattttcct tcgccgactt tctccttcca
    31801 ttcggcagag actttagaaa gatagtttgt ccaaccgaaa gttgtgcctg aaccgtctga
    31861 gcggcgtacg actaaaattg tttttgccgg cagggcgata tcttgattaa gtgcgacaat
    31921 tgccggatcg ttccattgtg taattttgcc taggaatata tcggcaagaa ctttaccgga
    31981 cagtttcagt tcgcccgatt taagttcagg aatattgaca accggtacag ttcccccaat
    32041 gatggcggga aattgcaaaa gtttgtgttc tgctaatgtt tcgcctttca tcgggtcatc
    32101 agaagcaccg aaatcaattg ttttggcaat aatttgttgc tgaccgccac cggaaccgat
    32161 agattggtaa ttgactttat taccggtctc tttttcatat aaacctgccc atttggcgta
    32221 gataggataa gggaaagaag caccggctcc tgtgatggtt tgagcatttg ctgcgacaga
    32281 aagtgaaaaa gaaatgccta aaacggtaag tagtttaaat cgtttggcaa tcatattgtt
    32341 ctccttaaag ttagcgtgag ttaatttcac gtgcttagtg tagaaaaaga atatgacaaa
    32401 atgatgacaa tggtaaaaaa atcagaaaaa acgaccgctt gtgtttcagg ctagactaaa
    32461 caggctaaat cgtagaaaat agccctcgtt tttttaatat aaatatcgat aaaaaatgac
    32521 cacagaaatc aattatgaag gcattgaaca gatgccgatt aagcgtttta ccgaagatgc
    32581 ttacctcaat tattcgatgt atgtaattat ggaccgggca ttgccgttta ttggcgatgg
    32641 cttgaaaccg gtgcaacgcc gtattattta tgcgatgtcg gaacttgggc taaacgcctc
    32701 ggcaaagtat aaaaaatcag cccgtaccgt gggggatgta ttaggtaaat tccatccgca
    32761 cggtgatagt gcctgctatg aagcaatggt gctaatggct caaccgttct cttaccgcta
    32821 tccgttagtg gacggacaag gcaactgggg ggctccggac gatccgaaat ccttcgctgc
    32881 aatgcgttat accgaatcga aactgtctaa aattgcagaa attttattgg gcgagttagg
    32941 gcaaggaacg gtggattatc agcccaattt tgatggctcg ttggaagaac cgaaatatct
    33001 gccggctcgt ttaccgcata ttttgttgaa tggcacgatg gggattgcgg tgggaatggc
    33061 aaccgatatt ccaccacaca atattaatga attggctgat gccagtgtga tgttgctgga
    33121 taacccgaaa gcaacgcttg atgatgtact aagcgtggta caagggccgg attacccgac
    33181 agaggctgaa atcatcacac caaaagcgga aattgccaga atgtatgagc aggggcgtgg
    33241 ttctattaaa atgcgtgcgg tgtggaaaaa agaagagggt gaaattgtga tttcagcctt
    33301 gccgcaccaa gcctctcctt caaaaattat tgagcaagta gcaacccaaa tgcggaataa
    33361 aaaactaccg atggtggacg atattcgtga tgaatctgac cacgagaacc cgattcgcat
    33421 tgtgattgtg ccacgctcta atcgcattga ttttgatgcg ttaatggatc acctgtttgc
    33481 gacgaccgat ttggagaaaa gctaccgagt caatatgaat atgattggct tagacggcaa
    33541 gccggcagtg aagaatttgc tgactattct caatgagtgg ctgagtttta gacgtaccac
    33601 tgtcactcgc cgcctgaatt accgattaga taaaatttta aaccgcttgt atattttaga
    33661 cggtttgatg attgcatttc tcaatattga tgaagtgatt gagattattc gcaatgaaga
    33721 tgagccgaaa gccgagttaa tggctcgttt taatctgacc gatgtgcaag cagaggcgat
    33781 cctgaactta cgtttacgcc acttagccaa attggaagag catcaattac aggcggaaaa
    33841 atccgaactg gaaaaagaac gtgatgaatt gcaactgatt ttaggctcgg aacgccgttt
    33901 gaacagcctg attaagaaag agattcaagc cgatgccaaa gcatttgcca gcccacgccg
    33961 ctcacctctg gtggaacgag cggagtctaa agcgattgcg gaaagcgact taaccccaat
    34021 cgaagatgtg acagtgattt tgtctgaaaa aggctgggta cgttgtgcca aaggacatga
    34081 tattgatgtt caagccctca gctatcgagc cggagatgat tatcttgccc acgcaagggg
    34141 cagaagtaat cagcctgtgg tgttcttaga cagcactggg cgagcttatg cactcgatcc
    34201 aacttcactg ccttctgcac gctcgcaagg tgagccactt acaggcaaaa tcactctacc
    34261 tgaaggtgca actgttcaac aagtattaat ggcaaattcg gaaaccaaag tgctaatggc
    34321 atccgattca ggctacggct ttatttgcac ctttgaagat ttggtttctc gtaataaagc
    34381 cggcaaagcg gttatttctt taaccgaaaa cgcaaaagtg ctgccgccgc aattattgga
    34441 aaatgatgaa aatttatctt tagtggcaat gagtaatgtc ggtaggatgt tggttttccc
    34501 ggtgagtgaa ctaccggcac tttccaaagg taaaggcaat aaaattatca atatttccgc
    34561 tgccgcagca aaatccggtg atgaatattt agcccgttta ttggtcatca aaccaaccaa
    34621 ctcgctggtc tttgtgtccg gtaaacgcaa aatcacatta aaaccgagcg atattgataa
    34681 ctaccgtggc gaacgagcaa gaaaaggctc acagctagtg agagggctta gtaccaattc
    34741 aacggtagag attgttgagt aaagagaaga agcggttagg gggtaaatcc aacaattttg
    34801 ccccaaataa ccgcttgcaa tggagttatt gcttattcaa ataagccttt gtgaagcgaa
    34861 cgaaccacat cgtctgcttc tgcatttttc actaaggtac aaacattatt gctgcttgct
    34921 ccatagctga ttaggcgaat gttgtaattc tcaagagtgt ggaataattt tttcgccaca
    34981 ccggactgag cgtgtaagtt gttgccgata atagcgacta aagcgaggtc gctttctact
    35041 tgcacattgc aatatgcgtt aagctcatcg agtaattccg ctgataacat atctgcacct
    35101 gaagaggctg agcccgtttt atctagggtc aatgcaacgc tgacttcgga agtggtaatc
    35161 acatcaaccg aaattttgtg tttcgctaaa atcgcaaata cattcgctaa gaaaccttgt
    35221 gcgtgtagca ttgaaaggct ggaaagagtg agtaaaattt ggttgcggcg taatgcaatc
    35281 gcacggaaag tcgggcgtgg ttgtggatca cgggttaccc aagtgccgcc ttgttccggt
    35341 gctttgcttg agccaacata tacagggata ttgctacgca ctgccggtaa taaggttgct
    35401 gggtgtaata ctttcgctcc aaatgttgcc atttctgccg cttcgttaaa tgccattgtg
    35461 tcaatgcgtt gagcgttcgg tacaacacga ggatcggtgg tataaatccc cggtacgtct
    35521 gtccaaatga gtacatcgtt agcatttaat acttctgcta acaatgcagc agagtagtct
    35581 gaaccgccac gtcctaaagt agtggttttg ccttcatcat cacgaccaat aaagccctgt
    35641 gtaatcacaa ttttgcctga tgcgattaat ggcttaatca cattgtctga ttgttgctgg
    35701 gttttctcgt catttggtgc tgcttttcca taatggctgt ttgttgccac aacgtcacgc
    35761 acatctaccc atactgccgg gtgtccacgt tcaattaata attgcgtgaa gattttggtg
    35821 gacatcattt ccccatggct gattaactca tcacttaagg cagctgaagt agcaaggctg
    35881 gctgattctg ctaatgtttc aatacgttct aataattcgt cgatttccgc tttaacggca
    35941 tcttgatgtt gtaatttttc aataatattg tattgaattt ggcggactgc tgcgatgact
    36001 tcatcacggt gttctttttc acagccgtta gcaagttcca ctaagtaatt ggttacgcca
    36061 gcagaggcag aaagtaccac cacacgagta tttgcatcag caattacaat attggcagaa
    36121 gaggtcattg catcaaaatt tgcaacactt gtaccaccaa atttagccac agaaagatga
    36181 gacataataa aaatttcctt aaaacaaaaa tagataaata ttgtgttagg ggatattcgg
    36241 aaaggaaatt tgagtagatt atacggtttt attgttgaac caattaatca gagcactcca
    36301 tttaatatgg tgaaataacc tattaaatga cagctgatag gattcaacct attcagccga
    36361 tgttaattcc agtctagtga attcacacct cggcaatcac tcccatcact taattctcaa
    36421 acggccctag ttgcctaaaa tcaagttgcc tgagtgttgc acctctcccg taatggcaag
    36481 cccattactc tttttcaaca gtattgaaaa gtgtgcatag aaataccgtt ttattaatgt
    36541 tttgtcaatg
//
LOCUS       DANLUT010000010        31077 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLUT010000010 DANLUT010000000
VERSION     DANLUT010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31077
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            302..1030
                     /gene="ttrB"
                     /locus_tag="PXB38_000419"
     CDS             302..1030
                     /gene="ttrB"
                     /locus_tag="PXB38_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5352782.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1032..2063
                     /gene="nrfD"
                     /locus_tag="PXB38_000420"
     CDS             1032..2063
                     /gene="nrfD"
                     /locus_tag="PXB38_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5352783.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWWSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2053..5148
                     /gene="ttrA"
                     /locus_tag="PXB38_000421"
     CDS             2053..5148
                     /gene="ttrA"
                     /locus_tag="PXB38_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5352784.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIVNGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGASYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALADYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5289..6134
                     /locus_tag="PXB38_000422"
     CDS             5289..6134
                     /locus_tag="PXB38_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5352785.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6247..7644)
                     /locus_tag="PXB38_000423"
     CDS             complement(6247..7644)
                     /locus_tag="PXB38_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5352786.1"
                     /translation="MKLSKLAFYVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7734..8357)
                     /gene="gmk"
                     /locus_tag="PXB38_000424"
     CDS             complement(7734..8357)
                     /gene="gmk"
                     /locus_tag="PXB38_000424"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5352787.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGHFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8470..8943)
                     /gene="gpt"
                     /locus_tag="PXB38_000425"
     CDS             complement(8470..8943)
                     /gene="gpt"
                     /locus_tag="PXB38_000425"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5352788.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9088..10497)
                     /locus_tag="PXB38_000426"
     CDS             complement(9088..10497)
                     /locus_tag="PXB38_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5352789.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSISVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYPRQNKEVFFTLEKLF"
     gene            complement(10693..11553)
                     /locus_tag="PXB38_000427"
     CDS             complement(10693..11553)
                     /locus_tag="PXB38_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5352790.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKEVDPIAIIKAKGIDD
                     TNYGLKLGNSKETIEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVT
                     VKGLKTEKLPTEGTATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLI
                     VLEEGTINNTQISSTVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFG
                     LAGTRGDIQK"
     gene            11756..13210
                     /locus_tag="PXB38_000428"
     CDS             11756..13210
                     /locus_tag="PXB38_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5352791.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(13285..14574)
                     /locus_tag="PXB38_000429"
     CDS             complement(13285..14574)
                     /locus_tag="PXB38_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5352792.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLVSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(14778..15113)
                     /locus_tag="PXB38_000430"
     CDS             complement(14778..15113)
                     /locus_tag="PXB38_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5352793.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(15103..15537)
                     /locus_tag="PXB38_000431"
     CDS             complement(15103..15537)
                     /locus_tag="PXB38_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5352794.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(15592..16647)
                     /gene="modC"
                     /locus_tag="PXB38_000432"
     CDS             complement(15592..16647)
                     /gene="modC"
                     /locus_tag="PXB38_000432"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5352795.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVKQFPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVWKIETHLERVDLAIQVENQQIWSTISLWSFNEL
                     AIQPGQEVYLQIKSVSL"
     gene            complement(16634..17326)
                     /gene="modB"
                     /locus_tag="PXB38_000433"
     CDS             complement(16634..17326)
                     /gene="modB"
                     /locus_tag="PXB38_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5352796.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIVHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGATPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(17572..18327)
                     /gene="modA"
                     /locus_tag="PXB38_000434"
     CDS             complement(17572..18327)
                     /gene="modA"
                     /locus_tag="PXB38_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5352797.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKYRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWGS
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVSVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(18348..19109)
                     /locus_tag="PXB38_000435"
     CDS             complement(18348..19109)
                     /locus_tag="PXB38_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352798.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(19111..20019)
                     /locus_tag="PXB38_000436"
     CDS             complement(19111..20019)
                     /locus_tag="PXB38_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5352799.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(20025..22082)
                     /gene="dnaX"
                     /locus_tag="PXB38_000437"
     CDS             complement(20025..22082)
                     /gene="dnaX"
                     /locus_tag="PXB38_000437"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL5352800.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAKKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(22173..22712)
                     /gene="apt"
                     /locus_tag="PXB38_000438"
     CDS             complement(22173..22712)
                     /gene="apt"
                     /locus_tag="PXB38_000438"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL5352801.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGIKSFSLVSFEGH"
     gene            complement(22840..23790)
                     /gene="lpxM"
                     /locus_tag="PXB38_000439"
                     /gene_synonym="msbB"
     CDS             complement(22840..23790)
                     /gene="lpxM"
                     /locus_tag="PXB38_000439"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL5352802.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(24231..24914)
                     /locus_tag="PXB38_000440"
     CDS             complement(24231..24914)
                     /locus_tag="PXB38_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL5352803.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(24923..25555)
                     /gene="rsxG"
                     /locus_tag="PXB38_000441"
     CDS             complement(24923..25555)
                     /gene="rsxG"
                     /locus_tag="PXB38_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL5352804.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(25555..26610)
                     /gene="rsxD"
                     /locus_tag="PXB38_000442"
     CDS             complement(25555..26610)
                     /gene="rsxD"
                     /locus_tag="PXB38_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL5352805.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMILPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(26656..27291)
                     /locus_tag="PXB38_000443"
     CDS             complement(26656..27291)
                     /locus_tag="PXB38_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL5352806.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(27284..29578)
                     /gene="rsxC"
                     /locus_tag="PXB38_000444"
     CDS             complement(27284..29578)
                     /gene="rsxC"
                     /locus_tag="PXB38_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL5352807.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(29565..30182)
                     /gene="rsxB"
                     /locus_tag="PXB38_000445"
     CDS             complement(29565..30182)
                     /gene="rsxB"
                     /locus_tag="PXB38_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL5352808.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMV
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(30182..30763)
                     /gene="rsxA"
                     /locus_tag="PXB38_000446"
     CDS             complement(30182..30763)
                     /gene="rsxA"
                     /locus_tag="PXB38_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL5352809.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
BASE COUNT         8684 a         7137 c         6731 g         8525 t
ORIGIN      
        1 aagcaggatg gaaaattaga aaaggaaaga aacataatat attaattgcc ccaaattcta
       61 ggagattagc gatacctagt accccgagtg atattaatgc gtataaaaac tttagatcta
      121 aactaaacca tcttattgct ttttaattag tatcaatgcc ctattatcta cttgtatagg
      181 gcatttccct tcatccttga cccaaatcaa ctttcccctt gatatgtgga aaaccacaat
      241 accttgccgt tccctctccg ccttagaata cctttgttat ttttaaattt gtgggggaaa
      301 tatggattta agcaaacgtt cctttttgaa agagctttcc gccttgacgg tgggggcgag
      361 ttttgtgccg ttgcaatcgg cccaggcgtt tatgccggct tggcgtgagg gcgatgagaa
      421 caaacgctat gcgatgctga ttgatttgcg taaatgtatc ggctgtcaag cgtgtaccgt
      481 gagctgttcg gtggagaacg ccacgccgtt gcacagtttc cgcaccacgg tgcgtcaata
      541 tgaaatcacc aacggcacgc aggtggtgaa caatgtggtg ttgcctcgtt tgtgtaacca
      601 ttgcgatcaa ccgccgtgtg tgccggtctg cccggtgcag gcaacctttc aacgtaaaga
      661 cggtgtggtg gtgattaaca atgagcagtg catcggctgt ggttactgcg tgcaagcctg
      721 cccgtatgat gcccgtttta tcaatgaaga gaccaaaacc gccgataaat gcaccttctg
      781 cactcaccgt ttggaggtag gtctgctgcc ggcgtgcgtg gaaagttgcg tgggcggggc
      841 aagggtgatt ggcgatttga acgacccgaa aagtcaaatt tcccaacttt atcaagccca
      901 caaagatgat ttgaaagtcc tgaaaccgga ggccggcacc gtgccacacg ttttctatgt
      961 ggggctagac gatgatgcct ttgtgagcaa aattgacggg caaccaatgc tctggacggg
     1021 ggaggcgtaa aatgattcgt gaagtattag tggaaccgca acatatcgtc tggttgccgt
     1081 ggattgtgca ttatttcttc ttcgtaggcg tggcggcaac ggcagtgttt accgccgtgc
     1141 tgtttgcaaa aaaatcactg aaaccgaccg cttgcgagct ggcggcggtg acggtagcct
     1201 tgattggctc gattgtcgcc cctgtggcat tgactgccga cctgcaccaa ccgagccgta
     1261 ttctgcattt ctacaccgat tttgcgtggt ggtctccaat ggcgtgggga gcgattatcc
     1321 tgcccctgtt cagcgtggcg gtagcaggtt attttgtgct ggcattggct catcataccc
     1381 ggccgaacct gccgaaatgg ttagcgtggc tacagttgcc gatactgcaa aatcaaggct
     1441 tgctttgggc attccgcctg tttgccacac tcaccgctat cggcattatc ggctacaccg
     1501 tgcttgaaac ctaccaaacc ggcacaagaa ccttatggca tagtgcgtgg ctgctgccga
     1561 ttatgctctt ttctgcgtgg gcggtggcat tggggcttac ccaagcggtc tgcaaaatgc
     1621 tgttccacac ccaaaccaac acggggctat ggacaaaact ctgcctgatt ttaaccgcac
     1681 tttcgcttgt cggactagca ttcagtagtc cacaagccac acaagatttt gcccagctct
     1741 tcaatggctc aatcaccgct taccttgtcg gcattttctg gctaattgcc ctcatttgca
     1801 atttttctgc caaaaaccac cgcttgcaat ggctcggcgt gcttgccctc atcgctttcg
     1861 gctggctact ccgctgggta ctggtgatcc aagtccaaac cattgccaaa accaatgcct
     1921 tgcaaaatcc atatcatttc gattggacag ccgttgatgg tggtttgggg attgtctcga
     1981 tttttgggct aacggtgcta gtaagtatcg tggtatggca actgatttta ataatttgtg
     2041 ggggaagaaa aggtgaacaa taaacgcaga aatctgttga aaggcgggct ggcacttggt
     2101 ggggcggcgg cgtttggggc cgggtattcg ccgaaggtgt cggagattgc caaaggggtg
     2161 atgcacggca catcgggcga gaaaacccgt gatgcaattc acggtaattc gctcacgccg
     2221 gagtatcagg taaaagacgg caaactgctc agcaatcctg agcaaattgt gtgcaataca
     2281 cagtgtatgg gctgttggac gcagtgtggc attcgggcga gggtagattt gaacaccaac
     2341 caagtgattc gcatttcggg caatccgtat cacccgcttt cctccgacaa aaccctgccg
     2401 ttcggtatgc cgattgccaa ggcggaactg ttgctggcgg gcgaaagtgg cattgaaaat
     2461 cgctccaccg cctgtgctag aggggcggcg ttcttggagg gggtgaacag cccgtatcgg
     2521 attacccaac cgttgaaacg ggtcggaaaa cggggcgaag gcaagtggca gaccatcagc
     2581 tttgagcagt tggtggagga aatcgtcaat ggtggcaacc tatttggtga aggcgaagtg
     2641 gagggcttga agacgatccg caatctggtc gatccgatta acccgaaaca gcctgatttg
     2701 ggaatgaaag caaaccagct tttagttact tttgccggcc ccgaaggtcg tcagccgatt
     2761 ttgcaacgct ttgcccaaaa gagcttcggc acgatcaact tttccaacca cggggcttat
     2821 tgtggcgctt cgtaccgtgc cggttcgggt gcctttatga aagattttga caaccaacaa
     2881 cacgccaagc cggactggga tcacgctgaa tttattctgt ttatcggcac gtctccggca
     2941 cagtcgggca atccgtttaa gcgtcaggct cgccagcttg ccaaacgccg ccctgatgac
     3001 aatttcagct atgtggtggt ttcccctcgt ttggagatga cctcctccct cgccacccaa
     3061 aacaaccatt gggtgccgat taagcccgag ggcgatttgg cgttggtaat gggaatgttg
     3121 cgttggatta tcgaaaacga gcgtttcaat gctgactacc tctcccgccc aagtctggca
     3181 gcgatggaaa atgccggcca cgtcagctat gccaatgcgt cacatctgat tatttgcgaa
     3241 ccgaaccacc cgaaattcgg gcaggcgttg cggattagcg atctgcaaga tgtgcaactc
     3301 gaccccgaag agaaagtgga agaaaacctg attgtggtaa aagatcaggc aagcggcgaa
     3361 ctcatttcag caaaagattg cttacaagcg gtcatttttg tcgaacaaat tgcaaaactg
     3421 cttgatggct cggaagtgtt ggtgaaatcc tcaatgcagt tgctgaaaga ggcgacacaa
     3481 gagaaaaccc ttgccgaata tagcgacatt tgtggcgtgc cggtgcaaac cattgaaaac
     3541 ttagcgaaaa aattcacttc gcacggtcat aaagccaatg ccatcactca cggcggcacg
     3601 atgcacagca ccggttttta taccagttgg gcgattttgt tgctgaatgc aatggtcggt
     3661 aacctcaaca aaaaaggcgg aatggcagta gccgcaggca aattcaaaga tttcggggac
     3721 gggcctcgct acaatttagc gaacttcccg aatgaagtga agccaaaagg cacgaacctt
     3781 gcccgcagta aaaaggcgta ccaaaattca agcgaattta agcagaaagt gacgaagggc
     3841 gaaaatccgt atccggcaca aggggcgtgg tatccgttca ccggcgggca aactaccgag
     3901 atgtttacct caatggtgca gggctatcca tactttgcga aagcgtggat caaccatatg
     3961 gcgaaccccg tttacggctt aaccgctatg aacccgattg cgttggagaa attaaaagat
     4021 ccgaaaattc taccgctctt tgtctctatt gatgctttta tgaacgaaac cactgcactg
     4081 gcggactaca tcgtgccgga cacccacaac tttgagagct ggggcttttc aacggcgtgg
     4141 ggcggtgtgc ctcaacgcac cagcaccgca cgccacccga ttgtgccgtc caaaaacgcc
     4201 aaaactgccg aaggcgacac catctgtatg gagaatttcg tgattgcggt ggcgaaaaaa
     4261 atgggcttgc cgggctttgg cgaaaatgcg attgccgatt tagaaggcaa ccgctatccg
     4321 ctccaccgta ccgaagatta cttcctacgg gcggcagcga acattgcctt tgccggtgag
     4381 aaacctgcac cggacgccag cgagcaagat ctgctgctca ccggcgtgca acggattatg
     4441 ccgaaaattg aacaaacgct aaaagccgaa gagcgattaa aagtggcgaa tgtgtattgc
     4501 aaaggcggac gttttgcccc acacgaaagt gcgtggaaag aggagaatat ggagttccag
     4561 tggaaaaact gcctgcaaat ttggaacgaa aacgtgtata aagcccagca ccacagcaac
     4621 ggtgaacact attggggctg ccctcgttat atgtcgccac gttttgcgga cggctccacg
     4681 ctggagcagc actatccgca gtcggaatgg ggctttaaac tgatttcgtt taaatcgaac
     4741 attatgagca gtattaccgc cccactgttg cgtctgctct cgatcaagcc tgagggctta
     4801 gtggcgatga accgtttaga tgcggaagaa aaaggcatta aacacggcga tgtggtgaaa
     4861 ctcagcaccc caaccgccgg cttgacggtg cagattgtgg tgttggacgg tatcgcccga
     4921 ggcacaatcg gcatcgaaca cggctacggt cataaacaga ttggggcaag ttcctacacc
     4981 attgacggcg tggaaattcc agccaacccg atgatcgcca aagggattaa cctcaacgac
     5041 ctcggcatta tcgaccacac caaagcggtc aaatccccgt gggtagattg ggtctgtggc
     5101 tcagcggtga gaaatggcat tccggcgaag gtagagaaat tagcctagcc gaacaagcgg
     5161 ttggttttgc agaaaaatgt gcaaaatcga ccgcttttat tgatgtaagg gacactgttc
     5221 cttatgcaaa ccagcattgc agagcgtaaa aaatcatact ctgcatttta atttattttg
     5281 gagaacctat gacttttgtc aaaaaaacag cactgagcct gattgcaacg gcacttttcg
     5341 ctacatcaag ttttgccgct gagcagagcc aataccaaca tattcgtaat gcaacggcga
     5401 aaattgaata tgccggcaag acgtttttgg ttgatccgta tttagcggag aaagatcgct
     5461 acttaccgcc gaatgcgaaa aaacgtaatc cgaccttgga tatgactgtg agcattgatg
     5521 aagtgttaaa tggcgtggat gcggtgatcg taactcacac tcaccacgct cactgggacg
     5581 atgtagcaca acaacgtgtg ccgaaaaatc tgccgatttt tgtgcagaat gccggtgatg
     5641 cccgtttaat ccgttcacaa ggctttaccg atgtgcgtgt ggtcggcaaa gataccccgt
     5701 ttgaaggcgt aaccttaacc cgaactcgtg gccagcacgg caccgatgcg atgtatgcga
     5761 acccgaaaat tgccgaaatg gtcggcgatg cgatggacgt agtgatgaaa gcggaaggca
     5821 aaccgaccgt ctatttggtg ggagatacca tttggaacca cgaaatcgaa cattcgttca
     5881 acacttacaa accagacttt gtggtgctga atgccggctg tgccaaacta ccaaactttg
     5941 aaggcagccc gattatgtgt accgaagatg tttccaaagc acacaaaatc gctccacaag
     6001 cgaaaatctt aactgtgcat atggacgccc tgccacaaac ctcaatcagc agtgatcaga
     6061 tgcgtgatta tgtacaaaaa gagggattaa atcgtgtaac tgtgccgaaa aacggtgatg
     6121 tgattaagtt ctagtagcta aactaacatt accaaaatgg tttaagtagc aataaatagc
     6181 gaagcgggtt aagccatcaa gccttaaccc acttttacca accatagtat atagttttag
     6241 atataattat cttctgtatt tacctgccat tgcttggtaa accgcattct cgttggtcaa
     6301 aatcgcatat tttgcattta aaatcgccaa ctgagaatta agctcggtat tcagtgcggt
     6361 aatccactca cggaactccg acaccccttg ttcataacgg tttttatagt atgaactgat
     6421 acgtttattt ttcgcattgg tatcttgaag gatttttaac gagcttctcg actgcgtata
     6481 actgtaataa taacggtcaa tttcatttaa ggctgaggta attttttgct catagtttaa
     6541 acgggcagtc acataatccg tttcagaaat ttttacgtta tttttaaccc gattccaatc
     6601 taagaacggt aaatccaatt taattaagcc gttacccaca gggttatctg ccacattgcc
     6661 gatattggtt gcactaccgg taatagaacc accgatggtt aaggttggga accagctttt
     6721 ctcggttgcg gttaaggttt taaatgcact ttgtaagcgt tgtaacgagc ctactacatc
     6781 agggcgatta gcaatggctg acactggcac atttaaatct accccttgca atttcacgct
     6841 cataatattc gggtaacgaa tgttaagcgg agtatttggc tgaacattta acaaattgcg
     6901 taatgtttgc tcggcaattt tttggttggt tttcagatca attacactat ttctggcgtt
     6961 taagaccgct tgttgagcct gatcaaccgc taaactatca atcgcaccgg cattcatttt
     7021 gttagttaaa atacggctga tttgctcata atggcgaatg ctctcttcgg taatacgaat
     7081 cgcatcacga tagtaagcta actggtagta agtagtcaca accgcattaa taatagataa
     7141 acgggtagct tttaagtctt caatggtggc tttatgcgtc cattctgccg cactggcggt
     7201 atcggctaaa cgtcgccata aatccacagt ataacttaaa ttaaatgcag cttgagctgc
     7261 ggttgttgaa acaccggtcg aaacattatt tgaagaagcc gaacctaaac ctttagccgc
     7321 agaaacagaa cctgaaccac taaaggttgg cactaaattt gcccctacta aattagcgtt
     7381 atacaaggct ttattgactg caattccgct tttggctaaa tcaaggttat ttttgatggc
     7441 taaatcaacc acacggttta attccgcatc cgtatagcct tgccaccatt gctcgttaat
     7501 ttgatattgt ttggtaattt catcatagct ttgataggtt tgctgtgctt gttgcaaagt
     7561 cccgtcattg ctcatattcc ctgtggtaca agccgttacg gttagagcca acgccacata
     7621 aaatgctaat tttgaaagtt tcattacatt tccttttgaa aataaagagg ggaaaatggg
     7681 cgtattctac ccaaaaacag attgcctttc cagttaaatg aacaactgtt catttaatta
     7741 tttaacaaat cagtaatcaa atgctgatga cgaatttgtt gcgaacctaa gctcaaacgc
     7801 tcggcaatta aaatcgcttt tagctctgcc aatgcctgtt ggaaatcatc attaataatc
     7861 acataatcga actcattgta atggttcatt tccgacaccg cctctgccat acgtttggca
     7921 atggtttcag cggaatcttg cccacgcccg attaaacgtt tttccaattc tgtttttgac
     7981 ggtggcaaaa taaaaacggt tttcacattc ggcacttttt cccgaatttg tctagcccct
     8041 tgccagtcaa tatccaaaaa gacatcaatg ccctgctcta ggctacgttc aatcatcggc
     8101 aatgatgtgc cgtaataatt gccaaacacc tccgcccatt ctaaaaaatg cccttgctca
     8161 atcagctgct taaactcatc gtgcgaagtg aaataataat gcacgccgtc ctgttctgcc
     8221 ggacgaggct gacgggtagt gtgtgaaatc gaaagctgta cttccgaacg gggtaaatcc
     8281 gccaacaagg cgttaattaa ggaagatttt cctgctccac ttggggcaga aataatataa
     8341 agattgccta aactcattat ttgtatatac ctatttgatt ttgggaatag ggcgaatgat
     8401 gattcgcccc tacatttcat aggaataaat aaaaaataat ggacaacttt cattgtccat
     8461 tacacaaaat tatctacgtg ccaaaggctg aacgaaggta atgcctaaat cccaaggctg
     8521 ctcaatccac gtttcttgtg gaatatcaat cacataatca tcaaccaacg gtgcaccgtg
     8581 cggtttcgca aacacggtta caaaacgagc tttcgggtac attctgcgaa tttcttttgc
     8641 cgtgttgcca gtatccacta aatcatctac cacaataaag ccttcgccat cggtatcggc
     8701 tgcgtgtaac acatttaact caccttggct atcgtgatcg tagctggcaa tgcacactgt
     8761 ttctacgtgg cgaataccca actcacgtgc taaaacggct gccggaaaca agccgccacg
     8821 gctcaccgca ataatccctt tccactgtgt ggcaggtaat aaattttctg ccaacttgcg
     8881 agcgtgcata tggaacatat cccacgtcac gacatatttt tcatttgtgt atttttcact
     8941 catagaaaca acctaatata aaattggggg ctaccccgat ataaaaaatc gcactaggat
     9001 aacccgaaaa tgcttttttc gccatcattt catttatttt ttgtgccggc agctacgcaa
     9061 tcgtatgctt agcacaaaaa accaacacta aaatagcttt tctaaagtga aaaagacttc
     9121 cttgttttgg cgagggtaaa aatcagcaat attgctgtca attttttgat aacggaaatt
     9181 cagcttcggc acaatgccct gccaatgcca agtgcggttc caaaccgcta aattggcttg
     9241 atattccgtg tctaaccgct tatagccaaa caaatagtgc ttgtcggcaa aatatcgctt
     9301 gccaaagccg atacttgcct gcgttgccca gcgttcgcct tgaaaaaccg cccccactcg
     9361 agccagccac ttattcgagc tttgtgcttt ttcccgtgca atttcacgca cgccgtctaa
     9421 atttgcaaaa aaccgcccat ttttgaccgc ttgccactgc acaccgccac tgagttggtg
     9481 ctgatagctg ttataacggc ttgcggttag ctcctcaaaa taccgttttt gcaaatgggt
     9541 aaaactcccc gacaccaacc attgcgaatt aaggtaacgc aaaccgttga gtgttgcccc
     9601 aaattgaaca ttataacggc tactccccag ccaattttgc tcaataaaag gcgaaaaagt
     9661 cagccgataa gcgacggtgc ggtagctata attcggcgaa acggatatgg attgctcacg
     9721 gtaatctcgg ttatcccaat agtaaatccc gctataattg agcgttaaac cgacaaaatg
     9781 attgcctttc acgttgtgca atttactcaa ccctaagcca taacgcacgc cttttgctga
     9841 ttgtggcaaa ctgtctgcat ttttgcggaa aatccgccca tttacattca caatcggcga
     9901 agatgaggca ttattcacgt tatctgtttg ggtatattgc agataaaaat cgggctgcca
     9961 cgcctcattt tcagcaattt ggacttgagt attgcgggca attttagcaa gttccggcgg
    10021 taaatgggct tgaatagcct taaattcctg ctctgccgca cgaaattgct gatcttctgc
    10081 caaaatcaac gccaaatcaa aacgagggta aaccaaactc gggggcttag ctaacagttg
    10141 gcgatagtga aaaactgcgg tttgatgatc ttttttcgca taggcaagtg cggcttgcgc
    10201 atagtgccac aacaacgggt caaaattttc agtttgcgga taacggctta aaagcggttc
    10261 aagcgttgcc caatcttggc tgagaatcgc ttggttaatt tgctgttcaa cattctgatt
    10321 gactgaatac gcaggctgat aagcggtcgg tttttgtgaa ttttttacaa cattttgctc
    10381 aaatttaacc gcttgcggct gacgctcaaa ggaaatcggg tcagtgttgt gttcaatcac
    10441 cttttctgcc catacaacgg ggctgaacag cgaaaataaa aggggatatt ttttcataaa
    10501 gacaaagaaa attggtaggg gcggacctat atgttcgcct ctacgggatt tatcactctc
    10561 tccccttgtg ggagagggtt attagaagct gtaaattgaa atctaaacta ttgtgtctta
    10621 tggtatctac aagcaatatc aagacaaatg ccgtttaatt tttcgttaaa cggcattgaa
    10681 cgttagaaaa ggttattttt ggatatcgcc acgagtgccg gcaagtccaa aattactcac
    10741 ttccccagta agatttgctt ttgtctgaat ttcaccggca atttcctctg catttttacc
    10801 gaaaaattcg actgtatatt ttccagaaag gtttaaagga ttattgccat gtactgttga
    10861 agaaatctga gtattattaa tcgtcccctc ttctaatacg attaagtttc caaattctcc
    10921 ctcaactcta cctgaaccgg tacgcttaga gaaattaaca ttataggtta gatcaccacc
    10981 attaaaacct ttagctccat cgtggttaaa tgcttttcct gaatatgttg cagtaccctc
    11041 tgttggtaat ttctctgttt tcaatccttt aactgtaact gttccatcaa ctttatcaat
    11101 ataattaccg ttttcccagc catttctttg aactgcttgt gctgttacta cagaatatgg
    11161 ctgattatat aaataactct gtgttctgac tgtgacttta ccctcaatag tttctttact
    11221 attaccaagt tttaagccgt aatttgtatc atcaatacct tttgctttaa taatagctat
    11281 aggatctact tctttttctg ctgctaaacg ctccgcttcc gctttctctt tcgccgcttt
    11341 ttccgccgct aaacgttctg cttctgcttt ctctttcgct gccttgtctt ttgctgcttt
    11401 ttctgctgcc gctttatcgg tttgttgctg agtagtttgc ggtttagtat tcggttttgc
    11461 cacattgttt gagctactgc ccgaaccacc actactacac gccgttaaac ccaataaaat
    11521 caaactggct aaagttactt ttttgataga cataaaatgt tccttttgta agataaacaa
    11581 aaatagatgt gtataaaaca cacgcatatt gtacaaaaaa aaaacaactc gtcatcaagt
    11641 actttttaag atttttttgt taaatttctc ctaaatattc tacaatgtca gaggtctata
    11701 tcagcttgaa tacaagcggt tattttttct taaaatttta caaaaggggc ttattatgtc
    11761 tgaaatctca acgctcgcac cgcagctact ttggcagtgg tttgataaag cctgtgctat
    11821 tccgcacccg tcttaccacg aaaatgaact ggctgaattt attgtgaatt gggcaaaatc
    11881 gaaaaatttc tttgttgaac gtgatgaagt gggtaatgtg ttaatccgta aaccggcaac
    11941 taaaggtatg gaaaaccgcc aaactgtcgc tctgcaagcc catcttgata tggtgccaca
    12001 agccaatacc ggcacggttc acgatttcac taaagatccg attcagcctt atattgacgg
    12061 cgaatgggta aaagccaaag gcacaacatt gggggcagat aacggcattg gattggcttc
    12121 gtgcttggcg gtgttggata gcgatgattt agcccaccca accattgaag tgttgctcac
    12181 aatgaccgaa gaagccggta tggaaggggc gattggttta cgcccgaact ggctaaccgc
    12241 cgatattatg attaacaccg acaccgaaga aaacggggaa atttacatcg gctgtgcagg
    12301 tggggaaaat gtgaatgtga cactgccaat tttcttggtg cctcatcagc aagatagtgc
    12361 agtaaccgtt acgcttaaag gcctaaacgg cgggcattcg ggctgtgata ttcacaccac
    12421 ccgagcgaat gcgattaaag tgttcgcccg cattttggaa caagcccaca acgaagtgga
    12481 attccaaatt gcagaaattc aaggcggttc ggtgcggaat gccattccac gagaagccca
    12541 cgcaaccttg gttttctctg caaaaaatca gcaaaaatta accgcttgtt taagccaaac
    12601 cgccgaacaa gtaaaagcag aactcaaaat tgccgagcca aacttccaat ttttaattga
    12661 agaagctcaa ctgcctgagc aagcctttga ccttgccagc actgctcgag taatccattt
    12721 cttaaatgtg atgccaaatg gtgtggtgcg taatagcgat gtggtggaaa atgtggtgga
    12781 aacctcactc agtattggtg tgcttaacac cgaagcgagt gaggtgaaag cgaccattct
    12841 tgcccgctca ttaattgagg gcggaaaaga ggaaattcgc agtaaaatcc gctcattaac
    12901 cgcattagtg ggagcagaag tggaattttc gggcaactac ccgggctggg agccaaaccc
    12961 aaattccaaa atcacgccat taaccaaagc gatttatgat gaaattttag gttatgaatc
    13021 tcaaattaaa gtgattcacg cagggctaga atgtggctta atcaacaaaa tctacccgaa
    13081 tatggatttt gtctcgattg gaccaactat tctcaacgcc cattctccgg acgaaaaagt
    13141 gcatattccg gcagtggaga tttattggaa actcctaacc aaactacttg aacaagcacc
    13201 tgagaaataa atttaatcaa aaaaattata taatcttgcc ccgtaattaa ttgaataaaa
    13261 ccttaattaa ttacggggta gctcttattt tctctgtttt aaaaaatgta ccgtgaaagc
    13321 agcaattaat aagacaactg ctgcacctaa ataaagctcg ttctttttcc agccggcgtc
    13381 taataaaata cctgcaagag ttggggaaac aattgagact aaacgcccta caccgatggc
    13441 ggtgcctacg cccgtgctgc ggaaatccgg tgcgtatagg gttgggttaa tggtataaag
    13501 cccggtaatg cagccgttaa ttaatccgcc aaccaaaatg gctagtgtta tcgcaagccc
    13561 taaattgccg gcaaacacaa aggcaaccac agcagatgca gccagaatac tgaatgcctg
    13621 caaaatatgt tttgccgccc agcgactgac taaaaagccg aaaattaacg agccgattgt
    13681 accaccaact gaaattgcca ttcccacagt ttggctttgg gttttaggca ttccggcttc
    13741 ttctaatagt gccggagtcc aagagctgat aaagtaaaat gaggctgaaa ttgcaataaa
    13801 ggcaagccaa attagcaacg tattgcggcg atattcaggc tcgaataaac gggtaattgc
    13861 cactttgctt ttactttttg cctcaatttc aggaagttcc cagccgtttc ctaagcctaa
    13921 tttaacggca atttgattta aacgagcttt agcattcacc gggtgttttg aaattaaaaa
    13981 ttccaccgat tcgggcaata caaagaataa taaaacgaat accgcaccgg ttaaaatcga
    14041 cccaacgagg aaaaccgcac gccagccata ttctccttgc aataacaccg cagacattcc
    14101 gcccagcatt gcaccaatcc caaagcctga ggcataaatt gcaatcgcta agccacgcca
    14161 tttttggctg gagtattcac tcactagcac attagtgccg gttaaaatgg cggctacgcc
    14221 taaaccggtt aaaacacgcc atacaccaat ttcaaacgca gaagtagcga aataagttag
    14281 gagcattcct aacgtggcta agcctgtgcc gattaaaagc aacgggcggc gaccaaattt
    14341 atcagcaagt ggtgaaagaa agagtgagcc tatcgccata ccgaataaac cggcactcat
    14401 taagctgccg atggctgcac cgtctaactg caattcttct cggatgcttt tggcggtaaa
    14461 ggcgagtgcc attaaatcaa agccgtccag catattaagt aacaccgtaa gcccaaccac
    14521 taaccattgg aatgaagtca ttttgttatg agcaattttt tgacgaatat ccataagctc
    14581 cctctgcatc aaaattgata aaattttatt tagagtgaac tatagaaagt tgattaaata
    14641 taatcaaact caaaatttac ataaaattta tgaaagattt tcatatttaa tcaaaggagg
    14701 gaatttatag caggaatggc gagggagaaa atagataggg cgaataatta ttcaccccta
    14761 gattgaatag gagaaagcta tttcttctcc gcttgctcag ccgctctttt gcgtctgatt
    14821 tctttcggat cagcaattaa cgggcgatag atctcaattc tgtcgccttc ttccaccgtt
    14881 tcattcagtt ttgccgggcg gctaaaaata ccgactttgt tttcacgcaa gtcaatttcg
    14941 gtatattttt ccaacacgcc ggagagcaaa ataatagttt gaatggtcgc gttttgcggt
    15001 acttgcagtt ttttcagaaa atatttatca gggtaagcat aaagcacctc aacattaatt
    15061 ttctgttctt cacttttttg ttcttctgga ttttgacgtt gttcagacac catacacctc
    15121 ttttgcacgt tgtttgaaag catttaccat ttttaaagtt aattcgttga acaccttgcc
    15181 gaacaccatt gctacaattg ggctggaaaa ttcaaaattt aattgcaggg caattttgca
    15241 actttgctca tcaaaggggg tgaatgtcca agctccgtgt aaatggcgga aaggcccttc
    15301 aattaatgcc atctcgattt tatagggcgg cgtcatttta ttgtgggtac tgaaggtttg
    15361 gctaatgcct aatttctgaa tatgtaactc tgcctttaat tcattttcgc cggtgctaag
    15421 ggttttggta ctcacgcagc cggataaaaa ttcggggtat ttttcatact gattaacaag
    15481 ttgatacatt tgctcggcac tataaggcac gagggcagat tgattaacga ttggcataat
    15541 gtctcttttg gaaattaaca agcggtcata ttttagcgta aatttgcaag cctataaaga
    15601 aacacttttg atttgaagat agacctcttg ccccggttgg attgctaatt cattaaaaga
    15661 ccaaaggctg atcgtactcc aaatttgctg attttcgact tgaattgcta aatcaacccg
    15721 ctccaaatgc gtttcaattt tccaaacatt gccttttaac acattacgaa ttgagctttg
    15781 agtcggtttt tgtaagctga tcgaaacctc tttgctggca atagtcaccc ttagcttctc
    15841 gcctatttga tggcgaggga attgcttcac ccataatcgc tgtgcgttca agctcaagcc
    15901 aagcatatta tagtggggaa gtgtttcttc caccggtaat tcaagcaggc taattcgctg
    15961 atgatttggc tgccaagcgg aaaatgccga gctgtgccaa accgctgaaa gggtatcaaa
    16021 tgcggttact ttgccgtttt ccaacagcac aagatgatct gccaatcgaa ctacttcctc
    16081 taaactgtgg ctgacataca gaatcggtat ttcaagccga gcggataatt tatctaaata
    16141 gtccagtagc tcttgcttac gagggagatc gagggcagat aatggttcgt ccatcagcaa
    16201 aatattcggt gagcttaata acgcccgccc aatcgccaca cgttgttttt cgccaccgga
    16261 aaggcttgcc ggatagcgat taagcaaagg ggcaatgcct aacagttcca caatttgcaa
    16321 aaaatccgca gaatccgacc gcttgtagcc atattttaag tttttttcca ccgaataatg
    16381 agggaaaagg cgatgctctt gaaacacata gccaatgttg cgtttttcag gtggtaaatt
    16441 gatgccgttt tggctgtcaa acagcacctg accgtttaat tcgataaagc cggcttgagc
    16501 ggttgaaagc cccgcaatta aattaatcag gctggattta ccggcaccgg aacgcccgaa
    16561 aatagcggtg attcctttat tcggcaaatc gagattgaca ttgagcgtca gattgccgag
    16621 ttgctgaaga agtttaagtt tgagcatagc gtttttgcct ttctgccagc cattccgaac
    16681 agaatagggc aatgagtgaa atcagaatcg ccaccaagca caaacgggcg gcagccattt
    16741 cgccatcggg ggtttcaata aaggtgaaaa gggcggcagg aatggtttgg gtttggttgg
    16801 gaatgttgga gacaaaggtg atggttgccc caaactcccc caaagagcgg gcaaaaccca
    16861 gcacgccacc ggcaataatg cctgaaaaag agagcggtaa ggtgagcgtg aaaaatactt
    16921 ttaacggtgt cgccccaagc gttctggcgg cttgctccaa tttaggatcg acggcttcaa
    16981 aagctaaacg gatagaacgc accatcagcg gaaacgccat caccattgag gcaagcacag
    17041 cccctttcca cgaaaaactc aagctgaaat gaaaccattc ccacaaatat tgcccgatta
    17101 cccctcgttt tgccatcgag atcagtaaca aatagccaat gacaaccggc ggtaaaacca
    17161 gagggagatg cacaatacca ttgagtagat ttttgcccca aaactgtttg cgggcaagca
    17221 gccacgccac ccacaccgca agcggtaatg caagcactac ggcaatggag gcaactttta
    17281 ggcttaaaac aatcgcattg agttcttgtg gggtgaaatt aagcataatc taaaactatt
    17341 cggttataag cttaccctcg ccccttgtgg gagagggata gatttttctt cgttcagaag
    17401 aaaaatcagg gagaggggga atatcttaaa cgctatttgc cctctctctg aaaaatatgt
    17461 ctgaacgaca tatttttctg tctcgatact cgcttcgctc gctcctacag agccgttgga
    17521 aaagccaacg ttcaaacgca agcgtttgtc ccacaagggg agagagtaaa tttaatttac
    17581 aggataaaac cctgctgctt caaatttcgc ttttgctttc ggagttttga ggaaatctaa
    17641 aaatgtggcg gcagaggctt tttcacttac tgccgcagca gggtaaacaa tttcgccgta
    17701 gctttccggt gggaaaacgg aaaccacttt gactttattc gacactttgg cgtcggtgga
    17761 atagacaatc ccaagcgggg attcgcctcg ctcgacaaaa gaaagggcat ctcgtacatt
    17821 ttttgccctc gctaaacgag gttcaacact tccccataat tggtaatggc taagagcttt
    17881 tttggcatat ttgccggcag gaacgtggtt tgggtctccc accgataaat agctgtttgc
    17941 taattctttg gcaaaatcga ccgcttgtat cgcttttggc tcgatgttgc tctcggttgg
    18001 tgcaattaat actaactcgt ttctgactaa attgcggcga tatttaacct tctcaggttg
    18061 tttttcggca acataatcca tccacttttg gtcggcggaa ataaaaatat ctgccggtgc
    18121 atcttgctca atctgctttg ctaataccga tgatgaagcg aaggagaacg tgattttatc
    18181 ctgtggatag gctttttcaa aatcctgctg aatatcttgt aacacatttg tcattgaagc
    18241 ggcagcaaac acggtaatct cttgtgaaaa ggctgtgcct gataacgtta atgccattgt
    18301 aattgctagt ttttttaatg ctttcatttt cataacctca caattagtta agaacgcagc
    18361 ccaacccctc gttgaattaa ggaataggca ataatataca agccgatgca aagtgaagta
    18421 agcactgcaa aagtataacc taacggcaca tcgctgatac cgagaaagcc atatcttaag
    18481 ccgttaatca tataaacgat cgggttgaat ttagacaccg tttgccaaaa ttcaggcagt
    18541 aatgaaatag agtaaaatac gccgcctaag taagttaagg gagtaagcac aaaggttgga
    18601 atcagcccca catcatcaaa ggagcgggcg aacaccgcat taattacgcc acctaacgca
    18661 aaggcaatga ttgtcagcaa cagggttaag acgataatcg caaccgagta gatttcaaac
    18721 gagacaaaca ccattgccac gcacattact aaggttgcgg ctaaacctgc acgcaaaata
    18781 ctgccggtga cataacccca aataatatta tgggtagaga gtggcgaaat cagcatctct
    18841 tcaaaatctc gggtaaattt actcaagaaa aatgaagagg cggtattcac ataagaggcg
    18901 gtgatggcgg tcatcataat taagccgggt gcaataaatt gggtgtaacc cacgccattc
    18961 atttccccga ttcgcccacc aatcagcgtg ccgaagatta aaaaatagag cgtggtagta
    19021 atcaccggtg gcactaaagt ttgtcgccaa atccgcaaaa tgcggcggca ctctttgtaa
    19081 gctaaggtat aaaatccgat taaattcatt ttactgagcc atattgataa atagttcttc
    19141 caagcggttt gatttgtttc gcatacttag cacctcagcc ccttgggcgg aaatttgcga
    19201 aaacagattg gttagccctt gctggcgttt tacattcact tcaagggtgt tttcatcaag
    19261 ccatttatgc gggtaatttt gaatcacaag cggttgattt tgctcagaat tttgcaaatc
    19321 taacacaaat acctcacttt ccaatttggc aagcaaggct ttcattgagg tgttttcaat
    19381 taattcgccg tgttgaataa tgccgatgtg acggcatagg gtttccgcct cttctaaata
    19441 gtgggtagtg agaataatag ttgtgccttg attgtttaga tcccgcaaga aatcccacaa
    19501 tgagcggcgg agttcaatat ccacccctgc ggtaggttca tctaaaatca gtagttttgg
    19561 attgtgcatt aaggctcggg caatcatcac ccgacgtttc attccaccag aaagctcacg
    19621 ggtgaggtgg gtgcgttttt cccataggtc gagcaatttc agccactttt cggcacgtac
    19681 taaggcttca ctgcgaggaa tgccgtaaaa cccggcttgt tgcactagca catcaatcac
    19741 tttttcaaac tgattgaaat taaactcttg tggcactaag ccgatttgat gctttaattc
    19801 gactttttgg gtgtctaaat catagccaaa cactttcacg ctgccgctgg ttttatttac
    19861 cagtgagctg ataatgccaa tagtagtaga tttacctgcc ccgttatgcc caagtagggc
    19921 atagaaatca ccttgctcga ccacaagatt aatgccttta acggctttta cacctgttgg
    19981 gtaggttttt accaaatcaa ttaattctaa tgctttcatt tgttttactc agtttccgcc
    20041 accgctcgaa tggtcgattc atcaatttgt gcatcaaaag cgttgcgaag taacattaat
    20101 ttttcatcgt taagcagagc tgattttgct gcctcagtta attgtttgaa aatggctcgc
    20161 cgaatttcaa gcggagtttg ctgttcgcta ttgtcaccaa tggtcaattc gtatgaatag
    20221 ccttttttgg caagggcagc ttctaaattt ttacgtgatt ccggattatc taagtgagcc
    20281 atattcggct ttaacaccaa tgcgaggtgc tgttcatttt gttccgctaa atagctattt
    20341 aaggcgatct gacgggaaaa tccgcctaaa ttgagtgagt tggcgatgtc acaccattta
    20401 tcctgctgac aagataaatg aatggttttt gccactaatt caggggtgcg ttcttgcaaa
    20461 atcgcttgtt taatatcaga aggtttggca ctgtctgctt gattttctaa ttcaggattg
    20521 agccacgtcc agcgataatc ttcatcttcc acacttttag gggcggattc ggttttcttt
    20581 gaaacttgca gtacggcttt gtgctgattt tccgccaagc tgataaaccg ctcttgcaat
    20641 gaagcggtct gatttgccga tttttttgca ataacttgag gggcttttag ctcaggcttt
    20701 tttttttcgg tttgagctaa atttgcctgc tgtgcttgta gctttttgcg ggcttcgagg
    20761 gctgccattg ccggtgaaag agtcgcagga gcagacggcg aaatagcggt atctactgcc
    20821 tgtggcggtt gagcaatgct ttcaaccgct gtggtagtat tggcaacagt aaccgttttt
    20881 tgctgatttt gctcaaaatt ttctcttagc tggctaattt gattttgtgg ttttgctgtc
    20941 gtaaccgctg aaaccgaatg gtttggttgt gtaacctttt ccactgcaac tgttgctatt
    21001 ttttctgcct gtttagggtg gaaagccaac gcacgcaaaa tcgccatttc aacaccggca
    21061 cgttgctccg gtgcaaaagg caactctttt ttactgttga ggattaattg atagaaaaat
    21121 tgcacgtctt cgggcggaat ttgttttgcc agaaaatgca ctaatgtttc ttcggttgta
    21181 ggtgttttca ctaattgcaa cattgcaatt ttgtgtaaca cttctgccac atcgcttaat
    21241 aattgttgcc aatcaacgcc tttcgctgca atttgctcga tgatcgccat tgctttttca
    21301 ccgtcggctt gggcggttgc ttgcactaat tctagtggtt gattatcgtc aatcaaccct
    21361 agcatttggc tgactatcgc aagcgtaata ttggcattac tcattgcaat ggcttgatcg
    21421 gtgaggctga gagagtctcg gatactacct tgtgctgctt ttgccaactt ttctagtgcc
    21481 aaaggctcaa acggaatgtt ctctgcattt agaataaatt caagatgacg ggcaatttgc
    21541 gattgctcta atgcccgcag atgaaattgc atacagcgag agaggatcgt aatcggcagt
    21601 ttttgcggat cagtggtagc cagcaagaat ttgacatatt caggcggctc ttcaagggtt
    21661 tttagtaagg cgttaaaact atgacgagag agcatatgca cttcgtcaat taaataaacc
    21721 ttaaaacgcc caacggtggg tttgtattga acgttatcaa gtagctcacg ggtgtcttcc
    21781 actttagtac gagaagcagc atcaatttca atgagatcga taaaatgccc ttcttcaatc
    21841 gctttacaat tcgcacattc accgcaaggc tcggcggtga tcccgtttac acagtttaag
    21901 cctttggcga ataaacgggc aatagaggtt ttacccacac cacgagtgcc tgaaaacagg
    21961 taagcgtggt gcagtctatc ttctcttaag ctgttttcaa gagcagataa aacgtgttgc
    22021 tgaccaacta cttccgagaa gcgttgcggt ctccatttac gggctaaaac ttgataactc
    22081 attgattttt ctattcaatt tggaaatcac aagcggtcat ctttccgaaa aattttgcaa
    22141 aattttagca aaaagccacc gcttgttccc cattaatgac cttcaaagct gactaggcta
    22201 aaggatttaa tcccttcttt ttccaaacgc tctttaccac ctaactcagg cagccaaatc
    22261 acaaaggcag cgtgttctac gttaccacct aagcgacgaa ttagttttgc agttgcatca
    22321 atagtaccac cggttgcgag taaatcgtcg atgaccaata cattatcatt agcactcact
    22381 gcgtctttat gaatttctag cgtgtcttca ccatattcaa gcgtgtaaga ttgcgaaatc
    22441 acttcacgtg gtaatttttt cggtttacga accaacacaa aaggcacgcc taacgctaat
    22501 gcaacagggg caccaaaaat aaacccgcga gattctgtgc cgacaatttt agtaatacct
    22561 ttgtctttaa attctgcaac gatggcatca atggtggctt ggaatgcagt tggcacttct
    22621 aaaagtgaag tgatatcacg gaagataatc cctgctttcg gataatctgg aatggatttg
    22681 atagaagatt taattaaatc taattggttc attgtttgac ctacgtgtaa taaaaaaata
    22741 actggaaaac tctatagaaa aacagcagaa atttcaagga gaaattgata accttacgtt
    22801 tgatagtaca gcttactttt cagtttcctt ttccctatat tatagataaa tatcttccct
    22861 gtttcgtctg gttttaagca aacgtaaaat ccaaacatac tgctcggggt ttttctccac
    22921 aaaatattca attactcggt tcatttctcg ggcggattga attgggtctc ctgaaaattc
    22981 aagcggtggc aaaatttcca tttcatattt tgctttttcc gcattataaa tcgagaacat
    23041 tgggatcact tccgcatttg ccactcttgc cattttattt aagcccggca aagtggcttt
    23101 ttcggtggca aaaaagtcgg catacacact tagctcttcg ccgaaatctt catcgggcag
    23161 aaaataaccg acatcacctt tacgcacatc ggctaaaaac gctttaatcc cattttgacg
    23221 agtgtgcatt cgcccaccta aacgctcacg ggtaatattc cacagccagt ccaccaacgc
    23281 attacggtgt ggattgtaca ttgatgtcat cggataaccg agcgagaaca tcgccacccc
    23341 cgccatatca atcgaccaag tatgtggcac taacataatc acgtttttac cgctctcttt
    23401 ggctttcacc acattttcaa atccggtaaa ttcacaccgt ttttgtaaat aagaggccgg
    23461 gcggattgca gtttcgccaa tcgccaacat ggtttgtgct accgtgataa acattttctc
    23521 gaccacttct tcacgctttt tctcactcca atcgggaaaa cagtaacgca aattcacttt
    23581 agcacggtgg tagccttttt tatttttctg cttgagatag cgatacgcca tcttacccac
    23641 aaaagcggat aatttatccc taattcgcac cggcacatag gctaaaatca ctaatcctaa
    23701 tacacctaac catacgcccc aatatttcgg gtgtagaaaa gaccatagga atttgtgcgt
    23761 atagccgtct tgggcggtaa ttcgtgtcat tctataattc ctcattattt gtcactttct
    23821 ttgcttcgcc aaagaaagta accaaagaaa ggcaacccta cttcaccgct atcttcgctt
    23881 ggtttgaatt tgcttaacga aaaaattcca aactcgccgc ttcgctgctc aaacaaggaa
    23941 tttttcctac aaattcaaag tcgctcaggc ggttcagaag ggaacccggc agagcatcat
    24001 tttgcaaaat ttttcaaaaa aatcaccgct tgtatggtcg gatcgggttc ctttctgagt
    24061 tgcccgaacg acttgaaatt tttaggaaaa taactcgagc gagagcgaag cgaacatcag
    24121 ggttattttt cgttaagaaa atttcaacca agtgaggata gcaacaaagc agggtgtgct
    24181 ttcttttggt tacttttctt tgcacaagca aagaaaagtg acataacaca tcatctctta
    24241 tcaataatat tcttcaccgc caatatcacc ccaagcccaa taaaagcccc cgggggtaaa
    24301 attgccagta gtaaacctga atcaatatgc aatacatcaa tgcgtagggc ttttgcccaa
    24361 tcgccaagga gtagatctaa gcctgaaaac agcgtgccgt tgccaataat ttcacgcaac
    24421 gcgcctagca ccacaaggct aaaagtcatt cccagcccca ttgaaaagcc gtcaaaagcc
    24481 gagaatttga cctcattttt tgaggcatag gcttctgctc gtccaatcac gatacagttg
    24541 gttacaatca gcggaataaa aatcccgagc gattggtaaa cagggaaagc aaaagcattc
    24601 attaaaagct gtactgccgt taccaccgtt gcaattacca tcacataaat cggaatccga
    24661 atatcgtgtg gagtgatttt ccgaaacagg gaaaccgtga tattggtgca aattagcaca
    24721 aacattgttg ccaagcctag tccaagtgca ttggttacgc tgtttgaaac cgccagtagt
    24781 gggcaaagcc ctaataattg caccaaagca ccattatttt tccacacacc atcagcgaaa
    24841 atcgttttcc aaacgctgga ttgtttcggg gcaacgtcaa tattcgtcac agggatttgt
    24901 tgttctcttt ccatttctcc ccctatttgc acgctttaaa ttgattaaac attgtcgggt
    24961 tttgagccag ctctgtcacc acccatttcg cactttggcg gatatgattg accaccgcac
    25021 gaggtgtaat agttgcaccg gtaaattggt cgaacttgcc gccatctttt tttacattcc
    25081 aatccgcttc gttttctaaa ctaaaaagtt gattggtaaa agataagatc caatccgaca
    25141 ctcgggtctc aattttatct cccagccccg gagtttcttt atgctcaagg gtgcgaacgc
    25201 ctaaaatgtt gccgttcggc tcaatcccca tcaatagcac aatatcgccg gaatagccgt
    25261 ccggagccgt tccttgaact aggtaagcgg tcagattttc cgattttttt gcaacataaa
    25321 tacggttcaa ataaggggca ttttcgagct gaaccagttt gcaagtcgcc aacacatcat
    25381 tatcaaaatg gcttttcggc acaacctctt ccaataattt gcgttgttgc attgcggtta
    25441 catcatcaat cttgcctttg gtaagcaggt acacaccggt tgaaacagcg gtgcaaagca
    25501 aggcaataaa gcctaaaatt aaggcgtaat ttaaggtaat ttttgaggtg ttcattatct
    25561 gttatccaat tttgtgccgt ataatctcgg ctgcgtataa tggtcgatta acggtacgca
    25621 aatgtttgcc aataacactg aaaatgcaat cgcatcaggg taatttccgt agtagcggat
    25681 tagataaacc aataatccca ccaagccacc gaaaatcagt tttcctcttg gggtaatgga
    25741 ggctgttacc gggtcggtcg caataaaaaa tgccccgaac atcatcgcac cgctaaagaa
    25801 atggctcaca aaatgcaagt gcgattgttg gctaaacagc tcggtgaatc cactaaaaaa
    25861 ggcaaaagtt gccaacattg ctaccggaat ttgccaatgg ataatccgtt tataaatcaa
    25921 caccaaaccg ccgaataaga acgcaaggtt cagttgtagc caaccggtcg caaacagccc
    25981 gttgaaaatc ggcgtattca ttaccgcgtc aaaacctgat tttgcaaggc tgcttttcat
    26041 actatcaagc ggggtagctt gtgcaatgcc atcaacacta ttaactagct gatgaatact
    26101 aaaaccatcg ctagttaccc cgtaaaaaat caacgaaatc gcatcacgaa atgtcggtgg
    26161 ttcacttaat aactcaatcg gcactatcca cgccgtcatt tgcaccggga aagaaaccaa
    26221 caacaacgca tagccaacca ttgccgggtt aaatagattc tgccccaagc caccataact
    26281 gtgttttgcc aataataacg ccacaatcac gccaatcaac acaagccaat aaggagcata
    26341 aggcggaatc gacatcgcca aaatcaaggc ggttaaaata cctgataagt cagccaaata
    26401 gaaagcggtt gtttttttgc gtaattttgc aatcccgatt tcaatcacaa tcgcaaggct
    26461 aacggcaagc aacgtttgaa tcagcacacc atagccgaaa taataaagct gaaccccaaa
    26521 agcaggtaag atcatcgcaa tcacccacag cataaaattc gcagtgagat tgctcgaatg
    26581 agtgtggggg gaactgacca ttttaaacat ctataaaacc tttttagtaa aaaattgcaa
    26641 aaaaatgacc gcttattaaa gtctcggcaa attcaaatta aagcgtattg ccagcaggcg
    26701 gataataatt acggtgaaca cggtggcaag gtaaacccaa tcgctttcga gcccaactga
    26761 gtttgcagcc acaaaaatca caccaccgat aaggctggcg gtcacataca cttctttttg
    26821 caaaatgatc ggcacttcgt tgcgtaaaat atcacggatt aagccaccaa aacagcctgt
    26881 cacaccgccc agagccacac agatcagtgg gtgcaagccg aaatccaagc ctttttgcac
    26941 gccaatcacg gtaaatacgc caagcccgat ggcatcaaac accagcaagc cggtttgcca
    27001 acttttgcgg gaaatttggt tgcggaaaat agcggtaatc accactgcaa gggtaatcat
    27061 cagcacatag atcggttgtt tcatccaaaa caccggcgtg gagccaatca tcatatccct
    27121 tagcgtaccg cccccgaccc cggtcacaaa cgctaaaata aacataccga aaatgtccat
    27181 tttgtgctgg cgggcagcaa ttgcccccga aatcgcaaac acgatagtgc cgattaagtc
    27241 ctgaataaac aggaacgacc acggcaatgc cggaattagc tcgctaaaca ttgttgcttt
    27301 tctcctgctg agcggctttt ttcgctttag ctctggcgat ggcggccgca acggcggctt
    27361 tgcgtgggtc ttcgctttcc gttttgggcg aatggttatt cgcccctaca gatttatccg
    27421 atgtagtttc gttcattgat tgtaggggca aatcattatt taccccaatc acagcattgg
    27481 caatatcttc cggtttttcg accgcttgtt gagcttgttt tttcgcttta gctctagcga
    27541 tagctgctgc aacggcggct ttgcgtgggt cttcgctttc tgtttcgggc gaatggttat
    27601 tcgcccctac agatttatcc gataccgttt cgttcattga ttgtaggggc aaatcattat
    27661 ttaccccaat cacggcattg gtaatatttt ctgatttttc gaccgcttgc tgtgcctgtt
    27721 ttttggcttt ggctcgggca agggcagccg caacggcggc tttgcgtggg tcttcgcttt
    27781 ctgcttcggg cgaatagtta ttcgccccta cagatttatc cgatgcagtt tcgttcattg
    27841 attgtagggg caaatcatta tttgccccaa tcaaggcatt tgtaacattt tccgattttt
    27901 cgaccgcttg ttctgcctgt ttggctaaac gtctggctct gcgttgtgcc attaaatcgc
    27961 tgttatcagg ctcgccgtta ggttttacct gtacttctgc cggtatttct tggactgttt
    28021 caaccgcttt tttcgctttc aggcgttcaa gagccgcttt tacaggatca acaccacctg
    28081 catttgccac ttcttcacgg cgtttttccg ccgcttggct aatgcgagca gttctggcat
    28141 ctcgttcttt ttgtaagcga gcttctctcg cctcaaagcg gattttagcc tcttccgctt
    28201 tgcgggcttt ttcctcaatt tcctcgattt ttgctttttc ttggcggaaa tattggatta
    28261 acggaatgta gcttgggcaa acgtaagcac aaacgccaca ctcaatgcag gcatctaaat
    28321 ggtattcttt cgatttatcg tgatcttctg cacgggcaaa ccaataaagt tgctgtggca
    28381 ataaccccac cgggcaagca tcggaacagc ttgaacagcg gatacaacta cgctccggtt
    28441 caggtggtgc atattcaaaa tgatcagggg caatcaagca gttcgcagtt ttggtaatcg
    28501 gggcttgcaa tgcaggcaaa ataaagccca tcatcggtcc gcctaaaaac accggaaagc
    28561 gtttatcggc ttgataatct acctgctcca acaagtgctg aattggcgtg cctaatcttg
    28621 cccacacgtt ccccttgttg cgaattttat cgcctgtcag cgtcactacc cgttcaatca
    28681 aaggttcatc atcaataatt gcccgtttaa ccgcaaacgc cgtgccgaca ttgtgcatca
    28741 caatgcccat ttcaatagtg cgtttgccag ccggaatctc aagtccggtc aacacttgaa
    28801 tcagctgatc agaagctccg gagggatatt tagtcgggat cgcccgcaca aacatatcgt
    28861 tcgagccttt taaagcggtt tctaaagctt gaatagcgtg cggtttgttg tcttcaatcg
    28921 caatcaccac ttcttccggg cgaagcacat aacgcagaat gcgaatacct tcgataagat
    28981 ccgcagtgaa atcttgcatt aagcgatcgt cacaggtgat gtaaggctca cattctgccc
    29041 cgttaatcac cagtaattta cagcgtttat ccgccaaact taattttgtt gcggttggga
    29101 ataccgcacc gcctaaaccg gcaatgccat attggtaaac tttttggata atttgatcgc
    29161 ttgttaggct taaaaaatcc tcaatcggct ggcgttccac ccatttatct ttaccatcgg
    29221 tttcaataat caccgttatt tcgggcaaac ctgaggcgtg agcggaaaca taaggctcaa
    29281 tcccaatcac ccgcccggag gttgggctgt gtacgggcag ttgacggaag tgatcgcctt
    29341 tcgtgagcgg ctgccctttc aataccacat cgccgacttt gactaataat tcccctgccc
    29401 agccagaatg ttgaaccagt ggcacataga aaaacttcgg taaatttaag gtgcgaattg
    29461 gcttgctgtt tgattgggat ttattttcca tcgggtgaat accgcccggg aaatcccaca
    29521 gtttacccgt ttctttattt tggcggattc gctcaatcac taaattagga ttgctcattt
    29581 ttgcctccgc cggtaactaa ttttctctgc aattcagtgg tattcacaat cggaataatt
    29641 aaatcttggt caaatttcca gttccaagat tgggttgtcg gtttaattgg tcgcatttca
    29701 atacagttgg tcgggcaagg ggcgacacaa agttcacagc cggtgcaaag atccggaata
    29761 atggtgtgca ttgctttatt cgtgccgata atcgcatcaa ccgggcaagc ctgaatgcac
    29821 ttagtacagc caatgcagag atcttcaatc acaaaagcca ctttcatctc aggctctacc
    29881 ataccttcca ttggcggcac ttctacccca agcaattcgg caagattcac cactaaaggt
    29941 tgtccacccg gcacacattt agtgatcaca tcaccattag caatcgcctc agcataaggc
    30001 ttacagcccg ggtagccaca ttgaccgcat tggctttgtg gtaaaagggc atcaatttga
    30061 tcgacaatcg ggtcggattc aactttcagt ttaatcgagg aatagcctaa aaccgccccg
    30121 aaaatcagtg cgatcacagc aatagcgata agaatataag cgataattgg caaatcaagc
    30181 attagagttt caccaatcct gtaaagccca taaaggcaag cgacatcaag cctgcggtaa
    30241 tcagagcaat tgatgctcct tggaacggac gaggcacatc agcggcagcc aaacgctcac
    30301 gcagagccgc aaataaaact aacaccagcg agaaaccggc agcggctcca aaaccataaa
    30361 gaacagattc caccaagtta ttggctaaat tcacgtttaa taatgccacc cctaatacgg
    30421 cacagttggt ggtaatcagc ggtaaataga tcccaagcaa gcgataaagt gtcgggctgg
    30481 ttttatgcac aatcatttcc gttaattgca cgatcaccgc aatcactaaa ataaacacca
    30541 aggtacgcaa aaattgagcg tttaacggct caagcaaata ggtttccatc aaataagcag
    30601 agagcgaggc aaccgtcagc acaaaggttg tcgccaaccc cataccaata gcagtttcca
    30661 cctttttcga cactcccata aacggacaaa gccctagaaa tttaactaag acaaagttat
    30721 taataagggc ggtgctgatg accaacagaa tataatcgac cataaattcc acaaaattaa
    30781 atatacaagc ggtcaaaaac gcattttatt ttgcaaaaaa cagagaaaat ctgaccgttt
    30841 gttaaagcat ctcattaaaa ataaacgtta tattatctct tgttttcggc tcattcacaa
    30901 taagaaatca gaggtacttc tagtaaacat accatatcaa atatgatctt gttacctttg
    30961 tttctatctc tggtagaatg gagaatgtga ggactaagct atacagcatg aaaggtgaaa
    31021 ggagcttgat tttctaagtt aatcctaaaa agtctcactc ctttgatata gaggata
//
LOCUS       DANLUT010000011        27468 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLUT010000011 DANLUT010000000
VERSION     DANLUT010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27468
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            94..1320
                     /locus_tag="PXB38_000447"
     CDS             94..1320
                     /locus_tag="PXB38_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL5352810.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIEPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPGYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            1377..2753
                     /locus_tag="PXB38_000448"
     CDS             1377..2753
                     /locus_tag="PXB38_000448"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL5352811.1"
                     /translation="MISVFDMFKVGIGPSSSHTVGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(2808..4397)
                     /gene="purH"
                     /locus_tag="PXB38_000449"
     CDS             complement(2808..4397)
                     /gene="purH"
                     /locus_tag="PXB38_000449"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL5352812.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVAGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            4569..4838
                     /locus_tag="PXB38_000450"
     CDS             4569..4838
                     /locus_tag="PXB38_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5352813.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(4925..6370)
                     /gene="dacB"
                     /locus_tag="PXB38_000451"
     CDS             complement(4925..6370)
                     /gene="dacB"
                     /locus_tag="PXB38_000451"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL5352814.1"
                     /translation="MIFKNFTRAFLNKFILSTLLIPSITQAEINTEELLNTLPAGTSV
                     SFIAKNLDTNQIITQYQSDIFMLPASTQKVFTALAAKLTLTDDFRFQAALLSNGKVEN
                     GVLKGSLIARFSGDPELTSGQIYQLISKLKQQDINKIEGDLILDTSVFASHDKASGWI
                     WNDLTMCFNAPPAAINVDHNCFYVTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPK
                     EAPFCQLDVVVHDNNRYQIKGCMARQSQPFGLSFSVQDPTNYGANIIKAHLKSLKIAF
                     NGQVKESLTAQNGTLLAEHYSEPLPVLLKKMMKKSDNQIADALFRTVANKQHNRPASF
                     QLGSYVIRRLLKTKANIDFKNSVVTDGSGLSRHNQVSSRTMLESLEYIAQNEESLKLF
                     ETFPIAGVDGTISGRGSISTEPLAKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFI
                     NGYSTGELESKTKRAPLNTFENKFYMALFNE"
     gene            6467..6943
                     /gene="greA"
                     /locus_tag="PXB38_000452"
     CDS             6467..6943
                     /gene="greA"
                     /locus_tag="PXB38_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL5352815.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(7000..7416)
                     /gene="ndk"
                     /locus_tag="PXB38_000453"
     CDS             complement(7000..7416)
                     /gene="ndk"
                     /locus_tag="PXB38_000453"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL5352816.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAINHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(7426..9504)
                     /gene="metG"
                     /locus_tag="PXB38_000454"
     CDS             complement(7426..9504)
                     /gene="metG"
                     /locus_tag="PXB38_000454"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL5352817.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYMASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            9716..10687
                     /gene="menC"
                     /locus_tag="PXB38_000455"
     CDS             9716..10687
                     /gene="menC"
                     /locus_tag="PXB38_000455"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL5352818.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            10932..11633
                     /gene="rsuA"
                     /locus_tag="PXB38_000456"
     CDS             10932..11633
                     /gene="rsuA"
                     /locus_tag="PXB38_000456"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL5352819.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            11623..12804
                     /locus_tag="PXB38_000457"
     CDS             11623..12804
                     /locus_tag="PXB38_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL5352820.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHKPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(12944..14263)
                     /gene="rlmD"
                     /locus_tag="PXB38_000458"
     CDS             complement(12944..14263)
                     /gene="rlmD"
                     /locus_tag="PXB38_000458"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL5352821.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTISLFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            14348..15673
                     /locus_tag="PXB38_000459"
     CDS             14348..15673
                     /locus_tag="PXB38_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL5352822.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDDNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            15794..16093
                     /locus_tag="PXB38_000460"
     CDS             15794..16093
                     /locus_tag="PXB38_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352823.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            16254..19166
                     /gene="rapA"
                     /locus_tag="PXB38_000461"
     CDS             16254..19166
                     /gene="rapA"
                     /locus_tag="PXB38_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL5352824.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKSELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            19293..19589
                     /locus_tag="PXB38_000462"
     CDS             19293..19589
                     /locus_tag="PXB38_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5352825.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            19573..19815
                     /locus_tag="PXB38_000463"
     CDS             19573..19815
                     /locus_tag="PXB38_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL5352826.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALSKMWIAEKLPVQSPR"
     gene            19827..20495
                     /gene="rluA"
                     /locus_tag="PXB38_000464"
     CDS             19827..20495
                     /gene="rluA"
                     /locus_tag="PXB38_000464"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL5352827.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(20473..21048)
                     /gene="ampD"
                     /locus_tag="PXB38_000465"
     CDS             complement(20473..21048)
                     /gene="ampD"
                     /locus_tag="PXB38_000465"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL5352828.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            21108..21950
                     /locus_tag="PXB38_000466"
     CDS             21108..21950
                     /locus_tag="PXB38_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL5352829.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSAQPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            22073..22714
                     /gene="pyrE"
                     /locus_tag="PXB38_000467"
     CDS             22073..22714
                     /gene="pyrE"
                     /locus_tag="PXB38_000467"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL5352830.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYDCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            22888..23965
                     /locus_tag="PXB38_000468"
                     /pseudo
     CDS             22888..23965
                     /locus_tag="PXB38_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(24026..25216)
                     /gene="metC"
                     /locus_tag="PXB38_000469"
     CDS             complement(24026..25216)
                     /gene="metC"
                     /locus_tag="PXB38_000469"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL5352831.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     DHILMTGAAYEPTQEFCNVLLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPSIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(25275..25814)
                     /gene="dsbB"
                     /locus_tag="PXB38_000470"
     CDS             complement(25275..25814)
                     /gene="dsbB"
                     /locus_tag="PXB38_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL5352832.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLILSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(25877..27418)
                     /gene="nhaB"
                     /locus_tag="PXB38_000471"
     CDS             complement(25877..27418)
                     /gene="nhaB"
                     /locus_tag="PXB38_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL5352833.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRVLPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WVVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
BASE COUNT         7954 a         5410 c         6145 g         7959 t
ORIGIN      
        1 tttgatcaaa aaatacgtaa aatcttgttg tgttactgtt tcccatcgct aatatagcat
       61 agcttgttag ataattcttt aaaggagatt actatggcta tgccatctca acgtttttct
      121 cttacttggg tactaaattt atttggtact gcggtaggag ccggcgtttt atttttgcca
      181 attaatgcag gtatgggtgg gttctaccca cttattatta tgactttgtt agttggacca
      241 atgacatatt tagctcaccg tggcttaaca cgttttgtgc tttcttcaaa atacaaaggg
      301 agcgatatta cggctgttgt tcgtgaacat tttggtgaac aggccggtaa attgatcacg
      361 ctactgtact tctttgccat ttttccgatt ttactgattt atggtgtagg tattaccaat
      421 accgtgagtt cttttatgga gaatcagctt catatcgcgc caccatctag ggctgtatta
      481 tcgtttatgc taatagctgc tatgatcgga gtaatgttat taagtgagca agtcatgtta
      541 aaaatcacaa cttgtcttgt gtatccatta gtgttgattt tattgggctt atctatttat
      601 ttaattccac agtggaatac agctgcctta cagcaaatgc caactacagg agacttcctt
      661 actacacttt ggctgactat tcctgtttta gtctttgctt ttaaccattc gccggctatt
      721 tcttcttttg cactttctca acagaaatat taccaagatg acaagaaggc tgaaattgaa
      781 tcagctaaag tattacgttc taccgccttt atcttggtgt tatttgtgat gttctttgta
      841 tttagctgtg tattaacttt gacacctgaa gaattagcac aagctaaagt gcaaaatatt
      901 tcgattcttt cttaccttgc gaataaattt gataatccga ttatttccta ttttggaccg
      961 ttggttgctt ttttggcgat tggtagctct ttctttgggc attatttagg tgcgcgcgag
     1021 gggttagaag gattggttaa tcaaatgcgt aaagagccga ttgagccaag caaattccgc
     1081 aaaattaccg ctattacttt tttgatcatt ttatggattg ttgcgactat caatccaagc
     1141 attttaggct tcattgaaag ccttggtggg ccgattattg cgatgatctt gtttattatg
     1201 cctggctatg ccgtatataa agtaccggca cttgcacgtt ttaaaggtga atttggccat
     1261 ttatttgtgc ttgttatggg ttgtattgct atttcagcaa tagtatatgg gttactgtaa
     1321 tctttctaaa atcaatgtag aatacgccct tttattttct atgtgaattt gtgtttatga
     1381 ttagtgtatt tgatatgttt aaagtgggga ttgggccttc cagttcccat actgtggggc
     1441 cgatgaaagc ggcaaaggaa tttgttgatg agctacaaaa tcgcaaattt ttaaacaaaa
     1501 ttgaccgctt gcgggtagat gtctatggtt cattatcact caccgggcga ggacataata
     1561 cggatattgc catcataatg ggattaatgg ggtatttgcc tcataatgtg gatattgaac
     1621 gtattgagca gacgattgaa aatctaaaac aaaataagca acttatcatt gctgaaagca
     1681 gtgttgagcc taaagtgatt gcgttcgatt tttatgagga tatgccattt catcgagatt
     1741 tcttacctcg gcacgaaaat ggtgtgaaat ttagtgcctt gagcggtgaa gagttgctat
     1801 ttcaaaacac ctattattct attggtggtg gctttattgt tgatgaagct aactttgagc
     1861 aagttaaaaa ttcagatctt tctgttccat tcccatatca gaatgcagca gatttacttg
     1921 cacattgtaa gaataacggg ttaccgcttt cttctttagt ctggaaaaat gagcttgctt
     1981 tacgcagtag agtagaaatt tcggattatt tggcaatgat ttggaataca atggaagcct
     2041 gtattgagcg tggtttgaat acggaagggt tactacccgg gcctctgaaa gtggtacgcc
     2101 gtgccagtgg gctacgcaga atgttagagg caaacagtaa attcaatacc gacccaatgc
     2161 aaattatcga ttgggtgaat atgtttgccc ttgccgtgaa tgaagaaaat gcggcaggtg
     2221 ggcgagtagt caccgcacct accaatggag cctgtggtat tgttccggct gtgttggcgt
     2281 actaccaaaa atttattgca cagcttaatc aagatactat tgagcgttat ttattgacta
     2341 ccagtgtgat tggttcgtta tacaaaatga atgcctctat ttccggtgct gaagtaggtt
     2401 gccaagggga agttggtgtt gcttgttcaa tggcggcagc aggtttaacg gaaattatgg
     2461 gtggcagtgc tgaacaggtg tgtatggctg cagaaattgc aatggagcac aatttaggcc
     2521 taacttgtga ccctgttggc ggacaagtgc aagtgccttg tattgaaaga aatgcaatcg
     2581 cttcagtcaa agcgattaat gccagcagaa tggcactacg ccgtacttct tcgcctcagg
     2641 taagtttaga taaagtcatt gaaacaatgt acgaaaccgg caaagatatg aatgcaaaat
     2701 accgtgaaac ctcaaccggt ggcttagcaa tcaaaatttt accttgtgat taattaatga
     2761 aaaaggctac cttatcaaaa taaggtagcc ttttagtttg tagaacatta atgacggaaa
     2821 tgcctcattc cggttagtac cactgccata ccgtgttcgt tggcggcatc aatcacttct
     2881 tgatcacgca ttgaaccacc tgggtgaatc acacaagtaa tccctacttt tgcagcagcg
     2941 tcaataccat cacggaacgg gaagaacgca tcggaagcca ttacacaacc agcaacttgt
     3001 aagccctcgt cttccgcttt aatacctgca atttttgcgg aataaacacg gctcatctgc
     3061 cctgcaccga taccgatagt ttgcccgtct ttggcataca caatcgcatt cgatttcaca
     3121 tatttcgcca ctttccagca gaacaatagg tcttttagct cagcttcagt tggtttacgc
     3181 tctgaaacca cctttaaatc gtcaatagat acagagcctt ggtcggcatc ttgcactaat
     3241 aatccgccgt ttacccgttt gaaatctaag cgttttacag cttctgagaa ctcgccacat
     3301 tcaagcacac gcacgttttt cttagtggct aacacttctt tggcagaagc agaaacggtt
     3361 ggtgcaataa tcacttcaac aaattgacgg tctgcgatgg tttgagcagt ttcgccgtct
     3421 aattcacggt taaaggcaat aatgccaccg aaagcagaag ttggatcggt ttggtaagca
     3481 cggttgtagg catctaaaat atttttaccc aaagcaacac cacaagggtt agcgtgtttt
     3541 acaatcacac aagcaggctc gctaaattct ttcacgcatt caagagccgc atcggtatct
     3601 gcaatattat tatacgaaag ggctttacct tgtaactgtt tggcggtgga aacagaggct
     3661 tcttttaact cattttcgac atagaatgca gcgttttgat gcgaattttc gccataacgc
     3721 atcgtttgtt tacgcacaaa attgaggttt aaggtgcgag ggaattgtcc acttggttgg
     3781 gttaaatctt cttcctcagc cccttgataa ggcggcactt tttgcccgaa atagttggca
     3841 atcattgaat cgtattgtgc ggtatgctca aacgctttaa tagcaagatt aaaacgggtt
     3901 tctaaagtta aactgttttg atgttgatcc atttcggcaa gaatagcatc aaaatcattg
     3961 ttattgacca caatcgccac atctttatga tttttcgctg cagaacgcac cattgtcgga
     4021 ccaccgatat caatattttc caccgcatct tcaaggctac aatttggatt ggcaacggtt
     4081 tgagcaaaag ggtagaggtt tactaccacc atatcaattc gttcaatgcc gtgttggttc
     4141 atcacttcat catcagtacc acggcgacct agaattccgc cgtgcacttt cgggtgcagg
     4201 gtttttacac gcccgtccat catttcagga aagccggtgt aatctgatac ttctgttact
     4261 agcaaaccgg cttcagccag taattttgcg gttccgcccg tagaaagtaa ttttacccca
     4321 cgagccgata gcccacgagc aaattcgaca atgccttttt tatcagacac acttaataac
     4381 gcctgttgaa tcgccattct taaattcctt aaaatgagtg ttaacgtgaa aataaacggc
     4441 aaagattata acgcaaacgt ttgctttttt catctacaag tggtcgattt tgcaaatttt
     4501 tctgcaaaat cgaccgcttg cactcgtgat taaagcgggt agaatagagg aaaaaaatcg
     4561 gaggaactat gattaaccac aatttagcag atttcgtatt tgagtatttt accgaaaaca
     4621 acctaaaagc aggcacacta cgttatcgct acataaaaga gaacgtgatt gatgcttaca
     4681 gtacccgagt agatgatgcc tttcaaggta aaggtattgc aggagagctt tacaatgctt
     4741 taattgcgtt tgcgcaagaa aaagggctga aaatcaagcc aagttgtagt tatattgagg
     4801 taaaaatgca acgaagtcat cgagatttaa ttgcttagag aggagcaagc ggtcgtaaaa
     4861 tttcaaaaat ttacgaccgc tgtcttattc aattctcaaa aatccgtcac acaaaatata
     4921 agccctattc attaaacaac gccatataaa atttattttc aaacgtatta agcggagccc
     4981 gtttggtttt gctttccagc tcgccagtgg aatagccgtt aataaattgc acaaaagcga
     5041 tgcgttcgcc acgggcattt ttcataaagc cggcaaggtt gtaaacccct ttcagtgagc
     5101 cggttttagc aatcaggttt ttggcaagcg gttcggttga aattgagcct ctgccggaaa
     5161 tagtaccatc tacacctgca atcgggaagg tttcaaacag ttttaagctt tcttcgtttt
     5221 gggcgatata ttcaaggctt tccagcattg ttcggctact cacttgatta tggcgggaaa
     5281 gccctgagcc atcggtcacc acactgtttt taaagtcaat attggctttg gtttttaata
     5341 gtcgacgaat cacataactg cctaattgga atgaggcagg gcggttgtgc tgcttgttgg
     5401 caacggttct aaacagggca tcggcaattt ggttatccga ttttttcatc attttcttca
     5461 gcaacaccgg caacggctcg gaataatgct cggcaaggag cgttccgttt tgggcggtta
     5521 atgactcttt tacttgcccg ttaaacgcaa ttttcaggct ttttaaatga gctttaatga
     5581 tatttgctcc gtaattggtt ggatcttgca ccgaaaaact taagccgaac ggctgagact
     5641 ggcgagccat acagcctttg atttggtaac ggttgttatc gtgaaccact acatcaagct
     5701 ggcaaaatgg ggcttctttc ggctcgacaa tataagcaga gctaaacacc tgcactgggt
     5761 aggcagacgg cacattcact ttagcaaatt cgccaatagg ctggtctgca tttaaagtga
     5821 cataaaaaca gttgtgatct acattaattg ccgctggtgg agcgttaaag cacatcgtca
     5881 agtcgttcca aatccaaccg gaggctttgt cgtggctggc aaaaaccgaa gtgtctaaaa
     5941 ttaaatcccc ttcaatttta ttgatatctt gttgcttcaa tttgctaatt aattgataaa
     6001 tttgaccgct tgtcagctca gggtcgccac taaaacgggc aattaaactg ccttttaaca
     6061 ccccgttttc tacttttccg ttacttaaaa gggcagcttg aaagcggaaa tcatcggtta
     6121 aggttaattt ggctgctaat gccgtaaaga ctttttgggt gctggcaggt agcataaaaa
     6181 tatcactttg atattgagtg atgatttggt tagtgtctaa atttttagca ataaagctaa
     6241 cagaagtgcc ggcaggcaag gtatttaata attcttcggt attaatttca gcctgggtaa
     6301 tactcggaat cagaagtgta gataagataa atttatttaa aaaagcacga gtgaaatttt
     6361 taaaaatcat aataaaaggg gagttgaaat ttttagtgag aaattgaata atagcccttt
     6421 cgttttaatt cgtaaaccga taatttttag taaggaaata gatttaatga aacaaattcc
     6481 tatgacggtg cgtggtgcag agcaactgcg tgaagaattg gattttctaa aaaatgtgcg
     6541 tcgccctcaa attattgatg cgattgcaga agcccgtgaa cacggcgatt taaaagagaa
     6601 cgccgagtat cacgcagccc gtgaacaaca aggtttctgt gaggggcgta ttcaagaaat
     6661 tgaaggcaaa ttaggcaatg ctcaaattat tgacgtcact aaaatggcaa acaacggcaa
     6721 agtgattttt ggggcaacgg tgcagttagt gaatgctgat acagatgaag aagtcactta
     6781 ccgcattgtg ggtgatgatg aagccaatat taaagagggc ttaatttcag ttaattcccc
     6841 gattgctcgt ggtttaatcg gcaaagaggt gaacgattcg gtgagcatta ccacaccggg
     6901 cggtaaggtc gagtttgaca ttgtgggtgt ggaatatatt taatctacgc taggggcgaa
     6961 ttacaatagt ggggcgaaaa atttttcgcc cctactttat taaacaatct cactcggcac
     7021 aaagaagtac gcaatttcac gttttgccga ctcttctgaa tctgagccgt gtactgaatt
     7081 ttcacgcata cttaaggcgt aaagatcacg aattgtgcct ttttcacggt tatccggatt
     7141 ggttgctccc attaatgcac gataatggtt gatcgcattt tccccttcca gtacagaaac
     7201 gacaatagat cctgatgtca taaattccac taacggctca aagaaatctt tgcctttgtg
     7261 ttccgcataa aatccttccg cttgctcacg ggtaagatgt acttttttta gagctttgat
     7321 agtcagcccg ttttcttcca attgagccaa aattttgccg attaaattac ggcgtgtagc
     7381 atccggctta ataatagaaa gcgtttgttg aatcatcatc ttctcctatt taacttgcat
     7441 tcccggctga acaccgctgt ctgcatctaa taagaacagg ttcgcaccgc ctgtgccggc
     7501 agataaaatc attccttccg acataccgaa cgacattttg cgtggagcaa ggttggcaat
     7561 tacaatcaca aaacgcccga taagtgcttc cggatttggg taggccgctt taatgccgga
     7621 gaacacttgg cgttggtgat cacctaaatc cagctcaaaa cgtaacattt tgtctgattt
     7681 tggcactgcc tcgcagttca atactttggc tgcacgcaaa tctaatttag cgaaatcatc
     7741 aatcgtaatt tcagggctga ttggctcaac tgcaatattt tcttgttttt cgactgcttg
     7801 ttgttccact ttttgtgttc ctttggtttg gttttcggtt tttttattcg cttctgcaaa
     7861 taaggctttg gtttcatcaa taactgcatc aatctgtttt ttctcaaggc gtgagaacag
     7921 cgatttaaac ggtgcaacgg tatgcccgaa taatggggta gcgatattat cccaacgcaa
     7981 ttcgctttgt aagaatgctt cagcacgttc tgccagtttt ggtaataccg gttttaggta
     8041 gctcattagc acacggaata actcaatgcc cattgaacaa accgcttgta attcagcctc
     8101 tttgccttct tctttggcga tgacccaagg ggctttgtcg tcaatgtatt tattggcttt
     8161 atcggttaat tccataatgg cacgaatagc tttattaaat tcacggtttt catagaaatt
     8221 cgctatggtt tctgcttgag cggtaaattc attaaataac gcttcgtcat ctaatttttc
     8281 agctaatttg ccctcaaagc gtttagcgat aaaactggcg ttgcgagaag caagattcac
     8341 taatttgttt acgatatcgc tgtttacacg ttgcacgaag tcgtctaaat taaaatctaa
     8401 atcttcaatg cgatcgttta attttgccgc atagtaatag cgtaagcatt ccggatcgag
     8461 atgttttaaa taggtgttgg cttgaatgaa tgtaccacga gatttcgaca ttttcgcccc
     8521 gtccactgtc acataaccgt gagcaaacac attggtcggt ttgcggtagc cgctgccttc
     8581 caacattgcc ggccaaaaca ggctgtggaa gtaaacaatg tctttaccga tgaagtgata
     8641 aagctcggtg gtggaatctt tttgccaaaa ctcatcaaaa tcaatgcctg cacggtcgca
     8701 taaattttta aacgatgcca tataaccaat aggggcatct aaccaaacgt agaagaattt
     8761 gttttctgcg tccggaattt caaaaccgaa ataaggggca tcacggctga tgtcccattg
     8821 ctgtaaacca ctttcaaacc attcttgcat tttattggca atttcaggtt ggagtgagcc
     8881 ggaacgagtc cactctttca acattccctc aaagcttggc aggtcaaaaa agaaatgttc
     8941 tgattctttt accaccggag ttgcaccgga aactgccgag cgagggttga ttaaatccat
     9001 cgggctatag gtagaggcac atacttcaca gttatcgcca tattgatctt cggctttaca
     9061 tttcgggcag gtccctttca caaagcgatc cggcaagaac atattttttt ctgggtcgaa
     9121 cagttgtgaa atcactttgc ttttaataaa accgttcgct tttaaggttt tataaatatc
     9181 ggtagtgatt tggcggttct cttcgctgtg ggtggaatgg taattatcaa agctgatatt
     9241 aaaactggca aaatccgctt cgtgatcggc tttggctttt tcgattaact gttcaggggt
     9301 aatgcctaat ttatcggcat taagcataat aggcgtgccg tgggcatcat cagcacagac
     9361 aaagtggact tcattgccac gcatacgttg aaaacgcacc caaatatctg cttgaatatg
     9421 ttcaagcata tgacctaaat gaattgcacc gttagcatag ggcaaggcac aagtaacaag
     9481 catttttcgt ttttggttag ccattctttt tctcattaaa attagggtaa aaattgccgt
     9541 ctattttagc ccaaaagttg caggtttacc agttggcgtg aatttattag agctttgggc
     9601 taacaagcgg tagaatatga tgcgctagag gcgaaacatt tttcgcctca atttcccaaa
     9661 tgatgatgtg ggcgaaagat gtttcgcctc taaacctatt ttggataaaa atagtatgcg
     9721 acaagtaaag ttataccgct accaactccc cattcaaacc ggtgtagtgt tacgcaagca
     9781 acctttgaaa gaaaggcaag gggtgttggt gtgtttgcaa gaacaggaga aagtcggctg
     9841 gggcgaaatt gcaccgcttc caagttttag ccaagagagc ctagaacaag ctgaaaacca
     9901 agctgtgaat tggttaaagg cgtggcagaa aggagagcct gaaacgttag agcagctttt
     9961 cccgtctgtt gcctttgggc taagctgtgc gttggctgaa ctgaataatg aattaggcga
    10021 gcaagcgaat aaccaatcgg cggtgctgtg ctatggcgat ttggaaaagt tacacacggc
    10081 atttagccaa catacgaacc caatcggtaa aattaaaatc ggtctcaatc ctgaacagga
    10141 aggcgagcag gcaaatttgc tgttgcatac ttttccgaat ttacgcctaa ggcttgatgc
    10201 caaccgtctt tggagcttgg aacaagcggt caaatttgct gaaaaaattg caaatgaaca
    10261 taaaccccgt attcaattta tcgaagaacc ttgccaagcg ctcgaacttt cccgccaatt
    10321 tgccacacaa accgacattg cgattgcgtg ggacgaaacc gtgagagagg cgaatttttt
    10381 ggtaaaaaaa gagccaaatt tgaccgctat tatcattaaa cctacgctgg ttggttcgct
    10441 tgaaaaatgc gtgaatttaa ttcaacaagc acagaagcaa ggattagtag cggtgattag
    10501 ttcaagtctt gagagcagtt tgggcttaac ccaactggct cgtatcgccc aacaatacac
    10561 cccaaacagt gtgccggggt tggatacgtt aaatttaatg caacaccaat tattgcgaga
    10621 ttggcacgac tctagcttgc cgttggtcgg gctagaaagc gaatttgtta gggaagttgt
    10681 ggtataatct cccaattaaa cactctctcc ccttgtggga gagagaccgc ttatgagcgt
    10741 tcagcgaaat aagcagagag aggggaagcg gtcatttttc taaaaaagtt tgcacatttc
    10801 ccctctccct gatttttctt ctggacgaag acgtatttcc cccctctccc tgatttttct
    10861 tctagacgaa gaaaaatctg tccctctccc acgaggggag agggtaaagt aatttatggt
    10921 ataaaaatag tatgcgttta gacaaattta tcgccgaaaa taccggtttg acccgttcac
    10981 aagcggctaa agtgctgaaa agtggtgtgg tgacggtaaa cggcaatatt gaaaaaagtg
    11041 gtgcggcaaa aatcagtcaa gaagatgaaa tttattacga agatcagaaa ttagagtggg
    11101 tggaagaggg gcagtatttt atgctctata agccacaggg ctatatttgt tcacacgatg
    11161 atggtgagta cccaacggtg tttcaattct ttgattatcc gttaatgact aaattgcata
    11221 ccgcagggcg gttagatgtg gataccacag ggctggtgct gttaaccgat gacggcaaat
    11281 ggtcgcaccg tattacctcg cccaagcacc attgtgaaaa gacatactta gtgacgcttg
    11341 ctgatccggt ggaagatttt tatgcacagc gattggcaga aggaatttta ttgcgtggcg
    11401 agaaagagcc aaccttgccg gctcaacttg aaattttaga cgattacaat gtgaatttaa
    11461 ctattagtga ggggcgttat catcaagtta agcgaatgtt tgccgccctt gggaataaag
    11521 tcgaggcatt gcaccgctgg cgaattggcg atgtggtgtt agatgaaagg ttggaagaag
    11581 gtgaattccg ctcgctcact tcagaggaga tagccagttt taatggaaag tagaagacca
    11641 agcctgagct ttttcatcat attaggtatg atggcaatgt tgccaccatt agccattgat
    11701 atgtatttgc cctcattttt agatattgcc cgtgacttgg cggtttcgca agaaaaagtg
    11761 caaaccacct tggcggtatt taccctaggt tttggggcag ggcaactatt ctggggaccg
    11821 atggcagaca gctttgggcg gaaaatcatt attttaatcg gattagtcgg ctcggcgatt
    11881 gccgcttatt ttctgaccca agttcagaat atcgaaacat tttacctgct aaggttagta
    11941 cagggcttat gtgcggcagc cccggcggtg gtgctgggag cattagtgag agatctgttt
    12001 gagcgtaatt tatttgccaa attgatgtcg gttattatga ttatttctat gcttgcccca
    12061 ttgcttgcac cgattgttgg cggttatatt gccaaatatt tccactggca ctcaattttc
    12121 tatgtgttag tggcgatggg gattttgtgc gtggtattaa ttagttggaa aatccctgaa
    12181 acattagccc ccgaaaaacg cctgccgtta agttttggca aaactttaag caattttgcc
    12241 atcttactga aacataagcc tactcttggt tatgtgctga ttggcggctt aacctttgca
    12301 ggtattttct gttttttaac ctcaggctcg attgtctata ttgggcttta tggcgtgtcg
    12361 caagaaaatt tcggctattt cttcgggctg aatatgattg tgatggtgac gatgacggcg
    12421 attaacagca aaatggtagt gaaagtcggc tctgaaacga tgttacgaat tgctttagct
    12481 atgcaactgt tagccggcat ttggctggct ttagtggcga tttttgattt aggcttctgg
    12541 gcaatggcaa tcggtattcc gctttatatc ggaatgcttt ccaccattgg tagtaatgcc
    12601 agtgccgcca ttttagagca atttccacaa atggcaggca cggctaacgg agtagcaggt
    12661 acggctcgtt ttggtgttgc ttcccttgtt ggagcagggc tttcacatat tgctgtaacc
    12721 agtgctgccc caatgctttt ggcgatggca ttgtgcgtta tgttagccgg tgtggtgtat
    12781 tattttctgt gttataagcg ataactaggt tggggttagc ttgcgaaaac ccaacaaatt
    12841 tctacaagcg gttaataata gtacattttt tgcaaatttt taggcagaat taaccgcttg
    12901 tgtggtacga gcgtggacgc tcgcaccatc ggggcaatat ctactaagat tttaaaaaca
    12961 gcgaaataga ttccaaatgc ccggtgtggg ggaacatatc aatcattgcc gctttttcta
    13021 gcctgtagcc tagttgcaac agtttttcgg catctcgcac cagtgttgcc ggattgcaag
    13081 agacataaac aatccgctca ggattgagtg atgtcaagtg atctaggcaa aatagtgctc
    13141 cgttgcgtgc cgggtcgagt agtaccttgt taaacggctc ttttgcccaa ggtttgtcag
    13201 aaaacggctc atctaaattg gtttggtaaa attccacatt ttttagaccg cttgtcaccg
    13261 cattctctcg ggcttgttgc accattggtt ctaccccttc cacaccgacc accgatttcg
    13321 ctcgctcagc aataggcaag gtaaaattcc ccattccaca gaagagatct aacactcgat
    13381 cttggttgga taattccagc cactcaaggg ctttttccac cattttttca ttgagcgtgg
    13441 cattcacctg aataaaatcc cgaattgaaa aatgcaactt tagaccctga atttgataat
    13501 acgggcgttc accgcacaga tgctcaatgt gattttcgct agtcatcaca aaaagagata
    13561 attgctcttg tgtggcgaat tgacgcaaat tgtggttatc ttgcgccgat aatgccccta
    13621 aatggcggaa aaatagggaa atggtattgt ccgcactgac cagctcaata tgccccaatt
    13681 ttttcggctg ttgccagttt tcaatcaggt gttttaattt tgggagcaaa ttggcaagcg
    13741 gttcaactag cacttcacag tgtgcaagcg gtataatttg gttggaattt tgcaaacgaa
    13801 agccgattac cgccttgcct tgctggatcg caatgcttaa ttttgcccga cggcggtagt
    13861 gtttatcgtt gccgataatc atcggctgaa catcaatagc gtgggtttgc aatttctgta
    13921 agcgttggaa taaagcctgt tgttttgcct tacgttgcag ttcaagcgaa atatgctgca
    13981 tttggcagcc accgcattgc ccgtaaagtt cgcagcttgg cattcgccga tttgcagatt
    14041 ttttaagaat tttaaccgct tgtccacgtc cgtattggcg tttctcttcc aacactttaa
    14101 attccacctg ctcatcaggc agggcatttt cgataaacca agttttgccg ttgattttgg
    14161 caatccctaa gccttgataa tctaacgatt gaatagttgc cttttgacaa gcgggtgatt
    14221 ttatcggttt ttttgccgat ttttcagaat aaaaaatcgc cattgttttc agatgaattg
    14281 ttatgatata aagtgtcgaa atggggagat tatataagaa aagcagttgg cggaaaatgg
    14341 aggcaatatg atttcatcgg tttggaatga acgttatttg gcggataaaa aacgggaaca
    14401 agatcaccgc tcgccttttc agcgggatcg ggcaaggtta ttgcattcgg aggcttttcg
    14461 ctgtttgcag gcgaaaacgc aaattcacgc cgtgggggaa gatgattttt atcgaacccg
    14521 tttaacccat tcgttggaag tggctcaaat cggtagcagt ttgcgagaaa aattattagc
    14581 ggatgtggaa ggctttcaag cggtctgttc ggagcaggaa tttgcaaaaa atatggcaaa
    14641 tctgaccgct ttattgccgg atcatagctt ggtggaatcc ctttgttttg cccacgatct
    14701 cgggcaccct ccgttcgggc acggtggtga aatggcgtta aattataaaa tgtacgcctt
    14761 tggcggcttc gagggtaatg ctcaatcctt tcggattatg acccagcttg agccttacac
    14821 cgaaacagcc ggaatgaatc tgacccgtcg caccttactg ggggtaatga aatatccggc
    14881 actcttgtct caaacctcgc cgattgagcc ggcagaaatg agcgaggctc ggcatattaa
    14941 tttgcaccat tttccacaga gcaaagggat ttttgatgac gacaaccact tttttgagtg
    15001 ggtattagcc ccgttaagtg aaaaagaccg acgccaattt tgcacggttc agcccaatca
    15061 agatccgaaa cagccaaaca aaacgcaata taaatctctc gattgcagca taatggaact
    15121 agcggacgat attgcctatg gcgtacacga tttggaagat gcgattgtag gtggaatggt
    15181 cacaccgcaa tcgtggcaaa atgcggaaaa attgctggcg gagtgccaat ccgattgggt
    15241 gaaacaacgc ctgccggaga ttcgggaaaa gctcttttct cagcaccgct acgagcgaaa
    15301 agatgtgatc ggggcattag tgaatcattt tattaccaat gtgcgttgga aagctctgcc
    15361 tgaatttgac gagccgttgc tacgttataa tgcctattta ccggaaagtg ttgcctgtgt
    15421 gctgaaaatc ttgaaagatt ttgtgtatca atatgtgatt tgtgatgcca aaacccagcg
    15481 ggtggaacgc aaggggcaac gcattctaat ggaattgttc gatattttaa gcagtgatcc
    15541 gatgcgatta ctccctaata atgtgcggga acgttggaaa aatgcggaag aatctaagcg
    15601 tgcaagggta atttgcgact atttagccgg tatgtctgat gggcaggcgt ttaaactttt
    15661 tgaaagttta taatgaactt tgttaatttt gcaaggtctc agtaataggt ttcatttatt
    15721 taataggaga tttcaatgaa aactgtttct aaaggtcttt tagtattagc aactttggct
    15781 tctgcaacag catttgcggt ttcttccaag tgaaatttat cagcctcgtg gcgaattagt
    15841 taaagcagat cgtcaaggta atggtgagtt tgaagtagaa tatcgtgtca gtggtaatga
    15901 tgttcgtggc ttagcgaaaa gtgcgatcgc ccacgctaaa cgtaaaggtt tccatttagt
    15961 agaatctgat attcatagag atgatgctga tttaaaattc aaacgtggtg accaagagct
    16021 ggatattgaa attgaagtaa aaggtagaaa tcggattgaa tataaggcag atctagattt
    16081 agataaaaac taaatttacc ccttaaaacg accgcttgtg tgatttaacc gcacaagcgg
    16141 tctttttatt gtgctttttt gcaaaaatac tcaagccgac cggtcccgga atttggtaaa
    16201 atagccgttt aaatgacaat aatgatgctt ttacttatta cttagaggaa aaaatgtttt
    16261 tagtcggtca gcgttggcta agtgaatcgg aaaataattt aggtttggga atcgtgactt
    16321 cggtggatca tcgcactgtc actatcaatt tcccggcagc ggaagaagag cgggtctatg
    16381 caattgcagt tgcaccttta actcgagtgc agtttcaagc cggagataga attaacagta
    16441 tagatggctg gcagttagag gtttcagagg ttgtggaaaa tcaaggtgcc gtaatctatt
    16501 tgggcaaaag ggtggataac ggtgaagaag cggtactgcc tgaaatgttg ctcgatcata
    16561 aaatcagttt cagcaaaccg caagaccgcc ttttttcggc tcagattgat cgctcagatc
    16621 gctttgcatt acgctttaac gctttgcagc accagcaagc gcaatatcag tcgccactgc
    16681 gtggtttgcg aggcattcga gccagcctga ttccacatca attacatatt gcaaaagaag
    16741 tcgggcaacg ccttgctcct cgtgtgctat tagccgatga agtgggactg ggtaaaacta
    16801 ttgaagccgg tatgattttg caacaacagc tattttcggg cagagcagaa cgagtattgg
    16861 tattagtgcc ggaaagtttg caacaccaat ggttggtgga aatgcttcgc cgttttaatc
    16921 tgaaattctc gttattcgat gaagaacgtt gtagtgattt tgataaacaa gatgaaaatg
    16981 gcgatgatgt aagtgaaaat ccatttgaga gcgaagcgtt agtcattact tcactaaact
    17041 ggctggaaac ctcaccgcaa cgagccaatc aagtgcttgc tgccgactgg gatctattaa
    17101 ttgttgatga agctcaccat ttagaatggt cggaaaccga atcttctatc ggctatcagt
    17161 tggtagagcg tttatctcaa caaattcctg ccgtcttgct tttaacggca acaccggagc
    17221 aattagggca agagagccat tttgcccgct tggcgttgtt agattcggat cgtttttatg
    17281 attatgccga gtttgtacag gagcaagcac agtataaacc ggtggcagat gcggtgagta
    17341 gcttattaag cgataaaccg ctaagtaatg acgagcagaa tgcgattgcg gagctgttaa
    17401 gcgagcaaga taccgagccg atgttccgtg caattaatag caaaaaatcg gacgaaaatg
    17461 accgcttgca agcccgtcaa gagctgatta gtgagctaat tgaccgccat ggaaccagcc
    17521 gggtgttgtt tagaaatacc cgtcagggag tgaaaggctt cccacatcgg gaataccacc
    17581 aaatcagcct agaaatgccg aaacaatacc aaaatgcgtt aaaagtgatg ggaatgatgg
    17641 ggagtgtgag ccaaagtgat ttgctctatc ctgaatattt gttccaacga atgaacccga
    17701 atgcgaaatg ggctgaattc gaccctcgga ttgattggct catcactttc ttaaaaaatc
    17761 atcgtgatga aaaagtgctg gtgatctgca aacaggcgga cactgcgatt gctttggagc
    17821 aagttttgcg tgagcgtgag gcgattcgtt ctgccgtttt ccacgagaaa atgtcgattg
    17881 ttgaacgtga caaagctgcc gcctattttg ctcaacaaga agaaggcgct caggtgctga
    17941 ttagttcaag catcggttca gaagggcgaa atttccaatt tgctaaagat ttagtgctgt
    18001 ttaatttgcc ggataacccg gatttattgg agcaaagtat tgggcgatta gatcgtatcg
    18061 gacagaaaaa tgacattcag atttatgtgc cttgctttaa tttatcggct caacagatgt
    18121 tggcagagtg gtatcacaag ggcttgaatg cgtttgaaga aacctgcccg atgggaacag
    18181 cgatcttccg tgaattaggt gaagaattgc aacaattcct gcaaaaatct gaactttcag
    18241 cccaatttga tgattttgtt gcgaaaacct ataaacgcca acagtatttg aaagccgaac
    18301 tggagaaagg acaggacaga ttattagaac tgaattctaa tggcggagaa gcagctcaac
    18361 agctcgctaa tgatattgcg aaagaagata ataatccgca gttggttaat tttgccttga
    18421 gtttgtttga tgtgattggc gttgaacagg aagatttagg cgagcagagc attgtgatta
    18481 gcccaaccgg acatatgctt gtgcctgatt tcccggggct atcggaagat ggcacgacca
    18541 ttacctttaa tcgtgaactg gcgttaatgc gggaagaggt ggaatttctc acttgggatc
    18601 acccgatgat ccgcaatggt attgatttaa tcacctccgg cgatattggc aaatcagcaa
    18661 tctcattgct ggtgaataat aaattgcctg ccggtacatt attacttgag gcgctttatg
    18721 tggtggaagc acaagcaccg aaagggctaa atttaacccg tttcctaccg ccaaccccga
    18781 ttcgggtttt agtggataac aaaggcaaca atattgctcc gcaggtctct tttgccgggc
    18841 ttgaacgcca attaaaaccg gtgaataaac agatggcaaa taaaattgcc aaaatggctc
    18901 gagcggatat tgaaaaatta attaaagcga gtgaaaaagc ggtagaacct caggtccaac
    18961 aggtgattga aactgccaaa tttgaggcaa atagcaaatt aaaagcagaa ttacaccgct
    19021 tggaatcact caaaatggtg aataaaaata ttcgagccga tgaagttgaa gccttagaac
    19081 aacagcttaa cgcttccctt gcccaacttg aaacggcaaa ttatcgctta gatagcttgc
    19141 gagtgattgt aagtaataaa gcgtaatttt ttgcaagtac gaaaagtgat tttttcgatc
    19201 tatgtcgaaa aaatcacttt tctattttgt gtcatccttg cagattattt atgctattcc
    19261 tcatattgta aaaggtataa aaaaggaata ttatgtatat agatttgcaa tatgctgtgc
    19321 cgttattgtt tgaatacgac ccgaacaaaa gccaaattaa tttagccaaa tatggtattg
    19381 attttgaaca ggcaaagttg ctttgggaag atgaacgaaa agttgtactg gaggcttgca
    19441 ttgaacccga attacgctat ttcctgattg gcaagattta tgataaatat tggacagcgt
    19501 tttttacacc aagaaatgat gttattcgtt taatttcagt tagacgttcc cgtaaaaaag
    19561 agatctcata ctatgagaaa taccattagt gccgaagaat tagaacgtat cttcgatgaa
    19621 ggcaaagaag atattttaca atactgcgat ctttctaccg ctcatcgccc ggggcaaatg
    19681 aaaagggtga atgttgattt cccaaattgg atggtagaag cgttagataa gcaagccaga
    19741 catttaggtg tgcctcgcca agccttgagt aaaatgtgga ttgcggaaaa attaccggtt
    19801 caatcaccta ggtaagcgag tggcaaatgg cattaattga atataaccct ccattagaac
    19861 catttttaga tgaggtttat cgggataacc atattttagt aattaataag cctagtggtt
    19921 tattatcggt gccgggcaat cgtcccgaat attacgacag tgcaatgact cgagtacagc
    19981 aaaaatatgg ctttaccgaa ccggctcatc gtttggatat ggcaacaagc ggtattcttt
    20041 tgttcgccct aagcaaagcg gcggaaaaag aactaaaacg ccaatttcgg gaacgtgaac
    20101 cgaaaaaaca ctatattgcg ttactttggg gcaaattagg tgaaaaagtt ggggataagg
    20161 gcgaaatgaa ttttccgctg atttgcgatt gggaaaatcg cccccgccag aaaatttgct
    20221 atgaacgagg caaaaaagcc attacccatt atgaagtgtt agctcattat ccgaataata
    20281 tagcgagagt aaaactcacg cctatcacgg ggcgttcgca tcagctacga gtacatagcc
    20341 ttgcgttagg tcacccgatt attggcgata agttttatgc taatccgctg gcaaaaagtt
    20401 tatcgccccg tttatgtttg cacgcggagt cactaacaat tactcacccg attacaaggg
    20461 agttgatgac gtttactgct gagccgactt tttagcctcg ttcagtaggt gtttgtaata
    20521 tgcccaatca aaatattgcc ccgggtcgat tttccgttcc ggggcaatat ggcaatgccc
    20581 ggtgatgcgt tcatcggtaa tttgtggata gctttgctga atggctttgg tcaaatttgc
    20641 caaagattgg tattgagctt gagtaaacgg ctgattatta ctgccttcca gttcaatgcc
    20701 aatcgaatat tcattgcatt tctcccgccc ttcaaaacaa gagacgccgg cgtgccacgc
    20761 catatcgtta aaattcacat attgcgtgat ttccccctcc ctattaatca aacaatgggc
    20821 ggaaacccgt agatctttga tttcttcaaa ataagggtga gcggttggtt cgagtttacc
    20881 ttggaaaaac agatcgataa aatttccacc aaattcttcc ggcggtaagc tgatgtagtg
    20941 aataaccaac aaggaaatat cctcttgatc aggacgttgg ctaaaatgcg gagacggcac
    21001 ttgtttttga ccggttaaac agccctgttc gatttttaaa tttggcatag tctaaatagg
    21061 gtgaatacgt taaaatatgg ctcattttac tagaaaaaga gaagaatatg ttaagttatc
    21121 gccacagttt ccacgcaggc aaccacgctg atgtgctaaa acacattgtc cagcttttga
    21181 tcttgcgagc attaaaagaa aaagaaaaag gttttttata tcttgatact cactccggtg
    21241 tggggcgtta tagtctgtta agttttgaat cggaaaaaac aggcgaatat ttagagggtg
    21301 ttgcccgttt atgggagcgt gatgatttac cggaagaagt ggcattctat attgatgagc
    21361 tgaaaaaatt aaaccgtggc ggcaagttaa agtattacgc aggctcccca ttattggcgg
    21421 tacagcaact gcgtgagcaa gaccgagcca ttcttaccga acttcacccc aatgattttc
    21481 cgctgttacg acaagaattt gccaaagcga aaaatgtgca aaccaagcga gaaaatggct
    21541 ttcaacaatt aaaatccgcc cagccgccta aagagcgtcg aggttttgtg ttgattgatc
    21601 caccttatga attaaaagaa gattatgaat tggtggttaa agcgatagaa gagggctaca
    21661 aacggtttgc cactggtgtg tatgccattt ggtatccggt ggtgcttcgc caacatacca
    21721 aacgtatagt gcgaggttta atggataccg gcattcgcaa aattctacaa attgagcttg
    21781 ccgttcgtcc tgatagcgac caacgtggaa tgacggcaag tggtatgatt gtgatcaacc
    21841 caccgtggca gcttgaaacc cagatgaaaa aaatcctgcc atatttaacc gaggtgcttg
    21901 tgccggaagg aacaggttct tggaaggtgg agtggattac gcctgagtaa attaaatacg
    21961 gatagcacaa gcgtggacgc ttgcgccatc ataaattctg atttgcaata ttttttagaa
    22021 aaataaccgc ttgtcttatc aagaagtggg ggaaatataa aaggaaaaaa cgatgcaaca
    22081 atacaaacac gactttattg aatttgcctt aagtcgcaat gtgctgaaat ttggcgaatt
    22141 taccttaaaa tcaggcagaa tcagccccta ttttttcaat gctgggcttt ttaacaccgg
    22201 gcgcgattta gccaaattag gcgaatatta cgccaaagcc attcaagcca gcggcattga
    22261 gtatgatgtg ttattcgggc cggcttataa aggcattccg attgcaacca cggttgccgt
    22321 ggcactagcc aacctgttcg atgtggataa accttgttgc tttaaccgca aagaggcaaa
    22381 agatcacggt gaaggcggta atttaatcgg ttctccctta acgggcaaga ttttgctggt
    22441 ggacgatgtg attaccgcag gcacggcaat tcgtgagtcg atggaaatta tcaatgccaa
    22501 taatgcccag cttgccggtg tgctgattgc gttaaaccgt aaagagaaag gcaagggcga
    22561 gttgtctgcg attcaagaag tcgaacgtga ttacgattgc caagttttct cgattgtgga
    22621 ttttgatgat ttggtagcat ttattgaaac gtcgccacaa tacgctcctt atttgccgaa
    22681 aatgcgtgaa tatcgtgaaa aatacggtgt ttaacttttg caaaaaaaca gcaaaaactc
    22741 accgcttgtc actctctaat ctcaccatta tgaatcactt tcatcttttg gtgagatttt
    22801 ttcaattaaa aagccgataa attgattgtg agctttagct aattggctta ggataaactc
    22861 ctgtaataca ggagttggag aactaaaatg gcacatcaaa aattaccttt tcacgcagac
    22921 accgttggct catatttgcg ttccgatgct tggaaaaaag ctcacgcaga ctataaagca
    22981 ggcaacattt ccctcgaaca acgtgatgaa attgtagaag cggaagtgaa aaaattagta
    23041 caagctcaat tagatgcggg cattcaagtt gttacagacg gcgaatatca ccgctcttgg
    23101 tggcatattg atttcttgga aaatctgaac ggcattgaag gctatgtgcc ggaaaaagcc
    23161 tatgcgttta aaggggtttt ataatacacg ttgttgcggt aaagtgtctt ggaatccgaa
    23221 tcaccctttt attgagcatt tcaaaaaatt caatgcgatt gtaggtggtc gtgcggtggt
    23281 gaaatttacc attccaagtc caaaccaatt aatgtacccg attcagtggg atcacggcat
    23341 ttacccaaac cgtgaggaat ttgccaaaga tgtgcaacag gcttataaag aggcgattaa
    23401 agcgttctat gatgccggct gtcgttattt gcaaattgat gatgtctatt gggggtcgtt
    23461 gtgtaataac gttggtcaac cgacatttga agccgataaa gctcaagcgg tggcgaatat
    23521 tcaagccatt cttgccgata agccggaaga tttaaccatt accacccacg tttgccgagg
    23581 caactataaa tcttcttatt tattgacagg ggcttatgat ccgattgcag acggcttatt
    23641 tgctcaaacc aactatgacg gctatttctt agaatatgat gatgagcatt caggcggttt
    23701 tgagccgtta aaacattttg ccaacaacaa agggcgtgtg gtgttgggct taattagctc
    23761 aaaattccct gaattggaag ataaagaagc ggttaaagcc cgtattcaag aggcggcaaa
    23821 atatgtgccg ttagagcagc tttgtctcag tccgcaatgt ggttttgcct caaccgaaga
    23881 gggcaatata atgtcagaag cacaacagtg ggcgaaagtc cgctttgtgg aagaaattgc
    23941 caaagaagtt tggggcgaag attaatgtga gaaaatgccc gcaacaagcg ggcatttttt
    24001 gttaattttt tgcaattcaa gccatttagc gaatacggtt aaaaccttgt tctaaatcgg
    24061 caattaaatc ttccaccgct tccaagccaa cgtgaatgcg aattaatgta cccgttagtt
    24121 ttcgctcaat agacggacgg attttggcaa tttcttccgg ctggttggca agaatcagcg
    24181 attcaaaccc accccaagaa tacgccattg aaaacagttc aaaatgctct aggaagttgg
    24241 ctaatttgtc attcgagagc ttttcgcaaa gttcaaatga aaatagaccg cttgaaccta
    24301 aaaaatcccg cttaaaaaat tcgtgccccg ggcagctttc caacgccggg tgataaactg
    24361 ctttcacttc agggcgttga gccagccagt tagctaccgc aatgctactt tgttcgtgct
    24421 gttttaagcg aatgcctaag gtgcgtagcc cccgagcggt gatgtaagcg gaatcagcat
    24481 ccaccatttg ccccattaaa taagagcctt cacgcagttt atcccaacaa cgagcattgg
    24541 aaacggctgt gccgatcatc acatcagaat gcccgactaa atatttagtg ccggcttgaa
    24601 tggaaatatc aatgccatat tctaaagcag ggaacagcac accggcagac caagtgttgt
    24661 cgatcataat cacgatttct gggttgattt cacgagcaac acgcacgaga gtcggaatat
    24721 caggcacttc cattgttagc gagctcggcg attctaaaaa aagcactttg gtgttcggtt
    24781 gcacaagggc tttcaagcct tcaccaatca tcgggtcata ataagtagtt gaaaccccca
    24841 tacgttttaa cagcacatta cagaattctt gtgtcggttc gtaagctgcg cctgtcatta
    24901 aaatgtggtc accttgttcc acaaaagcta aaatcgcatt ggtgactgcc gccgcaccgc
    24961 aagggtaaag gtagcaacct gctccacctt ctaattcaca catcgcttct tgtaatgaaa
    25021 aatgagtgag agtgccacgt ctgccataaa ataatgctcc tttgtagcgg ttttgtgtag
    25081 cgtgtttttt ctcttctaag gtttcaaaca ctaaagatga agcacgctga atcaccgggt
    25141 taactgctcc ttgtgtgtta cgttttttac gccctgtatg aacaagtttg gtggaaagat
    25201 ttttatagtt agacataact tttcctaaag taaaatgcat aggggcaaat caacatttgc
    25261 ccctttatta ataattaacg aaacataaag ttatttcttt gacggctacg tttaaattgg
    25321 ctgattagca caatgaccgc aacaattaag taaaccgcaa aagtaaagat tagccattgt
    25381 gccattgaaa agccgaacat ttcccattgg ctttggctac aattaaccgg accgggggca
    25441 aacacttgtg gtagccattg gtcaagcggc aaggtttgcg ggaaattaac tttaaattcg
    25501 cattgattcc atggtgatgg attgacctga taatcgtggt gtttgattga aagtattagc
    25561 cctttaaatg cgctaccaag ccaaattaga attgccaagt agcgaataat cgcatatcta
    25621 ttaccaagaa atcctaaaat accggcaaat aaaataccaa ataaagcaac tcgctcataa
    25681 atacacatta cacaaggtac taatcccatc ccatgttgga aataaagcgc tgtgccttca
    25741 agtataagac agcttaacat tagtaaaaac catgcactgc gagattgtga tagattttta
    25801 aaaaaataga gcatagttat tcctcatttt gtgaacttaa ggcattctac cttatttggt
    25861 atgagttatc tataaactaa cgtgtaataa accatcccca atttatcatt acttcagtca
    25921 tagaaggtag taagaattct aaccctaaga aaccgacaat agatagaaca atggtataag
    25981 gtaatgccat atagaccatt ctgccgtaag acagtttaat taacggcgca aaggaggacg
    26041 ttaataagaa taagaaagca gcttgtccgt ttggggtagc aacagaagga agatttgtgc
    26101 cagtattaat tgcaactgca atcaggtcga actgctcacg atctataatg ccggcatcta
    26161 gtgcggtttt agcttcatta atgtaaacag taccgacgaa gacgttatct gaaatcatcg
    26221 agagcaaacc attgaaaata tagaataatg aaagctgtga atgtggttcg gcagataaca
    26281 caaaggcaat gatcggctca aataatttta aatcaataat cacggcaaca accgagaaaa
    26341 acacaataag caatgcagta aaaggcatag attcttggaa tgctttccct aaagtgtgtt
    26401 catcagtaat gccacaaaat gcagtgcaaa taatgatgat ggttaagcca ataatcccta
    26461 catcggcaag atgtagcgct aagccaataa ttagccaaat tccagcaatg gcttgcacca
    26521 gcatctttaa gcgatcttgt ttcgtcattt tttgttcttt tagttggcta tagcgagcga
    26581 gtacgaccca aactttgcta ggaagcctgt ctccataacc aaataattta tatttttcta
    26641 caagaaagca ggtcgcaatc ccacaaatta acacgggtaa gctaactggt aatactctaa
    26701 gtaagaattc gataaatccc cattccgctt gggaggcaat aattaagttt tgtggttctc
    26761 ccaccatggt cattacgcca cctaaagctg agccaatacc ggcgtgcatc aataaacttc
    26821 ttaaaaaacc acgaaattgc tctaaaattt ctttattaga gatgattttt tcatcattgg
    26881 taatatcagt agaatcttca aagttattac ctgatgcgac tttatgatat acgccgtaga
    26941 aacctgttcc aacgctaatg attacagcaa taaccgttaa agcatcaaga aaggcggata
    27001 aaaaagcagc gcttaagcag aaagaaaggg aaagaatttt tttcgaatga atggcgacaa
    27061 gcagtttggt gaaaatataa agcaataatt gcttcataaa gtaaataccg gcaaccataa
    27121 acattaaaag aagaataaca tcaaagtttg ccataatttc ttctttaatg tggtgaggat
    27181 ttgtcatacc gattacaact gcttcaatcg ctaataaacc acctggctgt aatggataac
    27241 attttaatgc catagagaga gtaaaaataa attcagcgac tagaaaccag cctgcaacaa
    27301 aaggattgat aaagaaataa atgagaggat tgataattaa aaatgccaaa atgcacaatt
    27361 tataccactc ggggcttttt cctaagaaac ttttgaacag agcatcaatg ctactcatat
    27421 aaaggacctc aaaatttgta aacagatatt acaattgtaa tatagttt
//
LOCUS       DANLUT010000012        24675 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLUT010000012 DANLUT010000000
VERSION     DANLUT010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24675
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            154..747
                     /gene="hisH"
                     /locus_tag="PXB38_000472"
     CDS             154..747
                     /gene="hisH"
                     /locus_tag="PXB38_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL5352834.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTEFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
     gene            846..1691
                     /locus_tag="PXB38_000473"
     CDS             846..1691
                     /locus_tag="PXB38_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL5352835.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQAGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            1861..2610
                     /gene="hisA"
                     /locus_tag="PXB38_000474"
     CDS             1861..2610
                     /gene="hisA"
                     /locus_tag="PXB38_000474"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL5352836.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKERETVKGWFKKYGAEKFVLALDVNIDAIGQKIIAISGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPDIQFQSSGGIGSLADIAAL
                     KGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            2592..3365
                     /gene="hisF"
                     /locus_tag="PXB38_000475"
     CDS             2592..3365
                     /gene="hisF"
                     /locus_tag="PXB38_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL5352837.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDGRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            3362..3748
                     /locus_tag="PXB38_000476"
     CDS             3362..3748
                     /locus_tag="PXB38_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5352838.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEIAFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISRYV"
     gene            3775..4413
                     /locus_tag="PXB38_000477"
     CDS             3775..4413
                     /locus_tag="PXB38_000477"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL5352839.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(4487..5380)
                     /gene="hslO"
                     /locus_tag="PXB38_000478"
     CDS             complement(4487..5380)
                     /gene="hslO"
                     /locus_tag="PXB38_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL5352840.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDGPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(5625..6041)
                     /gene="hslR"
                     /locus_tag="PXB38_000479"
     CDS             complement(5625..6041)
                     /gene="hslR"
                     /locus_tag="PXB38_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL5352841.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MVFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            6129..6671
                     /gene="nudE"
                     /locus_tag="PXB38_000480"
     CDS             6129..6671
                     /gene="nudE"
                     /locus_tag="PXB38_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL5352842.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            6685..7503
                     /gene="cysQ"
                     /locus_tag="PXB38_000481"
     CDS             6685..7503
                     /gene="cysQ"
                     /locus_tag="PXB38_000481"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL5352843.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            7578..9065
                     /locus_tag="PXB38_000482"
     CDS             7578..9065
                     /locus_tag="PXB38_000482"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL5352844.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCEIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LGYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            9115..9813
                     /gene="pgl"
                     /locus_tag="PXB38_000483"
     CDS             9115..9813
                     /gene="pgl"
                     /locus_tag="PXB38_000483"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL5352845.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     HPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            9989..10876
                     /locus_tag="PXB38_000484"
                     /pseudo
     CDS             9989..10876
                     /locus_tag="PXB38_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
     gene            10886..11575
                     /locus_tag="PXB38_000485"
     CDS             10886..11575
                     /locus_tag="PXB38_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5352846.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            11658..13112
                     /gene="gnd"
                     /locus_tag="PXB38_000486"
     CDS             11658..13112
                     /gene="gnd"
                     /locus_tag="PXB38_000486"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL5352847.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            13247..13840
                     /locus_tag="PXB38_000487"
     CDS             13247..13840
                     /locus_tag="PXB38_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5352848.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(13911..16775)
                     /locus_tag="PXB38_000488"
     CDS             complement(13911..16775)
                     /locus_tag="PXB38_000488"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL5352849.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQSLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(16892..17590)
                     /locus_tag="PXB38_000489"
     CDS             complement(16892..17590)
                     /locus_tag="PXB38_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352850.1"
                     /translation="MKQNRKKSKKVIGTHKKENGLKQFIKNNKIPIILISAIWSIFTT
                     DILERIANMPIIWKNFEENYLYNKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMV
                     NKDDNSILGEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELS
                     TFKIKEINSNLGTLTLTTQEDKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLW
                     EKRRKMQEEQKIPN"
     gene            complement(17835..18428)
                     /locus_tag="PXB38_000490"
     CDS             complement(17835..18428)
                     /locus_tag="PXB38_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352851.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(18418..18588)
                     /locus_tag="PXB38_000491"
     CDS             complement(18418..18588)
                     /locus_tag="PXB38_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352852.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(18590..19336)
                     /locus_tag="PXB38_000492"
     CDS             complement(18590..19336)
                     /locus_tag="PXB38_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5352853.1"
                     /translation="MNKLAKIEQLKTALSQRRPLSESEVQRLREEFIIESSYNSNAIE
                     GNTITLRETVLILKEGMTIAEKPIWEHLDIIGFKDAFNYIYELVANKEPLSERAIKDI
                     HSLVLMGNAESRGVYRKIPVRILGAENEPPPPYLIAEEMQLLIEKYQQKLAALHPIEA
                     ISWLHLAFESIHPFIDGNGRTGRLLINFELLKQGYLPIDIKFTNRAQYYQCFDDFHKN
                     QQDISSLVELISQYELAELERYLAILKQRT"
     gene            complement(19333..19776)
                     /locus_tag="PXB38_000493"
     CDS             complement(19333..19776)
                     /locus_tag="PXB38_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5352854.1"
                     /translation="MLKNLSWHAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFAKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(19770..20207)
                     /locus_tag="PXB38_000494"
     CDS             complement(19770..20207)
                     /locus_tag="PXB38_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL5352855.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLSKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            20446..20889
                     /gene="lysM"
                     /locus_tag="PXB38_000495"
     CDS             20446..20889
                     /gene="lysM"
                     /locus_tag="PXB38_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5352856.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(20943..21794)
                     /locus_tag="PXB38_000496"
     CDS             complement(20943..21794)
                     /locus_tag="PXB38_000496"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL5352857.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            21881..22438
                     /locus_tag="PXB38_000497"
     CDS             21881..22438
                     /locus_tag="PXB38_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352858.1"
                     /translation="MDMKGIMKSILGFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAI
                     AYGATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYY
                     SGVIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQI
                     LHLCVKTIAEDENKSQSKGKTKKHK"
     gene            22647..22741
                     /locus_tag="PXB38_000498"
     tRNA            22647..22741
                     /locus_tag="PXB38_000498"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22682..22684,aa:Ser,seq:gct)
     gene            22755..22831
                     /locus_tag="PXB38_000499"
     tRNA            22755..22831
                     /locus_tag="PXB38_000499"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22789..22791,aa:Arg,seq:acg)
     gene            22903..22979
                     /locus_tag="PXB38_000500"
     tRNA            22903..22979
                     /locus_tag="PXB38_000500"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22937..22939,aa:Arg,seq:acg)
     gene            23109..24602
                     /gene="mltF"
                     /locus_tag="PXB38_000501"
     CDS             23109..24602
                     /gene="mltF"
                     /locus_tag="PXB38_000501"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL5352859.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT         7147 a         4922 c         5432 g         7174 t
ORIGIN      
        1 agatttacta aataataatt ttaaatctga ttttttcttt aatagtttat ttttggcaat
       61 tatcaaaaga ttcgataaga aagcttttga aggaaacaga tatattgagt caattttact
      121 tcactataag aaatacttaa ctcaggaaac taaatgacca acctcaccat catcgacaca
      181 ggctgtgcca acctgtcttc ggtcaaattt gcttttgacc gtcttggcat tcgggctgag
      241 atctcgcgag atctcaacaa aatccaatct gccgataaat tgctactccc cggtgtggga
      301 acagcagcgg cggcgatggc gatcttgcac gatcgccgac ttatcgacac cattcgcaac
      361 gccacccagc cgatgcttgg catctgctta ggaatgcagt taatgacgga attttcccac
      421 gaaggcgatg tggcaacact gaacttaatg agtggcaaaa ccgaacgctt gcctgaatgc
      481 ggtttgccgt tgccgcatat gggctggaac aaggtgcaat accaagccga ccatccgcta
      541 tttcacgaca ttgagcaagg caatcatttc tattttgtgc atagctacgg tgtgctaccg
      601 aatgagaaca ccatcgccac ctgcgactac ggcgtgccgt tttccgctgc cattgccagc
      661 caaaacttct acggcgtaca gttccacccc gagcgttcgg gcgaggctgg ggcgaagttg
      721 ctcaggaatt ttgtggagaa tgtctgattt tgtgatctcg atcgaaaagt ttgaaaatag
      781 ggcttgattt ctcgctttat ttcgacaaaa ttactgttaa tttaaccagt gaaagaaggt
      841 gagaaatgaa cgaaattaaa ctatttgaaa acagccaaat ccgctcggtg tgggatagcg
      901 aaaaagaaga gtggtttttc tcggtggtgg acattatcga ggtgctgacg caaagtagca
      961 atccacgccg ttattggagt gatttaaagc ggaaaatcaa ggacgaagag ggcggaattg
     1021 aactgtacga aaaaatcgta cagttgaaat taaaagcccc agacggaaaa atgcgggaaa
     1081 ccgatgccac ggatttacaa ggcattttcc gtattattca gtctgtgcca agcccgaaag
     1141 ccgagccgtt gaaaatgtgg ctggcagagg taggcaaaga gcggattgat gagattatcg
     1201 atcctgaatt gaccattgac cgagctttgg ctacttactt gaaaaaggga tattcccgtg
     1261 agtggattaa ccaacgcttg caagccattc aggtgcgaaa agaactgacg gatacttggc
     1321 aagatcacgg tgtgcaagcg ggcagagaat ttgcgattct caccaatgaa atcacacagg
     1381 cgtggagcgg tatgactact cgccaatata aggatttcaa agggctgaaa aaggaaagtc
     1441 tgcgagacaa tatgacgacc accgagttgg tgctgaatat gcttgctgag gctgccacca
     1501 aagacatcgc tcaaatcagc cacccacagg gcttggaaga aaataaaacc gttgccaaac
     1561 ggggcggaaa tgttgcaaaa gtggctcggg aaagtttgga ggcagagacc ggcaaaccgg
     1621 tgattacgca acaaaatgcg attgatttcg ctgcggtgat tgaacaagtg gcgaaacagg
     1681 tgaagaaata agtgcggtcg gttttttgca agtttttgga agaatttgac cgcttgtacc
     1741 ccatacgagc cgtatggggc tagataaacc aagctactcc gtagcttaga gaggcagtcg
     1801 cagcgcgact gggattattc agcctagcac ggctcgtgct aggcacacag gaacaataat
     1861 atgcaaaaat ccatcattat ccccgccctc gaccttatcg atgggcaagt agttcgcctg
     1921 catcagggcg attatgcgaa acagacgact tatgccgatg acccgattgc ccaatttgcc
     1981 gactacttgg cacaaggggc ggagcagtta catttggtcg atcttacagg ggcgaaaaat
     2041 ccggctcaaa gacagaccgc acttatcggc aaaattattc gtgaaaccca ctgcaaaatt
     2101 caagtgggcg gcggtatccg caccgagcag gatgtggcgg atttacttgc tgttggagca
     2161 aaccgtgtgg tgattggttc gactgcggtg aaagagcgtg aaacggttaa aggctggttc
     2221 aaaaagtacg gtgcggagaa atttgtgctg gcactggatg tgaacattga tgcaatcggt
     2281 caaaaaatca ttgcgattag cggctggcaa gaggcaagtg gtgtgtcgct cgaggagttg
     2341 attgaagatt atcaaaccgt gggcttgcaa cacgttttat gcaccgatat ttcacgagac
     2401 ggcacactgg caggttcaaa tgtggatctc tatcgagaaa tctgtgccaa atacccagat
     2461 attcaatttc agtcctcagg cggtatcggc tcacttgcag atattgctgc tttaaaaggc
     2521 acgggcgtgg ctggcgtaat tgtcggtcgt gcgttgttgg aaggtaaatt taatgtagcg
     2581 gaggcaatcg aatgttggca aaacggataa ttccttgttt agacgtgcgt gacgggcaag
     2641 ttgtgaaagg cgtgcagttc cgcaaccacg aaatcatcgg cgacattgtg ccactcgccc
     2701 agcgttatgc ccaagagggg gcggatgagt tggtgtttta cgatattacc gcctcaagtg
     2761 acggcagaac ggtggataaa agctgggtgg aacgtgtggc acaggtgatt gatattccgt
     2821 tctgtgtggc aggcggaatc aaaaccattg ccgatgcgga gcagattttc gctttcggag
     2881 cggacaaaat ctccatcaat tccccagccc ttgccaaccc cgagctgatt accgaactgg
     2941 caaagcgctt tggcgtgcag gcggtggtgg ttggtattga tagctggttt gaggcagaaa
     3001 ccggcaaata ttgggtcaat caatataccg gcgatgaaaa acgcacccgc caaaccgaat
     3061 ggcaattgtt ggattgggtg gaggaagtgc aaaagcgagg agcaggcgaa atcgtgctga
     3121 atatgatgaa ccaagacggc gtacgcaacg gctacgattt ggtgcaactg aaaaaagtgc
     3181 gtgaagtttg ccaagtccca ctcatcgcct caggcggtgc aggcgaaatg gtgcatttcc
     3241 gtgatgcttt tattgaggca aatgtggatg gtgcgttggc agcgagtgtg tttcataaac
     3301 aaattatcaa tattggggag ttgaaggaat atttggcgaa ggaaggggtt gaggtgcgta
     3361 gatgattaag attactgcct tagatcatct ggttttaacc gttgccgata tgcaaaaaac
     3421 cattgatttt tatacgacca ttttgggtat gcaagaaatc gcctttggcg ataatcgcaa
     3481 agcgcttttg tttggcacac agaaaatcaa cctccaccaa aaaggtgcag aaatcctacc
     3541 caatgcccaa aatgccgatt gtggcacggc agatttatgc ctcttaacgg taactccact
     3601 tcaggaggtt atctatgtgt tacagcgaca tcaggtggag attttggaag gtgggattgt
     3661 gcctcgtacg ggggcagtgg gaaaaattga gtcggtttat tgccgtgacc ctgatggtaa
     3721 tttgattgaa ataagccgat atgtctaaac aagcggtcaa aaaaggaaga aaaaatgcaa
     3781 aataaaatag actggcaaaa agtggacggc ttactgcccg ttatcgtcca aaacgcccaa
     3841 acctgcgaag tactgatgtt aggatatatg aaccaacaag ccctcgaaaa aacgctggct
     3901 gaaaagcgag tgacttttta ctcccgtact aaacaacggc tgtggacgaa aggcgaaacc
     3961 tcgggcaatt tcctaaacgt ggtggatatg agtttggatt gtgataacga caccctgtta
     4021 atcctcgcta accctatcgg cgaaacctgc catacggggg cggagagctg ttttcatcag
     4081 tttgaacaag aacaaccaga ttggatcttt ttcagcaaat tagaacgaat gatagccgaa
     4141 cgtaaaaatg ctgatccgga aagttcttat accgctaaac tttacgccaa aggcacgcca
     4201 aaaatcgtcc aaaaagtagg ggaagaggca gtagaaagcg tgattgcggc aatgaaaaat
     4261 gatcgggaag agttggtcgg tgaagtggct gatctgatgt atcacttaac ggtgttattg
     4321 cacaatgccg atctctcgtg ggcagagatc aatgctaaac taaaagaacg ccacaaaggg
     4381 attgggttac acccagaagg ctcaaataag taaaatgcaa gcggtcaaat ttcaccgttt
     4441 ttttacaaat tgcaaaaaag acaagaaact tgaccgcttg tttagcttaa tttaacccta
     4501 acttacttaa tttttcagtt tcttccttaa agccttcaat cgccgctttg tcaaagaaat
     4561 attgtgtccc gcagcattca cattgcatat cgatcacgcc ttgtttttcc tccaacattt
     4621 cttcgatttc ttctgccggc accagtaata atgcggagcc tgaacgctct cttgagcagc
     4681 cacatttaaa ttcagtatct tgtggtgggt aaacttctac ttgctcttcg tggtagaggc
     4741 gatagagcaa ttcttctgcc tctaaaccaa ataactcttc atcttttacg gtttcagtga
     4801 gcgtggctaa atgctcaaaa tcatctcttg agcctgtgcc gtccggcata atttgtagca
     4861 acataccgcc tgccactgct ttgccttcaa attcgcctgt gcggataacg aggtgggttt
     4921 gtaattgctc ggagcgggcg aagtaatctt ctaaacattc acgaatggtt ggtttatcga
     4981 gagcaatcac cccttgataa cgttcaccat cggttgggat aatagaaatc actaatacac
     5041 cattgccgat catttccgct aacgaggctg tgtctgcaat atctgcctga acacgggcta
     5101 aagcacggag ttgctgttgg tcgttaccgt tcacaaccgc caattttaac gggccgtcac
     5161 cttgaatctg cacagtaatg ttgccgttaa atttcattgt tgcagtcagc aaactggttg
     5221 cgactaacat ttctccgagt aaattttgta ctgctttagg gtagtgatgg gtgtttaagg
     5281 tctcggtaaa ggtgttgttt aaacgcaccc attcgccccg taccgctcgg tctttgaata
     5341 aatagcggta gagtttgtca ttgtctttgg tgtaattcat tttgattcct cgttgcaagc
     5401 ggtcgattat tactcacaaa attatttcta attttgttcg ctcctacgga gccgttggca
     5461 aagccaacgt tcaaaatgca atgcattttg tggctaaaaa tgtgcaaatc gaacgctgta
     5521 ggggcgaatc aatattcgcc cgaaataatt atataggggc gaaaaatttt tcgcccctac
     5581 attaggatat tcaatatagg gattattttt ctgattgcaa gggcttagct aaattcttgc
     5641 tctttgaatt tgattaaatc ccgccgttct tttttgtttg gacggcgatc agggtgtggc
     5701 attgaaagag cattcgcttt gcgggcaaat accattgcct cacggtgttt aatgcttttt
     5761 tcggtttcac tgtagagcag ttgggcttcc ggagcccctc ggcgttggtc actgagggct
     5821 aacacttcca cctctttttc ttcattgcct tggcgaagtt tgatgatggc accgatctcc
     5881 accgctttgc taactttagc tctttgccca ttataatgga ctttaccccc ttcaatcatt
     5941 gctttggcaa tcgaacgggt tttataaaaa cgagccgccc aaagccattt atctagccga
     6001 acttcggcgt cgttttgttc tttttcgtgt ttatttttca ttttctgcct taaaatcaaa
     6061 acaatagtcg aaatattaga gcgaaagtga gatttttcaa ctaaaataac tcaaaaaggt
     6121 gagataaaat gataaaacaa cttcctgaaa ttttgaacat taaaacagta gcgaaatctc
     6181 gcatttttga ggtgcaagcg gtcgatttac gcttttctaa tggcgaagag cgaacttacg
     6241 aacgacttac gccgaatcgc cgttcttcgg taatggtgat tccgattcaa aacaacgagc
     6301 tgatttttgt gaaagagtat gcggtcggct cggagcgtta cgagctgggt tttccgaaag
     6361 gcattgtgga tgcaggtgaa gagccgattg agagtgcgaa ccgtgaatta caagaagaaa
     6421 ttggttttgg ggcgaaaaaa ttagattttc tgcggtcgct ttacagttcg ccaagccata
     6481 tgtacggctt aatgcacctg tttttggcac aagatctgta cccatcaaaa ttggaaggcg
     6541 atgagcctga accgctggaa attgtgcgtt atccgttgga taaaattgat caattattgg
     6601 cagatcctga ttttgccgaa gcacggaatt tgtccgctct atttatgcta cgagaatact
     6661 taaaaaaata ggcaaggagc tattatgcaa acgctaactc aacccctact cgagaatatt
     6721 atcaatattg ccaaagcagc cggtgagcag ttaaagcagc tttatgcccg ctcggtggca
     6781 attaaaatca aagccgattg cacaccggtg acggaagcgg atctgattat cagccaattt
     6841 ttaactgaac gcttgaagca actcacacca gatattccgg tattatcgga agagttttgc
     6901 gatattccgt ttgccgaacg ccaacaatgg caagaatatt ggattatcga cccgattgac
     6961 ggcacacaac agtttattaa ccgcaccggt caattttcag tggtgattgc gttagtgcaa
     7021 aaacgtgagg gtagaaatca gccggtgctg ggcgttattc atgctccgat attaggaaaa
     7081 acctatttta gtatggaagg tagcggtagc tttttgcaag aaaatggaga aattcgaccg
     7141 cttgtcaaac cgaaacgtgc ggagaatgcc cttttgattg ttaccgtagg cagcgattta
     7201 catgcagaac aagctaaaaa tgccatttca gccccacaaa ttgagtgtgt aaaatatggt
     7261 tcgggcagtc taaaagccgg tttagtggca gaagggaaag ccgattgtta tatccgtttt
     7321 ggtgacaccg gcgaatggga tactgctgtg gcagaagtgc tgttaagtga aatgggcggc
     7381 aaaattttcg actttaattt ttcgccgctg acttataatc agcgagaaag tttgattaat
     7441 ccttattttg tgatggtggc tgacggctcg atagattggg ataaaatatt tttattcaaa
     7501 taggtagttc cgattagcaa tttttatgat aatcttgcac ccaacaaaat tttaacaatt
     7561 agcaatagga taaataaatg aatgctgaaa atagctgtat cgtcattttt ggtgcttccg
     7621 gtgacttaac ttttcgtaaa ttaattcctg ctctttataa cttatataag attggcagat
     7681 tgggcgagca tttttccgtc ctaggtgttt ctcgttcaga attaaccgac gaatctttcc
     7741 gccaaaaaat gcgtgatgcg ttagtcaaat ttgaaaaagc aagcggtgaa gaattagata
     7801 aattttgcga acatctttat taccaagctg taaatacctc tgatgcagtg gattatgcca
     7861 agttgctgcc tcgtcttgat gagctacacg ataaatatca aacagccggt aacacgcttt
     7921 attacctctc cacgccacca agtttatatg gcgtgattcc ggaatgttta gccgctcacg
     7981 gcttaactac cgaagagttt ggctggaaac ggattattgt tgaaaaacca ttcggctacg
     8041 atatcgaaac cgccaaaaaa ttagacgtac aaatccacaa atgctttgaa gagcatcaaa
     8101 tctaccgtat cgaccactat ttaggtaaag aaacggtaca aaacttactc gttttacgtt
     8161 tttctaacgg cttatttgaa ccgctttgga accgtaattt tattgattat gtggaaatta
     8221 ccggggcaga atccatcggc gttgaagatc gtggcggtta ctatgatggc tcgggggcaa
     8281 tgcgtgatat gttccaaaac cacttattgc aagtattagc catggttgca atggagccac
     8341 cggcaattat taatgctaat tcaatgcgtg atgaagtcgc aaaagtgcta tattgcttgc
     8401 atccgctaac tgaagaagac gttaaacaca atgtggtgtt aggtcagtat gctcgtggca
     8461 cggtagacgg caaagaagtg ccggcttact tggaagaaaa aggcgtgccg gctgattcca
     8521 acactgaaac ctttatggcg gtaaaatgtg aaatcgataa ctggcgttgg gcaggtgtgc
     8581 cgttctatgt gcgaaccggt aaacgcttac caacccgtgt gacggaaatc gtaattcatt
     8641 ttaaaactac accacacccg gtatttagcc aaaatgctcc ggaaaataaa ttgattattc
     8701 gtgtgcaacc ggacgaaggc atttcaatgc gtttcggctt gaaaaaaccg ggagcaggct
     8761 ttgaagcgaa agaagtctca atggatttcc gctattctga tttaagttca tcatcaagct
     8821 tactcaccgc ttatgaacgc ttactcttag acgcacttaa aggtgatgca accttatttg
     8881 cccgtactga tgctgtacac gcttgttgga aatttgtgca accgatttta ggctacaaag
     8941 ctaatcgtgg gcgtgtgtat gaatatgaat ccggcacttg ggggccaacc gaggcagata
     9001 aattaatcgc cagacacggc aaagtatggc gaaaaccgtc cggtacaatg aagaagaaag
     9061 tgtaaatttc agttcccctc ttttctaaag aggggtgatc taacgaggca aattatgaat
     9121 aaagttattt tccccaccgc ccaagctgcg gttgaacaaa ttgctaaaga gtttattgaa
     9181 tacagccatc aaaaccgccc ggtgcatatt tccctttccg gtggttcaac ccccaaatta
     9241 ttattcaaaa ccttagctca agcaccgttt aataccgaaa ttcaatggca aaacctgcat
     9301 ttctggtggg gggatgatcg aatggttgcc ccaaccgatc ccgaaagtaa ctacggcgaa
     9361 gtgcagaaat tactgttcga tcacatcgac attccaagcg aaaatattca ccgcattcgt
     9421 ggtgaagaga atgtagaaca agaacttgca agattttcgg cagaattgac cgcttgtgtg
     9481 ccgaacttgg cgtttgattg gattatttta ggaatgggaa cagacgggca taccgcctca
     9541 ctgttcccac atcaaacaga ttttaatgat cagaacgttg ccgtgatcgc caaacaccca
     9601 gaaacagggc agatccgcat ttccaaaacg gcatctttaa ttgaaaaagc caaacggatc
     9661 acttacttgg tcacaggagc aagcaaagcg gaaattttaa aagaaatcca aaccactccg
     9721 gcagaaaatt taccttatcc tgccgccaaa attcaggcgg aaaatggggt aacggaatgg
     9781 tatttggata gtgaggcggc taacttactc taggtcacaa tcagtgacct ttacaagcgg
     9841 ttaaatttta gaaaaatgtt gcaaagtatt tttgtgatat tcatcgaaaa agcagaaaaa
     9901 tctgctcgtg gtataggcca aaaattggca tagtctttct tattttgaga tcacaaaagt
     9961 gatcttcact gaagaataag gaagaaagat gaatccaatt caattaattg aaccaaacat
    10021 taactctaaa atttttacta ttcgtggcga gcaagtaatg ctagatgttc atttggcaga
    10081 gctttatcag gtagatactc gaacctttaa ccaagcagta aaacggaatg aagagcgatt
    10141 tcctgacata tttcgttttc aattaacaga aaacgaatgg ctatctttaa gatcacaatt
    10201 tgtgatctta aacgaaaata gtgggcgtgg ccaacatagg aaatatcttc cttatgtctt
    10261 taccgagcaa ggcattgcaa tgctttcggc agtattgcgt agtgaagttg cagtgcaagt
    10321 tagcattaag attatgcaag cctttgtgca aatgcgtcat cttttgcaaa caaatagtgg
    10381 tttggtacaa cgcttagaaa gtgtagagcg taaacagttg gagatgtctg ggtagttaga
    10441 gcaggtgttt caatctcttg aaggcaataa gcctaaaatg caaggggttt tctttgaagg
    10501 tgaaaccttt aacgcttatc agtttgttac ggaattagtg agaggtgcaa aatcatcgct
    10561 gattttaatt gataactatg tagatgatac cgttttaact ttatttacga aacgatcgca
    10621 taacgtatca gttacgattt atacgaaaca agtatctaag caacttgcat tagatttgga
    10681 aaaatataac agccaatatg ctcacattaa tgtgaaaata tttgataaat ctcacgaccg
    10741 atttttgatt attgatgaaa aagagcttta tcatatcggt gcatcactta aagatttagg
    10801 taagaaatgg ttcgcttttt ctaaaatgga tttatcaatg agccgcattt tagaaaagtt
    10861 agcggaaaat caataaggta tattaatgaa aacactcggc attttaggtg gaatgagtgc
    10921 ggaaagcacg gtttcttatt atttagatat taatcgctcg gtgaataaag tattaggtgg
    10981 aaatagcagt gccaagattt taatttcgag tgtcaatttt gaagagattg tacaatgcca
    11041 aaagcaggga aattggcaag cagccgctga aattttatct gaacaagcta gattgctaga
    11101 acaagccgga gcagaaggca ttttattggc aaccaacaca atgcacaaaa ttgccgatca
    11161 aattagtagc catatctctg tgccgttttt gcatattttg gactgtgtgg ctgaggcgat
    11221 ttcagctcaa ggtctgcaga aagtagcact ccttggcaca aaatttacta tgagtgataa
    11281 tttttacaaa gacggtttat tggagcgtgg tatcacatca atagtaccag atgaggaaac
    11341 gcaacaagaa attcatcgca ttattttcga ggaactctgt ttaggcaaga ttactgaaag
    11401 tgccaaagcg ttttatcttc agactattca acaacttagt gaacaaggtg cagaaggtgt
    11461 gattttaggt tgtaccgaaa tcgggttgct gattaaccaa aacgacaatc cgttaccgtt
    11521 tttcgataca gcagcattac acagccaaat ggcggtggag tttattttag gttaataaat
    11581 gttacaagcg gtcaaatttg caaaaaattt taccaattcg accgcttgca tagaatcaaa
    11641 aacaatagga gcaaacaatg tcacaaaaag gcgatatcgg cgtgattggg ctcgccgtaa
    11701 tgggtcaaaa tttaattttg aatatgaatg acaacggctt taaagtggtg gcgtacaacc
    11761 gcactacttc aaaagtggat gagttcttag aaggtgcggc gaaaggcacg aacattatcg
    11821 gtgcttactc gttagaagat ttagcggcga agttggaaaa accgcgtaaa gtgatgctaa
    11881 tggtgcgtgc cggtgaggtg gtggatcagt ttatcgaggc tcttctgcca catttagaag
    11941 aaggcgacat catcattgat ggcggtaact caaactatcc ggacaccaac cgccgtgtga
    12001 aagcgttagc ggaaaaaggc attcgcttta tcggctcagg tgtatcgggc ggcgaagagg
    12061 gtgctcgtca cggaccgtca attatgccgg gcggtgatga atctgcgtgg caatatgtga
    12121 agccgatttt ccaagcaatt tcagccaaaa ccgacaaagg tgagccttgt tgtgactggg
    12181 ttggtcgtga tggagcaggg cattttgtga aaatggttca caacggtatc gaatatggcg
    12241 atatgcagtt aatttgtgaa gcctaccaat tcttaaaaga tggtttaggt ttaagctatg
    12301 atgaaatgca cgaaatcttt aaagagtgga aaaacaccga attagacagc tatttggtgg
    12361 atattaccac tgatattctt gcctacaaag acgaagacgg cgagccattg gtagagaaaa
    12421 ttctcgacac cgcaggtcaa aaaggaacgg gtaaatggac tggtattaac gcccttgatt
    12481 tcggcattcc attaacactg attaccgagt cggtattcgc ccgttgcgta tctgcgttta
    12541 aagatcaacg tgttgcggct tcaagattgt ttaacaaaga aattggtaaa gttgaaggcg
    12601 acaaaaaagt atgggtagaa gcggtacgcc gtgcgttact tgcttccaaa atcatctctt
    12661 atgcacaagg ctttatgttg attcgtgagg cttctgagca attcggttgg gacatcaact
    12721 acggcaatac cgccctatta tggcgtgaag gttgtattat ccgcagccgt ttcttaggca
    12781 acattcgtga tgcgtatgaa gccaacccat atttagtgtt cttaggctca gacccatact
    12841 tcaaagatat tttggaaaac tgcttggcag attggcgtaa agtagtggca aaatcggtgg
    12901 aaatcggttt acctgtacct tgtatggcgt cagccattac cttcttagat ggctacacct
    12961 cggcacgttt accggcaaac ttactccaag cacaacgtga ctactttggt gctcatactt
    13021 atgagcgtac agacaaagct cgcggtgagt tcttccacac caactggaca ggacgtggcg
    13081 gtaataccgc atcgaccact tatgatgtat aattaatctt tttgagccac ttaattcgat
    13141 attaagtggc ttttttattg gatttttctt caaaatatct tggagtgaat gtttacaagt
    13201 ttgtataata atggagcgat ttttcattta tatttaagaa gaacctatgc ttaccgatca
    13261 agatattttt aatcgctacc aaacaaaaaa atcagaattt gaaaaacagg cagatatttc
    13321 ccttattggg cattccctgt ttgatatgtg gggcgatatg gaaaacggca cgccgaattt
    13381 agcaggaaaa acagttgcca atttgggctt atcaggcacc agcacccgcc aatatttgga
    13441 tgtgattacc cgacaagagc gaattcaaca cgttggcgat aatgtattta tttttctagg
    13501 cgttaatgac attgtaaaag agccggatta ctcgccaaaa caagtgttag agtggattgg
    13561 cgaaattgtg gattctcttc gcaaaattaa tccaaatgcc aacttttttc tattggaagc
    13621 cacaccggtt aataatatta ccaccaccaa taatgctgca ataaaagagc tcaatgcgta
    13681 ttttgaggca aatattccat ctgatttgac ttatgtaaaa acgtgggaat attttgctga
    13741 caaagaaggg aatttagatc taactttatg ccacgatgga ttacacttca cccaagcagg
    13801 ctatgaccgc ctagaggcga ttttaaccaa acatttataa tgaaaagctt caataagcaa
    13861 gcggtctgaa ttagcaaaaa atttccaaat cctgaccgct tgttagttaa ttacagtgct
    13921 tcaatctctt gatactgcac ctgcaatttc tctaatccac tcaggtactc ttgcattttt
    13981 tcacgctctt tggcgatgac ttgctctggg gctttggcga caaaggcttc gtttgaaagt
    14041 ttgccttcaa tgcgagccac ttcaccttta agtttatcca tctctttggt gaggcgagcc
    14101 agctcagctt ctttgttgat aaagcctgcc attgggatca agatctcacc atttgcgacc
    14161 agtttcgcta ccgatagcgg tgcattttca ccattttcca gcactttcac gctatcaagt
    14221 tttgccatcg atttgagcaa cacttcgtta gcgttgagaa tagagacttc gtccgcagag
    14281 aaattacgag cgattaaatc taaacctttg cttggtgcga tgttgctttc cgcacgaatg
    14341 ttacgcaccg ccacaatcac ttctttgata aagttgattt gactttcggc ggtttcatca
    14401 atggcaagcg ggtcaaattg tgggaatttt tgcaacataa tggtatcggc ttcaatacct
    14461 acaaagcctt tcactttctg ccagatttct tcggtgatga acggcattac tgggtggatt
    14521 aaacgcagga gtttttccaa tacattcacc agcgtgcgac ttgcgccacg gcgttgtaca
    14581 tctgtgcctt tgaagaaaat aggtttggtc agctctaaat accagtcgca gaattgatcc
    14641 caagtaaatt cgtagatcgc atttgccact aagtcgaaac ggtattggct gagtgcggtg
    14701 cggaaagttt ccaccgtgcg gttgaattgg ctttcaatcc aacgatcggc aaggctaaat
    14761 tccacgtcgc cttcgcttaa atccaacttg tcattggtca gcacataacg gctcgcattc
    14821 cacagtttgt tgcagaagtt gcggtagcct tctaaacgtt tcatatccca gttgatgtct
    14881 cgaccgttgc tggcaagggc ggtgagggtg aaacgcagag cgtctgtgcc gtgtgccaca
    14941 atcccttcgg caaattcttt gcgggttgcc ttagcgattt tttctgccag ttgtggctgc
    15001 atcatattac ctgtacgttt ttcgagcaaa tcgtcgagac tgatgccgtc aatcatatca
    15061 atcgggtcta acacgttccc tttcgatttc gacattttct gcccttgctc gtcacggatc
    15121 aagcctgtta catacacggt tttgaacggc acttgcggtt tgccgttttc atctttgatg
    15181 aagtgcatcg tgaacataat catacgagcc acccagaaga agatgatgtc aaaaccggta
    15241 atcagcacat cggtcgggtg gaacattttc agttctttgg tttgttctgg ccagcctaac
    15301 gttgagaacg tccatagacc agacgagaac caagtatcca gtacgtcttc atcttgtttt
    15361 aatggtaagt ccgcaggtaa gttgtgtttc gcacgcactt ccgcttcatc tcgtgctaca
    15421 taaacattgc cctgctcgtc ataccacgct ggaatgcggt gtccccacca taattggcga
    15481 gagatacacc agtcttgaat atcacgcatc caagagaaat acaggttttc gtactgtttc
    15541 ggcacgaatt ggatttcgcc gtcttccacc gctttggtcg cgacttccgc caaaggtttg
    15601 acagacacat accattggtc ggtcagcatc ggctcaatcg gcacgccacc acggtcgcca
    15661 tacggcactt ttaagtcgtg tggtttgatt tgatctaaca gcccaagagc ttcaaaatct
    15721 gccacaattt tcttacgcgc ggcaaaacgc tctaagcttt gatagtcggc aggaattggg
    15781 gcggtgtagt cggaaagcgg tttaccgtct gtgccgataa tttcggcctc tgcacgaata
    15841 tcggcattta aggtcatcac attcaccatc ggcaagccgt ggcgtttgcc cacttcgtag
    15901 tcgttgaaat cgtgggcagg ggtgattttt accacgcccg taccgaactc acgatccaca
    15961 tactcatcgg caataatcgg gatttcacgg ttggcaagcg gtaggattac gcttttgcca
    16021 atcagagctt gataacgctc atcttcaggg tgaaccgcca ccgcagtatc gcccaacatc
    16081 gtttcaggac gggtcgttgc caccactaag taatccaagc cgtctgcggt ttttgcacca
    16141 ttagccagcg gatagcggaa atgccacagc gagcctttgc tttctttgtt ttccacttcc
    16201 aagtcagaaa tcgcagtatg cagtttcgga tcccagttta cgaggcgttt gccacggtaa
    16261 atcaagcctt cttcgtgcaa gcgaacgaac acctctttta ccgcattgga taagccttcg
    16321 tccatcgtaa aacgctcacg atcccagtca atcgagttgc ctaagcgacg catttgctgg
    16381 ctgatcgtgc cgcccgaata ggctttccaa tcccagattt tgttgataaa ggcttcacgc
    16441 ccataatcgt ggcgggtttt accttcttcc gctgcgattt tacgctccac caccatctga
    16501 gtggcaatcc ctgcgtggtc agttcctgtt tgccaaaggg tattgttgcc ctccatacgg
    16561 ttaaaacgaa tcagcgtatc catcaaggtt tgctggaaag cgtgccccat atgcaaactc
    16621 cccgtcacat tcggcggcgg aatagcgata cagtagctcg gtgcattaat atcttcactc
    16681 ggcttaaaat agccttgcga ttcccagtgt tggtagagcg cttgctctac agcggaaggg
    16741 ttaaaacggt cttccattgt gaattgtttt gtcattggtt ttgttttctc ttgtttaata
    16801 attttttcac tagcttaatc ttataaaaaa gatctttgcc gtaaatgctt ttataggtaa
    16861 ttagttattt aaattaaggt caactagaag attaattggg aattttttgt tcctcttgca
    16921 tttttcttcg tttttcccat aattgctttc ggctatttaa acagctttgc tcaatctctt
    16981 taatatcatc ttctatattg gatgaaaaat tgattaattt gattgtcgga ggaaatatac
    17041 cggttttatc ttcttgcgta gttaatgtta gtgttcctag attactgtta atttctttaa
    17101 ttttaaatgt tgatagctcg gtatatcccc cactaacaag ataactcaat ttcaactctc
    17161 tatcgaaaat aagatttaat aatgttggct tagggctttc caatctaaaa ctccaagtta
    17221 gaggtattaa ctcacacaga gctgttgaag tcatttcccc taaaatcgaa ttgtcatctt
    17281 tattaaccat aaattcaatg ataacatttg gttgctcttc aggtatgttc aataatttat
    17341 agtcgataat gtaatttgta tttgtagacc ataaaccatc cagtttttta ttatataggt
    17401 aattctcctc gaaatttttc caaataatag gcatgtttgc gatgcgttct aaaatatcag
    17461 ttgtgaagat actccatatg gcagatataa gaataatagg aattttgtta ttttttatga
    17521 actgttttaa gccattctct tttttatgag taccaataac ttttttagac tttttcctat
    17581 tctgtttcat ctttgtgttt ttgttccaat atccccgatg gtgatcgtct tcgacgagag
    17641 cttatttatt taagaaccta tcagagatag gcataagcgg tctgtttcga gaagtttttt
    17701 gcaaagtttt tctttaatcc gacagcttgt cacccacaca caagccgtgt ggggttacgc
    17761 atagctgagc cactttgtgg ctctaagtta cagctccaaa ggagctggga ttgtcgagcc
    17821 tagcacggct cgtgctaggt ggttttaaac cctaattcca ctaattcatc acaaagctga
    17881 ttacaccaat tcggtatttt gtctgaaatt tttatcactt tcttatcagc aatctgcaaa
    17941 atcaaattcg gcttggtttc tgaattatca taaatcagtg tttcatcatt gataaaaatc
    18001 gcttcaatta aattttcacg gctaatgtga tagcgttttc taatggtttc ttcatcaata
    18061 aaatgtccgc cggctttcac tcttgctttt acccgtgcga tgttaatttt atagctatcg
    18121 acaccaatat aatttaatcg agttttgaaa tatcctgctt tggcattttc cattcgtttt
    18181 agaatagatt tacccgagag ggttgattcc attgaaaatg caacctgatt ttttactgca
    18241 aactgaaata gttcgattgc ttttctgccc gcctcaatat cggccaatct tggattgagt
    18301 gggttaatct gcatcgcaat attatcggaa tcaatcacaa tctcgacttt atcttgattg
    18361 aaagaacgta aagtagattt gccggctccg tttgtgccac agtaaaaaat tgctaggtta
    18421 ttgtgcatat tcaatcactt tttccgtacc gtccggataa tgctgaatta aatccccatt
    18481 ttctcggcga tacgtcagca cttcgtgctt tttcttttct tcaaaccatg ctgtaaagag
    18541 aatatccagt tcacgttgtt ttttcagtaa ttcttcacga cttgtcattt tatgtcctct
    18601 gtttcagaat cgccaaatac ctttccaact cagctaattc atactgacta atcaattcaa
    18661 ccaaactact aatatcttgt tgatttttat ggaaatcatc aaaacattgg taatattggg
    18721 ctcgattggt aaatttaata tcaatcggta aatagccctg ttttaataat tcaaaattaa
    18781 tcagtaatcg ccctgtgcgc ccgtttccat caataaaagg gtgaatgctt tcaaaggcta
    18841 aatgcagcca actgattgcc tctatgggat gaagtgcggc cagtttttgt tgatattttt
    18901 caatcaataa ttgcatttct tcggcaatta aataaggggg gggtggttca ttttctgccc
    18961 ctaaaattcg tactggaatt ttgcgataaa cccctcggct ttccgcattg cccattaata
    19021 ccagagaatg aatatcttta atcgctcgtt cgcttaatgg ttctttattg gcgactaatt
    19081 cataaatata gttgaatgca tccttaaaac cgataatatc taaatgctcc caaatcggtt
    19141 tttcggcaat ggtcattccc tcttttaaaa tgagcaccgt ttcacgcaaa gtaatggtat
    19201 tgccttcaat tgcattggaa ttatagctgc tttcaataat aaactcttcc cgcagtcgtt
    19261 gaacttcgct ttcagataat ggacggcgtt gtgaaagtgc tgtttttaat tgttcgattt
    19321 tagctaattt attcattcta acaccatatc caaatgcgca atcccatctt ccaaatacac
    19381 ttctgaaacc gctttaaacc caaaactttc ataaaaccct tgcaggtaac tttgggcttg
    19441 ggcgtgaatg ggttgagcag gaaaatgttc gccacaataa tccatcgctt tttgtaccaa
    19501 ttcccttgct aagcctgagc cacgattttc tttcaccacc aacactctac ctatatgcac
    19561 accatcattg gctggaatta aacggcagta agcggtcaga ttttttgcat tttttgcaaa
    19621 gaaatgcacc gcttgcaggt ctttattatc gacttcttgg taagggcagt tttgctcaac
    19681 cacaaacacc gctgtacgtg cgtggtaaat ctcaaacaac tcttgggtgg atagttcatc
    19741 aaagcgtttt gcgtgccaag agaggttttt tagcattgta tcgtttccag ttgccaacca
    19801 agttggcggt attgtttata gcggtcacga gcctgtgctt tggcggtttc ttccaccggc
    19861 acgaaatcaa taatctgggt aaaactgccg ataaattcgg ggagttgggt ttggagtgaa
    19921 atcaacaaat cccgacgttg agcattgcgt ttacctttcc acgaaatttc gataggcgtt
    19981 gggtaagtgg tgatttctcc cgataaattg tgcggcacga acgaatccgg atctcttgcc
    20041 caaagtgctt cgtcaatatt taacgcttgt tgctcggttt cgcatgcaat cagtacccgt
    20101 ttacttaatc gccacgcttg agccgcaagt tcgcaggctt gcatttcagc agcggaaagc
    20161 tcggctgcat cggcttggct taatagataa aattgtactt gtttcacaga atgttcccag
    20221 aaattcaatc agatatttaa acttaatatt ctagctgaaa atgagtaaaa tataaaatct
    20281 aagcgtttgt ttttgcaaaa aattgagaaa aaatgaccac ttgtgttgcg ttgccttgag
    20341 gaactaatta gcttttagac gttctaagag aacaatgcac tatttcaata gttggaaatt
    20401 gtgtagaata cccacttcat ttagctattt tataaggaac ttactatggg cttatttgat
    20461 tttgttggcg acattggtcg taaattattt aataaagaag aagatgcttc aaaagcggtt
    20521 acagagcatt tggcggaaga caatccgggc gttgaaaatg taaacgtaac ggttgaaaac
    20581 ggggtagcga aaatttcagg cattgcttca accgcagcag ctgttgagaa agcggtattg
    20641 atggcgggta atgtggctgg tatcactgag gtaaatattg atgaagtgac cttgcctgat
    20701 gacgtgcaac ttgcaagtga tgatgagctt tatgttatcc aaaaagggga tacgttgtgg
    20761 gaaatcgcca caaaagctta tggtaacggt gcaaaatata aagcgattgt agaagcaaat
    20821 aaagaagtta ttaaagacga aaataaaatc ttcccagggc aaaaaattcg tatcccgaaa
    20881 ggtttataat caaattgaaa gagctaagct ggtcgaaagt ttagctcttt ttgtaggtgg
    20941 tgttagactg aaaatggata ttgaatggca gggtggtatt cataaccttc aactttgaaa
    21001 tcatctaagc tcacccaagt ttctaaatct tctaaggatt ttatatcagg attaatgatt
    21061 aatttaggtg cattgagtgg ttctcgctta agttgaacat cacgcattaa ttctagttga
    21121 tcttcataaa tatgcgcatt gacaatttta tggaacgctt gtcctgcctt atgccctgta
    21181 atttgagcca ttaaagctaa aaaggtatag cattgaatca tattccaatt taacccaagc
    21241 ggtacatctg ccgaacgctg agtactattc aggtaaagcg tgccatcaag tagagaaaaa
    21301 tgatggctgt gtaaacaagg acgtaagcag cccatatgga aagcgccggg gtggtagaag
    21361 gtataaattt caccacggtt atcaattcct tttttcaaat cgtccacaat ttgtcgcaat
    21421 aaatcgactg agccaccgtc tggtttcggg aaattacgcc ctactgcgcc gtaaaccaag
    21481 cccatatcat cttccccttt tcgataggga ttagcaagcc attgtgcatt ttcatttgca
    21541 ttagcgtccc acgattttgt gcctaattga cggaaatcag cagcattact atagcctcga
    21601 atatagccta aaagttcggc aatcgcagct ttccaataac tacggcgagt ggtaactaaa
    21661 ggaaattctc ctttttctac gtcataagtt aagtcagcat taatgactgt gaggcagtgt
    21721 ttgcctgtac gttcatttgc aacccatttg ccttcgctaa cgatgcggtt acataagtct
    21781 aaatactgtt tcattattta cctcataaaa aattttaggt aattttgcca tttattcggt
    21841 aaaatagcta aaactttatg acacaacaca ataaggagtt atggatatga aaggtataat
    21901 gaaatccatt ctgggttttt ccaccgctgt ttttttagca gcttgttcat cgaataaaag
    21961 cggttggaca cgtttaaatg ataatgatgt tgatcagaaa tcttatgcta ttgcttatgg
    22021 tgcaacggct cagacttatg cggatagagt aaatgaaagc tatgatatca attcctttat
    22081 gaatggggta aatgattggt acactaaaaa ggttacattg ccaattgagc aaattagagc
    22141 aataacgatt aatcgaatgt tagaccataa tgtgtatgct tattatagtg gtgtgattta
    22201 tgccgcagat ttgcaggcaa atttcaatca tttagatcct aattgttggg ggcttgttca
    22261 accagcgagt atgacccagg gcattcacga tgcgatgtta gatttacaga agaacaaagt
    22321 tcgtggagat gagtatatca aaaatggggt tgagcaaata ttgcaccttt gtgtaaaaac
    22381 gattgctgaa gatgaaaata aatcgcaatc taaaggtaaa accaaaaagc ataaataagt
    22441 taagctatga caagcggtaa aatttttaaa aaattttacc gcttttttat aaccgtatga
    22501 aatgtttaat atttattcta tgaaacttaa aaaaacagcg ttttgtttat tcaataggca
    22561 aacactcggg atttttcaat tttcaggaaa aagaatttga catcttttta aattctagta
    22621 atatggcgcc cacagacaca gtgagtggtg agatggccga gcaggctgaa ggcgctcccc
    22681 tgctaaggga gtatagggtt aaaaagctct atcgagggtt cgaatccctc tctcaccgcc
    22741 atttacttta tcacgcaccc gtagctcagc tggatagagt actcggctac gaaccgagcg
    22801 gtcagaggtt cgaatcctct cgggtgcgcc attttaattt ttactctatt taaattaaaa
    22861 tggttgctga taaaattaaa taaacttaca attcaaatat acgcacccgt agctcagctg
    22921 gatagagtac tcggctacga accgagcggt cagaggttcg aatcctctcg ggtgcgccat
    22981 ttctatatta tatccattat attcccattt tattttttta ataaataatt aaactataaa
    23041 gtattattcc gttaatttgt aatttcagat aggcttaatg cttagcttga aataatgagg
    23101 attttaaatt gaaaggatta attgctcgcc tttttattgc cgtagcattg ttactgtggg
    23161 cttgggatat gatttttcct tggcaaaaaa tcattcattc agaagcaaat cattatacac
    23221 aaattcagca aagcaaaacg ttaaaggttg gaatgatcaa ccatccactt tcttactttg
    23281 ttggtcctga aggaaaaagt ggcattgaat atgatttagc aacagccttt gctcaatatt
    23341 taaaggtcaa tcttgatatt aaaacttatg atagtagcga gaaattgttt gaggccttaa
    23401 gaaataatga tgttgatatt gctgccgctg ggctgcttta ccattctgaa ttaaacgatg
    23461 aatttcagat aggtccttcc tattattcgg cttcttggca gcttgtttat aaaaagggaa
    23521 gtgctagacc atatcgactt tccgatttgc gggaaaatgt gattattcca gccggttctg
    23581 cggtaattcc aatattaaat cagcttaagg tggataatcc ggaactaaaa tggcagatct
    23641 cggataaatt tacacaagaa gagctattgt taaaagtcgc acaaggtgaa atttcacata
    23701 caattgcaat gtcggttgat atttctgctg cacagcatat taatcctaat ttagccgtag
    23761 ggtttgattt aactgatgaa aacccagtgt tatggtattt agcaaatagt tcttatagtg
    23821 aactgcaatc tgtgctgctg gattttatgt cttattctat ggaaacgggg ctgatatcaa
    23881 gaatagaaga gaaatatttt aatcatttag ctaagtttga ttatgttgat attcagagct
    23941 atttgaatgc aattaaaact attttaccta aatatgaacc cctttttcgg gcacataaag
    24001 gtgaattaga atggcaaatg ctggcggcta tcgcctatca ggagtctcat tgggatccta
    24061 atgcaacttc tccaaccgga gtgaggggaa ttatgatgtt gacaaaagat acggcagata
    24121 gaatgaaaat ttctgatagg actaaccctg cacaaagtat caaagcggga tctgaatatt
    24181 tacatatgct aatgagacaa atgccggaaa ctattcctca agcagataga atttggtata
    24241 gcctagcagc gtataatatg ggattggggc acttgttgga tcttcgtcga ttaacaaaac
    24301 aacttggtgg tgatccggat aattggcttg atgttaaaaa gaatctgcca ttgcttgcgg
    24361 aaaaacgtta ttatgctaat ctaaaatacg gctatgctcg aggatatgaa gcattacagt
    24421 atgttgaaaa tatacggcgt tattatggta gtattattaa ttatcaacga gttgaagagc
    24481 aaaagatgca agaacaagaa aatttaccag atggtcaaat aaaacaggag aattcttctt
    24541 atgagaaaat tgaagaaaaa gaaatcccta ccgacaagga aattacgcct gcgtcaaatt
    24601 aagcaaatta aagatagaaa aagattaatt tctgcacgta gaaaggcatt tatgcagatg
    24661 caacaggcca tctga
//
LOCUS       DANLUT010000013        23392 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLUT010000013 DANLUT010000000
VERSION     DANLUT010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23392
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            191..1738
                     /gene="sbcB"
                     /locus_tag="PXB38_000502"
     CDS             191..1738
                     /gene="sbcB"
                     /locus_tag="PXB38_000502"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL5352860.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELSVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAEQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
     gene            1735..2334
                     /locus_tag="PXB38_000503"
     CDS             1735..2334
                     /locus_tag="PXB38_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL5352861.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEEFLREKGIALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            2346..3164
                     /locus_tag="PXB38_000504"
     CDS             2346..3164
                     /locus_tag="PXB38_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL5352862.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(3200..3673)
                     /locus_tag="PXB38_000505"
     CDS             complement(3200..3673)
                     /locus_tag="PXB38_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
                     /protein_id="HDL5352863.1"
                     /translation="MTALQHDFEQISQHDSLAGVEVQTALKKAIETPNAENLESLSKK
                     LYAFEKEQNPSGYAEKHQDFVAKMTPLYAELAQTVPTQEIAKIKWAAYQFGKNWVKQE
                     KAVREISLPHYGKFERILGLMRINLNAEKPDMAKISELVSELGAVMADFKQVKVK"
     gene            complement(3677..3820)
                     /locus_tag="PXB38_000506"
     CDS             complement(3677..3820)
                     /locus_tag="PXB38_000506"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352864.1"
                     /translation="MKLKALVLIPLLFSSTGLLAKVNVSPLFVQLSDAMAESKKGEFA
                     KSS"
     gene            complement(3831..5027)
                     /gene="efeB"
                     /locus_tag="PXB38_000507"
     CDS             complement(3831..5027)
                     /gene="efeB"
                     /locus_tag="PXB38_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL5352865.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAQKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            complement(5038..5850)
                     /locus_tag="PXB38_000508"
     CDS             complement(5038..5850)
                     /locus_tag="PXB38_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL5352866.1"
                     /translation="MRLTKLAFALSGFFVATQAAALDLTKETEAYKQFVVEQIDQLVT
                     DTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDARLADLAEEGKT
                     EKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVTPELMITGAVDL
                     LNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDAKLSTEIGSRFA
                     AVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLGVLLNK"
     gene            6038..6280
                     /locus_tag="PXB38_000509"
     CDS             6038..6280
                     /locus_tag="PXB38_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5352867.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKAKRNV"
     gene            6519..8537
                     /gene="uvrB"
                     /locus_tag="PXB38_000510"
     CDS             6519..8537
                     /gene="uvrB"
                     /locus_tag="PXB38_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL5352868.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGRSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSVKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQQLKAYLLEV"
     gene            8540..8950
                     /locus_tag="PXB38_000511"
     CDS             8540..8950
                     /locus_tag="PXB38_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352869.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(9171..10259)
                     /gene="purK"
                     /locus_tag="PXB38_000512"
     CDS             complement(9171..10259)
                     /gene="purK"
                     /locus_tag="PXB38_000512"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL5352870.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVDDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHADKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(10278..11243)
                     /locus_tag="PXB38_000513"
     CDS             complement(10278..11243)
                     /locus_tag="PXB38_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL5352871.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LVQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGIVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            complement(11258..11755)
                     /gene="purE"
                     /locus_tag="PXB38_000514"
     CDS             complement(11258..11755)
                     /gene="purE"
                     /locus_tag="PXB38_000514"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL5352872.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            11929..12573
                     /gene="sspA"
                     /locus_tag="PXB38_000515"
     CDS             11929..12573
                     /gene="sspA"
                     /locus_tag="PXB38_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL5352873.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKNPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            12573..12980
                     /locus_tag="PXB38_000516"
     CDS             12573..12980
                     /locus_tag="PXB38_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL5352874.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            13177..14136
                     /locus_tag="PXB38_000517"
     CDS             13177..14136
                     /locus_tag="PXB38_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352875.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            14216..14476
                     /locus_tag="PXB38_000518"
     CDS             14216..14476
                     /locus_tag="PXB38_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL5352876.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGIVGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(14526..15416)
                     /locus_tag="PXB38_000519"
     CDS             complement(14526..15416)
                     /locus_tag="PXB38_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5352877.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERGCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            15546..18152
                     /gene="topA"
                     /locus_tag="PXB38_000520"
     CDS             15546..18152
                     /gene="topA"
                     /locus_tag="PXB38_000520"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL5352878.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQIMPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(18202..19140)
                     /gene="yvcK"
                     /locus_tag="PXB38_000521"
     CDS             complement(18202..19140)
                     /gene="yvcK"
                     /locus_tag="PXB38_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL5352879.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(19154..20230)
                     /locus_tag="PXB38_000522"
     CDS             complement(19154..20230)
                     /locus_tag="PXB38_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5352880.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(20261..21016)
                     /locus_tag="PXB38_000523"
     CDS             complement(20261..21016)
                     /locus_tag="PXB38_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5352881.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            21168..21377
                     /locus_tag="PXB38_000524"
     CDS             21168..21377
                     /locus_tag="PXB38_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL5352882.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(21426..22148)
                     /gene="bioD"
                     /locus_tag="PXB38_000525"
     CDS             complement(21426..22148)
                     /gene="bioD"
                     /locus_tag="PXB38_000525"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL5352883.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVGWVANRVNPGLRHYHELIELLTQKINAPLLGQISYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
     gene            complement(22196..23383)
                     /locus_tag="PXB38_000526"
     CDS             complement(22196..23383)
                     /locus_tag="PXB38_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL5352884.1"
                     /translation="MFSDNKALHLGKIYHLIEQFELISRTDLAKLSGLAPASVTNLTK
                     ILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIY
                     KQDYTISAENYPRLNDFILNFITKFRQLYCVNTSQILAVSISVIGKINAEKDSITQLG
                     NKNIFCNITSKLSPLFHCPILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSV
                     LLSGSLLSKHSKMNVDNMLMPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRY
                     LPNNLKSQEQKISWLCQKIDENQPLALAILSHITDNLAYALMNLVNIFSSEKIMLNSP
                     LIKIKEPLFTQISEKLHKNLLQTNLKIDLVTSQYDWNSPLIACSAIKQGIYDGNLIKD
                     RIN"
BASE COUNT         6981 a         4493 c         4978 g         6940 t
ORIGIN      
        1 gtaacagatt tatgcaagtt tttttcatat ttccttaggt aagacctccg ccccttttcg
       61 ctttttttga ttaggggctt ttttttattt tagcatttgc aaatttctaa cggaaattga
      121 ccgcttgtat tccctccttt ctgccttact gtgctacaat cagcccaatt ttttctaaca
      181 aattgaacga atgagcgata aattctcttt tttcttttac gattatgaaa gtttcggcgt
      241 gagtccggcg ttagatcgtc cggcacaatt tgccggtatt cgaaccgatg cggattttaa
      301 tattatcggt gaaccggtaa tgtttttttg taagcaaacg ccggattatt tacccagccc
      361 cgaagcggtg atggttaccg ggattacacc gcaacaatgt aacgctgaag gtgtatctga
      421 gccggaattt gcagcccgaa ttcacgctga atttagccga gcgaatactt gtactatcgg
      481 ttataacaat attcgttatg atgatgagat gacccgttat accttcttcc gcaattttta
      541 cgatccttac gaatatagct ggaaaaacgg aaattctcgt tgggacttgt tagatttagt
      601 ccgtgcctgt tatgcgttaa gacctgatgg tattgaatgg ccaacagatg aaaccggtat
      661 gccaagtttt aaattggaaa acctcaccaa agccaatggc attgcccatg aaaatgcaca
      721 cgatgcgatg tctgatgtgt atgccaccat cgcaatggca aaattaatta agcaaaaaca
      781 gccaaagttg ttcgattttt tctttaattt acgcagtaaa aaagaagtag agaagttaat
      841 tgacactggt gaaatgacac cgcttgtgca cgtttccggt atgctgggca actatcgagg
      901 aaataccgct tgggttgtgc cactggcttg gcactcaact aatcaaaatg ccgtaattgt
      961 gtgtgattta tcgggcgata tgaatggctt attgactgaa aatgcagagg ttttacgtca
     1021 gcgtttatac accaaacgag atgaattagc cgaaaatgag ttatctgtgc cgttaaaatt
     1081 agtgcatatt aataaatgcc cgattttagc accggcaaaa accttactgc ctgaaaatgc
     1141 agaacgttta ggcatagaca gagctttatg tttggaaaat ttgaaaactt taaaagcaca
     1201 gaaatcgctg attcgggaaa aagtgattga aatttttaat gaagaacgca cgtttgagcc
     1261 ttcgaccaat gtagaaacca ctttgtatga cggctttttc tcgcctgcgg ataaaaataa
     1321 tatggcgatt ttacgcacgc taccgcctga agatttagcc aaccacggct tgaaatttga
     1381 agaccctcga gtagaggcgt tactattcca ttaccgagca aggcactatc cacaaacact
     1441 cagtcgagcc gagcagatca aatggcagaa acattgcaac cagcaaattg aggcaaaagc
     1501 agagcagttc gcccaatcga ttgacgactt gttccaacaa catcacgaca acccggaaaa
     1561 ggtaaaatta ttagaaaatt tgaccgctta cgccgagcag atttcgcaac aacaagcggt
     1621 catttatcgt caaaatgttg caaaagatga aaaattgctg agcgagctta acagagtagc
     1681 ggaacagccc ctagataaaa ccgaaaagct caagatgtta aaagagttga ttaaatgaca
     1741 atggataatt taccgctaga acagcacccg tttgacccta ttttacctga acaagcaacg
     1801 gtggtaatgg tcggcacttt tccacctaca tcggaaaagc gttgtatgga atttcattac
     1861 ccgaattttc aaaatgatat gtggcgaatt atgggcaata ttttttatgc tgaccctaac
     1921 tattttcgag tcggtgaaga aaaacgcttt gatccgattc ggattgagga gtttttgcga
     1981 gaaaagggca ttgcgctctg ttcttcggca aaaacagcga ttcgtttaaa aggaaacgct
     2041 tcagataaag atttaaaaat tgttgatcct atcgatatgg acgaactgtt gctcaaatta
     2101 cccaaactga aatggctatt taccacaggt ggtttggcaa ccgatacgtt gctcggttta
     2161 ttgccggaaa aacacaaagc tccgaaaacc aacgaatggg tggtctatcc ttattccgcc
     2221 acaagagaac tttatttata tcgcctgcct tcgacgtcga gggcttatcc actcagctta
     2281 gccaacaaaa ccgaagccta tcgccaattt ttcaggactg ccggcttaat ttaaggataa
     2341 ataacatgaa atatgattta cacgcccaca gtaccgcctc tgatggcgtg ctttctccca
     2401 ctgaattggt acaacgtgcg gtagagcaag gggtaacaat gctagcttta actgatcacg
     2461 atacgatttc gggcattcaa gaagcgaaaa attttgccca aaatcaaccg cttgagctta
     2521 tctctggggt ggaaatttcg attttatggc aagaaaaaag tattcatctt gcggcgttga
     2581 atattgatga aaacaacgag gagctggtga agtttttgga taaccaagcc caattaaggg
     2641 aagagagagc ggtcgaaatt ggtgaaaaat tagcaaaagt cgggattgca aatgcctatg
     2701 agggggcaaa agcgttggca acaggggaag taactcgggc acattatggg cgttttttgt
     2761 atgaacaagg ctatgtccgc aatattgaac acgcctttaa gcgttatctg ggaatgggga
     2821 aacctgccta tgtgaaaccg agatggagta gtttagaaga cgcggtgaat gttacccaca
     2881 cctcaggcgg tgtgatttcg attgctcacc cgctacgcta taaaatgact gctcgttgga
     2941 ttcgccgttt aatcgcagat ttcaaacaag ccggaggcga tggcattgaa gtatcaggct
     3001 gcggacaaac acctgatcaa cggcaattac ttgcccgttg ggcaaaagag tttgatttat
     3061 atggctcggt cggttctgat ttccactacc caactggctg gattgagctc ggtaaaagtt
     3121 tggaattacc ccaagaatgt aaaccgattt ggacgttatt ttagtgttat cgaggcaaat
     3181 aatttgcccc gattttttac tatttcactt taacttgctt aaagtctgcc attaccgcac
     3241 ctagttcgga aaccagttca ctgatttttg ccatatccgg cttttcagcg ttcagattaa
     3301 ttcgcattaa accaagaata cgctcaaatt tgccataatg gggaagactg atttcccgta
     3361 ctgctttttc ctgttttacc caattcttac caaactgata agccgcccat ttgattttgg
     3421 cgatttcttg agttggcacg gtttgagcaa gttctgcata aagcggcgtc atttttgcca
     3481 caaaatcctg atgtttttca gcataaccgc tagggttttg ttctttttca aacgcataga
     3541 gttttttaga aaggctctct aagttttcag cattgggtgt ttcaatcgct tttttcagag
     3601 cggtctgtac ttcaactccg gcgagggaat cgtgctggct aatctgctca aaatcgtgct
     3661 gtaaagcggt caaattttag ctggattttg caaattcccc ttttttactc tctgccattg
     3721 catcggaaag ctgaacaaat aaggggctga cattcacttt ggcaagcaat cctgtactcg
     3781 aaaagagtaa cggaattagc actaatgctt ttaatttcat ttccttttcc ctaaattaaa
     3841 tcaaacaacg ctttgccaag gtagtcattt tcatctttca caccggcaaa acaggcaaat
     3901 aaaccactgc cgatatgagt gatgtattca ttcattttat ccacattgcc gagagcgttc
     3961 tggattttga taaattgctc cggactttgt tggaaagaga caaacaacaa ccctgaatca
     4021 aattgccctt tatcatcaat accgcttgaa taggagaatg aacggcgtag gattttcagc
     4081 cccgttttat tggcaagatg agcgtgtgaa acttccggaa ttactgcatt gcctttttcg
     4141 tctttttggg ctaaatctaa tttatcaaat tcgtgctgat gcccgattcc ggctccggaa
     4201 tcacggtgac gaccgaaggt ttcttcttgg gattggagat gggtgcgatc ccaagtttcc
     4261 aagaacattt taacacggcg aacggctaaa taagaaccgc ctttgagcca gccctcttgt
     4321 tgcacccata ccgtattttc ctgatctttt aaactttctg cgttggcagt gccgtcttta
     4381 aaaccgaata agttacgagg tgtgtcttga ttggcaaagg agttaaaccc catttgcgac
     4441 catttcattt tgatttcacc acgggcaaca cgcaccaaat tacgcacagc gtggaaagcc
     4501 acttgcggat cgtctgcaca ggcttgaatg caaatatcgc caccggtgta ttctgcttgt
     4561 agttgatcac gagggaaatg cggtaaatca ttcagttctt tcggcttatg tttttcaatg
     4621 ccgagctttg taaagaaatt ggcactgacg ccaaaagtaa gagtgagatt ctgtgccgaa
     4681 aggctatctg cctcaccggt atccgccggt ggaacataag cattagcact ataaggtttc
     4741 acatttttgc caagcgtgag gttacggcta tattccgtcc agttttgaaa caatgttttt
     4801 actttggcaa tgtcagtggt gtctaaatcc agcactaaaa agtagatatg tttttgtgca
     4861 gggctaacaa taccagcttg atgtttgccg taaaagtcgt attgattttg agatttttca
     4921 gatatttgtc gtgattccaa agcgaaagca ggagcagaca ataagcctgc tcctactaat
     4981 gcggtatgtt ttaaaaaatc acggcgagaa gtggtttctg ccatcatttt tgctccacta
     5041 tttatttaaa agtacgccaa gttgagctaa cggctcgcct aattggttta cagcctctgc
     5101 taacgcttta atatccgctt ttgacagttt gttataaggc acataatcat aaccggtttt
     5161 agatttattg tgttttgcta acagcgcatt gacagccgca aaacgagagc cgatttctgt
     5221 tgagagtttg gcatcaattt gctctaattg cgttttaaaa atctcataga ttttttctgc
     5281 accttcaata ttggctttaa aatcgtaaag gtcggtttta gagaaaattt cttcttcacc
     5341 ggttacttta gtagtagaaa cttcgtttaa taaatctacc gcaccggtaa tcatcagctc
     5401 aggggtaact tctgcagtgg gaattttcgc acgcagctct tttacatctt ttaataattg
     5461 ttctgccgtt gcttttgtgc ctttagtggt gtttttctgc cacaatactt tctcgatttt
     5521 atggaaacct gaccaatctt tctcggtttt accttcttcg gctaaatctg ccagacgggc
     5581 atcaatacga gggtctaaat cgccaaaact ttctgcaatc ggttcagaac gttcaaaata
     5641 cattcttgca agcgggtaaa ttttcttcgc tttttgcaca tcgcctttgt ttaagtagcc
     5701 gacaaatttt tccgtatcgg taaccagttg gtcaatctgt tctaccacaa attgtttata
     5761 agcctcggtt tccttagtta agtctaaagc tgccgcttga gtagccacaa aaaagccaga
     5821 aagtgcaaaa gcaagtttgg ttaaacgcat agaaatttcc ttttaataaa aatattgcga
     5881 cataatatcc ttattgcgaa ttattcgcaa aaaataatgc tgattttgtg atgtaaatca
     5941 cattttgttt tgcaaattat tgctaaaaat agaccgcttg cttatctaaa ttagagccat
     6001 tacaatctgc tcaataatca ataagatagg aatagtaatg agtagaacaa ccagcgtaac
     6061 tttagctgag ccattaagcc aatttgtgaa ccaaatggtt gaaagtgggc gttatggttc
     6121 gaccaacgag gtcatcagtg ccgcattaaa aatattggaa gcacaagaac agcaactaat
     6181 tcagctaaga gccttaattg atgaaggctt agaaagcggt gtttctgagg aaaccgttca
     6241 atctattatc agcaaggcaa aggcaaaacg taatgtataa actttctgtt agggcagagc
     6301 gagatttagc gttactttat tcgccctttg ttacgctgtc attaccaccg ctcacattct
     6361 atttattata aaccaatccc aaaaggtatc tttattgtta gggtgttaga tcaaagaatg
     6421 gatcaatata agcagttaca ataaatttgc aaaaatcccg ataaaaacga ccgcttgctt
     6481 gtgctaaaat aaaccgattt tttaagacag gattttctat gagcaagcaa ggcaaaccct
     6541 ttatcctcca ttctcctttc aagccctccg gcgaccaacc aagtgcgatt gccaaattga
     6601 ccgaaggctt aaatgacggc ttggcacatc aaaccttact tggcgtaacc ggctcgggga
     6661 aaacctttac cattgctaat gtgattgcca agctcaatcg cccggcgatg gtgcttgccc
     6721 cgaataaaac ccttgccgcc cagctttatg ccgagatgaa agcgttcttt ccggaaaatg
     6781 cggtggagta tttcgtctct tactatgatt actaccagcc cgaagcctat gtgccggcaa
     6841 gcgatacctt tatcgagaaa gatgcctcta tcaatgagca gatcgagcaa atgcgacttt
     6901 ccgcaaccaa atcctttttg gaacgccgag atacgattgt agtggcgtcc gtttctgcca
     6961 tttacggctt gggtgatgtg gacgcttata tgcagatgat gttgcatttg caagtggggg
     7021 cgatgattgg gcagcgtgaa attctctctc gccttgccga attgcaatat actcgcaacg
     7081 atcaggcgtt ccaacgttcg actttccgag tgcggggcga tgtgattgat atttaccctg
     7141 ccgaaagcga tgaagtagcg ttaagggtag agctgtttga cgatgaaatc gaaaatctgt
     7201 cgctgtttga tccgcttaca gggcgtagct tgggcaaggt gcctcgctat accatttacc
     7261 cgaaaaccca ctatgtgact cctcgggaac ggattttgga ggcaatcgag caaattaagg
     7321 tcgagcttgc cgaccgtcgc acctatttca tcaaagagaa taaattgctg gaagagcagc
     7381 ggatcgccca acgtacgcag tttgatattg agatgatgaa cgagctgggc tactgttcag
     7441 gcattgaaaa ctactcacgc tacctctcgg gcagaaaaga gggcgaagcc cctccgaccc
     7501 tgtttgatta tatgccggcg gacggtattt tggtgattga tgaaagccac gttactgtgc
     7561 cacaaattgg cggaatgtat cgaggcgacc gagcgagaaa agaaacattg gtgcaatacg
     7621 gtttccgtct gccgtctgca ctggataacc gcccgttgag atttgaagag tttgaacgtc
     7681 tttcaccaca gacgatttac gtttctgcca caccgggggc gtatgaattg gagaaaaatc
     7741 ccgatgtggt ggatcaagta gttcgtccaa ccggcttgct cgatccgatt atcgaagttc
     7801 gccccgttgc tacgcaggtg gacgatttac tgtctgaaat tcacaaacga gtggcggtgg
     7861 acgaacgggt gctggtgaca acactcacca aaaaaatggc ggaagatctc accgattatt
     7921 tggacgaaca tggcgtacga gttcgttatc tacatagcga cattgacacg gtggaacgag
     7981 tcgaaattat ccacgattta cgaatgggaa tgtttgatgt gctggtgggg atcaacttat
     8041 tgcgtgaggg cttagatatg cccgaagtgt cgctggttgc cattcttgat gcggataaag
     8101 agggattttt acgttccgaa cgctcgttaa ttcagaccat cggacgtgcc gcccgaaacc
     8161 tcaacggaaa agcgatttta tacggcgacc gcattaccaa ctcaatgcaa aaagcaatta
     8221 ctgagaccga acgccgccgt gaaaagcaga tgaaatacaa cgaagaacac ggcatcacgc
     8281 cacaagcgtt gaacaaaaaa gtgggtgaat tgctcgacat cggacaatcc gtcaagccaa
     8341 aacggggcaa acaagcggtc aaaaaagccg aaaattctgc aaccgactac aagccgaaat
     8401 cccgtaaaga actggaaaaa gagcttaaaa cgctggaaca acaaatgcgt gattttgcga
     8461 aagatctgga atttgaaaaa gcggctgcgg taagggataa gttgcagcag ttaaaggcgt
     8521 atttgttgga ggtttaaata tgatttctcg ttcattattt tcaaaattaa tcttatttgc
     8581 caaaattgtt attttctctc aacttgtttt tatggtggtt atctggattg cccaccatat
     8641 tatgcgggag tacagtaatc cgtttgaacg atttggtacc ctgttcaata atgtgttttt
     8701 gacttttatt attccgatga tggtaagtag tgcggttatt gtttataaag gttataccca
     8761 gaaaaatgaa gataaagtgt tttggattta tatggggttc tttttaattt ggattttggg
     8821 atttatttat tttgagccgg cagtttatga taaatcactg aagatttcag gtgcaggatt
     8881 tggggcgatg ctctctatta tcatttgctc gaagttattg cctaaggaaa caaataaaga
     8941 gcagctctaa gattcttgtg aagaaatctg ttttctcgga ggaagaaaat gctttttgat
     9001 agccatatcc accctgaggg gttttcagat caagatgatg accggaagta gccattatgt
     9061 tgaattattt tgcaaatttt agcactaagt cgaccgcttg tttggtacga gcgaggaagc
     9121 tcgcaccatc gggtaaacag atttgcaaaa aagttacaaa atccgaccgc ttacttgagc
     9181 ttattgattg cccaatctaa tcccgaatgg aaatcttccg ttaggctcgg tctgagttgt
     9241 tccagtagtt caattaagcc gtttttatcg gcgtgagtga ggttgatatg cccaactttt
     9301 ctaccagctc ggacttcttt gccataccaa tgtagttggc taaatgggag gcttagccac
     9361 tgcttgttat gttcaatgcc tattaaatta accatcacgc ttggggcaat ttggtcgagt
     9421 gctggcgtag gtagatctaa taatgcccgt aaatgtaact caaattggct gatggcacag
     9481 ccgagttgtg tccagtgtcc gctgttatgc actcgagggg caagctcgtt gatgagtagc
     9541 ttgtcgtcca caacaaagca ttccattgcc attacgccga catactctaa tttttgcatt
     9601 accgtagcga gcatctgttc ggcttgctgc tggtagaggg cttggttcgg taaattcaca
     9661 tcggagacgg agtaacgtag aatgccgttt tgttgtaaat tgtgagaaat agggtagaaa
     9721 cgggttgagc cgtcacggaa tctcgcccca acaatggaaa tttccccctc aaacgggata
     9781 aatttttcgg caatcacttc gccaaataat tcaggtgtaa tttgatgaat cgagtcttgc
     9841 gttacaatcc attgcccacg tccgtcatat cctccggttc ggcgtttaac cactactttt
     9901 tcgccaatat gctgaaaaat atcttgccaa tgttcggcat tttctagcag ttgccatttt
     9961 gaagtcgcaa gatggagttc atcaagtagt gatttttgcg taaaacgatc ggctaacttc
    10021 ccaaacacat tcaggttcac aaaattcggg tggttaccga gtaattgcgt taaaggcgta
    10081 tctgcccaac gttcgatttc tgcggtaata atgctgtttg gctcaatatc aaacacaggg
    10141 gcatcgaaag ccagcggttt gacttcaata tcaagtggtg ctccggcgta gcgtagcatt
    10201 ctcccgagct ggccgttgcc taatacatac acaggtgggt agattgcact tttttgcatc
    10261 gtggtgttct caatgggtta gaaatagtct gatagtggtt tgtctaaggt ttggctgagt
    10321 aagaccataa gtttaatgcg agctttttgc ccacttaagc ctttggtaaa aataatgcct
    10381 ttttgcttta actgttttcc accgcctaca taatcataga catcttgggt aataccattg
    10441 aatgcccgag aaacaattac aattggaata ttggcattca ctaaagcctc aataccagcc
    10501 agacaactag ggggtaaatt acctgcaccc aatgcctcaa tcacaacacc atcgcatttg
    10561 cttttcgcta attgttccag cagaaaacta tccattccgg cgtatgcttt cagtagttgc
    10621 acgttagctt tagttacttg ttgaattgga taacgttcgt aagtggtcaa tttttggaaa
    10681 aaaatgacag attctttcgt tactaagcca caaggcccaa aggttggggt ttggaaagtc
    10741 gccacattag tggtgtgggt tttggtcaca aatttagcat tgtggatttc atcattcatc
    10801 accactaaca cgcctttatc tcggctttct tcatttaacg ccactaaaat cgcactttgt
    10861 agattgatta agccatcagc acccagttcg ttactggaac gcattgctcc ggtaattact
    10921 accggtatat ttacgctgag ggctaaatcc agaaaatagg aggtttcttc caaggtatct
    10981 gtgccgtggg tgattactat gccatcgaca ttctcctcat tcactgcctt ttcaatccgc
    11041 atttttaact gttgccaatg ctcgatattg atatgcggag agggaatatt aaataacgat
    11101 tcttgcacca attttgctgg gtggtttaaa cgttctaagg cagccaagag aggattttca
    11161 ttggaagggg agaccttacc gtcttcccct tctttcattg aaatagtacc accagtgtgg
    11221 aggattaata attttttaga catcttttat acaatagtta ttcaacacga ggatcaggat
    11281 tatctaatac catctgagtt tgggtttgac ggaaaatacg cagtttctct gcaatatcag
    11341 ggttaaaggc tgctaaaatt tgagcggcta ataagcctgc atttgctgca cctgccggcc
    11401 cgattgcgag cgtaccgacc ggaatacctt tcggcatttg cacaatcgaa tagaggctat
    11461 ctacaccact taacattgag ctttttaccg gcacacctaa caccggcaca atggttttag
    11521 cagcgatcat tccgggcaag tgagctgcac cgccggctcc ggcaataatc actttatagc
    11581 cgttagtctc tgcagtttca gcaaaagaaa agagtttgtc cggtgtgcgg tgtgctgaga
    11641 cgacttcaac gtgatagctc aaaccgaact ggtctaatat ttgggttgct tcagacattg
    11701 tagcccaatc actcttagat cccattacga tcgcaatttc agctttattt ggcattttaa
    11761 atccttatga tactaatgta aaacagtgta atcatagcat acaaagcaaa cgtttgcgta
    11821 gctatttaag aagtgaaaag caatttttag ggctgttatc tgctggttaa aatatgatat
    11881 aatcgacaac cattttattt tttataaatt taatcatcgg agatataaat gacgagtagt
    11941 ataaacaaac gttcggtaat gactcttttt tcggataaaa acgatattta cagccaccaa
    12001 gtgcgtattg tgttagcaga aaaaggggtg ccttatgaaa tagagaacgt tatgctaggc
    12061 agtatttctg aagatttatt agaattgaat ccttacggta atattcctac attggttgat
    12121 cgtgaattag tgctgtttaa ccctcgtatt attatggaat atttagatga gcgtttccct
    12181 cacccaccat taatgccggt ttaccctgtt tctcgtggtc agtgccgttt aaatatgtat
    12241 cgtattgaac aagattggta ttcgcaaatt gatattgtga ataaaaatcc tgaatcagcg
    12301 gaaggcaaga aagcgttagc acagcttaaa gaagatgtat tggcattagc gcctattttt
    12361 gccgctaaac cttattttat gagcgatgat ttcagcttgg ttgattgcta tattgcaccg
    12421 ttattatggc gtatgcaaat cttaggcgtt aaattcagcg gtgcaacggc aaaaccaatt
    12481 aatgcgtata tgacccgtgt attccaacgt gatagtttta tccagtctgt tggcggcgaa
    12541 gcgccaaaac atttaatgga cgataaagac taatgaaacc attaagacct tatctttata
    12601 atgcttacta taactggatt attgatagcg ataacacgcc ttacttatta gtgaatgcag
    12661 aatttccaga cgtagatgtg ccggtagagt ttgtcaaaga agggaagatt attttaaata
    12721 tttcgcctcg ttccatcggg cagtatattg tggctgatga atacattagc tttagcgctc
    12781 gttttcaggg aatgttaaga gatatttata ttccttttgg ggcaatggtg gcgatttatg
    12841 cgcaagaaac cggtgatggt attatgttcc aagaagaagc ctactacact gaagaggctt
    12901 atcaagctcg agttagagca gtagagcagc ctaaaaaaat caaggcgaag aaaacatcta
    12961 ccttaaagtt ggtgaaataa gagatctatt tcatcaaaac acattacaag cggttaaatt
    13021 tttctgatta tttgcaaata tcagtcaaaa tttaaccgct tgtttgtttt gtgacggaaa
    13081 taatcaaatt ccacttgcac tccgactaaa aattgcttat ctttgttttg tgtttgtact
    13141 gttgtgatag tacagtaatg atcttaagga gagaaaatga aattccataa aaccttatta
    13201 gtgactttgt taagttcact ttctgtagcg gcattagctc aagataaaat tcaaaatgta
    13261 gcaattacag cgattgtgga acaccctgca ttagattcaa ttcgtaaagg tgtgattgaa
    13321 gaattagccc gagaagggtt tgttgatggt aaaaacatta aaatcgacta tcagtctgca
    13381 cagggtagta ctgcaacagc agcacaaatt gcgcgtaaat ttgttgggga taaagcagat
    13441 attattatcc cgatcaccac accttcggca caacctgttg ttgctgcaac acgttctatc
    13501 ccaattgtgt tttcaggcgt gacagacccg gttgctgcaa aattagtaaa atcgtgggag
    13561 ccaagtggca ctaacgtgac ggggatttca gaccacaaag cgatggctcc acaagtgaaa
    13621 ttaattcaaa cattagtacc ggatttgaaa gctgttggtt atgtgtatag tgcaggtgaa
    13681 gttaattctg cgattgtgtt agaagagtta aaacaagagg ctcaaaaaca gggctttact
    13741 atagtgccgg ttgctgttca acgcagtgcc gatattggca ctgctgctcg cagcctaaac
    13801 ggaaaagtgc aggctattta tatttctgaa gataatgcag ttgtttcggc ttatgaagcc
    13861 ttacataaag cggctttaga agcaaaaatt ccggtgattg ctgctgaccg tgatacagta
    13921 caacgtggtg cagtggcagc ttatgcggtt aatcaatatg atattggtgt ggcaaccggt
    13981 aaagttgctg ctcgtgtatt aaaaggggaa aaagcaggta caattccaat ccaagaagtc
    14041 agcaaattag agctttcaat taatactaaa acggcaaaag aattgggcat tactatacca
    14101 gaggtattaa tcaaagaagc taaacaaact ttttagtgta aaaaataaaa atttgtttta
    14161 tttgtcataa tcttgtagag taaaaattca tttcaactca gctaaggaga atattatggg
    14221 atggattgct gcaattattg ttggcgctat aattggttgg atagcttcgg ctgtaatgaa
    14281 aagtgaaggc ggactttgca aaaatattat tattggtatt gtgggttcgt cacttggacg
    14341 ctgggtattt ggtgatgtat taggtattgg ttccgcttat agtgccggag actttaatat
    14401 agtcggtatc ttttttggtg tattaggggc agctcttttg attttcattt tgagaaaatt
    14461 aagcataatt aactaatttc gtatttcaga aaggaagcag ttgttttatt actgcttctt
    14521 ttttgttaaa tatactcttt ttgctcttgc atcagttgtg tgaaaaaatc aattaggatt
    14581 cgcactttag gagagagata acgacggttt ggatagagta agctgatttg tagaggttcc
    14641 tgtgtcaaaa aaggcataat aggaatcaac tctccgtttt ttagctcgtg ttttattaaa
    14701 aactttggaa tgttaatgat gcccaaacca gcttttgcca tttgtactaa cgcataacca
    14761 ttgttactgt aaattttacc ttgtggttta atttgcattt tttgtccttg ttgagaaaat
    14821 tgccattgag gatggtattc atagagtagg cagcctcgtt ccactaatgc ttctaagcct
    14881 ttaggttcgc caaatcgagc taaataatct ggagaagcaa ctaaaaccaa atgggaatct
    14941 gcaatttttt tcgctacaat ggaactatct gcaaggctac caatacgcag caccaaatca
    15001 aagccttctg caatcacatc tacccgacgg tcactaaatt caatatgaag ggctaaatta
    15061 gggtaatctt ccataaattt cccaaggtaa ggggcaatga agcgagagcc aaaatccatt
    15121 ggtacagaca ttgttatttt cccttgtagc gttgagttaa tattacttac gctggcatcg
    15181 gcctctttta gttcatttaa aataggcaag cattgctgat agtagagcaa ccctgcctca
    15241 gttggcgtaa tttttcgagt ggttcgttgt agtaaacgca cattgagatg ttcttctaac
    15301 tgagccacca atttacttgc catgggtaac gaaatttgag cttgttgtgc tgcttgagtg
    15361 aaactttggg tttcaattac tttacaaaat aaactgattg cgtttagttt atccattttc
    15421 tctcttcttt atattgtaat ttgtgttaag gcttgctatc gtaaaaatag tgtataaaaa
    15481 aatcaactta aaaagaaata atttcaaaca atttaaaata attattaaaa attaggtaat
    15541 aaattatggg aaaatcacta gttattgtgg agtctccggc taaggcaaaa aaaattaacc
    15601 aatatcttgg tagtaattat gtggtgaaat cgagtgtggg gcatattcgt gatttaccga
    15661 aaagtggtag tgatgaaaaa acggaaaaag cgaaaccgat ttcaaccaaa gggctgaccg
    15721 ctgccgaaaa agctaaaatc aaagcagaaa aagagcgtgt tgcattggtt aaacgtatgg
    15781 gtatcgaccc ctataatggc tggaaagcta actatcagat tatgccggat aaagagaaag
    15841 tggtttccga gctaaaatcg ttggcaaaga aagcagatca tatctatctg gcaaccgact
    15901 tggatagaga aggggaggcg attgcgtggc atttgcgtga aatcattggt ggtgatgaca
    15961 gccgttttag ccgagtggta tttaatgaaa tcaccaaaga tgcgatcaaa aaggcttttg
    16021 acgatccgca accgctcaat attgaccgtg taaattccca gcaaacccgc cgctttttag
    16081 accgtgtagt gggctttatg gtgtcgccat tattatggaa aaaagtagct cgtggtttat
    16141 cggcagggcg tgtgcaatcg gttgccgtaa aattactggt tgagcgtgag cgtgaaatca
    16201 aggcgttcca aagcgaggag ttttggacta ttcttgccaa tacgcaaatt aatcgtaaaa
    16261 aattaccgct tgaattaact acttataaag gtaaaaaatt ctcggcaagc aatgaggctg
    16321 aagcaaatgt tgcagtgcgt gctttggagc agagcgattt tattgtttct aatattgaag
    16381 ccaaagaaac cagctctcga gctgctgcac catttattac ctcatcgtta caacgtgccg
    16441 ctagcactcg tttaggtttt ggggttaaaa agacgatgat gttagcccaa cggttatatg
    16501 aagcgggtta catcacctat atgcgtactg attcaaccaa ccttagccgt gaagcattag
    16561 caatggctcg aggttatatt caggataatt tcggggcgaa ttatttgccg gaaaaagcaa
    16621 atgtgtatcg cagtaaagat aatgcccaag aagctcacga agccattcgc ccgtcggatg
    16681 tgaatgtcaa aatggcggat ttaaaaggaa tggataaaga tgccgagcgt ttatacgatt
    16741 taatttggcg tcgtttcttg gcgtgtcaaa tgttgcctgc tcgttatgat tctaccgcag
    16801 tcacagtgtc tgccggagac tatgaactca aagcaaacgg gcgtgtactg cgttttgacg
    16861 gctggacgaa agtactgccg gtgcaaggca aaaatccgga agatcaggaa ttaccggcgg
    16921 ttgaactgca tcaaaaatta acgcttgatg aaattgtgcc aagtcagcat tttactaaac
    16981 cgcctgcacg ttttaatgag gcgtctttgg ttgctgagtt agaagagcga aaaattggcc
    17041 gcccttcaac ctatgcttca attatttcga cgattcaaga acgtggctat gttcgcaccg
    17101 aaaacaagcg tttttatgtg gaaaaaatcg gtgaagtagt gacggatcgc ctcaacgaat
    17161 cattcaaaga tttaatgaat tatgatttca ctgccaatat ggaagaggtg ctcgaccaaa
    17221 ttgcagaggg gtctaaaaat tggaaagaag agttgaatac tttctttaaa catttctctg
    17281 aagagttgag ccaagcagaa ttagatgaac ttgaaggcgg aatgaaacca aacagccttg
    17341 tgccaaccga tattgattgc ccgacttgtg gacgaaaaat ggcaattcgc accgcttcca
    17401 caggggtatt tttaggttgc accggctatg ctttaccgcc aaaagagcgt tgcaaaacga
    17461 caatgaattt aattccagag gcggaatttt tcaatgtgtt agattcggat tctgaaacca
    17521 aagccctaat ggctcgcaag cgttgcccga aatgcgattc ggcaatggat agttatgtga
    17581 ttgatgctga acgtaaatta cacgtttgtg gtaataatcc aaattgtgat ggtcatatta
    17641 ttgagcaagg ttccttcaaa attaaaggct atgacggacc tgtagtggaa tgcgataaat
    17701 gcggttcaga tatgcactta aaactgggtc gtttcggcaa atatatgggc tgcacaagct
    17761 gcgataacac ccgtaaaatt ctgaaaaacg gggaagttgc tccgccaaaa gaagatccta
    17821 ttgcttttcc tgaattaaaa tgtgaaaaag ccgatgccta ttttgtatta agagacggag
    17881 caagtggggt gtttatgtca gctcataact tcccgaaagt gcgtgaaagc cgtgcaccaa
    17941 aagtggtaga gttagctcaa tatcgtgaac gtttgccgga gaaattgcag tatcttgccg
    18001 atgctccgca gcaagatccg gaaggaaacg aggcaattat ccgttttagt cgtaaagaga
    18061 aacgccaata tgtgacttct gagaaaaacg gcaaagccac caaatggatt gttgattatc
    18121 tagacggtaa atgggttgag cgtaagaaat aaagcttaaa agacaagcgg taaaattttc
    18181 taaaaatttt accgcttgct tttagatgtt ctgagcgagt agttcatcaa ttgctttact
    18241 taatttattg cgatcgtgtc ggtaataaac gtcattcgca gataagtttt ttcgcaagat
    18301 ttgaatatgt tcgggaagtt cagaaccggc atcatcagtc gtaattaccg cattaattct
    18361 agcctgtccg atacagttct ccatccattc aattcgctga ttaagtgata gttgcccagc
    18421 tgggccatgt tcttgtccga tattgtcaat aaatactact cgggctttgc tttgagcaat
    18481 agagtttgct atgcctgcca ccagcaaatt cggcataata ctggtaaaaa agctacctgg
    18541 gcctagcagt attaactcag cactttgaat agctgaaatg gcttctggtg tagcaacaac
    18601 catagtatct aacgctaaat gttgtggtgt ttctgctaaa gaatcaattt gcacttcacc
    18661 aaatactgat tcgcctgaat gcaactgtgc aattaaatgc accggtattt cagacattgg
    18721 gataagttgc gatcttacgt gcaataattc tcgcaccaaa ttaatccctt ctagcggtcg
    18781 gatttgcata ttttcaaggg cggtgagaat taaattgcct agattatgtc cagcgagttc
    18841 gcctgtgcca gcaaaacgat actcaaacaa ccgagaagct atcgttggtt taacgataat
    18901 ttgatttaaa cagttgcgta aatctcccca agcaatcacc ccttgttgtg aacgtattct
    18961 accggttgag cctccattat cggtagtggc aacaatgccg gtaagccgtt cctttaaaaa
    19021 agagagcgcg gagagcaatc gacctaagcc gtggccccca cctagtgcaa caactgcatt
    19081 gagttggttt aaatagtgat gtcgggtagg tttaaaagga ataatatctg tattttccat
    19141 cttgggattt cgtttatttt tctaaaataa tggcatctga ctgggctgaa ggcaatgctt
    19201 gtaatacagc tttaaccaaa gtcgctaaag gaatcgcaaa aaacactccc caaaagcccc
    19261 ataaaccacc aaagatgagt acggcaataa taattgtcag agggtgtaga tttactgctt
    19321 cagaaaataa aaagggtacg agtaaatttc cgtctagcaa ctgactaata ataaatgcga
    19381 gcattaaata gtagaaatcc ggcgataacc cgaactggaa tagagcaatt aacattaccg
    19441 gaatgctgac taaaaccgca ccgatgtagg gaactaacac tgaaatccct accgctacag
    19501 aaagtagtaa cggatagcgt aaatcaaaaa agaggaaaat aatataagtg acaaccccaa
    19561 caattagaat ttctaaaaat ttacctcgaa tatagttggc aatttgttgt tgcatttcaa
    19621 accatactcg tgttgcaagt cgacggtttt gcggtaatac tttactaaaa gaacgcatta
    19681 aaacgatttt atctttcagt aagaaaaaga ccatgagtgg gactaagaag gtgtaaatgc
    19741 ctaagccaac taagctgatg atagagttaa tcgagagtgt tagaagtgat tctcccatac
    19801 tcaaaatatt acttttagcg gtattcacaa tggaatctag ggtcgcataa tctactaatt
    19861 cagggtaatg ctccggtagg gcttgtaacc aagcattgag cagattaaac atcgaaggta
    19921 aatcttgaat aaaggtaact gcttgattcc aaaggctggg tagtagtact acgcctaaaa
    19981 aagataataa agcgatgaaa cctcctagta ctagaatgac actcaaagtt cgaggtaatt
    20041 tgagtttgct cgacaaaaaa cggattggcc attccaataa ataggcaaac acaagtgcaa
    20101 ccagaagggg cataagcaga tcgctaaaaa aatagataat accgaaaccg atcaatagaa
    20161 tactaaacag cacaactatt tgcgggtcgg taaatttttt tcgataccaa tcttgcaaca
    20221 tttgaaacat atggattgcc tttaaattat gcgatgaaaa ttatttctgg ctacagactg
    20281 caatgaaccc tagctttttg tccgggtcat taaatagttt gtacatttta ttaaaggttt
    20341 cgcgattttc tggttttaat gcattgccga taattttcat ggcgcctaaa acaccttcat
    20401 catgaatcag acctttaggg gaaagtagag acatttctcc ggaaaaggta tcaacattac
    20461 ggaaaccaca acgttggaat aatgatttcc agtctgcttt agcaagtgga gagacagtga
    20521 tattgattgc atcacgcaac tcggctaata aagtatcgga gtctttatct tggataacaa
    20581 tatcgtgcgt taataaaaag ccatttggtt ttaatacacg aaaatattca cgtattgcct
    20641 tttctttcgc ttctagagga agcattgtca gcatggcttc attaattaca atatcaaaac
    20701 tttcgtcgtc aaatggcagt tttgttgcgt tggcgcgctg tacttgaatt aaatgctcaa
    20761 catggttttc tttgatattt ttacgtgctt tttcaagcgc atcttcgtct aaatcaatac
    20821 caacaatttg gcattcaaat tgttgagcta attggattgc agtagtcccc atgttacagg
    20881 caacttcgag cactttttta tttttatcaa aatccccgtt tgcaattaac caatcagttg
    20941 ctaatttccc cccggggcgt aaacgagttt tgcctaaacg agctaaaaaa tgatgaccaa
    21001 cttcttcttt tttcataaaa acctctggat ttgcaaaata cgttaaatat atgaccgctt
    21061 gtattgtgat ctatgttcgt tattatactc aattttttca ttttcttata tacaacatca
    21121 acagattttg ccagaataca acctcatttt gatatgagga aaatagaatg agtaagcaaa
    21181 agaatgatta cctccaccag cgaggtcaaa ttaaagaaag tgcagtaaaa gcattagtga
    21241 ctgatccact ttttagacaa cgtgtagaaa gaaatcgtaa agggaaaggg agctatcgca
    21301 gacaagaaaa acacaaaaaa actatctatg ggcaaaaaga aaccccattt aaaaatattc
    21361 ggttagagtc tttttaaatg gggttttatt tgtagcttat tgtagtttta taagcctgat
    21421 aaacactatg gtttactgaa ataggccaac aacggttctg gattttgaat ataagaagaa
    21481 agttctttat gctctgggtg acccatatag gaaatttgcc caagtaaagg cgcattaatt
    21541 ttttgtgtca gtagttcaat taattcgtga taatgccgta gccctggatt tactctgttt
    21601 gcgacccaac ctactaattt tacaccacgc tgcaaaattt cattcgcagt aagtagtgca
    21661 tggttaacac aaccttcctt aattcccacc actaaaacaa ccggcatatt gttttgcatt
    21721 acccaatcag caaaatagta atccttgtta ataggagtta gccagccata ggttccttct
    21781 acgacaacat ttggataggc attttctagt cgttttaaat ctgtgtttaa tttttccagt
    21841 tgaatatgat gaactgcatc taaagctgca aatacagggg tactggaatg aataaaagta
    21901 tagctattaa tatcacgata gctaacatta gttggacagc tatctagtat ggttaatacg
    21961 tctgaattat cttcagtagc ataatcatat tgagtaggtt ctgtgggtaa tgaatcatca
    22021 ccgccacaag caatgggttt atagccaatt acaggaaaac tatgttttgt aagtgtctgt
    22081 atgatggctc gggtaaccac agttttccct acgttggtgt ctgttccggt aataaataat
    22141 gagggcataa atggctcctt tcgaaaatat ggctggtagt ttaaccaaaa atagatcaat
    22201 ttattctgtc tttgatcaaa tttccgtcat aaattccttg ttttattgct gaacaggcaa
    22261 ttaatggact attccaatcg tattggctgg taactaaatc gatttttagg tttgtttgta
    22321 acaaattttt atgcaatttt tctgaaattt gcgtaaataa cggctctttt attttgatca
    22381 atggcgagtt tagcataatt ttttcactag agaatatatt aactaaattc attaatgcat
    22441 aagctaaatt atcggtaata tgcgataaaa tagctaatgc aagcggttga ttttcatcaa
    22501 ttttttgaca aagccagctg attttctgtt cctgactttt taaattatta ggcaaataac
    22561 gatcaatgag tctcacaata gctgggaacg tcacctgatt gactaattta tagcgatgaa
    22621 tttcatctag ttcagggaat atttcatcac tgagatggct aaatctaggc ataagcatat
    22681 tatcaacatt catctttgag tgtttagaca gtaaactacc actaagcaat acacttagat
    22741 tcacagtatc atctaattgt agaaaaatag cattatcttg gttaattaat gagccaaccg
    22801 tagattctgc aagcaaccac agctgaaaat gttcacttaa taaaatagga caatgaaaca
    22861 gtggagagag tttagatgta atgttacaga atatattttt gttccccaat tgagtaatac
    22921 tgtctttttc tgcattaatt ttaccgatca cactaataga tacagccagg atctgactag
    22981 tattgacaca atatagttgg cggaactttg taataaagtt aagaataaaa tcatttagcc
    23041 taggataatt ttctgctgag attgtataat cttgcttata aatttctgca ccattgagtt
    23101 tacaaagtga aatttcaatt ttatgagatg aaacagtaac acaaagtagt tgccaaaaaa
    23161 aattagaaac agctaatcca acggaggggc gacctctgga taaagtagtc tgaaccgtac
    23221 gttctaaaat gaagtggtta tctattagta ttttagtcag atttgttact gaagctgggg
    23281 ctaaccccga tagtttagct aaatctgttc ttgaaatgag ttcaaattgc tcaattaaat
    23341 ggtatatttt acccaaatga agggctttgt tgtcagaaaa catttaaaat cc
//
LOCUS       DANLUT010000014        22837 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLUT010000014 DANLUT010000000
VERSION     DANLUT010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22837
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(191..1342)
                     /gene="fucO"
                     /locus_tag="PXB38_000527"
     CDS             complement(191..1342)
                     /gene="fucO"
                     /locus_tag="PXB38_000527"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL5352885.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAAQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            complement(1471..1722)
                     /locus_tag="PXB38_000528"
     CDS             complement(1471..1722)
                     /locus_tag="PXB38_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5352886.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            complement(1778..2725)
                     /locus_tag="PXB38_000529"
     CDS             complement(1778..2725)
                     /locus_tag="PXB38_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5352887.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            complement(2749..3747)
                     /locus_tag="PXB38_000530"
     CDS             complement(2749..3747)
                     /locus_tag="PXB38_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5352888.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            complement(3744..5273)
                     /locus_tag="PXB38_000531"
     CDS             complement(3744..5273)
                     /locus_tag="PXB38_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5352889.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            complement(5335..5988)
                     /locus_tag="PXB38_000532"
     CDS             complement(5335..5988)
                     /locus_tag="PXB38_000532"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL5352890.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            complement(6048..6479)
                     /gene="fucU"
                     /locus_tag="PXB38_000533"
     CDS             complement(6048..6479)
                     /gene="fucU"
                     /locus_tag="PXB38_000533"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL5352891.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            complement(6554..7987)
                     /gene="fucK"
                     /locus_tag="PXB38_000534"
     CDS             complement(6554..7987)
                     /gene="fucK"
                     /locus_tag="PXB38_000534"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL5352892.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVENPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYRLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            complement(8181..9947)
                     /gene="fucI"
                     /locus_tag="PXB38_000535"
     CDS             complement(8181..9947)
                     /gene="fucI"
                     /locus_tag="PXB38_000535"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL5352893.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLRFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDQVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGGLSSQFLT
                     KGGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRTNETWPTTWFVPRLTG
                     KGAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCMHNVEDKDVFRPSAWN
                     GFGQDKEGQDYRACANFGPLYK"
     gene            complement(10143..10889)
                     /locus_tag="PXB38_000536"
     CDS             complement(10143..10889)
                     /locus_tag="PXB38_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5352894.1"
                     /translation="MQQRQDKIIAYLAQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            11169..13265
                     /locus_tag="PXB38_000537"
     CDS             11169..13265
                     /locus_tag="PXB38_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5352895.1"
                     /translation="MKNFKLLPVSAAVLSVLAANAFAETVATDAAVLDTVTVTDNQGL
                     KVQTNVVTTQKKEESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVGTVTVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKSSFLAKLGATLGDHRFVLSHSNERNEGERLVREEFDAAPVGTKGSRVTL
                     DRQAPANRRMTVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETRNGYAGGVDYA
                     TKTKIVTHGANVNFDSALHENVLLKYGVNYRHQETKPYAKFSHQLVNQEKTDTGVYLE
                     AITAPVDKVTLTTGVRYDHFKFKAMDGKKRSEGAFNPSVGIIYEPIQHLSFSASHNYA
                     TRSPRMHDALLSHGRRGVVSIANNTKAEQARSTEIGFNYNDGTFSFDGSYFWQNIKDA
                     LGTSTGRNNHLCPELTPNTNNKECYSEIINAGTIKNRGYELNAGYHNNGFTARVGVAH
                     SKPRFQGDRLSTNPEYASAIGRTWTASLSYRFDQPNLEVGVHHRIIEKVKAEDNYFVM
                     NNNGIPQFGRGGPTGKDGYNVTDITLNWKPLNDDSVNVNFAVDNVANKKYNAHGQRGQ
                     LSARGREFRAGVNYTF"
     gene            complement(13381..13668)
                     /locus_tag="PXB38_000538"
     CDS             complement(13381..13668)
                     /locus_tag="PXB38_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5352896.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYSIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(13661..13840)
                     /locus_tag="PXB38_000539"
     CDS             complement(13661..13840)
                     /locus_tag="PXB38_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352897.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            14102..18001
                     /gene="purL"
                     /locus_tag="PXB38_000540"
                     /gene_synonym="purI"
     CDS             14102..18001
                     /gene="purL"
                     /locus_tag="PXB38_000540"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL5352898.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGREALEEANVNLGLALAEDEIDYLVENFTALGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPNFEQPWENPLSKPSRIASALDIMIEGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEVRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKENLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGERGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADTHFNNKPIDLPMNVLLGKTPKMQRDASSKTVKN
                     PPLVTADIDPKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPALGITIPVGKDSMSMRTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQIGDK
                     PADVVNVERLKGFFNAIQILVAQEKLLAYHDKSDGGLITTLAEMAFAGNCKIRAEIDR
                     LGTDDLGVLFNEELGAVIQVKTSDLESVQAVLKAENLANLTYDIGSVAQGDGFEITRN
                     GEMVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFEAKKDPNNKGLSAFLTYDVNE
                     DIALPFINKGTKPTIAILREQGVNSHYEMAAAFDRAGFNAIDLHMSDLISGRRNLNDF
                     NAMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSQFFVNPNTLALGVCNGCQMVSN
                     LAEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGIAGSHMPIAVSHGEGQV
                     EFKRSEQLENLQKQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMP
                     HPERVFRAVSNSWCPEDWTEDGAWMRLFRNARVALKY"
     gene            18361..18543
                     /locus_tag="PXB38_000541"
                     /pseudo
     CDS             18361..18543
                     /locus_tag="PXB38_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            18993..19370
                     /locus_tag="PXB38_000542"
     CDS             18993..19370
                     /locus_tag="PXB38_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5352899.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAIGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            20100..20876
                     /locus_tag="PXB38_000543"
     CDS             20100..20876
                     /locus_tag="PXB38_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5352900.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            21480..21974
                     /locus_tag="PXB38_000544"
     CDS             21480..21974
                     /locus_tag="PXB38_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5352901.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
     gene            22229..22468
                     /locus_tag="PXB38_000545"
                     /pseudo
     CDS             22229..22468
                     /locus_tag="PXB38_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
     gene            complement(22667..>22837)
                     /locus_tag="PXB38_000546"
     CDS             complement(22667..>22837)
                     /locus_tag="PXB38_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5352902.1"
                     /translation="GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQI
                     FLLKQLVKGGLG"
BASE COUNT         6603 a         4722 c         4753 g         6759 t
ORIGIN      
        1 ttttattttt gttaatttat agatataaat gtgaacaaaa tcacatttct tggcgataaa
       61 aaagcaacga aaatgcccga tttttccata aatatgagaa atcgggcatt atgactatca
      121 gtattttttt aacagaaatt gcaaattttt attaaaaaat caccgcttgt ctatttaaca
      181 aagatagaac ttagtatgcg atccgatata cctccaacag ctcctcagcc gtacaatctc
      241 tcgggttgcc accggtgcag acatcattaa aggcatcgac cgataatgcc gctaaatcgg
      301 cttctttaac gccgatttga tgcagttttg gcggaatgcc gacatcttgt gaaagctgtt
      361 gtgcggcagc aatggcggcg ttgcggtact cttcttggct catttcatct acgcctttta
      421 cccccattgc tcgggcaatt tcacggtatt tttcgccggt gtaattttta ttaaattcca
      481 tcacatacgg cagtaatact gcgttggcaa tgccgtgtgg ggtgtcgtaa taggcagaaa
      541 gcgggtgtgc catactgtga accgcgccaa gcccaacgtt ggagaagccc attccagcca
      601 catattgtcc caatgccatt gcctcgacat ctttcggatt tttctccact gcaccacgca
      661 atgaacggcc gatcagctca atcgctttaa ggtgtagagc atcggttaat tcccacgccg
      721 ctttggtaat gtagccttca atggcgtggg tgagagcgtc cataccggtt gcggcagcca
      781 agcttttcgg catagattcc atcatatctg gatcgactaa cgccactgcc ggcacatcgt
      841 gaacgtccac gcacacaaat ttgcgttttt tcgcttcatc ggtaatgaca tagttaatcg
      901 tgacttctgc ggctgtacct gcggtagttg gaatggcgat aatcggcaca catttttggt
      961 gggttggggc gacaccttcc aatgaaagta catcgctaaa ctcagggtta ttgatgataa
     1021 taccaatcgc tttggcacta tcaatcggtg agccgccacc aatcgcaatt aaataatcgg
     1081 cactggaggc tttgaatttt gcgacccccg ctttgatcac atcgactgcc gggttggctt
     1141 tgacctcatc gaaaatctca taaggcaagc ctgcggcatc aagcaaggcg gtgacttttt
     1201 gggcaacgtt aaatttgatc aggtctttgt ctgttaccac aagggctttt ttgaaacttc
     1261 ggctggtcac ttcgtgaaca atattttgga ttgctccttt gccgtggtaa ctggtttcat
     1321 tgaggataag acgatttgcc atactatttt ccttcttaaa agttaaacaa ttcgattaac
     1381 ttgcaagcgg tcaaattacg tcattttttt gcaaattttg ataaaaattt caccgcttgt
     1441 tgcgattctt ttgttgtgag tgtgcttagg ctaaatattc aaaatacgtt tgatttcatc
     1501 acggtaggct tcggcatcgc taccaaaaat agattgaata actgagcctg aggtcacaac
     1561 gcctaacgca ccgacagatt taattttatc ccattccaca atgtcggtat ttttcacctc
     1621 cacacgtagg cgggtaatac aggcgtaaac atcgacaata ttttctcgac cgccaagtgc
     1681 ggcaatcacc actaaggctt tatcggtaag ggtatttgac atattggctt cctttcggct
     1741 gaaagggtgg gcaaccccac cccgtttaac ttgaatgtta gtaaagaaca cctttcgctt
     1801 cttcgctatc aatgttttct ttcgtgacat aaaccacccc ggtatcaatc actttttcga
     1861 ctttctcgcc tttaatcagc ttgccgatgg tgtccacgcc tttatagccc atttggtagg
     1921 aagattgcac cacgatgccg tctagtgttc cgtcacgcac gaagttttgt aggtcggagt
     1981 ttccatcaaa gcccaccgct acaattttgc cggcaaagcc tttttgtttc accgctcgtg
     2041 ccattcctac cgcagtcggt tcgttcgccc cgaagatcgc tgcaagatca gggttagaac
     2101 ctaatacgtc ttcggtttgg tttaacgctt tggtcatatc cgaatcggag tagtacgggc
     2161 cgaccagttt gtaatcggct tttgctttga tttcgtcaat aaaaccaccg gtacgctcaa
     2221 tcgctgatgc tgccccttgg gtaaagctca tcactgccac tttgccgcct ttgactttgg
     2281 caagcagttt ttccgctgct aatttacctg ctgcacggtt gtcggtggca aggaaagatt
     2341 ggtagtattt gccgtcactg ttgatgccgg aatcgataag caccaccgga atgccactct
     2401 cataagcttt tttcaccgcc ggcactaatg ctaccgggtc tgaggcagcc agtacgatgc
     2461 ctgccacgcc acggtttacg gcgttgtcca ccatattcac ttgggcgtca atcgctgttt
     2521 cggcttccgg cccttggaag gtgactttgt attgtcctcc aatatctttg ccggcagttt
     2581 cagccccttt acgcacgttt tgccagaagg tagagttggc agatttcaca atcacagcga
     2641 tttcatcaga ttttgccatt gcactgcctg caaataaggt cgataaacca aagagggtcg
     2701 cagtaaataa tgctgatttt ttcattttaa ttctccttta agagtggatt attttttacc
     2761 ggcttttttg gattggcgga gctggtcgag agagaccgcc acgataatca caagcccgat
     2821 gacaatcatt tgaacaaatg aagaaacgcc attcatattc aaaccattac ggagtacccc
     2881 gataatgaat gacccgatga gtgtgccggg gatagtaccc acaccgccca taagcgatgt
     2941 gccgcccacc acagcactgg caatcgcatc cagctcgtaa gagaccccac cgtttggctg
     3001 ggcggtgacg aggcgggagg caaggataac gccagttaaa ccagagagta agccactggc
     3061 aacataggca tagattttga caatattggt tttaatgccg gataagcgtg cggcttcttc
     3121 gttagaacca attgcgtaaa gatagcgtcc gactttcagt ttagagagag cgaaagtgaa
     3181 tagtacggta ataaagatca taataatcac agggtaagga atacctgcaa ataccacttt
     3241 cggcaagccg tttgcccctt cttccacaat tttaaataat gctccgttac cgagattggc
     3301 aaaggattca ggcattccgg aaactggtgc ggcattggta acatacaatg ctaaaccacg
     3361 ggcaaccatc atcataccga gggtagcaat aaacggaggc aatttcattc tggtgactaa
     3421 aatgccgttg attaagccac aaataccgcc gaccaaaatc cctaaaatca ttcctagtgg
     3481 tacgggtaca ccggcattta caatcattgc agctgccaca ccggagagtg caactactga
     3541 accggtactt aaatcaattc caccggttaa gatcacacag gttgccccaa taccaattaa
     3601 cgcaatggta gaggtttgta gccctactgt cataatgtta ttggaggtaa agaagtattc
     3661 attggttacg ctgaaaaaga tgattaatag tactaagcca gccaatgcag ccatttttct
     3721 taacatttct ttttgttttt cattcatttt tccaccccat attcacgagc aaacatattt
     3781 ttaacaccag ttgcataatg cataatttct tcttggttgg tttttttagt ctcgagcata
     3841 cctgtcattc taccttcacg cattacaatg atgcggtcgg aaactcccaa gacttcaggc
     3901 aattcggaag agatcacgat aacacccacg ccattggcag caagctcatc gagcagttga
     3961 tagatagcat attttgctcc gacatcaatt ccccgagtcg gctcatcaaa aatcatcact
     4021 tttgcttcac ggaataacca tttaccaatt accacttttt gttggttacc accacttaag
     4081 ttttgaactt tctgctcaat cgttggggtt ttgatttcca ttttgtcgat gaaagttttt
     4141 gaggcttttt cttcttcatc gtaagaaatc acacctattt gattggcaac tttatccata
     4201 gatgccatcg tgatattctc acgaatcgac attcttactg caacaccatt gagcttacgg
     4261 tcttccgaca aataggctat accggcttta attgcatcac tcggatcttt aatgctgact
     4321 ttgttctcgt gcacaaaaat ctcaccgcta tcaagtgggt ctgctccgaa gatggctcga
     4381 gccagttcag tacgttttgc tccaaccaag ccggtaatgc ccagaatttc tcctttgcgt
     4441 aagtcaaagt tcaatggttc aaacactccc ttacgttcag cattcataat cgagaggata
     4501 atgtcgtttg tcaccacagc ggtttttggt gggaaatggt tatccaatga acgcccaacc
     4561 attttggtaa tgatctcatc catcgtgatt tcattgaatt tatggttaga tacataggtg
     4621 ccatcacgga aaatcgtaat atggttacag atacgtttta attcttccat tcggtgagaa
     4681 atatagacaa tgctcacccc tttggcacgc agtctatcga ccaattcaaa taatttatcg
     4741 atctcttttt cggtaagagc ggaggtcggc tcgtccataa tcagtacttc cacatcaaat
     4801 gaaagggctt tggcaatttc taccatctgt tgtttggcta ccgacaacat tctcacttca
     4861 tcgtttggat caacatcaat ctcaaagaaa ttcagcaatt tagccgattc ttccaccatt
     4921 ttgtctttat ccactaaacc gtgtttgagt ggctcacggg cgaagaaaat attctctgcc
     4981 accgttaaat ggggaatgag gttcagttct tggaaaatca tactaatgcc cgctttttgt
     5041 gcctctaata ccgactcaaa gcgaacaggc tgacctttat atatgatttc accttcatcg
     5101 gcttgatata cgcccagcaa gcatttcatc aaggtggatt tacctgcacc gttttcgccc
     5161 attaatgcgt gaacttcgcc cttacgcagc gtaagctcaa caccttttaa cgcattgacc
     5221 cccgcaaagg atttactgat gtttttcatc gtgagtatta cttcattttg catactgcac
     5281 tccgtttgta aaaattttaa gaaatatcac cgcttgtatg ttatttatgg caggctattg
     5341 ttcgctttcc acccaagaac cataggactt aaattttccg agtacgatat ccatttgttc
     5401 tttgtttagc gttgggatag gttttcctgt agcgagcagt ttcaaatacc attctgcgat
     5461 cacttccacc tcgtgggcga tgccgagggc tttttcgagg gttttatctg cggtgattaa
     5521 gccgtggtga gcgagtaaaa ttgctttgct gtgtttaatg ccttcacgta catagtcggc
     5581 taattggtga gtgccgaacg gggcataagg tacacaagga atgtgattag tgccggtgca
     5641 ggcgatcata tagtgaatgg cagggatagg ttcacctaaa atagacactg cggcacagtt
     5701 tttagcgtgg ttgtgaacta ccgcatttaa ttcagggcga gcctcataaa ccgctaaatg
     5761 gaactgccac tcacttgaag ggagttttcc ctcttcgtgt ttgccgttgc catcaacaaa
     5821 gacgatagaa tcttcggtca tttgttcata aggtgtacct gttggcgtaa tgagcatacc
     5881 gtctttataa cgtacgctca cattgcctgc tgtaccttga tttaacccaa ttcgggtcat
     5941 ttcaagacaa gtatcaatga tttgtctcgc cagtattttt ctgtccattg ttgaactcct
     6001 tttaatttta tatttgtaaa aaattctgct tttttaaccg cttgtaatta aaccggtgtt
     6061 acgccttttt tgataataat gttgccgtat ttggctaact cgcctgtaat gacaacggca
     6121 taagcgtttt tggctctatc atagaaagcg aagcgttcta cacgctctat tttcggggct
     6181 gttccgttta cttttttaat tgcattgagg taacgctctt caacgcttgg atcgagcgtg
     6241 tcgcctttta ctgcttgcat cattgcaagt ggggcttcaa cgtattggtc aaattcaaac
     6301 agagcagaaa tgccttctaa taaggtggca acacttaagc catctgcacg aatgacgttt
     6361 tgatgaatag agtgagcagg gaagtgtgca tcagaaagca ctaattcatc gccgtgcccc
     6421 atttcggcta agacttttaa taaatctgga gaaattgccg ggtgaatacc ttttaacatt
     6481 ttgaactcct tttttaccct ctctctgatt tgaggttctg aatgaacctc aaatcagaga
     6541 gaggggagaa actttattta taaaattgac tatttgacga tggctcaacc cgtttcacat
     6601 ttggcttcat tgcctgttga gccgcatttg gattttcaaa tacaccagca cctgtaaaag
     6661 taaacattgc cgcgcctaat acggtacttt cagggaaatc cactacatca atcggtctat
     6721 ttaagacatc ggctcgaatt tgattccata aagcgttttt agaaccacct cccacacaaa
     6781 tcaaactctc agcattaaaa tgaccgactt cttgtaatac atctaaccct tcttttagac
     6841 gatgagccat atattccaag cctgcacggt aaatttcgcc acgagtgatg tgcatagata
     6901 agccgataat tgaacctgtt ttagctgttg tgccatcaaa attgccgact aatttcacac
     6961 cgtttgagcc agcaggcact tctgccgctt cttcaatcat tgtgcggtag taatgttcag
     7021 tattggctat atcagagaag aaacgtttgc caaaccactc catcacacct gaagctaccc
     7081 actgcacacc tgggttgaaa taaccagatt ggctatcaaa ctcaatggtt aagccgtttt
     7141 gaacgaattg ccattgtggt tttgcttttg gggtacgaac cattaaaatt tcccaagtgc
     7201 ctgaacttaa cacaggttgg ttatagccag ctcctgagcc aaaaatggca aattgagtat
     7261 cgtgtccgca agaaattact ggaatttgac cgcttaaacc taactcttgg gaaatttctc
     7321 cttttaatgt tcccacaact tctcctgcac ttttcattgg aggaaaatgg ttttcggtta
     7381 agcctaataa atctaaaact gttttatccc acgaatcgtt ttcgatgttt gtcatcattg
     7441 acgttcccgc cattgtgcgg tcggttgttt gcacgcctgt aagacggtaa gtcaaaatag
     7501 atgagatgaa taagaaactc tcagcttgtt gataaatttc tggtttgttc tcttttaacc
     7561 acaataattt gaataaggtg ttgaaactat aatgtccaac gccattacgt tgatataacg
     7621 cctcaacatc aagataattg gcaaggtttt ccataatcgg tagggttctc gggcatttcc
     7681 aagaaatgat cggataaagc tgcttgccgt ttttgtcaaa taatgcaccg tccacgccaa
     7741 aggtggttac tgaaatccca acaatctctt gtcgttgttg ttctgaaagt tgagaaagcg
     7801 tctgtttggc acaggtcatt aatttcgacc agatctcttc aatatcccaa atatgaaatt
     7861 ctgggttttc cacatctggt tgtgtgttat tcggtagatg atgggctgcc acaatttcac
     7921 ccgcttgatt aatcgcaatc gtacggaggt tggtggcacc acagtcgaaa ataagagaaa
     7981 ttggcattgt tatctccttt acttatccta atatctccct tttagagaga tagattaaat
     8041 tgcgtttagc aatttaatca gagagaggga tttgtaaatt ttgagagaaa agcgaccgct
     8101 tgtagccctc tccctgccat tcaattctga acgaattgct tggctgtccc tctcccacaa
     8161 ggggagaggg tgattgtgta ttatttatat aatggtccga agttagcaca agcacggtag
     8221 tcttgacctt ctttgtcttg accgaaaccg ttccacgcac ttgggcggaa tacgtcttta
     8281 tcttccacat tgtgcataca aaccggaatg cggagcattg aggcgagggt aattaagtct
     8341 gccccaacgt gtccgaaggt tgccacacag tggtttgcac cccagttcgc cattacgcta
     8401 tacacatcgg taaatgcgcc ttttccggtt aagcgaggta cgaaccaagt ggtcggccag
     8461 gtttcattgg tgcgtttgtt taaaatgtcg tgtacatttt ccggcaagtc gatagaccaa
     8521 ccttcggcaa tttgtaaaac cggcccgata cctttgatca ggttgatacg gtgcatcgta
     8581 aacggcattc cacctttggt taagaattgg gaagataaac caccaccacg gaaatattcg
     8641 tgaactgccg gacaccaaca ggtgttttct aaacaacgtt taccgtcttc ttcagtcact
     8701 tcccaagccg gtttaatagt tggtttgcct gctctatcgg tatgctgacc tgttccgtct
     8761 aacgccgcag agccggagtt gattaagtgg ataaaaccgc tttccggacg ccagccggtg
     8821 acacgttcta cctggtcttc gctccagtat gtccgcacat cggcaaagat ttgtgcctga
     8881 ccggttaata agttaccgaa caacatattc acgccattta agctgtcgtt ttcagttgcc
     8941 ataatgtatg gtgcgcgaac gccgttccag tcataggtcg aattcaaggt agcttccata
     9001 aaatcgccgt ttggcaaatg gtctgtccat tggcgttgcc cttggaaacc ggcagcaatc
     9061 gcattatgcc ctaaggcttc ttcactatag cctagctctg ctaagcgagg attacccacc
     9121 attaaatcac gggcaataat ggtcattttc accacgtctt cccagagttt ttcacgctct
     9181 tccgggctgc gttgattttc cggtgcgttg acatcaatac cttctttgca ataggttttc
     9241 acccagctca ttgctaattt aaattcttcg gcatcgtaaa tatggcgatc taaacggcgt
     9301 ttaatttcgg tcatatccac atattcgtta cgcataccca aatattcttg gaagaattgt
     9361 tggtttacga tagaaccggc aatacccatt gaaacagagc cgatagataa atatgatttt
     9421 cctcgtaagg ttgccactgc taagccggca cgggcaaagc ggagtaattt ttcacgcaca
     9481 tcgtctggaa tagattgatc gtcagcttct tgtacttctg tgccataaat ggagaatgcc
     9541 ggtaaaccta attggctatg acctgctaaa gcagcagcta aataaactgc acctgggcgt
     9601 tctgttccgt taaagcccca aatggctttc ggcatatgtg ggtccatatc aatggtttca
     9661 gaaccgtagc accagcaagg ggttacggta atcaccgctc cgacattttc acgtttgaat
     9721 ttttctgcac aagccgcagc ttcggcaaca ccaccgatgg tggaatcagc aatcacacat
     9781 tcaacgaaat caccatttgg gtggcggact tcagattgaa ttaattgtgc aacggctttt
     9841 gccatattca ttgtttgatc ttcaagtgat tcacgcactc ctaaacggcg accgtcaatg
     9901 gttgggcgga taccaatttt tacaggggta gatttcaacg ttgtcataaa tagttctccc
     9961 gattggttaa aaaaatttgc gattgaattt attatgcata cgcaatatga gttatgaaga
    10021 aaaatgcgaa tttagtttaa attttgtgag tgcgatcaca aaaaatgggg gattttggta
    10081 aaaatgagtg aaaaaagaat gcccgatttg ttttatttct gaataaaatc gggcagaaat
    10141 cactaaataa tgatttcaat ttgatgtgct aagcaataat ttttgagaaa gtccggtggg
    10201 ggttggttga taaataattt atcaatgcaa gataaatctt cgatacgaaa caagtcttta
    10261 cgctcaaatt tactgtgatc ggctaataaa aaaacctgtt tactgttcgc aattaattta
    10321 cgtttaaggg aaatattaat ttcatttgat tcccaaatcg ccccatcggc aatgcctgta
    10381 caagaaagaa tggcaagatc aatttttaaa cgggtcagta actgctcgga taatggacca
    10441 tagaaggcat cgtatttttc ggaataaata ccaccggtgg caatcgtttt aatgtgcggt
    10501 ttgtgtgaaa ggctgtagat aatccgcatt gaactgctga caacggtgca aggaatattt
    10561 ggaatacgct gtgccacatt ccaagaggtt gagctggcat ctaaagcaat caccgattct
    10621 ggttgtaaat attccaacac attttctgcg atactgcgtt tcgcctcact gttcagccgt
    10681 tgtcgggtgg taaatgagcg accaatatct cgctttttat ggctcacagc tccaccgtga
    10741 gtgcgatgta ataatccatc tttatctagc ttatttaaat ctcggcggat agtttcaatc
    10801 gaaaccccac aatgttccgc caattcttga acgttagctt catcaaattg ggcgagataa
    10861 gcgatgattt tatcttgtcg ttgctgcata aatagtcctt agtaaattta gacataaatt
    10921 taactgcttg taggtcggtc tgtcgagtgg ataaatcgga tttttagagc gtgatcacat
    10981 ttgttttaca agcggtcata tttagagagt tttttacaaa atctacctta ttttgtgaaa
    11041 tttaatttca gactaattga caaccaattt taactctgta aaattcgcct tgttttgatg
    11101 ttgagaattg tttttaatat caaaattttg gtaatcctct taaataattt acctaaggaa
    11161 ataaacagat gaaaaacttc aaattacttc cggtttctgc tgcggtatta agcgtgcttg
    11221 cagcgaacgc atttgctgaa acagtagcaa cggatgcagc ggttttagat acggttacag
    11281 taactgacaa ccaaggttta aaagtacaaa ccaatgtagt tacaactcag aaaaaagaag
    11341 aaagtactca aacagactta cgtggtttat taaaagatga gccggcaatt agcttaggtg
    11401 gtggtaacgg tacatcacaa tatctctata ttcgtggtat gggtcaaaac tcaattgatg
    11461 taaaagtaga taacacttac tcagatagcc aaattttgta tcaccaaggt cgccatatgt
    11521 tagatcctgc acttgtaggt acggttacag tacaaaaagg tgcgggtagt gcttcagccg
    11581 gtattggtca aactaatggt gcagtaattg ctaaaaccgt tgatgcatta gatttattaa
    11641 aaaacagcga taaaaacttc ggtgcaaaat taggtactgg cttcagcaca aaccacgctc
    11701 acaatttcaa tgcaacctta tatggtaaag gcgaaatctt tgatgcttta gtctcaggta
    11761 atcttgtgag agatcgcgac tataaaggcg gtaaagatta cgtaaaccaa ttcggcacaa
    11821 accgtgtacc atacagtgcg ttagataaaa gtagcttctt agcgaaatta ggtgcaactc
    11881 ttggtgatca tcgctttgta ttaagtcatt ctaatgagcg aaatgaaggg gagcgtttgg
    11941 ttcgtgaaga gtttgatgca gcacctgtag gtactaaagg tagccgtgta actttagatc
    12001 gtcaagcacc ggcaaatcgt agaatgacag tacaaagaac taacttagag tggactggta
    12061 aaaacttagg ttttgctcaa gaagcaacag ctaacgtgta tcagttagta caaggtcgtt
    12121 ggtctgagaa tgaaacacgt aatggttatg ctggtggtgt agattatgca accaaaacta
    12181 aaatagtaac ccacggtgca aacgtaaact ttgattctgc ccttcacgaa aatgtattat
    12241 taaaatacgg tgtgaactat cgccaccaag agactaaacc atatgctaaa tttagtcatc
    12301 aattagtgaa ccaagagaaa accgacaccg gtgtatatct tgaagcgatt actgctccgg
    12361 ttgataaagt gactttaacc actggtgtac gttacgacca cttcaaattc aaagcaatgg
    12421 acggtaaaaa acgtagtgag ggtgcattta acccaagtgt aggcattatt tatgagccaa
    12481 ttcagcattt aagttttagt gcaagccata actacgcaac tcgtagccct cgtatgcacg
    12541 atgcgttact atctcacgga cgtcgtggtg ttgtatcaat tgctaacaat actaaagcag
    12601 aacaagctcg tagtacggag attggtttta actataatga cggcaccttc agctttgacg
    12661 gtagctattt ctggcaaaac atcaaagatg ctttaggtac atcaaccggt cgtaacaacc
    12721 atctatgtcc tgaactgaca cctaatacta ataataaaga gtgctactca gaaattatca
    12781 atgcaggtac tattaaaaac cgtggttacg agttaaacgc aggctaccac aacaacggtt
    12841 ttactgctcg tgttggtgtt gcacatagca agcctcgttt ccaaggtgat agattaagta
    12901 ctaaccctga gtatgcatct gcaatcggtc gtacttggac agcatcttta agctatcgct
    12961 ttgaccaacc aaacttagaa gttggagtac atcaccgcat tattgaaaaa gttaaagctg
    13021 aagataacta ctttgttatg aataataatg gtattcctca atttggacgt ggtggtccaa
    13081 caggtaaaga cggttataac gtaactgata ttaccttaaa ctggaaaccg ttgaatgatg
    13141 atagcgtgaa tgtaaacttt gctgtagata acgtagcaaa taaaaaatac aacgcacacg
    13201 gtcagcgtgg tcaattatca gctcgtggac gtgaattccg tgcaggtgtg aactacacat
    13261 tctaatctaa tcccatttag tcaaaacgcc cgaattatcg ggcgtttttt atggcttaca
    13321 agcggttata tttcagtgat ttttgcaaat aaaaaaccga ctattttagt cgtttgttat
    13381 ttaaatgcgt ggataaagtc tgctactatg aataatggta ataatccaca cttcattttc
    13441 taattcggta taaacaatac tataacgcct agtgaatgct tctcttgtgc catcttctct
    13501 taaacgtcca gccgcagagg gcatataagc gatagtctca aatttttggt aaatatcttc
    13561 ttgtaagcga attccactac tttcaaaacc agtatattca attacgctcg ctaaaatttc
    13621 ttcaatatca ttttgagctc tactgctaat tcgtaatgtt ttagccataa atgatattct
    13681 cttgttcaaa gtttgcgagt tctcttgctt tacgttcaat cagttgtttg gttcgtgctt
    13741 ttgattcatc gagtgaaaga ccattacctg attgcatatc ttctaagcca aggcgaattt
    13801 tttctgctag gaattcatca tagcctttct ctttaaacat aatctgctcc tattaagata
    13861 taattaaaag cattgtctgc ttttaatttt gagttgtcaa attaacttat ttttaaatta
    13921 tcttttaaaa cagattgata gaggggacct tctttgaaag gtattcatta gtattgaaca
    13981 aatttatttg atactaatga ataaatgtat ctaacagcaa acgtctgaca aatatagcaa
    14041 tcgtttgcgc aatcgtttat aatcggttta gtttttcatc ttaaatagga aaatccaaag
    14101 aatgacaatc caaaccttcc gtggctcgcc tgccttatct gcttttcgca ttcaacaact
    14161 tctgcaaaaa ttccaacaaa atcaattacc tgtaaaatca gtttatgcgg agtttttgca
    14221 ttttgtggca ttaaatcgac cgcttgtagc cgatgaagaa aacaaaatca aagagttatt
    14281 gcactacggt ccaacgctgg aagaagacga gccgacaggg ttttgcctga ttgttacccc
    14341 tcgtatcggc acgatttcct cgtggtcgtc taaggcaacc gacatcgccc ataactgcgg
    14401 tttggcagca gtagagcgaa ttgagcgtgg cacggcatat tatttagaat tttctgaaac
    14461 gccgaacgaa agtcaactta cgacgttgaa aggcttatta cacgaccgta tgatggaaac
    14521 ggtgctggat aacgaaagcc aagccgaaca gcttttcgct cagcaagagc cgaagccgtt
    14581 tacttcggtg gatattttag gcggtggtcg tgaggctctt gaagaggcga acgtgaattt
    14641 aggtttggca ttggcggaag atgaaattga ttatttggta gaaaatttca ccgcacttgg
    14701 acgcaacccg aacgatattg aactgtatat gttcgcccaa gccaactccg agcactgtcg
    14761 ccacaaaatt tttaacgcag actggacgat tgacggcgtg aaacaggaaa aatccctgtt
    14821 caaaatgatc aaaaacacct tcgagaaaac cccagactat gtgctttccg cttataaaga
    14881 caatgccgcc gtgatggaag gttcaacggt cggccgtttc tttccagatc aagacgggca
    14941 atatcgttac catcaagaag atgcgcatat tttaatgaaa gtggaaaccc ataatcatcc
    15001 gactgctatc tcgccattcc ctggtgcagc gacaggttcg ggcggtgaaa ttcgtgatga
    15061 aggggcaact gggcgtggag cgaagccgaa agcaggtttg acaggcttct cggtctcaaa
    15121 tttggttatt ccaaactttg aacagccgtg ggaaaacccg ctctctaaac cgagccgtat
    15181 tgcttctgcg ttagatatta tgatcgaagg cccacttggc ggtgctgcat ttaataatga
    15241 gttcggtcgc ccagcattgc ttggctactt ccgcacttac gaagaaaaag taaatagttt
    15301 tgcaggtgag gaagtgcggg gttaccataa accaattatg cttgctggcg gtattggcaa
    15361 cattcgtgct gaacacgtgc aaaaaggcga aatcccagtg ggagcaaaat taattgtgct
    15421 tggcggccct gcgatgaata ttggcttggg tggcggtgcg gcttcgtcta tggcttcggg
    15481 caaatcgaaa gagaatttgg attttgcctc ggttcagcgt gaaaacccag aaatggaacg
    15541 tcgctgccaa gaagtgatcg accgttgctg gcagatgggg gcggagaacc caattttatt
    15601 tattcacgac gtgggggctg gcggtttatc aaatgcgatg cctgaattgg ttcacgacgg
    15661 cgaacgtggc ggtaagtttg atttgcgtaa catcttgtgc gatgaaaaag gaatgtcgcc
    15721 acttgaaatt tggtgtaacg aatcgcaaga gcgttatgtg cttgccgttt cccctgaaaa
    15781 actcgacatt ttcacagcat tgtgcgaaag ggaaagagcc ccatttgcgg tgattggcga
    15841 ggcaacgaaa gagaagcatt taacccttgc tgacacacat ttcaacaata agccgatcga
    15901 tttgccgatg aatgtactgc ttggtaaaac cccgaaaatg caacgagatg cttcgtcaaa
    15961 aaccgtaaaa aatccaccgc ttgtcaccgc tgatattgat cccaaagagg catttcatcg
    16021 tgtattacgt ttgcctgcgg tggcggaaaa aaccttcctg attactatcg gagaccgttc
    16081 ggtaaccggt atggttgcac aagatcagat ggtcggtccg tggcaaattc cagtggcgga
    16141 ttgtgctgtc accaccgcaa gtttagacag ctatcacggt gaagcaatgt caattggcga
    16201 gcgatcacct gttgctttgc ttgactttgc tgcctcagct cgcctcgccg tggcagaaag
    16261 cattactaac attgctgcaa ccaacattgg tgatattaaa cggattaaac tttcagcaaa
    16321 ctggatgtca gcagcaggtc acgaggggga agatgcaggg ctttatgaag ccgtaaaagc
    16381 cgtgggcgaa gagctttgcc ctgcacttgg cattacaatc ccagtgggta aagactcaat
    16441 gtcgatgcga accacttggg aagagaacgg cgaacaaaaa tcggtaactg ctcctctttc
    16501 tctcgtgatt tccgcattcg cccgtgtgga agatgtgcgt aaaaccgtta ccccacaact
    16561 tcgtaccgac aaaggcgaca ctcgcttgct gttaatcgac ttaggcgaag gtaacaaccg
    16621 cttaggtgcg accgctctgg ctcaagtgta taaacagatc ggcgacaaac cagctgatgt
    16681 ggtcaatgtt gaacgcttaa aaggcttctt caatgcaata caaattcttg tcgcacaaga
    16741 aaaactactc gcctaccacg ataaatcaga tggcggttta attaccactc ttgcggaaat
    16801 ggcctttgcc ggaaattgca aaattcgtgc tgaaatcgac cgcttgggaa cagacgactt
    16861 aggcgtgctg ttcaacgaag aacttggggc agttattcaa gttaaaacct ctgatttaga
    16921 gagcgtacaa gcggtattaa aagcggaaaa tcttgcaaat cttacctacg atatcggttc
    16981 agtcgcacag ggtgatggct ttgaaattac ccgaaatggc gaaatggtat tcagccaaaa
    17041 acgctccgaa ctgcgaggca tttgggcgga attgacccac caaatgcagc gtttgcgtga
    17101 taatcctgaa tgtgcagacc aagagtttga agcgaaaaaa gacccgaata acaaaggctt
    17161 atcggcgttt ttaacctatg atgtgaatga agacattgcc ctgcctttca tcaacaaagg
    17221 cacgaaacca accatcgcta tcttgcgtga gcaaggcgta aacagccact acgaaatggc
    17281 ggcagcgttc gaccgtgctg gttttaatgc aattgacttg catatgtccg acttgatctc
    17341 tggtagacgt aacctaaacg acttcaacgc aatggtggcg tgcggtggtt tttcttacgg
    17401 cgacgtactg ggtgcgggcg gcggctgggc gaaatcaatc ctattcaacc caatgttgcg
    17461 tgatcaattc agccaattct tcgttaaccc gaacacgctg gcattagggg tatgtaatgg
    17521 ttgccaaatg gtctccaatc tagcggaaat tattccaggc acagaaaact ggccacgctt
    17581 cgtgcgtaat aaatccgaac gttttgaagc tcgtgccgca atggtgaaaa tcaacgacac
    17641 caactcgctc tggttcaatg gaatagctgg cagccatatg ccgattgcag tcagccacgg
    17701 tgaaggacag gtggaattca agcggtcgga acagctcgaa aacttgcaaa aacagaactt
    17761 ggtcattgcc caatatgtcg atagccatct caacccaacc gaacaatacc cagccaaccc
    17821 gaacggatcg gcgttgggta tcaccgctat cggtaataca gacggacgag tcgctattat
    17881 gatgccacac cctgaacgtg tgttccgtgc ggtcagtaac tcttggtgcc cagaagattg
    17941 gacggaagat ggagcgtgga tgcggttgtt tagaaatgcg agagtggcgt tgaagtatta
    18001 aaaatctacc ttcgtagtga tctgccccca tagggggcga ttaaaattcg aattcataga
    18061 acccgaattt ttatatatct gataaacgaa gttgtttatc ctctaattcg tgcttttcct
    18121 gatatttcaa gtactttctt atcatttctg cattgacatc tacggtgtct acgcagtagc
    18181 ctcttgccac aaaagtgggt tgccccacaa tttatgctta cgtaaatagg gaaacttatt
    18241 gaaaaatctt attggaccct gttcaccctt ttaaatgccc cattacgtct tatacagaaa
    18301 atgaacgtga tttatttgaa cggtcaattc taccttaata gaaagtggtt tttagttagc
    18361 aatcaaaatc acattaacgg aattgagaat ttggagagtc aggcaaaatg ctatttgcgt
    18421 aaatttaacg gcgttcctaa agtacatgaa ttctatttga aagaatgcag atggcgtttt
    18481 aatctcagta acttaaaata tcaagttttc tttttaaaac aattggttaa attgagtttc
    18541 taggatagcc ccttattttt ataatcctct atttaagtgc atatttctat ttatgctaat
    18601 cgtctaacgt atccttttat tataatattg aacatgatta ctattttcgt cttgtgctat
    18661 actagactcg cgcaataaag gcacacttct ttcttcagtg tctttagcgt tgcgatttaa
    18721 atttaattac attttttata ggaaagacaa tagaaatgaa gatcaaaaaa tatgtatttc
    18781 acctgacttg tacaacactt atctgcccct tacctagggt attcgcagag gaaggttata
    18841 tgttagatac ggttgaggtt aaagcccaag caataaaaaa aacagatgaa gttttcatta
    18901 aaacaggggc aataagcacc cgagataaaa tcttggaatc aaaccaaagc ttagagacta
    18961 ttgttcgttc tatgcctggc gcatttacac aaatggataa atctcaaggt gtggtttctg
    19021 ttaatattcg aggaggttct ggatttgggc gagctaataa tgcaataggc ccaaattata
    19081 tgggaatgct cgctggcaaa taccaattca atgactctac ttggatagga gcattatttg
    19141 ggcatagttg gcgcaaaatc tctcaaaatt ataaaatagg aggcggacga aaagttacgg
    19201 atagctcgat tgaccttagt aaaattgatg atctagataa agaaagttct accacctcac
    19261 cgttcaatgc agctcattta aaacaaaaac caatgagtcg tatggctaaa ttggaatatg
    19321 gcgataaata ccaaaccatc acactattac caaagtcagg tagcgggtag acatttaaaa
    19381 aaccaaaaca accagttaaa ttatcgtttt cacttgcccg agtcaccttg gttagatgtt
    19441 caagtggcct atgcggaaaa tcaaggcaaa caaaactaca acaaagggag ctgaattaat
    19501 aataaatatt taattcaagg tttggcaatt aacaacaaag cgacaacctt aaatttgagt
    19561 aacaccttta aagtgtctcc gtttaaagat ggagaatggg aagcaatatt aggttttaat
    19621 cgtttaaaga accgctatag taaaaataga catcctgcgg aattaaacta taacttagag
    19681 aatggcgaaa ccagcgaaaa caacgattct gtaggaatga cagccgttcg taaatcgctt
    19741 tatacttcaa ctttccagcc tgatggcgaa cagaagttcg atacttttta tctcgacaat
    19801 cactttaact atggtatatg gggattggat ataaacgcaa atattaatac cgctcggttt
    19861 attggtcagc gttttaaata ttttcctttt gcgattagag aattggagtc agatattaga
    19921 caggcaagta gaaataggca gtttgagcat ttaaggtcat tacaatctca attagacaac
    19981 ttgcaaaaaa acattgtaca tatattccag atgaggattt tcctaatgat cctgaattgg
    20041 gagagtttaa ctgtcctgat gtcaattttc ctcatacagc aacaggaaaa cataaacgaa
    20101 ttaattattc agcaaccttg tctgcttata ttcacgattt attcacgccc tttattagtt
    20161 attctcaaac acatcgagcc cctaatatta aagaaatatt cttctctaat ttaggtgact
    20221 atggtgtaaa taccgcacta caaccagagc aagcgaaaac aacacagttt ggtattaatg
    20281 gattcaaaga acgggtattt agtgaagaag ataaattagg atttaaagtg ctattttata
    20341 acactcactt aaaaaactat atttataatg tacaacatac cgctgttggt agtgctccta
    20401 gtttattcat tttccacaaa aactatgaaa aaccagtaaa tatcaaaggg atagaattag
    20461 aatttagtta tgatataggc tctttctatg gcaacttagc ttatgctcgt caaaatacga
    20521 atcaacccgt atcctttaca gatgcaagtt caagggtaga tgccgcttct cattatggtt
    20581 ttaaaactca aggttttggt gccagcaaaa tttcagcgtt accaagagac tatggctcat
    20641 tggagttagg gacaagatgg tttgatcaaa gactacaaat tggcggagtg gcaaaatatt
    20701 acggaaaaag taaacgtatt gcgatagatg agtttaacta tacttattat cctggaacac
    20761 atattgtgaa agaaactcat cggcttgaag aaactgtaaa taaacaacct attattgttg
    20821 atttttacgt gagctacgaa ccaatcaagt cgcttatatt aaagttagaa ctataaaatg
    20881 tctttgacaa aaagtacatt gatcctcttg atgctaataa tgatgcagca agtcagaggg
    20941 tttacaattc tgatatcagt gatgaaccta tttatacgct caataattat gcaagaggga
    21001 gaactatagt gtttagcaca agttataaat tctaaatggg gttgtcctag ataagctagc
    21061 ttaaatttcc tttaactaat tatttggtat agtgactaaa attgagtctg cacagtaggt
    21121 taaaacctta taatataagg atttaaccca gatggtgcaa gcgttcacgc ttgtgccagt
    21181 taattcctgt tctgaaagta tttcagtcat aagataaaag cctaaattag ccaagtaaaa
    21241 tttggtttat ttgggctttt gtttttggca caagcgtgga cgcttgcgtc atcattttat
    21301 ttatccatcc attgctatca tttcagtatt tctttggctt atcacaagcg gttaaatttt
    21361 atcaacactt tgcaagtttt aatgattttt gcgatctaga tcgaaaaagt tatattggct
    21421 tgtggaattt aattttgaat agggtatttt tcttattcct ttttaagttg agaaaggcta
    21481 tgagccgaaa atataaattc cacgaaaaga gcggtgctta ttttgtcagt tttgcaactg
    21541 tttattgggt tggtgtgttt gtgagagaga tttattttca ggtaattgtt gatgccttag
    21601 attactgcag aaaacataag ggaatgattt tgtatgccta ttgtattatg ccaactcata
    21661 tccatttatt atttcaagca gaaaatcaaa atccttctga tttaatacga gatttcaaaa
    21721 cattcaccgc taaaatactt attcagagaa ttaaagataa tttgcaagaa aaccgtcggg
    21781 aatggttgct gtggatgttt tctcgggcgg ctgaacgacg ttgtaatgta aaacaatatc
    21841 aattctggca acatcataac caacctattg aaatctattc gcagaaattc tttgatgaaa
    21901 agttaaatta tattcatcaa aatccagtgg taagtggttt tgtgtctgag ccttgggaat
    21961 ggaaatataa ttgaaataaa ctgcttgtat ttttgcgatc tctgtcgaaa aattgtgaat
    22021 ttttacttgt ctgtcggaga attttgcgta aattctgctt attatgtttt agttaaaggt
    22081 attctatgag tagataaccc aaatgaaaat agcgatataa cctatttcta cccagtaatt
    22141 aattcccgct tttatgtatc agatcaaata atttacactg atttatcggt attatctgtc
    22201 tttagttttt ttaattaagg agccttatat gaaattcaaa aaattagcat tagcagcaat
    22261 gttaggtggc ttatttgtaa cagctaatgc ggcagaatta cctaatatca ctattttagc
    22321 gacaggcgga acgattgctg gtagtcagca gaatgcaaat agtagtgctt atcaagcagg
    22381 gcaattgaat atcgaaacct taattgaagc agtgccagaa atgaaaacat tggcgaatat
    22441 caaaggtgag cagattgtga aaattggccc actaaagcct tgttagatgt aggctatcaa
    22501 ggtattgtcg tagcaggtgt tggtaacggc aatatgaatg cggaaaatct tgcattattt
    22561 agaggaagcc aacaatattt ttaagatttt taataaacgt taaagcatat aaaaaatggc
    22621 ataagtgagt cacttatgcc attatttttg gggctgtcct agataactaa cctaaccccc
    22681 ctttaaccaa ttgttttaaa aggaatattt gagattttaa gtcactgtga ttaaaacgcc
    22741 attcgcattc tttcaaatat agctcaaaat gggctttcgg aataccatta aacttgcgta
    22801 aatgacgttt tgcttgactc caaaaattct caattcc
//
LOCUS       DANLUT010000015        22802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLUT010000015 DANLUT010000000
VERSION     DANLUT010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(16..681)
                     /gene="rnt"
                     /locus_tag="PXB38_000547"
     CDS             complement(16..681)
                     /gene="rnt"
                     /locus_tag="PXB38_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL5352903.1"
                     /translation="MENITESTSQSTTPPTDYNLLKNRFRGYLPVVIDVETAGLNAQT
                     DALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNGIDIDNPLRGAVA
                     ENIAIPEMFKMVRRAMKEQGCQRAVIVAHNAAFDQGFLQAAVKRINAKRDPFHPFAMF
                     DTATLAGFMYGQTVLVKACQAAQISFDGHQAHCALYDTEKTTELFCAMVNKLKDLGGF
                     PHI"
     gene            complement(764..1171)
                     /gene="gloA"
                     /locus_tag="PXB38_000548"
     CDS             complement(764..1171)
                     /gene="gloA"
                     /locus_tag="PXB38_000548"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL5352904.1"
                     /translation="MRILHTMLRVGDLERSIKFYTEVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDSYELGTAYGHIALGVDDIYQTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKNAQAALGN"
     gene            1263..2078
                     /locus_tag="PXB38_000549"
     CDS             1263..2078
                     /locus_tag="PXB38_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352905.1"
                     /translation="MAHDHDSPSKLEIATHAALPMVLMLFIEMALNFYASPDNAIFIS
                     PYLLAFFVTSFIAILVLWKGEICRGQTSRLTFILPFLLIFAVGNFIYSIAFTPKYNPM
                     AIASFAAILSCLIYFRLPEDETLYNTLMYCGFGIVAIGIIQYLAIYWIELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDIFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFSIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLALLYPFANVV"
     gene            2082..2351
                     /locus_tag="PXB38_000550"
     CDS             2082..2351
                     /locus_tag="PXB38_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352906.1"
                     /translation="MKRALKFFGIATVLSVAAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLFCR"
     gene            3016..4171
                     /locus_tag="PXB38_000551"
                     /pseudo
     CDS             3016..4171
                     /locus_tag="PXB38_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4163..4636)
                     /gene="folK"
                     /locus_tag="PXB38_000552"
     CDS             complement(4163..4636)
                     /gene="folK"
                     /locus_tag="PXB38_000552"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL5352907.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKLANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(4839..6170)
                     /gene="pcnB"
                     /locus_tag="PXB38_000553"
     CDS             complement(4839..6170)
                     /gene="pcnB"
                     /locus_tag="PXB38_000553"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL5352908.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLRDDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPAIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAALLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTVKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSHDAMMLAANDVLAESCK
                     AIALHRRHTSVIRDIWALQFQLMKRTGNRLQQTLEHIKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNDGQRTELLKSVRQSGSVPSEKKKTRRRRTFKKKSKVNG"
     gene            complement(6415..6861)
                     /gene="dksA"
                     /locus_tag="PXB38_000554"
     CDS             complement(6415..6861)
                     /gene="dksA"
                     /locus_tag="PXB38_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL5352909.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDDYGFCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(7111..8064)
                     /gene="thiB"
                     /locus_tag="PXB38_000555"
     CDS             complement(7111..8064)
                     /gene="thiB"
                     /locus_tag="PXB38_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL5352910.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTSEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(8108..8251)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8535..9521
                     /locus_tag="PXB38_000556"
     CDS             8535..9521
                     /locus_tag="PXB38_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL5352911.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDIIGGLPYRDEVDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(9576..9995)
                     /locus_tag="PXB38_000557"
     CDS             complement(9576..9995)
                     /locus_tag="PXB38_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL5352912.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(10062..10817)
                     /gene="kdsB"
                     /locus_tag="PXB38_000558"
     CDS             complement(10062..10817)
                     /gene="kdsB"
                     /locus_tag="PXB38_000558"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL5352913.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(10827..11780)
                     /gene="trxB"
                     /locus_tag="PXB38_000559"
     CDS             complement(10827..11780)
                     /gene="trxB"
                     /locus_tag="PXB38_000559"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL5352914.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            11947..13017
                     /gene="dhaK"
                     /locus_tag="PXB38_000560"
     CDS             11947..13017
                     /gene="dhaK"
                     /locus_tag="PXB38_000560"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL5352915.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            13035..13661
                     /gene="dhaL"
                     /locus_tag="PXB38_000561"
     CDS             13035..13661
                     /gene="dhaL"
                     /locus_tag="PXB38_000561"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL5352916.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            13671..14078
                     /gene="dhaM"
                     /locus_tag="PXB38_000562"
     CDS             13671..14078
                     /gene="dhaM"
                     /locus_tag="PXB38_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL5352917.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(14118..14963)
                     /locus_tag="PXB38_000563"
     CDS             complement(14118..14963)
                     /locus_tag="PXB38_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL5352918.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(15007..15333)
                     /gene="glpE"
                     /locus_tag="PXB38_000564"
     CDS             complement(15007..15333)
                     /gene="glpE"
                     /locus_tag="PXB38_000564"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL5352919.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFEKVYSVKGGFEAWERNGL
                     PIETSY"
     gene            15484..15942
                     /gene="exbB"
                     /locus_tag="PXB38_000565"
     CDS             15484..15942
                     /gene="exbB"
                     /locus_tag="PXB38_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL5352920.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            15979..16416
                     /gene="exbD"
                     /locus_tag="PXB38_000566"
     CDS             15979..16416
                     /gene="exbD"
                     /locus_tag="PXB38_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL5352921.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            16432..17331
                     /locus_tag="PXB38_000567"
     CDS             16432..17331
                     /locus_tag="PXB38_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL5352922.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREEEKPKDKPKERPKHHHKHIKALERGPEIKQGI
                     VAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVALQRA
                     LQRKANNSYPQREKMMRKTGTVTIKFTVTSSGSITNVSVLNSSGNSNLDNAAVRSAEG
                     LSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(17400..18281)
                     /gene="cysZ"
                     /locus_tag="PXB38_000568"
     CDS             complement(17400..18281)
                     /gene="cysZ"
                     /locus_tag="PXB38_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL5352923.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            18393..19295
                     /gene="zipA"
                     /locus_tag="PXB38_000569"
     CDS             18393..19295
                     /gene="zipA"
                     /locus_tag="PXB38_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL5352924.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYDQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            19360..21417
                     /gene="ligA"
                     /locus_tag="PXB38_000570"
     CDS             19360..21417
                     /gene="ligA"
                     /locus_tag="PXB38_000570"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL5352925.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVVLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(21480..22748)
                     /locus_tag="PXB38_000571"
     CDS             complement(21480..22748)
                     /locus_tag="PXB38_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5352926.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         6849 a         4974 c         4533 g         6446 t
ORIGIN      
        1 ccatcttcct ctacactaaa tgtgtggaaa gccgcccaaa tcttttagtt tattcaccat
       61 agcacaaaat agctctgtgg tcttttcggt atcgtataat gcacagtggg cttggtgtcc
      121 gtcaaaacta atttgggcgg cttggcaggc tttaactaac accgtttgtc cgtacataaa
      181 acctgcaagg gttgcagtat caaacattgc aaaggggtgg aagggatcac gtttagcatt
      241 aatcctttta accgctgcct gtaaaaatcc ctgatcgaac gcagcattgt gagccacaat
      301 caccgcacgt tggcaaccct gctctttcat cgctctacgc accattttaa acatttcggg
      361 aatagcgata ttttctgcca ccgcacctcg caatgggtta tcaatatcaa tgccgttaaa
      421 ctttagcgac tctgggttaa tattcgcccc ttcaaacggt ttgatatgaa aatggcattt
      481 ttggtcttcc actaagtaac cgttttcgtc cattttaacc gtaattgccg ccagttctaa
      541 taacgcatca gtttgagcat taagccccgc agtttcaaca tcaatcacaa cgggcaaata
      601 accacgaaaa cgatttttta atagattata atcggttggt ggtgtagtcg attgagaggt
      661 agattcagtt atattttcca tttttatttc aacttaaaaa tacaagcggt ctgatttgca
      721 aaatttttta caaatccgac cgcttgtgaa tagataaaag gaattagttt cctaatgcgg
      781 cttgtgcgtt tttgttttca ataaattcga ttttataacc atccggatct tccgcaaaag
      841 caataaccgt tgtgccgcct aatacaggac ccggctcacg ggtaatttta ccacctgccg
      901 cacgcacatc ttcaatcgtt tgataaatat catcaacacc taatgcaata tgaccataag
      961 cagtacctag ctcgtagcta tccacacccc agttgtaagt cagctcaata actgcacttt
     1021 cgctttcgtc agcatagcct aagaaggcta aagagtactt gtattgctcg ttctcacttc
     1081 tgcgtaacaa acgcatacct aacacttcgg tatagaattt gattgaacgc tctaaatctc
     1141 caacgcgtaa cattgtgtgt aaaattcgca tattttcttt cccccttgaa gttaaaaaat
     1201 cttgcgtatt atggcataat ttgagcttaa aatcattttc tttcaatttt ttaggattat
     1261 ttatggctca cgatcacgac agcccatcaa aacttgaaat tgccacacac gcagccctgc
     1321 cgatggtgtt aatgctattt attgaaatgg cacttaattt ttacgcctct ccggataatg
     1381 ctattttcat ctccccttat ttattggcgt tttttgttac ctctttcatc gccattttag
     1441 tattatggaa aggtgagatt tgtcgtgggc aaaccagccg cttaaccttt attctgcctt
     1501 ttttactgat ttttgcagtc ggaaatttta tttattcgat tgctttcaca cctaaatata
     1561 acccaatggc aattgcaagt tttgctgcca ttttatcttg cttgatctat tttcgtttgc
     1621 cggaagatga aacgctctac aacacgttga tgtattgtgg ttttggcatt gtggcaatcg
     1681 gcattattca atatttagca atttattgga ttgaactgcc ttcattgttt aacgggattc
     1741 gagccaacaa tttcgcccaa gtgctgttag gcattttatt agccggctgg tatttaatgt
     1801 tagcgaaaag ccgtttggat attttcctca aactgttggt gaaaaccgcc cttgtggtgc
     1861 tgattctcaa ttattgctgg acagcttttg tgctttatca acatctacaa attatgccgg
     1921 atatgccatt gctttcattt agcatctatt ttgcagcaca atttgtgatt ttattgatgt
     1981 tggcgtggtt attacttgga aaaaacatca aaaatccgac cgcttggaca gttgctacgc
     2041 tgttagcgct tttataccct ttcgctaatg tagtctgatt tatgaaacgg gcattaaaat
     2101 ttttcggcat tgcaaccgtt ctatctgttg cggcaatcta ctatttttta atgcccagcc
     2161 actatcttgc cacgccgatt aactggattt tgccgaaagc gtggaaagtt caactcccac
     2221 aaggcttaaa cctgaattgg caaggctcat cacttgctca atttcaactc tcttatcgag
     2281 attgcccgct actaagtgcc gataaaaccg atttgggttg gattgagaaa aaccatcttt
     2341 tctgtcgata aattggatat tgattaccgc tgccttgcct tgtttccaca aaatgaacac
     2401 agcaattccg acacttcact caacgcattg ctggcggtca ttcctgatgg cgaagcgact
     2461 atccacgccc ttaactggaa aaatttgcct accgatttca acccaagact tcagcggctt
     2521 tttgagcaaa cagctattaa actctcactt tcaaaaggtg aaattcaggc aactgccgct
     2581 caacaagcgg tcaaatttgc agcaaatttt gcaaatgggc ggttgaatgc cgatttatca
     2641 tatcaaccga atgaaaaaga acagcataat cttaggcttt cagcagaaat tgaggacaat
     2701 tttacccaac tgccgcccac tatttccgct gaatatgatt ggcaattatc tgatgaaatc
     2761 atcgccaata aagccttgca aaaagggcgc tctattctca gttggcaaaa aaatgccgca
     2821 caaaagttag aaggcaactg gcaggttgaa cttgccgaaa gtgaaaataa caaactggat
     2881 ttcccttttc tgtttgatgg ggaaagccta gaaattcaac aagggcggtt tgattggcac
     2941 tttacccaac aatttccact gcaagggttt gttagcacca agctcacacc gaaatcattc
     3001 aaccaaaacg gctttttgcc actcaaaacg gcgattcgta tcagcctgct ttcccaaaac
     3061 agttggggta aaggcaatat tgtaatctcc aattcagacg gagaaataac cgaaaaaggg
     3121 ctgaatttac cgcttcgttt gacgggtaat atcaaacacg gcaattttat tctttacagt
     3181 agcgtgccac tggattttca aggtaatttt gacgatttaa gcgtaaaatt tttgcctagc
     3241 tccctacttc gtttgaccgg aaaagaacgg tatttaacca ttgaagattt acgttttcca
     3301 cttgccggaa ttaaaattga caagcacggt attcacggac gactgcacgc aattttaaga
     3361 gggcaaagcc ctgattttaa caatatcgag ttccatttag acggacaagc acaaaatttt
     3421 aaggctggag ccttagattt tttccaagat cctaaagatg ccaacgcagt aaaagacagt
     3481 tggaaatggc gaatttgggg agcatctatc ctcaaagcct tcaacagtaa agtgaattta
     3541 agcggcagag ggcaatggca taaacagctt gtgcggttgg aagaactcaa aggcgattta
     3601 gccaccgtaa agttagcaga tacaaccatt tctaaaatca cgcttaacaa tacgcaagct
     3661 attcgattta atgtcaaaaa attcaccctt gacggagcgg taatgttgca atcacctgag
     3721 attgccttca gttatggcgg tgtgctaccc aaaccacgag tgaatctcgc ctttgatggt
     3781 gaagtcgaaa aactacgttt taaaggagcg gtgaatacca ccgaactcgg cccactcaaa
     3841 ctgttcgccc gccgccaatt aagccaagat gccagccaaa ttatcggcaa actttattgg
     3901 ccggagcaat ctgctcaagg cttccagccg ctttttccgt ttcgtagccc atgggtgatc
     3961 aacaacggta caattcgggg cgaaacggcg tttagtgccg gcagtaaaaa cgggctgatt
     4021 gccggtgggc atttagccat tcgtaacggc ggtttatctt tacctaatgg ccgaagcaaa
     4081 agggattgaa ttttcgcttc cctaccgcta ccaaaacgga cgctttcatt tcggagccaa
     4141 aaaaccagaa caaaacgaaa aattagctga agataatcat ttgatgatct ttaaattgtg
     4201 cataaatatc ggctaatttt tcccctgtcg gtagtactaa atcaggcgtt aaatcaaaca
     4261 tcggcacaat cacaaattcc cgatttttca tctcgatatg cggcacgttc aaacgctcgg
     4321 tttgaatttg ctgattgccg tacaaaataa tatccagatc taaagttctc tccccccaac
     4381 ggcgtacacg cactcttccc tgctcatttt caatgctttg caatttatcc agcaatgcag
     4441 tgggcgatag gtcggtacta aattttgcta ccgcattgac ataatcaggc tgatcttgcg
     4501 gtccgacagg ctttgagccg tagaacgggc tgatttcaaa ctcatttgcc aattttttta
     4561 atttttcgac cgcttgttta agctgctcaa gcggattctc aaggtttgat cctaaggcga
     4621 tatagacggt ttgcataaaa tatacttaca aatataacaa taaactctct ccccttgtgg
     4681 gagagagacc gcttatgagc gttcagcgaa ataagtagag agaggggaca agcggtaact
     4741 tttattaaat tttttacaca tttcccctct ccctgatttt tcttctgaac gaagaaaaat
     4801 cgctccctct cccacaagag gagagggaaa tatattaatt atccatttac tttcgatttt
     4861 ttcttaaagg ttctacggcg acgtgttttc tttttctcgc taggcacact gcctgactgg
     4921 cgaaccgatt ttagcaattc agtacgctga ccgtcattgc taaattggta ttcgtgccac
     4981 caagcggaaa gttcgaccaa atcgccacct tcaatttccg cccgcattac taataagtca
     5041 aaccctgcac ggaatttgat atgttctagg gtttgttgca gtcggttgcc ggttcgtttc
     5101 atcagttgga attgcaatgc ccaaatatct cgaataaccg aagtgtgtct gcggtgtaac
     5161 gcaatcgcct tacaactttc tgccaacaca tcatttgccg ccaacatcat tgcatcgtgg
     5221 ctgttgaagc caccttcatt tttaagctgt tccattttct cccgtaacgg ataccaaagt
     5281 agtgcagcaa ataaaaaagc aggattgacc ggtaatttat cggcaattcg ctcatcagtt
     5341 gaatttaacg ctttggtaat cattctttcg gcataggaat cgcctttgac agtaaaaaat
     5401 gccggcaata ccggaaacaa gaattgccat agttcatatt cacgcaaaag ttgataggtt
     5461 ttcagccctg caccggtttg taataatttg agtgactcat caaataaacg ggctgccgga
     5521 atgttggtta acagtgcagc catatcccga attggggagg cagtggcttt atccaaaaac
     5581 atatccaact tcgccataaa gcgaacggct cgcaacatac gcaccggatc ttcttggtaa
     5641 cgaatggctg gctcaccaat tagcgaaagt ttacccgctc gtaagtcttc aatgccgttg
     5701 aagaaatcaa aaataagatt gcgttttata tcgtaatata aggcgtttac ggtgaaatca
     5761 cggcgttcgg catcatctcg gagtgtgccg taaacgttat cacgtaggag cattccttca
     5821 tcgctgactt tagaaatttt gtcattgcga tgagattcgt gcccggcacg gaaagtcgct
     5881 acttcaaaaa tttcacgccc gtaaacaata tgtgccaagc ggaaacggcg accaatcaga
     5941 cgacattgtc tgccgaaaat acgctgaatt tcttcagggc gcgcattggt cgcaatatcg
     6001 aaatctttag gctttttctc caagagtaga tctcgaatac agccacccac aatataagct
     6061 tcataaccgg caatctgcaa tttatcgaca atcgaaatcg catttttagg aaaatccttc
     6121 gggctaattc tatattggct ggcattcacc gcaaatttct tgtgtaacaa atgggaggga
     6181 ggattatctt gttgtttttt cccacctcta taagtctttt ggtccgttaa gttcggggct
     6241 gggcgtttag aacgggaagt tttgggttct ctttccgctc ttttttcact ctctaccttt
     6301 tcatttttct gagccgactt tttaggcttg gaaaataatg atttaatata attaaaaata
     6361 atacacctct aaatagtaaa tgcctcttaa aaaagaggca ccctgtaaag ttgattataa
     6421 gcctagctgc ttttctcgaa tttcagctaa agttttacag tcaatacata aatcagctgt
     6481 tgggcgtgct tctaaacgtt taatcccaat ttctacacca caagtttcgc aaaaaccgta
     6541 gtcatcttct tgaattttgt ataatgtttg ctcaatcttt ttcagtaact tacgctcacg
     6601 atctcgatta cgtagttcta agctaaattc ttcttcttgg cttgcacggt catttggatc
     6661 agcaaaatta gtcatatctt cttgaagttg gctttttgta cgctcagctt cttccataat
     6721 ttggctatgc catgctttca gaattttagt gaaatgctca cgttgggctt cattcatata
     6781 ttcttcgtct tttttaagct cataaggctc aacgcctgct aatgctaata aaccgagtga
     6841 ggttttagcc gcttgagtca tagatattta ctccttgttc cctgtttatt ggaagtttta
     6901 ttgttaaaat tattgcccga atacagacta acttccttgt aaccgcacta tacgaaaaaa
     6961 tcaacatctt cgggttttaa ataatggcgg ctataaataa cacaaaaacg actcattaat
     7021 caaatgaatt tgcaaaaatt ttgcattcaa attgatttga ttgcacaaaa aaatagccga
     7081 acatccattc ggctattttt caaacacttt ttaccagctc tttgaccaat cggctaacca
     7141 tttttggata gtttcagtag tcggtggcgt aaattcactg gttttatagg ttggcattgc
     7201 cgcaaaagcc ggatcaacac cgtcggttaa aaccggattc attacgttgt ggtaagaaat
     7261 aatatgttgc gattccggtt tgtgcaaaaa ttcaagaaat tgatttgcca atgctttttg
     7321 ttggctgctt ttgacaatag ccgcattttc tacttgcacc aaatgccctt cctcaaacgg
     7381 agcagccaca tatttatcgg tgttttcgtg ccacttatga tataaaggcg atgtagtata
     7441 gcttagtacc aaatccgact cgccttttaa gaacgctcca taagtttcag accaaccttt
     7501 gcctaccgtt accgtatgtt ttgccaatgt tttccaagca gttggagctt catcaccata
     7561 cacttgattt acccacatta agaagccccg cccaacgctg ctggtacgtg ggtcttggta
     7621 aatcactttt aaatcttggc gttccaccaa ctcttttaaa ctttttggtg gatttttcag
     7681 cttctcttta tcgtaaataa aagcataaga acccgtgtca taagggaaga aaattttctg
     7741 ttgggtttct aatttggtct ttgcttcaaa ctcggcaaac aagccgcttt tttcggcttc
     7801 aggttgcagg aaattatcaa taccgaccac cacatcagct ttggtttttg ctccctccaa
     7861 acgcaagcgg ttgaacatcg ttacgctatc gtcaagcgga acaaatttga catcacagcc
     7921 acactctttc tcaaaattct gctctaattt aggagcaggt ccatattccg aagcaaacga
     7981 gctgtaagtg taaacggtta aggtcggttg attggcataa acacttgcac ttaataacgc
     8041 aagtgaagag aggataaatt tcataacaat tccttctaaa ttaaatgaat agaaggattt
     8101 aagaaaggca agttgctatc tcaaatccct acgctgatat taatcagatc aggttctatg
     8161 ggtatttctc agccacaagc ggttaaattt cggcaaaaat ttgcaaattt ttacgcaaaa
     8221 acaaccgctt gttgcacccc aatgagaacg gcttcattgt aaaaagtttg caggcagatt
     8281 tcaaccaaag caaacgtttg ctatttgtat taaaaatccg tatactaccg ccctagtcca
     8341 aacaaggaac tagaaatgaa ttgcacaaca tcggttaaat caaattccca acagctacgc
     8401 ttcaacttta gaggcgtagc tgtttttcta ttcatttcaa accattcaaa atcgctgtta
     8461 tagcgatttt ttttcgcacg cttgcaatta ccgcaagcgg ttgagccaca ttaacagaga
     8521 gaaaaggaat aaaaatgagc caattgattc gtaccctaaa aggacatatt cgtgatgaaa
     8581 tcatcaaaaa aggcggttgg gtaaatgcac acgcccacgc agatcgtgca tttacgatga
     8641 cgcctgaaaa aatcaccgtt taccaaaatg cgaatctaca gcaaaaatgg gatttggttg
     8701 atgaggtaaa acgtaattca agcgtagaag attactaccg ccgcttttcc caagcgattg
     8761 aattgatgat ttcacaaggg gtaacggcat ttggtacttt tgtggatatc gaccaagtat
     8821 gtgaagacag agccattatt gccgctcaca aagcccgtga agtatataaa aacgacatca
     8881 tcttgaaatt tgctaaccaa acgttgaaag gcgtgattga gcctaatgcg aaaaagtggt
     8941 tcgatatcgg ctcggaaatg gtggatatta tcggcggctt gccctatcgt gatgaagtcg
     9001 attacggcaa aggcttggag gcaatggata ttttaatgga taaagccaaa tcgctcggca
     9061 aaatgctcca cgtccacgtt gatcaattta actcacctaa agaaaaagag accgaacaac
     9121 tgtgtgataa atcgattgag catggtatgc aagggcgagt ggttgccatt cacgggattt
     9181 ccatcggctc gcacccgaaa gaatatcgaa aaatgcttta ccaaaaaatg cgtgatagcc
     9241 aaatgatggt cattgcctgt ccgatggcgt ggattgatag cggacgtaaa gaagatttac
     9301 agccgttcca caacgcttta acccctgctg atgagctgat tcctgaaggc attactgttg
     9361 ctatcggcac agataatatc tgtgattata tggtaccgct ttgcgagggc gatatgtggc
     9421 aagaactcag ccttttatca gcaggctgtc gttttactaa cctagaagaa atggcaaata
     9481 ttgccagtat caatggtcga aaagtactgg gtttagtcta actgaataaa cgaaaggcga
     9541 acccttaggt tcgcctttaa taacagcata accgattatt taaacaagtt acccaaaatc
     9601 ccttttgccg cttgagctaa taagtcattt gcatcaaagt tttttaagtc ttcaacatta
     9661 ccattcgggg ttaaagtatc cacgattttt ggcaagaact gggctaataa atcgctcgca
     9721 tcagcagcat caacacccgc ttcttgagcc acattttgaa tgttttcttg cccgaacaca
     9781 ttactgattt gttcgcccga aacaggtgca ttgtcttcat cgctgctgat ccaagtgcgt
     9841 aacacatcat ctaatccgcc ttgttggaat ttggcaatca gcccttcaat cccaccttgt
     9901 gaggcgagta aattttgaat taattgagtt gcagttgatt ggttattgcc actcaatact
     9961 gaagaagcca atgaacctaa aatatttcct aacataattt ctcctatgca agcggtacaa
    10021 ttttgcaaaa aaacagcaaa cttcgaccgc ttgtaatcac tttaacgagc taaaatggct
    10081 cgcactcttt ccaaatcttc cggcgtatcc acccccactt gcggggcttc tttcgccggt
    10141 tcgatatgaa ttttttcacc gtgccataag gctcttagtt gctcaaggga ctcaagctgt
    10201 tctaattgtg tcggctgcca cgccacatat tgtttcacaa aaccggctcg gtaagcgtaa
    10261 atgccgatat ggcgtaaata accttgagcg gcaacaaaac tgtcatcaca atccggaaaa
    10321 ctgtctctgg caaacggaat gctggctcgg gaaaaataaa gtgccattcc gtttttgtct
    10381 gccaccactt tcaccgcatt tgggttaaat agctcttctc gggtcgctaa tttcacaccg
    10441 agtgttgcca tattgacttg ataagcatct aaattttgag ctacctgagt aacaattacc
    10501 ggtggaatca gcggttcatc accctgaata ttcacaataa tttcgctgtc ggcaatctgc
    10561 attttttcga tcacttccgc caaacgctca gtgccggaat tgtgtttttc cgaagtcata
    10621 cagacttccg ccccaaaaga ttgagcgagg gcttcaattt cagggtgatc ggtggcaata
    10681 atcacacggc ttgcaccggc aagctgagct ttttcccaaa cgtgttgaat catcggtttg
    10741 cctgcaatat ccaacaacgg cttacgaggc aaacggctgg aagcgtaacg agcaggaata
    10801 attacagtga atttcatagg ctatccttat gcttcttgag catctaagaa acgttctgca
    10861 tccagggctg ccatacaacc tgtgccggca gaggtaatcg cttggcgata gttatgatcc
    10921 atcacatcac cggcagcaaa tacgccttcc acagaagtgg cagtagcatt gccttccaaa
    10981 cctgatttca ctttaatgta gccgttttca agttctaatt gaccttcaaa cattgccgta
    11041 ttcggtgcgt gcccaatcgc cacaaagaaa ccatcaacct taatttcttc gctcaattct
    11101 tctttggttg attttaaacg taagccggta acgcccatat tatcgcctaa cacctcatca
    11161 accgtacggt ctgtgtgcag aataattttg ccttcttcaa tacgtttttg cagacgacca
    11221 agcaagattt tttcagcacg gaagctatca cggcggtgaa ttaaatgcac ttcacttgcc
    11281 aaatttgcca aataaagtgc ttcttccaca gcagtattcc caccaccgac taccgcaacc
    11341 ggtttattgc gatagaagaa accatcacaa gttgcacaag ccgacacgcc tttgcctttg
    11401 aaatgctctt cagaaggcaa acctaaatat ttcgccgacg caccggtggc aataattaac
    11461 gcatcacagg tgaaagtgta taaatctccg tttagcgtga atgggcgttt agataaatcc
    11521 actgaatgaa tatgatcaaa cacgatttca gtttcaaatt tttcagcgtg cttgagcatt
    11581 ttgttcatta actctgtgcc ggtaatttgt tcaaattccc ccggccagtt ctcgatttca
    11641 tcggttgtag tgagctgtcc gccttgttgc ataccggtga ctaaaaccgg gtttagattg
    11701 gcacgggcgg cataaacagc agcggtataa ccggcaggcc ctgagcctaa aattaaaagt
    11761 ttggtgtgtt tagtggtcat aatgaatcct ctgaataaat attaatgttt attttagcct
    11821 aaatttcagt tcaactctat tttcgttttc gctcaacttt tttcaatttt gtgacaaagt
    11881 taacagaaat ccgactgtgt ttcttgtaaa ttgtgacagt ctaattcatt taaaaggggc
    11941 aaaaagatga aaaaattaat taattcaata gaaaccgtct tagatgagca actttctggt
    12001 tttgtgaaag cacattctga tttaacactt aacacagaac ctgtctatat ttaccgcaca
    12061 acgccaagta atcaacctaa agtagccctt atttccggtg gtgggagtgg gcacgagcca
    12121 atgcacgccg gttttatcgg taaaggaatg ttagacggag cttgccccgg agcaatcttt
    12181 acatctccaa cgccggatca aatgtttgaa tgcggtttag cggttgatcg tggcgagggt
    12241 gtattgctaa ttattaaaaa ctataccggt gatgtgctga attttgaaac agccaccgag
    12301 ctacttgcag atagcggtgt aaaagtcgca accgtgttgg ttgatgatga tgtggcagtc
    12361 aaagacagtt tatatactgc cggccgccgc ggtgttgcaa atacagtatt aattgaaaag
    12421 ctgttaggag ctgcagcgga taaaggctat aacttatccg aattagccaa attagggcat
    12481 cagttaaaca ataacgggca ttctatcgga attgccttat ctgcttgtac tgtgccggct
    12541 gccggtaagc catcatttac tttagctgaa aatgagatgg aatttggggt aggtattcac
    12601 ggagaaccgg gcattgaacg tcgccctttt gaaaatctgg atagtaccgt gaaacaaatg
    12661 tttgagacct taattgctca cggcgattat caacgtaaaa ttcgccattg gaatacacaa
    12721 acccaacaat gggacgaaat cgaagaaagc aaagtggcat tgaaaaaagg tgatcgtgtt
    12781 attgctttag ttaataactt aggagcagtg ccactatccg aactttatgc tgtttatgat
    12841 gcgttagaaa aagagtgcca aactttcggc ttaagcattg aacgcagtct tgttggatca
    12901 tattgcacct cgctggacat gcaaggtatc tctatcacat tactgaaagt ggatgaggat
    12961 attctcaaac tatgggatgc tccggtaaat acaccggcaa tgcgttgggg tgaataagat
    13021 tgaaaggata agttatgaca atatcaaaac aacagatctt aaaatggctt gaaaattgcc
    13081 aacaggtaat gactgaaaaa cgggattatt taaccgaatt ggataccgtt attggcgatg
    13141 gcgatcacgg tttaaatatg cagcgtggat ttagtaaagc acttgaaaaa gcccataccg
    13201 tgcaagataa agatatcggc accctgctta aaaccgttgg aatgacatta ttatcgcaag
    13261 tagggggagc gagcggccct ctctatggtt cattttttat taaagcggct caaggtgcta
    13321 caggcaaaga gcaactgagc tttaacgagt tactggcact tctacagcaa ggagcagaag
    13381 ctatcgtaca acgtggacac gcacaagttg gcgataaaac gatgtgtgat ttatggctgc
    13441 cattactcga agacttagct caagccgata gcactcaacc aattgctcaa atcttattac
    13501 aagcggtcga aaaagcagaa aattttgcaa atcaaaccgc tccattaatg gcgaaaaaag
    13561 ggcgtgccag ttacttgggc gaacgcagta tcgggcataa agatccggga gcaacgtcca
    13621 gctactatat ttttaaagcc ttagctgaag cattacagta ggaggggtaa atggttaatt
    13681 tagtgattgt ttcacatagt gctaaactgg cggaaggcgt gggggaaatt ttggctcaaa
    13741 tggcacaggg gggctgtaaa atcgcccttg ccggcggcat tgaggatacc tcaaatccta
    13801 tcggcactga tgcggtaaaa ataatgcaag cgattgaatc ggtatttagc ccagacggtg
    13861 tgattgtgtt tgtcgattta ggcagtgcaa ttttaagtac ccaaaccgcc atagatttac
    13921 tggagccgga acttgccgaa aaagtgatca ttagctacgc tcctttagtt gaaggtgctt
    13981 ttgctgctgt agttgcagcc tctgccggcg atagtttaga agcggtatta aatgaagcga
    14041 acgaagccgc tgctcttaag caggaacaag ccaattagta aaaatgccgt atcgaaaaat
    14101 acggcatttt agttttatta gtacaatagt gaataaagct gtcttctaaa tttcggcaca
    14161 atcgggtctg tacccagtgc agataagatt gccagaaatt ggctttttac ctcgccgttc
    14221 gctacattta aatccgattt taaccaatca aaaagtaacg tgagtgcttc ttcattttta
    14281 tgagcttggt gtagctgatt tgccaattta atcgcaattt caggggtttt gctgttcgca
    14341 taatccgctt gaagctgttg taattcgggc gattcgctgg cttgttccaa taattcgatt
    14401 tgggcttgca aaccgtgcca acggctgtct ctgtcttgaa tcgggatcgc tttaaggatt
    14461 tcacgagcct cttccacgct tttcattgca atgtaagttt cggcatagag caaagcgaaa
    14521 tcgctgtttt tcttatcggt catttcccac gctgatttca gcagcggcaa ggcttcggta
    14581 taacgctgat cttgcaataa ttccaaggct tgttgaaatt tcagctcttc ctctttcggt
    14641 aaaatatttg ccaaccgaat ccgtaattcc tgctcactta ctgcaccttg aattgcatca
    14701 atcggctgac cgccggcaaa caaatagagc gttggaattt gttgaatgcg aaattgagca
    14761 gccaatgctt gttgctcatc acaatttacc gtcgccaata aaaattggtt agggttttca
    14821 tccgaaatac gacgtagtaa ggcatccatt tccaatgaag ccacttccct tggcgaaata
    14881 aaatgaaaca ccgtcggcac ttgtgccgct gctgcccata cttcactaaa attctgctcg
    14941 tttacattta caaagtagtc catacaaaac cttcttaagc taaaaattac tttttatatt
    15001 gtagcattaa taagaagttt caataggtag cccgtttctc tcccacgctt caaaaccacc
    15061 ttttacacta taaactttct caaacccttg ttcgattaaa aactgtgctg tactttggct
    15121 actcactccg tgatagcaaa tcacaaccac cggttcgtca taatcgacct cgtctaaaaa
    15181 cttaccataa ctctggttgg ttaaatgaaa cgcatcctgt gggtggctgt aaacataacg
    15241 gcgggcatca cgcacatcgg caagcaccgc accttcgttt tcgattaatt cccaagcctg
    15301 ttgcgggcta atttctttaa atgtagtttc cataatcact ttccctcaaa aaacgtgcaa
    15361 ctataccata aaattctaaa aagaatggct attattccaa gttgaaaatt tgatgtttgt
    15421 cagatataat tgcaaactat tttcaaatgc actgatttaa aactaccaca gtttgaggat
    15481 tttatggagc aattatttca atttttagaa catcatactg actttgttat attaggatta
    15541 ctaggcttat taagcgtaat ctgcctttgg aaagctattg aacgtattat gttttattcc
    15601 aaagtagata tttcaaaata cgataccctc gaagaattag acatcgattt aacccacaat
    15661 ttaactacca tttcgactat cggctctaat gccccttata tcggcttatt aggaaccgtt
    15721 gtcggtattc ttttaacttt ctatcattta ggtcaatcag gtggtgatat tgatgcggcc
    15781 tctattatgg taaacctttc tttagctcta aaagccactg ctgtcggtat cttagtggca
    15841 attattgcaa tggttttcta caatggtttt ggtcgtaaag tggaagaaaa caaactgaaa
    15901 tggttggcat tacaatcaaa aaagcctcat caagcggtgt gatttagtcc attttttgca
    15961 aattaataag gcagaacaat gaaaaaattc gatgaaatca acatcattcc atttattgat
    16021 attatgttgg tattactggc tatcgtgtta gttaccgcct ctttcatttc tcagggtaaa
    16081 atccaagtaa atgtaccgaa agcaagtaca acacagccaa tgaaagcaga cgatttagcg
    16141 aagcttttaa ccattaccga aaataatgag tttttcttta atgatcaagc aataactaaa
    16201 gagcaattaa ttgctgaagt tgccacttgg gataaaagcc aaaaagtgtc actcaaagtt
    16261 gatggtgcag tcgccttcga aaaatttgtg gaattaaccg atatcctttc tgcaaatgaa
    16321 attaaaaatg tggcaatcat tactaaaaaa gaaactgctc cagcaccttc aagcacacct
    16381 ggtagccctg cacaagtgcc agcagtcgca ccttaaatag ggtaaacagg tatgaaaaaa
    16441 aaacattctc gtatcggctt attggcatct ttggctattc acactgcctt aattggtggc
    16501 acttttgctt ggttacataa ccacaaagtg gaaaaaattg ccgagcaaaa ctctctttct
    16561 atggaaatgg tggcagcatt attagagcaa cctcaggttg ccgttgctcc ggatcctatt
    16621 accgaagagg tcaaagaaat cgaaccggag aaggcagaag taccacctga acctaagctt
    16681 actccggagc caactccaga gccggaggca attccagatc ctacgctaaa tccgaaaaag
    16741 gaaaaaccga aagaagaaaa gcgtaaagag cgacaccacc ataaacataa gcatcgtcac
    16801 aaagagaaaa gggaagaaga aaaaccgaaa gataagccta aagagcgccc gaaacatcat
    16861 cacaagcata ttaaagcatt agagcgcggg ccagagataa aacaaggtat tgtcgccaaa
    16921 gcgattccaa atgcggctga aggtgaaaaa gtggttgcgg gggttgttgg agggcaaaaa
    16981 aacggttcac caaattcaac ctcaactaca ggttcagcaa atactggggc tagcagtggt
    17041 aatgccagtg aacttgctgc ttataaagtc gcattacagc gagcattaca gcgtaaggcg
    17101 aataactctt accctcagcg tgaaaaaatg atgcggaaaa ccggtacagt tacgattaaa
    17161 tttaccgtta catcgtccgg ttcaattaca aatgtatccg tactcaattc atcgggaaat
    17221 agtaatttag ataacgctgc ggtacgcagt gcagaaggtt tgagtatgcc tccgccaccg
    17281 gcaggcttcc ctcctacggt aacagtaccg gtaagatttg cccttgaata aaaacagccc
    17341 tcaaaagcaa tgtacttttg agggcttttt attgcaaaaa attgactaaa aatgaccgct
    17401 tactgcttgc gaatatcgcc atttctcaca ttcggactca cttcacccgt acgagtttct
    17461 gtgcttaacg aggtagaatt tactttcgta aaagtataat ccgctttgct gaattcacct
    17521 gtttgattat ttaagaagaa attgcggtac tcttttaccc ataatgccgt tgcgccacaa
    17581 actgccacag gcataactac taaattcaca aatggaatca tcgtgaatag gctcactaaa
    17641 gcaccaaagg taaaatttaa agtgcgagac tgcgacaacg catttcgcat acgctgaaaa
    17701 ctgattttat ggttatcaaa cggatagtca caatattgaa tggcgatcaa ccaagcaccg
    17761 aagataaaag tcagcacagg tgctacggtt tgcccaacca caggcaaaaa gcctaataca
    17821 aaaagagcaa tcagccttgg aatgctatac atcatttttt gccattctcg tttcagcatt
    17881 cgaggcacat cttttaacat tgcaccgaat gacatatcgc ccaaaggctc tccggtaagt
    17941 tgcagttcga ctttttctgc taataacgca ttaaagggag cagcaacaaa gttagccaag
    18001 gtagtaaaag caaaataaaa tcccactaat atcatcaaaa aaatcagtgg aatcagtaca
    18061 aagctaagcc attccagcca gcttggcagt aacatatcca acaagccacc gatattggca
    18121 aaaaatcccc aaatcagccc taccatcagc acggtattaa taagaattgg gaaaatcaca
    18181 aaaggcaaaa attgacgttg taacaataac cgccagccat atataaaata atgaaagcct
    18241 aatccgactt gattttgcgg ctcagaaaaa actgaagaca taatgattcc ttattttcta
    18301 tcaaaattaa ttagaaatat ggtaagctac gcacattatt ttcgcaaata tgaaaataca
    18361 ttttttattg attatttgat aaagaggaca caatggaact gcatattatt ttttttattc
    18421 ttgccgggct actgattgct gtactaattg gatttagcct ttggtccgct cgtcgtgaaa
    18481 aatcaaatat tttttcaaat acattctcga ccagacctat tgctgtgcca ccacagaata
    18541 ataaaatgag caatagcatc ccaacctcat tacagccaca aaatgaggat tatcaagcaa
    18601 tgtctgtgcc ggaagaaaat ccgcaacaga tacaacagga agttgaaagc tcgctgcaaa
    18661 atatcaaaat cagtttgccg ggcggaaatc ctcagcaaca gcctgagcaa attcagccga
    18721 tacaatcggt agcagaacca acagttagca cttacgatca gaaaatttct aatcagcaac
    18781 atatccaata caatacgccg gattttgcaa acccaatggt gaacacagtg gtggaagaaa
    18841 cacctcaagc agtagctatc gaacctcaag aaacccaatc ggcagaggaa gaaaatccat
    18901 ttgtaaccct ctatctttac gcaccacaaa atgaagcttt ccgcggtgat tttgtagtac
    18961 attatttaga agaagttggc ttacgttttg gcgaacacca aattttccac cgccatcaac
    19021 atattgatga ttcattaagt ccgattattt tcagtgcagc aaatttaatg aacccaggaa
    19081 cctttgattt aaataatatc tcaaactttg cgacagctgg tttagtgcta tttatgcaac
    19141 ttccaaccga aggcaatgat gtggctaata tgaagttgtt aatcagtaac gctgaacact
    19201 tagcagcatc gttaggggga ttcttatatg acgataatca acagcctttt ggcgaagaat
    19261 cccgccaacg ttatatgcaa cgtgtgatgc actaattgcg aaaaaattaa taaatccgac
    19321 cgcttgtaca agcggtcttt tttgtagaga attttaccaa tgtctttatt taaccaaacc
    19381 tctttatttg aagagaatgc cacgcccgag ttagtcgaga aaatcgaaac tattcgccaa
    19441 acattgcgtc aatacgagta tgaatatcac gttttagata acccaagcgt acccgatgcc
    19501 gaatacgacc gtttaatgaa cgagctgaaa aatctggaat ggcagcaccc ggaactgatt
    19561 agtgccgact cgccgactca acgggttggt gccaaaccgc tggcaggctt tgctcaagtc
    19621 acccacgaaa tccctatgct ttcgttggat aatgccttct ccgatgaaga cttagacggc
    19681 tttttacgcc gtatggaaag ctatatcacc gcctctcctt cgcaactgga attttgttgc
    19741 gaacctaaat tagacggctt ggcagtgagt attttatacg aaaacggtat acttacccga
    19801 gctgcaaccc gtggcgatgg cacaaccggc gaagaaatta ccgctaatat ccgcaccatt
    19861 cgcaatattc cgttaaagct caacacgact aatccacctg ctcgattaga ggtgcgaggc
    19921 gaagtcttta tgccacaatc aggctttaat gagctgaatg agaaagcctt agctaaaggc
    19981 gaaaaaacct ttgccaaccc tcgcaatgcc gcagcaggtt cgcttcgcca gttagatccg
    20041 aaaatcaccc gccagcgtcc gttagtgctg aatgcctacg gaattggggt gtatgaaagc
    20101 gatgacgaac tgccagccac ccatttcgaa cgtttgcaat ggctgaaatc gcttggtatt
    20161 cctgtaaata atgaaatccg cttggttcaa ggcaaagctg ctctcttggc ttattatgcg
    20221 gagattcagg ctaaacgccc aacattaggc tatgatattg atggcacagt attgaaagta
    20281 aatgacattg ccctacaaga gcaactcggg tttatctctc gctcctctcg ttgggcgatt
    20341 gcgtataaat ttccggctca agaagaaatg acaatcctca aagaagtgga cttccaagtg
    20401 ggaagaacag gggcaatcac ccctgtggcg aaattagagc ctgtttttgt cgcaggcgta
    20461 acggtaagta acgcaacgct acacaacggt gatgaaatcg agcgacttgg tattgtgatt
    20521 ggcgatacgg taattattcg ccgagcgggc gatgtaattc cgcaaattac aggcgtggtg
    20581 ttagaacgcc gcccggaaaa tgcaaaaaaa attgaatttc cgaccgcttg tcctatctgt
    20641 cactccgctg ttactcgggt agaaggcgag gcagtagcac gctgtaccgg tggtttattc
    20701 tgcgaagctc aacgtaaaga agccttgaaa catttcgttt cacgcaaggc aatggatatt
    20761 gacggcgtag gcgaaaaact aatcgagcag ttaatggctc gagagctgat tgaaacgcct
    20821 gccgatctgt ttaagctcga tcacactacc ctaatgcgat tagagcgaat gggggaaaaa
    20881 tcggctcaaa atgctctcaa cagcatcgaa aaagcaaaaa acactactct tcctcgcttt
    20941 ttattctcgt taggtattcg tgaagtgggc gaggcaaccg ctctcaactt agccaaccat
    21001 tttggtagct tagaggcgat ccgccaagcc acttttgagc aattaaaaga agtgcaagat
    21061 gtgggcgagg ttgttgccaa ccgtattgtc agcttctggc aagaaccgca taatgtggaa
    21121 gtggtggaag atttgatcgc tcaaggtgta cgttgggaaa acgttgtgaa agccgaaatt
    21181 gtagataacc cgttaaaaga taaaaacgtg gtcttaaccg gcacactaac ccagctcacc
    21241 cgtgatgaag ccaaagccct attacaaagt ttgggctgta aagtctccgg ctcggtttcc
    21301 agcaaaaccg attacttaat cgccggcgaa aaagccggtt ccaagctggc aaaagctcaa
    21361 gagttgggaa ttcagatttt aagcgagcaa caatttattg agcttactca acattaacaa
    21421 acaaaggggc agatgattga aatctgcccc ttattctatc tattgaatgc ttaaaagcat
    21481 taaccaatca atttaaactg ctgagctaaa aacagtaacg taaagctagt taagtaaatt
    21541 aagccgataa ctgccaacca aaataaccag ccttttgcac gatgctcacc ttttagcact
    21601 aaagagaaat ttaaccacgc aaaaacaggg gtagaaacaa atgatgaaat cattgcaaat
    21661 tgtaacattt tcgccacatc actcataaat tggctaataa ttaaaatgcc gatgagtgca
    21721 gttaccgtca tccaaatact taattctgtt tgtgaatgtt gcttacgccc gctaattaaa
    21781 cgcaacgctt ctgcattcgc tcgtgaatat ccatcaataa cagtgatcgt tgtgccgaac
    21841 atacacataa atgcaataaa tgcgattaaa agcttagacc agtcaccaat cgcaaaagca
    21901 tacattttga ttaattgagc aatataggca acaccggctt gttctacttt ctcacctgaa
    21961 ccgtactgaa ctaacgcacc taatgctaaa aaaacaatcg ccaaaattgc cgtgccgata
    22021 taacccacat taaaatcaaa aataccgtcc tcataattca ctttacttaa acgttttttc
    22081 gcaataaccc acattgagtt aatggcagaa atttcaattg gtgcaggcat ccagcccatt
    22141 aatgcaacga tgaacacaag tgctgctaaa ttccacggcg aaggctctac gaaatctgga
    22201 gcaatttcaa cgccaccttt taaagcagca atgatcacgg cagataccgt agagatggtt
    22261 aaagcaatca taatccattt agataatgta tctaagaatt tatattgccc tagaagtaaa
    22321 ataccccaag tgaccacaat cacaatagtt cctgccattg gaatgcttaa atctaacgga
    22381 atacctaaag cagaaaaaat aaattttaga atcgctgctg aaacaatcgc caccgcagct
    22441 gtgttaatca ttgcagcaaa aacgttaagg ataaagaaaa taataagata aaactttcct
    22501 ttttctttgt agccttccaa taaagtttta ccgctagcta aggtatattg cacaccaaag
    22561 cggaaaaacg gatatttaaa taaattggct aacagaataa taatcgccag ctgccagcca
    22621 taaatcgcac cagattgtgt agaggcaata atatgcgaac cacccactgc cgcagatgcc
    22681 atcaaaatcc ccggccccat tgcagcaaat ttactttgcc aagttgaatg ttctatttgt
    22741 tgtgtcatat agctttcctt atcacattac tatcaaaaca agatggtttc attctactta
    22801 ta
//
LOCUS       DANLUT010000016        22451 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLUT010000016 DANLUT010000000
VERSION     DANLUT010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22451
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            42..473
                     /locus_tag="PXB38_000572"
     CDS             42..473
                     /locus_tag="PXB38_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL5352927.1"
                     /translation="MSEFESVEHYLPESVKEIVDLIGLSATEKLIKAFGGFSFQFSKG
                     KVYFEKLKDVLGEEDAEKLYDYLRSNIAYLPRCQTALRLLRNERIYTDYCRMTEQEGI
                     SGRLAIMQICSKYGVSDRIAWDAVRYLKSKPKQPITQTSLF"
     gene            559..1092
                     /locus_tag="PXB38_000573"
     CDS             559..1092
                     /locus_tag="PXB38_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5352928.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            1095..1337
                     /locus_tag="PXB38_000574"
     CDS             1095..1337
                     /locus_tag="PXB38_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5352929.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFISWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKKDRTKGDEE"
     gene            1334..1693
                     /locus_tag="PXB38_000575"
     CDS             1334..1693
                     /locus_tag="PXB38_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5352930.1"
                     /translation="MITQQIVGFIGVIGTVIAYAFFKGWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAQIQQKHINETRRIQPSAVDERLHQHGYFRDDYGLHGVRSDLSEP
                     CGHNGNETPSACTQSDL"
     gene            1708..1863
                     /locus_tag="PXB38_000576"
     CDS             1708..1863
                     /locus_tag="PXB38_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352931.1"
                     /translation="MKLIKTLRQRWQQWRFYRRRPDLAELHNVVRAAAAQGNQHPVGR
                     AKRGRYD"
     gene            1856..2113
                     /locus_tag="PXB38_000577"
     CDS             1856..2113
                     /locus_tag="PXB38_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352932.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            2113..2367
                     /locus_tag="PXB38_000578"
     CDS             2113..2367
                     /locus_tag="PXB38_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352933.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            2375..2875
                     /locus_tag="PXB38_000579"
     CDS             2375..2875
                     /locus_tag="PXB38_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL5352934.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKANAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTKMTTEAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDDLEVQ
                     FKKEFK"
     gene            2875..3021
                     /locus_tag="PXB38_000580"
     CDS             2875..3021
                     /locus_tag="PXB38_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352935.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACILGAIKLMLNGTDGWGWLLLI
                     AVCL"
     gene            3025..4650
                     /gene="terL"
                     /locus_tag="PXB38_000581"
     CDS             3025..4650
                     /gene="terL"
                     /locus_tag="PXB38_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5352936.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVEKPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLNRVLSTKGWKKAHFKAILRFPDNMALW
                     DEWENIYLSEEGDDDTLSDLFYQQHKAEMDKGAVVSWLARPILYLMKIRASDGHSSFD
                     SEYQNDPVSGDDAIFANSIQYWTELPENLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            4719..6392
                     /locus_tag="PXB38_000582"
     CDS             4719..6392
                     /locus_tag="PXB38_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL5352937.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDAENGDITAQHELFMDIEERDSTIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDFVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKVDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGLPIPTQWAMDKLGIPEAQEGEAVLGRVAPLPTSGQAVGLSAHFVKSPPNPLFVK
                     EGEQITGCSCGCGGKVQALSAQPQTGIKEQDALDSLANEAFAVPDFNKQFDPITKKAV
                     AVVMACSSYDEAAEKLAAAYPDLVSEEHERYLANALFLADLLGAANAES"
     gene            6379..7668
                     /locus_tag="PXB38_000583"
     CDS             6379..7668
                     /locus_tag="PXB38_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HDL5352938.1"
                     /translation="MQKVNFAIGLEPKQAIEFLRQKKLLANKVFKQELFDSALGRATT
                     ISKLTSLEMTRDIYESMEKARREGKSFNEWKKTLTAEFERKGWVYGHDKAISRGIDGK
                     LLADPKTGEHFGTPRRLNTIYRTNMQQAYSAARYQRYMDNVDNRPYWQYSAVGDQRTR
                     PAHQALNGKIYRYDDPFWATFYPPNGFNCRCTVIALGERDLKRKGIDEVGSSEPFLVK
                     AKRPKDKLGNQEETIGFKLPDGTVRLADKGFDYNVGRLTYKPNLDLYPEKLAHQFAKA
                     EMNGGEFKQAFKKLEDAVNQAKGSHKKLSADEMVKVRNALNQNFKFAAGRLSEETQKQ
                     IDSKVGTVWLSDDTLIKQFNSREGQNFDVSDYANLPDIFNNPLKVELDERDGWRFYAE
                     LNGKRYFAVIKVLAQYNEIFVQSFRLVSDKQWAKVFN"
     gene            7816..8232
                     /locus_tag="PXB38_000584"
     CDS             7816..8232
                     /locus_tag="PXB38_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5352939.1"
                     /translation="MIEIQINGIDEIIATLNRIATKTKDKTDLMRNIAGTMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(8229..8447)
                     /locus_tag="PXB38_000585"
     CDS             complement(8229..8447)
                     /locus_tag="PXB38_000585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352940.1"
                     /translation="MRKKSNGEQLPQVANFQKKVTAYIKQEMQPILKRFKSVLKNFKK
                     VGMINRTIKNKNATESDLGAICGDYLIA"
     gene            8491..9558
                     /locus_tag="PXB38_000586"
     CDS             8491..9558
                     /locus_tag="PXB38_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL5352941.1"
                     /translation="MFKQKFKLNPIALSFKLNQEANGRIQLCPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSRF
                     APFLTPKEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYAELA
                     KEKGNVVALSAKVNNPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKEWAENLGKQNLVALSDFLKTVTPNPALAGTQSGGEDPNKGAEKVALSAAEIA
                     TAKTLGLTPDEFAQKYKEEAK"
     gene            9558..10475
                     /locus_tag="PXB38_000587"
     CDS             9558..10475
                     /locus_tag="PXB38_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL5352942.1"
                     /translation="MFKKSELLKALDTAFKKEFGAGLALIKPQWEMVAMKISSSTKTN
                     TYGWLGQFPKMREWVGKRQIKKMQAEAMSIDNKTFESTVSVARTDIEDDQVGLFTPIV
                     QQAGQSAAELPDDLVFGLLAKGKETLCYDGQNFFDTDHPVYENVDGTGTSKTQSNITT
                     GAASGKPAFYILDDTNAIKPLIWQERTKPEIETKFDPSKSDTVFMEDEYLWGVRARGN
                     AGFGFWQLIHRVENSELNAETVMAVIAKMRMLKGDGGKLLNIRPSTILVPPTLEYAAR
                     QLVEADIINGTSNPLKGVLKVAVSAQIAE"
     gene            10521..10838
                     /locus_tag="PXB38_000588"
     CDS             10521..10838
                     /locus_tag="PXB38_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352943.1"
                     /translation="MMSRKKKDDETLNPKENTPPEDKVEEQPKPPEEETKPDDGAVID
                     PIAFEIKLKSIHPQATYGRCGYRFNKETAVEIARADLTDEQIITLANDPYLEFVPVVE
                     GDA"
     gene            10838..11263
                     /locus_tag="PXB38_000589"
     CDS             10838..11263
                     /locus_tag="PXB38_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5352944.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            11260..11901
                     /locus_tag="PXB38_000590"
     CDS             11260..11901
                     /locus_tag="PXB38_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL5352945.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            11902..12081
                     /locus_tag="PXB38_000591"
     CDS             11902..12081
                     /locus_tag="PXB38_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL5352946.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            12081..13490
                     /locus_tag="PXB38_000592"
     CDS             12081..13490
                     /locus_tag="PXB38_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5352947.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEIAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEIGNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGAVIAGEEDPARPLNTLEVKGLTVVDDSQKPLFSEVNQ
                     ALYHGLSPIEVVASRVQITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQR
                     LRFPRAKNSHRIVAKVRSEILDVLYQLESEEVIENVEAWKNRLLVVRNQDPTYLDLEI
                     PADVVNGLHVIRNKITLIL"
     gene            13501..13875
                     /locus_tag="PXB38_000593"
     CDS             13501..13875
                     /locus_tag="PXB38_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5352948.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYSQGIAEYTLSVTAVEPQDGTVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSE
                     SYTVDGESVRDIQLNALRKVNE"
     gene            13875..14243
                     /locus_tag="PXB38_000594"
     CDS             13875..14243
                     /locus_tag="PXB38_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352949.1"
                     /translation="MKITLNFGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLAPEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            14273..14461
                     /locus_tag="PXB38_000595"
     CDS             14273..14461
                     /locus_tag="PXB38_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352950.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            14514..16793
                     /locus_tag="PXB38_000596"
     CDS             14514..16793
                     /locus_tag="PXB38_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5352951.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTTEKAFKNTERAAQQSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVRAENAIQREIEQTRA
                     AYDRLKRSGVASQNELRRASEATKKRVQELNAELGKTSFGDKAGSFGRGLMGAGVGIA
                     AGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRIDGKRELLDAVQKAVSVGGGSK
                     EEALSSLDALLASGAVSTETALNLLPTLQKGAVATGASANDMAQIAISSMQQFGIKEE
                     DIGRVLDMAVAAGQAGSFELANMASWLPQQMAAAKQAGLSGIEGFERLLIANQQARVT
                     AGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKTGKTKAIDFAKAMEHYKGKGQD
                     SLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEDQKRLFNELTNLVEGTAIGEIISDRQ
                     ALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIRDTNSHKVEALKNATEFAQMEN
                     FEKVNGVLGTLAEHLTSYANQYPNLTQFVSGATDAVKIFGAALAASSVLDLLTGKKGN
                     DGGMGDLFDKSSKATGSKGKVSKFLSVGGSFASVAGVATMLHGDQAPMSEERKAQLND
                     PNYQARQMYEYKKEILGSRFHSFFRSNETLEQYRKDVSAYEAKQKNGNTMGAVQGVLS
                     TIPSLQELRPKVDSVTQTLSTYQADFQAFGATLSAGIEAGLASQSHTIANQITVELDG
                     SVVAEKVAEYQFNFNKRMA"
     gene            16793..18085
                     /locus_tag="PXB38_000597"
     CDS             16793..18085
                     /locus_tag="PXB38_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL5352952.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVIEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAIEDSLITKIDRLLLDLENLFDDGLRFWDSVA
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLKDGSGALHQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAVDNIQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELIEDREEELLIGDLELINQIVREHWLNIINKLREQQKHA
                     QKGIMSDKTKSIYETAEKLINRIRNVAHQFTVLVLAVINKKPPLTVRMVMDSGTIHKV
                     AHYFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            18088..19215
                     /locus_tag="PXB38_000598"
     CDS             18088..19215
                     /locus_tag="PXB38_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5352953.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            19220..19867
                     /locus_tag="PXB38_000599"
     CDS             19220..19867
                     /locus_tag="PXB38_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005711896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5352954.1"
                     /translation="MRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSAL
                     ADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLNDGEV
                     AIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQGQ
                     ISGNGGMAVQGGEGASFSGNVNQTSGSFKTSGDVTAGTVSLKNHTHQSDGRGKPN"
     gene            19976..20326
                     /locus_tag="PXB38_000600"
     CDS             19976..20326
                     /locus_tag="PXB38_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL5352955.1"
                     /translation="MDREISPLTRDYTSDNIATLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            20339..21400
                     /locus_tag="PXB38_000601"
     CDS             20339..21400
                     /locus_tag="PXB38_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5352956.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDATLLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
     gene            21400..21966
                     /locus_tag="PXB38_000602"
     CDS             21400..21966
                     /locus_tag="PXB38_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL5352957.1"
                     /translation="MVTINSKHGKALGGLLPPVSYDPNGRWLALSLEVEGRELDRIDA
                     RAKTLIDAVDVSTGIFIDDWERVCGLTANSSLLLETRIERVIAKLNQLGGLSISYLME
                     QAKALGYEFKIHEPEPFRCGINRCGDRLWDKDVIWMFFVDFNRAENTDPYLPAPVIKT
                     PQALKLLLDEIKPAFTRYWVRDFTAWNN"
     gene            21967..>22451
                     /locus_tag="PXB38_000603"
     CDS             21967..>22451
                     /locus_tag="PXB38_000603"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5352958.1"
                     /translation="MRQTMNPITTDNGRFKDGNPATGEYGTVVTAEHMNNVQDSVISM
                     QNEIITVLNEAGIAVNPNDNTQLWQALQMIAGQVESIADLRQFEPVKDRQVVFVKAYH
                     TGSDKGGGYFVSDFADTVSADNSVTLFVTANGKRWKRLYSTLNIFDFGVSLDSVNNDA
                     I"
BASE COUNT         6552 a         4297 c         5690 g         5912 t
ORIGIN      
        1 ttggataatg gcttttgtgg aaattattca aggggatttt tatgtctgaa tttgaaagtg
       61 ttgagcatta tttgcctgaa tctgtaaagg aaattgttga tttgattggc ttgtctgcaa
      121 ccgagaaact gattaaagcc tttggaggct tttcgttcca gttttccaag gggaaggttt
      181 attttgaaaa acttaaagat gtgttaggag aagaagatgc agaaaaatta tacgattact
      241 taagatctaa tatagcttat ttgcctcgtt gccaaacagc cttgcgatta ttgcgtaatg
      301 agcgaattta taccgattat tgccgaatga cagaacaaga gggaataagc ggtcgtttgg
      361 caattatgca gatttgctca aaatacggtg tgtccgaccg tattgcgtgg gatgccgtaa
      421 ggtatttaaa atctaaacct aagcaaccta ttacgcaaac atcacttttt taatttgtgg
      481 aactctttca tctcccctat cttacattaa atcattaaag tctctttaaa tcatcattga
      541 atttaaagag gcttttttat gactgaacct atcaaaaaca aggcaactat tgctgacttt
      601 aaccttgcat ttgaccgtct tatcggacac gagggcggtt atgtgaatga cccgaaagac
      661 cccggtggcg aaacgaattg gggtatcact atccatactg cccgtgcgaa tggctatacc
      721 ggctctatgc gtgcaatgag ccgtgcggat gcgaaaacta tttacctcaa agccttttgg
      781 caacgttata actgtgagca gttcccgcct gagttggctt ttcagttttt agatgcgtgt
      841 gtaaaccacg gttcgggcaa tgctagccga atgttacagc gagcagtagg tgtggctgat
      901 gacggcatta tcggcaaagt gactttggct gcgattgagc gttattcagt ggctgatgtg
      961 ggcttgcttt tccaagcgga acgccttgag ttttacacca agctcaaaca ctttgaccgt
     1021 tttggtagag gttggattaa ccgaatggcg ggcaatttgc gttattttgc caaagacacg
     1081 gtggaggaat aatcgtgaaa caatttttac ttgatttaat taccaataaa gacggcacag
     1141 ccagcacgac tggttttatt cagtttatca gttggctggt gctgtcgggc attttaattc
     1201 acgcctacct ttacgataag ccgtttattt ccgactggtg gtttgcttat gccggtattt
     1261 gtgtgctggg cagccctgcc acaaaaggcg tggtaagtgc gttaaaaaaa gaccgaacaa
     1321 agggagatga agaatgatta ctcaacaaat tgtcggtttt atcggtgtga ttggcacagt
     1381 aattgcctat gcgtttttta aaggctggca attaaagcag gagcggaaac ttaccgctac
     1441 attaaaggcg gaaaagcagc aacaagcggt cgaaattcaa caaaaaaatg cagaggttaa
     1501 aaatgctcaa attcaacaaa aacacattaa cgaaactcgc cgtattcagc ctagtgccgt
     1561 tgatgagcgg ttgcaccaac acggttactt ccgtgacgac tacgggttgc acggcgttcg
     1621 gtctgattta tccgagccgt gcggacacaa tggaaacgaa acgccaagtg cttgcacaca
     1681 atctgaccta tgaggaagtt tgccagaatg aagttaatta aaacactcag acagcgttgg
     1741 caacaatggc gtttttaccg ccgccgacct gaccttgcag aattgcataa cgtggtgcgt
     1801 gcggcggcag cacaaggtaa tcaacacccg gtcgggcgag ccaaaagggg gcgttatgat
     1861 tgatgaaaaa ctgtttcaga tgctgatctc ttttgtagtt gctccgttag tggcgtttgt
     1921 aggcaaggtc atatttgatc gtatcaaccg caatgagcaa acggtaaaag agctaaaagc
     1981 agaaatggag agcaaatatc aatccaaaga gcttgcccac gaagtgaata gagggattaa
     2041 ggaaaagcta gacgatattt tagactcgct caaagaagta aaccaaaaac ttgataaaaa
     2101 ggcggataag taatgagccg taaaaaacaa aagcaaaccg attcggaaaa attagacctg
     2161 attttaggtg gattaaatga gcttaacgat aaggtggata aacaaaacga agaaatcgaa
     2221 cgcttacacc gtgaaatcca agcgactaat cgtttagtga atgaaatggc acgcaaaaac
     2281 cgccgtgatg ccgtggttgc cggtggcttg ggtggcggca ttgttgctgt gggttttgag
     2341 ttgttacgcc tgaaatttgg aatgtagagg gcgtatggca cacgatgttg aagtacaaaa
     2401 agcggttagg caagcctatg tgtttgaccg tttaagcctc gaaatggcag ccgagcgtgc
     2461 cggtgtgtcg tttggcacag ctcgccgttg gaaagccaac gctgaaaaga acggcgataa
     2521 ctgggaaaaa gcccgtgatg tgcaagcaat ggcaagtggt ggcattgaga atatcgctca
     2581 aggcttgtta gccggttttt taattaagta ccgcacgttg atgacggagc ttgaggaaaa
     2641 cacgaaaatg accactgagg cgaaagtgga agcattagct gctctggctg attcgtttgc
     2701 gaagatgacg gcatcgagca agaaactatt gcctgaaaca agtgcaatgg caaccgctat
     2761 gcgtgcgatt gagatgatgg cgaatatcgt caaaaccaag aaaccgcatt tattacctga
     2821 ctttttagaa atgctggacg atttagaagt gcagtttaaa aaggagttta agtaatggct
     2881 aagaaaaaac aaactgtggt gcataagcat tactctttcc gttggattgt ccaacttgct
     2941 tgtattctcg gagcaataaa actaatgctc aacggtacag acggttgggg ctggttgttg
     3001 cttatcgcag tttgtttgta atttatgaaa atcaaagaat ttgaaaaaga actggaagaa
     3061 ttacggcgac agttacaaca aaacatcgaa gcgagttttg agggttggga cgataaacca
     3121 caagccatta gcgaacgccg ccaaaaggtt ttagaccctg ttcacggctt tgagtatttt
     3181 gtgcaggctt attttccaca ctatgtgcgg tctgaacata aatcacagtt gcatcattat
     3241 ctctttgaga atttaccgct ttcggtaagt gatctttcta agtcagtccg ccaagcgatt
     3301 gcagcccctc gtggcgaggc aaaatcaacg atttgtacgc aattattccc gctgtggtgt
     3361 ttagtccgtg atttaaaaag atacatcatt attgcgatgg acaccaaaga acaggcatac
     3421 agtatgcttg aagctattaa agtggaaatt gaatctaacc ctcgtttaag aattgatttc
     3481 ccggaggttg cacaaggcaa ggtttggcgt gcaggtgtca ttatgacggc taaaaaacaa
     3541 aaagttgaag ctgtgggggc tgggcaaaaa ttgcgtggtc gtcgccacgg agcttatcgt
     3601 ccggatttag tagtgcttga tgatattgag aatgatgaaa gcgtagaaaa acctgcacag
     3661 cgtaataaat tgcataactg ggttttaaaa gcagttttaa aacttggtgc tgcaggtgaa
     3721 aagtttgatg taatttatgt cggcacaatt ctacattatg acagcgtact taaccgagtt
     3781 ttaagcacca aaggctggaa aaaagcccat tttaaagcga ttttacgctt ccccgacaat
     3841 atggcgttat gggacgaatg ggagaatatc tatctttctg aagagggcga tgatgacacg
     3901 ctttcagacc tattctatca gcaacataaa gctgagatgg ataaaggggc tgtcgtttcg
     3961 tggttggctc gccctattct ctatttaatg aaaattcgtg ctagtgatgg gcatagttct
     4021 tttgactccg agtatcaaaa cgaccctgtt tcgggtgatg atgcgatttt tgccaatagt
     4081 attcaatact ggacggagtt gcccgaaaac ttaatctatt ttggggcatt agacccttca
     4141 atgggtaagg ctggagcaag ccgagaccca tctgcaattt tggtgggcgg ttatcaccgt
     4201 gagagcggta agctctatgt ggttgaggct caaattaaaa aacgattgcc ggatttaatt
     4261 attgaggacg tgattagact gcattcgcaa tataactgtc accgctggtt tgtggagacg
     4321 gtgcaatttc aggagttttt gcagacggaa ctggtcaagc gttctgccca gcgtggtaag
     4381 ccggtgccgg caacggcaac caagccgaac agtgacaaga tgttacggat tgagagcttg
     4441 caaccgcata ttgccaacgg tttgattttg ttgcaccgct cgcaatctac gcttgaaagc
     4501 cagcttcgcc attttccgaa agccgatcac gatgatggtc cggatgcgtt ggaaatgtta
     4561 tggcgaaatg cactcagcag ctctgccccg attgagtggg agagtgtaga tgattttgac
     4621 ggtgagtatc gcagtaagtg gcggcattaa tgtaactccc ctctttgcta aagaggggga
     4681 ctatattgag cgtaactaag ctctggaaag gaaaatttat gagcaaaaag aagcataaca
     4741 agcagattaa accgaattta aacccgatta aaaatcaaga attgcagacg gatttagccg
     4801 aaattaccgc tacaggtcgg gtactctccg accatccgag caattttatt acccctgcta
     4861 aaatgaaagc gatttttgaa gatgcggaga acggcgatat taccgcccag cacgagctgt
     4921 ttatggatat tgaagaacgg gacagtacga tttttgccaa tatccaaacc cgtaagcgtg
     4981 ccgcattagg cgtagattgg gcgattgttg cccctcgcaa tgccacaccg caggaagaaa
     5041 aactgcgtga tgaggttgat gagttatttt atcagctcgg caaccttgaa gattttgtga
     5101 tggactgtat ggacgctgtg ggacacggtt ttgctgccct cgaaattgaa tgggcgttta
     5161 acggtaaatt gtggtatccg aacgccttta tccaccgtcc tcaatcgtgg tttaagtggg
     5221 ataaggtaga taatctgttg ctgaaaaccc gacaaaatac cgaaggtgag ccattacgag
     5281 aatttggctg ggtggtgcat acgcataaat cccgctccac acaggcggca cgcaataatt
     5341 tattccgctc gctggcttgg ctgtatatgt ttaaacacta ctctatccac gactttgccg
     5401 agtttttgga gctgtatggt atgcctatcc gcattggtaa atacggtgca ggggcaacac
     5461 caaacgaaaa acaaacgctt aaacgtgcat tagcggaaat cggacacaac gctgccggaa
     5521 ttatgccgga gtcgatgagt attgagttgc ataacgccgc taatgcaggc ggtgcagccg
     5581 gcaataatcc gtttttgcaa atggtggatt ggtgtgagaa gtctatcgcc cgcttgattt
     5641 tggggcaaac attaaccagc ggtgcagacg gcaaaagctc taccaatgca ctcggcaatg
     5701 tgcataacga agtgcggcgt gatttgttgg tgtcggacgt gaaacagctg gggcagacgt
     5761 ttacccaaca aattattctg ccgtttctgc aaattaactt cggcaatatc gacccgaccc
     5821 gcattccgag ttttgagttt gataccaaag agcctgccga cttggcgtta tttgccgaga
     5881 gtttgccaaa attggtggat attggcttac cgattccgac ccaatgggcg atggataaat
     5941 taggtattcc ggaggctcaa gagggcgaag cggtgctggg gcgtgtcgct cctctgccaa
     6001 catcggggca agcggtggga ttatcggcac attttgttaa atctccccct aaccccctct
     6061 ttgtcaaaga gggggaacag attactggct gttcttgtgg ttgtgggggt aaggttcagg
     6121 ccttgtcggc tcaaccccaa accggtatta aagagcaaga tgcgttagat agcttagcca
     6181 atgaagcctt tgccgtgccg gattttaaca agcagttcga ccccatcacg aaaaaggcgg
     6241 tggcggtggt aatggcgtgt agctcttatg atgaggcagc agagaaacta gcagcagcct
     6301 accccgactt agtgagtgaa gaacacgaac gctacttagc caatgcgtta tttttagcgg
     6361 atttattagg ggctgcgaat gcagaaagtt aattttgcca ttggactaga gcctaagcag
     6421 gcgattgagt ttttacggca gaagaagttg cttgcgaata aagtgtttaa gcaggaatta
     6481 tttgattctg cattggggcg agccaccacc attagcaagc tcactagcct tgaaatgacc
     6541 cgtgatattt atgagtcgat ggaaaaagca cggcgtgagg ggaaatcctt taatgaatgg
     6601 aagaaaacgc ttacggcaga atttgagcgg aaaggctggg tgtatggaca cgacaaggcg
     6661 attagtcgtg gtattgatgg caaattactt gccgacccga aaactggcga gcattttggc
     6721 acgcctcgcc gcttgaatac gatttatcgt accaatatgc agcaggctta ttctgcggct
     6781 cgttatcagc ggtatatgga taatgtggat aatcgccctt attggcaata ttcggcggta
     6841 ggcgaccaac gcacccgccc tgctcatcaa gcgttaaacg gcaaaattta tcgttatgac
     6901 gatccgtttt gggcgacctt ttacccacct aacggcttta attgccgttg cacggtgatt
     6961 gcactgggtg agcgtgattt aaaacgcaaa gggattgatg aggtcggtag tagtgagccg
     7021 ttcttagtta aggcaaaacg cccgaaagat aagctcggca accaagaaga aaccattggt
     7081 tttaaactgc ctgacggcac ggtgcgattg gctgataaag ggtttgatta taacgtgggg
     7141 cgtttaacct ataagccgaa tttggattta taccctgaaa agctggctca ccaatttgct
     7201 aaggcggaaa tgaatggggg tgagtttaag caggctttta agaagctaga agatgcggta
     7261 aatcaagcca aaggcagcca taaaaaactc tccgccgatg agatggttaa ggtgcgaaat
     7321 gccctcaatc agaactttaa atttgcggca ggtcggttaa gtgaggaaac tcaaaagcag
     7381 attgatagca aagtgggtac tgtatggctt tctgatgata cgctgattaa gcaattcaat
     7441 agccgtgagg ggcaaaattt tgatgtatcg gattatgcaa atttacccga tatttttaat
     7501 aacccattaa aagtagaatt agatgagcgt gatgggtggc gtttttatgc ggaattgaac
     7561 ggtaagcgtt attttgcagt gataaaagtg ttggcccaat ataatgagat atttgtgcag
     7621 tcgtttagat tagtaagcga taagcagtgg gcaaaggttt ttaattagcc gctaggtagg
     7681 gctcgaacca cctacacaca gtccagagtc tgttgcacct cgtcgcttgc gatcctcgag
     7741 attatcatcg cttttctagc ggctgtttaa aatatacccc tgtttatttt aaaaatcaac
     7801 tcagatggtt aaaaaatgat tgaaatccaa attaacggta tagatgagat tattgccact
     7861 ctcaaccgta ttgcgactaa aaccaaagat aaaactgatt taatgcggaa tatcgccggt
     7921 acgatggaat cggcagtgct gacgaatttt gatgagggcg gtcgcccgaa atggctgggt
     7981 ataaaacatc ggcaaggcac gccgttagtt gatacggaaa atttaatggg cagcattact
     8041 gctgattata ataatgattc ggcgattgtt ggcacaaatg agccttatgc tgctattcat
     8101 caattcggtg gtatggctgg gcgtgggcgt aaagtaaaaa ttgaagcccg acctttttta
     8161 caattaacct cgcaagacag gcaagatatt ttggacgatg tgcaagccta ctggcaaaaa
     8221 ctgctggatt aagcgataag ataatcgcca cagatagccc ctaaatcgct ctctgtggcg
     8281 tttttgtttt ttatggtacg atttatcatt ccaacttttt taaaattttt taaaacggat
     8341 ttaaagcgtt ttaaaatggg ttgcatttct tgcttaatat aagcggtcac ttttttctga
     8401 aaatttgcaa cttgtggaag ttgctccccg ttactctttt ttctcaatct tctattcttt
     8461 agcctcatta atttgttttg aggtgttttt gtgtttaagc agaaattcaa actaaacccc
     8521 attgcattga gttttaaact caaccaagag gcaaatggac gtattcaact ttgccctttt
     8581 ggttggtttg aggctcaaga cgggcgtgga ggacgttggt atgtaggtga cgagaatggc
     8641 tatgcgttag ccgatgatat taacaacact gcgattgatc tgatgattga ttatgagcat
     8701 cagaccctgt acatcgccga gaacggcaaa ggcaaccctg ctgcgggttg gattaccaag
     8761 gcggaatata tctcgggcga aggcttgttt gcggatgtta agtggacacc acaagcgacc
     8821 caagagatta aagacggcgt ttatcgctat ctctcgccac tgtttttgac agacggcagc
     8881 ggaatggtaa ttaaggtact taatgccgcc ttaactaacc gccctgcctt gcataatctg
     8941 caagaggtgg ttgcgatgtc tagccggttt gccccatttt taaccccaaa agaggaaaat
     9001 ccaaaaatga aagaactctt aattaaatta tttgcattgt cggcaaatgc gaccgatgag
     9061 cagattaccg aaaaactgac cgcacttgag aaagccaaag gcgacagccc ggtggcgttg
     9121 agcgatgtgt atgccgagct tgccaaagag aaaggcaatg ttgtggcgtt atcagccaaa
     9181 gtgaataacc ctgacccggc gaagtttgtg gcgttaagcg acttgcaagc agtgcaaacc
     9241 gagctgaacg gcttaaaaca gcaaatcaac gataaagagc gtgatgcgtt aattcaaact
     9301 gctctctctg atggtcgttt attaccagct caaaaagagt gggcggaaaa cttaggtaag
     9361 cagaatttag tggcgttatc cgactttttg aaaacggtaa cacctaaccc tgctttagca
     9421 ggtacgcagt cggggggtga agacccgaac aaaggtgcgg agaaagtggc gttatcggct
     9481 gcggaaattg caaccgctaa gacgttgggc ttaaccccag atgaatttgc tcaaaaatac
     9541 aaagaggaag cgaagtaatg tttaaaaaat cggaattatt aaaagcctta gatacggcgt
     9601 ttaaaaaaga atttggtgca ggtttagctt taattaaacc gcaatgggaa atggtggcga
     9661 tgaagattag ttcttcgacc aaaaccaaca cttacggctg gttgggtcaa ttcccgaaaa
     9721 tgcgtgagtg ggtgggcaaa cgccaaatca agaaaatgca agcggaagcg atgtcgattg
     9781 acaataaaac ctttgaatcg acagtcagcg tggctcgtac cgatattgaa gacgatcagg
     9841 tcgggttatt caccccgatt gttcaacaag ccggtcaaag tgcggcggaa ttgccggatg
     9901 acttggtatt tggcttgttg gcaaaaggta aagaaacgct ttgctatgac ggtcagaact
     9961 ttttcgacac tgatcaccct gtttatgaaa acgtggacgg cactggcacg agcaaaactc
    10021 aaagcaatat caccaccggt gcagcaagtg gcaagcctgc gttttatatt ttagacgata
    10081 ccaatgcgat taagccgtta atttggcagg aacgcactaa gcctgaaatt gaaaccaagt
    10141 ttgacccgtc aaaatccgat actgtcttta tggaagatga atatctgtgg ggggtgcgtg
    10201 ctcgtggtaa tgccggcttt ggtttctggc agttaatcca ccgcgtagaa aattcagagc
    10261 tgaatgcgga aaccgtaatg gctgttatcg ctaaaatgcg tatgctcaaa ggcgatggtg
    10321 gcaagttgct gaacatccga ccaagcacga ttttagtgcc gccaacattg gaatatgcag
    10381 ctcgccagtt agttgaggcg gatattatta acggcacaag caacccatta aaaggtgtgc
    10441 tgaaagtagc tgtttctgct cagattgcag aatagtaagt taatcgggcg tagcaatacg
    10501 ccccttttga gaggatagca attatgagtc gtaagaaaaa agacgatgaa accttaaacc
    10561 caaaggaaaa tacaccacct gaagataagg ttgaagagca accaaaaccg cctgaagagg
    10621 aaacaaaacc tgatgatggt gctgtgattg accctatcgc ctttgaaatc aagctgaaat
    10681 ctatccaccc acaggcaaca tatggtcgtt gtggctaccg ttttaataaa gaaacggcgg
    10741 tggaaattgc tcgtgctgat ttaactgatg agcagattat cacattagct aacgaccctt
    10801 atttggagtt tgtacctgtt gttgagggcg atgcgtaatg tatgcgttgg ttgatgattt
    10861 cgttttgcga attggcgaac aggaatccat tgagctaacc gaccgtgaaa tggtaggcgt
    10921 ggttgatgaa gcgactcttg aagtagcttt agcggactct tccagccaaa ttgatggcta
    10981 tttaagtggg cgttaccgtc tgccattaaa gactgtaccg caaaatttaa agcgtatttg
    11041 ctgtgatttg gctcgttatc atttaaccag caaatcatta gtaacgatga ccgaagaggt
    11101 ggaaaaccgc tacaaacttt gcttaaaaga gctggaaaac atctctaagg gcgtagtgtc
    11161 gttagcggtt gatgaaacca atgaggaaga atcggctact ggcgaaaata cagtgcagtt
    11221 ttttaacggg ggcaaccgta tttgggggcg tgataagcga tgattagcaa aattgagcgt
    11281 gctttgattg agcgtttaac gctgggctta ggcaaaatgg tgtatgccgt tgctggttat
    11341 gccggggaaa ttaacgatga gaagttagat gttctccgtt tgcctgcttg tcttgtctct
    11401 tatggtggct cggcgttcga ggcgaaatca atgggagtaa gaggtaaacg ctatcaagcc
    11461 actgatgtgt ttgtggtgtt ggttattact cgctcaatgc gaaatcagac tgctgggcgt
    11521 ttaggtgggg taacaagtcg tgaggtgggg gttaatcagt tgctgggagc ggtgaaaacc
    11581 ttattgatta accagacttt agacggttta gtccacccta tccagcctaa gcgaatccgc
    11641 acgatttgga ataatgcgga ggtgaagaaa gaaaaactct ctgcttatgc tattgagttt
    11701 gaaatcagct acaacgagtg caatgtgctt gatgacggta gattccctga aggggttgag
    11761 ccgaatgagc aagtctttaa gcagtaccaa ggcaagctag atgaaccgca aggcgatttg
    11821 tcgggcttta ataatcggat ttttgacccg aataacaatg ccgaaacggc atttagaaca
    11881 gaatttaagg atggtgatta gatgttaaaa gtgaaagccg ctaaaggggt gcgtgtgccg
    11941 gtagaaaacc gaccgcatca ctatattgaa caagaggcag tagaggttga aaacaccctt
    12001 tactatcaac gccgcattgc ggatggcgat ttgattgtcg tcaaagaaac caaatccgct
    12061 aaagaaacag ggggcaaata atgtcaaaaa ttgaatttga gaaaatcccg aacagtattc
    12121 gcaaaccaag tgtgctgacc gaatacaaca acaaagacgc agtaaccacc ttgccgacca
    12181 atgagcaaga ggtgctaatt gttgcaccaa tgctaaacgg tgaggctgct tttactgctc
    12241 cgcaaaagat ttttagcgat gtggaggcgg aaaatttatt tggtaaaggc tcggtagctc
    12301 atttaatggt tcgccaagca atccaaaata atccgctaat ccgtttaacg gtggtgggct
    12361 taaaagacca cgaggcaggt attgcagcaa cagggcaagt tagttttacc ggcacagtaa
    12421 cttatgccgg tgtggtgcgt attacgattg ccggcacagc ttacgaaatt gcagccgcaa
    12481 aaggcgaaga agcacaggcg attgtggctc gtttagttaa tgtgattaat gcggcgagtt
    12541 atagccctgt ggtggcaagt gtggaaagtg aaacgacact taaactgacc tcaaaagcaa
    12601 aaggcgaaat cggcaatgaa atcacgcttg caacacgcaa tacagcaaca ggtttaaccc
    12661 ttgaggctcg tgcgtttgat aacggtcagc gtaatgccct aattgctccg gcgttggcga
    12721 gtgttgccgg tacgcattat aacgtgatta tttcgccgtt ttcagatgat gaaaatgccc
    12781 ttgccttgcg tagccattta gaatcggttt ctgccccgat tgaagataaa ccggctattg
    12841 gtgtaatggg ctggcgtggc acttatgcca ccggcacaac cttaaccgca agccttaaca
    12901 gtgagcgaat tattgtaggc tggtataagg gagcaaccga atcaaatgca atgattgcgg
    12961 cagggcttgg tgcggtaatt gccggtgaag aagatccggc tcgcccgtta aatacccttg
    13021 aagttaaagg cttaacggtc gtagatgact cgcagaaacc gttatttagc gaagtaaacc
    13081 aagcattata tcacggttta agcccgattg aggtggtggc aagccgtgtg cagattaccc
    13141 gtgcgattac tacatacacc aaaaacgtga cgaatactga tgacccaagc tatttggatt
    13201 taaccaccat tcgtacgctt gactatgtgc gtaaggcaat ccaaacccgt cagcgtttgc
    13261 gtttccctcg tgcgaaaaac tcccaccgta ttgtggcaaa agtacgctcg gagattttag
    13321 atgtgcttta tcagcttgag agcgaagagg taatcgaaaa tgtggaagcg tggaaaaatc
    13381 gcttattagt ggtgcgtaat caagacccga cttacttgga tttagaaatc cctgcggatg
    13441 tggttaatgg cttgcacgtt attcgtaaca aaattacgtt aattttatag ggggtgctag
    13501 atgtcaattg tttatgaagg ctcttgcgtg cttgaggtag atggcgttga gattgaaatt
    13561 accaaacttg atgtaaaaac cgtaaccggt cgcaagctgg ttaaaacgat gaacagttcc
    13621 ggacgtgcaa gaggttattc gcaaggcatt gcggaatata ctctctcggt gactgcagtt
    13681 gagcctcaag atgggacagt gattgattgg gataatatca aaaatgctaa gctcactaaa
    13741 tatccactgg ataacagtga aaaacgtacc tcttatttag gctgttttac taccgatgtg
    13801 agcgagtctt acaccgttga tggtgagtcg gtgcgtgata ttcaactcaa cgcattgcgt
    13861 aaggtgaatg aataatgaaa atcactttaa attttggcat tgaatataac gggaaaattc
    13921 gccgtgattg tacggtgcga ttgctgacga tgggcggtca atgcacggct caagaaatga
    13981 ttgcggattt agggtttgag gaaaactcgg aagccctatc aaagcgtgaa caaaccttgg
    14041 tcgatatggc ttacctttcg cagcaagtta cctttgatgg tatttatcaa ggtaatgtga
    14101 cggctcaatt tttatttgac aatttagctc ccgaagacta ctggcagttg attgaggcaa
    14161 cgctcacact ccgaaaaaag cggttagaaa atggggtgag ccaaagcgag agcgaaagcc
    14221 cggcaaatcc cgatttggcg tagcagaagc ctttaagcag taccgacaag cggtgatttt
    14281 actctcaaaa tttgcaatta ccgccgagca ggtatggcaa atgccgttgc ttgaggtatt
    14341 tgcgtggatt gagagctact tggagagtga gggcgtaaaa acaccgcata gcccaatggg
    14401 tgcgaatagc gaagtgaaac gcgaaagcta tgtctttact cggtgtggca aaattgaata
    14461 ggggcgaaag cccctttttt gtactttaaa attagtttaa agagacttta aaaatggcaa
    14521 aaaatatgaa agtgcaactg gaattgacgg caaaagatac tgcctcccca gttttaaacc
    14581 aagccgctaa aaccaccgaa aaagccttta aaaatacaga gcgagcggca caacaaagtg
    14641 gcaatgctca aacgcaagca gcacagaaag cagcgaatgc tacagaaagc tcaaatcgga
    14701 aaatagaaca gagttaccgt aatgcccgcc gagtggctgc cgatgtgagc cgagcccgtg
    14761 aaacattagg tgttcgggcg gaaaatgcaa tccaacgtga aattgaacaa actcgtgcag
    14821 cctatgaccg cttaaaacgc tcaggtgttg cctcgcaaaa tgagctacgc cgtgcttcag
    14881 aggcaacaaa gaaacgtgtg caggaattga atgcggaact ggggaaaacg agttttgggg
    14941 ataaagctgg aagttttggg cgtgggttga tgggtgcagg ggttggaatt gctgcaggtg
    15001 cagcaatggc tcgccagcct gcaagaaatc aaatggaatt tgatagacag cttgcaatgg
    15061 tagcgaatac cgccttttca gatcgtgatg tgaaagggcg tattgatggg aaaagagagt
    15121 tacttgatgc cgtacagaaa gcagtaagtg taggcggtgg ctcaaaagaa gaagcgttga
    15181 gctcactaga cgctttactt gcctcaggtg ctgtttctac cgaaaccgct ctcaatttac
    15241 tcccaacgtt gcagaaaggt gcggtcgcaa caggggcaag tgcaaatgat atggctcaaa
    15301 ttgctatttc ctcaatgcaa caatttggga ttaaagaaga ggatattggt cgagtcttag
    15361 atatggcagt tgctgctggg caagccggta gctttgagct tgcaaatatg gcaagttggt
    15421 tgcctcaaca aatggccgct gcaaaacaag ctggcttaag cggcattgag ggatttgagc
    15481 gtcttttaat tgccaatcag caagctcgtg tcactgccgg tacaagtaac gaggctggta
    15541 ataatttagt gaatctgttg ggtaagatta ctgctaaaga aactaatgag cgttttaaga
    15601 atattgaata taaagatccg aaaactggca aaaccaaagc gattgatttt gcaaaagcta
    15661 tggagcatta caagggaaaa gggcaagatt cattgcaggc ttttatgtct attatggatg
    15721 atgttgtcgg gagtgataaa cgctatcaag aattacaagc caaactaaaa acagctaaag
    15781 gtgaagatca gaaacgctta ttcaatgaat taaccaactt ggttgaaggt actgcaatcg
    15841 gagaaattat ttctgatcgt caagcattaa tggctttgct ggggataaag aataatgttc
    15901 agttaggtga aaaggtacaa aaagatattc agaatagtga aggggctgtt gaaacctccc
    15961 acgctgttat ccgtgatact aattcgcaca aagtggaggc attaaagaat gcgaccgaat
    16021 ttgcccaaat ggagaacttt gagaaagtaa acggtgtgtt gggtacttta gcggaacatt
    16081 taacgagcta tgctaaccaa taccctaatt taactcagtt tgttagcgga gcgactgatg
    16141 ccgttaaaat ctttggggct gcattagcag cctctagtgt gctggattta ttgactggca
    16201 aaaagggaaa tgatggtgga atgggtgatt tatttgataa atcatcgaaa gctactggaa
    16261 gtaaaggaaa agttagtaaa tttctttcag ttggaggctc atttgctagt gttgcgggcg
    16321 ttgccacaat gctacacgga gaccaagctc cgatgagtga ggagcgaaaa gcacaattaa
    16381 acgaccctaa ttatcaagct cgtcaaatgt acgaatataa aaaagagatt ttaggtagcc
    16441 gtttccactc gttttttcgt agtaatgaaa cccttgagca atatcggaaa gatgtgagtg
    16501 cttatgaggc taagcaaaag aatggcaata ctatgggagc tgtacaaggg gttttaagta
    16561 ccattccgag cttacaagag ttacgcccta aagttgattc ggttactcaa accctatcca
    16621 cctaccaagc cgactttcag gcattcggag caactctttc tgccggtatt gaggcagggc
    16681 ttgcctcgca atctcatacg attgcaaatc aaatcaccgt ggagttggac ggttcggtgg
    16741 tggctgaaaa agtggctgaa tatcagttta attttaacaa gaggatggcg taatgagcgg
    16801 ttggacaatg cctatacagc aggcaagttt taaaggtgtg cgtttcgatg tgcttgcggt
    16861 agatgacagc tttgagcgag cggtgattga acacgcctac ccttttgtga atggggctga
    16921 cttagaggat atggggctaa acacccaaac tattcggctg caagcggtct ttttcggctc
    16981 aagttattac acggactata tccgcttact gtcggtattg cagcaaaaag gggctgatgt
    17041 attagtccat cctattcgtg ggcgtttacc gaatatgtta ctcgtttcgg cgaatctaca
    17101 taccgatgcc gaaaatatca attatgttgc cttagatttg acttttaaag aggcaaccga
    17161 aatgcagccg atttttgcaa tcgaagattc tctgattact aaaattgata ggttgttgct
    17221 tgatctcgaa aacctatttg atgatggatt gcgtttttgg gatagcgttg cggtgtttga
    17281 tcttaaatct cgcttgcttg ggctttgggg ggcattattt gcctcatttg aggcggtgcg
    17341 taacttgttt gatttagaca agaaaaaata cagcattgcc tcatcaacct cacaacgaac
    17401 ctatttgaaa gatggttcgg gggcattaca ccagttaaaa gaaatggtgg atagcggtat
    17461 tcaggggcgt gctgatttaa cgacactctc gtttaaatct cagttactca atattacgga
    17521 tgcggtagat aacattcagg cgattgtgag caaagtggct agagatgagg gctttaaccg
    17581 ctcaaaaacg gttaagttac ttggctctga tgtggttgag cttggtatta tgcttgacct
    17641 tattgccacg actaagctca ctaaagtttt aacagaactg attgaggatc gagaggaaga
    17701 gctgctaatc ggtgatttag agttaattaa ccaaattgtg cgtgaacatt ggttaaacat
    17761 tatcaataaa ctgcgtgagc aacaaaagca cgctcaaaaa ggcataatga gtgataagac
    17821 aaaatctatc tacgagaccg cagaaaagtt gattaatcgt atccgtaatg tagctcatca
    17881 atttactgta cttgtgcttg cggtaattaa taaaaaaccg cctttgaccg tgcgaatggt
    17941 aatggatagc ggcacaatcc ataaagtagc ccattatttt tatggggatt acgagcgggc
    18001 ggatgagctg ttacgcctta atccgcatat tcgccagccg aactttattg agcgaggcac
    18061 gctgttaaat tgttattggg agtaaaaatg gaaaatgaaa ttgtggtgga gattgacggc
    18121 tcgcagcata aaaactggaa aagttatgat attgacagcg attttttaat tcctgctgat
    18181 agttttaatt ttgagttggg taaatctagc aatatagagg ttttacctaa ttattcgggc
    18241 aaaacggcaa tagttaaaat caatggcaaa acggtgctca ctggcattgt ggataccaca
    18301 catcacacca ttagcaaaag cgggcgtggg tttagcctaa atggacgtga taaagccgct
    18361 attttggtgg attgctctgc cccgattacc aatgtgcaag ggctctcttt gcttgatgct
    18421 gttaaaaaaa ttgtaacccc tcttgggatt aaagaggtgc aactgaaagc cgagaaaaac
    18481 ccgaccttaa gcaaggtaga tattgatgtg ggcgagtcag cgtgggaagc gattatgcgg
    18541 tgtgccaact cggcaggttt gcattgttgg tttgacccca aaggcgtgtt aattgtcggc
    18601 ggtgcggatt acgctcaacc gcccgttgcc acgttatatt gcgtgaaaga gtcgggggat
    18661 agccgtaaaa ataactttgt tgatgcaaca ctttcttatg atgtgtcgca aagctattcg
    18721 gaggtcactt ttcttgctca aaaacacggc aaagattctg ataatgccaa gcacgatttt
    18781 aaatgggtgt ataaaaatga ggaaatggag ctttataaac cgaaaactat cgtgctgggc
    18841 gatgtggaga acctcgaagc cttgatgaaa caggcgaaaa aacaggtatc agattggcag
    18901 ttggagtcat ttaacctcac gattattgta cctgaccata aaaccaaaga cggcacgttg
    18961 tggcaagctg ggcaacgtgt gcacgtggta tgtgaggagt atgatttaga tggtattttc
    19021 tttttaatgg ggcgacgttt tcgactctct cgcacgggtg gcacaaccac cgaattgcgg
    19081 ttaaaactgg atggcgtgtg gacacctgat gcttatcaag ctaaagcaca agaggctcgc
    19141 aagcgtaaag gcaaaaaagg acgtaagaaa aaagagcctg tagaatatgt aggctcgtgg
    19201 gagttgggaa aataatatga tgagaaaatt agcaaaacag actaaagagg tggcaaaagg
    19261 tgtgcaagat agcgtgcgtg ctgcttttag aggggtatta aatttagtca agagtggcag
    19321 tgatattcag caggtacagg tgtccgcttt agcggacgaa actatccaag atttagagct
    19381 aatgcagcat tttggtttca cttccgtgcc acctgccggc acgcaagcgg ttgttatccc
    19441 cttaggtggt aaaaccacgc acggtattat tgtggcgact gaaaacggat cgttccgagt
    19501 caaaaatctc aacgatggag aggtggcaat ttacgattcg agtggctcaa ccatcatatt
    19561 aaaaaacggg cgagtgattg atattgagtg cgatagcttt aacattaaat gcaagcaata
    19621 ttccgttacc gcaagcggtg gagcaaattt taacaccccg aaactagaaa ccgaccagca
    19681 gtttgtttca caagggcaaa tcagcggcaa tggcggaatg gcggtgcaag gtggagaagg
    19741 ggcaagtttt agcggcaatg taaaccaaac cagtggtagc tttaaaacaa gtggggatgt
    19801 gactgcaggt acggtatccc ttaaaaacca tactcatcaa agtgatgggc gaggtaaacc
    19861 aaactgatga tttcaagcgg ttattttttg caaaattttt gcagaatcta accgcttgtt
    19921 gtttgtggaa gtctctcccc gttactcctg tctttaatgt ctctaccata gcaatatgga
    19981 cagagaaatc agcccgctca ctcgggacta tacaagtgac aacatagcta cactgcaaaa
    20041 tgccgtgtat atcagactaa caacgccaaa aggctcatgg tgggcagatg ggcgtgtagg
    20101 ttctttgctc catcttattc agcgagaaaa agatttaagc cgcgtagggc ttttagccca
    20161 acagtacgcc gaagaggctt tgcagccgat tattgatgac ggacgagcca aaagcattac
    20221 ggtgacacac gagcagccaa aagacggctc gttaaatctt ttaatctccg ttattgataa
    20281 tcgtggggtt aaatttgagt ttaaacaccc tgtaaaactg gtttaagtgg tttttaaaat
    20341 gtatcaaatc ccaacgcttg aagatgttag aagagaaatt ctacgagata ttcaatcttt
    20401 agagccaact gctgatattg aggtggattc ggattatttt gttcgtgcct ccgctttggc
    20461 aagctgtgtg gtggggctgt atgctcacca aaactggatt gttcgtcagt atttcccaga
    20521 tacggcagac tccgaatacc tcgaaatgca cgctaaattg cgaaatcttt accgtaaaaa
    20581 tgcgacctat gcgagtggtt cgttgaaagt ttttggtact gctggctcag taatcaatga
    20641 gggcttgcaa gttaaatttg gcgagcgttt ttatgtaacc aaaagctcgg acgttattgg
    20701 tgatgatggc tctgcaacgg tgcgagtgat ttcaatggca acaggggcat caagcaatgt
    20761 taaatctgaa agtaaagcac aactgactgc tgctcctgct ggcgtatcaa gcgattgctt
    20821 gttattgcct gatgtaacag gcggaacaga agtggaaagt gatgcgacac tgcttgctcg
    20881 gttattagag cagattcgcc gaccaccgtc aggcgggaat aaaaatgact tccgccaatg
    20941 ggcagaaagc gttgatggcg taacctctgc gtttgtttat ccattacggc gtggcgaggg
    21001 tacggtagat attgcaatca cctcaggtga taccgtgcca agtgatgaaa tcgtgcgagc
    21061 aactcaagct tatattgatg aagtccgccc tgttacggct aaatcggttt atgtacttaa
    21121 gccagttgaa aaacgggtca attttaacat caaagtgcaa cttgatacgg atacgacgct
    21181 tgatggtgta aaagcggaaa tcgaaaacgc tttagagaat tattttttat cactcaaacc
    21241 tgctgacacc ttaattattt cgcaaattga ggcagtaatt agtgatttag tgggcgtagt
    21301 agatcgtgag attgtacagc caaccagaaa ccaaacgatt gatgcctacc gtgaaatggg
    21361 ctggttcaga ttgggtgatg taactgtgga gttgatgtga tggtaacgat taactctaaa
    21421 cacggcaagg cattgggcgg tttattaccg cctgtatcgt atgacccaaa cggcagatgg
    21481 ctagcgttat cccttgaagt tgaggggaga gagctagacc gcattgatgc gagagccaag
    21541 actttaatcg atgccgttga tgtatcaaca ggcattttta ttgatgattg ggagcgggtt
    21601 tgtggcttaa cggcgaatag ctcactactg cttgaaaccc gaattgagcg tgtgattgcg
    21661 aagttgaatc agcttggtgg gttgtcgatt tcgtacttaa tggagcaagc gaaagcacta
    21721 ggctacgaat ttaaaatcca cgagcctgaa ccctttagat gcggtattaa ccgttgtggc
    21781 gatagacttt gggataaaga tgtgatttgg atgttttttg tcgattttaa ccgagccgaa
    21841 aacaccgacc cttatttgcc tgcacctgtg attaaaacgc cacaagcatt aaaactatta
    21901 ttggacgaaa ttaaacctgc atttacccgt tattgggtaa gagattttac agcgtggaat
    21961 aactaaatga gacaaacgat gaaccctatt acgactgata acggtcgatt taaagacggt
    22021 aatcccgcaa cgggagagta cggcacagtt gtaacagccg aacatatgaa caatgtgcaa
    22081 gactccgtta tctcaatgca gaatgagatt ataactgtat tgaatgaggc tgggattgca
    22141 gttaatccta atgataatac tcaactttgg caggcattgc agatgattgc tgggcaagtt
    22201 gagagtattg ctgatttacg ccaatttgag ccagtaaaag accgccaggt tgtatttgtt
    22261 aaagcgtatc atactggcag cgataaaggt ggtgggtatt tcgtttcgga ttttgcagat
    22321 acagtttctg cagataatag cgtaacccta tttgtgacag caaatggaaa acgctggaaa
    22381 cgactttatt caacactcaa tatctttgac tttggagtca gcttagacag cgtgaataac
    22441 gatgccatca a
//
LOCUS       DANLUT010000017        22357 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLUT010000017 DANLUT010000000
VERSION     DANLUT010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22357
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            139..387
                     /gene="rpsP"
                     /locus_tag="PXB38_000604"
     CDS             139..387
                     /gene="rpsP"
                     /locus_tag="PXB38_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL5352959.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVADSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            423..950
                     /gene="rimM"
                     /locus_tag="PXB38_000605"
     CDS             423..950
                     /gene="rimM"
                     /locus_tag="PXB38_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL5352960.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQSESIFDYQPWFLKI
                     KGNWQPVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVRANSKDAFGKQERLIPFLYEQVVKRV
                     DLATKAITVEWDAGF"
     gene            995..1750
                     /gene="trmD"
                     /locus_tag="PXB38_000606"
     CDS             995..1750
                     /gene="trmD"
                     /locus_tag="PXB38_000606"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL5352961.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQIECWNPRDFTLD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAASAVDGGEAKVIYLSPQGRKLDQTG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            1776..2126
                     /gene="rplS"
                     /locus_tag="PXB38_000607"
     CDS             1776..2126
                     /gene="rplS"
                     /locus_tag="PXB38_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL5352962.1"
                     /translation="MSNIIKQLEQEQLKQNLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            2282..2638
                     /locus_tag="PXB38_000608"
     CDS             2282..2638
                     /locus_tag="PXB38_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352963.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            2640..2963
                     /locus_tag="PXB38_000609"
     CDS             2640..2963
                     /locus_tag="PXB38_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352964.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(2973..3305)
                     /locus_tag="PXB38_000610"
     CDS             complement(2973..3305)
                     /locus_tag="PXB38_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5352965.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(3398..4594)
                     /locus_tag="PXB38_000611"
     CDS             complement(3398..4594)
                     /locus_tag="PXB38_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL5352966.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(4743..6086)
                     /gene="accC"
                     /locus_tag="PXB38_000612"
     CDS             complement(4743..6086)
                     /gene="accC"
                     /locus_tag="PXB38_000612"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL5352967.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(6158..6625)
                     /locus_tag="PXB38_000613"
     CDS             complement(6158..6625)
                     /locus_tag="PXB38_000613"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL5352968.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTAPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDALCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(6878..7660)
                     /locus_tag="PXB38_000614"
     CDS             complement(6878..7660)
                     /locus_tag="PXB38_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5352969.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFTRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(7670..8107)
                     /gene="aroQ"
                     /locus_tag="PXB38_000615"
     CDS             complement(7670..8107)
                     /gene="aroQ"
                     /locus_tag="PXB38_000615"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL5352970.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(8114..8572)
                     /locus_tag="PXB38_000616"
     CDS             complement(8114..8572)
                     /locus_tag="PXB38_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5352971.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKWTVAPWNDGGIRFYQRLGAKENRKWLNYELQVE"
     gene            complement(8632..9456)
                     /gene="dapD"
                     /locus_tag="PXB38_000617"
     CDS             complement(8632..9456)
                     /gene="dapD"
                     /locus_tag="PXB38_000617"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL5352972.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            9604..10266
                     /locus_tag="PXB38_000618"
     CDS             9604..10266
                     /locus_tag="PXB38_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL5352973.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            10263..11015
                     /locus_tag="PXB38_000619"
     CDS             10263..11015
                     /locus_tag="PXB38_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5352974.1"
                     /translation="MIQLINETQQHDKFRQICEKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            11146..11982
                     /gene="ftsN"
                     /locus_tag="PXB38_000620"
     CDS             11146..11982
                     /gene="ftsN"
                     /locus_tag="PXB38_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL5352975.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(12024..13205)
                     /locus_tag="PXB38_000621"
     CDS             complement(12024..13205)
                     /locus_tag="PXB38_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5352976.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            13312..13647
                     /locus_tag="PXB38_000622"
     CDS             13312..13647
                     /locus_tag="PXB38_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352977.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHKHGDHY
                     DEHVLEVNETNPADCNAAHCCGDHVHGEGCGHEAVPHGDHIDYIVNGRLHHQHGDHCD
                     DHGPVEIVK"
     gene            13779..15311
                     /locus_tag="PXB38_000623"
     CDS             13779..15311
                     /locus_tag="PXB38_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL5352978.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGSIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLEAGEIVISRANA
                     KVQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLL
                     PQGALQSGTENRGETTEQVRKRVFLARKMQFERAGKINSQLTTREIERDCQLSAQDAL
                     FLETALTKLGLSVRAYHRILKVSRTIADLAGEANIQQLHLAEALGYRAMDRLLQRLQG
                     EP"
     gene            complement(15360..16199)
                     /gene="menH"
                     /locus_tag="PXB38_000624"
     CDS             complement(15360..16199)
                     /gene="menH"
                     /locus_tag="PXB38_000624"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL5352979.1"
                     /translation="MLSYQWHAQQGTPVIFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFADLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMDN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(16248..17954)
                     /locus_tag="PXB38_000625"
     CDS             complement(16248..17954)
                     /locus_tag="PXB38_000625"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL5352980.1"
                     /translation="MSVSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLEAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATNSPVAVIVTSGTAVANLYPAVIEASLSHQN
                     LIILSADRPTELIGCGANQAITQQGIFANYPAASINLPKANEAYNASWLVSTIEQACT
                     TQAQQGGVLHINAPFEEPLYEADINEILNTPWLRPIQGWLNNSQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKNWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIIIQFGTQIVSKRVNEFLKAYQGEFWLVDESQDYINPNAHHQTRF
                     VAKAHHFLRVHPPLRQKPWLLEPLALSQFCATFIEQQVGGSLSEASLAHNIQDILAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGAIFDMLPVESKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            complement(18135..19418)
                     /gene="dctM"
                     /locus_tag="PXB38_000626"
     CDS             complement(18135..19418)
                     /gene="dctM"
                     /locus_tag="PXB38_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003105529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate TRAP transporter large permease
                     protein DctM"
                     /protein_id="HDL5352981.1"
                     /translation="MIILVLFSLLFILMFLGVPIAISLGLAGAVTIMFFSQDSVSSLA
                     IKLFETSEHYTLLAIPFFLLAGAFMTTGGVAKRLIDFANATVGHIRGGLAIAAVMSCM
                     LFAALSGSSPATVAAVGSIAIAGMVRSGYPVGFGTGIICNAGTLGILIPPSVVMVVYA
                     ASTETSVGKLFMAGVVPGLMLGLVLMIAIYVVARIKNLPAQPRATVKEWFTAARKAIW
                     GLLLMVIILGGIYSGIFTPTEAAAVAAVYSWFVAVFIYKDVKLRDCPKVLLESAKLSV
                     MLMFIIANAMLFAHVLTTEQIPQLITNTVVEWNLQPWTFLLVVNIVLLIAGAFMEPSA
                     IILILAPILFPIAVQLGIDPIHLGIIMVVNMEIGLITPPIGLNLFVASAVSKMPLSDV
                     IKAAMPWLLLLLGFLVLITYIPAISMALPNWIGIN"
     gene            complement(19418..20041)
                     /locus_tag="PXB38_000627"
     CDS             complement(19418..20041)
                     /locus_tag="PXB38_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003105527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5352982.1"
                     /translation="MSSLKWFWERFEECFIAILLMVMTLVTFTYVMFNNLYNVFFDLA
                     EAVPFTASFAEPLGEWIMEMAQEMTWSVALTKVCFGWLIFFGASYGVRTAGHIGVDVL
                     VKKLSRNAQKVVGLIAIAACLAYAFLIASASYEWISAMYVADIGAEDLHQFHLKQWHV
                     GLIMPVGFALIGIRFIEILVRILQGKQVGLGLADESEDAMKLAQGEE"
     gene            20265..21212
                     /locus_tag="PXB38_000628"
                     /pseudo
     CDS             20265..21212
                     /locus_tag="PXB38_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621529.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(21349..22344)
                     /locus_tag="PXB38_000629"
     CDS             complement(21349..22344)
                     /locus_tag="PXB38_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5352983.1"
                     /translation="MLKPFKKLAAALAVTAAFSVSAFANDPIVIKFSHVVANETPKGQ
                     GALMFQKLVDERLNGKVKVEVYPNSSLYADGKEMEALLLNNVQMLAPSLAKFDKYTPK
                     IQIFDLPFLFDDIKAVERFEQSEAGQSLLKSMEDKGITGLSYWNNDLKQLSANKELRE
                     PKDARGLKFRVQASEVLDAQFKALKAVPRKMAFGEMYQGLQTGVVNGAENPYSNIYSQ
                     KIHEVQKFITASNHGLLSYMVIVNTDFWNKIPEDVRTELTKILDEVSVEVNKQSHDLN
                     QSDKQKIVDSGASQIITLTDEQREKWREAMRPVWKQFEDAIGADLIKAAEAANKQ"
BASE COUNT         6405 a         4763 c         4899 g         6290 t
ORIGIN      
        1 tcatatcaat gaatctccct tgtctttccg caaaaaatct gtataatatg accgcttgtt
       61 ttctcttttg aaacaagttc gtcaccctca cctcgaacga gggtttattt tttactatca
      121 acatttagag gaaaggttat ggtaaccatt cgtttaactc gtggcggagc taaaaaacgc
      181 ccattttacc aaatcgtggt agcggatagt cgttcacctc gtgatggtcg ctttatcgag
      241 cgtatcggtt tcttcaatcc attagcagct ggtcaagctg agcgtttacg tttagatgtg
      301 gctaaagtgg atgcgtgggt tgctaaaggt gctgacttat cagatcgtgt tgcttcttta
      361 gtaaaagaag ctcgcaaagc agcttaatat taaataagcc aaaattaaat aagtaggtga
      421 gtatgagcga acaaaaaatt gaagttgtcg gtaaattagg ttcaacctat gggatccgtg
      481 gctggttacg cctctattca tcaacagaac aatctgaaag cattttcgac tatcagccgt
      541 ggtttttaaa aattaaaggc aactggcagc cagtcgaatt agaaagttgg cgttatcaca
      601 gcaacgattt gattgtgaag ttaaaaggta cggaagatcg tgaagccgca cagttattaa
      661 cgaatgccga aatcggtgta gatttatctg tatttcctga attggaagaa ggggattact
      721 attggcacga tttaatcggc tgtacagtag taaacttgga aggctacaca atgggaactg
      781 taaccgaaat gatggaaaca ggttcaaacg atgtattagt ggtgcgtgca aacagcaaag
      841 atgcttttgg taaacaagaa cgattaattc cgtttttgta cgaacaagta gttaaaagag
      901 tagatctcgc caccaaagcc ataacggtgg agtgggacgc tggtttctaa cctcaggtat
      961 gcggtgagct ttggaaaaca tttgaggcgt taagatgtgg attggtatta tttcactgtt
     1021 tcctgaaatg tttaaagcaa ttaccgattt cggggtgaca ggacgtgcag ttaagcaaaa
     1081 tctattgcaa atcgaatgtt ggaatccacg tgatttcaca ttagataaac ataaaacggt
     1141 tgatgatcgt ccttatggcg gtgggccggg aatgttaatg atggtgcagc cgttgcgtga
     1201 tgcgattcac gcagcaaaaa aggcagcatc agcagtagat ggtggtgaag ctaaagtgat
     1261 ttatctttca ccgcaaggac gtaaactcga tcaaacaggc gtgcaaacgc tggcttcaaa
     1321 tcagaaactg attttaattt gtggacgata tgaaggcgtg gacgagcgat tgattcaaac
     1381 agaagttgat gaagaatggt caatcggtga ttacgttctc acaggggggg aattacctgc
     1441 aatgacatta attgatgctg ttgcaagatt tgttccgggc gtattgggta agcaggcttc
     1501 agcgttagaa gattctttcg cagaaggatt actagattgc ccacactata cccgccctga
     1561 agtattagac ggtatgcctg ttccggaggt gctgatgtct ggacatcacg aacaaattcg
     1621 taaatggcga ttggaacaat cgcttgagcg aacgtggtta agacgccctg agctattgga
     1681 tagcctagct ctgactgacg aacaaagagt gttgttagct aaaattaaaa agcaacataa
     1741 aatcagttaa ttctaggatt tagaaggttt tcaaaatgag taacatcatc aaacaacttg
     1801 aacaagaaca gttaaaacaa aacttaccta gcttccgtcc aggtgacaca ttagaagtta
     1861 aggtatgggt agtagaaggt agtaaaaaac gtttgcaagc gttcgaaggc gtggttattg
     1921 caattcgtaa ccgtggcttg cactctgcat tcactctacg taaagtttca aatggcgtag
     1981 gcgttgagcg tgtattccaa actcactcac ctgtaattga cagcatttct gttaaacgta
     2041 aaggtgcggt acgtaaagct aaactttact acttacgtga gcgttctggt aaatctgcac
     2101 gtatcaaaga gcgtcttggc gactaattgc tacaaaacag tgaaatgcac aaaagccttg
     2161 aggaaactca aggcttttgc tttttgtatt tacaagcagt tatttttcct caatgattta
     2221 caaatcttgc tttctttttt gttataatgt taacaagata acattaatga taggtgtcga
     2281 tatgaaacaa ttaagtatta gattgccaga cgatgaattt acttttatta aaacatttgc
     2341 ttctgctcat aaactgactt tacaaaattt tgtgatgtcc gcaatccaag ctaaagttgc
     2401 agaaatgtct gctaaaaata aaatatctga agaaagtaac attcatcaac ctctttctaa
     2461 agatgaaaaa ataatgctaa atgaggcaaa agtattttat tctgctcgtt cgcatttaaa
     2521 ggcagaaaat gtgattcttc cgagtgattt tatggagcaa attaaatcag gctgtggagc
     2581 agaaaaaatg gcagaaatga tgggatatac caaagaagat tgggagtcaa tgaagtaata
     2641 tggggcagat tacatttagt aatattttca caaaagtgat ttttgagaat gtgctttctg
     2701 cttcaactaa agagaaaata aaacaaatgc tttttcagtc tgtggttgca ttacctcctc
     2761 tccattcaga aagaaaaatg attttacagt tgaaaaagca aaaaattacc attttttatc
     2821 aagttattga ggaacaatct gtgcaaatcc tcgcttatca atttggtgga actgataaat
     2881 tgacaggtgt gtctaaagct cactttaaaa cactagatgc catttttcaa atgacggatg
     2941 aagagaaaga aggaaaattc taatgtaagc ggttattttt ccatattttt ttgcaaataa
     3001 cgtttctcaa attttgcttg atggcgttca agcacttccg tcatcgaaat gccatattta
     3061 tcggctaata caaaaagatt atccatcaca tcgcctaact cttcgattaa gttatctcgt
     3121 ttttgctgtt gtgaagcttc ggtttcgtcc ggtcgttcac gcccgatttc aatcgctctt
     3181 actgcacaag ccacttcgcc gatttcttct gctagataag tcacccgcat aaaagggctt
     3241 cgttcatacc aaccttgttg ttggtaaaac tggcgaaccc attgttgata ttgttcaatt
     3301 tgcattttat ttctgattca aaaagtaggg acgaaaaatt tttcgccctt ttataagaaa
     3361 atgtatcagg gcaaatgatg atttgcccct aggagtgtta ctctgcctca gagagaataa
     3421 tccagccact atccagccag tcgcaaatgg tgtctagcat tagctccagc tccgcttggt
     3481 cttgcacttt ggaggcaagt ttgttccacg aaatcgaatc tccattggcg atacgaatca
     3541 gtaatgccat ttctgcttcg tttaactcat caatccactc gccatttaca taaacccgtt
     3601 gagggttctc ggtgtagagg atttttacat ttgcatcttg ctgtaaccag ccgccggctt
     3661 cgagaatttc ttgcacttcg tcagggtaat attcattgtc agtttgcaat aattcataac
     3721 ggcgggagct tgccgcagtg gcaacactgt gagtgagtaa ctcatcgaac tgttcggaat
     3781 tttggagcaa gtcgattaac tgatgtttaa acattttcac cattttcgga tcaagcaacg
     3841 cattcggctg ttcattcggc gttaagcgga acggaagatg aaattccgat gaattaatgt
     3901 tgtcggcttg ttgttcgatg gttttgcaga gattttccag taaatcggtc gcatttggat
     3961 aacgtaaacc aaaagagaaa gttaaacctt gctcgctttc ggaaacacca tagtgagcca
     4021 ttcgagacgg aacataaagc acatcacccg ggttcattac ctcgtccatt accagttcgc
     4081 ccatatcatc aaaaatgcgg atcggttggt ttggtttgaa ttcggtgctt ggatcgcacc
     4141 atttgcctaa ttgccaacga cgttgcccat agccttgcac caagaacaca tcgtactcat
     4201 cataatgttt gccgacagtg ccgttgagcg gtgagcaaga aaccataatg tcatcacgtt
     4261 gccattgcgg gataaaacca aaagcctgcc aaagctcgcc tagctcagga gaccattgct
     4321 cgaggttttg caccattaca gaccattgta caggtaactc ttccaaatct tcctcaacaa
     4381 gcgggctgga tttaacagac catttctcgt tttcgcattg aatcaggcgt gcagtgactt
     4441 cttcctctaa tgccagttct aaaatatctt ccggctcaaa caatccgaca atttggggta
     4501 agccgttacg aattaatagc ggtcgttttt gccaatattc tcgcaaaaag gtttcagggc
     4561 tgatattttc aggtaagcag aatggaatgt tcataatggc tccttgctac gtgcttcttt
     4621 gagattactg atattctacc cgagaaatca ggaaaaacgg gaaatttttt atgatttagc
     4681 gacatcattc acattttgaa gaggaaataa tgaaaaaggc gaacattgtt cgcctttgaa
     4741 atttatttta aaccgagttt tttctcgaga tagtggatat tggtgccacc tttgcggaat
     4801 tctttatccg caagaatttg agtatgtaaa ggaatattgg ttttaatgcc ttccacaatg
     4861 gtttcggaaa gggcattttc catccggcga atcgcaatat cacgattttc agcaaaggta
     4921 atcaatttac caatcattga atcgtaatgt ggcggcacgc tatagcctga gtaaatatgt
     4981 gaatcccaac gcacacctaa accacccgga acgtgtaaac gggtaatttt acccggcgat
     5041 ggcaagaagg tgtttggatc ttctgcgttg atacggcact caatggcgtg acctttcact
     5101 ttaatatcat cttgtgtgat cgaaagtggt aagccggctg ccacacgcag ttgctctttt
     5161 accaagtcca caccggtaat catttcggtt acagggtgtt ctacctgtaa gcgggtgttc
     5221 atttcaatga agtaaaactc gccgttttca tataagaact caaaagtacc tgcaccacgg
     5281 tagccaattt cacggcaggc attggcacaa cgctccccaa taaattgacg caattcaggt
     5341 gtaatacccg gagcaggtgc ttcttccacc actttttggt ggcgacgttg cattgaacag
     5401 tcacgctctg ctaaataaac cgcattaccg tgagtatcgg caagtacttg gatttcaata
     5461 tggcgtggat tttctaaata tttctccata tacaccatat cgttattaaa tgccgctttc
     5521 gcttcggctt tcgtcattgc gatagattct tccaaatctt tctcgtgatg aaccacacgc
     5581 ataccacgac cgccaccacc acctgatgct ttgatgatca ccgggtagcc gatacgttta
     5641 gcgatttctt tatttttctt cggatcgtta ccaaccggac cgtcagaacc cggtacgcaa
     5701 ggcacgccgg cttttttcat tgcattgata gcagagactt tatcgcccat taagcgaatc
     5761 acatcagccg ttggaccaat aaagataaag cctgatttct caacttgttc ggcaaagttt
     5821 gcgttttcag ataagaaacc gtagcccgga tgaatagcat cggcattcgt tacttcggca
     5881 gcggcaataa tcatcgggat atttaaatag ctttttaccg atggagcagg accgatacaa
     5941 atggtttcat cggctaattt aacgtgtttt aattcacggt cggcagttga atgcactgca
     6001 accgttttaa tgcccaattc tttacaagca cgcaaaatac gcagggcaat ttcaccacgg
     6061 tttgcgataa caactttttc taacataggg aaattccttg tgttctagaa aatgtagggc
     6121 gtgttgcaca cgcccgttgg ataatttaag gaagagctta ttcaatgatg aataattttt
     6181 ggtcgaattc taccggttcg ccatcattaa ctaagatttc ttttaccaca ccggctttgt
     6241 ctgactcgat acggttcatc attttcattg cttctacaat acataacgca tcaccgattt
     6301 tcacggtttg acccacttca acgaacggtt ttgcatctgg gcttgggcta cggtagaaag
     6361 tccccaccat tggtgaaagc actgcgtggc cactcgtttc tgcggctttt ggtgcttcag
     6421 ccggagctgc aacaggtgct gtcgaagcta cttgaggtgc cgctggtgca acaacaggag
     6481 ctgctgcata ttgaactgca gctggtgcaa cagctggagc agcacggcta atacgcaccg
     6541 taccttcttc ttcagacact tctaactcgg taatgccaga ttcttcaact aattcaataa
     6601 gttttttgat tttgcgaata tccataataa gattccgtat gtgattaaat aaaataaaaa
     6661 agagaactcc acatttgggg tataaattca aatgtagagt taaaaaatgc tgggcgtaga
     6721 atacctgaat ttcgctaatt ttgcgaataa aatctgataa ttttggcgaa aatggacgat
     6781 tttagcattc atcgtaccag ttaggatttt tggaaaatgg tgactcacaa gcgattgaaa
     6841 attgccaatt ttttgtaaaa aacaaccgct tgtcagatta tttcaataaa tcttcatttt
     6901 tcttgtaatt ccacttgcta ccgggcttgt cgatatactg aaaatattcg ttggtaaacg
     6961 taccttgagc acaagttact ttgtctcggc ggaaatttac ttctttatca ccaatggcat
     7021 tatttagggt gtcaggaccg gtcataacaa acacgccacc ttcaatccga cgattctcaa
     7081 tattgctgat aatcagctca agggtgtctt ttagaatcca atttccagct tccgaagcca
     7141 agaaaaagtt ggtgtattta tcacggcgtt taattaacac ttcgctatca ttttcgccaa
     7201 taattttaga gagtgggtaa accaaatgcc cgtcaatatc aatataaatg ccaccttctc
     7261 ggagcaaagt aaaaattcgc caaaaatcag cttgtgccgc accatcggtt aatttgctat
     7321 aggcgttaaa ggtgcgttca tcggcgttgg ccttgatgta tgcctctcgt tcttctgtgc
     7381 taacgtagcg ataatcgtag ctcaatgaca ttaggcgggt aaacagataa ttcgcataca
     7441 ttggcaaggt gactttgtta gaataattcg tttgccaaat ggttttggta attttgctcg
     7501 gaatgcttga ttggattttt gccgggctat attccggaat ggtgaaacgt tttttcggaa
     7561 aaagtgcatg gaacggataa ctcaatattt tgacgatatt accgaataaa cggaagactc
     7621 cgttacagat cacaataaat tgttcatttt taacagccat tttattacct tatgctttta
     7681 agtgtgaaat tgcaaaatcc aacgcatatt catagccttt tgcccctaaa ccgcaaataa
     7741 cgccttttgc aatatcactt agataggagt gatggcgaaa aggttcacgg ctatgaacgt
     7801 tagacaaatg cacctcaaca aacggaatcg acacactcaa taacgcatca cgaattgcca
     7861 cgctggtgtg agtaaatgcc ccggggttaa taataataaa atcggtatgc tgaaaggctt
     7921 ggtgaatacg gttgataatc ggctcttcac cgttggcttg aaagctctcc agctcaacat
     7981 cttgggccgc agccaatttt tttaagtggt tttcaatatc cgccaaagtt tgcgaaccgt
     8041 aaatttgtgg ctcacgtttg cccaacatat ttaaattcgg gccgttaagg agaaggattt
     8101 ttttcatatt tacttattca acttgtaatt cataattaag ccatttacgg ttttctttcg
     8161 cccccaagcg ttgataaaaa cgaataccac cgtcattcca aggagcaact gtccatttta
     8221 ttgtcttaca atgatgtgcc ttcgcctcat ttttcaaggc ttgcattaac gcctctccca
     8281 ctttctgatt ccgagcagtt tcatcaacat aaagctcttt catataaata gcggggcggt
     8341 tttgggcagt gtaaggaaga aaataataaa ccaatatgcc gataatgtta gacgcatttt
     8401 cagccactaa acagtaaaaa tcgggtgggc ttttgcgaaa gccggattcc attacaactt
     8461 caggagtaat cgcaaaagaa tcgatatagt gctcaaacac agccagtttt tgcatcagag
     8521 ggaacacttg gtgggtatct tgttcgacca ttttgcggat tgtaaatgcc ataaaattcc
     8581 ttacaagcgg taaaaaaatc cctcactttt gcaaagcgag ggaggtttta attattcgtc
     8641 aatagaacgt aataagtcgt ttaagcccac tttgcttaag gttttctcat ccactttttt
     8701 cacaatcacc gcacagtaga ggttgtgtga accatctttt gatggaagcg agcctgaaac
     8761 cacaacagag cctgccggca cacggccgta atgtacttcg ccggtttcac ggtcgtaaat
     8821 tttggtagat tgaccgataa acacgcccat tgagatcacg cagttatctt caacaatcac
     8881 gccttctacg atttcagaac gtgcaccgat aaagcagttg tcgccgatga tggttgggtt
     8941 cgcttgtaat ggctctaaca caccaccgat gcccacgcca ccagaaaggt gaacattttt
     9001 accgatttgc gcacaagaac ccactgttac ccaagtgtcc accattgtgc cttcgccaac
     9061 gtatgcaccg atgttcacga aagatggcat taacaccacg tttttctcga tatgtgaacc
     9121 tttacgcacc accgcacccg gcacggcacg aatgccatct gctttgaatt gctcttcggt
     9181 gtagttgccg tatttggttg gcactttgtc gtagaatttg gtttctgcac cgtcgatgat
     9241 ttcattgtcg gcaatacgga atgaaagtaa taccgctttt ttcacccatt ggtttactac
     9301 ccactcgcca tcttttttct cggcaacacg cagtgaaccg ttgtctaatc ctgcgatcac
     9361 ctcttctact gctgctttgg tttcagcatc aacggttttc ggagtaattt ccgcacggcg
     9421 ttcaaatgcc gcttcaataa tagcttgtaa agacattgtt gtgttccttc aatatataaa
     9481 ttaaaacaga aaattcggct cactttttaa catagaaagg cgtttatttc cacaagaaaa
     9541 aacatatcgc agaaatttag tttataattc caagccactt atttgataca agcggtgatt
     9601 tttgtggaaa attttgcaaa tctgcttacc ggtaaaacgc gtgagcattt agtgccgttg
     9661 ccgaacgctc tttcggataa acattacctt cagcctcagg tggttgaggc ttttttgacg
     9721 ttgcagcatg ctgcaaaaca agccggcttt aatttacagc ctgccagtac ttttcgtgat
     9781 tttgaacgcc aaaaagggat ttggaatgcg aagtttaggg gtgagcgtaa ggttcacgat
     9841 gataacgggg ttgcgattga tatggcggcg ttatcggatc ttgaaaagtg caaagcaatg
     9901 ttgagatggt ctgcggtgcc gggggcaagt cggcatcatt ggggaacgga aattgatatt
     9961 tttgaccctg atttattgcc ggaaaatacg cctttattgc ttgagccgtg ggaatatttg
    10021 gaaggtggct attttgccga tttaaccaag tggttacacg ttaatgcgga aacatttggc
    10081 ttttatttcc cgtttgacgg taaacattct cgagtgggct ttgagccgtg gcacattagc
    10141 tatcgcccga tttcaaatga atatgagcaa cgctttaacg atgaaatctt aaaagctgcg
    10201 tggcaagatg aagaagtggc gggtaaggaa tgcttacttg aacattttga agaattacta
    10261 aaatgatcca attaattaac gaaacccaac aacacgacaa attccgccaa atttgcgaaa
    10321 aatggcagct ggttgaagat aaatccagcc cgttagcctt agtgctaacg gaggaacgat
    10381 tggaactacg caaattagac gaacccaagc tcggggcgat tgcagtgaat tttgtggacg
    10441 gtacgatggc acatcggcgt aaattcggtg gtgggcgagg tgaagccgtt gcgaaagcgg
    10501 tcggcattaa aggggattat ttgccaactg tgattgatgc gacagccggt ttagggcgag
    10561 atgcttttgt attagcagcg gttggttgta aagtgctgtt agtggaacgc aatccaattg
    10621 tcgctgcctt gttggaagat ggtttaaacc gagcttatca agatgtggaa atcggcagtt
    10681 ttatgcaaga aagaatgatc ttagccgatg ttcgagacat ttctcagcta gatccacaat
    10741 cccaaatggc tgaggtggtg tatttagatc cgatgtatcc gcacaaacaa aaaagtgcgt
    10801 tggtgaaaaa agaaatgcgg gtgtttcaac atttagttgg ggcagattta gattcggaca
    10861 gctttttctt accggcaaaa ggattggcaa aaaaacgtgt ggtagtgaag cgtccggact
    10921 atgccccgtt tttagcggag caaaagcctg atttttcaca caccaccaaa aatcaccgtt
    10981 ttgatgttta tctttctcac ctgaaaaatg attaaaggtg ggtcaggatc ggtttttaaa
    11041 aaactttaac ttgaaaagct gcctatgcga taggcaagcg gttattttta cagtaaaatt
    11101 tacaaattat gttatcgttt atttatattt aaaaaggcgg ttatcgtgcc acaacgtgat
    11161 tatgtcgctc gttccaacga gaaaaaaagt aaaaaaaatc aaaaagaaag taatgttaaa
    11221 aagattttaa tgcggattat cggggtaatt ttattcttcg gtattggttt atggtttttg
    11281 aaatccagtg cacctgtacc aacagttccg tcagcaccgc agcctgctaa ttcacagact
    11341 aaaagcgaat taccaagtcg accggaagag acgtggagct atattcgtga tttagaaacc
    11401 cgtacggtaa ttaccgataa tagccaaact tcacaagaac gtttggcaca attaacggcg
    11461 gaacaaaagc agcaaattga agaaagacgc aaacaagaag aagcacgctt agccgctgag
    11521 caagctcaac aaaagcctgc gaccgatgta tctgctacag aattggctcc gaaaacagag
    11581 gaagttaagt cgttaacgga agaagaatta gcagcaaaaa aagcacagga gcaagcttta
    11641 gcacaaaagc aagcggaaga gaaacgcaga caagcagagc ttaaaaaaca gcaggaagcg
    11701 aaaaaagagc agccggctaa aattgtagca agtgctgcaa cactggcaga taaagctgca
    11761 aatcaggcgg gtaaatttgg gttacagtgc ggtgcattta aaaataaagc ccaagccgaa
    11821 aatatgcaag caagattggc aatggcaggt tttaacgccc gtatcgcaag cagtgccgat
    11881 tggaaccgtg tttttgtcgg cccgataggt gacagagcgg caacttccag agctcaatcc
    11941 aatgcacgca gtgtagcgga atgtgtgatt gtggcgatgt aaaattgatt gaaatattga
    12001 agagagctat aggctctctt tttttatatc ccaatcgcat atttcaaggc ttgctttttg
    12061 atgggtgaca ctttatcagc caatactaaa ccgacattgc gggcaatttt gagcggtaat
    12121 aaatcggtct taaacgcttt ataaaacacg tccatgcctg tttgcatcag taaattatcc
    12181 ggtttacgtt tttgctcata gcgttgaagc acctgctcac ttgcaaaatt tttgcctttt
    12241 ttgaccgctt gttcgatcac ctcaagcaag gttttaacat ctttaaagcc taaatttaca
    12301 ccttgtccgg caagcggatt aatggtgtga gccgcatcgc cgactaatac caccccgttt
    12361 tgcacatagt gctgagcgtg ctggcgggtt agcgggaaag cccctgaagc ctgcacctga
    12421 atgttgccta attctgcgtt gagccggctt gggaaatgtt gctcaatcgc aactcccagc
    12481 ttttctgctg gaagcatttt cagttcggca attttttgtg gcgaatcgta ccaaacaacg
    12541 cagccgtgat tgccggaaag cggtaaaaag gctcgagggc cggttggata gaattgttgc
    12601 caagtgccgc ttggagcagg tttttcggtg gtaacggtgg cgagtaaaca gtgttggcga
    12661 tattgccaag cggttaaacc aatgcccgcc cattggcgaa cctgtgaatt tgcaccgtct
    12721 gcggcaatca gcagtggggc agcaaaggtg ttgccatcaa ccgtcacttc ccaatactcg
    12781 cccgctttat ttgcaaaaat ttgctcaaat ccgaccgctt gtaggcagtt tggatattgc
    12841 tttaattgct cccataacgc aatttgaata acgttgtttt cgaccatatc gccgagcttt
    12901 tccaaaccca aatcagctgc cgaaaaaaga gtgttgaatc catcaatttc ccaggtttcg
    12961 agctgggtat aaggggtgct tctcattgca acaatttgct cccacacgcc caatttttct
    13021 aacagttgaa tcgagcccat actaatggcg gaaattcgca aatcgtagtc tgaatcagga
    13081 ttaaaggtcg gcagagggtt tttctccaac aaggctaaac gcagcccctg ttttgctaag
    13141 cctagagctg ttgctgcccc aatcataccg ccaccgatta caatcatatc taattcagtt
    13201 ttcatttttt cttccttttt agttaggcaa aatactgcta aaacgccttg aattgtagtg
    13261 catttcagat taggatcaaa ccgatttatc tatttatcta aggagcgttt tatgtcttgc
    13321 aaaactcatg caaaccacga gcacgaacat ggcgaaggct gtggtcatac tgctattaaa
    13381 cataacgacc atatcgacta tttacacgat gggcatttac accacaaaca cggcgatcac
    13441 tatgacgaac acgttttaga agtgaatgaa accaacccgg cagactgtaa tgccgcccat
    13501 tgctgcggcg accacgttca tggtgagggt tgcggacacg aagctgtgcc gcacggtgat
    13561 catatcgact acatcgtgaa cgggcgtttg caccaccaac acggcgacca ctgcgatgac
    13621 cacgggccgg ttgaaattgt gaaataaggt ttttgatggg aggttttagc ctcccattat
    13681 tatttttgcg atctcgctcg aaaaattgaa cattgctgct acccctcttc cgattttcct
    13741 tttatgctct cggcattgat ttctaacacc gaaatgtgat gaccttagcg attgtttaca
    13801 gccgagcctc cattggcgtt gaagccccgt tggtgacgat tgaagtgcat atcagcaacg
    13861 gacaaccaaa attaaccatt gtcggcttac ccgaagccac agtgaaagag gcaggtgatc
    13921 gtgtgcggag tgcgttgttg aacgccaatt ttatctatcc gccacaacgg atcacgatta
    13981 accttgctcc ggcagattta cccaaagaag gcggacgttt tgacttgccg attgcgattg
    14041 gcattctggc agcctcaggg caaattgatt ctgatttatt aacgcagttc gagtttttgg
    14101 gcgagttggc actgacaggg catttgcgag gagtgcacgg cacgattccg gcagtgattt
    14161 ctgccgataa agccaaacgg cagatgatct tagccaagca aaatgcgaat gaggcatcgc
    14221 ttgtttccaa tgccaccacc tactttgccg gctcgttgtt ggaggtggta aatatgctca
    14281 acaaacggga taaactgccg atttgtcagc acatttcgca acattctgcc gaaattcgcc
    14341 cgcttgtcag ccgagatctt actgatatta tcgggcaaca acacgccaag cgagccttaa
    14401 tgattgccgc tgccgggcaa cataatttgc tgtttctcgg accaccggga acgggtaaaa
    14461 caatgttggc aagccggctg gcggatttac tgccggaaat gaccgatgag gaggcgattg
    14521 aaaccgcctc ggtgaccagc cttgtgcaaa atgagctgaa ttttcagaac tggaaacaac
    14581 gcccgtttcg ttcgccccat cacagtgcat caatggtggc attagtggga ggtggctcga
    14641 tccccaaacc gggggaaatt tcacttgccc ataacggtgt gctgttctta gatgaattgc
    14701 ctgaatttga acgtaaagtg cttgatgcgt tacgtcagcc gttggaggca ggcgaaattg
    14761 tgatttcccg agccaacgct aaagtacaat ttccggcacg ctttcaatta attgcagcga
    14821 tgaacccaag cccgacaggg cattatcaag gcacgcataa ccgcacttcg ccccaacagg
    14881 taatgcggta tttaaaccgc ctttccggac ctttcttaga ccgtttcgat ctctctatag
    14941 aagtgccact tttgccacaa ggagcattgc aaagtgggac ggagaatcga ggagagacca
    15001 ccgagcaggt tcgcaagcgg gtgtttttag ccagaaaaat gcaatttgag cgagcaggta
    15061 aaatcaattc tcaactcacc acccgagaaa ttgagcgaga ttgccaatta tcggcacaag
    15121 atgccctatt tttagaaact gcattgacaa agctcggttt atcggtacga gcctaccacc
    15181 gtattttgaa agtttctcgg actattgctg atttagccgg cgaggcgaat attcaacaac
    15241 tgcatttagc ggaagcactt ggttatcggg cgatggatcg cttattgcaa cggttgcagg
    15301 gggagcccta acacctagca cggctgagcc gtactaggtt atatttagcc tacggctgat
    15361 taagccccac tggggctttt gtgcagcaga gctgcaccgt tatgcttaac cgattgcgac
    15421 cgtaggtcgc tgtcggagtg gagtatcaat aaccccaatt tctccacaaa atttttagca
    15481 ttagcccgat gagcgttatg ccctgcatta gcaatcagtt gtgttggtag ttggtggctt
    15541 gatgccattt tgcgaaattt ctgatccttt tcaccgataa aaaagacaat attcttatcc
    15601 gtctgcttga gtttttcggt gtagtcaggc tgtttggcga ggctggtggc ttccagcatt
    15661 tgagcaattt gctctccttg attgtgcttt ctgctatcaa tataacattc tctttccgta
    15721 tcgcttaaat ccgcaaaaac aggctgtttg taccaatctt caagcacttg ttcgatgggt
    15781 tcttgacgga aacggtttgc ccaatggcgg tcattttgcc ggcgaatctg gcggtcgttt
    15841 tctgtgctta agccgatatt cgccccttct aacaccacgc cctgcagatt cggattatcc
    15901 atatttagca cataatcgag tgccgctcgt ccaccgagtg agtagccgac taaatagaaa
    15961 ggtcgtgagc cgattaggct ttcaagggtg gcgtgtagtt gttgtcgcag gtcggcaaaa
    16021 tcggcacagg taatgtgctt actatttccg tgaaaaggaa ggtcaatggt aagcggtcga
    16081 atttgcggaa aattttgcaa atgttggaga acagcttgcc agtcttgttg tgagccgagt
    16141 agcccgtgta agaaaataac aggtgtgcct tgttgagcgt gccattgata ggaaagcata
    16201 gtcgatacat ttttacccct cgcaggattg gcgaggggca gttgtgatta ggcaatttcc
    16261 gcctgtgaaa tttgttttag caatgattta tacatattgc tgccgtcgtg ttcatttact
    16321 ttgatttcca caatggtaac acctttacga gcataggcgt gtttgagttt ggtttttaaa
    16381 tcagcccaag taaacggacg gatatattcc agcccaaaca ttgtcgccac ttgtgcaaat
    16441 tcaaagttat gtgccaagcg gtaatattga tctttcgctt tgctttcaac cggtaacata
    16501 tcaaaaattg ccccaccgct gttattcacc acaaataaaa tggtcggctg gttaattttg
    16561 gtgagcaatg caattgagtt aagatcgtgt aatgcggaaa tatcacctac cacaccgaca
    16621 gtcgggcggt cgctaccttt tgcaatgcct gccattgtgg caattaagcc atcaatgcca
    16681 cttgccccac gattagtgta aaccgggtag ccttcaggca atttgcataa ggcatcaact
    16741 aaacgcacaa ataaactatt gccgatgaat agattaccat taattgctaa aatatcttga
    16801 atattatgtg caagtgatgc ctcacttaaa cttccaccca cttgctgctc aataaaggtc
    16861 gcacagaatt gtgaaagtgc taagggttca agcaaccacg gcttttggcg aagtggtggg
    16921 tgaacacgca agaagtggtg tgctttagca acaaaacgag tttgatgatg tgcgttcggg
    16981 ttaatgtaat cttgcgactc atcaaccagc caaaattcgc cttgataggc ttttaagaac
    17041 tcattcactc gtttgctgac aatttgtgtg ccgaattgaa tgatgatatc ggcttgcaat
    17101 aaacgttgtt tcacggtttc gttagagagc caaatatccg catacggtag gcttgcttca
    17161 atgcaagatt gcacatcgct taataagcac cagcccattg tttccgccca gttctttaag
    17221 cctgtgcctt gctctggcgg taatttgcct accacaataa caccacgttt ggttcgccag
    17281 taatcccaat tttcgtgcat cgagacttca ctttgaattg cctgttggtc aatccatttg
    17341 gtttgggaat tattcaacca accttgaatt gggcgtaacc aaggggtatt tagaatttcg
    17401 ttaatgtcag cttcataaag cggctcttca aaaggggcat taatgtgcaa cacgcctcct
    17461 tgttgagctt gagtagtgca agcctgttca atggttgaaa ctaaccagct tgcattataa
    17521 gcctcgtttg cttttggtaa gtttatgctc gcagcaggat aatttgcaaa aatgccttgt
    17581 tgagtaatgg cttggtttgc accacaacca attaattctg ttgggcgatc tgcagaaaga
    17641 ataatcaggt tttgatggct aaggcttgcc tcaattaccg cagggtaaag attagcaacc
    17701 gctgtgccgg aggtaacaat caccgcaaca gggctattag ttgctttggc aatgcctaac
    17761 gcataaaagc ctaaaccacg ctcatcaaag tgggtgtggc attctgcata ttgggtttgc
    17821 tgaagttgta ctgcctcaag ggttaatggg gtggaacgag aacccggtgc gatacaaaaa
    17881 tgctttacgc cataacgcat taacgcactt aaaatcactt ttgcccaagt gcgattaaaa
    17941 gaacttacac tcatattctt ctctactcat taataattcg ataaatagcc caaattgtag
    18001 caaaaagtta aattattttg gtaagttttt agcaaaatag gtgattttta ataaaattac
    18061 cgcccaatgc tgatgagtag cattgggcgg taatcataga tttgtaaaaa atttacaaaa
    18121 aataaccgct tgtattaatt aattccaatc caattcggta acgccatcga gatagcagga
    18181 atgtaggtga ttaacaccaa gaagcctaat agcagtaata gccacggcat tgcggcttta
    18241 attacatcag acagtggcat tttcgatacc gcagaggcaa cgaataagtt caagccgatt
    18301 ggtggggtga tcaagccgat ttccatattc accaccataa taatccctaa gtggattggg
    18361 tcaatgccga gttgtaccgc aatcgggaat aaaattgggg caaggattaa gataatcgca
    18421 gacggctcca taaatgcccc cgcaattaat agcacgatgt ttaccactaa taggaatgtc
    18481 cacggctgta aattccattc aaccactgta ttagtgatga gctgtggaat ttgttcggtc
    18541 gtcagaacgt gggcgaataa cattgcattg gcaatgataa acatcaacat tacgcttaat
    18601 ttggcggatt ccagcaagac tttcgggcaa tcacgcagtt tgacatcttt atagataaag
    18661 acagccacaa accacgagta aaccgctgct accgctgcag cttcggttgg ggtgaagatg
    18721 ccgctgtaaa taccgcctaa gataatcacc atcagcaata agccccaaat cgctttacgg
    18781 gcggcggtaa accactcttt taccgttgca cgaggctgtg ccggtaagtt tttaatacga
    18841 gcgacaacgt agatagcaat catcaatacc aagccaagca ttaagcccgg cacaacccct
    18901 gccataaata atttaccgac tgaggtttca gttgaagcgg catataccac cattactacc
    18961 gatggcggaa ttaagatacc aagtgtacct gcattacaga taatccccgt accaaaaccg
    19021 accggatagc ctgaacgcac cattcctgca atggcaatcg aacctactgc tgctaccgtt
    19081 gcggggcttg agcctgaaag agcagcgaat agcatacaag acattaccgc cgcaatagct
    19141 aaaccaccac gaatatgacc gacggttgca ttagcgaaat caattaagcg ttttgctaca
    19201 ccgccagttg tcataaacgc acctgcaagc aagaagaatg ggattgcaag gagcgtatag
    19261 tgttctgagg tttcaaatag tttgatggct aaggagctga cagaatcttg gctgaaaaac
    19321 ataatagtaa cagcaccagc taaaccgagt gaaatcgcaa tcggcacgcc aagaaacatt
    19381 aagataaata acaagctaaa tagcactaaa attatcatta ttcttctcct tgtgcgagtt
    19441 tcattgcgtc ttcactttca tctgctaagc ctaagcccac ttgtttgccc tgtaaaatac
    19501 gcactaaaat ttcaataaaa cggataccga ttaaggcaaa accgacaggc ataattaaac
    19561 caacgtgcca ctgtttgagg tggaattgat gtaaatcttc tgctccaata tctgccacat
    19621 acatcgctga aatccactca tagctggcag aggcaattaa gaaggcatag gctaagcagg
    19681 cggcaatcgc aatcaatcct acgacttttt gggcgttgcg tgagagtttt ttcaccaata
    19741 catcgactcc gatatgccct gcggtacgca ccccataaga cgcaccaaag aagataagcc
    19801 aaccaaagca gactttggtt aaagccacgc tccaagtcat ttcttgagcc atttccataa
    19861 tccattcgcc taacggctca gcaaaactcg cggtaaacgg cacagcttcg gctaaatcaa
    19921 agaagacatt ataaaggttg ttaaacatca cataagtgaa ggtaacaagc gtcattacca
    19981 ttagcaaaat ggcgataaaa cactcctcaa aacgctccca gaaccatttt aaagaagaca
    20041 tttggcactc cataaaaatg tggtatcgat gttttctcgt aggggcgggt cttgtgcccg
    20101 ccccttgtat atctcaaatg agttaaacta agcaacacaa cccgttatcg gcatctcgtc
    20161 tcgtcccttg aaagcacttc gttgtgtagc ttagagagcc gataactttc atcacaaaaa
    20221 ccgaacagtt gcacgaacac aacccgaata caaggcaggt tacgatgaat gaacttaatt
    20281 tctgtggcat tgatgttgct aaacgtagtt ttgttgtcgg tatcagcagt cgaaaacaga
    20341 ccaaaacttt taccaacaac cccaaaggta tccaacaagc ggtggaatac ctgaaaaatt
    20401 gtgcaaatct aagcctagtt gtcttagaaa gcacaggcgg cttggaaatc ccactcgcca
    20461 aagcacttca tcgtgcggat tttcgggtgg tgattgctaa tccacgccaa acacatcagt
    20521 ttgcaatggc taaatcgttg gcgaaaaccg atgcaaaaga tgcaaaaatg ctggcatctt
    20581 acgccaaaat gctggttttg gacgatgagg ttgaaaaaca actttatctt ccgccaacac
    20641 ctgaaatgga gcaattagaa gcattagttt tacgccgtac ccaactggtt gaaatgcggg
    20701 tggcggagaa aaaccgcctt catcaagtcc acgacagcca gcgggaaagt gtccaacagt
    20761 tgattgccca ttttgaccgt ttaattgatg agctggaaac acaaatcaat caagcgactg
    20821 ctgtatttga cgacacttta aaaaagttca atgacatcaa agggataggt gcaatcacga
    20881 gtgcaacttt gatgtgaatg ctccctgaac tcggcaagct caaccacaag caaatcgctt
    20941 cactggttgg tgttgcccca ctcccgaaag agagcggtag ccagaaatgg catagtcgct
    21001 gttcgggtgg gcgacaagcg gtacgaaacg tactttataa tgcggcgaat gtcgcccgcc
    21061 aacacgaacc gaagttcaag gcattttatg aacggctgat tgctcgtggc aaaccgttca
    21121 aagtggcggt aaatgcctgt atgcgtaagc ttttaaccgt gattaatgcc atcgtccgtg
    21181 atggctcaca gtggaatgct cacgcggttt aattaacgaa tttgtatctt gccaaaaatg
    21241 ttggggagat acagttgcta cacatcattt cacattatca ataaaaataa gaatgcgacg
    21301 agcctaaaaa gccaccgcat tcgctcaaaa gaacaataga taaagagact actgtttatt
    21361 tgccgcttcg gccgctttga ttaaatctgc accgatagca tcttcaaact gcttccatac
    21421 agggcgcatt gcttcacgcc atttttcgcg ttgctcatca gttaaagtga tgatttgcga
    21481 agcacctgaa tcgacgattt tttgcttatc gctttggttg agatcgtgag attgtttgtt
    21541 cacttccaca gacacctcat ctaagatttt ggttagttct gtacgcacat cttcaggaat
    21601 tttgttccag aaatcggtgt tcacgataac catataagat aataagccgt gattagatgc
    21661 agtaatgaat ttttgtactt cgtgaatttt ttgtgagtag atgtttgaat acgggttttc
    21721 cgcaccgttt acaacgcctg tttgtaagcc ttgatacatc tcgccgaatg ccattttacg
    21781 cggtacagct tttaatgctt tgaactgtgc atctagcact tctgaagcct gtacacggaa
    21841 ttttaaacca cgagcatctt tcggctcacg taactctttg ttcgcagaaa gttgttttaa
    21901 atcattgttc cagtaagata aacctgtaat acctttgtct tccattgatt ttaacaatga
    21961 ttgacctgct tcagattgct caaaacgttc aaccgctttg atatcgtcaa acaagaacgg
    22021 tagatcgaaa atttgaattt ttggtgtgta tttatcaaat ttagccagtg atggagcaag
    22081 catttgtacg ttatttaaca ataatgcttc catctcttta ccgtctgcat aaagtgaaga
    22141 gtttggataa acttccactt tcactttgcc gtttaagcgt tcgtccacta atttttggaa
    22201 cattaacgca ccctgacctt tcggggtctc gtttgctaca acgtgtgaga atttgatgac
    22261 gattgggtca ttagcaaaag cagataccga gaatgcagca gttacagcta atgccgcagc
    22321 caattttttg aatggtttta acataataat ttactcc
//
LOCUS       DANLUT010000018        22313 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLUT010000018 DANLUT010000000
VERSION     DANLUT010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22313
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            21..1163
                     /gene="tuf"
                     /locus_tag="PXB38_000630"
     CDS             21..1163
                     /gene="tuf"
                     /locus_tag="PXB38_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL5352984.1"
                     /translation="MGTIGHVDHGKTTLTAAITTVLAKHFGGAARAFDQIDNAPEEKA
                     RGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT
                     REHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS
                     ALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRV
                     ERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERG
                     QVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGV
                     EMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK"
     gene            1455..2753
                     /gene="tig"
                     /locus_tag="PXB38_000631"
     CDS             1455..2753
                     /gene="tig"
                     /locus_tag="PXB38_000631"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL5352985.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            2869..3321
                     /locus_tag="PXB38_000632"
     CDS             2869..3321
                     /locus_tag="PXB38_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5352986.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNGFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            3342..3842
                     /gene="secB"
                     /locus_tag="PXB38_000633"
     CDS             3342..3842
                     /gene="secB"
                     /locus_tag="PXB38_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL5352987.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            3949..4959
                     /gene="gpsA"
                     /locus_tag="PXB38_000634"
     CDS             3949..4959
                     /gene="gpsA"
                     /locus_tag="PXB38_000634"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL5352988.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRIHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            4975..5790
                     /gene="cysE"
                     /locus_tag="PXB38_000635"
     CDS             4975..5790
                     /gene="cysE"
                     /locus_tag="PXB38_000635"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL5352989.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            5839..8016
                     /locus_tag="PXB38_000636"
     CDS             5839..8016
                     /locus_tag="PXB38_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S6"
                     /protein_id="HDL5352990.1"
                     /translation="MQLTFIQMFCPLLSGLTIFTICYVFPIVVIECLFCHQLMLEFAK
                     FYFLDDKYMKPASFKLSLISAFVGLSLAQLSYSSTVRGDIDYQYFRDLAENKGKFYVG
                     AKNVEIFNKQGDKIGIALENIPMIDFSVITRGGGYATLTKPQYIVSVEHNRGYRTVQF
                     GDSGSENPDNHHFNYQLVSRNDYDPKGSKAIQGFTHNDYQTPRLHKLVTETAPAEQSQ
                     EKNYDLYRDASIFPMFIRAGSGTQYILAEKNAVKEKLADPYAYLIGGTTLKLTSNNAN
                     TFVFKGNVFDDSYSPLSSHPQQGDSGKTFTWTALGNSSRITGATAELVVDLADTSLPD
                     PTTGKPHKPSLHHGKTLKISGDGNTLNLANNINQGAGALYFSGNAVVTGANEMTTWLG
                     AGISVDKNKNVEWQVHNPVGDRLSKIGEGTLTVSGKGKNLGSISVGDGTVILNQQAGE
                     NGEKSAFSEVGIVSGRPTVILNSADQVDPNSIYFGYRGGRLDLNGNSLTFNRIQNVDD
                     GARIVNNNAGTAANISLVGQVFTANDVRTINFGEGYNADLFRSQGAYFVLENNAWKFI
                     SWNHDDAKKYVVEKKNKALENQLYAYNGYFGESDSSRENGKLNIHFKPINAGGKLLLT
                     GGTTLDGILSAENDAEIILSGRPIPYARQVLDENKKTINKEIIKEGEWINRTFSATTF
                     QAKDNGKIEVSRNVVEVNGNFNLSDNATAQVGFTQGKSQSCVR"
     gene            8029..8460
                     /locus_tag="PXB38_000637"
     CDS             8029..8460
                     /locus_tag="PXB38_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopropylmalate isomerase"
                     /protein_id="HDL5352991.1"
                     /translation="MASCNLSVLSDKDLHSWQRTTVNSDIKLTQNARFELGSKADLIG
                     TIESNGDSQINLRNGSSWVMTGNSNVNKLNVDNATITLDNNVGEPNTLNINSLSGSGV
                     INFITYFAQTISDLINVEHASGAFKAKISQIGTPTTQRGVL"
     gene            8457..8609
                     /locus_tag="PXB38_000638"
     CDS             8457..8609
                     /locus_tag="PXB38_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5352992.1"
                     /translation="MIFYKYINLKKASHLNFKVAKYIDEQGKSRKMYLMTQDGFTLLV
                     MGFTHK"
     gene            8606..8845
                     /locus_tag="PXB38_000639"
     CDS             8606..8845
                     /locus_tag="PXB38_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5352993.1"
                     /translation="MNRTFALNKIAVERCKQDFPDCYHFKKLMAEECTELADRLKMGL
                     VLMAELKTTSTLTSDQNRHFKAFRNGAKYLIKQLE"
     gene            complement(8907..10094)
                     /locus_tag="PXB38_000640"
     CDS             complement(8907..10094)
                     /locus_tag="PXB38_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5352994.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFP
                     PLV"
     gene            complement(10292..10658)
                     /gene="ssrA"
                     /locus_tag="PXB38_000641"
     tmRNA           complement(10292..10658)
                     /gene="ssrA"
                     /locus_tag="PXB38_000641"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            10824..11783
                     /gene="rpoH"
                     /locus_tag="PXB38_000642"
     CDS             10824..11783
                     /gene="rpoH"
                     /locus_tag="PXB38_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL5352995.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            11924..12232
                     /locus_tag="PXB38_000643"
     CDS             11924..12232
                     /locus_tag="PXB38_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL5352996.1"
                     /translation="MINITDKQIDPTFYQRADGFINVANAHLKNIAPNQVSNAMLFGC
                     ARFNAYVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD
                     "
     gene            complement(12250..12552)
                     /locus_tag="PXB38_000644"
     CDS             complement(12250..12552)
                     /locus_tag="PXB38_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5352997.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(12524..12814)
                     /locus_tag="PXB38_000645"
     CDS             complement(12524..12814)
                     /locus_tag="PXB38_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5352998.1"
                     /translation="MKIYTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNE
                     FRIQSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
     gene            complement(12952..13491)
                     /locus_tag="PXB38_000646"
     CDS             complement(12952..13491)
                     /locus_tag="PXB38_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL5352999.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFFTVAGKMAQ"
     gene            13562..14245
                     /locus_tag="PXB38_000647"
     CDS             13562..14245
                     /locus_tag="PXB38_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL5353000.1"
                     /translation="MSIAENLSQIHQQIQQISQQHQRDDVRLLAVSKTKPVEAIQEAI
                     EGGQRAFGENYVQEAIEKIECFANRSDLEWHFIGPLQSNKTKLVAAHFDWIQTVDRLK
                     IAERLSEQRPIGKAPLNVLIQINISDEASKSGIEPDEMLSLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKIAFCKMQQLFHRLQAEFEGIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARDYR"
     gene            14436..16283
                     /gene="typA"
                     /locus_tag="PXB38_000648"
     CDS             14436..16283
                     /gene="typA"
                     /locus_tag="PXB38_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL5353001.1"
                     /translation="MQNVDINKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGDTRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGATD
                     EQLDFPIIYASALNGVAGLEHEELAEDMTPLYEAIVKHVQPPQVELEAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTVVGSDGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETPNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(16332..16769)
                     /gene="rimI"
                     /locus_tag="PXB38_000649"
     CDS             complement(16332..16769)
                     /gene="rimI"
                     /locus_tag="PXB38_000649"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL5353002.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(16762..17184)
                     /locus_tag="PXB38_000650"
     CDS             complement(16762..17184)
                     /locus_tag="PXB38_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL5353003.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            17313..18302
                     /gene="rsmC"
                     /locus_tag="PXB38_000651"
     CDS             17313..18302
                     /gene="rsmC"
                     /locus_tag="PXB38_000651"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL5353004.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGSIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FALPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     misc_feature    18432..18554
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            18576..19049
                     /locus_tag="PXB38_000652"
     CDS             18576..19049
                     /locus_tag="PXB38_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5353005.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRQVEFYNLDAIISVGYRVNSKAGT
                     QFRIWATARLKDYLVKGYALNERRLQERGIEFEQVIGLLSQYTGCLSLVGGRKFA"
     gene            19116..19556
                     /locus_tag="PXB38_000653"
     CDS             19116..19556
                     /locus_tag="PXB38_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5353006.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            19586..20653
                     /gene="hisC"
                     /locus_tag="PXB38_000654"
     CDS             19586..20653
                     /gene="hisC"
                     /locus_tag="PXB38_000654"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5353007.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEASLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            20832..21920
                     /gene="hisB"
                     /locus_tag="PXB38_000655"
     CDS             20832..21920
                     /gene="hisB"
                     /locus_tag="PXB38_000655"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL5353008.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            22015..>22313
                     /locus_tag="PXB38_000656"
     CDS             22015..>22313
                     /locus_tag="PXB38_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353009.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKEDFERTFF"
BASE COUNT         6743 a         4381 c         4983 g         6206 t
ORIGIN      
        1 gtacaaaacc gcacgttaat gtgggtacaa tcggccacgt tgaccatggt aaaacaactt
       61 taacagcagc aatcactacc gtattagcaa aacacttcgg tggtgcagct cgtgcatttg
      121 accaaatcga taacgcgcca gaagaaaaag cgcgtggtat cactatcaac acttcacacg
      181 ttgagtacga tacagcaact cgtcactacg cacacgttga ctgcccggga cacgcggact
      241 atgttaaaaa catgattacc ggtgcggcac aaatggacgg tgctatctta gtagtagcgg
      301 caacagacgg tccaatgcca caaactcgtg agcacatctt attaggtcgc caagtaggtg
      361 taccatacat catcgtattc ttaaacaaat gcgatatggt agatgatgaa gagttattag
      421 aattagttga gatggaagtg cgtgaacttc tttcacaata cgacttcccg ggtgatgaca
      481 ctccaatcgt acgtggttca gcgttacaag cgttaaacgg cgttgctgaa tgggaagaga
      541 aaatccttga attagcaaac cacttagaca catacattcc agagcctgag cgtgcgattg
      601 ataaaccatt cttattacca atcgaagacg tattctcaat ttcaggtcgt ggtacagtag
      661 taacaggtcg tgttgagcgt ggtatcatcc gcactggtga tgaagttgaa atcgtaggta
      721 tcaaagatac agcgaaaaca accgtaacag gtgttgagat gttccgtaaa ttattagacg
      781 aaggtcgtgc gggtgagaac gtaggtgcat tattacgtgg tactaaacgt gaagaaatcg
      841 aacgtggtca agtattagcg aaaccgggtt caatcactcc acacacagac ttcgaatcag
      901 aagtttacgt attatcaaaa gaagaaggtg gtcgtcacac tccattcttc aaaggttacc
      961 gtccacagtt ctacttccgt acaacggacg taacaggtac aatcgaatta ccggaaggtg
     1021 tagagatggt aatgcctggc gacaacatca aaatgactgt tagcctaatt cacccaatcg
     1081 caatggacga aggtttacgt tttgcgattc gtgaaggtgg tcgtacagta ggtgcgggcg
     1141 ttgtagcgaa aatcatcaaa taattaagat tgtttgataa agcgaaaagc taaataaaaa
     1201 ctagaaagag gcatatcgaa aggtatgcct cttttacttt tatgttgatt aagctagcca
     1261 tatcatttca tttgcaaaaa tcggtgaaaa aagaccgctt gtaggcaagc ccattgacaa
     1321 gcggtcagat tttagggatt ttttacaaaa ctgtttattt gcgaatgagt ttcttctcga
     1381 cagtttcttg atagaacgct acaataaccg tctatttgta tatctttttt atatccctaa
     1441 accgaggttt aagaatgtca ttttcaattg aaacattaga aggcttaaaa cgccgtgtta
     1501 ctattaacgt accagctgat aaaatcgaag cagcatacaa agaacaatta aaaggctatg
     1561 cgaaaaatgc tcgtgtagat ggcttccgta aaggtaaagt gccacactca attatcgaac
     1621 aacgttttgg tattgcagcc cgtcaagatg tgttatctga tgaaatgcaa cgtgcattct
     1681 ttgaagccgt cattgctgaa aaaatcaact tggcaggtcg ccctactttc acgccaaaca
     1741 actaccaacc aggtcaagac ttcagcttta ctgcggaatt tgaagtattc ccagaagtgg
     1801 aattaaaagg tttagagaat atcgaagtag aaaaaccggt tgttgaaatc gcagacgctg
     1861 atttagacaa aatggtagat gtattacgca aacaacaagc gacttggtca gaaagccaag
     1921 aggctgcaaa agccgaatct cgtgtaacta ttgatttcgt tggttcagta gatggtgaag
     1981 aattcgaagg cggtaaagca tcagacttcg tgttatttat ggggcaaggt cgtatgattc
     2041 cggggtttga agacggaatc gtaggtcgta aagcgggtga gcaattcgac attgatgtga
     2101 ctttcccaga agaataccac gctgaaaact taaaaggcaa agcagcgaaa tttgcaatta
     2161 ccttgaaaaa agtagaagag atggtattac cggaattaac cgaagagttt gtgaaaaaat
     2221 tcggtaatgc aaaatcagtg gaagaattac gcgcagaaat taagaaaaat atgcaacgtg
     2281 aacttaaaaa tgcagtcact tcacgtgtga aaactcaagt aatcaacggc ttaattgctc
     2341 aaaatgatgt tgaagtgccg gctgctgcgg ttgaagaaga aatcaacgta ttacgccaac
     2401 aagcggtgca acgttttggt ggtaagcctg aaatggcagc tcaattaccg gctgaattat
     2461 ttgaagcaga agctaaacgc cgtgttcaag tgggcttatt attatcttca atcatcggtt
     2521 ctaacgaatt aaaagtagat gaaaaacgtg ttgaagagat gatcgcagat atcgcttcag
     2581 cttacgaaca accggctgaa gtggttgctc actatgcgaa aaaccgtcaa ttaactgaaa
     2641 atatccgcaa tgtggtatta gaagagcaag cggttgatgc agtgctagcg aaagcgaaag
     2701 tgactgaaaa aacaatgtca tttgacgaag taatgtcaca acaagctcaa taatttcctt
     2761 ataaggtggg cttttgctca ccttttatta cttttacaag cggttaaatt tagtgataaa
     2821 tttgcatcaa aacgaccgct tattttttga tgttaaggaa attgaattat ggaacaacta
     2881 acttttgctc aacaattaga gcaatttttt gccaatcata ccttgatggt gtttgcttgg
     2941 gttgcattat tgattgcggt aatttttagc ttttataaaa gtgcaacgca aaaatataaa
     3001 attgtcgata acgcacaggc tacacagctg attaataaag aagaggcagt agtggttgat
     3061 ttacgttctg atgaagagtt ccgtgccggt catattattg atagcattca cgtgttaccg
     3121 tcagacatta aagcagctaa aatcaatcag attgataaat acaaagctcg cccggtaatt
     3181 gtagtagata ctaatggctt cacttcaggt ggtgttgcgg cagatcttgc taaacaaggc
     3241 tttagcagag tttatgtatt aaaagaaggg attggcggct ggcgtgcagc aagcctacca
     3301 actattaaaa aacataaata atctattatt aaggaaattt tatgtcagaa gaaaatcaag
     3361 ttgcatcaac agaagaagct acacaaaccc cttttgagct tcaaattcaa cgcatttatg
     3421 taaaagatgt ttcatttgaa gcaccaaatt taccgactat tttccaacaa gagtggaaac
     3481 cacaattagg ctttgagtta gatactgaaa ccaaagaaat tggtgaagat ttatacgaag
     3541 ttaccttaca cattacggtg caaactacgt tagaagacag caatgatgtc gctttcattt
     3601 gtgaagtaaa acaagcaggt gtgtttacta ttaaaggttt agaaggcatt caacttgctc
     3661 actgcttagc ttcacaatgt ccgaatgtgc tttatcctta tgctcgtgag ctaatctcaa
     3721 gccttgtgaa tcgtggtaca ttcccggcat taaatctctc accggtaaac tttgatgcgt
     3781 tatttatgga ttatctccaa cgccaagaag aaagtgcaga agagccggct ttagcgaact
     3841 aagcatttta gatagaaaat aggtatgcaa ggcataccta tttttttaca agcggttatt
     3901 ttttctacta ttttttgcaa ttttctaaat aagccgaaca gaggaaatat gagtgaaatc
     3961 tattctgccc caatcacggt attaggtgca ggttcttatg gaacagcttt agccattgcc
     4021 ctttctcgaa atggtcacaa aacctattta tgggggcata atcccgacaa aatggccgtt
     4081 ttggcatcag agcgaatgaa ccaagatttt ctgcctgata ttgtattccc ggaagcctta
     4141 gaaattgtcg cagatcttgc tacagcggta caaaaatcga aagatctgct gattgtggtg
     4201 ccaagtcatg tattctctga agtattggct caaatcaagc cttttttgtc ccaagatcac
     4261 cgtataatgt gggcaaccaa agggctggag cgagataccg ggcgtttgtt gcaaacggta
     4321 gctaaggaaa ttttggggga aatttacccg cttgcggtgc tttccggtcc gacttttgcc
     4381 aaagaactgg cggcaggctt gccaacagcg atttcgcttg cctcaactga tcctgttttt
     4441 gccgatcaaa tgcaaaaacg gattcactgt tccaaagcgt tccgagttta cctcaacaat
     4501 gatattatcg gtgtgcaact cggtggggct attaaaaatg tgattgcaat tggtgccggt
     4561 atttcagacg gaatgggatt cggggcgaat gctcgtaccg ccttgattac tcgagggctg
     4621 gcggagatta gccgtttggg tgtttcgctc ggggctgatc cgaaaacctt taccggaatg
     4681 gcggggcttg gagatttagt gctgacgtgt accgataacc aatcccgaaa ccgccgattt
     4741 ggtttggcgt tagggcaagg aaaatcggca gaagtcgcga tagcggaaat cggtcaagtg
     4801 gtagaaggat tttataatac caaagaagcc tatttgctcg ctcaaacaca gggcgttgaa
     4861 atgccgattg tagaacaaat ttaccaaatg ttattttgtg gcaaacaggc ttcggatgtg
     4921 gtgaaaacct tgttggggcg tgaacgaaaa ggcgaataaa gaaaggagaa taaaatgcag
     4981 cagagtgaaa ttaatcagat ttggcaagca attcgagatg aagccaaaga gctggcgaat
     5041 tgtgaaccta tgttagcaag ttttttccac gctaccattt taaaacacca taatctaggc
     5101 gatgcgttaa gttatatttt ggcgaataag ttagaaaacc cgattatgcc ggcaatcgcc
     5161 ttaaaagaaa ttattgagga agcttatcga gcagagccac aaattattgc tagtgcagct
     5221 tgtgatatta atgcggtcag aactagagat cctgcggtgg acaaatggag tacacctctg
     5281 ctgtacttaa aaggcttcca cgctttacaa agctatcggg tgacgcatta tctttggaat
     5341 caaggcagga aagcattagc ggtttattta caaaatgaaa tttctgttgc ctttgatgtg
     5401 gatattcatc ctgcggcaaa ggtcggttgc ggaattatgt ttgaccacgc caccggtatt
     5461 gtggtgggtg aaacctctgt gatcgaaaat gatgtctcga ttttacaagg tgtaacacta
     5521 ggcggtacag ggaaagaaaa tggcgaccgc cacccgaaaa tccgtgaagg cgtgatgatt
     5581 ggagccggtg caaaaattct cggtaatatt gaaatcggac gctattctaa aatcggggca
     5641 aattcagtgg tgctacaacc tgtgcctgat cacgccacag cagcaggtgt accggctcgc
     5701 attatcggca aatcctctga acaaaaaccg gcttttgata tgaatcaata ctttgaagat
     5761 gagcaaggtt tgtttggtga tgggatttag gtaagagtta ttcctttaat ttatgattta
     5821 gacattgcta agtacaagtt gcaattaacc tttattcaaa tgttttgccc gctcttaagc
     5881 gggcttacta ttttcactat ttgctatgta tttcctatcg ttgtaattga atgcttattt
     5941 tgtcatcaat taatgctaga attcgccaaa ttctattttt tggatgataa atatatgaaa
     6001 ccagcctctt ttaaactctc tttaatttct gcattcgtag ggctgtcatt ggcacagctt
     6061 agttatagtt ctacggttcg tggtgatata gattaccaat atttccgaga tcttgcggaa
     6121 aataaaggaa aattttatgt cggagcgaaa aatgttgaaa tatttaataa gcaaggtgac
     6181 aagataggta ttgctttaga aaatattcca atgattgact tctctgtgat tacacgagga
     6241 ggaggttatg caaccctgac taaaccacaa tatattgtga gtgtagagca caacagaggc
     6301 tatcgaacag tgcagtttgg tgattctggt agtgaaaacc cagataatca ccattttaat
     6361 tatcaattgg tttcacgcaa tgattatgat ccaaaaggga gtaaagccat tcagggattt
     6421 acgcataatg actatcaaac gcctcgtttg cataaactag taacagaaac agcaccagca
     6481 gagcaatccc aagagaaaaa ttatgatctg tatcgtgatg caagtatttt tccaatgttt
     6541 attcgtgcag gttcaggtac acaatacatt ttagctgaaa agaatgctgt aaaggaaaaa
     6601 cttgcggatc cgtatgctta cctaattggt ggaaccacat taaagttaac gagcaataat
     6661 gctaatacct ttgtttttaa aggcaatgta tttgatgata gttacagccc tcttagctct
     6721 catccacagc aaggtgatag tggaaagact ttcacttgga ctgcacttgg aaatagtagc
     6781 aggattacgg gggccacggc tgaattagta gttgatttag ctgatacctc attgcctgac
     6841 ccaacaacag gtaagccaca taagccatct ttacaccatg ggaaaacgct taaaatttcc
     6901 ggagatggca atacccttaa tttagctaat aatattaatc agggagccgg agcgctatat
     6961 ttttcaggta atgcggttgt aaccggtgct aatgaaatga caacgtggct tggggctggg
     7021 atatctgtag ataaaaataa gaatgtagaa tggcaagttc ataatccggt gggagataga
     7081 ttatctaaaa ttggagaagg aacgctaact gtttctggta aaggcaagaa tttaggatca
     7141 attagtgttg gagatggcac agtgattctt aaccaacaag cgggcgaaaa tggtgaaaaa
     7201 tcggcattta gtgaagttgg gatcgttagt ggacgaccaa cagtaatctt aaatagcgct
     7261 gatcaagtag atcctaacag tatttatttt ggttatcgtg gcggtcgttt agatttaaac
     7321 ggtaacagct taacatttaa tcggatccag aatgtcgatg atggagcgag aattgttaat
     7381 aataatgcag gtactgctgc gaatatttcc ttagtaggcc aagtatttac agctaatgat
     7441 gttcgtacaa ttaattttgg agaaggctat aatgctgatc tgtttcgtag ccaaggcgcc
     7501 tattttgtgc ttgagaacaa tgcgtggaag tttataagtt ggaatcatga tgatgctaaa
     7561 aagtatgtcg ttgaaaagaa aaataaagca ctagaaaatc aactttatgc ttacaatggc
     7621 tattttggcg aatctgactc aagcagagag aacggaaagt taaacattca cttcaagcct
     7681 attaatgcag gggggaagct ccttttaact ggaggtacca cactagatgg gattttgtca
     7741 gcagagaatg atgctgaaat tattttatcc ggtcgcccga ttccatatgc acgccaagtt
     7801 cttgatgaaa ataaaaaaac aattaataag gaaattataa aagaaggtga atggattaat
     7861 cgaaccttta gcgcaacaac ctttcaagct aaggataatg ggaaaattga agttagccgt
     7921 aatgtagttg aagtaaacgg taattttaat ttgagtgaca atgcaacagc tcaagttggt
     7981 ttcacacagg ggaaatctca atcatgtgtt cgttaggatc gtaccggcat agcaagttgt
     8041 aatttatctg tgttatctga taaggattta catagttggc aacgcactac agtcaatagt
     8101 gatattaaat taactcagaa tgcacgtttt gaattaggta gtaaggctga tcttattggg
     8161 acaattgaaa gcaatggcga tagccaaata aacttgcgaa atggttctag ctgggtaatg
     8221 acaggaaaca gcaatgtcaa taaattgaat gtagataatg cgacaatcac cttagacaat
     8281 aatgtgggtg agccaaatac tttaaatatt aatagcctta gcggaagtgg ggttattaac
     8341 tttatcactt actttgctca aacaataagt gatttgataa atgtagagca tgcaagcggt
     8401 gcttttaagg caaaaatttc ccaaattggc acacccacta cgcaaagggg cgttttatga
     8461 tcttctataa atacattaat ttgaagaagg ctagccacct caattttaag gtggctaaat
     8521 atattgatga acaagggaaa tcaagaaaga tgtatttaat gacccaagac ggctttacgc
     8581 ttttagtgat gggctttacc cacaaatgaa ccgcactttt gccctaaata aaatcgccgt
     8641 tgagcggtgt aagcaggatt tccccgactg ctaccacttt aaaaagctga tggcggagga
     8701 atgcaccgaa ctcgccgacc gtttgaaaat ggggcttgta ctgatggcgg aattaaaaac
     8761 aacaagcacc ctaacaagcg accaaaaccg ccattttaaa gcgttcagaa atggggctaa
     8821 gtatttaatc aaacagcttg aataaacggc tatacacgtt gccaacgtgg acaagggcga
     8881 atttgagccg acaccatata acccgattaa acaagcggag ggaaatccgc ccacacttgg
     8941 agcagtttaa aacgttgctc taggcgttcg cctctatcat aggcggcttt gattcggtcg
     9001 ctgtttaaat gcgataaggc aacctcgatt aaatcgctat tgtagccttt ctcattaaga
     9061 taagtggagg cgatggcccg caagccgtga gccactaatt tgcccttgta gcccattcgt
     9121 ttgatcgcac cgttggcggt ttgagtattg acgtgcgttt gtgggttctt cacgctaggg
     9181 aataaatacg ttttaccgcc acttagcttt ttaatctctc gcaaaagtgc gattgcttgg
     9241 cgtgagagtg tgattttatg ctcaatgcct cgcttcatat tttccgccgg tatcgtccac
     9301 agtttggctt tttcgtctat atccgcccat tttgccttag ccgcttcatt cgggcgggtc
     9361 attgtgagta actgccacag aattaaatag cgtgtctgta aatgaatttg ggcgttttgt
     9421 aaggtgtata aaaactcgcc taaatcttcc ggcttaatgg ttttgaaatg ttcaaccgtt
     9481 gggctatcaa actctttcgc aatattggcg gtagggttaa acggtatcat ttcacggtgt
     9541 acggcaaaca tcataatttc attatgtttt tgaattgccc gttttaactt ctctagtttg
     9601 ccctcgtctt ggtattgctt gaatgccttg attgccattg gtgcggttat ttgtgtgata
     9661 ggcattcttc caaagtgcgg caagaggtta tttttaatta aggcgattac atctttttgg
     9721 tagttgtctg aaaaattctt cttggtcttg cggtgttcca gccacgccca cgctacattt
     9781 tcataagtgt tgctgatttc gttggccttt gcctgttcct gttgttggcg gtgggtttga
     9841 gggtcgatat tttgagccaa taatgcccta tattcttctc taatttctct cgcttgtgct
     9901 aaagaaatat cagggtaagc cccaatgctt aaatcattcc gcttttttgt gaacggtctt
     9961 tcatacctaa accgccacaa tttagaattt gaggtaataa caagtagtaa gccgttaccg
    10021 tctcttaatg ggctgtcttc cggtttcgct tttcttattt gggtatcgtt taatggtgtg
    10081 atttttctag ccatagtaaa cctttaggag tataaagcct aaatcttagg agtacgaatt
    10141 tttgggggta tttcggcgta ctcctaaata tactcctaaa atcttcggat ttgattgtat
    10201 cgtataggta cgcaacggac aataaaaaag ccttgaaaca ttgattttca aggcttttta
    10261 ggtatcggtt gaaccgtata ggattataat ttggtggagc tggggggatt tgaacccccg
    10321 tccgaaattt ctctaccttc agtactacat gtttagtcta gtctttaatt tcgcttattc
    10381 acagcggaca gacacgcaat gaataaacta gctttattta atttagtgtt tcgatcctaa
    10441 agcggcggcg tccacacgat ctcgttttgg gtgacttatc tttgccctcg tcttacgagc
    10501 ggaagctgag gagataaggc tttaaagcag gttattaagc tgctaaagcg tattgttcgt
    10561 cgtttgcgac tattattttg cggtttgttt acgaggccta ccgcacctcg acatgcacct
    10621 tgggcttcgc caatcccgtc gaatccaaaa tcagccccaa aagtagcggt attctaaagg
    10681 aaagcggtcg aatttgcaaa aagttttgca agtggcggaa cttagcggta ttgaatagct
    10741 cgaaataaaa tcatacaaat cccacaccag atagatttaa cgatgttata atgtaaacct
    10801 tgctgagagt gaagagaaat agaatgaaaa aatttaacga gaacgagatt gaagatgctg
    10861 aaattataga tgccgagccg attgatgttg atgagataga cgaagaagaa acatcggtag
    10921 aagcaatgca tccggctttg gtttccggct caatgcctgt gccgcagggc aatttggata
    10981 gctacatccg aatggcaaat cagtatccga ttctcaccgc cgagcaagaa aaagaactgg
    11041 cggagcgtta ttattatgat gaagacgttg aggcggcaaa acagctgatc ctttcccata
    11101 tgcggtttgt gatccatatt gctcgtggct atttgggcta tggtttaccg ctggcagatc
    11161 tgatccaaga gggtaatatc ggcttgatga aagcggtaaa acggtttgac ccgaatgtcg
    11221 gcgtgcggtt ggtttctttt gcggttcatt gggtgaaagc ggaaattcac gaatatgtgc
    11281 tgaaaaactg gcgaattgtg aaagtggcaa ccaccaaagc tcaacgtaaa ttattcttta
    11341 atttacgcaa aaataaaaac cgcttggcgt ggtttaatga agaagagatc aaaaaagttg
    11401 ccgatgattt aggggtttca gtggaagaag tacgagaaat ggaatctcga atgaccggac
    11461 aagatttagg ttttgatctg cctgccggtg atgacgatga agacagctac gctccttcta
    11521 tgtatattga agatagcagc tccaatttcg ccgatgactt ggaagacgaa caacataatg
    11581 ggcaggcaac cgctcaactt gcctatgcgt tagccaccct tgatgaacgt agccaagaca
    11641 tcatcaaaac ccgctggtta gatgacaata aagccacact gcaagattta gccgataaat
    11701 ataacatctc ggcagagcgg gtaagacagc ttgaaaatgc cgcattgaag aaaatcaagg
    11761 aagcgatttc attagacggc tagaaatgcc tacaagcggt gattttttta ctcgctacgc
    11821 tcgcacttcg tgccgtcggc agagccaacg ttcaaacgca agcgtttgtg caaaatttta
    11881 cgcaaaaagc accgcttgta ttttgactaa aaatgaggat actatgatta acattaccga
    11941 taaacaaatt gacccaactt tctaccagcg agcagacggc tttattaacg ttgccaacgc
    12001 tcatttaaaa aacattgccc caaaccaagt cagcaatgcg atgttgtttg gttgtgccag
    12061 atttaacgcc tatgttgcgg caagcaaggc ggaatataaa cagcagttgg ccgattccag
    12121 agaagaagtt attcaatatt ttgtggagca atacaaagaa atgctcactg caaatttaga
    12181 tgaatatatc caaaacttcg agcgatatat tgaagggaaa aaggcggatt aaccgccttt
    12241 gttttgtggt caaacttgtt ttacaaaatc acttaaaact tgattaattc tactttgcca
    12301 acctttacct gaagctctaa aggcttcaag aacgctttta tcaagacgta acgaaaccaa
    12361 ttctttcttt gaaccagctg gtctgccacg ttttttcatt gcaattgaaa actctgatgg
    12421 cgtaaccggg cgttcatcgt catcttttcc gtcccaaata aaatcttggc ttgccggaat
    12481 agcttgaata gccataagta gctgtttttt ctctaaattt ttattattca aagtattgtt
    12541 gtaagtattc ataatatgcc tctctttctg ctttagatgc tcgccgaaag ctaattactc
    12601 tgatgtaatc ttccctttct gtatatgcaa gtgataatac gagtaaacgt ccaaatgaat
    12661 atgcaaaaga ttgtattcta aattcattgt tacgaataac ttcaacatca aatcgatagg
    12721 gcgatgagag aacttcatct gcatcggcaa aatctaatcc gtgcttggct aaattgattt
    12781 tgcgtttagt ttcgtcccaa gtataaattt tcataattat tgtatataca taaaataaat
    12841 ctaacaagaa ctaaatttaa tttagcaaac agtaatttga aaatcagatt agaaatacat
    12901 tttttcgatg cagatcgcaa aaataaaatg aaatttaact gcttgaagag tctactgagc
    12961 cattttcccc gctaccgtaa aaaaaccatc tgcggtttta aaaatttcac cgaatccttg
    13021 agcctccaaa atttggtcgg agacttcacg aaacgcccct tcaccaccgg ctttttgcaa
    13081 tacccaatct gctttttctt tgatgtaatc gagggcgtta cgggttgcaa tcgcaatgcc
    13141 acacacttca aaagccggta aatctaaggt gtcatcacca atgtaagccg tttgctcagg
    13201 ggtaacaccg gcttgctgca ttagctcaaa gcaggcggag cgtttttcca ttttgcctaa
    13261 caaagcgaga tcaattttca gcacctctaa ccgtttgcgg agcaaagccg tatcgccgcc
    13321 cgagagtact gccactttaa tgccacaact ttgtaacatc ttaacgccta aaccatcgtg
    13381 aacgtggaaa cgtttcatta cttcgccttg gtcggtgtag tacattccgc catcggttag
    13441 cacgccgtcc acatcggtaa tcactaattt aatcttggtg agatctaaca tttttttgcc
    13501 tcaaatatgg tatgattttg ccattatagc ttttttacct ccgtttacca aaggaaccga
    13561 aatgtcgatt gccgagaatt tatcgcaaat ccatcaacaa attcagcaaa tttcccaaca
    13621 acaccaacgt gatgacgtac ggctacttgc cgtctcgaaa accaagccgg tagaagccat
    13681 tcaagaggcg atagagggcg gtcagcgtgc atttggtgag aattatgtgc aggaagcgat
    13741 cgaaaaaatc gaatgttttg caaatcgttc agacttggaa tggcacttta ttggtccgtt
    13801 acaatcgaat aaaaccaagt tagttgcagc tcattttgat tggattcaaa cggtggatag
    13861 gctcaaaatt gccgagcgtt taagcgaaca acgcccgata ggaaaagcac cgcttaatgt
    13921 attgattcaa attaatatca gcgatgaagc ctcaaaatca ggcattgagc cggacgaaat
    13981 gttatcttta gcccaagcga tttctcaatt accgaatttg aaattacgtg gtttaatggc
    14041 aatcccaaaa ccggaaagtg agccggagca acaaaaaatc gctttttgca aaatgcagca
    14101 actttttcac cgcttgcaag cagaatttga gggcattgac accctttcaa tgggaatgtc
    14161 tgacgatatg caagccgcca ttgaatgtgg ttctacaatg gtgagaatag gcacggcgat
    14221 ttttggggcg agggattatc gctaaaattt atcggcataa caaaggaatg aatctggcaa
    14281 gtagtcttaa attgtaaaat ttttgcaaat ttagaccgct tgttttgtag ccaaattctg
    14341 aaaaactctg tataattcga cctccaattt ctagactctc gccggttttg atgggcgaga
    14401 gtttttattt tcactcaata aaaaaagata ttccaatgca aaatgtagat attaataaat
    14461 tgcgtaacat tgcaattatt gctcacgttg accacggtaa aacaacgctg gttgataaac
    14521 ttttacaaca atccggcacc tttggtgaca cccgaggcga cgtggacgag cgtgtgatgg
    14581 actccaacga tttggaaaaa gagcgtggta ttaccattct tgcaaaaaat acggcaatta
    14641 actggaatgg ttatcacatc aatatcgtag ataccccagg gcacgctgac ttcggtggtg
    14701 aggttgagcg tgtactttca atggtagatt cggtgctttt agtggtagat gcctttgacg
    14761 gcccgatgcc acaaacccgt ttcgttaccc aaaaagcctt tgctcacggc ttaaagccaa
    14821 tcgtagttat taacaaagtg gaccgccctg gcgctcgtcc tgactgggtg gttgatcaag
    14881 tgttcgatct cttcgtaaat ttaggtgcaa cagacgagca attagatttc cctatcattt
    14941 acgcttctgc gttaaacggc gtggctggtt tagaacacga agagttggca gaagatatga
    15001 ccccgcttta tgaagcgatt gtgaagcacg ttcagccgcc acaagtggaa ttagaggctc
    15061 cgttccaaat gcaaatctcg caattagact ataacaacta tgtaggcgtt atcggtatcg
    15121 gtcgtatcaa acgtggttcg gtaaaaccta accaagcggt aacggtagta ggcagcgatg
    15181 gcaaaacccg ccaaggtcgt atcggtcaag tattagggca tttaggttta caacgctttg
    15241 aagcaactga agccttcgca ggcgatatcg tggcaattac aggtttaggt gaattaaata
    15301 tttcagatac gatttgtgat attaatgcgg tggaagcgtt acctgcatta agcgtagatg
    15361 agccaacggt aaccatgttc ttctgtgtaa acacctcgcc attctgtggt caagaaggta
    15421 aatttgtaac ttctcgccaa attcttgagc gtttaaacaa agaattagtc cacaacgtag
    15481 cacttcgtgt ggaagaaaca cccaacccag acgaattccg tgtgtcaggt cgtggcgaat
    15541 tacacttatc ggtattaatc gaaaatatgc gtcgtgaagg ttacgagtta gcagtgtctc
    15601 gcccgaaagt aatctaccgt gaagaagacg gcaaaaaaca agagccgttt gagcaagtga
    15661 cgattgatat cgaagagcaa caccaaggtt cagtgatgga agcacttggt atccgtaaag
    15721 gtgaagtgcg tgatatgatt ccggacggca aaggacgcac tcgcttagaa tatgtgattc
    15781 caagccgtgg cttaatcggc ttccgtaacg aatttatgac gatgacctca ggtacaggtt
    15841 tactttactc aacattcagt cattatgatg acgtaaaacc gggcgaaatc ggccagcgta
    15901 aaaacggtgt gttaatttct aacgcaacgg gtaaggcatt agcatacgca ttatttggct
    15961 tacaagagcg tggaaaatta atgatcgacc acggtgttga tgtatatgaa gggcaaatta
    16021 tcgggattca cagccgttca aacgatttaa ccgtaaactg cttacagggt aagaaattaa
    16081 ccaatatgcg tgcatcaggt aaagacgatg ccatcgtttt aaccacaccg gtgcgtttca
    16141 ctctagaaca agcgttagag tttattgacg atgacgaatt agtggaagta acaccacaat
    16201 cagtgcgtat tcgtaaacgt ttattaactg aaaacgaccg gaaacgtgca agccgtacta
    16261 caaccagtac cagcacgcac taactgataa aaaagagcga ctgaggtcgc tcttttggtt
    16321 ttaaattctc cctacaaata taacgccatt accaccgcat tttctttgct accgtttggc
    16381 gtggggtaat agtttttgcg ggtggtaact tcattaaaac cgagtgaatc gtagagtttt
    16441 ctggcagaat ggttggattc tcgcacttcc aaccacaggg tggtgagttt ccgttgttgc
    16501 agttgcaaaa ttaattcgga aagtaaccgc ttgccaatgc ctttgccttg aaaatcagga
    16561 gcaactgcaa tgttaaataa ggttgcttca tctagcacga tatgactaat ggcaaaagcc
    16621 acaattttgt tttgctctac cacttttaaa ttcaggtatt tttcaccctg attatttaat
    16681 aacgtcccct ttgaccacgg cactaaatgg gcttgttgct caatttcaaa taactgctcg
    16741 aaatcttccg cttgaatttg ctcaatcacg ctgttctcca aattgtgccg aaaaagtatc
    16801 aatttgttgc caaagttggc gtttggtcgt agatttggct aaatcttgcc aagactcgtt
    16861 tttccaagcg gtctgattag taaaactttt tgccattttg accgcttgtt cttccgcttg
    16921 aatcagccaa aagatcggcg aatgctcaaa caccaaacgt tgtgattgtt cgccagtcag
    16981 ccattgatat tcgctgtttt ttaactttaa agcacgcaga atatcggcaa agagccggct
    17041 gtgttggtga tcttcctcac acactaccac caattttacc gcattgttta ggcggatttg
    17101 agcatcgcct tttagcactt ggggattggt tagcacccat tgcgaaatac ccatttcctg
    17161 taacagtaaa tcacgacgat tcatttaaaa cctcatcaaa ttttgcaaat agtatcaaaa
    17221 ctccgcttga acagaaactt ttttcaaaaa attcaagatt tctgtactta aattcggtat
    17281 attcacgcta attttttaga taaggtaaga aaatgctctc tttagaaagc gaagtacttg
    17341 aacgccattt ggcgttattt gaaaacaagt cggtgttatt atttggcgat gtgcgagatg
    17401 attttgcccg ccagctgcaa tctcgtgcgg aaaaggttgc ggtattcagt agctattttg
    17461 attacgcacg ccaccatagt gaggttgaat ttggcttaga atgtggtttg agtgccgagt
    17521 tagcggtgtt ttattggacg aagaacaagc aggaatgcca attccaactg ctacaatggc
    17581 tgtcgcaatg ccaagcaggg caagaaatgt tgattatcgg cgaaaaccga gctggtgttc
    17641 gttcggtaga aaaattgctc gaaccgttcg gcagtattgc caaaatcgac tctgcacgcc
    17701 gttgtggttt ataccatttt gagctacaga ccgtgccgac attcgattgc aaaaaattct
    17761 ggaaatccta ccgcttgcaa gacttagatg tgttcgctct accagcggtt tttagctcgg
    17821 cggagctgga taacggcacc aaattattgc tttcaacctt cgacaaagca gacaggctaa
    17881 aaggcaaagt gttagattta ggctgtgggg ctggcgtgat tggggcaacg ctcaaacaac
    17941 aatttccgaa aatcaaactg acgatgagcg atattcacgc aatggcgttg gaatccggca
    18001 gacgtacttt ggcggaaaat cagttagagg gggaagtggt agcaagtgat gtgttctctc
    18061 acattaatga acggtttgat ttaattgtct ccaacccacc attccacgac ggggtcgata
    18121 ccgcctaccg agcggtggag gagttgattt tccaagctaa aaatcaccta accaaaggcg
    18181 gtgagctgcg aattgtcgca aacgcattct tgccttaccc agatttgctc gataaagcct
    18241 tcggcaaaca cgacgtactg gcaaaatcca ccaagtttaa ggtgtattcc gcaagaacat
    18301 aataggcaga acaaacggtt ataaaaaagc cgatatttgc ttaaaaaagt gcttgatatt
    18361 tctgccggct tgacgtaaat tctgttcata ctgttttgga gtaatgcaat gaatttaaac
    18421 tacactttac atcaccacca cactttaacc tgatatcttt cgggcatttg gtgtgtgcgg
    18481 aagataactc ttccgagcaa gtgtagcaaa tcaataaaga tctctcggaa ggcaactttc
    18541 gagagatttt tttatagata aaatttggga ataatatgaa aaacccgatt gaaatttacc
    18601 aaagccaaga cggcaaaacc caagtttccg tgcagtttga taaggaaacg gtgtggctaa
    18661 gtttacagca aatggcagat atttttggac gagacaagtc tgttatttct cggcacttac
    18721 gaaatatcta ccaagaaggt gaactggagc gtgaggcaac tgttgcaaaa aatgcaacag
    18781 ttcaaattga aggtgctaga gaagtcgttc gccaagtgga attttataat ctagatgcga
    18841 ttatttctgt tggctatcgg gtgaattcca aagctggcac tcagtttcgt atctgggcaa
    18901 ccgctcgcct aaaagactat ctggtaaaag gctatgccct taacgaacgc cgtttgcagg
    18961 aacgaggtat cgagtttgag caggtgattg gtttgctcag tcaatacact ggttgcctta
    19021 gccttgttgg tggcagaaag tttgcctgaa caaaaagaac tgatgattaa actgattgaa
    19081 cactttattt tattaaaagc ataacaggaa aaaatatgag tattaatatt tcgccgttag
    19141 cctccaaaaa tctcactgaa tggaaactat tgtggcaaca atatttagat ttttatcaag
    19201 tgaatttagc agatgatatt attcaatcaa cttggcagaa agtttcagag agtgaaaatg
    19261 taaagggatt tggggctttt gttgataaca gaatggttgg ttttgttcat attgtgattc
    19321 acccaaatac ttggaattta actgaatgct gttatttgga agatttattt gttttagctg
    19381 aatatcgcaa ccaaggcata ggaaaagaat taattgaata tatttatcga tatgcacagg
    19441 aaaaaggata taaccgagta tattgggtaa cagataaaaa caatcatcaa gcacaacagc
    19501 tttataataa attagctaat gatagcggta ttattcaata tcgaaaaaat ttctaaacta
    19561 tgtataaatt atacaggaac acaatatgac aatttcacaa ctttcccgta aaaacattca
    19621 agctctcacc ccttaccaat cggcacggcg tttggggggt agtggcgatg tgtggctgaa
    19681 tgccaatgaa tatgcccttt cgccaaactt tgatttaacc gaccgcactt ttaaccgcta
    19741 ccctgaacct caaccgcagg cggtgattga aggttacgcc cgatatgcag gcgttgcacc
    19801 tgaaaacgtg ctggtttccc gtgggggcga tgagagcatt gagctgatta tccgagcctt
    19861 ttgcgaggca aacgacagca ttctctactg cccaccaacc tacggaatgt acgccgtgag
    19921 tgccgacacc tgtggcattg cgaccaaaac tgtgccttta accgccgatt tccagttgga
    19981 tttagcccaa atcaaagcta acctcgaggg cgtgaaagtg gtgtttgtgt gcagcccgaa
    20041 caacccgaca ggcaacttaa tcaagcggtc ggatttgttc gaacttttgc aaatcaccgc
    20101 aggcaaagcg attgtggtgg tggacgaagc ctacatcgaa ttttgccctg aagcgagctt
    20161 ggtaagcgag ctggcgaatt tcccacattt ggcgattatc cgcaccctat ccaaagcctt
    20221 tgccttggcg ggtttgcgtt gtggctttac cttggcaaac gctgagctga tcggcgtgtt
    20281 acaaaaagtg attgccccgt atccgctacc tgtgcctgtt tccgacatcg ccgcccaagc
    20341 cctctcccca caaggcattg agcagatgaa aacccgtgta gcggaagtca tcaccctgcg
    20401 tgccgaattg caaaaaaatc tggaaaactt accgcttgta gaacaagttt ttgacagcga
    20461 agccaactac ctcctattca aatgccaaga cggacaaaaa gtcttcaaag cactttggga
    20521 gcaaggcatt attttgcgtg accaacacaa agcgttagga ttgcaaaatt gcattcggat
    20581 tacggtgggg gcgagagagg agaatttgag ggtggttgag gcgattacag cactgagcca
    20641 atttcagaga tagaatttaa cgagcagtat tttaagagac atttatagcc tagcacggca
    20701 tagccgtact aggttacgca taagtcagtc cctttgggac tgaatacaga gaggcaaagt
    20761 ctctcactaa tgcttaaccc catacgcctt ggcgtgtggg gagagtaatg aataagatac
    20821 aggagaaacc aatgcaaccc acccttttta tcgaccgtga cggcacgtta attgatgagc
    20881 caaaaaccga ttttcaaatc gacagcttgg aaaagctgaa attcgagaaa aacgtgattc
    20941 ctgccctgct caaactcaag ggcaaatacc gctttgtgat ggttacgaac caagacggct
    21001 taggcacgag ttcgttccca caggcagatt tcgacaaacc gcacaatgca atgatggcgt
    21061 tgttcaactc gcaagggatt gaatttgatg atgtgctgat ttgtccacac aagcccgaag
    21121 acggttgcga ttgccgcaaa ccgcacacca aactgctaca aaaatatatc gaccgccaac
    21181 tgttcgaccc agccaacagc tttgtgattg gcgaccgtgc taccgatgtg caactggcgg
    21241 aaaaccttgg cattcgggcg ttgcaatatc accctgaaaa actgaactgg gatttgattg
    21301 ctgaaaaact actgggcgaa gccgtcacca acattggcga gcgaccaaag cgctttgccg
    21361 aagttatccg taaaaccaaa gagaccgaca tcaaagtgca agtgtggctg gacgaaacag
    21421 gcaacaacga aatcagcacc ggcgtgggct ttttcgacca tatgcttgac caaattgcca
    21481 cccacggcgg ttttagaatg aacatcacca ccaaaggcga cttgtggatt gacgaacatc
    21541 acacggtgga agacaccgcc ctcgccctcg gcaccgcatt aaaacaagcg attggcgaca
    21601 aacgcggcat cgcccgtttc ggcttcgtgt tgccgatgga cgaaagccgt gcggaatgtg
    21661 cgatggactt atcaggcaga cctttcatca agttcaaagc ggatttcaaa cgcgacaaag
    21721 tgggcgattt cagcaccgag ctcaccgaac acttcttcca atccatcgcc ttcacgatgc
    21781 tcgccaccct gcacatcaag gcaaaaggcg acaacgacca ccacaaaatc gaaagcctgt
    21841 tcaaagtctt cggcagaaca ctcagacagt gcattcgtat tgaagggaat gaactaccaa
    21901 gcagtaaagg tgtattataa tcaccgtagg ggcgggtttt aacccgcccg aaagtgcggt
    21961 tgaaatttgc aaagtttttg gggattttga ccgcttgtta taaaggatat attgatgatt
    22021 agagaagtta ttgactttat aaagaataat aaatggtatg ttctgttagt tgtattgtta
    22081 ttaggattat atttttatca gtttcacggg ggattatcct cagatagtga aaaatgggat
    22141 cattttggta gctatattgg tggtatattt tctgctgtta ctttattgag tgttttgcat
    22201 ggaatgcagt tggaacgtaa aagatttaag gagcaaaaag aagaatttga aaatgacaaa
    22261 agagtattag aaaagagaag aagaaaagaa gattttgagc gtacattttt tat
//
LOCUS       DANLUT010000019        20986 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLUT010000019 DANLUT010000000
VERSION     DANLUT010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20986
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(122..1471)
                     /locus_tag="PXB38_000657"
     CDS             complement(122..1471)
                     /locus_tag="PXB38_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5353010.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKEKAPFTLG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETSIGLTGFACALIGSWLL"
     gene            1658..2173
                     /locus_tag="PXB38_000658"
     CDS             1658..2173
                     /locus_tag="PXB38_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL5353011.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFDLVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCIKAAEPLI"
     gene            complement(2227..3225)
                     /gene="gntR"
                     /locus_tag="PXB38_000659"
     CDS             complement(2227..3225)
                     /gene="gntR"
                     /locus_tag="PXB38_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HDL5353012.1"
                     /translation="MSKPKRPTLQDIASHLGITKMTVSRFLRDPNTVAKETGERIAQA
                     IELFGYIPNRAPDILSNAKSRAIGVLVPSLTNQVFADVIKGIEQITDQAGYQTMLAHY
                     GYSEQKEEQRIESLLSYNIDGIILSENHHSPRTLKMLEVANIPVIEIMESGECGIQQA
                     VGFDNISAAQAMVETMIHRGCRQVVYFGARMDKRSQLKMQGYEQAMLKHGLSPHSITT
                     AEHSSFTLGASQLKQALEQIPQLDGIFCTNDDLAIGALFECQRLGINVPQQIKIAGFH
                     GHDVGQSLTPQLASVMTPRLEMGRVAAQELLDRIHGVPQQSPIINLGYHIHLGESV"
     gene            complement(3318..4478)
                     /locus_tag="PXB38_000660"
     CDS             complement(3318..4478)
                     /locus_tag="PXB38_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL5353013.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLLIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNSDYYPNLPYVATD
                     NYALIEAAFLHLKQKGIDQFAFYGYPAETEKHWAIERQNAFIQLMEKYEHQPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPPHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAAKLLYRKLNNLPVSLKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKVSRSNLEQRFKEEMNKTIHQVI
                     HEEKLARAKYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4601..4987)
                     /gene="rplQ"
                     /locus_tag="PXB38_000661"
     CDS             complement(4601..4987)
                     /gene="rplQ"
                     /locus_tag="PXB38_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL5353014.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPDVATEAAAE"
     gene            complement(5023..6012)
                     /gene="rpoA"
                     /locus_tag="PXB38_000662"
     CDS             complement(5023..6012)
                     /gene="rpoA"
                     /locus_tag="PXB38_000662"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL5353015.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(6043..6669)
                     /gene="rpsD"
                     /locus_tag="PXB38_000663"
     CDS             complement(6043..6669)
                     /gene="rpsD"
                     /locus_tag="PXB38_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL5353016.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6698..7087)
                     /gene="rpsK"
                     /locus_tag="PXB38_000664"
     CDS             complement(6698..7087)
                     /gene="rpsK"
                     /locus_tag="PXB38_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL5353017.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7104..7460)
                     /gene="rpsM"
                     /locus_tag="PXB38_000665"
     CDS             complement(7104..7460)
                     /gene="rpsM"
                     /locus_tag="PXB38_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL5353018.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7598..7711)
                     /gene="rpmJ"
                     /locus_tag="PXB38_000666"
     CDS             complement(7598..7711)
                     /gene="rpmJ"
                     /locus_tag="PXB38_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL5353019.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7736..9055)
                     /gene="secY"
                     /locus_tag="PXB38_000667"
     CDS             complement(7736..9055)
                     /gene="secY"
                     /locus_tag="PXB38_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL5353020.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFAGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(9058..9492)
                     /gene="rplO"
                     /locus_tag="PXB38_000668"
     CDS             complement(9058..9492)
                     /gene="rplO"
                     /locus_tag="PXB38_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL5353021.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9497..9673)
                     /gene="rpmD"
                     /locus_tag="PXB38_000669"
     CDS             complement(9497..9673)
                     /gene="rpmD"
                     /locus_tag="PXB38_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL5353022.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9680..10180)
                     /gene="rpsE"
                     /locus_tag="PXB38_000670"
     CDS             complement(9680..10180)
                     /gene="rpsE"
                     /locus_tag="PXB38_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL5353023.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10195..10548)
                     /gene="rplR"
                     /locus_tag="PXB38_000671"
     CDS             complement(10195..10548)
                     /gene="rplR"
                     /locus_tag="PXB38_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL5353024.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10563..11096)
                     /gene="rplF"
                     /locus_tag="PXB38_000672"
     CDS             complement(10563..11096)
                     /gene="rplF"
                     /locus_tag="PXB38_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL5353025.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11113..11505)
                     /gene="rpsH"
                     /locus_tag="PXB38_000673"
     CDS             complement(11113..11505)
                     /gene="rpsH"
                     /locus_tag="PXB38_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL5353026.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11542..11847)
                     /gene="rpsN"
                     /locus_tag="PXB38_000674"
     CDS             complement(11542..11847)
                     /gene="rpsN"
                     /locus_tag="PXB38_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL5353027.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPVRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11859..12398)
                     /gene="rplE"
                     /locus_tag="PXB38_000675"
     CDS             complement(11859..12398)
                     /gene="rplE"
                     /locus_tag="PXB38_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL5353028.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12416..12727)
                     /gene="rplX"
                     /locus_tag="PXB38_000676"
     CDS             complement(12416..12727)
                     /gene="rplX"
                     /locus_tag="PXB38_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL5353029.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNLETNKADRVGFRFEDGKKVRFFKSSEKT
                     I"
     gene            complement(12738..13109)
                     /gene="rplN"
                     /locus_tag="PXB38_000677"
     CDS             complement(12738..13109)
                     /gene="rplN"
                     /locus_tag="PXB38_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL5353030.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(13332..15167)
                     /gene="glmS"
                     /locus_tag="PXB38_000678"
     CDS             complement(13332..15167)
                     /gene="glmS"
                     /locus_tag="PXB38_000678"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL5353031.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVQALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKVEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPIAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(15215..15976)
                     /locus_tag="PXB38_000679"
     CDS             complement(15215..15976)
                     /locus_tag="PXB38_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL5353032.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLAAELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELEWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(16133..16333)
                     /locus_tag="PXB38_000680"
     CDS             complement(16133..16333)
                     /locus_tag="PXB38_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5353033.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            16558..17592
                     /locus_tag="PXB38_000681"
     CDS             16558..17592
                     /locus_tag="PXB38_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5353034.1"
                     /translation="MKLKKLSLALSTLLLGSAFSNSVLAEGRLTVYCSAANELCEQEV
                     QAFGKKYDVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRLKKLGIEKVPSTWEELLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLWGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETTIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAEASPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            17660..19696
                     /locus_tag="PXB38_000682"
     CDS             17660..19696
                     /locus_tag="PXB38_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5353035.1"
                     /translation="MQNFSFSRPLVWVFIGLLGFLLLPSKALDYGLFDSTSDELLAAM
                     GWSSINITWAWFLPLLVFLLPNSTACKTRAKLELVGLGVLFAFIFLSAIVLKISLGYA
                     VLPLIIAIMGLATQNLATLKVMQGDRFIIGSLLSIILLIFFFIVYPTIAIFVSMFYNG
                     SEFVPSQVLTILQQPYVVRVIGNSLSVAGTVGVLSTLFGLAFALYTTRIAKRSAFIGR
                     IFSILPIVTPPFVVGLGVTLMLGRSGYVTEFLVDYFGFANNWLYGFTGIVIAHTLALT
                     PMSFMILEGALKSIHPSVEEAAYTLRSNRYQAFFNIIFPLLKPALANSFLVVAIQSLA
                     DFSTPLVLGGSFDVIATQIYFYIAGSQLDYASASTLGAILLVFSLAIFVIQYLWIGNR
                     SYVTVSGKSYRGDVQDLPSGMKWLIICTLLFWGTFNLVLYGSIFYGSFTVNWGVDYTL
                     TLDNYIKLFGQGFSDGGFPSLIQTVIFAAAAAPITALFGLLIAYVTVRRDFKGKKTLE
                     FLTLLCFAVPGTVAGVSYILAFNDAPIYLTGTGMIIILSMVMRNMPVGMRAAIAGLRQ
                     LDKSLDEASLSLKAGSFKTMLFVVLPLLKPALLSALVTSFVRAMTTVSAIVFLVTADT
                     RVATSYILNRVEDGEYGIAIAYGSILIVVMMAIILIFDWIVGDTRIARSKAKKM"
     gene            19794..20843
                     /gene="fbpC"
                     /locus_tag="PXB38_000683"
     CDS             19794..20843
                     /gene="fbpC"
                     /locus_tag="PXB38_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL5353036.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGKDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEKRLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLSNAEQFELPDGECLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         5929 a         4722 c         4153 g         6182 t
ORIGIN      
        1 tcagtttata aatgaagata tattaaataa accctaacat tctataataa gaaaaagcgg
       61 tcgattctct gccaaatttt gcaaatttta gaagaaaaca gaccgcttgt cagggttgga
      121 attagagtaa ccagctgcca atcaatgcac aggcaaaacc ggttaaaccg atggaggttt
      181 caagcattgt ccaggttttg agggtggttt tttcgtccat ttcgaggaaa cggctcatca
      241 gccagaaacc ggagtcattg acgtgggaaa gcacggtagc accagaggca atggcaatca
      301 cgataaagca gaggtcgaac tggcttaaat cggtggctgc tgcgacagtt ggtgcaatta
      361 acgccgctgt ggtggttaag gcaaccgttg ccgagccttg tgcaacacgg aaaacggtgg
      421 caataataaa ggcagccacc acaatcggca ttccggtgtc tttcatcatt tccgataaca
      481 catcgccaat cccgctggca cgcaacacgc caccaaacat tccgccagca ccggtcacta
      541 agacaatcga gcagattggg ccaagggcat tgttacagat tttttcgatt tggtcgaaac
      601 tgcgattatc ccgcaacagc ataatcgcca caattaaggt aatcagtaaa gcaacagggg
      661 ttttgccgat taagcgaagg ctctgcaccc acatttcact gccatcaatc actttggcaa
      721 ccgagagggt attcaagccg gtatcaaaca aaatcaggat aatcggcagc accaacaccg
      781 tgagtacctt gccgaaactt ggcggatttt gcactgccat ttcgtttgcc gataagccgt
      841 ttaaaaaggc tttcggtaga tcaacgtgaa tgcgtttgct gataaattgg ctgaacagat
      901 aagtgccgat ataccacgtt gggattgcac aaaccaagcc caccaagact aacagcccca
      961 tatttacacc aagcagatcg ccggaggcca ccgggccggg gtgtggcggt agaaaagcgt
     1021 gcattaccgc aaacgcaccg gcagacggaa acgcataacg caataccgag ccaccgaact
     1081 gtttcgccac actaaaaata atcggcaaca tcaccaccaa gccggcatca aagaaaatag
     1141 ggaagccgaa taacagcgag gcaacaccca atgtaaaggg tgctttctct ttaccgaatt
     1201 tattgataag cgtatcggca agcacttttg caccaccggt gatttcaagc aagcgaccaa
     1261 tcatcgcccc aagcccgacc agtaacgcca ctgaagcaag cgtgctgcca aagccgttta
     1321 acaaagttgg caggatttta tccaccggaa taccggcagc taatgcagtg agcaggctca
     1381 caataatcaa tgccacaaaa gcgtggactt taaatttcat aatcagcacc agcaataaaa
     1441 tgatggcagc aaacataatg aacagtaaca taggatctcc taaggttgaa ttgttatcgg
     1501 taacataacc caaaagcagt ttagagtaaa cggttgcagg gcttttattt taaaaatgtg
     1561 atctacttca agttttctgg aaatagcaga tgatttttca gcataacctg ttacattaac
     1621 ggctaagtta acgttaccag taacacaagg aaattcaatg gcaaacggca aagcatttat
     1681 tttgatgggc gtgtccagca ccggcaaaac cagcgtggga acggcagtcg cacagcggtt
     1741 gggaataaaa ttgattgatg gggacgactt acaccctcgt gccaatatac tgaaaatggc
     1801 aagtggcacg ccactcaatg atgcagatcg cacaccgtgg ttggagcgga ttaacgatgc
     1861 agtgttcagt tttgaacaaa aaagcgaaaa agggattatc gtctgctcag cattgaagaa
     1921 aaagtaccga gaccagatcc gacaaggcaa tgccgatgtg acatttctat tccttcacgg
     1981 ctcatttgat ctggtgctgg ctcgaatgca acaacgtaaa gggcatttta tgaaaccgga
     2041 aatgctccaa agtcagttca atacactgga aattccacaa gcagacgagc cagatgtgat
     2101 ttttattgat attgacggca gttttgatga ggttgtagag cgttgcataa aggctgctga
     2161 gccgttgatt taatcacaag ctgttgattt tgcagatttt tttgcaaatt taaccgcttg
     2221 cctttcctac acactttccc ccaaatgaat gtgatagccc aagttaatta ttgggctttg
     2281 ttgcggtacg ccgtgaatgc ggtcgaggag ttcttgggcg gcaactctgc ccatttcaag
     2341 gcggggcgtc attacgctgg caagctgtgg cgtgagggat tgcccaacat cgtggccgtg
     2401 aaagcctgcg attttaatct gctgcggcac attaatgcct aaccgttgac actcaaataa
     2461 tgcaccgatt gccaagtcgt cattagtgca aaaaatgccg tccagttgtg gaatttgctc
     2521 caaagcttgt tttagctggc ttgcgccaag cgtgaaagaa gaatgctctg cagtagtaat
     2581 gctgtgtggg cttaagccgt gtttgagcat tgcctgttcg tagccctgca ttttcagctg
     2641 agagcgttta tccattctcg ccccgaaata caccacctgt cggcagcctc gatgaatcat
     2701 tgtttctacc atcgcttgag ccgcagaaat attgtcaaat ccaaccgctt gctgaatccc
     2761 acattcacca ctttccatta tctctattac cggaatattc gccacctcca gcattttcaa
     2821 ggtgcggggc gagtggtgat tttccgataa aataatgccg tcaatattgt acgaaagcag
     2881 cgactcaatc cgctgttctt ccttctgctc gctgtaacca tagtgggcaa gcatagtttg
     2941 gtagccggct tggtcggtaa tctgctcaat gcctttaatc acatcagcaa acacttggtt
     3001 ggtaagcgag ggaaccagca cgccaatcgc tcgacttttg gcattagaga gaatatccgg
     3061 tgcacggttt gggatatagc caaacagctc aatcgcttgt gcaatccgtt cgccggtttc
     3121 tttggcaacc gtgtttggat ctcgcaaaaa acggctaacc gtcattttag tgatgccgag
     3181 atgagaggcg atgtcttgca aagttgggcg tttcggttta ctcattggaa tagataacga
     3241 aaaaatttaa ttttgctgat tataactgaa gataaggcaa taattgcaaa atattcggtg
     3301 aaattaaccg cttgttacta ctcttgcctg aactctttcg gcgttttgcc aaattctttt
     3361 ttaaacacgg catagaaata ttgtaaagag ggataaccac acacattggc aatttcttgg
     3421 gtcgaaatct cggtaaattt gagcatatat tttgctcttg ctaatttttc ttcgtgaatc
     3481 acttggtgaa tcgtcttatt catttcctct ttaaaacgtt gttcgagatt agagcgggaa
     3541 actttgagat gatccagcac ttgctctact ttaatacctt gacatgctcg atgacgaata
     3601 aagtgcatag cttgaattac cattgggtct tgtaaagatc ggtaatcggt agaacggcgc
     3661 tcctcaactt ttaccggtgg aattaaaatc ggcttaagag aaacgggtaa attatttaat
     3721 ttacgataca gtaatttcgc ggcgtgataa ccaatttgcg atgttccctg tgtaactgaa
     3781 gaaagcgaaa cccgagagag gtattgaatc agctcttcat tatcaatgcc gatcacgcaa
     3841 agttgttcag gtacagcaat ttttaaatgc tcgcaggttt gaagtagatg tcttgccctt
     3901 gcatcagtta ccgcaataat accagtatga ggtggtaaag tttgcaacca ctcgcctaat
     3961 ttagcttgta attccaccca gttgtctgaa tggaattgat cgccaatata gcaattcggc
     4021 tgatgttcgt atttttccat caactgaata aaggcatttt ggcgttctat cgcccagtgt
     4081 ttttccgttt ctgccggata gccgtaaaat gcaaattgat ctataccttt ctgttttaga
     4141 tgcaaaaatg cagcctcaat taaggcgtaa ttatcggtgg caacataagg aagattaggg
     4201 taatagtcgg agttttggta agaaccacct accgccacaa tcgggacatc aatatcttta
     4261 agcaactcga ccgtttctaa atcgtcaaaa tcggcaataa taccgtcaat caacaggctt
     4321 tcgatactgt ttttatgata gacaaaatcg tcttccacaa aaatatccca agtacattgt
     4381 gaggcttgaa taaactgccc gatgccttgc attactcccc tgtcataaat tttgttagca
     4441 ttaaaaagta aggcaatttt ataagattgt tctatcatta cttcctccag tacccacttt
     4501 caaaagtaac tataaaataa aattattttt tgatcaaagc gaataaaaga ataaaacccc
     4561 agtacttcta ctggggtttt aagctcaatt ttgattaaga ttattccgca gctgcttcag
     4621 ttgcaacatc tgggcgatcc actaactcaa tgtaagccat tggagcatta tcacctgcac
     4681 ggaaaccaca ttttaagatg cgagtgtaac cacccgcacg ttgtgcaaaa cgtggaccta
     4741 attcattgaa taatttagca actgtatcaa cgttgcgtgt acgggcaaaa gctaaacggc
     4801 gatttgcaac gctgtctgct ttagctaaag taattaacgg ctcaactaca cggcgtaact
     4861 ctttcgcttt tggtaaagtt gtcttgatga tttcgtgttc aacaagcgca cttgccatat
     4921 tacggaacat cgcttggcga tggctgctgt tacggtttaa ttgacgtcca ctcttacgat
     4981 ggcgcataac ctattccttc ttagaaaatc tataccgaaa aactagtctt ctgcaatact
     5041 tgcaggtggc cagttttcaa ggcgcatacc gagtgataaa ccacgagaag caagaacatc
     5101 cttaatctct gtaagagatt ttttacccaa gttcggggtt ttaagaagtt caacttctgt
     5161 acgttgtact aaatcaccga tatagtgaat tgtctctgct ttcaaacagt tagcagaacg
     5221 aactgtcagc tctaggtcat ctactggacg aagaagaata ggatcaaatt ccggtttttc
     5281 ttctttcact tcaggttgac gaacatcacg caaatcaacg aatgcagcaa gttgttctgc
     5341 taaaatcgtt gcagcacgac ggatagcttc ttcaggatct aacgttccgt tagtttccat
     5401 ctcaataacg agtttatcta agtctgtacg ttgttcaaca cgagcagctt cgacattgta
     5461 agcaatgcga tctacaggtg aaaaacgtgc atctactaat aaacgaccga taggacggtc
     5521 atcgttttga gtatgaagac gtgctgatgc aggaacataa cctcgaccac gttgaacacg
     5581 aatgcgcata ttaattgacg cattcttatc tgttaaatga cagattacgt gatcaggatt
     5641 cacaatttct acatcgccat cgtgtgtgat gtcggctgca gttacagggc caattccaga
     5701 tttatttagt gtcaaaataa tatcatcttt attttgcact tttaccgcta gacctttaag
     5761 gtttaataat acctcaagaa tatcttcctg aacgccttct ttgctgctgt actcatgtag
     5821 tacaccatca atttcaactt cagtaactgc acaacccggc atagatgaaa gtaaaatgcg
     5881 gcgaagtgcg ttacctaatg tatggccaaa accacgttct aacggctcta atgtcacttt
     5941 agcatgagtt gaactaactt gttcaatatt tactaagtgc ggctttaaaa attctgtcac
     6001 agaaccctgc attttttcct ctctttgcgg ttaagctaac tattatttag agtaaagctc
     6061 aacgatcaga tgttcattaa tatctgctga tagatcagaa cgctctggac gacgtttaaa
     6121 tacgccttcc attttagttg catcaacttc taaccaagtt ggtttttcac gttgagttgc
     6181 taattctaat gatgctttaa tacgtgcttg ttttttcgat ttttcacgaa cagcaacaac
     6241 atcatcaaca gaaacttgga atgaaggaat gtttactaca cgaccgttta ctacgattga
     6301 tttatggcta acaagctgac gtgcttctgc acgtgttgct gcaaaaccca tacgataaac
     6361 tacgttatct aaacgacctt ccaataatac tagtaagttt tcaccggtat taccttttaa
     6421 gcggttcgct tctgtataat aattacggaa ttgacgctct aagataccat aaatacggcg
     6481 aactttttgt ttttcacgta actgactacc atagtcagat aaacgtggct tgcgagcacc
     6541 atgttgacca ggcgctacat caagtctatt tctacatttt gattcaatcg cacgaacgcc
     6601 tgattttaag aataaatcag taccttcacg acggcttagc ttgagcttag gacccaaata
     6661 tcttgccatt ttctttctcc aattctttta acgtcaatta aacacgacgt tttttcggtg
     6721 gacgacaacc gttatgtgga atcggagtca catcagtaat attcgtgata cggaaacctg
     6781 ctgcatttaa tgcacggatt gttgactcac gacctggacc cggtccttta accataactt
     6841 ccaaattctt taaaccaaac tctttaacca tttctgcaca acgctctgca gcaacttgag
     6901 cagcgaatgg agtcgattta cgagaaccac ggaaacctga accacctgca gttgcccaag
     6961 ctagagcatt accttggcgg tcagtaatag taacgattgt gttattgaaa gatgcgtgga
     7021 tatgagctac gccatctgca atctgttttt ttacgcgctt acgtgcgcga actggtgttt
     7081 tagccattat ttatctactc cgactatttt ttgatcggtt tgcgtggacc tttacgggta
     7141 cgcgcattag tcttagtacg ttgaccacgt accggtaaac tacgacgatg acgtaaacca
     7201 cggtagcaac ctaagtctaa aagacgtttg atgcttaaag ttacttcacg acgtaaatcc
     7261 ccttcgacag taaatttacc aacttcttca cgcagttttt caatctgctc ttcagacaat
     7321 tctctgatct ttacatcttc ggcaataccc gttgcagcac agatggcttt tgcacgagtt
     7381 ttaccgatac cgtaaattgc agttaatgcg attacagtgt gtttttgatc aggaatgtta
     7441 atgcctgcaa tacgggccac tatgcactcc tattatttaa gtttattgat atactgatct
     7501 tgaaaagccc gtttcaggat actcaaacag tatatcagga cgaatgagct gagcagtata
     7561 actgctcagc gggttctttg caagaaatat gcgtaaatta accttgacgt tgtttgtgtt
     7621 taggatcgct acaaattaca cgaaccacac cttcacgttt gattacttta caattacggc
     7681 acattctttt tactgaagca cgaactttca ttgcttatcc tttattaacg gcctattaat
     7741 ttagaccttt taagttagct ttcttcaaca cagaatcata ttgttgagac attaaatgac
     7801 tctgaacctg tgcgatgaaa tccataataa caaccactac aatcaataat gatgtaccac
     7861 ctaattggaa tggcaccttc cataacgacg taatgatgta aggaaccaaa caaacaaaag
     7921 caatatataa cgcaccaatt aaggttaaac gtgtcattac tttatcgata taacgagatg
     7981 tttgttcgcc tggtcggtaa cctggtacaa acgcacctga tttcttaaga ttatccgctg
     8041 tatcacgagg attatactgc attcctgtat aaaagaaagc aaagaaaatc actgccattg
     8101 tgaataatac aacatacagt ggttgacctg gctgtaatag ttgtgaaagg ttaaataacc
     8161 actcaaatcc ttcgctttga ccaaaccatt gagtaatact tgccgggaat aaaataatac
     8221 ttgaagcaaa aattgccggt attacccctg ccatattcac ttttaatggt aagtgagaag
     8281 ttcttgcagg cgccatcatt cgaccttgtt ggcgacttgc atagtttaca actattcttc
     8341 tttgtccacg ttcaacaaaa acaacaaaat aagttactgc aaatgcaatt attgcaacta
     8401 gtagtaagac gataaatgat aactcacctt gacgggcttg ttcaattgtc tgccctatcg
     8461 ttgctggaag atctgcaaca atacctgcaa aaataatcaa tgagataccg tttccgatac
     8521 cacgctcagt gatttgttcg cctagccaca ttaggaacat tgttcccgtc actaagctta
     8581 ctacagaagt tacatagaat aatatacttg gattaggaac taatccatgt accatattcg
     8641 gtagggctag tgaaatacca atagattgaa taaatgctaa taacagtgtg ccatagcgtg
     8701 tatatttact gattttccga cgacctgctt caccttcttt ctttaattca gctagaggtg
     8761 ggtgaatcgc tgtcaataat tggataataa ttgacgctga aatataaggc ataataccta
     8821 gtgcaaatat agatgcacgg cttaaagcac caccagagaa catattaaac atatcaatga
     8881 tggtgccttg ctgttgtcga attaattcgg ataatacaga agcatcaatg ccaggaacag
     8941 gtataaaaga accgatacgg aaaacgatta acgcacctaa aacaaacaat agtcttgatt
     9001 taagctcgcc agtccctttt tgtgtactac cttggtaccc tggttgcttt gccatcttta
     9061 ttcctcgata gaaccgccag cagcttcaat agcagcttta gcgcctttag ttacacgtaa
     9121 gcctttaaca actactgctc tttcaatttt gcctgctaaa attactttag cagataaaat
     9181 atctttagta atgatgtttg ctgcttttaa tgtctctaaa gttacttcgt tgccatctac
     9241 tttagctaag tcgtttaaac gaatttcagc cacatggaat gattttaatg aagtaaaacc
     9301 aaattttggc aaacgacgat ataaaggcat ttgaccaccc tcgaaaccac gacgaacacc
     9361 gccgcctgta cgagattttt gacctttatg accgcgccca ccagttttac ctaaaccaga
     9421 accaatacca cgacctagac gttttgcact gtgcttagca ccttcagctg gagaaagaga
     9481 atttaaacgc attctattac tcctctactt taaccatata agacacttga ttgatcatac
     9541 cacgcactgc tggtgtatct tcaagttcta cagtatgacg aatatgacga agacctaagc
     9601 cttttaacgt tgctttatgt ttcggtaaac gagcgataga gctacgagtt tgagttactt
     9661 taatttttgc catatccaat taccccaaaa tttcttcaac tgttttgcca cgttttgcag
     9721 caaccatttc aggtgatttc atgttctcaa gtgcatcgat tgttgcacga acaacgttaa
     9781 ttgggttagt tgaaccatac gctttagaaa gaacgttacg aacacccgca acttctaata
     9841 ctgcacgcat tgcaccacca gcgatgatac ctgtaccttc acttgctggt tgcataaata
     9901 cgcgtgaacc tgtatgtgaa cctttaactg gatgttgtaa tgtaccttca tttaaagcta
     9961 cattaatcat attgcgacga gctttttcca tcgctttttg gattgctgct ggaacttcac
    10021 gtgctttacc gtaaccaaaa cctacacgac cgttaccatc gcccactact gttaaagcag
    10081 tgaaactcat aatacgacca ccttttacgg tttttgaaac acggttaacc gcgattagct
    10141 tttcctgcag ttcaccagct tgtttttcga tgtttgacat ctcaaattcc tctattagaa
    10201 ctgtagacca gcttcacgag cagcatctgc taatgattgc acacgaccgt ggtatttaaa
    10261 accagaacgg tcaaaagcaa ccgctttaat acctttggca attgcacgct cagcaacgat
    10321 tttacccact actgctgcgg cttctttatt gccggtatat ttaacttgct ctttaattac
    10381 tttttcaaca gttgaagctg ctgctagtac ttctgagcca ttaggtgcaa tcacctgcgc
    10441 atagatatgg cgaggtgtgc gatgcacaac taaacgtgtt gcaccttgct ctctcattaa
    10501 atgacgtgca cggcttgcac gacggatacg agctactttc ttatccatag tgttacctta
    10561 ctttactttt tcttcgcttc ttttgtacgc actacttcat cagagtaacg tacaccttta
    10621 cctttataag gttcaggttt gcgatatgca cgaatatctg ctgccacttg accaattaac
    10681 tgtttgtcag cacttttcag aataatttct gtttgtgatg gacattcacc agttacgcct
    10741 gctggcaacg tgtgttctac tgggtgagag aaacctaaac ttaaagcaac agcattgcct
    10801 ttcatttgtg ctctataacc aacacccact aattgcaatt tcttagtaaa gccttcagta
    10861 accccgatta ccatattatt tactagtgca cgagcagtac ctgcttgagc atctgcatta
    10921 gcgatacctt cacgtggagc gaaagttaat gcatctgctt cttgttttac ttcaactgca
    10981 ttgtgaattt cacgagataa ctcgccgttt ttacctttaa ctgttaatag ctgaccgtta
    11041 agttttacct caacaccggc aggaatatta acaggtgctt ttgcaacacg agacattttt
    11101 cctacctctc tattatgcta cgtaacagat aatttcaccg ccgaggcccg cttgacgcgc
    11161 agcacggtcg gtcattacac ctttagatgt agaaacaact gcgataccta aaccacccat
    11221 tacttttggt aattcgtctt tacgtttata aatacgcaga cccggacggc tcacacgttg
    11281 gatactttct acaaccggtt tgttttggaa atattttaaa gtaatttcca gttcaggttt
    11341 aacaccttca acaactttaa cgctttcgat ataaccttct tcagctaaaa catttgcaat
    11401 agcaactttt aacttagatg aaggcatact gattgcaact ttgttcgcag cttgaccgtt
    11461 acgaatacgg gtcagcatat ctgcgattgg atcttgcatg ctcatgtatt tactcccatg
    11521 attccaaatt aaaagaggtt attaccagct tgccttctta agacccggaa tttcaccgcg
    11581 catagcagct tcacgaacct taatacggct taaaccaaac ttacgaagta cgccatgtgg
    11641 acgaccagtt tggcggcaac gattacgctg acggactggg ctagaatcac gaggaagtgt
    11701 ttgtaatttt aacactgctg cccaacggtc ttcatcagat gcattcacat cagagatgat
    11761 tttctttaat tcttcacgtt ttgcgtagaa tttatcagct aatttagcac gttttacatc
    11821 gcgtgcgatc attgattgtt ttgccacgat aacctacctt atttacggaa tgggaaattg
    11881 aaagcagcta ataaagcttg accttcttca tcagttttcg ctgaggtggt gatagtaata
    11941 tctaaaccac gaacacgatc tactttatcg tagtcgattt cagggaaaat gatttgttca
    12001 cgaacaccca tactgtaatt accacgacca tcgaatgact tagcgtttaa accgcggaag
    12061 tcacgaatac gtggaacagc gatagtaatc aatctttcaa agaattccca catacgttca
    12121 ccacgtaggg ttactttgca gccgattgga tacccttgac ggattttaaa gcctgcaaca
    12181 gatttgcgag ctttagttac taaaggtttt tgaccgctga ttgctgctaa atccgctact
    12241 gcgttatcta acagtttttt gtcggtcaat gcttcaccca cacccatgtt aagggtaatc
    12301 ttttcgattc gtgggacttg catgacagat gagtagttga attttgcttt taattcatta
    12361 actactgtat ctctgtagta atcatgcagt ttcgccatca cattactcca gttaattaaa
    12421 ttgttttctc gctagatttg aagaaacgca cttttttgcc atcttcgaat ctaaatccta
    12481 cacggtcagc tttgttggtt tcaaggttga agatcgcaac gtttgaaaca tcgattgcag
    12541 cttctttctt cactaaacca ccagctttgc ctaatgcagg aactggtttt tcgtgtttag
    12601 tgatgatgtt gataccctca acaaaaactt taccatttgg taacacttta gttaccttac
    12661 cacgtttgcc cttatcttta ccggtaagaa caattacttc atcgttttga cggatttttg
    12721 cagccattac attctcctta tagtacttct ggagctaaag agatgatttt cataaacttc
    12781 tcagaacgaa gttcacgagt caccggtcca aaaatacgag taccgattgg ttgctcagtg
    12841 ttattgttta aaattacaca agcattgcca tcgaaacgaa taactgcgcc atctgggcga
    12901 cgaacaccct tcttggtgcg cacaacaact gcttttaaca catcaccttt tttcacttta
    12961 ccgcgtggaa ttgcttcttt tacagtaact ttaatgatat cgccaatagc agcgtaacga
    13021 cggtgcgatc cacctagaac cttgatacac attacgctac gagcccctga gttatcagca
    13081 acatccagca tagtctgttc ttggatcata ttagtgctcc gttaaaataa aaaaacaccc
    13141 tttcgggacg aacctattta tacaaatata aatagggtgc aaaatatact acaaaaacca
    13201 ctagttaatc aagtgaattt ttaagctaat ttaatagttt aagtaagctt atttataaat
    13261 tgtttcaact atcaataaac tgtcctataa ctcatataaa aaccccaaga tatcttgggg
    13321 tttaactaac attactctac agtcaccgct tttgcaaggt tacgaggttg gtcaacgtcc
    13381 gttcctttga ttaaggcaat gtgatatgaa agtagttgta acggcacggt gtagaaaatc
    13441 ggtgcggtta cttcatcaac tttcggcatt acaatcgttt tgaagccttc tgcttcttca
    13501 aaacctgcat cgtgatcggc aaacacatat aactgaccgc ctcttgcacg cacttcttca
    13561 atattggatt tcactttctc aagcaagtca ttttccggtg ctaccaccac taccggcata
    13621 tcgctatcaa ttaatgctaa cgggccgtgt tttaactcgc ctgcggcata agcttctgcg
    13681 tgaatatatg aaatctcttt taatttcaat gcagattcca tcgcaatcgg gtaatattct
    13741 ccacgaccta agaacaatgt gtggtgttta tccgcaaaat cttccgataa tttttcgatt
    13801 tgtttatcga acactaacgc actttcaatt tgtgctggta agcgttgtaa agattgcacg
    13861 atatggtgtt cttgctcttc actcattctg ccttgtaagc gtccaatcgc cacatttaat
    13921 aacaataagc aagttaattg agtagtgaat gctttggttg atgctacacc aatttcaaca
    13981 ccagctttgg ttaagaatgc aaaatcggat tcacgcacta atgaagaact tgccacatta
    14041 cacaccgtca ttgccgccat atagccagat tctttcgcta aacgcagtgc agctaacgta
    14101 tctgcggttt cacctgattg tgaaagcgtg attaataagc tgttcgggcg agtaacgaat
    14161 ttacggtaac ggaattcgga ggcaatttcc acatcacagc tcacgcctgc aatggattca
    14221 aaccaataac gtgaaaccat accagcattg taagaggttc cacaagccac aatttgcacg
    14281 tgttctactt tcgataaaat ctctgccgca ttcggtgcaa tggctgaaat atctacttta
    14341 ccgtctttga tacgaccatc taaggtattc ataatcgcaa ccggctgctc aaaaatctct
    14401 ttttgcatat agtgacgata ttgtccttta tctgccgcgt ctgcctcaaa attgccttcg
    14461 tgaatttcac gctctacctt gttgccttca cggtcgtaaa tatccactgt gcgacgggta
    14521 atttcggcta catcaccttc ttctagataa gcaaaacggc gagttacgct taataatgca
    14581 agtgggtctg aagcaaggaa gttctcgcct acaccgtaac caatcactaa cgggctgcct
    14641 gagcgagcca caattaaatg ctccggctct tcttcattta ataccactgt gccgtaagca
    14701 ccacgcagtt gcaccacggt tttttgtacc gcttctaata atgaagaagc agaacgcaat
    14761 tcccattcaa ctaaatgagc aatgacttcg gtatcggttt gagattggaa cacataacca
    14821 cgctcttgta acactatttt taactcttcg tagttttcga taatcccgtt atgaactact
    14881 gcaattttgc cgctgcggtg tgggtgagca ttagtttctg acggctcgcc gtgcgttgcc
    14941 cagcgagtgt gtgcgatccc agtgccgcct aatagtggct tagtgtctaa cgcctcatct
    15001 aaggcttgga ctttaccgac acggcgtaca atttgcattg ttttatcatc tgcatttaat
    15061 actgctacac cagcagagtc atatccacgg tattctaagc gatgtaaacc atcaaccaag
    15121 atttctgcga tatcacgttg tgctactgca cctacaattc cacacataaa tttgctttcc
    15181 tatgtttaag tttaaagatt catttgagct actgctattt tgcaataacc acttcgacac
    15241 ccattttttc gatttgttct ttcgtttcaa aacttaattg actgtcggta ataattttgg
    15301 taatattttg ccattccaat tcaatattcg gcattttccg accgattttt tgcgattcaa
    15361 ttaacacaat cacttcacgg ctcacttctg ccatcacctg acttaagcca actaattcat
    15421 taaaggtagt cgtgcctcga gccaaatcta aaccgtccgc accaataaaa agctgatcga
    15481 aatcatatga acgcaatacc tgttctgcta ctttgccttg aaaggactca gaacggctat
    15541 cccacgtacc accggtcatc aacactgttg gttcgcattc aagggaagtc aattccgccg
    15601 ctaaattcag cgaatttgtc atcaccacca agccggtttg gttcaatgct tttaccaaag
    15661 ctccggtcgt gctgccgctg tcaataatga tgcgattatg atcacgaata caatcacgtg
    15721 cggcttgagc aatcattttc ttttgaatcg aaagttgctc aataaacgct tcttccatca
    15781 tttccgatgg aatttttacc gccccaccat acttacgcaa taaaaaacca ctttcttcca
    15841 aagcggttaa atcttttcta atcgtaactt cagacgtctc aaagaaatga gcgagttcat
    15901 ctacactcac ttcatttttc tcttgtacca tttgaacaat taaatggcgg cgttgttgcg
    15961 tgttacgttt tgacattgta atcttcactt aaatttcgtt tcaaaacttt tgcattataa
    16021 agaaagctcg cgaaaagaaa agcagaaaat gcaaaattta caaaatctat acaaaataaa
    16081 accgcttgta atattgattt acaagcggtt gatttcttga aattttttgc aattatttga
    16141 tttggctacc aatcacgcca ccaagtgcgg caccacctaa agttgcaccg gtagattcac
    16201 caatcgcgtg accagccaca ccgccaattg ctgcaccgat tgcagtatta cgttgcgttt
    16261 ttgtcatatt gttacagcca gacacagcaa ccattaatac cattgcacca acaactttca
    16321 aaatagattt cataataatc cctcataatt aatcaatttc aaataagcca atattcttgg
    16381 ctatgctata agatttaatt tatttagaaa ggttcaacta ctaccaccta tgaattgcaa
    16441 attttttcac aatttaggcc gcttgttgat tgaactgtga gctcgctcac agaatttcat
    16501 gacatttctt gctatattgt gtagcaatct atgcgataac tcatcaagga aataaaaatg
    16561 aaactgaaaa aattatcttt agcactctcg actttattac tcggctcagc cttttccaac
    16621 tctgtattag cagaaggtcg cttaaccgtt tattgtagtg cggccaacga actttgtgag
    16681 caagaagtgc aagcattcgg caagaaatac gatgttaaag tggcttttgt gcgtaacggt
    16741 tcaggcagca cactggcgaa aattgaggct gagaaaaaca atccccaagc cgatgtatgg
    16801 tatggtggca cgctagaccc acattcacaa gcggcagaaa tgggcttgtt agagccgtat
    16861 aaatcgccaa acctcgaaca aattatcgaa aaattccgtg atccggcaaa actaaaaggc
    16921 aactactcct ccgctgtgta tatggggatt ttaggttacg gcgtgaattt agaccgtttg
    16981 aaaaaactcg gcattgaaaa agtacctagc acttgggaag aattgttaga ccctcgccta
    17041 gccggtgaaa tccaaattgc cgatccgcaa agctccggca cagcttatac agcaattgcg
    17101 actttcgtgc aactttgggg cgaagagaaa gccttcgact atttccgcaa attgcataaa
    17161 aacatttcgc aatataccaa atccggcatc acaccggctc gcaacactgc ccgtggtgaa
    17221 accaccatcg gtatcggttt cttacacgac tatgctatcg agaagaaaaa cggtgctaat
    17281 attgaaatga ccgccccaac agacggtaca ggctacgaat taggtggcgt gagtatcctc
    17341 aaaggagcaa gaaaccttga taatgccaaa ctgttcgtgg attggtcgct ttctaaagag
    17401 gctcaagaac tctcttggca aaaaggcaat gcgttccaag tattaaccaa caccaccgcc
    17461 gaagcctcgc cttacgccct cgatccgaaa aacttaaact taatcaatta tgattttgag
    17521 aaatatggct caagcgaaga gcgtaaacgc ttgatcgata aatgggtaaa tgaagtaaaa
    17581 ttagcgaaat agggttgatc tttccactga ggggataagt gattatcccc tctctcatta
    17641 taaaaatctg tgaggtgtta tgcagaattt ttccttttcc cgaccgcttg tttgggtgtt
    17701 tatcgggtta ctcggctttc tcttattacc gtccaaagcc ttagattacg ggctgtttga
    17761 ctcaacctct gacgaactgc tcgccgcaat gggttggtcg agtatcaaca ttacttgggc
    17821 gtggttttta ccgcttttgg tatttttatt gccaaattcg accgcttgca aaaccagagc
    17881 caagctggaa ttagtcgggt tgggcgtact attcgccttt attttcctgt cggcgattgt
    17941 gctgaaaatc agtcttggtt atgcggtgtt gccgttgatt attgccatta tggggcttgc
    18001 aacccagaat ttagccacgc ttaaagtaat gcagggtgac cgttttatta tcggctcgtt
    18061 actgagcatt attctgctga ttttcttttt tattgtatat ccgaccatcg ccatttttgt
    18121 gtcgatgttc tacaacggct cggaatttgt gccaagccaa gtgctaacga ttttgcaaca
    18181 accttatgtc gttcgggtca ttggcaactc gctctcggtt gccggcacag tcggcgttct
    18241 ctccacccta ttcggcttgg cgtttgccct ctacaccacc cgaattgcca aacgctcagc
    18301 gtttatcggg cggattttct cgattttgcc catcgtcaca ccaccgtttg tagtcggttt
    18361 aggcgtaacc ctaatgcttg ggcgttccgg ttatgtgact gaatttctag tggactattt
    18421 cggctttgcc aacaactggc tgtacggttt caccggtatt gtgatcgccc ataccctcgc
    18481 tctcacgcca atgtcgttta tgattttgga aggagcattg aaatccattc acccatcggt
    18541 ggaagaggcg gcttacaccc tgcgctccaa tcgctatcaa gcctttttta acatcatttt
    18601 cccattgtta aaaccggcgt tggcaaactc ctttttggtg gtggcgatcc aatcccttgc
    18661 cgatttcagt acgccgttgg tgttgggcgg cagttttgat gtgattgcaa cccaaatcta
    18721 cttctacatc gccggctccc aactggatta cgcctccgcc agcacactcg gggcaatttt
    18781 gctggtattc tccctagcca ttttcgtgat ccaatacctc tggatcggca accgctctta
    18841 tgtgacggtg tcgggcaaat cctatcgggg cgatgtgcaa gacttaccaa gcggtatgaa
    18901 atggctgatt atttgcactt tattgttctg gggaacgttc aatttagtgc tatatggcag
    18961 tattttctac ggtagtttca ccgtgaactg gggcgtggat tataccttaa cccttgataa
    19021 ctatatcaag ctgttcgggc aagggtttag cgatggtggt ttcccttcgt taattcaaac
    19081 cgtgattttc gctgctgccg ccgctccaat taccgcccta tttggcttgc tgatcgccta
    19141 tgtgacggtt cggcgtgatt tcaaaggcaa gaaaacccta gagtttttaa ccctgctctg
    19201 ctttgccgtg ccgggaacgg tggcaggcgt ctcttacatt cttgccttta acgatgcccc
    19261 gatttactta accggcaccg gtatgatcat tattctctca atggtaatgc ggaatatgcc
    19321 ggtgggtatg cgggcggcga ttgccggctt gaggcagtta gataaatcac tggacgaagc
    19381 ctcgctctcg ctgaaagccg gttcgttcaa aacaatgctg tttgtggtgt taccgctgct
    19441 caaaccggct ctgctctccg ccctcgtcac cagctttgtg cgagcaatga ccaccgtgag
    19501 tgcgattgtg ttcttagtca ctgccgacac ccgtgtggca acctcctaca ttcttaaccg
    19561 tgtggaagac ggcgaatatg gcattgcgat tgcctacggc tctattttaa ttgtggtgat
    19621 gatggcgatt atcctgattt ttgactggat tgtcggcgac acccgtatcg cccgttctaa
    19681 ggcgaaaaaa atgtaaaaag acatctactc tctcccttta tgggagagag acagcaaaat
    19741 acttcgttca gaagtatttt tcagagagag ggatataatt aaaaggacaa tatatgaaca
    19801 acgatttctt agttttaaaa aacgtcacca aatcttttgg caaggtaacg gtcattgaca
    19861 acctcaacct cagcattccg caaggcaaaa tggtgacctt acttgggccg tctggttgcg
    19921 gaaaaaccac ggtgctacgt ttggtggctg ggctggaaaa cccaacttcg gggcagattt
    19981 ttattgatgg caaagatgtg acccaaagtt cgatccagca ccgtgatatt tgcattgtgt
    20041 tccagtctta cgctctgttt ccgcatatgt cgattggcga taatgtcggc tacggcttga
    20101 aaatgcaggg cgtaccgaaa gaaaaacggc tgcaacgagt gaaagaggcg ttggaattgg
    20161 tggatttagg cggttttgaa gatcgctttg tcgatcaaat ctccggcgga cagcaacaac
    20221 gtgtcgccct cgcccgtgcc ttaattctga aaccgaaagt gctactgttc gatgaaccgc
    20281 tgagtaacct tgacgctaac ttacgccgtt caatgcggga gaaaatccgt gaattacagc
    20341 aacgtttaaa cattacttcc ctttatgtga ctcacgatca gtccgaagcc tttgcggttt
    20401 cagatgaagt aattgtgatg aacaagggaa aaattatgca aaaagctcca gccaaagagt
    20461 tataccttcg ccctaattct ttattcttag caaattttat gggtgaaagc agcatttttg
    20521 aaggcacgat agctggcaac caaattaata taaatggata tcaatttacg ttatcaaatg
    20581 ctgaacaatt tgagttaccc gatggggaat gcttagttgg cattcgtcca gaagctattc
    20641 atttagctga acaaggaaat ataagtcaac tctgtaaaat taaaaatgca gtttatatgg
    20701 gaaatcattg ggaaattata gctgaatggg aagggaaaga tttattagtc aacactaaac
    20761 ctgaaaattt ttaccctcat atcaaacagg cttatgtaca ttttatcgaa caaggggttt
    20821 ttcttttaaa gaaagagcta taacgaattt atactaaatt aagaggaagg tagttataac
    20881 tatttagcaa ttttgagaaa aataggccgc atgcaaaatc tcttgatgac aagcggtctt
    20941 ttcttgccga ttttttgcaa atgcaatgat atggctggct taatcg
//
LOCUS       DANLUT010000020        19791 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLUT010000020 DANLUT010000000
VERSION     DANLUT010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19791
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(149..1153)
                     /locus_tag="PXB38_000684"
     CDS             complement(149..1153)
                     /locus_tag="PXB38_000684"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL5353037.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRVKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(1241..2080)
                     /locus_tag="PXB38_000685"
     CDS             complement(1241..2080)
                     /locus_tag="PXB38_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL5353038.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            2269..3603
                     /locus_tag="PXB38_000686"
     CDS             2269..3603
                     /locus_tag="PXB38_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5353039.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(3683..4093)
                     /locus_tag="PXB38_000687"
     CDS             complement(3683..4093)
                     /locus_tag="PXB38_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5353040.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(4216..4893)
                     /locus_tag="PXB38_000688"
     CDS             complement(4216..4893)
                     /locus_tag="PXB38_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5353041.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            5011..5823
                     /locus_tag="PXB38_000689"
     CDS             5011..5823
                     /locus_tag="PXB38_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5353042.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(5871..6140)
                     /locus_tag="PXB38_000690"
     CDS             complement(5871..6140)
                     /locus_tag="PXB38_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5353043.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(6113..6790)
                     /locus_tag="PXB38_000691"
     CDS             complement(6113..6790)
                     /locus_tag="PXB38_000691"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5353044.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(6892..7149)
                     /gene="rpmA"
                     /locus_tag="PXB38_000692"
     CDS             complement(6892..7149)
                     /gene="rpmA"
                     /locus_tag="PXB38_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL5353045.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(7170..7481)
                     /gene="rplU"
                     /locus_tag="PXB38_000693"
     CDS             complement(7170..7481)
                     /gene="rplU"
                     /locus_tag="PXB38_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL5353046.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            7759..8757
                     /gene="ispB"
                     /locus_tag="PXB38_000694"
     CDS             7759..8757
                     /gene="ispB"
                     /locus_tag="PXB38_000694"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL5353047.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIVADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            8860..9615
                     /locus_tag="PXB38_000695"
     CDS             8860..9615
                     /locus_tag="PXB38_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL5353048.1"
                     /translation="MTEQNQQNQQPQEHIESVRARRRAQNQKKDPNAPFVREKLTLPN
                     GHNKLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKW
                     GIPFIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVF
                     TSCLGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQE
                     YCGCVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            10032..10967
                     /gene="fabD"
                     /locus_tag="PXB38_000696"
     CDS             10032..10967
                     /gene="fabD"
                     /locus_tag="PXB38_000696"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL5353049.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            10984..11448
                     /locus_tag="PXB38_000697"
     CDS             10984..11448
                     /locus_tag="PXB38_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353050.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            11469..12191
                     /gene="fabG"
                     /locus_tag="PXB38_000698"
     CDS             11469..12191
                     /gene="fabG"
                     /locus_tag="PXB38_000698"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5353051.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNSGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            12304..13602
                     /gene="brnQ"
                     /locus_tag="PXB38_000699"
     CDS             12304..13602
                     /gene="brnQ"
                     /locus_tag="PXB38_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL5353052.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISADTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            13648..14472
                     /gene="mutM"
                     /locus_tag="PXB38_000700"
     CDS             13648..14472
                     /gene="mutM"
                     /locus_tag="PXB38_000700"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL5353053.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWAVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLRILSQTADIAFGKHDHIDLVTTNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFSQVLQVYGRKGEACNDCGKTIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(14555..14989)
                     /gene="dtd"
                     /locus_tag="PXB38_000701"
     CDS             complement(14555..14989)
                     /gene="dtd"
                     /locus_tag="PXB38_000701"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL5353054.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(14964..15809)
                     /locus_tag="PXB38_000702"
     CDS             complement(14964..15809)
                     /locus_tag="PXB38_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL5353055.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GSGALSLGQHLLELTPFLLIWLLFTLVYKFIPIRKVKFIHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSVNDR
                     LNSAG"
     gene            complement(15811..17049)
                     /gene="proA"
                     /locus_tag="PXB38_000703"
     CDS             complement(15811..17049)
                     /gene="proA"
                     /locus_tag="PXB38_000703"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL5353056.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDATAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            17333..19216
                     /gene="mutL"
                     /locus_tag="PXB38_000704"
     CDS             17333..19216
                     /gene="mutL"
                     /locus_tag="PXB38_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL5353057.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDWQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYIQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTELGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(19235..19504)
                     /locus_tag="PXB38_000705"
     CDS             complement(19235..19504)
                     /locus_tag="PXB38_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5353058.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(19491..19757)
                     /locus_tag="PXB38_000706"
     CDS             complement(19491..19757)
                     /locus_tag="PXB38_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5353059.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
BASE COUNT         5828 a         4399 c         4022 g         5542 t
ORIGIN      
        1 ttaaaagact tacccaagat ttttatttga atttttaatt tactccccgg gttagtgttt
       61 tccacaaatc ttcttcagct acgatgatct agccttaagc taaaaagcag attaccaccc
      121 aagataatcc gctttttaga cttagctatt atgccaaact tgctaccatt accgctttaa
      181 tagtgtgcat tcgattttct gcttgctcga atgccacatt cattggcgat tcaaacacct
      241 cttcggttac ttcaatgccg tttgccagtg ccggatattt ttcggcgatc tctttaccga
      301 ctttagtttc actgttgtgg aacgccggta agcagtgcat aaatttcact ttcgggttgt
      361 cggttgcttg cattaattca ggcgttactc ggtaaggcat taataaatct atacgttcag
      421 tccagctctc tagcggttca cccattgaaa cccaaacatc agtatgcaca aaatcgacac
      481 ctttaattgc agtctcaata tcttcggtta ccgtcattct tgcccccgat tcagctgcaa
      541 atttttcaca cattttcacg aatgcatctt ccggtaataa ggctttcggg gcacaaattc
      601 gcacgtccat ccccaatttc gccccaatca acaggagtga attacccata ttattgcgag
      661 catcgccgat atagacataa ctgatttggc taagcggttt ttcgcaattt tcgatcatcg
      721 ttagcacgtc agccaacatt tgagttgggt ggaattcatc ggttaagccg ttaaacaccg
      781 gcacgccggc ataatcggca agctcttgta ctaccgattg tttaaagccg cgatattgaa
      841 tcgcatcata cattctgcct agcactcggg cggtatcttt cattgattct ttatgcccga
      901 tttgcgagga gttcgggtca atataggtaa cgtgagcccc ttgatcgtaa gctgctactt
      961 caaaggcaca acgagtacgg gtcgaggttt tctcaaaaat taaggcaata tttttgcctt
     1021 ttaatttttg ctgctcagtg ccagcatatt tcacccgttt taaatctctt gctaaatcca
     1081 acaaaaagcg aatttcacgc tcagtgtggt ttactaaact gagtaaatgt ctgtttttta
     1141 agttaaatgc cattttgttt ctccctgtaa acattaaaat ttattttatg caaaataatt
     1201 gcataaaaat tcacttatag caaacagaat ttgcttaccc tcattcgggt aaataaaact
     1261 cgcctttgcc gactaaaata acctctccgc caacaaaaat cttcccgttt tgatcgactt
     1321 ttaataacag gcgattcggc cgttgaattt catcaccttg tgagatctga agctggattg
     1381 gtattttgcc ttgtgcaatg tgccaaccgc ctaaatttgc cgctgccgaa ccggtgccgg
     1441 ggtcttcgac aatcgaacct tgcgattgaa aaaacagtcg cactttcgcc tcatttccct
     1501 cacgacacca aacatataca ctgtctttca aaaatgcttt ttcagccaga tttgcattta
     1561 ttttgcactt ttcgaccgct tgttgagaag ctaactcaac caataactgc tccacgccgg
     1621 tgtttacata acaaggctcg gacgcaatat ccgcaacatt cagccccaat attgaggcac
     1681 attctgcacg gcttagcggt gtgttttcca ggttcacacc attggttaaa gcaaaagtag
     1741 tcacattatg ttgatgttga atcgctacca atccggcatt agtttgcaag cgataggttg
     1801 ttggaaaatc aaaggcggaa tgcaacacaa aagccgctcc aacagttggg tggccggcga
     1861 acggcatttc ataatcaggc gtaaaaattt tgagtttttt gaccgcttgt gaatcggtgg
     1921 aagattgaat aaataccact tcagaaaggt taaattggcg agcaataagt tgcatttgta
     1981 agtcggttaa tccgtccgct tcataaaata ctgcaagcgg gttgccgcca aaatggcttg
     2041 ttgcaaacac attcaccagc aaataaggat agctctgcat ttatcactcc ttacataaac
     2101 ttaaagccac attgggcgaa aattctacca ttttggtggc gaatcgtaaa attggaaaat
     2161 ttatcggtat ccctctttag agttaactat ttttgattta tttcaaagtt ttaaaaaaag
     2221 attaggttat acttctttct agtgattatt ttttaatttg aggttcttat gctttatgca
     2281 gaatttttac ttttattagc ctttttatat gcaggtagcc gttacggtgg catcggttta
     2341 ggtgtggttt ccggcatcgg cttatttgtt gaagtgttct tcttaggaat gccgctttcc
     2401 gctccgccaa ttagcgtgat gctcgtgatt ttggctgtag ttacttgtgc ctccattcta
     2461 gaagccgctg gcggtttgaa atttatgttg caagttgccg aacgcatttt gcgtagcaac
     2521 ccaaaacgta ttacctttct tggcccactt gtcacttatc tgatgacctt aatgctcggc
     2581 acagggcatt cggtttactc tattatgccg attatcggtg atattgcctt aaaaaataaa
     2641 attcgcccgg aacgcccgat ggcagcagcc tctgttgctt cacaattagg tattaccggt
     2701 agcccacttt ctgctgcagt tgcctattac ttaaccgaaa tcgttaaatt accgggcttt
     2761 gaaggggtga ctttattgaa tgtagtcggc gtaaccatca ccgcaacctt ctgtggtgtg
     2821 attgcgatgt cattatatag cttacgtcgt ggtaaagagt tggaagacga tcctgagtat
     2881 caacgccgta tgcaagaccc tgagctacgc aaacaaatcg agcaaacgag tgcaacgtct
     2941 ttagacgaaa aactaccggc aagtgcgaaa aactcggttt atctgttcct agccgctatt
     3001 gcaaccattg tgattattgc aatgattccg gctattaaac caacggttgc tgctacagga
     3061 aaagttgccg gtatggatca aatcattcaa atcgtgatgc taactttcgg gggtttaatc
     3121 ttaattttaa ctaaaaccga cccgaaaaaa gtaccaaacg gcatcgtttt caaatccggt
     3181 atggtagcaa ccattgcgat tttcgggatt gcttggatga gtgatactta cttcacccat
     3241 gcaatgccag cgttcaaaga aggggtaaca gaaatggttc gagcccaacc ttggacattc
     3301 gccttcgcct tgtttgcggt atctgtagta gtaaacagcc aagccgtaac cgcaaaaatg
     3361 ttattaccgg taggcattgc aatgggcttg cctgctccat tattagttgg tttaatgccg
     3421 gcaacttatg cttacttctt tattccgaat tatccgtctg atatcgcaac cgttaacttt
     3481 gacgtaaccg gtacaactaa aatcggtaaa tattacttca accacagctt tatggctccg
     3541 ggtttagttg gcgtaattac tgcctgtatt gtcggtatcg ccgttgcaaa tgtgctaatt
     3601 taattttaac aaaaaaacaa gcggtcagat taagtaaatt ttttaccaaa tctgaccgct
     3661 tgattattta ctgcaaaacc aattaggctt tgttaaagag ttttgcatct aacgagtatt
     3721 ttccgccacc gataaaaata taggttaaga ataataccga atacacgcct gctaattcac
     3781 cgccgtttaa taaaggtaat agcacattgc cttgagctcc gtgagcaata aagaacgcgt
     3841 atgccatcat acctgaaagg ataaacgctg tttggcgggt aaatagacct aaaataaaga
     3901 aaattccgcc cacaatttcc aaaataccgc ctacaccata aatggaggca aggggtacac
     3961 tgccgtttcc gttggtcatc gacattggaa attcaaaaaa tttcgctgtg ccgtgtaata
     4021 aaaacatata accggcaaca acacgggtga ttaaaaacgc taaaggttgt aaatttgtta
     4081 aagtagagtt catttgcttt ccttaaaata aattgtgata taaaggtcaa ttgattgagg
     4141 caggcattct attttaaaaa cctatacttc acaatccagc cgtcatgaaa tagattattt
     4201 accattaata aacaattagg ctctcgctaa cacccaaacc tgaatttcta ctactccagc
     4261 tttgagtaac tcggcacaaa ttacatttaa ggtggaacct gtggtgagca catcatcaac
     4321 aatcgccact cgtttatagg cttttaacgg ttgatagaaa aatgccccac gcagattttt
     4381 ccgccgttca gcagcggtca attctctttg tgagacggtt gctctcacac gttgtaaact
     4441 ctgggtatcc agcggaatct gtaaccactt cgataaccaa tcacacaata attcgctttg
     4501 attaaaccct cttttccaat gtctgtgcca aaaaagtggt acaggcataa tcacttcagg
     4561 caagctcaga acctgttccc tttgagcttg tttgattgcc agcagcaatt gtcgggcaag
     4621 ggcttgatcc caccaatatt gctgctggaa cttaaattga tgtacccaat gtgaaagtgg
     4681 cgctcggtat tcatttaccc tcactaattt atgccacttc ggttcatttt tcaaacaata
     4741 gccacaagcg tttcgaaact ccaccgcact cattccacaa tgacgacaat aaggggttgg
     4801 ttttagcaat ttttggcaat ggctgcaaat gccttgcacg ccaatagcga gtggatgatt
     4861 acaatgaaag caacggaagc cgaataaatt cacatttcct ccttttattt gcagattatc
     4921 aaatttagcc ttattttttc cggctatttt tgtgacatcg ctcgaaaaaa gagtaaaatc
     4981 tcattatcag taaataaaaa ggaaaccgag atgaaatccc tccaaaaacc gatcaaaatt
     5041 gtctttttcg atattgatga caccctctat gtaaaacata aagcctatat tccaaaatca
     5101 attaccgagc aggtattacc tcgtttaaaa gccaaaggca ttattccggc cattgccacc
     5161 ggcagaaatc acggctgttt tcctgaagct ctcaaacctt atttaaaccc tgaaatcggt
     5221 tttgagctgt ttgttaccat taacgggcaa tataatttct ataaagatca aataattagt
     5281 gattattcgt taagccgtga gcaaattgaa cgtattatcg aaaaagcgaa tgctttgggt
     5341 attctgtatg cctttattac gccaatgacg attgcagttt ccgaaaccaa tccgattgtg
     5401 cacgaagcgg ttttaccgat cacaccgaat tatttgatcg atccacacta ctacgaaaaa
     5461 gagaaaattg tgcaaatgtt actgttctac accgaagagc agaaacaagc ggtcgaaaat
     5521 agtggcattt ttgcaaatga tttaaaagag gctcgctggc accccaatgc ggtagatatt
     5581 ctgcgaaaag aaaattcgaa agctcgtggc attcaagatg tattagcaac cttgaatatt
     5641 gagattgaaa gtgcgatggc atttggcgat ggtattaacg acttggaaat gctcccgacc
     5701 gtaggtgttg gtgtggcaat gggtaatggc gtgccggaat taaaagcggt ggcagatttc
     5761 atcaccaagc cgcttgagga agacggcatt ctatacgctc ttgaaactct tgaggtgatt
     5821 taaaagcaag cggttgtaag tttttctcca tttacaaccg cttgtagttt ctaattacgc
     5881 ctaaatagct tatcgcctgc aatcgctaaa atcgccccac tgacgaccac caacgcccca
     5941 agataactga tccaattcat atccggcttg gcaaaaatat gcggataaaa atagtagcta
     6001 aggttggaaa agatcatcgt aaaaatcggc aacatcgtgg ttacaatgct aacctttgaa
     6061 gtatcccaat gattcaacgc ctcaccgtat gaaccgtagc caattaaggt gttcaacagc
     6121 aataaataaa gcaaccccac agaaaaccat cctcaagatt gcctaactgt gccggtgagg
     6181 caaacggtaa catcagcaga gaacagccga tgtaaataat aaacagcact tgctgagagt
     6241 taaatttcgc taataataat ttttgagcca cgccgtatag cacccaaatc aagctggctc
     6301 cggcactcaa taacactccg agagcgtagg tgttgagctg taaaatttca gcaaatttat
     6361 cgttaaaaaa tgcgacaagc cctgcaatca ataacacaaa tccaatcttt tgaaacaagc
     6421 cgaacttttc cttaaacaat aatacgccta gtagaatcat cgaaaatgga gctaactgcc
     6481 acaatacttg gttaatggtg ggcgaaacat agtgtagagc ctctgcaaac aaaaagaaat
     6541 ttgccgacag accacacacc cctaacaaaa ttaaaccgag ttcttttttg ctacaagcgg
     6601 tcaatttggg taaacgtttt gcaaatccta gaatcagcaa tagccctact gatgccacaa
     6661 cgaacctaac ccaaactaaa gtttgggcat ctatcacttt caatacttgc tgggcggcaa
     6721 tcggtagcgt tccccaggtc attgctgcgg ttaatgcaag tgaaaagcca agtaaggggc
     6781 gttgtttcat cgtggaaatt cctttttcta ttctatgttt ctatatttta gaaagattga
     6841 gatacaaaaa aaccccgcca ttggcgaggt ctcttattga ttttgaaatg attagtcagc
     6901 aatgatgctt acatatttac ggcttttctc gcctttcact tcaaatttaa ctttaccgtc
     6961 agcagttgca aataaagtgt ggtctttacc catacctaca tttgaacctg cgtggaattt
     7021 agtaccacgt tgacgaacga taatgctacc tgctaataca gattcaccac cgaaacgttt
     7081 aacaccaagg cgtttagctt cagaatcacg accgttacga gttgaaccac cagctttttt
     7141 agttgccatc ttctagatct cctctgaaat tatgcttgaa tcccagtgat tttcacttct
     7201 gtgaaccact gacgatgacc ttgttgttta cggctgtgtt tacgacgacg gaacttaacg
     7261 attttaactt tctcgccacg accttgtgct acaacttcag ccactacttt tgcacctgct
     7321 acaaccggtg caccgatttt aacatcttca ccgttaacga ccattaacac tgagtcaaat
     7381 tcaactttct caccagttgc aagttcaagt ttttctaaac gaactacttg accttcactt
     7441 actcggtgtt gtttgccgcc actttggaaa actgcgtaca tatttactcc gctatgtgcc
     7501 aactgctttt gcttttaggc actaaattaa ttcataaaaa tagggttgca attctacgga
     7561 aaaagattcg aaagagcaag agcgattttg agaatttttt gaaatttgca aaaaatggta
     7621 aaaatactac cgcttgtttc aactgcgact aaaaaacaat agactgctcc gattttacaa
     7681 caaaatcata attctttttt gaacacaggc taaattaagg tagaatctac tcaattttcg
     7741 tcttacttta tggattcgat ggctgtgcaa cttttttctt tagaacaaat tcaagccctt
     7801 gcgaatgaag atatgcaagc ggtaaatgcc gaaattttag ctcaacttaa ttccgaagtg
     7861 ctactgatta accagctcgg acattatatc atcgcaggcg gtgggaaacg tattcgcccg
     7921 ttaattgcgg tgcttgcggc tcgtgccttg ggttatcgtg gtaaaaagca tatcacggcg
     7981 gctgctttta ttgagtttgt gcatactgct acacttttgc acgatgatgt agtcgatgaa
     8041 tccgatatgc gtcgtggcag accaaccgca aacgcccatt ttggcaatgc ggctagtgta
     8101 ttggtagggg atttcatcta tacccgttcg ttccagatga tgacggattt agactctctg
     8161 cgtgtgttaa aagtgatgtc tgccgccacc aatgcgttgg cagaagggga agttcagcaa
     8221 ttaatgaacg tgaacgaccc aaacaccact gaagcgaact atatgcgggt catttacaat
     8281 aaaaccgccc gcttgtttga agccgccact caatgcgtgg cgattgtggc tgatgcttct
     8341 gaggaaattg aaaccgcatt aaaaaattac ggttgctact taggcacggc attccagctg
     8401 attgacgata ttttagacta ctccgctcaa agcgaaagtt taggcaaaaa cgtaggcgat
     8461 gactttgtgg aaggtaagcc aaccttgcca ttgctccacg caatgcacgc tgccgacaaa
     8521 gcaggcaaaa ctactcaagc agagctgatt cgcaatgcta tcgaaaacgg cggcgaattg
     8581 gaacaaattc cacaagtatt ggcaattatg caagaacatc aatctctgga ttatgccatg
     8641 caaaaagccc gtgaagaagc ccaaaaagcg gtggattcat taggggtttt accggaaagc
     8701 gagtacaaac aagccttggt ttcattggcg tatttatcgg tggatcgctc ttattaattt
     8761 gcaaaaaatc atataaattt aaccacttgt aggggcaaat gatatttgcc ccataaccta
     8821 taattctttt gggcaaatgt tatttgcccc aacataacaa tgactgaaca aaaccaacaa
     8881 aaccaacaac cccaagaaca tattgaaagc gtacgagcga gacgccgtgc tcaaaatcag
     8941 aaaaaagacc cgaatgcccc gtttgtgcgt gagaaattaa cgctgccaaa cgggcataac
     9001 aaattactac tgcactcttg ctgtgcccct tgctcgggtg aggtaatgga ggctattcac
     9061 gcctccggca ttgagtttac gatctatttt tataacccga acattcaccc gctgaaagag
     9121 tatttgatcc gcaaggaaga gaatattcgc tttgccgaaa agtggggtat tccgtttatc
     9181 gatttagacg atgactacga aaacgaccga aaagagtggt tcaaaaaagc caaaggaatg
     9241 gaatgggagc cggaacgagg cattcgttgc acaatgtgct ttgatatgcg gtttgaaaaa
     9301 gcagcggaat acgctcacaa caacggtttc cctgtattta ccagttgctt aggcatttcc
     9361 cgatggaaag atatgaacca aatcaacgac tgtggtcacc gtgcagcagc caaatttgat
     9421 gacgtggttt actgggacta caactggcgt aaaggcggcg gctcacaacg aatgatcgaa
     9481 atcagcaaac gtgaacgttt ctaccagcaa gaatactgcg gttgcgtcta ttcgttaaga
     9541 gatagcaaca aatggcggtt ggaaacaggg cgtcagcgga ttgaaatcgg taagctctat
     9601 tactcacccg attaaatgtt acttttcttt gcttcgccaa agaaaagtaa ccaaaagaaa
     9661 ggcggcccga acttcgctta gttacgattt ccttaacgga aaatttgtaa actcgctacg
     9721 ctcaaacagt acaaattttc ctagaaatcg caagtcgctc agacgggaca agcggtacat
     9781 tattcaaaat tttttacaaa atatagtgat gtactcttcc cttctgaacc gcccgaacgt
     9841 gtttgaattg gtaggaaaat ttactctgag cgaagcgaat gtaaattttc cgtgaaacca
     9901 attcaaacta agtgaggata agcggtgaag taggggtgtt tctttggtta ctttctttgc
     9961 acaagcaaag aaagtaacga aaactcagat atagatttca acttaaaaat ttacagaagg
    10021 aataataaca aatgtcaaaa ttcgctatgg ttttccccgg tcaaggctca caagcggttg
    10081 gaatgcttgc cgaccttgcg ccacaatatc caatcgtgga agaaaccttc aaacaagcaa
    10141 gtgatgtgct tggctatgac ttatgggatt tagtgcaaaa cggtactgcc gaagagttag
    10201 ggcaaaccca ccgcactcaa cctgcgttgc ttgcctcaag cgtggcactt ttccgcattt
    10261 ggcaacaaaa attccctgag caaaaaccag ccgtgatggc agggcatagt ttgggtgaat
    10321 actcagcgtt ggtgtgtgcc ggtgtgttgg atttccaaga tgcgattaaa ttggtcgagt
    10381 tgcgtggtcg tgcaatgcaa gaagccgtgc cggcaggcag cggtgcgatg tttgcgatta
    10441 tcggtttaga taacgaaagc attattaaag cgtgcgagca agcagcaagc gagaccggtg
    10501 aaattgtctc tgcggtaaac tttaacagcc cggggcaagt tgtgattgcc ggcacaaaag
    10561 cagcggcaga aaaagcagga gaattgtgta aagccgcagg tgcaaaacgc gcgttaccat
    10621 tagcggtgag cgtaccttca cactgtgctt taatgaaacc ggcggcagaa aaattagccg
    10681 aagccttgca aaatattgag ctaaatcaac cgcttgtccc tgttatcaac aacgtggatg
    10741 tggcagtgga aacagatgcc gataccattc gtaatgcact tgttcgccaa ctttacagcc
    10801 ctgttcgttg gacggaaacc gttgaaaaaa tggcacaaga tggcatcact actttatatg
    10861 aaatcgggcc aaacaaagtc ctaaccggtt tagcaggtcg tattgtaaaa gaattatcag
    10921 ccaaagcggt aaatgatgtt gccagctttg aggcggttga ggcttaattt tcgggagcgt
    10981 aaaatgagta aagaaaccct atttatgcta ataagtgcat tgattgcctt agtgatttta
    11041 cctttagctt atactgttgg tatcgctaaa gaaacattag gcggaaatat gggaatgtta
    11101 tccattgctg ccggttgctc atttttagcc tattttttaa gtctaaaccc gaaaattcgc
    11161 cacgccttta tcggaggttc agctattaca gctgctgcta ttcaagcttg ggtattatat
    11221 ggtgtgctat taagcgaaaa tgaccccaaa agtgcggtcg ttttatttca aatttatctg
    11281 tttagtagtt tagggccact gtttttttca gctatttggg catttactcg cccacgttgg
    11341 atttacccta aacaaggtag tgcggtgaaa tatgccttat ttggtggctt aacgaccgtg
    11401 ataaactact tgattaccct ttttattttt tatattctga cgttataacg tcatactaag
    11461 gagaatttat gagcaaaatc gcattagtta caggggcaac ccgtggaatc ggcaaagcga
    11521 ttgccgaaga attggtagca aaaggctaca tcgtagtcgg caccgcaacc tctgaaaaag
    11581 gggcggaatc tatttcagct tatttaggcg agaacggcaa aggcttagtg ctaaatgttg
    11641 ccgatgcaga gtcgattgag agcgtattaa agcagatcaa agagaccttt ggcgatgtgg
    11701 acgtgttagt caataacgcc ggcattaccc gtgacggctt attaatgcgt atgaaagatg
    11761 aggattggtt cgacatcatt caaactaact taacttcggt ttatcgttta tccaaagcgg
    11821 tattacgccc gatgatgaaa aaaggcggac gcattatcac gatcggttct gtggtcggct
    11881 caatgggcaa ctcggggcaa accaactact gtgctgccaa agcaggctta gttggttttt
    11941 ctaaatcttt agcgaaagaa gtagcaagcc gcggcattac ggtaaacgtg gttgctccgg
    12001 gctttatcgc cactgatatg accgatgagc taaccgaaga tcagaaaaat gcgattttaa
    12061 gccaaattcc tgccggtgaa ctcggttctc cacaagatat tgccaaagca gtcgctttct
    12121 tagccagcga tgatgcccgt tatatcaacg gtgaaaccat tcacgttaat ggcggtttat
    12181 atatgagcta atccgctaca agcggtcttt tttcaaccga gctttgtaaa ttcagagttc
    12241 ggttttgtta tttgttattt tgtgttatca cctgctttat aggtgaaaaa gtgtgaatat
    12301 gttatgacta gaaatacatt agtagtaggc tttttattgt ttgctatttt ctttggtgcc
    12361 ggcaatctga ttttcccacc aaaattaggt tatgaaagta gtacagaatt tttctcagcc
    12421 atttcaggct ttgttttaac tggagtaggg cttcctctac tcggtattat cgtcagtgca
    12481 ttttataatg gaggctataa atctgcatta gacaaaatcc acccttggtt ttctttagca
    12541 ttcctaactt ctatctattt agcgatcggt ccattctttg ccggtccgcg cacggcagca
    12601 actgcctatg aaatggcgat aatgccgttt ttaggggatt ccagccaagt gtcaatgtta
    12661 atttttacct taatttactt tgcctttacc ctatggttag cgctaaatcc aaataaaatg
    12721 gttgatcgca ttggtgcaat tcttaccccg atcttgctta taaccatcat tggattagtt
    12781 attcgagccg gctttatttt agataccgat ccacaaatca ctacgcctaa tacgaatgaa
    12841 caatcttact tttttaaagg tatggttgat ggctatctaa ctatggatgc acttgcttcg
    12901 ttagcctatt cggtaattgt attaaatgct attcgtggga aaggggtaag ccaagccgca
    12961 ttacaacgcc aaacagtttc tgccggctta gttgcagcag ttgctctagc tgtaatttat
    13021 atttcattgg gttggattgg taataatatg ccaattagtg cagacacact ttcgatgtta
    13081 tcagaaagaa aattggatct aggtacttac attcttaaca ctgtgactac ccaagccttc
    13141 ggtgaactcg gacgtagtgt cttaggagtg attgtttcac ttgcctgttt aaccactgct
    13201 gtcggtttag ccgtatcagt cagtgaatac tttaatgaaa ttttcccgaa aatttcatat
    13261 aaagtttatg ctatcttatt tactgtgatt agttttactg ttgctaacca aggattaaaa
    13321 gaagttatta gcaaatccat tccggtatta ttagttctct acccaatagc aatgactgtc
    13381 attttaatgt tgctgattaa tttagtgatt aaacttccgt tgtctgcaca acgtctatca
    13441 ctcctattag tgacaattgt agcgatagct tcagttgccg gtgtcgggtt taccgaaaac
    13501 ttgcctctaa aatcctactc gatggaatgg ctacctttcg ctatcattgg agctattatt
    13561 ggagcaatta tccacccgct taccggtcga aagcataaat aaagtaaagg cagtgagcat
    13621 tcactgcctc ttttttagga gagaataatg cctgaattac ccgaagttga aaccagcgtt
    13681 cgtggtgtat cgccctattt ggttgggcaa actattgaac aaatcatcgt tcgtcagcca
    13741 aagttacgtt gggcggtgag tcctgaatta agccaaatgg caggggcaaa aattaccgca
    13801 gtagaaagac gtgccaaata tctgattatc cgcaccgaca aaggcgatat tttggtgcat
    13861 ctaggaatgt ccggctcgct caggattttg tctcaaaccg ccgatatcgc tttcggtaag
    13921 cacgaccata tcgatttagt caccaccaat ggcacaattt tacgctacaa cgaccctcgc
    13981 aaattcggtt gttggctatg ggcagaaaaa gcagaagatc acgaactgtt gcgtaaactc
    14041 gggcctgaac cgctttcaaa cgatttcaca gcagattact tatttgcaaa aagccgcaaa
    14101 aaaacgaccg cttgtaaaac ctttattatg actaatgaag tggttgttgg ggtggggaat
    14161 atctatgcgt gcgaaagttt atttatggca ggcattcacc ctgagcttgc agcacaaaac
    14221 ctgactaaaa aacagtgcga acgtttagta aaaaccatca aagaagtact aacgaaagcg
    14281 attattcaag gcggcacaac actgaaagat tttatccaac ctgatggcaa accgggctat
    14341 ttctctcaag tgttgcaagt gtatggaaga aaaggggaag cctgtaatga ctgcggaaag
    14401 acaattgaaa ccaaagtaat cgggcagcgt aatacctatt tttgcccgaa gtgtcagaga
    14461 ttgccgaaat aatctaataa taaactctct ccccctgagg gagagagaca gcttgttgaa
    14521 acgttaagtg aaacaagcag agagagggta aaacctaaac ctgcaaccaa aaggtaacag
    14581 gcccgtcatt ttgtaggctg acttgcatat cggctgcaaa ttgtccggtt tgggtgtgaa
    14641 ttttagtggc ggcttgttga tgaaagtaag catacaaacg ttcggcatca accgggcttg
    14701 ccccttttga gaaactagga cgcaagcctt tattggtatc cgccgcaagg gtaaactgtg
    14761 aaaccactaa taagctgcca ccggcttgct gtacgtttaa attcattttc ccctcgctat
    14821 ccgaaaacac ccgataattc agcacttttt ccagtagctt atctgctttc gcttcatcat
    14881 cgtctttttc cacaccgagc aacaccaaca aaccgcttgc aatttcgcca acgacttgcc
    14941 cttcaacctc cacttttgcg aatttaaccc gctgaattaa gcctatcatt aacgctcccc
    15001 ttatctgttt ccatttcgtc taaaaccgcc gcaaattgtc cgccaagtaa taccacctgc
    15061 caacttaact gaatccataa cagcataatc ggtaacaccg ctaatgctcc ataaattgcc
    15121 tgataagacg gaaaagcagt aatataccaa ataaaggctt tcttccctaa ggtaaagaaa
    15181 atcgctgcca ttaatgcccc gatagcagcg tgtataaatt ttacctttct aatcggaata
    15241 aatttataca ctaaggtaaa aagtaaccaa attaataaaa acggcgtcaa ttctaataaa
    15301 tgctgcccga gcgataacgc cccacttcca ttaaaaatag aaagcgacat cacataggtg
    15361 ctaattgcaa tactcgcgcc ggcaagcagc ggcccaaaca gcaaaatgag aaaataaagc
    15421 aaaaaagaga accacatcgg gcgctgacga ttatcgtgcc aaatggtatt caatgcttca
    15481 tcaatactct taatcagcat aatagtaacc acaaataagc cgataaaact caccagcccc
    15541 atttgtttag cattactgac aaacaactca atgtattccg acaccatctc gctcgcactc
    15601 ggggcaaagt tgtcataaat gaacgctttt aactgctcgt ttgcttcgtg gaaaatcgga
    15661 aaaaaggtaa aaatggaaaa cagcacgaca ataaacggca ctatcgccag cattgtgcta
    15721 taagtgagat aaccggctga aatcgcaatg ttattttcat tgtaacgctt ggcaaagagc
    15781 ttaataaatc tccacagtcg atttaacatc ttaacctctc accaaataat cgccttcaca
    15841 cacccatttg taggtggtta aggcttctaa tcccatcggg cctcgtgcgt gtaatttctg
    15901 cgtgctaact gccacttctg cccctaaacc aaactcacca ccatcggtaa aacgggtgct
    15961 ggcattaata taaaccgccg tggcatcaac ctgttgtaca aattgacggg caagttgata
    16021 atcggaggtt aaaatcccct ctgaatgctg cgaaccataa tggcggatat gctctaccgc
    16081 ttgttgcagg tcattcacca ccaccacgtt aagatcaagc gataaccact cttggctcaa
    16141 ttttgcttga tcaagcggtt caattccttc aattttttgc aaatcgttac tgtgaatagt
    16201 aacgccaagc tgttgcattt tggcgaccaa tttcggcaaa aattccaccg caatcgcttt
    16261 ttccaccaac agcgtttcca gcgtattgca agtgcttggg cgttgcgttt tggcattagc
    16321 gatgacctct agagatttct cctgatccgc tgttttttcc acaaacagat gacaaacccc
    16381 aatccccccc acaatcaccg gaatggtcga attttcttta cagaattgat gtaaacctgc
    16441 accgcctcga gggatcacca tatcaatgta gcgatctagc ttcaatagtt ccaataataa
    16501 ggctcgatcc ggatccgtca ccgcttgcac tgccaatttc ggcaagccgg ctttttctaa
    16561 cgcatcttgc actacatcaa ccaacacagc attggtaaat ttggtctctt taccgccacg
    16621 caaaatcact gcattgccgg tttttaggca taatgatgcc acatcaatgg tcacattcgg
    16681 gcgagcttcg taaatggtta aaatcacccc gagcggcaca cgctggcgtt cgattttcaa
    16741 accgctgtct aacacgccac cgtccatcac ctgccccacc ggatccgcta atttggcaac
    16801 atttcgcaca tcgttagcaa tgtcttttag ccgatcttca ttcaataata agcggtcaat
    16861 aatcgccaat gaaatccctt gtgcttgagc aaattcaata tctttggcat tagcgtataa
    16921 aatttcttct gcacgttgct caaggctatc ggcaatcgtg agtaaggctt ggtttttctg
    16981 taggttgcca aattgagcca gctcaaaact agcttgtttg gcttgctggg caagttctat
    17041 catctgcata aattaggtct catttaatca atattctcca taatctaaca cgttctttta
    17101 tgtgaagaaa tatgcaaaag ccaagaaaat tggataaaat gggggaattt taaaacatta
    17161 cgcaattccc ctctccctga tttttctcct gaacggagaa aaatctatcc ctctcctaca
    17221 aggggagagg gtagaattta actctctccc cttgtgggag agagaccgcc tacagattcg
    17281 ttcagaatct gtaggcagag agaggggtaa aaacatataa aacttaaaca aaatgataaa
    17341 cactacccct aaacagctaa tccacattct tccgcctcaa ctggcaaacc aaattgctgc
    17401 cggcgaggtg gtggaacgcc ctgcgtctgt ggtaaaggag ctagtggaaa acagtttaga
    17461 tgccggagcc aatactattc aaatcgacat tgaaaaaggc ggctctcagc ttatccgcat
    17521 tcgagataac ggttgtggta tcagcaagca agatttaccg ctggcacttg ctcgccacgc
    17581 tacgagcaaa atcagcagct tggaagattt agaagccatt ttaagtttag gctttcgggg
    17641 cgaagcattg gcaagtatca gctcggtttc acgtttaaca ctgacctctc gtaccgcaga
    17701 gcaaaccgaa gcatggcaag cctatgcaca agggcgggaa atggcggtgg aaattcagcc
    17761 tgcctcacac ccgattggca caaccattga agtagcaaat ctgtttttta acacaccggc
    17821 acggcgtaaa tttctacgca ccgataaaac cgaatttgcc catattgacg aggtggttcg
    17881 ccgcattgcc cttgccaagc cgaatatcag tttcagctta agccataatg gtaaaatcgt
    17941 ccgccaatat cgcaaagtgc aagacaattc ggtagagcag caacaaaaac gggttgcagc
    18001 catttgcggt gatgagttta ttcaacattc aacttatatt gactggcaac acggggatct
    18061 gcacctgcac ggctgggttg gctcaccggc tcttgcccgt ctgcaaaacg acctttgcta
    18121 cagctatgtg aacgggcgaa tgatgcggga taaaaccatc aatcacgcca ttcgccaagc
    18181 ctacggcgac agcattgcaa gtggttacta tccggctttt gtgatctttt tggatttaga
    18241 tccgacaatg gttgatgtaa acgttcaccc ggctaaacac gaggtgcgct ttcatcaagg
    18301 aagactggta cacgacttta ttttgcaagg cgtactcaac agcctgcaac aaacccaacc
    18361 tacgcttgaa ctgcgaaatg aagtgaacga gccgttaccg agctatattc aagacactaa
    18421 ccgccaagct gcggggcaaa atatttttgt gtcgcaaacc gctccacaag cggccgaatt
    18481 tacgcaaaaa aatgcaagtc gatcaagcta tacgcctaaa tttgaacgaa gcaacagtgt
    18541 gagttcgtcc gctcaaaaat ggtataagga attggttggt ggcgatttgc accaaacaac
    18601 gccaactatc aaaacgcaaa gcacgcttgt tgagccaaaa acagaacccc aaactgaaca
    18661 taaaacagaa gccgtttcgc aaaaaattac gcaaattgca ccgcttgcaa gccaccattc
    18721 acaagcctta gcgattgtaa aaaaccaagc ggtgttaatt aaagaagagg aaaattttta
    18781 cctgcttcca ctggcaacat tagccgagct taaactcaag ctacaactgg aaaaagggca
    18841 atctcaagcg ttgttgatcc cactgaatct cagtttagat caacaacaaa ccgaacgctg
    18901 gcaacaaacc aaagaagaac taactgagct tggcttttcg atcagcgaaa aacagtggca
    18961 agcccaaaca cggctcacag tgctttccgt accacaggct gtcagagaac aaaacctgca
    19021 acagctttta tttgctctgt tcaaccaaac acaagcggtc aatttagccg aattttttgc
    19081 aaaaaaatgc gaaaaaccca ccgcttgtac gctaagtgac gtgattgctc tactctcaga
    19141 aattgagctt tatgccaatg ggaaaaaaga gctggaggga ataaggaagg aagtggattt
    19201 ttccaagttt ttatagtcta aagggcaata ccctttagcc aaataaatga gagtggctgc
    19261 caattcgcag cagctctagc ttatcatctt ccacttttcg atagataaga accaaatcag
    19321 gttggatatg gcaatcccta aaacctttcc attcgccggt taaagcgtga tcgcagtatt
    19381 tctcaggtaa tggcttgtca ttaatcagaa aatacaacgc ctcaattaat gaagaggata
    19441 aagactcaac cgcacatttt ttatagtcac gtttaaaagc attactatac tcaatctctc
    19501 gcattgagtt gctccattaa atccgcaata ctatttgctg aatgtagctt ttcctcgcca
    19561 ttcttaacag cccttaatac ttctgctgtc tcaaaattag gctgataatc aaactgaaaa
    19621 cgtttttctg ttgcgatttt cgctaatgtc attcgcatca catcagagac agtcaagccg
    19681 ataccggcta acacctcact tgcttgctct ttaatttcag ggctgattct tacgcttact
    19741 aatgcactat ttgccatcaa aaactccttt tgtatatcaa atgatataca a
//
LOCUS       DANLUT010000021        19733 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLUT010000021 DANLUT010000000
VERSION     DANLUT010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19733
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            15..2741
                     /gene="malT"
                     /locus_tag="PXB38_000707"
     CDS             15..2741
                     /gene="malT"
                     /locus_tag="PXB38_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL5353060.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSINESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            complement(2855..4912)
                     /locus_tag="PXB38_000708"
     CDS             complement(2855..4912)
                     /locus_tag="PXB38_000708"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL5353061.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDNLEKRLYQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTLTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(4987..5877)
                     /gene="malG"
                     /locus_tag="PXB38_000709"
     CDS             complement(4987..5877)
                     /gene="malG"
                     /locus_tag="PXB38_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL5353062.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTLPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            complement(5930..7468)
                     /gene="malF"
                     /locus_tag="PXB38_000710"
     CDS             complement(5930..7468)
                     /gene="malF"
                     /locus_tag="PXB38_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL5353063.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            complement(7587..8777)
                     /gene="malE"
                     /locus_tag="PXB38_000711"
     CDS             complement(7587..8777)
                     /gene="malE"
                     /locus_tag="PXB38_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL5353064.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            9135..10253
                     /gene="malK"
                     /locus_tag="PXB38_000712"
     CDS             9135..10253
                     /gene="malK"
                     /locus_tag="PXB38_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL5353065.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
     gene            10351..11640
                     /locus_tag="PXB38_000713"
     CDS             10351..11640
                     /locus_tag="PXB38_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL5353066.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
     gene            11722..12618
                     /gene="malM"
                     /locus_tag="PXB38_000714"
     CDS             11722..12618
                     /gene="malM"
                     /locus_tag="PXB38_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL5353067.1"
                     /translation="MKKTLLSTAIFFAHLLVVFPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(12778..14646)
                     /locus_tag="PXB38_000715"
     CDS             complement(12778..14646)
                     /locus_tag="PXB38_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL5353068.1"
                     /translation="MSGLVSPELIKTVVLLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(14677..17214)
                     /locus_tag="PXB38_000716"
     CDS             complement(14677..17214)
                     /locus_tag="PXB38_000716"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5353069.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQININIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQENSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYLAQKHH"
     gene            17475..18692
                     /gene="fabB"
                     /locus_tag="PXB38_000717"
     CDS             17475..18692
                     /gene="fabB"
                     /locus_tag="PXB38_000717"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL5353070.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDMVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            18744..18956
                     /locus_tag="PXB38_000718"
     CDS             18744..18956
                     /locus_tag="PXB38_000718"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353071.1"
                     /translation="MNFKISSLLFVILSLFLTACSTMIKPLDSVYWRGKDVSEFFARK
                     RLPDTAVQCVKDNELSYVYGYSTSFV"
     gene            18925..19635
                     /locus_tag="PXB38_000719"
                     /pseudo
     CDS             18925..19635
                     /locus_tag="PXB38_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
BASE COUNT         6101 a         3726 c         4003 g         5903 t
ORIGIN      
        1 aaattgaatt tattatgtta ataccatcaa aacttgtttg ttcttttcga ttacaaaaca
       61 gcattcctcg aaaacgttta attcaagaat tagacaaatc ttgcagttat ccggtcgtat
      121 tgataaatgc accggcaggt tatggcaaaa ccactctggt ttcccaatgg attgaaaata
      181 aaaagaatat cggctggtat gcgttagatg aaggcgataa taattcagat cgttttgcca
      241 cttattttag tgcggcattg cattcagcaa tcaatgaaga aatagacgta ttgttagagg
      301 aaaatcgtaa agctaattta ttagctttat ttaatcaatt attgattaaa gccgcggcat
      361 tttcagagca tttttatctt gctattgatg attatcatat tattgaaaat gatgaaattc
      421 acgaagcatt aaaatattgg attaaacatc aaccgtctaa tatgacgctt atcttgattt
      481 ctcgatcaat tcccccgtta agtattgcca gtttaagagt gcaagaacaa ttattggaaa
      541 ttgatattaa ccagttaatg tttgatcacc aagaaagtac cgcttttttt caagcaagat
      601 taggttcgga gttaaatcag caagatgtta tcgcactgtg taacgaagtt gaagggtggc
      661 ccacagccct tcagctaatt agcctttttg caaaaaataa atcacacacg ctacaagtac
      721 cactgcaaga tattgccaaa cgtttagcca aatcaaacca ttttcatatt aacgaatatt
      781 tagccgatga agtgcttaat aaagtcgatg aagagactcg tttgtttatt ttgcgttgtt
      841 cggttttgca ttcaataaat gagtctttag tgcaggctgt tacaggggag caaaacagtc
      901 gcaccaaatt agagtctctc gaaaagcaag gtttgttttt acaacaaatg gcaaacagta
      961 agtggcagag tagtgatgat agctggtgga aattccatcc gctttttgct tcctttttaa
     1021 atttatgttg ccaaaatgag ttatatgctg aattaccgca actgcatcaa aaggcggcga
     1081 atgcgtggtt acaattaggc tatgttacag aagccttaca tcacgcaatg cagttatcgg
     1141 ataccggatt actactcaat attttgagca aacacgcttg gacggtgttt catcaaggag
     1201 aactcaaatt attggaagag agcttaaatt gcttagatta cgcccattta accgaacata
     1261 ctaatttggt gttactcaaa gcctggttgg tacaaagcca gcaccgccat attgaagtag
     1321 gtggtatttt agcggatttt tctcgtgcat taactgaaaa taaaattgaa ttgagcaaaa
     1381 ctgccaatgc ggaatttaat gtgctacggg cacaagttgc tatcaattcc ggtgatgaga
     1441 ataccgcact tcaattagcg tctgaagcgt taaacgatct ttcagaaaat gcctattatg
     1501 ctcatattgt tgcaacgtct attattggcg aagctcatca ttgccacggc aatctggcag
     1561 aagcattagc aatgttgcaa aaagcagagc gtatggcacg tcagcatcat acttaccaca
     1621 atattttgtg gtcacagctt caacaatctg aaattttgct tgcccaaggg ttttcacaag
     1681 cagcctatga aatgttagat aaagcaagcg agtttgtgaa agaaaaccat ctacaaaaag
     1741 tgccgatgta tgaatttttg ctacgttcta aaggcaagat tttatgggaa tggtataact
     1801 tagataaagc tgaatcaatg gcagttgccg gaatgaatgc cttatctaaa tttgaagata
     1861 agttacaatg cttaacttta ctcacgaaga tctcgttggc tcgaggcaat ttggataaca
     1921 ctgcccgatt attaggcgag gtcgaacaat tagaacattc tcattcttat caccacgatt
     1981 ggattgccaa cgccgatcag gtacgtatat tttattggca gatgaccaat gacgtttctg
     2041 cggtgaggaa ctggttaatt caaaacccct caccggtttc agataaaaat cattttaccc
     2101 aagtgcaatg gcgaaatatt gcacggtctc gaatcttgct tgaggaatat cacgaggcga
     2161 aagccatttt agataattta attgaaacgg ctgaaaaatt ttctctgatt agcgatttaa
     2221 atcgcgcatt aattgttcgt aaccggcttt attttttaca aggcgagaaa gaattggctc
     2281 agcaagattt aattcaggca ctaaaactca cccgccaaac gaattttatc agtgcgtttg
     2341 tgattgaagg ggatgtaatg gcacagcaga tccgccattt attgcaactt aatgtgctag
     2401 atgaactggt attgcacaaa gcacagttta ttttacgcaa catcaatcaa ttttatcgcc
     2461 aaaaatttgc ccattttgat gaaaactttg tgaatcaatt attgaaaaat ccgaaagtgc
     2521 cggaactctt aaaaattagt ccgctcactc agcgggaatg gcaagtattg ggtttgattt
     2581 actccggata tagcaatgaa caaatttcag atgaattgca agtggctgca accacgatta
     2641 aaacccatat ccgaaatctt tatcagaaaa tcggtgtgac gaatcgtaac gaagcaatca
     2701 gctatacgaa agaactgctg atgttgatgg ggtatcattg atcacaagct catggggaac
     2761 aagcggtcta tttttagtaa ttttttgcaa cttgtttccc cgaaccggct tcaagttttc
     2821 cccagaagag agaaaacttg aagccaaagt agatttaatt tccggcccaa accaccatca
     2881 ctttatcttc attcaacaca cgcttaaatg caaagtagct atcatttttg atgagttgat
     2941 ggacacctgc gccaatagcc ggatggcgtt ggcggaattg tgtcaatttt tgccaatgtt
     3001 gatgcaatgc ctgtttctga ggatcttgct gcaactcttg ccaattcata tccgaccggg
     3061 tgccttgtat caggtctgaa ccggtcgcac caaatgtccg cccactttca tcaccataat
     3121 agatttgcac tgcaccgggt gaaagcaaca gcaaatttgc ggcggttttg tgtttttcga
     3181 tattttgttc actatccgaa tggaaaaata atcgagtatc gtgtgaagat aaatagctca
     3241 acacattgaa gtcgcttaat ttgcgattca tttcggcata aatcggctca atatgggcaa
     3301 agcaatttaa cccttgttta gcctgatctt gaaaatcgaa attgatcatt gcatcaaaac
     3361 cgttttgata atagtcactt ttgaacacgc cgtgtcccca cgcttctcct gtcatccaaa
     3421 agcgatcgtt aaaaccggcg ttcggattgg ctttttgcca ttcgtttaag gcttgttgtg
     3481 ccgattgttt taataccagc cacgtggatt tttcaacgtg tttggcggta tcaacccgaa
     3541 aaccgtcaat gccatatttt ctgacccaat cggataacca accaattaaa taatcacgca
     3601 ctttggcgtt tggtaatgtt ttggcattgg tatttttatt tgcaaaaaat tcaggtaatt
     3661 tgaccgcttg ttcgctctcg gtttttagat caggaagggc agcgagcgac atttttaaat
     3721 catcaaattt agggctgtcg taatcggcaa tatcagctct aacccattct tttccccacc
     3781 aattttgcca agcctgatta tcgttaaagc gaatgaaatc attgaaactg tgccaatttt
     3841 gtcctgattt cggcttccag tgtgtccatt tttcgcctaa tgtgcggcta atttcgtccg
     3901 gtgttaagta aaatccgcca aagttaaact cctgcatatc ggcaagcgtc gcgtagccgg
     3961 tatggttcat caccacatca aatagcaccc gaataccacg ctggtgggct tgttgaacaa
     4021 agcgacttaa atcgtcttca gtacccatat tggcatctaa tttcgtccaa tctaaatgat
     4081 agtaaccgtg atagccataa tgcggaaaat cccccttatc accgccgcca acccagccgt
     4141 gcatttgttc taacggagag ctaatccaca atacgtttac cccaagttgt tgtaggtaat
     4201 cgagcttttc ggttaatcct tttaaatcac caccgtgaaa ggtgccgatt tcttgcattc
     4261 cgtctttttg gcggtggtag ctgtggtcat tggtcggatc gccgttataa aagcggtcgg
     4321 tcagcacaaa atagacggtg gcatttttcc aatcaaacgt tgccgtattt tcggtattgc
     4381 ttttttccag caaaatcaga ccgcttgcgt tttcattggg cattaaggtg actttgccgt
     4441 ttttaacgat agcggtgttg cctgaataaa aatcgctaac cgattcgcct tcggcaaaag
     4501 tggaagaaac atcaatttca atcggttttt tatcccaatt cgggcaactt tgaaacatcg
     4561 cttcattgtg ctgtagctgc tgttctacgc tgattgtgag tgtcggagtg ccgcttcgca
     4621 gatcaatttg tgccagatag ttgccttgac gaaacaaccg cagttgtgga gcttcattta
     4681 tacaagggac taacgcaacc gattgattta attttatcgc ttgttggggt tgataacatt
     4741 gttcgccaaa tttgaaccta agcggatagc tccctttttc caattgaact tgagattgat
     4801 acaaccgttt ttcgagatta tcgttaaaat cagaaaaatg agaatgttgc caagattggg
     4861 caaaaaggct tgaggtatag aataagcaga gataaggtaa cgcatttttc atagacagcc
     4921 ctaataaaga ttgacgaccg cagtatcagc tcgacaagcg gtcgttttta gagaattttt
     4981 tgcaaactag cctttcacgc cgccggcagt taaaccaccg attaaccagc gttgtgccaa
     5041 taagaagacc agcgtaatcg gaattgcgga taagaccgcc gctgctgcga agtcacccca
     5101 taaatagttt tgcggataga ggtattgttg cataccaacg gctagggtgt agctgtttac
     5161 atcacgcaat aggagtgagg caaccggtac ttcggtaatg gcggcaataa atgaaagaat
     5221 gaaaactacc gccaaaatcg gcactgaaag cggtaataag attaatcgga acgcttgcca
     5281 cggggttgca ccatcaaggg aagcggcttc ttccaatgaa ccatcaatcg tttcaaagta
     5341 gcctttgatt gtccaaacgt gtaaggcaat tccgcctaag taggcaaaaa taacaccacc
     5401 gtgtgtgttt aaaccaagaa acggtacata ctgcccaaga cgatcaaaca acgcatataa
     5461 ggcaactaag gaaagcactg ccgggaacat ttggaaaatc agcatacctt gtagaatggt
     5521 ttttttgcct ttaaatttca ttcgggcaaa tgcataagca caggtcgtag ataaggttac
     5581 aatgccgata gaggtaattg ttgccacttt gatggagttc cataaccagc gtagcaccgg
     5641 gaatggcggc agtgtgactg taccatcggc gtgtgtaaca tcaaaaccaa gagcggcttg
     5701 ccaatgttcc cacgaaattt ggcttggaat aatatcaccg atagccagat ttcccggtcg
     5761 taacgaaatg ccaatcacca ttaataaagg gaaaataatt aaggcaagga aacagattaa
     5821 gatgaaatgg gttgcccata cccgataacg cacagattta gattgaacaa ttgccatata
     5881 taactcctaa agttagtttg gggtcgggat tgttaaatcc ctcccgcttt tataattcca
     5941 ttttggttgc tttgatattt aagagtgcca agccaccgac taataagaaa ataatggttg
     6001 cgatggcggc tgctaagccg aaatcttgcg taccacttcc ttcaaaggca atacgatagg
     6061 tgtagctgac taataaatcg gtataaccgg ctggagtggt tgttccaatc atatccgggc
     6121 gaccgtttgt taatagttga attaatacaa agttattaaa gttaaatgca aacgaagcaa
     6181 tcattaacgg agtaagtggt tttaacagta atgggaaagt gattttactg aagttttgcc
     6241 aagtggaagc accgtccatt gcggaggctt catataaatc agccggaata gctttgagta
     6301 accccataca taaaatcatc atataaggat aacctaacca cgtattgaca attaagatca
     6361 tcactttggc aaggagcgga tcgttaaacc attcagggct gatgccgaat agttggttta
     6421 aaatcatatt gatctcacca aaactttggt taaatagtcc tttaaaaatc agaatcgaaa
     6481 taaatgatgg tacggcataa ggtaaaatca ataagacacg atagactgct ttacctttta
     6541 atgcctccca ttgtaccaaa caggcaagaa ccataccgag aataacggta aagacaacgg
     6601 ttaataaaga gaagatcacc gtccaaataa atatttggac aaaaggtttt tgaatacctt
     6661 catcggtaaa aattttaatg aagttattaa agcctgatgt gacagtataa cctggttcaa
     6721 gtgtttcgct ttgccaatga ccgttttcat caatcgattg gaagaaaccg gtttcgtcat
     6781 ttgcttgata acgtttgcca gtctcattat tgagtaatat tttattttct tcatcaaatt
     6841 gatagcgtgg tttttgctcg gagaattgac gtaatgagct cattgtcagt tcattattat
     6901 tcggtaaaac cactttcatt gattgaagtg cggcccgatt ttgcgtaatc actttaaggg
     6961 gagcgacttc gccggttggt ctgttttgct cggttacaac cacattcgtt ccggtagcca
     7021 atgaaatcgg ctctgacaca aaagtttgct ctgtcgtcgg attggttaat gcaatttgat
     7081 atttattatc tgcttgcgga taaagggtga attgatattt atctccggca aaatagcgtt
     7141 gttcagttaa gacggatacc gctcgttcaa aggataattg attagaacca ctatagttgg
     7201 taaacgcaat tgcaatagtc gcaaccagcg gaaacaaaat aaaaattgcc attccggtaa
     7261 tgccagggta aacataccgc caagcatagg tatttttatt ggtaaaaata tagacaccgg
     7321 aagttagaat aatcagcgtt aaaatagcaa aaagatattc accttgtgag tacattaaga
     7381 caacaagata gaagtcaagg agcaagacta atccggctaa gagatatttg agccaatgag
     7441 tggatttgga ttgagtttga gttagcataa cagcacctcg aatttttact gcattttgtt
     7501 acggtacttt tactgtactt ttattgtatt tagggtgaat ctaaaaatag agtgggtcat
     7561 aataacccac tcagaatgat gaagaattat tgttgttttt gaatgcgtga atgtgcatca
     7621 tctaatgctt ctttcaccga ttgacgaccg gtcactgcat tattgatagc agatttttcg
     7681 gcataccaga aagaagacat ttgcggaata tttggcataa tttcaccgtt tttcgcattt
     7741 gccatcgttg cagcaatacg aggatcagcc gctaatttct cttggtaaga ttttaacgcc
     7801 accgcaccta aaggtttatc tttattgact gcatctaaac cgtcgtcggt gagtaaataa
     7861 ttctctaaga attctttggc taaatcttta tttgggcttg agctgtttac accggcgctt
     7921 aacaccccta cgaatggttt agaagcttga ccgtttaatg ttgggagtaa agttacacca
     7981 tatttaatac cgcttttatc aatattgccc caagaccaag gaccattgat ggttaaggca
     8041 ctttgtcctt tattaaagga ggcttcggca acggcatagt ccatatccgc actaatatgt
     8101 ttatttttca ccatatcgac tacaaattgt agtgctttta ctgccccttc attgttcaca
     8161 ccaatatctt ttggatcgta tttgccgtta gcaaatttga atgcataagc tccgtttgaa
     8221 gccgcaatcg gccacgtgaa atagggctcg gataagttcc acataatggc atttttgccc
     8281 tcttttttga gttttttatc taactcaata atttcttccc aagattttgg tgcttctttc
     8341 actaaatctt tattataaat taatgaaatc gcttcaatcg caaccggata accgataatt
     8401 ttgccgttgt aagtttcagc atcccaagca aaatcgacaa atttatcttt aaattctttg
     8461 cttacattca cttcagccaa taaaccggat tgtgcataac caccaaagcg gtcgtgagcc
     8521 cagaacataa tatccggacc gtcaccagtt gaggcaacct gtgcaaattt ttcttcaagt
     8581 ctatccgggt gttcaactaa aacttgaaca ccggtatctt tttcaaattt cttaccgact
     8641 tcggcaagcc cattgtaccc tttatcaccg ttaatccaga taacgagttt accttccgtc
     8701 atttttgcca ttactgttcc tgaaagaact aaggtagcaa gagtagctaa ggtgaatttg
     8761 acacatttgt ttttcataaa aaactccttg aagttaaata aaagaaacgg atatgaaaca
     8821 acccatttat taaattatgg caaattatgg gctatacaat ctatttgaga tcaccctttg
     8881 ctctacgccc cccaagctaa aagtatgatc taagtaacat tttttatcat tttgtgatct
     8941 gcttcacaaa aataggcatt aaaaatgaga ggttgatcac aaaatttatt taatttttct
     9001 gaattggcgt tttttaaata attatggctc taaccctaaa aaaaagtatt ttaggatgat
     9061 ttcttcttta gataaaaagg cgactattca gcctaaataa aaccaataag caaaagcaga
     9121 aaagaggttt agttatggcg aatgtatcat tacgtaacgt gggaaaatcg tatggtgatg
     9181 ttcatatctc taaggatatt aatttagaaa ttaacgaagg agaattcgtt gttttcgttg
     9241 gaccgtcagg ttgtggcaaa tctacgctat tacgaatgat agcaggtttg gaagatatta
     9301 cgacaggaga actctatatc ggtggaaaac tgatgaatga agtagagcct tcaaaacgtg
     9361 gtatcggtat ggtgttccaa tcctatgctc tctatccaca tttagacgtt gccgaaaata
     9421 tgtcttttgg cttaaagctg gcaggtgtaa gtaaagcaga gcgggatcaa cgagttaacc
     9481 aagttgccga aatcttacag cttgcccatt tattagatcg aaaacctaaa gcactttccg
     9541 gcggacaacg ccaacgggtg gctattggta gaacactggt ttcccaaccg gaagtatttt
     9601 tactcgatga accactttcc aaccttgatg ccgcattgcg tgtacaaatg cgggtagaaa
     9661 tttccaaatt acataaaaaa ctaaaccgca caatgattta tgttacgcac gatcaagttg
     9721 aagcaatgac attagcggac aaaatcgtgg tattaaatgc cggcggtatt gctcaagtag
     9781 gtaaaccgtt agaactttat cattacccgg caaaccgctt tgtagcaggg tttatcggct
     9841 cgcctaaaat gaacttttta ccggtaaaag tgattgcggt agagccggaa cgggtaaaaa
     9901 ttgagttacc tgatgcgaat catcataatt tttggattcc ggtttccggc gaaggggtga
     9961 atgtgggaga taacttatct ttaggtatcc gcccggaaca tttagttcct tcggatcaaa
    10021 cccaagtgac cttacacggt attgtgcaag ttgtggaatt gctcggaaat gaaacacaaa
    10081 tccaccttga aatccctgaa atcaaacaac caaccttaat ttatcgtcaa aacgatgtgg
    10141 tattagttaa tgaaggcgac gatctgaata tcggtatatt gccggaacgc tgccatttat
    10201 ttaaggaaga cggtacagct tgcaaacgtt tgtttgttga aaaaggggta taacaatttc
    10261 agtttattac tgattttaga gggtattttc aatcttctaa tcaattaata attaacctaa
    10321 gtaaaatcaa atcttaagag aggttctatt atgaaaaaaa cagtcctagc agttgcaatc
    10381 agtggtgcaa tgttcgcagc cagtgcatca gcggttgatt tccacggata tgcacgttca
    10441 ggtatcggtt ggacatcggg ggggggggag caatccgcat tcacggtaaa tggtggtggt
    10501 tcaaaatacc gtttaggtaa cgaatctgat acctatgcag aattgaaatt aggtcaggaa
    10561 ttattcaaaa gtggtgagaa atctatctac tttgatacaa accttgctta cggcggtacg
    10621 cttcacaata atgattggac accaacaagt ccagcactac gtgaattaaa tgtacagttc
    10681 aaaaactttg cagatagttt accaggtgcc accttatggg ctggtaaacg tttttaccaa
    10741 cgccatgatg tacatatgaa tgacttctat tactgggata tttcaggtcc gggtgcaggg
    10801 gttgaaaata ttgatttagg cttcggaaaa ctctctttag cggttactcg tgatacagag
    10861 cgtggagggg cgaatacttt tggatatact acagtttata aattagatcc tagcacaggt
    10921 aaaattaaat tagataagca gcgtaataaa gccgatgttt acaacgatat ttttgatgtt
    10981 cggttagccg gtattgagct ttggaaagat ggttcgttag agttaggctt tgattacggt
    11041 aatgcacatg ctaagaaagg tgcagccctt gaaaaaggag caaccaaaaa cggttatatg
    11101 gtaacagcgg aatacactca aggtaacttc tttggtggtt tcaataaatt taccgcacaa
    11161 tatgcaaccg attctatgac ctcttggaat aacggtcacg cacagggttc aaaagcagat
    11221 aataaaggca atatgcttcg tttaatcaac caaggggtag tgcaagcgag tgataaagtt
    11281 gaagtaatgt atgccttaat ctacgaaaaa acaaaactag ataataaaca aggtaaaact
    11341 tggtattctg ccggtatccg cccaatgtac aaatggaatg atacaatgag tacattatta
    11401 gaagtaggtt atgaccgtat taaagatcaa gccacaggca agaaaaacga cttagtgaaa
    11461 tacaccgttg cacaacaatg gcaagcaggt aacagcattt gggctcgccc tgcaatccgt
    11521 gtgtttggta cttatgcacg ttggaatgat aaattcaaca cgaaagctcg taccgatgcc
    11581 ggctataaag ccaaagacgg cgagtttatc accggtgttc aatttgaagc ttggtggtaa
    11641 tcatcaaacc tttgtgtggg taggattacc tacccactat ttcagcactt tatcctagtt
    11701 tcacgatttt tagaggttaa tatgaaaaaa acgcttcttt cgacagcaat attcttcgcc
    11761 catcttttgg tggtgtttcc gagtatagca aatggctcgg caggtaagtc tattcatatt
    11821 aactcggctg aattagctca aattcaatgg caagatgtgc cattttcaca aaccgtaaaa
    11881 acagatctaa gcgagcaaca caaacaagca tttaccacag cgtttgccgg tattgccagc
    11941 ccggttgcag cttatcgtat tccggcaaat caaggcacat tggaaattga aatcgaaagc
    12001 ccggtgatgg acaaaaatgt ttttgtaccc acggcagtcg tgttggatag tcaatttaat
    12061 gtggcatcaa cttacccctc ttctgagttt aaattattgg aagagcgagg actcaaaggt
    12121 agccgtttag gggcagaact taatttaacg ccggcaatga accaagatta tatttacttg
    12181 ctcatttata ccacgcagca agatttagcc aaaaccacga tgatgccgca tccggcaaaa
    12241 acctatgcaa aagcaaccgg taaacaacca ccagcaatta acgatattga agtagcacac
    12301 agtttaaaag ggcaaattca catcaacgtt accggctcga acggcactaa atttattgga
    12361 ttaccgactg aaattttcag ctcaaacaaa gcagcaacgc cggcagctaa aacggctata
    12421 ccgttgccga taaaagaaaa tccagttgca gtaaaaacag cagtagataa agatacggaa
    12481 gcctatttta atcaggcggt aatgaaagcg attaaagcaa aagatattaa taaagcgatg
    12541 aatttggtta acgaggcaga aaaattaggg ctgacttctc cacgccaaat tttcttaaaa
    12601 aatgtaagtt caaattgatt tattgttttt ttcatagata ttctccttgt catcgtgcga
    12661 tggtttatta ccattaacac cctatcagat tatgccgata gggtgctttt ttacgagtga
    12721 ttatgcgata tgtataggaa ggcttatact tgaataagga ttcaaagtat aaattcttta
    12781 atttttatca gtgatatcca cttttataac ttctactgtc tcaccaagct cttctaaaat
    12841 atcagccgtt tcttcattaa gtgcactacc ttcgtgttgt ggatttaccc aaggtgttgg
    12901 tacccaatat ttgcggataa cttctgcgga gaaaccgtgt aataattcct cattaaagcg
    12961 ttctgcatct aatcggcgaa catagctgat aatttgtttt gcctcttcct cgctagaacc
    13021 taagcgttca atggcggctt ggcttaatgc gagggctgat tcaaaggttt ctcgaatgtg
    13081 ataatcaacg tggtgctttt tgactaaatc aaccgcactt tgtctatcat aggttctcgc
    13141 aaatacaggt actaaggggt attcagattt aatcagctct acgattttct ccgttctttc
    13201 cggattgcct acgccaacaa ttacgcagtt tgcattggcg atgccagatg ccctaagtac
    13261 atctagtctc gctccatcac catagtaaag tttaaaacca aaacgagcag cagcacgaat
    13321 atgatcagta tttgaatcaa taaccgatac acttagtcct ttggctaata aggcttggca
    13381 gactatttgg ttaaagcgtc caaaaccgat gactaataca ttggcttcta aatcttccgg
    13441 taattcaacc cctgtcatat tagtggattc atttttcgct tttttctttc tcactccttg
    13501 cttgattaaa atgagaagtg gggaaagcaa cattgagaca attaccgcag cggttaaggt
    13561 agcgtgagta tctggggtta aaatcccagc ggttgcggcg gctgagaata gcacaaaggc
    13621 aaattcacca ccgtgagcca taatggtagt tcgcacaata gattcattca gtgttaatcg
    13681 ggtgatagag gcagcaatga agattccaag gcctttaccg ataacataaa ctgctacaat
    13741 caccaataac catagccaat tattgaggac gaggctgagg tctaatgaca ttcctacgcc
    13801 cataaagaat aagcctaaaa gtaaaccacg gaagggttca atatcagctt ctagttgatg
    13861 gcggaaagaa gactccgaaa gcattactcc ggcaaggaat gcccccattg ccattgaaag
    13921 cccactgatt tccattaaaa gagcggagcc taataccaca agtaaggcag cggcagtcat
    13981 catttctcgt actttggctt tagaaataac acggaaaata gggttcatca gccattttcc
    14041 actcgcaacc aaaataagaa cggcaactag gctaagacca atagcagacc aattagtact
    14101 ggattcagca tctacttggt taggagcaag aaaggcaacc gaggctaata atggcacaat
    14161 cgctaaatct tcaaatagta aagttgcaac aatacgttgc ccttttggcg tggaacttat
    14221 ccctttatct tccagcactt gcattacaat ggcagtagaa gatagcgtaa aacccatacc
    14281 ggcaataaat gccacttctt tggaaaaacc taataagtaa atgccggcta aggttaataa
    14341 agtaccgcaa atcgcaactt gtaagaaacc tcgcccgaag atggctttac gcatcgccca
    14401 aagcagttcc gggtgcattt ccaaaccaat aataaacaaa aacataacca cgccaagttc
    14461 tgccatatgc acaacagcgg cagggtcttg gaacaatcca atgcccgatg gcccgattaa
    14521 acatcctgcg actaaataac ccaatacgct tcctaaacca aggcgtttaa atagcggtac
    14581 aatagtgacg ctggttgcaa gtaatacgac tgttttaatt aattccggac taactaatcc
    14641 tgacatagaa ttcccacctg tataatataa ataagattaa tgatgttttt gtgctaaata
    14701 atctaaatgc tggcggcttt gaaacggcac aatacataac tcaccgtttg gtgaaataag
    14761 ttgataaaat tgtggatgat taaagcttcc aaatgatgct ggtgtttctg tttttaattg
    14821 tttttcattt tgtaatttat tgattttcct gattttctct tctttattgc cgaaacagtt
    14881 atagtaactt tcgacattat tacgttcatc tacaacatat acattaaaac tattatcgac
    14941 attgtcttca aagaaaaact gtaaaaagcc ttcactggca aattcactaa tttgctgcgg
    15001 aaattctttt ttcttttcat tttcgctttt agcattttgc ttggtttttg caaaagaatt
    15061 taaattttca accgcttgtt gttcatcaat ttgtttaatg ctaaatgttt ttttatgaaa
    15121 aagaaactgc caggtttttc ctgctacttt taaagtgcta aattcattct cttgcagtaa
    15181 acaaccagtc tgaattgtaa tacatttatg aactaaatct gccacaaaat cccgtaactc
    15241 actacgtaga tatttactat agcaaaaaac attaactgat tgaggtgaag aattttcttg
    15301 ataaattcga ttggatacca attttagtgc ttttaaaata gcatcttcac cgtcaaaatg
    15361 ttgagttcga atttcattcc atacatttcg ataaataatg ctcacactac caactaacgt
    15421 tttttgtgcc ttaccaaaat taaacagatc gcttggataa actttttttg gtagttcatc
    15481 gatatgttcg gttggatctt gtactaaatt aagcgctata accaaattgc gaatttcatt
    15541 agggtgatgc atgtcatcat tggtcacttc cggcgcttga attgggaaag ataagcgcaa
    15601 gtcggtgata aattgtcgca atttctcgat atctaaatta gggctaacag tatgtaaatt
    15661 agttgctgcg ttaataatgc cgttaaaata cccccaagca ataagcttaa tcgggctttt
    15721 attataatgg acataacgat tttcagagtc ataacgactt ttaggtgcct gattaactaa
    15781 ataccaaccg ggttgtaacg cagatccaac tttagcttca ataaatgtaa ttgctttttc
    15841 tgctaaattg gacgatattt tatgattaat taaagatatt tttcctggaa gtgcttcaaa
    15901 tacagaataa agttttcgca ttaaaatatc agtatcattt gtcataatgc tcggattaat
    15961 atgaaatttt cgagcaaaat gaattaaatt tcgataactt tgtagtaaat gatcaatcag
    16021 catattctca tgattcatca cttgcttaat tttccaatgt tgacggtttt gaagtaattg
    16081 aatttgtttt tctgaccaag accattggtt aaccagctcg tctaaatcac gacttctcca
    16141 gttgttattt atttctccct caaccgcttt tgcataaaaa cagactcgca agcggtctaa
    16201 tttcacccac tctttgcgtg atcttaagtg ttctgttacc aattcaagca tggctaagta
    16261 gggatcaaag tgatattcca aagcattgtc acttagtagt tttttcttaa attctttgga
    16321 gatgagcttt gttttaggat aagtgtgagc gtagcattcg agcaataaaa ttttaattgc
    16381 cgatttataa gggttattaa ttcctttgta gagctgccat aagcttgcac caaaaaattc
    16441 actggttgaa aggctggaaa aatcgccgaa atcaatccat tccgttaagt caatttcagg
    16501 gttattgtga acattttggt attcattttt atgtaaatgc aaccagagta aacgcttacc
    16561 ggcaagtaaa atagctgaac gataaaattc atctaataga aaaaaatgct gtgctgaacc
    16621 actgtgttca tcggttacgc tactgttata agtttggctc ttaaattgtt ctgggttcat
    16681 taaataaata ttgatgttga tttggaatgt ctttgcccat tcttgcaatt tattaatttt
    16741 aagctccatt aacttatatt gttcaattgt aaaatggttc ggatagcata gccataaatc
    16801 taaatcagaa cagcttgttt gggtaatagt accggtgcta cccatcgaat aaagagcatc
    16861 aaagctggga tgggggccca aatgatcggc agagattgct tcatcaaaac ggtaagaaac
    16921 cagaaattgt ttttgataat cagagagttg aaaatgccaa atcccttgtg gtgcattttc
    16981 aacataagcc ggtaacacag ggtgattaag atgaataagc aatggaatga gagagaaaac
    17041 atgcataaaa tgatgattat tagcattgat agctcgttct attcggtatg cattaagttg
    17101 atcaattcgt gctttagtag agtttaattt ttgggcgaag ctcccctggt tcgccccaat
    17161 ggcagcgcct tctacggctg ttattttgtt ggctgtcagg gttaatgttt tcacgtcagc
    17221 tttccttact aaagtgtgaa ctgtttagca ttttagcgga aaagtgatta ttatgtaata
    17281 gggtaaaaaa tcgggaaatt aaatttcatt ccctattttg caaaaaatgt ctgaaattca
    17341 accgctatct tgatagaaag agttcagacc agtaatgaaa ttgtgtaaaa taatcaagtt
    17401 ttagtagctt atttgagtga acaagtgtaa gctgaatcaa gtatttttca gatcaaaatg
    17461 atgaaggaaa caaaatgaaa agagtcgtta ttacaggatt aggtgtaatt tccagtatcg
    17521 gtaacaacaa agaagaagtg ttggaatcac taaaagcagg taaatcaggc attgaatttg
    17581 tgcctgagtt tgctgaagtg ggtatgcgta gccaagtggc aggtacgatt aaattaaatc
    17641 cggctgagtt aattgaccgt aaaatctatc gttttatggg agatgctgcg gcttacgctt
    17701 atctttcaat gaaagaagca atcgaagact caggcttaac cgaagaacaa gtttcaaacg
    17761 atcgtaccgg tttggtgatc ggagctggta caggctcggc gcacagtcaa cttgtagctt
    17821 gtgatgcagt acgtggccca cgtggtgtga aagccgttgg gccttacgca gtaaccaaaa
    17881 caatggcatc aagtgtgtca gcatgcttgg caacacctta taaaattcgt ggtgtaaact
    17941 attcaatcag ctcagcttgt gcgacttcag cacactgtat tggacacgcg atggagttaa
    18001 tccaattagg taaacaagat atggtgtttg caggtggtgc agaagaactt tcttgggaat
    18061 gtgcaaccga gtttgatgca atgggtgctg tttcaactaa atataatgaa acaccaacaa
    18121 aagctagccg tgcttatgat gctaatcgtg acggttttgt gattgccggt ggtggtgcag
    18181 tggttgtggt ggaagagtta gaacacgctc ttgctcgtgg tgccaaaatc tatgctgaaa
    18241 ttgtgggcta tggggcaacc tcagacggtt acgatatggt cgcgccaagt ggtgaaggtg
    18301 ctgagcgttg tatgagacag gcgatggcaa ctgtaaatgg tgaaatcgag tatattaacg
    18361 tacacggcac ttctactcca gtgggtgatg taaaagagtt aggggcgatc cgtaatgtct
    18421 ttggtgataa aacgccagca atttcatcaa ccaaatcaat gaccggacac tcattaggtg
    18481 cagcaggtgc gcacgaggca atttattcat tattaatgtt agataataat tttattgcac
    18541 caagcattaa tattgaaacc cttgatgaac aagcacaagg tatgaatatt gtgactgaac
    18601 gccaagacaa agcattaaca accgtgatgt caaacagctt cggctttggt ggtactaatg
    18661 cgtgtttagt gttccaacgc tattctaagt aacataaaaa gagcaagtga aagcttgctc
    18721 ttttttcttt tgaggtaatt attatgaatt tcaaaataag ttctttgcta tttgttattt
    18781 tgtcattatt tttgaccgct tgttctacaa tgattaagcc actagatagt gtttattggc
    18841 gtggtaaaga tgtatctgaa ttttttgcac gtaaacgttt acctgataca gcggttcaat
    18901 gcgtaaaaga taatgaatta agctatgttt atggttattc aactagcttt gtataatttg
    18961 caaacttatg aagttggtcg taatgcaacc actatattta tgacaacaga taaggtttat
    19021 acaggtggat cgacttggac atatcttttt gctgacgctg ataataaaat cacttctgtt
    19081 cgtgaaatga atggttttgg tgatgtcgaa aaagagttta aatgtggtga atataaagaa
    19141 gcggtaacca ttgccagtaa agaggactta gcaaagcgta aaacacagcc tcgtttatgg
    19201 tcatcaattt atatgtcacc tgaacaaaat atgatgtggg tgactgataa tccgtctaaa
    19261 aatttagaaa atgcgaagca agatgcgttt aaacagtgtg aaaagaacgg tggtcgtaat
    19321 tgccaaatga tcttatcgtt tagtaatatg tgccttgctt ttgcacaagg ttataaagat
    19381 ggtcaaggct tcgaggattt tgggtatggt atcgttagta gtcttgctga agaaaatgca
    19441 ttagagaatt gtaatcaaaa aggtggttaa agttgtcttc tttctgcccc tgccgtatgt
    19501 gctattccct gtgatatatt gtcgaacaac aaatgtatgt acgatcagcc tcaaattatt
    19561 attccaggta agaataataa ccaaccgatt aatccaccag ctaatggcaa cggtgagcat
    19621 tggttgagta attaaatcat tttagtaaaa agtgcggaaa cgcacttttt tattgcctgc
    19681 aagcggtcat ttttagtgaa aactttgcta aaaatcttgg taaataaaaa ttt
//
LOCUS       DANLUT010000022        19413 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLUT010000022 DANLUT010000000
VERSION     DANLUT010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19413
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            117..764
                     /locus_tag="PXB38_000720"
     CDS             117..764
                     /locus_tag="PXB38_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL5353072.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(897..2273)
                     /gene="trkA"
                     /locus_tag="PXB38_000721"
     CDS             complement(897..2273)
                     /gene="trkA"
                     /locus_tag="PXB38_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL5353073.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARICSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(2273..3604)
                     /gene="rsmB"
                     /locus_tag="PXB38_000722"
     CDS             complement(2273..3604)
                     /gene="rsmB"
                     /locus_tag="PXB38_000722"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL5353074.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(3656..4081)
                     /locus_tag="PXB38_000723"
     CDS             complement(3656..4081)
                     /locus_tag="PXB38_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5353075.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(4174..6822)
                     /locus_tag="PXB38_000724"
     CDS             complement(4174..6822)
                     /locus_tag="PXB38_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL5353076.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(7024..7986)
                     /locus_tag="PXB38_000725"
     CDS             complement(7024..7986)
                     /locus_tag="PXB38_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL5353077.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(8170..10017)
                     /gene="selB"
                     /locus_tag="PXB38_000726"
     CDS             complement(8170..10017)
                     /gene="selB"
                     /locus_tag="PXB38_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL5353078.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(10027..10323)
                     /locus_tag="PXB38_000727"
     CDS             complement(10027..10323)
                     /locus_tag="PXB38_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5353079.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(10320..10496)
                     /locus_tag="PXB38_000728"
     CDS             complement(10320..10496)
                     /locus_tag="PXB38_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353080.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(10565..11197)
                     /gene="pdxH"
                     /locus_tag="PXB38_000729"
     CDS             complement(10565..11197)
                     /gene="pdxH"
                     /locus_tag="PXB38_000729"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL5353081.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSESINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGREIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(11255..12637)
                     /locus_tag="PXB38_000730"
     CDS             complement(11255..12637)
                     /locus_tag="PXB38_000730"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL5353082.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIEPSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVVE
                     FDKLIEMLEY"
     gene            12705..12799
                     /locus_tag="PXB38_000731"
     tRNA            12705..12799
                     /locus_tag="PXB38_000731"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12739..12741,aa:Sec,seq:tca)
     gene            13006..13695
                     /locus_tag="PXB38_000732"
     CDS             13006..13695
                     /locus_tag="PXB38_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL5353083.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EVPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            13705..14607
                     /locus_tag="PXB38_000733"
     CDS             13705..14607
                     /locus_tag="PXB38_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL5353084.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCILENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            14632..15510
                     /gene="nanA"
                     /locus_tag="PXB38_000734"
     CDS             14632..15510
                     /gene="nanA"
                     /locus_tag="PXB38_000734"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL5353085.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGVIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(15571..15776)
                     /locus_tag="PXB38_000735"
                     /pseudo
     CDS             complement(15571..15776)
                     /locus_tag="PXB38_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(15734..16379)
                     /locus_tag="PXB38_000736"
                     /pseudo
     CDS             complement(15734..16379)
                     /locus_tag="PXB38_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(16484..18079)
                     /locus_tag="PXB38_000737"
     CDS             complement(16484..18079)
                     /locus_tag="PXB38_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5353086.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            18228..18668
                     /gene="mioC"
                     /locus_tag="PXB38_000738"
     CDS             18228..18668
                     /gene="mioC"
                     /locus_tag="PXB38_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL5353087.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKANLIVVTSTHGAGELPENIQPLFDDLANSTADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFIEQL"
     gene            18680..18847
                     /locus_tag="PXB38_000739"
     CDS             18680..18847
                     /locus_tag="PXB38_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL5353088.1"
                     /translation="MKKISANKAKWIKIAIILIYMFSPVDILPEAILGPLGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(18936..19409)
                     /gene="asnC"
                     /locus_tag="PXB38_000740"
     CDS             complement(18936..19409)
                     /gene="asnC"
                     /locus_tag="PXB38_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL5353089.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVE
                     AYYTTGNYSIFIKVMTHTIEELHSVLAGKIQSIDDIQSTETLISLQNPISRDILP"
BASE COUNT         5573 a         4315 c         3893 g         5632 t
ORIGIN      
        1 taatttgcaa tttaaattaa ttgagtgcag aatgccatta gccttttttg aaatcacatt
       61 ccataaaatg gcttgattaa cacaacacaa ttatcactca aattaggatt ttcattatga
      121 gtattttcca acaaaccaat ccaaaccgcc gtcgttatgg gctagctgta tttatcggga
      181 ttattgccgg tattatttca gcattcgtaa aatggggggc agaacatcct ttcccacctc
      241 gtagccctat cgatctgttt accgctgctt gcccgcaacc tgtgttagat gcaatgaatg
      301 ccgcagcaga ccaagtggct gccaaaacca tcgcattaca agaatgttca cgtgcatttt
      361 taaacccacc acacgttttc ttacgtgatt atattggtat cgatccaact gaagcagcat
      421 ttacctttgc tgaccacgcg ttcaactgga ttggtgtcac ccatatgatt ttctcgttag
      481 tctttgcgat tggttactgc attgtggcgg aaatcttccc aaaaattaaa ttctggcaag
      541 gtatcggtgc cggtatcatc gctaatattt gtgttcacta catcaccttc ccggcattag
      601 gtttaacacc accggttgct gaatggccgt tatatgaaca catttctgaa ttagttggtc
      661 atattttctg gttctggacc attgaggtga ttcgtcgcga tttacgtaac cgtattacgc
      721 gtgaacctga tgccgaagtg ccgttagatc aaccgttccg ttaatttaaa attagctcga
      781 tttatacaaa agccgcaatc acgttgcggc tttcttattt tacaagcggt caaattttca
      841 tgaaaattta ccaaacaaaa agcacattgt ttcatgtagc aatgcggagc ttggctttat
      901 aagaaaaata caccaagttg gaacagtttt tcaatttcat cgatctgttt cttatcgttc
      961 acaaaaataa tcacacggtc attttctgca atcatggtgg atttgtgggc gataataact
     1021 tcttcgcctc gcaccaccgc cccaacaatt gccccttgcg gtagttttaa ttcacggatt
     1081 tgtcgtccaa ccacttttga agtggttgca tcgccgtgag cgataatttc taccgctcct
     1141 gcaaccccaa gtttgagtga agaaacttgt aaaatatcgc cttttctaac gtaactagcg
     1201 agagcagaaa tagtagcttg ttgtggggaa atggcaatat caatagtgcc accttgaatc
     1261 aggtgtaaat aggcagggcg ttgcactaaa ataatcactt ttttcgcccc aagccgtttt
     1321 gccagcaggg cggacataat attcgcttca tcatcactgg tgacggcaag gaataaatca
     1381 atattctcaa tatgctcctc aaacagcaac tcttcatcgg aggcatcacc ggtaagcacc
     1441 atcgttttag atagtttttc tgctaatttt tcggctcgaa ccggattgcg ttcgataatt
     1501 tttacccgat actgatcttc taaatcccga gctaacgaag agccgatgct ccctccaccg
     1561 acaatcataa tccgcttatg tgggcgatca agccgttgta gttcactcat tactgctcga
     1621 atatgttggg ttgcacagat gaaaaagact tcatcacctg cctcaataat agttgaacct
     1681 tgtggcacaa tcgctttgtc ttggcggaaa attgccacga cccgagcatc aatatgcggt
     1741 aaatgatcac gcagggctga aatcgggtaa ccgaccaaag gcccaccgta ataggctttt
     1801 acattcacga tactgactaa ctcatcagca aaatgagtaa tttgcaacgc ccccggatag
     1861 tgaataaggc gtaaaatatc ttctttgact aaaatttcag gggcaataat atggtcaata
     1921 ggcaatacat catcattaaa caaccgctct cgttctctca cataatcagc actgcaaata
     1981 cgggcaattt tggtcggcac attaaataaa gtgtaagcaa tttggcaagc gatcatattc
     2041 acttcatcac tattagttac agcaactaat agatcagcat cacctgcacc ggcatcacgc
     2101 aaggtttgag gtgaagcata ttcgccccga atcacctgta aatcgtgttt atctttgagc
     2161 ttgtctaaac gagttgggtc attatccacc aagacaatat cattgtcttc actcaccaaa
     2221 ttttctgcca gcgtagaacc aacttgtcct gcccctaaaa taattacttt cattactctg
     2281 ccactttttg tagttttgcg tagaagaaac catcaccacc gtttggttgt gggaagaact
     2341 gtttttctaa cactttttcg ccgttaaaat cgatttcaag ttgttttgca ttcggtgtat
     2401 cttgtaaaaa ccgttgaatt tgctcgctat tttcttgcgg taacaccgag caagtggcat
     2461 ataacaaaat gccgtttggc tttaaccttt gccataacgc cttgagaatc tcaccctgta
     2521 atgtggctaa ttctgcaata tcaccctctt tacgcaacca tttaatatca gggtggcggc
     2581 gaatgactcc ggttgcggaa caaggggcat caagtaaaat gcggtcaaac agcacaccct
     2641 cttcaagcca ttcctcaggt ttggaagcat cgccacaaat tacctgtgca atctgcccca
     2701 gtcggactaa gttttcacgc actcggctta aacggctctc ttcaatatcc aacgccataa
     2761 cctttgcttt cggtgctttt tctaaaatat gggtagtttt gccacccggt gcggcacagg
     2821 catctaaaac ggtttcacca ttttctgccc cgagcaactc cgctgaccat tgtgcgtgag
     2881 catcttgcac ggttgcccaa ccttgctcga aatgtggcag ttggttcaca tttaccgctc
     2941 tctccagcaa taaagcacac tttggcacgc aagcggtcgg attttctgaa ttttttgcaa
     3001 attcaggctc aaccagctcg ctaatcaacg ccgcataatc attggtcttg atatgttgtt
     3061 gattgactcg aatccacatt ggtgggcgtt ggttgtttgc ttcaacaatt tctcgccagt
     3121 tcggataggc ttttttaagt ttattgacca accattcagg gtggagcgtt tgccaatgtt
     3181 tatctacctt cgctaagatt tcttcttgct ctcgcagaaa acggcgtagc acaccgttag
     3241 tcaaggctcg gaagctatcc agttttagcg ttttagttgc attcactacc tcatcaaccg
     3301 cagcgtgtgc cggcactcgc atataaagca gttggtataa acccactaac agtaagcaat
     3361 gcaccaaacg ggttttgcct ttcagcggtt tttcaactaa taatttgatg atcgattcca
     3421 agcgaggcag cacacggcac actccgaagg tgatttcttg cactaagggt aaatcttttg
     3481 gttcaagctg tttttgagcg tcaggaatca aggtggaaag tgatttacct tgatctaaca
     3541 cctgtaaaat aatggttgca cttattgctc tagaagaaag tgctttgaac gattgttttt
     3601 tcataaataa aaatgccatt ccgacagaat ggcactattg taactgaatg cgggattatc
     3661 ttaaaactaa aattggcttg gtggtgttgc gagccacttt aaccgtatta gagcttaagc
     3721 ccttcgcatt tggtttgctg cttgccagca tcataattaa atccaccgac ttttcatcgg
     3781 caatacggca aatttcttca taaatcgtac catacgccac aatgtgctgc acttttgaac
     3841 cttcaggaaa atggtttttg gtaaattcgt gcaatttttg gtttgcttca gccaccactt
     3901 ctttatcgaa atttttcggc aagaatgcag aaattaagct gttatccacc ggctcaataa
     3961 tagacacaac ccgataaacc gcattcggat tttttgccgt catttgtaat gccgtatcta
     4021 ccacatattt agcacttttt aggtcggcta aatcaatcgc aataagtaat ttgttataca
     4081 tatttattcc gtaggggcag gtcctgtgcc tgcccgaata ttaactaaaa tagcggacgg
     4141 gcacaggacc cgtccctaca tagcatataa atactatgca ataacacact gttttttcac
     4201 tctacggcgt tggtttgcca caataccaaa taccaacaat agagcaggaa tgaagatcca
     4261 atctttagaa ggagcatctt gcggtacggc aatgtagtga atggtttgat cccagtttaa
     4321 gcctgcttta gctgccggag aatccatttc taccatatca atcaccactt ttggtgtttc
     4381 tacgccatca actttgattt tttcatcggt ttgaattagc gttaagccta agtttttcaa
     4441 acgctcttcg ccggttgctc cttccggtac aggtaattga gcgtagaact caatttcttt
     4501 accgtaaggg tttaatccct ctacttttaa agtaacattt tgacctactt tgcttgcaag
     4561 caactgttct tcaaactgca ccggctcgat atgacgttca gacggataaa ttctgtccat
     4621 aaagaagccc ggacggaaca aggcgaaagc ggctacaacc agcaacgccg tttcccacca
     4681 tttgttttta gtcacaatat attgcattgt agcagaggta aaggcgagaa ccccaacagt
     4741 tgcggtaata aacacaaccc agccgtgccc cggataacgc agatcaatta ataataaatc
     4801 ggtattaaaa ataaataaga acggtaaaat gacggttctt aaactatatt taaatgccac
     4861 cataccggta ttaatcgggc taccgcctga aattgctgcc gcagcgaacg aggctaaacc
     4921 aacaggtgga gtcacatctg ccataatccc aaaatagaat acgaataaat gcaccgcaat
     4981 caacggcacg attaacccgt tttgacgacc gacttccatg ataaccgttg ccattaatga
     5041 tgacaccaca atgtagtttg cagttgtcgg taagcccatt cccaaaatta agctgaatac
     5101 ggctaccaag atcaacatta gcacaatgtt gcccattgat aggagttcaa tcacacttga
     5161 aagctgaacc ccaaagcccg ttagtgccac aacgccgaca ataatccctg ctgttgcggt
     5221 agcgagggcg ataccggtca tattacgacc gccagcctca aggctatcta ccacatctcg
     5281 aacaccttgt ttgataatct ctttggttac gctctcttta cggaagaaat tcagtaacgg
     5341 gcgttgggtt aattgaataa aaattaaggt aatggttccc cagaatgcgg ataagcccgg
     5401 cgaaagcatt tccaccatta agcaccaaag tagcacaacc acaggaataa ggtaatgtaa
     5461 acctgcattt acggttggtt ttctttttgg tagagaaaca atttctgagt ttggatcgtc
     5521 cgcttctaaa tcagggtagc ttgccacacg gcgaatagcc agtagatacc ataagcctaa
     5581 gaaagcacag acaatcataa acgcataatc ttctgccaca tcacgaatcc aacctaagcc
     5641 gtagtaaacg ccaatcgcta atcctacgat cactaaaatt gaagctacgg ttcttagcaa
     5701 gaagactaaa atcgggcttg gctcttcggc tcttggtaag ccttgtaaat tcatcttaca
     5761 agcttctaaa tgcacgatat acaccaacgc aatatacgaa attaacgcag gtaagaaggc
     5821 gtgagtaatc agctggctat acggcatatt cacatattcg atcatcaaga acgctgcagc
     5881 ccccattacc ggtggcataa tttgaccgtt tactgatgag gcaacttcca ccgcaccggc
     5941 tttttctttg gtaaagccga cccgtttcat cattggaata gtgaatgtac ctgtcgtcac
     6001 gacgtttgca atcgaagagc ctgaaatcaa gccggttaaa gcggaagaaa ccaccgccgc
     6061 ttttgccgga ccaccacgca aatgccctaa ataggcaaag gcggttttaa taaagtagtt
     6121 acctgctcct gctttatcga gcaacgcccc aaataatacg aacaggaaca catatttggt
     6181 cgaaacccca agggctacac caaacacgcc ttcagtggta atccattgtt ggttgataat
     6241 ttgagaaagc gaacctgagc ggtggcttac aatccaatct gccgggaaat attgcccgaa
     6301 gaagttatag atcaggaata caatcgcaat aatcacaagc ggtaagccaa gactacggcg
     6361 ggtcgcttcc agcaccaata aaatccctaa acagccggcg ataatatctt gcgtatttgg
     6421 cgctccaaaa cgtttcacca aaccttcata gaagaaaata taatacaacg ctaacccagc
     6481 tcctacgatg gcaaacaccc aatctatttt aggaatatga tgtttaggcg agctggcaaa
     6541 agcagggtaa gataggaacg ccaagaacat tgcaaaggct aagtggatag aacgggcttt
     6601 ggtgtcgtcc accaccacat tcaaattaat gcctgcgtga gtaagccatt cttggaatac
     6661 aaacggcaat ggagaagcat aataaatttg gaacacagac caaagaatgg cgacatacac
     6721 aatggctttt ttcgcaagac cggacggggt tcgcccccca ctgtcattgg aggcaaccat
     6781 atcttgtagg tcatcgtaat caaccttaga ttcaactgac ataaagactc ctcaaaacgc
     6841 aagcggtcat tttcttatta aattttacaa atttcctcaa aaaacaaccg cttgctcgtg
     6901 aaaacactgt tgataagtta tcaattaaag gtgaaaatcg ataacttatc aacagtttca
     6961 aaaaagcaaa aaaccagcac gctaaaaaac gtgctgattg aatcaaatta cagaaaggaa
     7021 atattactta atccaacctt tctctttata gtaacgaatt gcaccttcgt gtaacggagc
     7081 agaaagggcg tttttgatca tctcttcttg ttttaagtgt tcaaacgccg gatgtaaacg
     7141 tttgaaacgg tcgaagttat caaataccgc tttggttaca ttgtacactt tatctgcatc
     7201 cacatcggca gaagtcacta acgttgcata tacaccgaag gtttctgtcg gctcatccga
     7261 acctttatat aaaccgcccg gaatcgtagc tttggcataa tatgagtgat ctgccactaa
     7321 tttatcaatt tcagggccgg ttaccggcac taatttcgca tcgcaagaag cggctgcttc
     7381 ttttaacgca ccattcgggt gacctacgtt ataagtgatg gcatctaagt tgttatcaca
     7441 cattacagat gccatttctg ccggtttcaa ttcagaagcc actttgaaat ctttatccgt
     7501 ccagcctttt gccgctaaaa tcacgttcat tgttgcacga gtaccggaac ccgggtcgcc
     7561 cacgtttaca cgttttgctt ttaaatcatc gaacgattta atgcctgaat cggtacgagc
     7621 cattactgta aacggttccg ggtgaagcga gaaaatggca cgaattttat cgtttttctt
     7681 accttcaaat gagcttgagc cgttataggc gtggtattgc cagtctgatt gtgcaatccc
     7741 catatccatt tcttttgctg caatcgcatt taagtttgca accgatgccc ctgttgaagg
     7801 agcgttacat tttaaacctg tttttgctga atcacggttt actaattggc aaatagattg
     7861 acccacaaca taataaacac cggtttgacc gcctgttccg atagtcacaa atgtttcagc
     7921 cgcttgaaca gatgctgttc ccatcacaag gcttgcaagg aaagaaagtt tgactaattt
     7981 tttcattttt aactcctaaa attaaggatc agaaaacaaa gatttattgt tttgagccac
     8041 tgctcacact acaagagata caaaacttct ttgagttgca tttgcctctt agagcttgtt
     8101 tttagcatag attttataat tagtaaattt attttttcgc ataaaaaaat ctatgcctaa
     8161 tgccacaagc taaaatgttt cactatctct taacaaatgc acatcgcctt ttcgtcttaa
     8221 aaaaccgcta cgatcaaaat attcaattaa ttgtaccgtc aattttcgcc catactgcaa
     8281 ctcatctcgc aactggttca ccgaaatgct gccgttttgg gcgataaaat ctttaattaa
     8341 cgttgcaaat tgcccgattt gttcgcttaa taaaaatcta tctttgacga ttgggattaa
     8401 atagcccaat ttcccgactt tatacagcaa attccgcatt tgggtttcat caatcgagag
     8461 ctggcttgca atatccctca cccaaagagc ttgattggtt gcctcaaaca gcggtcgaat
     8521 ttgttgccaa atttgcaatt catcggcgtt caattcgatt cgatgttccg gcaaatgtaa
     8581 ccaaccacga ctattgacca aggctttttg ctccaccaaa tcctcaataa attgatttgc
     8641 caagttttca ggcaaatcca ataacgctat gcgatataaa cgagctttgg tcacgccgat
     8701 ttgatcttga tgttgcaggt ggtattctgc cattttttcc aacacccgtt gctgggcttg
     8761 ggctttaaaa tccgaattaa ataaccattt agacgagaca tcaaacccca gttttgcaat
     8821 atcctctgca aaacattgct ccgcccataa cagcaaggat aaatccatcg ctctgttttg
     8881 cagatagaga tcaaggcgtg tcgcaaagtc attacaagcg gtggtttttg ctaaattttt
     8941 taccaaagct aaacgggctt cggtacgttt atgccgtttt ggtgagtgaa tttccagcac
     9001 ctccgctccg gctaacgtta ggctgtcatc accgctgcgg atgatcaact tatcaccaac
     9061 ggcaatatga agtggttcat ctaaaatcac ttctgcaaaa aattgctgat ttttgaccgc
     9121 ttgttgcccc tcaagcaaat tcaatttgcc ggtaatgtgc gaagcaaaat ggtaaagatg
     9181 cacaatgctg ttttctttga aggcttgatt ggcagtgagt tgaaccgtaa tgcgatcggt
     9241 ggcaaatttc ggctcaagct cggtaatcca atcgcctcgc ttgatttcct ctttttccac
     9301 gttagcgata tttaacgcca aacgttgccc tgccactccc gtttccgaag gcgtattttg
     9361 ggcgtgaatc gctttgaccc gcactttttt accattcgac aaaaataact cagagccaac
     9421 gctcactttt cccgccaccg ttgtgccggt aacgaccaac cctgctcctt tcacattaaa
     9481 cacacggtca atcgcataac ggaacggttt atgggtttgg gtatgttgtt gatttaattg
     9541 aattaaatgt gcttttaatt cttcaatccc ttgctgcgtt tttgccgaag taacaaaggt
     9601 ttttgcttcc gctaaaaacg gatagcttgt tttcacttgc tcaattaagt ggctgatttg
     9661 agtttcttcc gcccgatctg ccttagtaat cacaatcata atatgctgga aattcagcag
     9721 gtggagaata tccaaatgct cttcggtttg tggcttaatc ccttcttcgg cagaaatcac
     9781 caacagggcg tgttgaatgc cgccaagccc tgccagcata ttagataaaa aacgctgatg
     9841 acccggcaca tcaataaacc ctaaaatatc gttctcaatc ggtaaatagg catagcccaa
     9901 atcaatggtt agcccacgtt tttgttcttc gggcaaatgg gcggtgttag tgccggttaa
     9961 ggcttgtaaa agcgatgttt tgccgtggtc aacgtgaccg gcggtgcaga tgatcattga
    10021 tagtccttat aaaaatgagt aactattctg gcgagcagat ttaaaatcta caatatagac
    10081 attttcctga ccaatcagga actttacttg gtacttaccg tttaaaatgg gaatttcttt
    10141 tttcttgcga agtcgataaa catcggcagt aaaggaaagt ttatccactt cactttttat
    10201 tgcatcataa aattgttctg caataatcgg gttttgggat tgttgtaata tataatctgc
    10261 ttgataaaac aattttattt ctgctttctg tagccaaaca atattgtaat caaacttcat
    10321 catttttccg tgattcccaa ttttttgcgt aaatcttcca tcacctgagc gtgggattta
    10381 gtttcaatta agccattttc taattgatgt aataaatcaa gttcatcatt agtataaaaa
    10441 ctttgtggct tatctgtgcg taattttgct aaatcttgtg cgagtatgag ttccatattt
    10501 cccccttaca aacttagatt attcaatatt gtaacctgat aaaactaaag ttcaaggagt
    10561 gtatttaagg cgataaccgc tcttttttcc actcattatt ttccaaccag taatgaatgc
    10621 ggtcgtgtag ccggctactt ctgccttgcc agagttcaat actgtcggga atcagaatat
    10681 agccacccca atgcggtggg cgaggcactg aaagtggata tttcaatgca aattgagctg
    10741 attttagcaa caaagccttg tagttttcga taggctgact ctgctcgctc gcccaagccc
    10801 ccaaacggct ggtgtaagga cgagagtcaa aataggcatc ggattctgcc tctggaattt
    10861 ttgctatttt cccttcaatc cgcacttgac gttgtaattc tgcccaaaag aaggttaaac
    10921 atccaaaagg attatcggca atttcccgcc ctttacggct ttgataattg gtaaagaaca
    10981 caaagccttg tgaatttacc tctttcaaca gcaccattcg gctacttggt cgcccgtttg
    11041 ctgcaacggt agcaatattc attgctgtcg gctcattaac tttggcattg attgactcac
    11101 tcaaccattg ttcaaattgg gtgattgggt ttgagtgaca atctcggatt gaaagcactt
    11161 ttttggtgta atcttctcga atgtggtgca gatccataag gattccttta tcttattcta
    11221 aataatcgga caggcacagt ctgccctacc aaaattaata ttccaacatc tcaatcaact
    11281 tatcaaactc cacgaccgag cgtaaatcta accaaaattt ctgctgagca aaacgcccga
    11341 taatcgggct tgggtaggtt ttaaattgtt gttccaatgc aattaaatcg ctctgttttt
    11401 cagcggaaat agtcactgcc accgaaggta aggtttctgt gggtaacgca ccgctgccga
    11461 tttgagcgag gcttggctca atttgcaaaa tataagcaga atttaaccgc ttgtgtagtg
    11521 cctgttttaa tcgctctgct ttgtgttgca aggtttcaag cggttgagtg agtaaatgaa
    11581 gagtcggcaa gttatcggtt aattgctccg gaaataagta gtggcgtagc gttgcctcaa
    11641 gtgccgataa aatcacttta tcgcaacgta gcacccgttt tagcgggtgt tgttgcagtt
    11701 ggctaatcat cgcttggcta ccgacaataa tgccggcttg cggcccgcct aataatttat
    11761 cgcccgagaa ggaaaccaaa tctaccccag ccgctacttt ttgctgaacc tttggctcag
    11821 caggcaaatt aagagcttgc atatcagtta gcgaaccact gcctaagtcg gtaatcacag
    11881 gcaggttaaa ctctttaccg agagccacca attcctcttc cgacactgaa ctggtgaacc
    11941 cctcaatgtg gtagttactg gtgtgaactt tcattaaaaa ggcggtattt tcggtgatcg
    12001 cgttgcgata atcctttaaa tgagtgcgat tagtcgtacc aacttccacc aatttgcaac
    12061 cggcttgagc cataatatcc ggaatgcgga atgccccgcc aatttccacc agctcgccac
    12121 gggaaacgat gacttccttg ccttgtgcga aggttgctaa catcaacaac accgctgccg
    12181 cattattatt cacaatgcaa gcggcctccg ctccggtaag tatttgcaac aactcggaaa
    12241 tgtagttatc tcggtgcgag cgcttgcctg cttcaatatc aaattccaac gccacattgt
    12301 ttcgcattgc gttggttgct gcctgtatcg ccttttccga ccacaaccca cgccctaagt
    12361 tggtgtgtaa caccgtaccg gttaagttga acacggaacg gattttcacc tcactcaacg
    12421 cttgcacttt ttgttccagc cttataaaaa acaggttttc atcggcaata aaatccggca
    12481 aggcttgctg ttgggaaata aattgacgtg cttgagtaag caaactccta gcttgttcag
    12541 ccacgctgga atatgcaaat ttttggcata attcgaccgc ttgtggcttt ttcaacaaga
    12601 ggtcgagcga gggaatttgg cgaaatagtt gttgcataat gtgaatgatt gagagaatat
    12661 tttggacaat tctaataaat aaagtacaat attgccaatt tttcggaagt gcgtcatctc
    12721 cggtgaggtg gcaggacttc aaatcctgtt gaggacgcca gcgttctcgg gtgggttcaa
    12781 ctcccatgca cttccgccac atttcaaaag ccgttaatct ttaacggctt tttgcatttc
    12841 tgccacattc tctctttccg ttttgataaa aaatgagact tagctcacat ttttttattt
    12901 ttctgtttgt agtaaaaatt tattaaatta taattatttg gagtatttct tcacaaacaa
    12961 aatctagtcc attgactacc ttttgaacat aaaaaaggaa ctgttatgtc aacactatct
    13021 cgtgattcta ttttaagtca aattcaaaac gggctgattg cctcctgcca accggttgat
    13081 gacggcccca tggataaacc tgaaattgtc gccgcaatgg cagcagcctc tgtgattggt
    13141 ggtgctaaag gcattcgcat tgaaggtgtc gataatttaa aagccgctcg tgcggcagtg
    13201 aatgtgccga ttatcggcat tgtaaaacgt gatttgccag attcccctgt gcgtattacg
    13261 ccatttttag aagatattga tgccttagcc gaagccggtg ccgatattat tgcggtggac
    13321 ggcacattcc gcacccgccc ggtcagcatt gaagaggcgg taaaacgcat tcacgaaaaa
    13381 ggttgcttgg caatggcgga ttgctccacc cttgaagaag gtttacattg ccaacaatta
    13441 ggctttgata ttgtgggtag tacaatgtct ggctacaccg gtggcgaagt gcctgatgag
    13501 ccggactatc aattagtgaa agatttaaaa gctgccggct gtaatgttat ggcggaaggt
    13561 cgctacaaca cgcctgaact ggcaaaaacg gcgattgaaa tcggggcgga ttacgttacc
    13621 gttggatcgg cattgacccg cttagagcat attgtgagct ggtttgccga ctctgtaaaa
    13681 tcggctcaaa aataggagct gcttatgcgt tgtttagcaa tagacatcgg tggcacgaaa
    13741 attgccacgg caattgtgca acacaatcaa gtgtcacaac gccaacaaat tcagaccccg
    13801 actgataaac cacaagctga tcaggcaggc agtttgcatc aagcgattgg tgagataatg
    13861 caacattatc aagggcaatt tgattttgtg gcagttgcct caacaggcat tatcaataaa
    13921 ggggtgctta ccgcattaaa tcctaaaaat ttaggcggat tggcagaatt tccgttgaaa
    13981 caaagcattg aaaaacatac cgataagccg attgcattat taaatgacgt gcaagcggcg
    14041 gtgtgtgccg aatatttaaa tgaagaccaa caagcggtca aaaattttgt atttattacc
    14101 gtttccaccg gcgtaggcgg cggcattatt ttaaacggcg aactgcaaat cggcagtaac
    14161 ggcattgcag gacatatcgg gcatactcta gccgatccga acgggcctct ctgtggttgt
    14221 ggacgagtcg gctgtgtcga agcagtcgca gcagggcgtg caatagaggc agtttccagc
    14281 caatgggaaa agccttgttc accgaaagag gtgttcgagc gattccgcca aggcaaccca
    14341 caagcggtcg aattagtaca aaaatctgca aaagcgattg ctaatttaat tgcagattta
    14401 aaaatcagtt tagatataca aaaagtggtg ttaggtggca gtgtgggctt agcggaaggg
    14461 tatttaccgc aggtgtccaa ctatttagct gaaatgccga gcgtatatca ttgcatattg
    14521 gaaaatgctc tatccgggca agatgccggc ttaatcggtg cggcttggtg ggcggaaaac
    14581 caacttaatc aaggttttac tctttaacaa attctaactc cggagatcca aatgaaaaac
    14641 ttaaaaggta tttttagtgc gttactcgtc tctttcaacg aagacggcac catcaacgaa
    14701 aaaggcttac gccaaattat ccgccacaac atcgacaaaa tgaaagtgga cggtttatat
    14761 gtcggcggtt caaccggtga aaactttatg ctttctaccg aagagaaaaa agaaattttc
    14821 cgcattgcca aagacgaagc gaaagatgaa atcgccctta tcgcccaagt cggtagcgta
    14881 aacttaaaag aggcggtaga actgggtaaa tatgccacag aattaggcta cgacagctta
    14941 tctgcggtca caccgttcta ctacaaattc agcttcccgg aaatcaaaaa tttctacgaa
    15001 accattattc gtgaaaccgg caacaaaatg attgtttact ccattccgtt cttaaccggc
    15061 gtaaacatcg gtgtgagcca attcgctgaa ttatttgaaa acgaaaaaat catcggtgta
    15121 aaattcactg ccggcgattt ctacctgtta gagcgtttac gcaaagcgtt cccgaaccac
    15181 ttaatctacg caggtttcga tgaaatgatg ctaccggcaa cggtattagg tgtggacggt
    15241 gtaatcggct caaccttcaa cgtaaacggt attcgtgcaa gacaaatctt tgaattagcc
    15301 caacaaggca aaatcaaaga agcatttgaa atccaaaatg taaccaacga tttaatcgaa
    15361 ggcattttag gcaacggttt ataccaaacc atcaaaggct tattggagtt agaaggtgtg
    15421 caagcaggtt actgccgtga gccgatgacg aaagaacaaa ctccggcaca aaaagaagtg
    15481 accaaacagt taaaagctaa attcttgtaa tttaagttgc aaaaggctaa acgaaaatca
    15541 ccgcttgtag taacaagcgg tgattttttc tcaacgactt gcaattaatg aagccattct
    15601 gctttttcta ccacggtgta acggtcacca ttatatttta atcgcacttt ttcttggcga
    15661 gtattttctg atttcaactc tctacctata tcataaaacc ctgtactcca gatattttga
    15721 gtaatatccg cttttacaat gatatcattg aagccgttgg tctgtttgtt atccatttgc
    15781 aataccaagt ttgtcgtttc cgttttggtt tctttatcat ctaaaataga ccaaaaagtc
    15841 atcgggtaat caaaaacaag ttttaacttt tctttttccg gcacaaataa catcaaatga
    15901 tcatttgcag aatactcagg agcacttgga ccacgagcag cattattaaa cctcacgccg
    15961 aaagctctta ctttgtcgtt tagaatataa cgggcggtat caattttaag actatctgca
    16021 ttcacatcga tagaggcatc gatctccata tcctgctccc acgattgcaa tatcgcatta
    16081 tcattcacac gagcaacaaa aagcgtccac ttaggtgtgt tttcgtcgtt ttgataattt
    16141 tctttgctgt atttaggctc tattaccgca taactcacta aggtttccgt tgaattgtta
    16201 ggagctgttt tacaggcaga agctaaagta cgagcagaaa gtttctcttg agaaatctta
    16261 aagtaatgag caataatttg atgttgttgc tcagcacaaa cctgtgtgtt attaccttca
    16321 tctgctttta tttgagttgc aagcgtaagt aaaagaacta agaggagtat ctttttcata
    16381 tagatttatc cgtatagaaa gataactcat tctaaaagaa aagcagtcta ttctctacca
    16441 cattttgcaa aaagtggcaa aaatagaccg cttgtatggc atatcactcc gataaactca
    16501 ccccataaaa tggcgtgtag ccaaacggat tttgcacaaa accttgcacc cgtttgctga
    16561 gtggtacata attgatagcg tgagccagcg gaataaatgg cgtttgttcg ttggcaattt
    16621 ccaccgcttg ttgatagagc ttcgcccgct cgtcacggtt ttgggtttgt acagcttgag
    16681 ctaataactg ctcaaatttc tcatccgtcc aacgcccata atttgttccc ggaatattag
    16741 atttgcttaa taaagggaag aggaaattat caggatcacc attacggctt gtccaaccat
    16801 aagtgccggt agagaactcg ccttcacggg tgcgtttgtt aaaatccgcc cattcgtggg
    16861 tcactaattt cgctttcacc ccgattttcg cccaatccgc ctgaataatt tcagccgttc
    16921 gacgtgggtt tgggttagaa gggcgcacta ccggttgtac ccaaatttcc gtttcaaatc
    16981 catcggcaaa gccggcttct gttaataggg ctttggcttt ttcaaggtta aattcatatt
    17041 gcggtaaatt tggattatag cccaacaccg aatcagggaa cggattactt gccaccgtgc
    17101 caccgccttg ataaacagcc tcgacaatcg ctttcttatc ggttgcataa tgcaaggctt
    17161 ggcgaacttt ggcgttattt aatgccggtt tggtgctgtt taagccgata taagctaaat
    17221 tcagcccgtc tctctgtaac aaattcacct tcggatcttg tttcatttgg gcaatatcgg
    17281 aaatattcgg gaaatcaatc acatcgcatt cacccgcttt cagtttagca taacgagtgc
    17341 ccgcatcagg ggtaatacta aaaatcagtt tctcaaattt tgctttacct tggaaataat
    17401 ccgggttcgc aacataacgc accgcttgat cggtttgata ggcttggaac acaaaaggcc
    17461 ctgtgccgat cggggcttga tccaataact ccggcttgcc ttccgccagc aatttatccg
    17521 catattcttt tgaataaatc gacaagaaat ccatcgctaa ggttgtcaga aaaggagcat
    17581 taggttgctg taaggtgatt ttaacagtgt aatcgtccac tttttccact gtttttaaaa
    17641 tcttcggcaa attcatccaa tggtaataga aataagtacc gtcagagacc ttatggtaag
    17701 ggtggtttaa atccatctgg cgttggaacg agaacactac atcatccgca ttcagcgttc
    17761 gagttggcgt aaattgttta ttggaatgaa atttcacgtc tttacgtaaa tggaatgtgt
    17821 aacttaagcc atcgtcactg atttcccaac gttccgccaa actcggctca accgttagtt
    17881 caccggcttt aaacgctaat aagcgattat aaatttgttg tgaactggcg ttgaaatcat
    17941 tggcatcatt agtaattgca ggactaagtt tcatcggtgg agttgccacg caattaatca
    18001 acgtatttac cggagctgct gccaccaaac tgctggcact taagagtaaa acagaaagag
    18061 ataattgaga aagacgcata aagactcctt aacattttct actaacttac tcggcattaa
    18121 cgtattttca aaataactaa aggttataat ttataatcag aataatcagt tgcaaaccaa
    18181 tgattcttgg ctagaatatt ggcagttttt taaacgagag atttactatg acatcaattt
    18241 gtatcatcac cggcagcacc ttaggcggtg cggaatatgt tgccgatcac attaatgagg
    18301 tattaagcga gcaaggtttt gaagtggaac tgtttaacca agccaccctt gccgatattg
    18361 aaggtaaagc caatctgatt gtcgttacct ccacccacgg agccggcgag ctacccgaaa
    18421 atatccagcc gttatttgat gatttagcaa atagcacggc ggatttcagc tcaatgaaat
    18481 ttggcgtaat cggcttaggc agctcagatt acgacacctt ctgcaatgca gtaaatattg
    18541 ttgaagaagc tctcaaagcg aaaggggcaa gccaagtttg cgaatcactg agaattgatg
    18601 taatgaataa tttcgaccac gatggcagtg ctgaagaatg gttaccatca tttattgaac
    18661 aattataact taagtatcaa tgaaaaaaat cagtgcaaat aaggcgaagt ggattaaaat
    18721 tgctattatc ttaatctata tgttcagccc tgtagatatt ctacccgaag caattttagg
    18781 cccactcggt ttggttgatg atgctgccgc attaatgcta ttgattaaga ctattttgga
    18841 aaaataggca tagtagacaa aatagttgca aaaaaccaaa acaaaacgac cgcttgtaac
    18901 ccaatacaag tggtcttatc ttttacttaa ttcttttaag ggagaatatc tcttgaaata
    18961 ggattttgaa gtgaaataag cgtttctgtt gactgaatat catcaataga ctgaattttt
    19021 cctgctaata ccgaatgcaa ctcttcgatg gtatgggtca ttactttaat aaaaatagaa
    19081 taattaccag tggtatagta cgcctcaaca acttcattaa attcactaag tttagcaatt
    19141 actttatcat aatctttggc tgattttaaa ataatgccaa taaagcaaca cacgtcatac
    19201 ccaaccttac gctcgtccac tacgattttg gtagattcaa taatgccggc ttggcgcatt
    19261 ttttcaacac ggacatggat tgttgcggca ctcacaccaa aaacttttgc catttccgca
    19321 taaggcgtgc gagcatcttt aattagccaa cgtaaaattt tttgatccag cttatcaatt
    19381 tccgatttag tcgtgttttt actgtacatt ttt
//
LOCUS       DANLUT010000023        19226 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLUT010000023 DANLUT010000000
VERSION     DANLUT010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19226
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..820)
                     /locus_tag="PXB38_000741"
     CDS             complement(<1..820)
                     /locus_tag="PXB38_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353090.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     FHKLLVEIKSQYKSLYRYEALENHFEPVYELLINKLNLLNINNLETTIDIHLITK"
     gene            1003..1950
                     /locus_tag="PXB38_000742"
     CDS             1003..1950
                     /locus_tag="PXB38_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL5353091.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQPTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTELAKKCFEMSENGATRSEIAKVMNASTG
                     MRLGMLEGDFENGYVSVGNGISAIDRIKTVKELIDELMA"
     gene            complement(2013..2357)
                     /locus_tag="PXB38_000743"
     CDS             complement(2013..2357)
                     /locus_tag="PXB38_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL5353092.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLALLLVKYCKK"
     gene            complement(2458..2727)
                     /gene="yedF"
                     /locus_tag="PXB38_000744"
     CDS             complement(2458..2727)
                     /gene="yedF"
                     /locus_tag="PXB38_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL5353093.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCAQSINNIPIDTKNHGYTLLSVEQDGTKLRYLIQR"
     gene            complement(2768..3970)
                     /gene="yedE"
                     /locus_tag="PXB38_000745"
     CDS             complement(2768..3970)
                     /gene="yedE"
                     /locus_tag="PXB38_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDL5353094.1"
                     /translation="MLAIWQSFKQNYLIKYWNPVAAVIAAGIISAYYFGITGTYWAVT
                     GEFTRWGGHLLNALGVDVSNWSYFQLIGLDGTIFTRIDGVMILGMFAGCLSAALWANN
                     VKWRNQPHKKRIIQALIGGALAGFGARLAMGCNLASLFTGIPQFSVHAWFFTFATAIG
                     TYFGVKVTLLPMFRVKLELKKGAAKIKENDPKQANRRFWVGMLIFITYLSASLYVMQS
                     SIKLGFAMLCGLAFGLLIERAQICFTSAFRDLWITGRAYMAKAIIFGIIAGTIGVFSY
                     IQLGVSPKILWAGPNAIIGGLLFGFGIVLAGGCETGWMYRSMEGQVHFMWVGVGNVVG
                     STLLAYYWDDLAPVLTLDYEKINLLKEFGPVGGLFVNYGLLILCLIAVVWWEKRFLAK
                     AKAKLATA"
     gene            complement(4194..5789)
                     /locus_tag="PXB38_000746"
     CDS             complement(4194..5789)
                     /locus_tag="PXB38_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL5353095.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTMRTAKALGISAMMHGYLPFDK
                     HGNQLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYRLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKALFLNTD"
     gene            complement(5802..6752)
                     /locus_tag="PXB38_000747"
     CDS             complement(5802..6752)
                     /locus_tag="PXB38_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353096.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASTFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            complement(6755..7714)
                     /locus_tag="PXB38_000748"
     CDS             complement(6755..7714)
                     /locus_tag="PXB38_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353097.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            complement(7698..9188)
                     /locus_tag="PXB38_000749"
     CDS             complement(7698..9188)
                     /locus_tag="PXB38_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5353098.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            complement(9245..10219)
                     /locus_tag="PXB38_000750"
     CDS             complement(9245..10219)
                     /locus_tag="PXB38_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5353099.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLSVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            complement(10406..11266)
                     /gene="araC"
                     /locus_tag="PXB38_000751"
     CDS             complement(10406..11266)
                     /gene="araC"
                     /locus_tag="PXB38_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL5353100.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMQGY
                     MLQLTTFGHGSVSDGKHVFSAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFLPNPK
                     WNKWLNWSNMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            complement(11381..12295)
                     /locus_tag="PXB38_000752"
     CDS             complement(11381..12295)
                     /locus_tag="PXB38_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5353101.1"
                     /translation="MLSPYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGVRFLI
                     GGLTLLVFIFWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTASI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSMFLFLSIIIRNIQNLVVKFARELNVFTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMAAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            complement(12386..12604)
                     /gene="cspD"
                     /locus_tag="PXB38_000753"
     CDS             complement(12386..12604)
                     /gene="cspD"
                     /locus_tag="PXB38_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL5353102.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            complement(12706..13278)
                     /locus_tag="PXB38_000754"
     CDS             complement(12706..13278)
                     /locus_tag="PXB38_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL5353103.1"
                     /translation="MKILRKFAAVCVVSMAMLSANGNLLSISEQEINDYLATKLAEKI
                     PLQDKVGVPHLFELDYHLHSLTSQIGRTEEKKVAISGVVDGLLKAKGKKYDASIQLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLNSFLNSTPVYTLD
                     ENKAKEAMVKKFGKAIVIENGNIKLETTIF"
     gene            13372..13512
                     /locus_tag="PXB38_000755"
     CDS             13372..13512
                     /locus_tag="PXB38_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353104.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            13571..14725
                     /gene="tgt"
                     /locus_tag="PXB38_000756"
     CDS             13571..14725
                     /gene="tgt"
                     /locus_tag="PXB38_000756"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL5353105.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRNDITPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVNGQK"
     gene            14738..15249
                     /locus_tag="PXB38_000757"
                     /pseudo
     CDS             14738..15249
                     /locus_tag="PXB38_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
     gene            15297..15509
                     /locus_tag="PXB38_000758"
     CDS             15297..15509
                     /locus_tag="PXB38_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5353106.1"
                     /translation="MNYSLDLTDYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENRVIFTIA"
     gene            complement(15506..16870)
                     /locus_tag="PXB38_000759"
     CDS             complement(15506..16870)
                     /locus_tag="PXB38_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL5353107.1"
                     /translation="MFKSELSGTATFSILANGATVSDQDFTLTIERHIPISAQIAPPK
                     VIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQSRVTFLWRGAT
                     KNVRIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTLPVDENTQRRA
                     LLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTEAPNIAKGKLQ
                     QLIFESATLGNKRRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKTILDNMIAQKV
                     ILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTKERIIGGSSYG
                     GLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKEKLPLCFFISA
                     GFYESGKSAILETSRHLKDVLLAKGYPVTYVEQSTSHGYLAWQGLISEGLKTLLGSNK
                     CTSN"
     gene            complement(16852..17073)
                     /locus_tag="PXB38_000760"
     CDS             complement(16852..17073)
                     /locus_tag="PXB38_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain fatty acid transporter"
                     /protein_id="HDL5353108.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQSKLIQKAQQPL
                     SLSIIFPAKALACWLKMSLVNKILCLNQN"
     gene            complement(17117..19192)
                     /locus_tag="PXB38_000761"
     CDS             complement(17117..19192)
                     /locus_tag="PXB38_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5353109.1"
                     /translation="MKIKKYSLSLITLAIVAPQVLAETTSQAELNAIEVKEKLAATTG
                     YIPVYTTVGTKTLTSLARTPFSINVVSDDLMHDQAVRSVTDSVAYTSGMMGGYRGNNS
                     LIEISIRGIGNKSDGSTIPTYLNGSRYQTAFEIDPFFLESINVIKGPNSILYGQANPG
                     GVMDIITKKAGSNPHRHLQFVVGNHQRYQIGLDIEENLSNTLSARLIGQLERTNWNTQ
                     FVKEKGGAFAPSILWKPTTNTELNVYAYYAKKPKAGDRNFLPKEGTINSVNGKKLPYD
                     MFLSDLNYHGLKAEQMQVGYNFSHKFTPNLTFRQNASYHNGEENFKNLVYWGDVGSVL
                     ERRARRWDVKTQEINLDNQLEWVFSTANINHTLLAGIDYKRVREDLDNYMGIAPDFDW
                     QNPVYGVTVTEPSLFSSEVKHLKQLGVYLQDQIEIGNFDFLLGGRYDRAKNSNQDRLN
                     SKTENNQEGKFTWRTGVVYNFENGIAPYISYSTSFVPSAEKDAQGNFLKPTTAGQWEV
                     GMKYQPTQDTLLTLAGFKITQKDLANYQWQTRSYEQIGEVQTKGIEVSLNQQLSDKFS
                     IAPSYAYLKKEITADKDGTTIGKTQWGVPRHQASLWAKYKFFDKLTAGVGVRYMGTTF
                     GDNQNTFTVPAYTLYDMMLAYDFMPNLNLQLNAQNLTNKKYVASCANNFSCFYGKDRN
                     LSATLNYHF"
BASE COUNT         5863 a         3718 c         3832 g         5813 t
ORIGIN      
        1 ttttagttat tagatgaata tcaattgttg tttctaaatt atttatattt aataagttaa
       61 gtttgttaat caaaagttca tatacaggtt caaaatgatt ttccaacgct tcgtaacgat
      121 aaagagattt gtattgtgat ttaatttcta ctaacaattt atgaaattca tcactcagat
      181 gttttttgaa aatttgggtt cttgccaagc tttctaattg cattgcaata ggtaaatcaa
      241 cattaatttc aggtgtataa cgcacaccaa gattattaat ggcttgttga ttgtattgtt
      301 caaaccattt gtcagataat tcgctttcgt taaaccaaaa gaattttttg cctgcatttt
      361 caggttttga taataagtca gataattcaa aacttcccca aaattcaaat tctatttcac
      421 gaccttgtga ttgagcaaag tctttccatc tttgggtata ctcctcccat ttggtaagaa
      481 atgatttctt tccagataca ttggcatttg ctctatcggt tgccacacaa acatagtatt
      541 tggttagttt aggatagttt tttaaagatt ctttaaagga atcttcaatt tgttgccatt
      601 gtgatgaaga aaatgagctt aaaaaatatt tggcttgcca accacatacg gaaccatctg
      661 gcaattcaca cattgcttca atcccaccat caggtgcaga aattcgagta aattttcctt
      721 gagatttaaa ttcttggcgt gccaattggc atactagctc ttcaaaagca ctattttgag
      781 aaccttgtaa gggcttgatg ttttcccatc taatagacat tttcttttac cataattaaa
      841 tattcaattt tgttgatatg aggattggcg tgtgtatttc aagtatttta gcattgataa
      901 ttttccaaat ccgaaaacca ccttcccatt ttcacgcatt ccctctcaaa tccaaaacca
      961 ttaaactacg tccaattctt tttattcaaa caggaaaatc caatgaaccg cattacccaa
     1021 atcttaaata tcaagcaccc tatcgtccaa gcgccaatgt cttggctgac ggacgctcat
     1081 ctggtagcaa gcgttgccga ggctggtggg cttggttttt tagccccaca cgcagggcaa
     1141 cccaccaatc caacttccaa cgaagaagta cttgaccgta tgcgtaacga gattcgtaag
     1201 gttaaggcat tgaccgataa gccttttggc gtaccattta ttttgtctta tgatttttcg
     1261 ctgattccgt taatggtgga tttattcatt gaagagcgtg tgcctgtggt gctggataac
     1321 ggctggcttg acccagagat ttacgccaaa ttcaaagctg ctggcattaa aatcatctgc
     1381 cgtttgccta accccaattt ggcggacgct ttaaaagccc aagcattggg agcagatatt
     1441 ttggtgctga cgggttttga tgagggcggt actttgccga tgaaagaggt aggcagtttt
     1501 aatgtgctgg cggaatttgt gggcaaggtg gatttgccga taatgctggc tggtggtatt
     1561 gccgataaaa aagcggtgca ggctgcctta acgcttgggg ctgaaggcgt gtggattggc
     1621 acggcattta tcgccaccga agaatgccgt gcaagcgaaa aagtgaaaaa ctggattgtg
     1681 gaggcaaatg ccaatgatct gctgttattc cgtactgaac cacattacta ccgttcactg
     1741 ccgactgaat tagcgaaaaa atgctttgaa atgagtgaaa atggggcaac tcgttctgaa
     1801 atcgccaaag tgatgaacgc tagcacagga atgcgtttgg gtatgctgga aggcgatttt
     1861 gaaaacggct atgtgtcggt gggcaatggc atttcagcga ttgaccgcat taaaacagtg
     1921 aaagaattga ttgatgagtt gatggcataa ttttggtaaa aaatgaccgc ttgtagtatg
     1981 gctaaaccat ataacaagtg gtcttttatg ctttattttt tgcaatattt tactagcaat
     2041 aatgcaagtg atgcacctag catatctgcc agtccatcaa gccaagatcc ttctctggtt
     2101 gaggtgaagg ttgcctgagc ccattcgctg gtgaaagcat agagtaaggc aaaaattatt
     2161 aacccgaaat aaggtatccc tttctttgag cggataaagg cgtttgcaga taaccaaatc
     2221 tggataaaga ataaggcaaa atggcttact ttatcaaaat gtggaaaagg tggtatatca
     2281 ttggtgcttt cacgaaaaag taaagcataa atgccaataa taaaccaaaa tattgcaagt
     2341 aaagcgtatt tattcatttt tcttttacct cttagaataa aacgagcctt gcgttacaag
     2401 gctcttgaat agttgctatt ttacgacaag cggtcgtttt tcactaatgt tttgcaatta
     2461 acgctgaatt aaatagcgta atttagtgcc gtcttgttcc acgcttaata gggtatagcc
     2521 gtgattttta gtatcaatcg gaatattatt aatcgattgg gcacaatcgc ttaacagttc
     2581 caatatctcg cctttttgta gttgaggcat tgtttctaac atcgtaatcg cagggtaagg
     2641 gcaaggttcg cctaaggtat ctaaggtgta atcaggcgtg atgtctttcg gatctttatc
     2701 tagtttttgc acaacggtga atgccatagt cattttcctc ttgttggttg aaaataaatt
     2761 aaaaagatta cgcagttgcc aattttgcct tcgctttggc aaggaagcgt ttttcccacc
     2821 aaaccacagc aattaagcaa agaattaata agccataatt cacgaataat ccgccaaccg
     2881 gcccaaattc tttgagtagg ttgatttttt cataatcaag ggtaagcacc ggagctaagt
     2941 cgtcccagta gtaagccagc agggttgaac cgactacatt gcctacgccg acccacataa
     3001 aatgaacctg tccttccatt gaacggtaca tccagccggt ttcacagccg ccggcaagca
     3061 caatgccaaa tccgaataat aagccgccga taatggcatt tgggccagcc cacaaaattt
     3121 taggtgaaac acctaactga atataagaga acacgccgat tgtgccggca ataatgccga
     3181 aaataattgc ttttgccata taagcccgtc cggtaatcca taagtcacgg aaagcggagg
     3241 taaagcaaat ttgggctcgt tcaatcaata agccaaaggc taagccgcaa agcattgcaa
     3301 aaccaagttt gattgaggat tgcattacat aaagggaagc agaaagataa gtgataaaaa
     3361 tgagcatacc aacccaaaaa cggcgattag cttgtttcgg atcgttttct ttgatttttg
     3421 ctgccccttt tttcagctct aatttcactc taaacatcgg taataaagtc acttttaccc
     3481 caaagtaagt gccgatggcg gtcgcaaagg tgaaaaacca agcgtggacg gagaattgcg
     3541 gaataccggt aaaaagagag gcgaggttac agcccattgc taaacgggct ccgaaaccgg
     3601 ctaacgcacc gccaatcaag gcttggataa tccgtttttt atgtggctga ttacgccatt
     3661 tgacgttgtt cgcccataat gcagcagaaa gacagccggc aaacataccg agaatcatca
     3721 caccgtcaat gcgggtaaag atggtgccgt ctaagccgat gagttgaaaa tagctccagt
     3781 tcgaaacatc aacacccaaa gcatttaaca gatgaccgcc ccaacgggta aattcccctg
     3841 taaccgccca ataagtgcca gtaatgccga aataataagc tgaaataata ccagctgcga
     3901 tcactgctgc aacaggattc caatatttga ttagataatt ttgtttaaaa ctttgccaaa
     3961 tcgctaacat aaaacacctt aactaaggat agattaatcg gatttgcaag agggtataac
     4021 gatgaagaaa gggactgatt gatacagtaa ttagttcatt tcctatacac aaaacttgcg
     4081 atatatcaat gcacatttta caaatgcgtc tttatagtag gtattttttg tacaaatgta
     4141 aataacaagc ggtcgttttt ggcaaaaata accgcttgtg atacttaaat tatttaatct
     4201 gtatttaaaa acagcgcttt ttctaccaca ggaatgcctt gcttataacg ttgcataaag
     4261 cgttcataac cttcactcat tgttttatcc ggttgaacca gattgagttt ggtggtgttg
     4321 aaaatgcaat tatctaaata ttcttctaaa cggtaacggt ctgatacgct gagaaagtct
     4381 gccagtaatg caattcccca agctccgcca tttgaagcag tacttgcggt agccaatgga
     4441 atattcagtg cggaagacag aattttttgt gcaacacctt ctgttttaaa tataccaccg
     4501 tgaccgagaa tacgggaaat ttccactttt tcttggttaa tgagaatgtc cattcctaat
     4561 ttcattgcac caaaagcggt atagagatgg gttcgcataa agtttgctaa gttaaaatgg
     4621 gcattcgttg ggtgcaagaa aaccggacag ccttcggata aaccgacatt atgttcaccg
     4681 gagtggaagc cgtaggataa tagccctcca caatctgcat cgccttgcaa ggcatggaga
     4741 aataacattt cataaagttc ttcggtgcag atatttacgc caaaaaccga taagcattcg
     4801 ccgaataaat tcacccacgc attaatatca gaggtgcaat tattagcgtg agccattgcc
     4861 actaatttac ctgccggggt cgtcacaata tccagctctg aataggcttt ggatagggct
     4921 ttttctaaca caatcattgc aaatgcggag gtgccggcag aaatattacc ggttttttct
     4981 ttgatacagt tggttgcaat catacctgtt ccggcatcac cctcaggtgg acaaagtgga
     5041 atgccagctt gtaaattatc ggttggatct aacaattttg cacctttttc ggttaatttg
     5101 cccgcttgtt caccagcaac acgaacttgt ggcaaaatcg cttccaattt ccaaggcata
     5161 cggtagtcgg caatggctcg atcaaattga gccagcattg ttggattgta ggatttcaac
     5221 tcagtatcta tcgggaacat accggaagca tcgccaatcc ctaacacttt gtgatcggtc
     5281 agttgccaat gcacataacc tgagagggtt gtcaggtaat caatttccgg caagtgaggc
     5341 tcttggttaa gcaatgcttg gtgtaaatga gcaatactcc aacgttgcgg aattgggtat
     5401 tgaaagagtg cggtcaattt ttccgatgag gttagggtaa tgttgtttcg ccaagttcta
     5461 aaggcaacca gctgatttcc gtgtttatcg aaaggtaagt agccgtgcat catcgcacta
     5521 attcccaatg ctttggctgt gcgcatggtt gtgtgatatt tttctttgac tgtcttgctt
     5581 aaatccatat aagcagcttg tagtttttcc catatttcat tttgatgata ggtccaaata
     5641 ccgtcaatca gtcgattttc ccaatccgcc ccaccggttg ctaaaatcgt cccatctgag
     5701 ctaattaaca ccgctttaat tcgggttgag cccaattcaa taccaataac agtattacct
     5761 tgttcaatga gttgtttttc attttgcata atctaccacc attactgtgt tagtcggaaa
     5821 aggcgatttt tttggaggaa gataaagaat aacaataagc ttccccataa aatcattgta
     5881 atgtaactgc taatgccgag catatttaag ccactttcaa tcacttgtaa taaaactaag
     5941 gcgagcataa tccctaatag tttcccttta cctccatcag ggttaatacc gcccaatact
     6001 gcggctaaaa tggagatcaa caaataggaa tcaccataag aggcttttgc agaattgagt
     6061 ttagacatca tcaaaatagc tgcaaataca caaagaattg aggagataac ataaacccaa
     6121 atcagcactt ttttggtatt aatacccgaa taataggtgg ctttttcatt attgccgatg
     6181 aaataaaccg ctttacccat tgcagttttt tctaagaaaa accaaatcag cccagcaaga
     6241 aagagaaaga ttagaatggg tagcggaatc cataaaaagg ttgaagcatt aatactcaac
     6301 attgtttccg gaaagttcgc aatggttgaa ccgttagtga ctagaatatt aatgccgtta
     6361 attaaagtca ttgtgcctaa ggttgccaaa attggtgaaa cacgaataat ggcaattaat
     6421 gtgccgttga gtaatccaat ggctaaggca cagcaaaggc ttaataaaat agcaataaat
     6481 aaccaagaaa taccggtata ttgcgtaata aagtaggcaa taattaatga gcaagcattc
     6541 attccggcaa taatggaaag atttattcca cctgttaaca tcggtaatgc cattgctagg
     6601 gttaaaatac ctaatactgg aatttgtgat gccatagatt gaaagttact gacagaccaa
     6661 aaaatatccg gaatgaaaat actaaaggcg ataactgcaa ctgcgaagag tgctaagaga
     6721 tagaaaatcg ttggatccag tttacttttc atcgttatgc tccttgtttt ttccgctgac
     6781 ttaaggctgt tgcactaata cttaagataa tgatgatacc ggtaataatg gtttgccagt
     6841 aagacgatac attcattaaa tttagcccgt tttgaataat cgccagtaac attacgccca
     6901 ttactgtacc aagcagggtg cctctaccac ctgataaact agcaccacct aatacaacgg
     6961 cagctaggac ggttaattca taacccagta gtgaatccgg tgcgacagat tgtacggtat
     7021 aagattgcac tatgcctgcc aagcctgcca taaagcccat ataaccgtat gcaaatagat
     7081 ggagaaataa gagattaaac ccaatacggg aggttgcatc cggattacca ccaagagcgt
     7141 aaatttttcg accaatagtg agtttattgg taattaagcc ggttaatatc accgccaaaa
     7201 tagccattaa tgcttgaaac gataatccaa attccactcc ctcagcagtt atctgtttaa
     7261 agaacacgat ttcttgggta aaccattcgg gatactcata aagccataca cctttggtaa
     7321 aatagagtag tccgccataa aaaatattga gtgttgagat cgtaataata atggaaggga
     7381 cactaagccg attaacaaat agagcattaa taaaacctaa taatatgccg atggtggaag
     7441 aaataacaaa aacgccggca aatcctacat catatttacc gatcagagtg accataacat
     7501 attgggaaat aatagtgata gcagggaaag aaatatcaat gccgccagac agcaatacca
     7561 caaataaacc acaagctaaa atcattaaca ttgcgtaatt atttacaaca tcataaaggt
     7621 tctcaatagt tgcaaaatca cgggtaaata gggttaataa taggattaaa atcagtaacg
     7681 tactggaaag aatatgatta ttgctgattt tcataaataa cctccgcaat cgatttttca
     7741 ctggaatatg ccggcaagat ttcatcaaca atgcgacctt ttttcattac aattacccga
     7801 tggctgttgt agtaggtctc ttccacttca tcagtcacaa aaataactgc aatgccttgc
     7861 tgagccaatg atttaataat ttggaagatc ccttctttat tggcgatatc gaccccaata
     7921 gtcggggcat ctaaaataat aattttgggg tcgattgcca gccattttgc aatcgaaact
     7981 cgctgtgcgt tccctccgga aagggtatta acaggcaaat ctgaatcgga tactttaatc
     8041 tttaatgaat caatcaaggc ttggctactt gcataagcct tcgaggattg aataatctgt
     8101 aatttatcgg tgattttgtg aaaaatagtc gaaataatat tgtgatgaat cgactctgcc
     8161 ataatcagcc cggtgtgcat tctatcttcc gatacataag caatcccttt ggcaatggca
     8221 tcacggttag tgttaaatat cactttttca ccgtttaata aaatatcgcc ggattgtggt
     8281 tgagtaatgc cgaataaact taggcaaagc tcagtacgcc ctgaaccgag caatcctgta
     8341 agggcaacaa tttccccttc tcgtagcgaa aagttaatct cttgatactg atgaggcagc
     8401 gttaaattgc ggacttccaa tacggttttt ctttgcaaaa aatccggcaa atctaaccgc
     8461 ttgtaatcga tttccagccc agtcattagg aaaccaaggc gtttttcatt catttcacgg
     8521 ataggatatt gcccaaccat attgccatct ttcagcacta atacgctatc ggaaacactc
     8581 attacttctt gcaatttatg actgacaaag atgatgctaa tgcctttgct tttaagtttg
     8641 atgacgacat ctaacagatc tttgacctct tttgcagtaa gtgaggcggt cggctcgtcc
     8701 ataatcaata atctggcatt ttgtgctaac gctcgacaaa tagcgactaa ctgttgttga
     8761 gcgatcggta aatcttctaa tattgcattc agatctagat ttgcattaat gctttgaata
     8821 gcagtgaggg caacctgatg aatgtgatct tgactcaccc agccaaattt tcggtgcagg
     8881 ttaatggcaa tattttctgc cacggttaaa ttggggaaga gggctaaatc ttgataaatc
     8941 acttgaatgc ctttatcaat cgattcctgt ggtgtcagct tggtatattg ggttgcacca
     9001 atttgaattt cagccccttt atccggttga taaacgccgg aaagaatttt gatcaaggtt
     9061 gattttccac aaccattttg accggcaagg caaagtgctt caccataatc taatgagaga
     9121 ttgacttgat ttaatgcttt tatgccgtgg aatgttttac tgatatgccg catcgaaata
     9181 aatgccataa gtgcctcctg aggggaaaat atgggctggt tatcagccca tatgtcagcg
     9241 caaattaata taatttatcg atattttcct tggtgacttt cagtacattg tggaattgaa
     9301 gtagtttttt ctcactatct actttggctt taccaaccgt tgggatctct aatccgtcct
     9361 caattttttc gccttttaat actttggcag cgacagcagc taaagcataa cctgcatttg
     9421 ccgggtcgta ggtaatgccc atcgtaatat caccactctt aattaaattg gctgcttggg
     9481 aaggaatcat cattccgaag acacttaatt tattttttaa gcgtttttct ttcactgcca
     9541 accctgcacc aataggacct tgtgagccaa aagaaacgac cgctttaaga tcggaatggg
     9601 ctttcactaa atcaatggtg gtacggcgtg catcattaat attttcggca acaggcattc
     9661 tgctggtcac ttcaaacata tctggataat gctctttctg gtatttcacg aataaatcag
     9721 cccacagatt atgttgaggc acggttaaac caccaacata aatcacatag ccgccttttc
     9781 cgcccatagc ttttgctact tcttctacat agtctgccgc aaattgtgca ttatcgataa
     9841 tttcaatatc ccaatcggca ctaggttgtc ctactgactc attggtcaat accacaatgc
     9901 cgttctgttt cgcttttttc agtaccggtt ctaaggcatt tgcatcgtta gggacgatgg
     9961 aaatagcact aacttttttc gcaattaaat cttcaattaa ctttacttgt tgtggagcat
    10021 cggtatttga tggaccaact tgataagcat tgatgttgtt atctttacct gcttgcacaa
    10081 caccctctgc catacgatta aaccacggca taccgtcaat tttggagata ttaacaacat
    10141 cattggcaaa tgccgaaccg taacaggcta aagctaaaat acttgaaaat aatgcgtgct
    10201 tgaacgttgg ttttttcatt gttcttccct catacataag aagttatttc actgaatatc
    10261 actcacagag cttgatatcc cttctctaat agaaacagca ctattaaagc tgtttgtatc
    10321 ttatgctttt gagtgagaga aaaacaggta actttttgtt atcgatatgg aaaattctgc
    10381 tatgcaaagt aaagtgagat caagatcaca tttcactgtc tttacgccgt tctaaggttc
    10441 taaattcaga gggtgacagc ccggtatgct ttttgaaaat tttggaaaag tagagagaat
    10501 cctcatagcc taaggatttc gcaatattag agatagagat gttagagaaa taaagcaatt
    10561 ttttggattc ggaaatgcgt tgtaattccc gccattgcac taagctgatc cccagcgatt
    10621 gcttgaaaag atgtgagagg cgagatggcg ataaaaatac tttttctgcc attgcttcta
    10681 agctctcatt tttagccaaa ttcgttaaga ttaaatcaca aactgtcaaa atgcgttgat
    10741 caatgacagg aataacctca attttctcgg cggaaataca tttcataagt aagtattcca
    10801 acaaacttgt tgcaatatct tctttaaaaa atttactgga tttaagttct aattcaattt
    10861 tactgaaaag ttggctgatt tcctgaaagt aacggtcatc gctaatggtg atccgcccta
    10921 ttttttcttc catatttgac caattcagcc atttattcca ctttggatta ggcagaaaat
    10981 agacccattt atagtgccaa tattggcttt ctgggtgacg atggtagtgc tgaactgcat
    11041 tgggtgtaaa taggagtaat tgacctcgat gggctgaaaa gacgtgttta ccatcagaaa
    11101 cagagccatg cccaaaagta gttaattgca acatataacc ttgcatccct tgttgcctat
    11161 cgacaataga atcaagatag ttgcctttct cacattgagt aagaccggcg atgaattcaa
    11221 ggtcaaatgg ataagtcggt gaaagcaaag aaaggttttt atacatgact atcagtattt
    11281 accaaaaaat aataaaaaat aaccgcttgt ttatcattac taatgaacgc ccagattagt
    11341 aaaccaaatg taattttacc aatattaatt agcaaagatc ctaatagtgc ttaggatatt
    11401 ttactaactt taaggcgata cttgagccta aaatcacaat acaagcaaag cccatttgaa
    11461 caatggaaat acgttcgtcc agtaaaatat aagcaatgat ggctgttgaa accggcatta
    11521 atagttccaa tacttggtag gttatcagtc cttgggtttg gataatgtga aaggttaata
    11581 ccattccgat cataatcgca taaataccag cagccatcag agagaatagt agccagtttg
    11641 gtgcagtaaa aagctcatta aatttacctg cttgttggct aagtaataga cttgagagtg
    11701 aagtagtcaa agatgttaca caacttagtg taaatacgtt cagctctcga gcgaatttta
    11761 caactaggtt ttgtatgtta cggataataa ttgacagaaa taagaacata gaaccaagaa
    11821 taaatccttc gccaatcgag agtgttttcc cgtgccaaat aaatccaagt gaaccgatga
    11881 tcgttaaaat tgagccgaac cagaaagctt tgcttttaat gcgttctctt tcatcttgaa
    11941 agaatatggc ggcaataatc acgccaaatg gcattgccaa taccccaaaa atagaggcgg
    12001 taacagcatt tgtaattttg acccctttta gccaaaaata catatttgcg gacatcatta
    12061 acccgacaaa tagagaaatc gcaatcaatt ttggagtttt aatcagctga gacagcgatg
    12121 tgcggaatct ccagaaaata aaaaccaata aagtgagtcc accaattagg aagcgtacac
    12181 cgttattatt taatggatca aaatgcaaac tgagaaacct aagcagtaca atatttagac
    12241 caataccgaa gatataaagt aggttaatta agactaattg ataaggggaa agcatattca
    12301 aaaaaacaaa aatggctcag ctgtaaaagc tgagctttaa aatctaataa agtatggtta
    12361 taacaataat tttattaacg atgggttata acgttttttc gcttataggc gtgatatttg
    12421 aggctgaggc acctcgctct ccttgaacta attcaaactg tactttttgg ccgactttta
    12481 aagagcgata accttctgct tgaatttcag aaaaatgagc aaaaatatct ccttcacata
    12541 catccgatgt aataaaacca aatcctttta cattgttaaa ccatttaaca ataccgatat
    12601 ccatagaact ctccaaataa tgaatgacga tatttggatt gtaaataaaa cgcgtaaaag
    12661 ctcaactatc aaagtgtaaa aattagacga agatcacaaa attatttaaa aaatagtagt
    12721 ttctagcttg atattaccat tttctatcac aatggctttg ccgaactttt tcaccattgc
    12781 ttcttttgct ttattctcat ctaaagtata aacaggcgtg ctgtttaaaa aactatttaa
    12841 tccatcagcc aataccggca aaaacatttg cagttctgct tgatatttag ccggtgtagc
    12901 agaccagctt aacaatctga catctttaag aaataatgcc cctttttggg gatcgtaata
    12961 aggcgtggta tccatattta actggataga cgcatcatat ttcttgcctt tcgcttttaa
    13021 aagcccatca acaacaccgg aaatagccac ttttttctct tcggttctac caatttggct
    13081 tgtcagcgaa tgcagatggt aatccaattc aaataaatgc ggaacgccca ctttatcctg
    13141 taaagggatt ttttcagcta atttggtggc taaatagtcg ttgatttctt gctcgctaat
    13201 gctgagtaaa ttaccgttag cagagagcat agccattgag acaacgcata cagcagcgaa
    13261 tttacgtaaa attttcataa tttacccttt aaaattaggt ttaatccatt aaacaggtta
    13321 gaatacattg ggtctatcat agactctctt tttcgtttag gacagcaaaa aatgaaaaaa
    13381 ctcttattat gcgttggcat tttagtgtta gctgcttgct catcaaccgg tgtgggtggc
    13441 agtattggag ccggtggtgg ctctaacggc gttggaatcg gcttaggtgt cggcaccgac
    13501 tttcgattct aattggtaaa tttttggcgg tttttgaccg ctttcacgaa ctgtttattt
    13561 gtggattaaa atgaagtacg aattaaaaac aacaagtggt aacgctcgtc gtgggcgttt
    13621 aacttttaac cgcccgaaag gcgaatttca cgttgaaaca ccggcattta tgcctgttgg
    13681 cacttatggc acggtaaaag gtatgactcc tgaagaagtg aaagcgacag gggcacaaat
    13741 tttattaggt aacaccttcc atttatggtt aagaccgggg caagaagtga tgaaaatgca
    13801 cggtgatttg cacgatttta tgcaatggca cggtccgatt ttaaccgatt ccggcggttt
    13861 ccaggttttt agcttaggca aactgcgtaa aattaaagaa gaaggtgtaa ctttccaaaa
    13921 cccgattagc ggtgagaaaa ttttcctttc gccggaaaaa tcaatggaga tccaatacga
    13981 tcttggttca gacattgtca tgatttttga tgaatgtacc ccttatccgg caacctttga
    14041 ttatgcaaaa aaatcaatgg aaatgtcgct tcgttgggcg aaacgttctc gtgatcgctt
    14101 tgatgagctt gaaaacccga atgcgttatt tggcattatt caaggtggta tttatgaaga
    14161 acttcgcaaa gtctcggtgg aaaaattagt tgaaatcggc tttgacggct atgcagtcgg
    14221 tggtttggcg gtaggtgagc cgaaagaaga tatgcaccgc attttagaat atgtttgccc
    14281 gcaaattccg gcagataaac cacgctattt aatgggagtg ggcaagccgg aagatttagt
    14341 cgaaggggtt cgccgtggta ttgatatgtt tgactgcgta atgccaaccc gcaatgcccg
    14401 taacggacat ttatttgtga ccaacggcat tgtgaaaatt cgtaatgcga aataccgtaa
    14461 cgatattaca cctttagatc ctgaatgtga ttgctacact tgcaaaaact atactaaggc
    14521 ctatttatat cacttagaca aatgtggcga aattctaggg gcaagactaa acaccattca
    14581 taatttacgt tactatcaac gcttaatggc agaaattcgt caagccatcg aagaagatcg
    14641 ttttgatgat tttgtcgtgg aattttatgc tcgaattggc aaagaagtgc cacctttaca
    14701 atctgaagta aacggtcaga aataacaagg agtatatatg caacaacttg aaccacaaac
    14761 ctttgcaagc tgggcagagc cgatcgatat gctttatgct tgccacagca aagtaaaaag
    14821 tttctgcaaa cagctacaaa ttttgccgga ttaccttgag aaaaacgggg taaaccaagc
    14881 ggtcaagaat gatgtgcagc agattttgaa ttacttcaac atttctgccc ctttacatca
    14941 cgaagatgaa gaagatgatt tcttccctga gcttattaag gtgcaaccac aagctcaagc
    15001 agaggtagac gaactggaac gccagcacgt tcatttacat aaaaattggg acgatttgtc
    15061 ggcacagctt gaagatctgc tcgcaggtaa acgtgaaaat gtggatagag acttaattga
    15121 gcgttttgtg gcaggttatg atgtgcaatt gccattgaag aaccgctttt tgagctagga
    15181 cgagagcatt tagcagaaga aaagctctca gcaatgggta aaattatggc ggatcgccgt
    15241 aaattataat tgcgatgaat aagacgaacc ttgagttcgc cttttgtgta ttgaagatga
    15301 attattcttt agatttaacc gactatgcct gcccgttacc tttgcttatg gcaaaaaaag
    15361 cgatgaacga tcttaaaaag ggcgatagct tggaaatttt actcaatcag cagagtagcc
    15421 ttaccgattt tgaactgctt gccaaagagc aaggttggct ttgtgagcta caagcggttg
    15481 aaaatcgggt gatttttacc attgcttaat ttgaggtgca tttattgcta cccagtaatg
    15541 tttttaaccc ttcactaata agcccttgcc aagctaaata accgtgagag gttgattgtt
    15601 cgacataagt aaccggataa cctttagcga gtaaaacatc ttttaaatgg cgagaagttt
    15661 ctaaaatagc cgatttcccg ctttcataaa aacctgcact gatgaaaaaa cagagtggta
    15721 atttttcttt ttggataaat tgttgagcaa tatagtggct ttgttcacta ggtgtgcctt
    15781 tgggttgcca ccaaaatgaa ccggatagaa tcaatgcttt actaaataca ttaggatagt
    15841 tgagtacggt gtaagcagag gatagcccgc catagctaga gccgccaata attcgctcct
    15901 ttgtttttat attgagctgt ttttcaacaa aaggtacaag ttcttttgcc aatacttgcg
    15961 taaatatggg attggcaggt agctcgacac gtcttgattc actcgatgga ttttcgataa
    16021 acaccgctac agtaggcaga atcactttct gagcgatcat attatctaaa atggttttag
    16081 ttggcactcg ttcggtatat tcaacaccgt caaataaata gagaaccgca tagttttttt
    16141 ctgcactaaa accgtcaggc agatagacga ataatctgcg tttattgccg agtgttgcac
    16201 tctcaaaaat caactgctgc agtttacctt ttgcaatatt tggagcttca gtcaaaaaag
    16261 attgagtagg tgcgtttggc aatttaagta gcgaagcgta gttgaattta tcggtattat
    16321 gaatattttg tccgattttc tcgaagtatg ctgttttatt gagtggatcg gcttgagccg
    16381 tagccagtaa cgctctgcgt tgggtattct catcaacggg caatgtcggc acatctggag
    16441 ctaatttgta ttccactaaa gtgtcattgg gcactatata acttttatac catatatccg
    16501 tttcaccaaa gcgttgcata aaatcgtgtt cagtactcac accgccccaa atacggacat
    16561 ttttcgttgc tccacgccat aaaaaagtta cacggctttg ctgttcgtcc aatggttcaa
    16621 tcaatggtgt gccggcttgt tttgctttat cccaaaaatc gttaattaaa gcggtctgtt
    16681 tttctggatt ttttgcaatt ttttggctga gttcttcaag ctgtgtattt tcaattactt
    16741 taggtggagc aatttgtgcc gagattggaa tatgccgctc aatcgttaag gtaaaatctt
    16801 ggtctgaaac ggttgcacca ttcgctagaa tagaaaaagt agctgtgccg cttagttctg
    16861 atttaaacat aaaatcttgt tcaccaaaga cattttgagc cagcaggcga gagctttggc
    16921 aggaaaaata atcgacaagg agagtggctg ttgagccttc tgaatcaatt tgctttgcac
    16981 aaaatcattc tgtttaagct caatggttat attgttagca taaagcacag atgaaaccaa
    17041 aaaagtaaga atacaagcgg tcgttttttt catatttttt gcaaaagttt aagccctcat
    17101 ttgagggctg ttgagattaa aaatgatagt ttaacgttgc acttaaattg cgatcttttc
    17161 catagaaaca ggaaaaatta ttggcacagc ttgcgacata ttttttattc gtcaggtttt
    17221 gtgcgttgag ctgtaagttt aagttaggca taaaatcata agctagcatc atatcgtaaa
    17281 gtgtgtatgc cggtacggta aaagtatttt ggttatcgcc aaaagtcgtt cccatatagc
    17341 gtacacctac accggcggtc agcttatcaa agaatttata ttttgcccaa agagatgctt
    17401 gatggcgagg cactccccac tgcgtttttc caatcgtcgt gccatcttta tctgcagtaa
    17461 tctctttttt taagtaagca taagaaggcg ctattgaaaa tttatcggat aattgctgat
    17521 ttaaactcac ttcaattcct ttggtttgca cttcaccaat ttgctcataa gagcgggttt
    17581 gccattgata attggctaaa tctttttgtg taattttaaa tcctgctaag gtcagtaagg
    17641 tgtcttgggt aggttggtat ttcattccca cttcccattg cccagcagtt gttggtttta
    17701 agaaatttcc ttgagcatct ttttcagccg atggcacaaa agaagtgctg tagctgatat
    17761 acggagcgat accgttttca aagttgtaaa ctacgcctgt acgccaagta aattttcctt
    17821 cttggttatt ctctgtttta ctgttcaaac gatcttggtt gctgtttttt gctcgatcgt
    17881 aacgaccgcc taacaggaag tcaaaattac cgatttctat ttgatcttgt agataaaccc
    17941 caagttgttt taaatgcttc acttcacttg aaaataagct aggctcagta acggtcacgc
    18001 cataaacagg gttctgccaa tcaaaatcag gggcaatccc catatagtta tcaagatctt
    18061 cacgcactcg tttataatca ataccggcta acaaggtatg atttatattt gctgtgctaa
    18121 atacccattc taattggtta tctaagttga tttcttgggt tttgacatcc caacggcgag
    18181 ctctacgttc taaaaccgaa ccgacatcgc cccaataaac tagatttttg aaattctctt
    18241 cgccattatg gtaacttgca ttttggcgga acgttaggtt tggcgtaaat ttatgtgaga
    18301 aattgtaacc tacttgcatt tgttcggctt ttaaaccgtg atagttcaga tcgctgagga
    18361 acatatcata gggtagtttc ttcccgttta cgctattaat cgttccttct ttcggtaaaa
    18421 agttacgatc accggctttc ggtttttttg catagtaagc gtaaacatta agttctgtgt
    18481 ttgtagtcgg tttccataaa atgcttggag caaaagcacc gcctttttct tttacaaatt
    18541 gggtattcca gtttgttcgt tctaattgac cgattaaacg agcggataag gtattggaga
    18601 gattttcttc aatatccagc ccgatttggt atcgttgatg gtttcccacc acaaattgca
    18661 aatggcgatg tgggttactg ccggcttttt tggtgataat atccattacg ccaccgggat
    18721 tagcttgccc gtataaaatg gagtttggac ctttaatcac attgatactt tctaagaaga
    18781 acggatcgat ttcaaatgca gtttggtagc gagaaccgtt taaataggtc ggaattgtac
    18841 tgccatcact tttattgcca atgcctcgaa tggagatttc gataagcgaa ttgttaccac
    18901 gatagccacc catcataccg gaggtataag ccactgaatc ggtaacagaa cgaacagctt
    18961 ggtcatgcat taaatcatca gagacaacat tgatactaaa aggtgtacga gccaaagagg
    19021 ttaatgtttt cgttcctaca gtcgtataaa caggaatata gccggtggta gctgccaatt
    19081 tctctttgac ctcaatagca tttagttctg cttgagaggt tgtttctgct aatacttgag
    19141 gagctacaat cgctaaagtg attagagaaa gtgaatattt ttttattttc attagtttat
    19201 ccttaaataa gaatgattat tgaata
//
LOCUS       DANLUT010000024        19216 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLUT010000024 DANLUT010000000
VERSION     DANLUT010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19216
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            31..714
                     /locus_tag="PXB38_000762"
     CDS             31..714
                     /locus_tag="PXB38_000762"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL5353110.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGIFDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXB38_000763"
     CDS             complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXB38_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL5353111.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXB38_000764"
     CDS             complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXB38_000764"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL5353112.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIKADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            2268..3830
                     /locus_tag="PXB38_000765"
     CDS             2268..3830
                     /locus_tag="PXB38_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5353113.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNSIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(3895..4746)
                     /gene="tsf"
                     /locus_tag="PXB38_000766"
     CDS             complement(3895..4746)
                     /gene="tsf"
                     /locus_tag="PXB38_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL5353114.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(4842..5561)
                     /gene="rpsB"
                     /locus_tag="PXB38_000767"
     CDS             complement(4842..5561)
                     /gene="rpsB"
                     /locus_tag="PXB38_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL5353115.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASEAVKLAAVDSQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            5940..6968
                     /locus_tag="PXB38_000768"
     CDS             5940..6968
                     /locus_tag="PXB38_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5353116.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLAQKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEYGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSKLVKGWGTFTADTIKLEDIAKHYEAALKLVDEVK
                     FDDFSEKK"
     gene            7091..8737
                     /locus_tag="PXB38_000769"
     CDS             7091..8737
                     /locus_tag="PXB38_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5353117.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            8747..9757
                     /locus_tag="PXB38_000770"
     CDS             8747..9757
                     /locus_tag="PXB38_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5353118.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVSKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            9767..10393
                     /locus_tag="PXB38_000771"
     CDS             9767..10393
                     /locus_tag="PXB38_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL5353119.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAKSKGLGEVMIERLFKAYFSDNLILAKRTQLIDLALELGLDRDEVAQLLTGDDFG
                     HEVREDERMAHRYGINSVPFFVIDEKLGVSGAQPPKVLLDAIKQALQK"
     gene            complement(10455..11945)
                     /locus_tag="PXB38_000772"
     CDS             complement(10455..11945)
                     /locus_tag="PXB38_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 family protein"
                     /protein_id="HDL5353120.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGLVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRTTISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDLPDSVLGQLGNRIQHALRAFTPCDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAM
                     GERDAIVKQDELYHHYSQYVNNQSAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(12004..13239)
                     /gene="rhlB"
                     /locus_tag="PXB38_000773"
     CDS             complement(12004..13239)
                     /gene="rhlB"
                     /locus_tag="PXB38_000773"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL5353121.1"
                     /translation="MSNHLTEHRFIDFPIHTNVLNALNSKGFEFCTPIQAKTFPITLN
                     GNDIAGQAQTGTGKTLAFLIATFNHLLNNEIETAKNQPRALILAPTRELAVQIGADAQ
                     LFLPHCDLKLALAYGGDGYDKQIQAIEKGVDILVGTTGRVIDYVKQGIIHLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPVPTERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFANTKHKCEEIWQYLAAD
                     GHRIGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(13316..14038)
                     /gene="recO"
                     /locus_tag="PXB38_000774"
     CDS             complement(13316..14038)
                     /gene="recO"
                     /locus_tag="PXB38_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL5353122.1"
                     /translation="MTTDQWQRAFVLHRREYSESSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLVRWSGKGDLKTLTKAEPAALTLPMETAALYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCMTELATQHQIEPILRTFEFHTLKALGYGVDFTHCTATGLPID
                     PKMSYQFRESEGFIASLLQNNNSFLGCDLLAFAQLDFSEKQTQQAAKRFTRIALKPYL
                     GSQPLKSRELFQSILPNKVKSG"
     gene            complement(14476..15393)
                     /gene="era"
                     /locus_tag="PXB38_000775"
     CDS             complement(14476..15393)
                     /gene="era"
                     /locus_tag="PXB38_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL5353123.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILEQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(15496..16170)
                     /gene="rnc"
                     /locus_tag="PXB38_000776"
     CDS             complement(15496..16170)
                     /gene="rnc"
                     /locus_tag="PXB38_000776"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL5353124.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKSNEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(16216..17175)
                     /gene="lepB"
                     /locus_tag="PXB38_000777"
     CDS             complement(16216..17175)
                     /gene="lepB"
                     /locus_tag="PXB38_000777"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL5353125.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(17262..19055)
                     /gene="lepA"
                     /locus_tag="PXB38_000778"
     CDS             complement(17262..19055)
                     /gene="lepA"
                     /locus_tag="PXB38_000778"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL5353126.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEMDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKIPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTAELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     VNNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
BASE COUNT         5641 a         4088 c         3537 g         5950 t
ORIGIN      
        1 attaatttta ctcaaagcta aggagtcatt atgcaattag tatttatccg tcacggtttc
       61 agtgaatgga atgctaaaaa cttatttacc ggttggcgtg atgttaattt aacagaacgt
      121 gggattgaag aagcaaaatc tgccggtcaa aaattaaaag cagccggttt tgaatttgat
      181 attgcgttta cttcggtttt aacccgtgcg atcaaaactt gtaacatcgt attagaagaa
      241 tcagaccaat tatggatccc tcaagtgaaa aactggcgtt taaacgagcg tcactacggt
      301 gcattacaag gtttagacaa aaaagaaact gctgaaaaat atggtgatga acaggttcac
      361 atctggcgtc gttcttatga catctctcca ccggatttag acccacagga tccaaactca
      421 gcacataacg accgccgtta tgctaactta ccaaaagatt taattccaaa tgcagaaaac
      481 ctcaaaatca cccttgagcg tgtgttacca ttctgggaag atcatattgc acctgcatta
      541 atttcaggta aacgcgtatt agttactgct cacggtaact cattacgtgc attagcaaaa
      601 cacatcgaag gcatttttga tgcagacatt atggacttag aaatcccaac cggtcagcca
      661 ttagtgtatg aactagatga caacttaaaa gtaatcagca aacgttactt ataattggta
      721 aatttccgat aaaaaataac cgcttgtagt gcaacacatt acaagcggtt attttttgtt
      781 aattttttgc aaatggcaaa gaacaaaaat aaaggcgaat catacattcg ccttattgtt
      841 ttaaagtaga ttagaaatct aacaactctt tctcttttgc tgctaatact tcatcaactt
      901 ttttaatgaa ggtatcggtg attttttgaa tatcttcttc agctttgtgt tgttcgtttt
      961 cgctgatttc tttatctttt aataacgctt tgatttggtc attagcatca cgacgaacat
     1021 tacgaattgc cactttgcct tgctcacctt ctgctttaac gattttgatt aaatcacgac
     1081 gacgttcttc cgttaatggt ggaagcggaa cacgaatggt tgtgccggca gaagatgggt
     1141 ttaaacctaa atctgaggtt aaaattgctt tttctaccgc agagattaaa gatttatcaa
     1201 atacgtttac cgctaaagta cgggcatctt cagctaccac gttcgctact tgacgtaatg
     1261 gagtcgcaga gccgtaatat tccacttgaa taccgtctaa taaagaaggt tgggcacgac
     1321 ctgtacgaat tttcgcaata tgccctttta aagcctcaag gcttttttcc atacgatctt
     1381 gggtatcttt cttgatttcg ttaatcattg attttttatc cttttattta gtaactgaga
     1441 gttaaacaga gaaaattaat tattcagaaa tggttgtacc ttcttcagta ccgaatacca
     1501 cattgcgtaa cgcccccggt ttgcccatat taaagacacg aattggcatt ccgtggtcac
     1561 gagcaagcgt gaatgctgct aagtccatta cttgtaattc ttgctcaata acttgcgcat
     1621 acgttaattt attatatagt tttgcatctg cgtattttgc tgggtcttta tcataaacgc
     1681 catcaacttt agttgctttt aataccacat cagctttaat ttcaatacca cgcaagcaag
     1741 cagctgaatc ggtggtaaag aacgggctac ctgtaccggc agagaaaatc accacacgtt
     1801 tttcacgcaa cattttaatt gcttcagacc agttgtaagt gtcgcaaatc ccatttaatt
     1861 ggaacgcaga cattaattta gcatttacct ctgcacggtg taaggcatca cgcatagcca
     1921 aaccgttcat tacggtggca agcataccca tatggtcgcc cactacacgg ttcattcctg
     1981 ctttggctaa ttttgcacca cggaataagt taccgccgcc aagtaccaca ccaacctcaa
     2041 cgccttcagc aagtaattct ttaatctcta acgccatacg atccaaaata gacgggtcga
     2101 taccaaaacc ttcactgcct tgtagggctt caccacttaa tttgagaaga attcgcttat
     2161 aaataggttt gctcatttta attgcctctt aactgtatgg actaaacaca aaattacgtt
     2221 attatagaac aatccaatat aacgataaac taaaaatatt cactacaatg aaatccaaac
     2281 aacttttcgg cattcttgtc gctatttcgc tggcaactgc tgctagctgt ttaatgctaa
     2341 tcggatcagg cttttttcca aatccgagta tctttgaagt cattttgggc gtattcctca
     2401 tcatcgctct tgccagctct aaatggactt attatttact cttactgcca atcagcatcg
     2461 cttatgcaat ttataccccg gttgggataa aattcggtaa accgacttac gagtatatcg
     2521 cctctatttt tgctaccgat atgatggaaa gcaaagagtt tattgctcaa ctgccgattt
     2581 taaatattgc ggcgggcatt gcgattgtac tagcggtcat tttttatcga aaaattacca
     2641 atcgctatca aatccgtttt ttacgcaata aaacattcgt gatttcggct tttgtattaa
     2701 tgctgttttc ccttgcaccg tttaaatttt ttcaggagtt ctacaattcg agcctaaagg
     2761 taaagaaaga attggaagtg ctgaacaatt taacgctaga ttcacaatgg ggacaatcaa
     2821 ccctcagctc aacttcaaac tacgatgatt atgtactgat tatgggcgaa agtgcgagaa
     2881 aggattatca ccacgcctat ggctatccgg ctgccaatac gccttttatg agttcggcaa
     2941 aaggaacctt gattgacggt ttaacctccg gtggcacaaa cactatcgcc tcattacgct
     3001 taatgctcac taagcccgat acggaaaaat gggaagcaaa ttatgggtta accttaattg
     3061 atttaatcaa atctaccggt atcaagacct attggatctc aaatcaaggc tatttgggca
     3121 attacgatac gccgatttcc tctatcggta ataaaagtga tgtcaaaatt ttcactaaag
     3181 ccggcgattc attaaatacc aatgtgagcg attttgaatt gttaccgcat tttgctaaag
     3241 tgattgaaga acctgctcaa gggaagcgtt tcatctttct gcatttatat ggctcgcatc
     3301 ctattacctg cgatcgtctc accgattacc cgaaaatgtt tgacgatgac aaactgccaa
     3361 aacgctactt taatgtaaat tgctacgtgt catctatcaa gaaaaccgat gaattgctga
     3421 aacgggtata tgatttgcta gtgaaaaacc aagaaaatca ccagcgttca ttctcaatgg
     3481 tttatttgtc tgatcacggt ttatcgcacg aggtttcaaa agagaacatt gttatccaca
     3541 atggaaagga tagaagtaaa ttacactacg atattccgct gtttaaaatt tcaagcgatg
     3601 atacccaacg taatgagtat aaagccttta aatccggctt aaacttcact aatagtattg
     3661 cgaattggat tggtatcgaa aatccgttat tagataaaga aattaatctt tttaacgaac
     3721 aaaacgataa aagtgattat gggctaaaga aaatcattga aacgcagtct actgtagaag
     3781 atccagctgt tcctattcct gaaagctact tatataaagc gactaattag caaaagtaag
     3841 taacaaaaaa agcaggcttt aagcctgctt ttttagtttt tagtatcaga aaaattaagc
     3901 gttaccgcca gtgattttcg ctacttctgc tgcgaaatct tcttctactt tctcaatacc
     3961 ttcacctact tctaaacgaa taaagttaga aactgaagta tttactgatt ttaaatattg
     4021 acctacagat tgagatggat ccattacaaa cggctgaccg gttaatgaaa cttcaccggt
     4081 gaatttagcc atacggcctt caaccatttt ttctgcgatt tcttttggtt taccagaatt
     4141 catcgcaatt tcaatttgaa tttcacgttc ttttgctact acatcagcag aaacatcttc
     4201 tgggtttaca aattcaggtt tgcttgcagc aacgtgcatt gctactttct taagctcatc
     4261 ttcagagcct gcacctgcta ctaatacacc aattttcgca ccgtgtaagt attgagcaat
     4321 aacttcgcct tctaagtatt gaacacggcg aatgttcata ttctcaccga ttttcgcaac
     4381 taatgccgca cgtttttctt caaattgtgc ttgtaatgct tcgatagttg tacctttatt
     4441 tgcaactgca aaatcagcaa cttcgttcgc taattctaag aaaccggcat cttttgcaac
     4501 gaagtcagtt tcacagttca tttcaactaa tacgccaaaa cctgaagcga cacgagcaag
     4561 gattacacct tcagctgcaa cacgacctgc ttttttagcc gctttcgctt gaccagattt
     4621 acgcatatta tcgattgcta attcaatatc accgttcgct tcaactaatg cttttttaca
     4681 ttccatcata cctgcgccgg tacgttcacg aagttcttta actaatgatg ctgtgatttc
     4741 agccatttta aattcccctt atttgatatg gtaaaacagg ctctcacctg cctagaaatt
     4801 tcattgttta gggcaggtta aaacctgccc cctcaactga attattccgc agaagcttct
     4861 tctgctactt caacagtttc aacaccgcga ccttctttga ttgcagcaac tgctgaatct
     4921 aagtaaagtt ggatagcacg tgttgcatca tcgttaccag gaatgatgta gttaacgcca
     4981 tctggagttg agttagtatc aacaatcgca aataccggaa tacctaagtt gtttgcttct
     5041 ttaattgcga tatgttcgtg atcagcaccg ataacaaaga ttgcatctgg taaaccgttc
     5101 atatctttaa tgccgcctaa gcttaactct aatttctcta actcacgcgt acgcattaac
     5161 gcttcttttt tagtgatttt gtcaaaagta ccgtcttgag tttgagtttc taaatctttt
     5221 aaacgcttga ttgattgacg aactgttttc cagttagtca acataccacc taaccaacgg
     5281 tgattaacgt agaattgttg gctatctaca gcagctagct taactgcttc tgacgctgca
     5341 cgttttgtac ctacgaataa aactttaccg ttgttagagg caatacgagt taattccgct
     5401 aatgcttcgt taaataaagg taatgttttt tctaagttaa tcacgtgaac accattacga
     5461 gcaccgaaaa tgaatggttt catttttggg ttccaataac gagtttggtg accatagtga
     5521 acgcctgcgt taagcatatc gcgcatagaa acttgtgcca taagaatttt ccttcaaagt
     5581 tgtttgtctt accacttatg taaggcaaga cggggtttag cctccacata tcctagaaaa
     5641 tcgatctttt tataaagaca ccccaattcc tagcttgcaa tatgtgtgtg ttttagtgtt
     5701 aaaaaataaa tgtttatgtt ttctatctta acgaagacaa aaaacggcgt gtattatgcc
     5761 aaaaaacaaa cagcttgcca aatattttct ccattttgcg agcttatcat tttaagaaat
     5821 gctaaaagcc atcatttaaa aaatcaataa caaaaaccgt tctcattatt gactaaaaaa
     5881 atggggaggt ttagaatgtc ttccattctg ttatgaaaac ctgtctgaag gagactatca
     5941 tgaaaaaaac actttctgca cttgctattg ctgcagccac ttttacatca acttcaacgc
     6001 ttgctgcaaa tgaagtgaat gtttattctt accgccagcc ttacttaatt gagccaatgc
     6061 taaaaaactt tgaaaaagat actggcatta aagtaaacat catcttcgct gataaagggt
     6121 tggttgatcg tgtaaaacaa gaaggtgaat taagtcctgc tgatgtgctt ttaacagtag
     6181 atatttcacg cgtaatggaa attgttaacg ctgatcttgc acaaaaaatt gactctaaag
     6241 tgttagaaaa aaatattcct gcacaattcc gtgactctaa cgaccaatgg tttggtttaa
     6301 ccacacgtgc tcgtgttatc tacacgtcaa aagatcgtgt aggtaaatta ccagcaggct
     6361 ttgactacct agatttagct aaaccagagt ataaaggtaa agtctgcgtg cgttcaggca
     6421 aaaactctta caatgtctca ctattcgcgg cgatgatcga acattacggc attgaaaaaa
     6481 ccaaagcatt cttagaaggc ttaaaagcga acttagcaca aaaaccacaa ggtggtgacc
     6541 gtgatcaagt aaaagcaatt aaagaaggca tctgtgatta ctctatcggt aacagctact
     6601 actacggcaa aatgttagat gatgagaaac aaaaatcgtg ggctgaagca gcgattatta
     6661 atttcccgag cggtgaatac ggcacgcaca aaaacatcag cggcgttgtt attgcaaaac
     6721 actcaccaaa caaagcgaat gcagtgaaat taattgagta cctcagcggc gaaaaagccc
     6781 aaggtttata tgcggaactt aaccacgaat atccggtaaa agaaggcatt gagccgtcta
     6841 agctggtgaa aggctgggga acatttaccg ctgataccat caaattagaa gacatcgcca
     6901 aacactacga agcggcatta aaattggtcg atgaagtgaa attcgacgat ttctctgaga
     6961 aaaaataatc aaccgataag cggtcatttt tccacaaaaa tttgcaaaat tttgttaaaa
     7021 tacaaccgct tgcaaaagga cgcattttgc gtccttttat ttttttatga aataacaggc
     7081 ttaaagaaaa atgcgatcac aattttgctg gaaaagtatt gctgccctaa caacttttat
     7141 cgttttgctt cctcttattg caatttgcta tcacgcattg caaggggata atgaaaacct
     7201 tgctcacctt tggcaaacaa tgttgccaat ctatcttaaa aactcaactt tattagtatt
     7261 aggaaccgtt ttccttgcac tgatttttgc tctgcctacc gcttggattg tggcaaatta
     7321 ccgtttttgg gggcaaagaa ccttacaatg gttactttgt ttgcctctcg ctatgcctgc
     7381 ttatttaatt gcctatttat ataccgattt attagattac tcaggtgctt ttcaaggctg
     7441 gctgcgtagt atttttggct ggactcatcc gcaagattac tggtttcctc aaattcgtac
     7501 attgtatggt gcttgctttg tgcttgcgtt agtactatat ccatacattt ttttattagt
     7561 gcgagttgcc ttattagaac aatctgaaaa cttaacacac agtgcaaaaa tgctcggggc
     7621 ttcgccctct cagttgttcc gtcgaattac gctgccatta attcgacctt ctgttgccgt
     7681 aggcattgca ttagtggcaa tggaaacgct tggcgatttc ggtactgtgg cctattttgc
     7741 cgtgccaaca cttactacgg caatttatga ttcgtggcta ggctatcacg atcttggtac
     7801 tgccagccag attgcgatct ttatgttgct aatgattttc ctgtttttaa gtttagagca
     7861 atatagtcgc cgtaaacaaa aaagctatca acgtggctat gaaaagaaat cagcctttaa
     7921 atttttaact ggttggaaat tagcattagc ccttgcttgg tgctggggtt tattggcgtt
     7981 agcctttttc attccgtttg gcaggttgct ctattgggca tacgactatt tcgagcaagc
     8041 gtggaattta gactttgtcc aattttcgct taatagtttg aaagtatcga tcatcgcctc
     8101 cgtgataacg gtactgattg ctctacttct gcatttttct aaacgtttga atacccgcaa
     8161 aattttagtc aaaaatgacc gcttgtcatt acaacttgcc tcactgggct atgcggttcc
     8221 tggcacagta ttagcgatcg gtttactttc gcctttaaca tttgccgatc atcaactcca
     8281 tgcttggcta aaaagccttg aattatcacc cgttggattg attttttcag gctcactctt
     8341 tgcattagta ttagcttata ccatccgatt tttagcaatg gcaattggca gccttgaaac
     8401 ttcgctaaat aaaatctctc catcgctgga tatggcgagc caaacgcttg gtaaaaatgg
     8461 ctcagcaatg ttagtaaaaa ttcatatccc tttaatttat aaaggtattt taactgcagg
     8521 attaatggtc tttattgaga gtatgaaaga gctaaatgct tctctgctac ttcgcccatt
     8581 taattttgat acactcgcaa cctatgtgtt tacctttaca tcagacgagc agcttgagcg
     8641 tgctgctctg cctgccatcg tattggtgtt agtcggttta ctgcctgtta tttggcttac
     8701 cagatccctt atttcgcaat ctgaaaaaga aagataaagg aattttatgt ctgttttaac
     8761 tattaatcat ctcaacctca atttcggcag tacaaaggtt ttacaaaatc tccatcttgc
     8821 tgtgaatcaa aatgaaatta tctgtttgct aggtgcaagt ggctgtggga aaactacact
     8881 gctcaaagcc attgcaggtt tattgccaat tgagcagggc gatattcatt tagcgggtga
     8941 atgcctaaaa agcaaagccg tggaagagcg acaaatcggg ctgattttcc aagattacgc
     9001 tctttttcca cacttgacgg tagccgataa tattcaattt ggcttatcca aattgccaaa
     9061 agtacaacaa aaagcaatta ccgaaaaaat gctttcagtt gtgcatttac aaggctttga
     9121 aagccgtttt ccacacgaac tttcgggcgg gcaacaacag cgtgtcgcta ttgcccgagc
     9181 attagcctgc cagccagaat tgctactgtt agatgagccg ttttccaata ttgacagcca
     9241 aactcgctat gcaatgattc aagagatcaa gcaaatctta aaaagccaaa atgtgcccgc
     9301 tatttttgta acccatagca aagaagaagc ctttgcattt gccgataaaa ttgccgtgat
     9361 ggatcaaggg aaaattattc aatttggtaa gccaaacgag ctataccatt ctccagttaa
     9421 tccatttgtg gcagattttt taggtggcac aaactatctt aactgtaatg taacggaaga
     9481 caacgtgtta tgcagcccta ttggcgagtt ccgactcttc cctgaaatga acgttcagaa
     9541 agggcgttac cgttggcttc ttcgcccaga acagattatc ttaaaaccca atgagctagg
     9601 tttaggtaaa gtggtaagca aactgttttt aggcctatac taccgctatc aggttgaaat
     9661 taaaggcatt gagatagtaa cttaccaatc tcaagagctg aaaattggcg aacaagtgga
     9721 agtgggcttc caagtaagag agtttatcct attttaagga gaatatatga aaattgaagt
     9781 ttggtcagat tatgcctgcc cgttttgtta catcggcaaa cgccacttag agcaagccct
     9841 agcccaattt gaaggcgagg ttgaagtggt tttccgagcc tttgagcttg atccgcacgc
     9901 taacggcgaa ccagagggcg atattcagca acgcctaatg cggaaatatc aaaaaaccgc
     9961 agaacaagct gatgaaatga ttcgttatgt ggaacaagcc ggcaaacaag ctgggctaga
    10021 tttgcgttac cgcaccaccc aatacactcg cacctttgaa gctcatcgct tggcgaaatt
    10081 tgcgaaaagc aaaggtttgg gcgaagtgat gattgaacgt ttattcaaag cctatttttc
    10141 cgataatctc attttggcga aacgcactca acttatcgac ttagcgttag agctcggttt
    10201 agatcgtgat gaagtggctc aattacttac aggtgatgat ttcggccacg aagtacggga
    10261 agatgaacgt atggctcacc gctatggcat taatagcgtg ccattttttg tgattgatga
    10321 aaaactcggt gtgtcaggag ctcaaccgcc aaaggtgttg ctagatgcta tcaaacaggc
    10381 attgcaaaaa taatccgaaa aaagaccgct tgttaagcta aacaagcagt cttattcttc
    10441 ttataattta caatttattt tttggtgatc gcacctaaaa taccacgcat aatttgtttg
    10501 gtgacttggt tgcgtaagtt tctgccaact gaatgcgcca cttggctaac cacttgttcg
    10561 gtaatcgatt gatctttttt cttcttcgag ccaaaaatgg aagagagaat accgccaaag
    10621 aagtcattgt ttgcttcttc tgccgcagcc tgctctgctt taattgcttc tgctttcgca
    10681 ttgagtaatt caaaggcaga ttgattattc acatattggc tgtagtgatg atataactca
    10741 tcttgtttca ctatagcatc acgctcgccc atcgctaatg gtgctaattg gctttttggc
    10801 ggataaatat aggcaatttc tacaggcgtt ggcatacctt tttcatctag caccgaaacc
    10861 aacgcttgcc ccacaccaag ttgcgtgatg gcttctacca catttacctc tttattggct
    10921 cggaaagttt ccgctgctga ttttaccgct ttttgatcac atggcgtgaa agcacgcaaa
    10981 gcgtgttgga tacgattgcc aagctgccct aatactgaat caggtaagtc gagtggattt
    11041 tgcgtaacaa aataaacacc cacccctttt gagcgaatta aacgaaccac ctgttcaatt
    11101 ttatccacca atgccttagg ggcatcgtca aacaataaat gagcttcatc aaagaataaa
    11161 acaaacgtcg gtttttctgg gtcgccaact tctggcaaat tctcaaagag ctctgccata
    11221 aaccaaagca ggaatgcact gtacactctt ggtgagttaa ttaatttttc tgcattcaac
    11281 atattgatta caccacgccc attacgggtt tggatccaat cgtgcaaatc taatgcaggc
    11341 tcaccaaata aattatctgc cccttcattt tcaagcctta ataacgcacg ctgaatagct
    11401 ccaacgcttg ctgcagaaat atgcccatat tccagttgga attctttcgc attatctgcg
    11461 acaaatttaa gcaacgcacg caaatctttt aaatcaatta gcaataaacc tctgtcatct
    11521 gccacacgaa aaacgagatt taacaagcct ccttgggtat cgtttaaatt gagtaaacga
    11581 gaaagtaaca tcggtcccat ttcggaaata gtggttcgaa gtgggatacc tgatgtacca
    11641 aatacgtccc aaaacgaaac tggatagccc tttaagtaat cttctccccc taaattaaac
    11701 tgtaaaatgc gttctgcaat ttttcctgaa aaattacccg cttgtaccaa gcccgaaaga
    11761 tcacctttta catctactaa aaatactggc acaccatcat cactcaaaga ttctgccaat
    11821 ttgcgtaaag taaccgtttt acctgtaccc gtagccccag caattaaacc gtgccgattt
    11881 gccattttgg cattaagcga aataactttg cctgtttctg ttcgagcaat ttgatacaaa
    11941 ctcatctttc attctcttaa aggtaaatta attttttgtt ctcatcatat aaaaatttat
    12001 cacttaatta cggctattct ttttcgtttt tgccaagaac gtttttttac ttcttgagcg
    12061 gttcactttc ggtaaagtca gtaaggattc cttgtcgtat tgactcacag gaatctgatg
    12121 cccaatatac tcttcaattg caggcaaatt aaccgcataa cgctcgcaag caaaactaat
    12181 tgaatggccg ctctcccctg cccgacccgt tctaccaata cgatgaacgt aatcctcttt
    12241 atcatcaggt aaatcataat taaacacatg cgtaacatct ggaatatgta atccacgtgc
    12301 tgccacatca gtcacgacta aaatatctaa attacctttg gtaaaattat ctaacagaga
    12361 taggcgtttt ttctgtggaa tatcacctgt tagcattcca atccgatgac catcggctgc
    12421 taaatattgc caaatttcct cacatttatg cttagtattg gcaaaaatca tacagcggtc
    12481 tggccattct tcctccaata acgtcaataa aagtgccatt ttgtcttcat tagacggata
    12541 aaataactct tcttttatac gatgccctgt acgttgtagc ggttcaatct caatatattc
    12601 agcattatcc atatcttcat aagcaagctc acgtacttta gcggataaag ttgctgaaaa
    12661 gagcaacgtt aaacgctcag taggcacggg agcttttctc attaaataac gaatatcttt
    12721 aataaaaccg agatcaaaca tacgatcagc ttcatctagc acaatcactt ggattttatc
    12781 taaatgaata atcccttgct taacataatc gatcacacgc cctgtggttc caactaaaat
    12841 atctacccct ttttctatgg cttgtatttg cttgtcgtaa ccatcaccac cataagcaag
    12901 ggcaagttta agatcgcaat gtggtaaaaa aagctgtgca tctgccccga tttgtaccgc
    12961 cagctcacga gttggtgcaa gaattaatgc tcttggctga ttttttgctg tctcaatttc
    13021 gttatttaat aaatggttga acgtggcaat taaaaaagca agcgttttac ctgtgcctgt
    13081 ttgagcctgt cctgcaatat catttccgtt aagcgtaatc gggaaagttt ttgcttggat
    13141 aggtgtacag aactcgaagc ctttactatt caacgcattg agtacatttg tgtgaatggg
    13201 gaagtcaata aaacggtgtt cggtaagatg atttgacata atatttcctt gagatatttg
    13261 ttattgctac aagcggttat attttaatta aaatttgcaa aaaaatttaa caaaactaac
    13321 cgcttttcac tttattaggc aatatagatt gaaaaagttc tcggcttttt agtggctgag
    13381 aacctaaata aggtttcaat gcaattcggg taaatcgttt ggcagcttgt tgtgtttgtt
    13441 tttctgaaaa atctaattga gcaaacgcca ataaatcaca gcctaaaaag ctattgttat
    13501 tttgtaataa tgaggcaata aagccttcac tttctctaaa ttggtaactc attttcggat
    13561 caattggcaa acctgttgcc gtacaatggg taaaatctac gccatagcct aatgctttta
    13621 atgtatgaaa ttcaaaagta cgcaaaatcg gctcaatttg gtgttgagta gccagctccg
    13681 tcatacaacg caaataatgt tgaaataatt cagggtaagc ggtctgattt tctaacactc
    13741 ttgcaagcac ctcattgata taaaaaccgc tataaagtgc agccgtttcc attggtaaag
    13801 taagagcagc aggctctgcc tttgtgagtg tttttaaatc acccttgcca gaccaacgca
    13861 ctaacaaggg tgtaaaaggc tgaagcacgg ctttcaacgg cgagcgagcc cgccttgcac
    13921 ctttagcaag taaagtaatc cgcccgtgat gttcggtaaa aaactccact aataaactgc
    13981 tttcgctgta ttcacgccga tgaaggacaa aggctcgttg ccattgatct gtggtcataa
    14041 ttaatcccga ctatatgtca ctttctttgc ttcgccaaag aaagtaacca aagaaaggca
    14101 accctacttc accgctatct tcgcttggtt tgaatttgct taacgaaaaa attccaaact
    14161 cgccgcttcg ctgctcaaac aaggaatttt tcctacaaat tcaaagtcgc tcaggcggtt
    14221 cagaagggaa cccggcagag catcattttg caaaattttt caaaaaaatc accgcttgta
    14281 tggtcggatc gggttccctt ctgagttgcc cgaacgactt gagattttta ggaaaataac
    14341 ccgagcgaga gcgaagcgaa catcagggtt atttttcgtt aagaaaattt caaccaagtg
    14401 aggatagcaa cgaagcaggg tgtgctttct tttggttact tttctttgca caagtaaaga
    14461 aaagtgacaa aaaaactact catccatata ccctaaactt ctcaatgctc tttcatcatc
    14521 cgcccaacca gcttttactt tcacccaaag ctcaaggtgc acttggttgt caaataagcg
    14581 ttccatatct tttcgagctt caatgccgat ggttttgatt ttttgccccc ccgcaccaat
    14641 aaccattttt ttctgaccat ctcgttctac taaaatcaag ccattgattt catacacccc
    14701 acgctcattc attttaaatt gttcgatttc taccgttacc gaataaggta actcttcacc
    14761 tgtaaaacgc attagttttt cacgaataat ttctgatgcc ataaagcgtt gagagcggtc
    14821 tgtcacatac tcttcaggaa agtggtgctc accttgacgc agtgattgac gcacaaattt
    14881 ctgtaaaata tgcacatttt taccccgttg tgccgaaatt ggcagaattt cagcaaaatc
    14941 aaatttttgt gaaagctcgg taatatgcgg cagaagttct tctttttcct taatgttatc
    15001 aattttattg attgccaata aaacaggggc ttttgccgaa cgcaatttgt ttaacaccat
    15061 ttcatcatct tctgtccatt ttgtgccttc cacaacaaag atgatgagat ctacatcgcc
    15121 aatagcagaa cttgctgcac ggttcattaa acgattaatc gcacgttttt cttctatgtg
    15181 taagcctggg gtatctacat aaatcgcttg gtattgatct tcggtgtgaa tccccacaat
    15241 acggtgacgg gttgtttgtg ctttgcgtga agtaatcgag attttttgtt ctaaaatctt
    15301 atttaataat gttgatttcc ctacatttgg gcgaccaaca atcgcaataa aaccacaata
    15361 ggtttttgca ggagtttgaa tttgttctgt cattttgttt tcctttcatt ctgtggaatg
    15421 aatttgatgg tgcaagcgtc cacgcttgta ccatttaatt aaatctttag cacaagcgag
    15481 gacgcttgcg ctatcttact ttttcgtttt aaccaccgct aacgcttttt ctgcggcatt
    15541 ttgttcggct tttcggcggc tggtgccaat gccgataaac acttcctcga cgttaatcac
    15601 tttgcaggtt acacggaaag tttggttatg agcttcgcct ttaatatcta atacatcata
    15661 ttcaggcaat ggcaattttc taccttgtaa aaactcttgc aggcgggttt ttggatcttt
    15721 ttgtgaatcg cctggactga tgtctttaag caaatctgaa taccaatctt ccaccttttc
    15781 cattgctttt gccatatctt gatcgagata aatggccgca ataatcgctt caacacagtc
    15841 cgataaaatc gattctcggc gaaaaccacc actttttagc tctcccggac ctaattttag
    15901 gtagtcgcct aaatcaaatt tgcgagcaat aatcgctaga gtttgctcac gcacaagagt
    15961 tgctctcata cggctaagct caccttcatt cgattttgga aatttgtcgt acaatacttt
    16021 accaatagta aaatttaaaa ttgaatcgcc tagaaattca agacgctcat tgtttttggt
    16081 tgccgcactg cggtgtgtta aggcctgaat gaggtaatca aggttatgaa attgataacc
    16141 taattttttc tgtaatcgtt ctagttgcat agtttatgtg aataaagggg cgtatctcat
    16201 acgcccctgt taagattaat tgattgaggt aaacattcta gaaaaacgaa gccccgttgg
    16261 gaattcattt gcttttttat ctaaacttaa ccaaataaaa gtggctttac caacgatgtt
    16321 tctctcaggc acaaagcccc agaaacgact gtcttcactg ttatcacggt tatcacccat
    16381 cacaaaatag tatccttgtg gcacaaccca ttcaccttct gcttgccctt cttgttggta
    16441 gaaataaggt gcatagttaa atgccattgg gtgatttaaa atttgatgag ttacattacc
    16501 tttttcagtg cgttctacct gcatttcacc gtgatagaaa aactcaggat ttggcttgcc
    16561 ttcgctgtat tcaaatacct ttgtttcgcc attggcttta gtaaccgtta attgctgagt
    16621 tgcaaaatca tatttaattt tatcgccacc tactgccacc acacgcttaa tataatcaac
    16681 gtgtggttgt gctggtgctt tgaatacaat cacatcgcct cgttctggtt tgcccgtttc
    16741 aatcaaggtg ttttgccaga taggatcttt aatgccgtag ctgaatttat ttacgactaa
    16801 gaaatcgcct acacgcaagg ttggctccat tgaaccactt ggaatttgaa atggttcaaa
    16861 taagaacgag cgaagtactg taacaaagaa taaaatgccg aaaagtgagg caaaaaattc
    16921 gcctactgcg gatttaggtt gaatttccgc tatttcttca gcggttaatt ctctgcctaa
    16981 acgtttttgt tgtagaacaa tcgcctgttt acgtcttggg tcagcactga atttgtaaaa
    17041 cgcccaaaat ccaccacaaa taataaccaa ggcaactaaa ataatggaaa tagtatttgg
    17101 cagttgcatt gaatcaagcc attgccaaat accataaata atacctagaa aaataattgg
    17161 cataaattgt gccactgaat gctccttttt attcaaaatt gcaaagtttt ctcaaaatat
    17221 gaccgcttgc aagcggtcgt attttacacg aatattgaca attaatcctt acccacatga
    17281 agaattgcca aaaatgcttc ttgtggcact tctacgttac cgagagattt cattcgtttt
    17341 ttaccctctt tttgtttttg tagcagtttc ttcttacgac ttacatcacc accgtaacat
    17401 tttgctaata cgtttttacg caactgtttt accgttgagc gagcaataac gtggttacca
    17461 attgccgctt gaattgcgat gtcaaattgt tggcgaggaa tcagctcacg cattttttcc
    17521 actaattcac gtccacgata cgccgcattt gcacggtgaa cgataatcgc caacgcatca
    17581 acacgctcgc cgttaatcat aatatccaca cgcaccatat cagccgtttg gaaacgttta
    17641 aaaccgtaat cgagtgaagc ataaccacga gaggttgatt ttaagcggtc gaagaagtct
    17701 aacactactt cgcccattgg gatttcgtaa gttaaggcga tttggttacc gtgatagacc
    17761 atattggtct gtacgccacg tttttccaca caaagggtaa tcacgttgcc taggaattct
    17821 tgtggcacaa gcatattaca ttctgcaatc ggctcacgaa tttctgcaat attgttgact
    17881 gctgggagtt tcgatgggct atccacatag atcgtttcgc cactggtttg caccacttcg
    17941 taaactacgg tcggagcggt agtaatcaaa tcaagatcgt attcacgctc taaacgctct
    18001 tgaatgatct ccatatgtaa taagcctaag aagccgcagc ggaaaccaaa gcctaacgca
    18061 cttgaagttt ctggctcata gaacaatgac gcatcattta ggcttaattt gcctaaagca
    18121 tcacggaagg cttcgtagtc gtctgaacta atcggaaata accctgcata aacctgtggt
    18181 tttactttct taaagcccgg taatacttca gttgctgggt tgtggtggtg ggttaatgta
    18241 tcgcccactg gtgcccctaa aatatcttta atcgcacaaa ctacccaacc tacttcccca
    18301 gttttaagtt ctgcggtatc cacttgtttt ggcgtgaaaa taccaaggcg atctacattg
    18361 taagactgcc ctgtactcat cactttaatt ttatcgcctt ttttcagcac gccatttttc
    18421 acacgcacta aagacacaac gcctaaatag ttatcgaacc aagagtcgat aattaacgct
    18481 tgtaatggtg cttccgcatc gccttctggt gcaggaattt tcttcacgat ttcttctaaa
    18541 acatcttcaa tgcctaaacc tgttttagct gaacagcgta ctgcatcaat ggcatcaatg
    18601 ccgacaatat cttcaatctc ttctgccaca cgctcaggct cggctgctgg taaatcgatt
    18661 ttatttaaaa ttggcacaac ctctaaatcc atctcaattg cggtataaca attcgccaac
    18721 gtctgtgctt ccacgccctg ccctgcatca accactaata aagcaccttc acaagcagca
    18781 agcgagcgag aaacttcata tgagaaatcc acgtgccctg gcgtatcaat aaagttgagc
    18841 tgataaattt cgccatcttt cgctttatag tttaaggtta cactttgtgc tttaatagta
    18901 attccacgct cacgctcaag atccattgaa tctaatactt gagcctccat ttcacgatct
    18961 gataagccac cacaagtttg aattaagcgg tctgataaag tcgatttgcc gtgatcgata
    19021 tgagcgataa tcgaaaagtt acgaatattt tgcattttca tcgggcagtt aatgtcctgt
    19081 tttgttattt gtttatcaaa aattaatcgg ggaattgtac ttgaaataca aggttttgca
    19141 aagaaaacaa atagcaataa gcggttattt tttcctaaaa atgtgcaaat ttcttgagaa
    19201 aaatgaccgc ttgcac
//
LOCUS       DANLUT010000025        19182 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLUT010000025 DANLUT010000000
VERSION     DANLUT010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19182
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            122..334
                     /locus_tag="PXB38_000779"
     CDS             122..334
                     /locus_tag="PXB38_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL5353127.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(394..1548)
                     /locus_tag="PXB38_000780"
     CDS             complement(394..1548)
                     /locus_tag="PXB38_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL5353128.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAVALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(1545..2363)
                     /locus_tag="PXB38_000781"
     CDS             complement(1545..2363)
                     /locus_tag="PXB38_000781"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL5353129.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGATKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            2440..3348
                     /gene="rdgC"
                     /locus_tag="PXB38_000782"
     CDS             2440..3348
                     /gene="rdgC"
                     /locus_tag="PXB38_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL5353130.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQIVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            3369..3974
                     /locus_tag="PXB38_000783"
     CDS             3369..3974
                     /locus_tag="PXB38_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL5353131.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            3990..4781
                     /locus_tag="PXB38_000784"
     CDS             3990..4781
                     /locus_tag="PXB38_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL5353132.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIGMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            4785..5927
                     /gene="argE"
                     /locus_tag="PXB38_000785"
     CDS             4785..5927
                     /gene="argE"
                     /locus_tag="PXB38_000785"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL5353133.1"
                     /translation="MKQISFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSHNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(6074..6361)
                     /locus_tag="PXB38_000786"
     CDS             complement(6074..6361)
                     /locus_tag="PXB38_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5353134.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSVVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(6354..6545)
                     /locus_tag="PXB38_000787"
     CDS             complement(6354..6545)
                     /locus_tag="PXB38_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353135.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(6835..7425)
                     /gene="yraP"
                     /locus_tag="PXB38_000788"
     CDS             complement(6835..7425)
                     /gene="yraP"
                     /locus_tag="PXB38_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL5353136.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSVAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNGEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(7435..8019)
                     /locus_tag="PXB38_000789"
     CDS             complement(7435..8019)
                     /locus_tag="PXB38_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL5353137.1"
                     /translation="MLNKIQDRFTESIQTQISAAELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(8025..8396)
                     /locus_tag="PXB38_000790"
     CDS             complement(8025..8396)
                     /locus_tag="PXB38_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL5353138.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DLIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(8371..10092)
                     /locus_tag="PXB38_000791"
     CDS             complement(8371..10092)
                     /locus_tag="PXB38_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL5353139.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10166..11038
                     /gene="rsmI"
                     /locus_tag="PXB38_000792"
     CDS             10166..11038
                     /gene="rsmI"
                     /locus_tag="PXB38_000792"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL5353140.1"
                     /translation="MKNRQNSSEINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(11283..12449)
                     /locus_tag="PXB38_000793"
     CDS             complement(11283..12449)
                     /locus_tag="PXB38_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353141.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGVTVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(12601..14115)
                     /gene="putP"
                     /locus_tag="PXB38_000794"
     CDS             complement(12601..14115)
                     /gene="putP"
                     /locus_tag="PXB38_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL5353142.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMVICLLGAIGIGYFGMAYFFGHPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(14209..14997)
                     /locus_tag="PXB38_000795"
     CDS             complement(14209..14997)
                     /locus_tag="PXB38_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL5353143.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(14994..15572)
                     /locus_tag="PXB38_000796"
     CDS             complement(14994..15572)
                     /locus_tag="PXB38_000796"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL5353144.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQASHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(15574..15765)
                     /gene="ssrS"
                     /locus_tag="PXB38_000797"
     ncRNA           complement(15574..15765)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXB38_000797"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(15870..16160)
                     /locus_tag="PXB38_000798"
     CDS             complement(15870..16160)
                     /locus_tag="PXB38_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL5353145.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVAVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            16239..16796
                     /locus_tag="PXB38_000799"
     CDS             16239..16796
                     /locus_tag="PXB38_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL5353146.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            16894..17958
                     /gene="hemE"
                     /locus_tag="PXB38_000800"
     CDS             16894..17958
                     /gene="hemE"
                     /locus_tag="PXB38_000800"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL5353147.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            18105..18695
                     /locus_tag="PXB38_000801"
     CDS             18105..18695
                     /locus_tag="PXB38_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL5353148.1"
                     /translation="MRNPIHKRMEHFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            18831..19103
                     /locus_tag="PXB38_000802"
     CDS             18831..19103
                     /locus_tag="PXB38_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL5353149.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
BASE COUNT         5697 a         4247 c         3925 g         5313 t
ORIGIN      
        1 gcgttaatta aagttgaatc ttgttagtta ttttcctcaa ggcaagtgat tgatagatac
       61 gtctgtaata tcccgtttag ctatctttta tcactttttg tatttatata aggaaaattt
      121 tatgtcagca attaccggca cagtaaaatg gttcaacgcc accaaaggtt ttggttttat
      181 cacccctgat caaggtggca aagatgtatt cgtacacttc tctgctatcg aagcaaacgg
      241 cggctaccgc acattagaag acggtgctaa agtacaattt gaaatccaag attcagagcg
      301 tggagcttca gccgtaaacg tgaaaacaat ctaatttcag caaattcaat gaatttcgat
      361 aaaaatgccg acaacttgtc ggcatttttg ctatcaatta atctgtactt caaacctttt
      421 cggcacaata aaaatggcag gtagggtaaa aattgccatc aaccaaaatg tcaggcttgg
      481 ggaatgttga tagaccattc cggcaataaa ggtaaatact gccataaaag cacagcttgc
      541 caagccaaaa tagagacctt gtaatttcgt cacacgctct gccgattgca tcgaaatata
      601 gcgaatcatc gcaatatgag ccgccccgaa ggtaatagaa tgtagcattt gcattacaat
      661 aatcagcacg atctctgtag tactacccat tattgcccaa cgaatcactg caaaaacggc
      721 agctaaaatc attaaatggc tgattttcca cgatttaaac aagcgtttag agaccaaaaa
      781 gaacaaaatt tccgccacca ccgccaagcc ccaaaacagg ctagtcattg cggttgaaat
      841 actggcattt gaccaatgaa tggtgctgta agtgtaataa gcggcgtgcg aggctgaaat
      901 taacgacacc gcgatcaaca tttttaaggt ttccggctct ttcaataatt ggcgataagt
      961 tacgcttgaa gtattggctt tattaccttg ttcttcaaac ccgactttgg gcgtagcaag
     1021 ctgccctatt cctaaaaaaa ccaagaaacc gatgataatc cacaccaccg aattttcacc
     1081 aagcaagccg ataagatagc cggcagaaag tgagcctacc acaaacgcca ttgagccgaa
     1141 taaccttgct ctgccgtaat ccagcccgat ctgatgttgc caaattgagg caatgctatc
     1201 ggctatcggc attgcccccg aattgaacat ttgaaacaac attaacaccg gaaaaagtag
     1261 ccaaatgaaa tcccctgaaa acagcaacgc caccgcagcc gcaatattca gccaagttaa
     1321 actgcgggcg gtgggaatga gttggctcac ggtttttacc cgttgtgagg caagcatact
     1381 gccggcaaag cggaacaaat agccaactgc ggcaaataag ccgatcattt cagtcgaata
     1441 gccgtgatgt ttaagccaca ctggcaaaaa cggcaacaac acgccatagg cacaaaaaaa
     1501 gccaaagtaa ttaaatgccg cccattggaa cggggaaact ttcatcataa cgattgctcc
     1561 atttctctgg ctcgatgaat tgccgcccac attgcatcat caacggtttt agcaagatcg
     1621 tgctgctcaa acacctcaag ggctttcgcc gttgtgcctc cctttgaggt cacattttcc
     1681 cgcaaggtcg aaagtggcgt agtcgggttc gcttccacca atttcgtcgc ccccaatgcg
     1741 acagattgta caagcgttct tgcgtcctgc tcggaaaagc ccatttgcac cgcactttgc
     1801 tgcattgcct ccataaaacg gaagaaatac gccgggcttg agccggttat cgcaataatg
     1861 tggttgattt gctcctcggt ttccacccag taacatttac caacggctga catcaactgt
     1921 tcggcaaatt ggcaagcggt cggatttacc gatttttttg caaataatcc ggtcattcct
     1981 tcgctgatta aagacggggt gtttggcatc gtgcgaatga tatttttcgc actcggcaac
     2041 agcgtttcca agcgttgcac agaaatacct gctgctactg aaatcaccca tttgttggaa
     2101 aaatcaacat cggcaaactc ggcacacact tgtgccatca tctgtggttt taccgccagc
     2161 acgatcacgt cagcctgctc taccgcctca cgatttgcaa aatttgtcgc aattccgacc
     2221 gcttgtaact cctctcggcg agccaaatta cttttattgc acgcaatgat ttgttcggca
     2281 gaataaccgc tttttaataa gccttgaata atcgcatacg ccatatttcc ggtgccgata
     2341 aaggcaagtt ttttctcgtt cattcgcaaa ttctctactg tgttgggttg gggtctgtta
     2401 aaataacact attctacacc cgataaagga tatgcaaaaa tggtttggtt caaaaatgtg
     2461 atgatctata aattaaccgg cgagctggcg ttggaaagca atagccttaa cgagttacag
     2521 caagaaaccc gctttacccc ttgcagccag cacgatatga gcaaattcgg ctgggctacg
     2581 ccacttaccg gctcggattt actgcatttc tcacaagcga accaattttt gctgatttca
     2641 cacaaagaag ataaattatt acctgctaat gtggtgaaag ccgaaaccga gcaacgcatt
     2701 gcagaactgg aagaaaaaga ggctcgtaag ctgaaaaaaa ccgaaaaaca agccgtgaaa
     2761 gatcagatcg tttctgcgtt attgcctcga gcattcagca aacatcaatt caccgctctt
     2821 tggttggatt tagataatca gttggtttat gtggatgcag cctcgagcaa acgggcggaa
     2881 gatacgctgg cgttactgcg aaaaacactt ggctcgttgc cggttgtgcc gatttccttt
     2941 accctaccgc cggcagaggt aatgacgaat tggatcgcca aagggcatac gccaagttgg
     3001 ttgaatttgt tggaagaggc agaactgaaa tctttcgata ccgacagcat tattcgctgt
     3061 aaacgccaag atttagagac ggaagaaatc gcccggcact tgcaagcggg caaatttatc
     3121 acaaaacttg cgattgaatg ggaagggcat ttcaattgcg tgttaaatga agacgccacg
     3181 ctttcacgcc tgaagtttgc cgatgaagtg cgagagaaaa atgacgatat tctcaaagaa
     3241 gatgtggctc aacgctttga tgccgatttc ttattaatga ccgaagagct gaaacttttc
     3301 accgaaaaaa tgattgccga atttggcgga attaaatcca gaatttagaa aaaaatttaa
     3361 ggaaagcaat gttagatcaa accattatcg accaatatga cgccttgatt tttgatatgg
     3421 acggcacatt aattgacacg atgccaagcc acgccaaggc gtgggaaaag gtgggcgaag
     3481 tgttaggcta cccaatcaat ccaaagccaa tgtacgaact gagtggctca accacttttg
     3541 tgattgcccg agaaataatg caacgctcca atatccccga gcattatttt gagcaagtgg
     3601 tacaactaaa acgggaattt gggattgaaa tggtgttagc caatgccact ctgttgcctg
     3661 cctttgagat tattaaagct aacgttggca aaaaaccaat ggcaatcggc acaggctcac
     3721 accgtgcaat ggtggaatta ttagaccaaa aatttaactt acgtcaatat gtttcggtta
     3781 ttgtagattc tgatgatgta agcaaccata agccagcccc tgaaaccttt ttaaaatgtg
     3841 cggaaaaact tggcattgcc ccacaccgct gtttggtgtt tgaagatgcc gatttaggcg
     3901 tgcaagccgc cctcaacggc aatatgaacg tgtttgatgt acgtacgaat acgataactc
     3961 actcaacccg ttaaaaatga taggtttata tgaaaacaga gtggattaaa catttaattc
     4021 aacaattaac cacgctttcc aaagccatcg aaaactactt taccagcggt tcatttgggg
     4081 tgaaattcta cccttttcta atgcaccctt gttttcgtaa aagctgtgcc tttttgattt
     4141 ttattattgg tatggtttca agttttagcg ggctatttta tttggtggcg gaacacatca
     4201 cgattttatt tagcgaaaga tcgctcacca cttacttcca ccatagcacc cttgaattga
     4261 tgattccagt cggcacaatg atagatgaaa aaatcagcga attatcacca ctttcggtgg
     4321 taatgcgttc aatgtttgtg ctacaagcag tcgttttttt ctttatttat gcaatcggca
     4381 tcacccacat tgctcacaac aaattgcggg tcatcggctt attgctttcg ctatgctttg
     4441 cgattggctg ctcactagtt gccggtattc agccaagcag tcgtggcgaa ttcggcattt
     4501 acaatttagg ggcaagcatt acgtttttaa tcggcaattt aacgctgatc atcgcaggct
     4561 tcgatctcta ccacccttca atgcaatttt ttaaacgctt tagcattggt gcgggcgtta
     4621 tcggggcaat ctgtatttta atcacgattt tcctaccaac cctgtttagc ccgttaattg
     4681 aacgagcagg tatttatacc attatgctgt gggaaatttt agccggtttt gccatcatta
     4741 aacgcctgtt gaaattgccc tcattcagac aacaaggata accaatgaaa cagatttcct
     4801 ttattcaacg ctatgctcaa ctgattgagc taccgaccat ttccagcctt gttgccgaag
     4861 aagatttatc gaaccgccgt ttgattgaat tgctcgccac ttggctggca gatttcggct
     4921 ttaaaaccga gattttagcg gtagaaggta gccataataa atacaattta cttgcgacct
     4981 atggcgaggg tgagggcggt ttattattgg cagggcatac cgacaccgtg ccgtttgatg
     5041 aaggaaaatg gcgcttcaat ccattccaat taaccgaaaa agcaggcaaa ctctacggct
     5101 taggcacggc agatatgaaa ggctttttcg cctttgtggt ggaggttgtg agccaactcg
     5161 acctaaccca aatcaaaaag ccgattcgca ttcttgccac cgctgatgaa gaaaccacaa
     5221 tgctgggggc aagaaccttt gctcagcaca gccacattcg ccccgattgt gcgattattg
     5281 gcgagccgac ctcgctcaaa ccgattcgag cccacaaagg gcatattggc gaatcggttc
     5341 gcattaccgg cagaagcgga cactccagcg accccgccaa aggcattaat gcgattgaat
     5401 taatgcacca atctatcggt tatttaatga aaatgcgtga tgaactgcga gagaaatacc
     5461 acaatccgct gttccaagtc acccacccga caatgaactt cggcaatatt cacggcggcg
     5521 atgccattaa ccgcatttgt gcctgttgcg aattgcaatt tgatatgcga ccactaccga
     5581 atatggcggt gcaagatttg tatgcaatgg taaacgagca tttaaaaccg atgctggaac
     5641 aatatggcga tttaattgaa atccgccatt tacacgatgg aattccgggc tacgaatgcg
     5701 aacactcggc acaaatcgtg caagtggttg aaaagctact gggcgaaaaa tgcgatgccg
     5761 tcaattactg cactgaagcc ccattcattc aacaactctg cccaacgctg gtactaggcc
     5821 ccggctccat tgaacaagcc caccagcccg atgagttttt ggaaatgaaa tatatcgaac
     5881 cgacaaaaga gttattgact aaattgattt atcatttttg tggataaatc aacagaaaca
     5941 agcgctcatt ttcgccatac tttttgcaaa agaatcggca aaaatgaccg cttgatattt
     6001 agtattgagt gacctataaa cttccatact tcatcattga tttaaggaga ttctgttaga
     6061 taggtattaa tctctagcta ggtcttggat acaaacggcg agaatgaatt atagtaataa
     6121 tatatacttt ttctaggtgt atctcataga caatacgata attgcggcag aatgtttcta
     6181 atgtgccatc ttctctacgt cgccctattg taggcataaa tgcaatgaga tcgagtttat
     6241 tttgtaattg ttcccaaagt gaaactacgc tcaaccaatg ccctgtataa tcttctaccg
     6301 actgtaaaat ctcaatgaca ttagaccttg cggtaagtga cagctcccaa gatttaggca
     6361 taattaacct caaacaaatt ttcattttct cgtaattgct gacgtttctg catatccgca
     6421 aataaatgat ttaattcgtt attgatttgt tctttggtaa aggtttctcc tcgagctatt
     6481 gcttcttgac cagctttaat ttgctctgca agaaactcat catatccttg ttctttgaat
     6541 agcatattct gctcctttga tttgtgtctt gattccacta tgttcaagac atagtttaag
     6601 tttaaatcta cgctcaaagc aatgaagagt caagggaatc cttatgttga tagggtgtgc
     6661 atatttttcg agtcaaatga attaaaaatc atcattacga tcatccactc atagatttta
     6721 tcttcctatc taaggtcatc ttcttatatc aaacaagcgg tctaaatttg caaaaaaatg
     6781 acaaatttag accgcttgtg agttacaaaa atataaacta attgagctta tcaattactg
     6841 cgcataacta aatactttca ccactttggt tactccacct acattgcgag cggcttcggc
     6901 ggcggcatca gcttggtttt ggctgacttt gcccattaaa aacacttcgc cgttttcggt
     6961 gacgactttc acttcggtgg cttttacctc gccatttact aacagtttgg atttcacttg
     7021 ggtggtaatc cagctgtctt gtgtaatctg tccaaagccg attttttcgc cttggcggat
     7081 ttcgttgtaa atttccgtca cgccctccgc cccagcagcg aggtttttcg cattttccac
     7141 tacgtccata cttggtgctt gcccgattaa taacactttg ccgttgtaag ccaccacgtt
     7201 aattcgggct tcttgtttga tttgctcgtc tttattaatg ttgtaagcga ctttttcttc
     7261 taaaatttca tcatcaactt gcgtgccggt ggtgcgtggg tctgtcgcca ctttagttgc
     7321 aaccgccaca gaagtcacca ccgccgtggt gatacaacct tgtaaagaga taaaacctaa
     7381 tactaatagg ctgcccttta atagtttatt tgctaatttg ttcataatct ctccttacga
     7441 aaatagtaaa tggtcgataa gttcacataa taaattcaca taaaaatgat ggctttcaat
     7501 caccctcagt tgattggtgg aaggggctga aatttcaata tcactttcat ctaataagcc
     7561 gagtgtgtgg tcgttattac tgcctgttaa agcaataata tctaaatcta aatgttgatt
     7621 tttcgccgta tgaatagctt gcaatataca ttcttcatta cccacaggcg aaaaaacaat
     7681 gaagagatca ccctcttttg caaccgcctg caactgtttt ttataaacag cctctaactc
     7741 gttatcttgt gccacaactc ctgccaatac accgcttaat tgcagttgta cggcagcaaa
     7801 actcggtctt gccagttcat aacggtgaag taagtggctg accaataatt cggcattacc
     7861 gtaagagcga ccgtgtccgc agacgataac tttatcgcca cgcaacaaac aggcaacaat
     7921 gcggtttgcc gcttcactta atttagccgg caatagctca gcggcggaaa tttgggtttg
     7981 aatactttcg gtaaatctat cttggatttt atttaacatt ctttctaacc taaaaagtta
     8041 ggaatccaca caggcgtttg gtttccttca aaagcaacca catcaaaacg gcaatttgca
     8101 gtttctaaac tttggttttg tttaagcaac cacatattag cggcattttg ccatttttgt
     8161 tgcttgcggt aatcaatact ctcaacggct gaaccgaagc ggttgctttt acgctggcga
     8221 acttctacaa acacaacggt ttgtccgtct tgcataatca gatccagttc gccaccttta
     8281 aatgcttggt tagcggcaac aaaacgaagc ccttgctgtt ctaaaaacac tcgggctttt
     8341 tgttcataaa acgagccttg ttcccgttta ttaataagct tgttgaatag ctccattgcg
     8401 atattgcatc caagataaac tacgttcaat attacaatgt tgtccggctt ttaactcacc
     8461 ggttaaacct gaaattttgt agcccggaat atggcggaat tcattgaatt tggttgccaa
     8521 tgaccacgca tcagccccca ttgcgtataa acgcatcatt gagaaatcgc tattggctaa
     8581 attctcggct tttttatatt cactagaact ttgatcagct aacagtggca cttcactaaa
     8641 ttttacccct tccattgaag tgtaaaaatc aatgccgtta tttggcgaat tactgcgaga
     8701 tgaggtatag atcgctaaac gatcttttaa ggttgagcta tcaatacctt gtttaatttc
     8761 taatacttgc tcggcattcc ccaaaatata taaagctgct ttgctcacac ctgcattttg
     8821 aatagcggca acggcatcaa gcggttgatt gtagtaacgc acatcagcat cgctattggt
     8881 aagctgacgc cagcgtttgg caaaggcttc tgccgagcgg ttgccgtagt catcttgagg
     8941 ggccgcaacg atagcgacac tattaccgtc ttgataaatt ttttccgccc ctgattgtgc
     9001 ctcagattca ggagataaac cgtagtaaca cacctgagca atattacgca cattttcagt
     9061 ggcattcagt gccaaaatat tcacgttttg gatttctggg ctaagtagca tttcatcaac
     9121 acgagatttg agcaatggcc cgacaatcac atttgcccct tgctgttttg cctgtgaaat
     9181 taaggaatta acatcagatg aatcggtatc aaaagtttgc actgcggttg agtcatcagc
     9241 cttagcatca ttaaaaccac gcttgataat atcacccaaa atttttgcat caccacttag
     9301 aggcaatagc aatgcgacac tgtttaactg ggtttgttgg aaattactca ccccttgtaa
     9361 ttccgttggc attacggcaa ccgcactatg gctcgggtat tgggctttcc aattattaat
     9421 tgcttgtggc atttgtgccg gtgtcgtcac attttgatta tagatattaa ttaatgccaa
     9481 ccaaccagca agctccatct cacccgcttc aggcacagtt ttttccagca ttcctcgatt
     9541 tgcatcacgc aaggtttgcc aaataatatc gttattttct tggcgttcac ggttcatttt
     9601 atagaaattg ttaagttgcg atcttgcacg cacaatgcca atcacatctt tctgattggc
     9661 agcaatacgg gcttgggttt gaatataacg caaacgctgt gccgaactta atagcggatc
     9721 ttgaatggct tttaattggc ttgttgcttg ctcgtttttc ccttgtaagg cggcaagctg
     9781 ggcggaaacc aaggcatact ctaacttttg cacctcgttc atctctgcgg tcagaatttc
     9841 actaaaggta ttttgagcct catattcctt attttcatca attaatttgc gtacagctaa
     9901 aagttgatac gaaattttat cttccgcttc tttggtttga tctgctttat taatatagaa
     9961 ttccgagctt gaataggctt catttttaat ggattcggtg acaggattta ccgatgtaca
    10021 ggcagaaatg aataatgcaa tcgccgttgg caccaatgct tttttcattg tatggtttaa
    10081 aatagttgcc attgtcagat cctcaataga atataatgtg ctaaatttaa tgtgaaatct
    10141 tacttatcaa acgagctaaa agcaaatgaa aaacagacaa aattcatctg aaatcaaccc
    10201 aaattacgga attttatata ttgttgccac ccccatcggc aatttaggcg atattaccca
    10261 acgagcgtta gatacccttt cctctgtcga tttagtcgcc gccgaagaca cccgccacag
    10321 cggtttattg ctgagccatt acggtattaa aaaaccgttt tttgccttgc acgaccataa
    10381 cgaacagcag aaagcggtcg ttttagtcga aaaattagca aaaggggaaa atattgcgtt
    10441 aatttccgat gccggaacgc cactgattag cgacccgggc tttcatcttg tccgtcattg
    10501 ccgccaagcc ggggtaaaag ttgtgccgat ccccggggct tgtgccgctg ttactgcctt
    10561 atgtgcttca ggcatagctt cagaccgttt ttgttttgaa gggttcttac cggcaaaaac
    10621 aaaatcccgt tgcgataaac ttaccgagct tgaaaacgag cctcgcacac tgatttttta
    10681 tgaatccacc caccgtattt tagacactct tgccgatatg cagactgttt ttggcgaaga
    10741 tcgctatgtg gtaatggcgc gtgaaatcac gaaaacgtgg gaaaccattt atggagatca
    10801 actgggtaac ttaattgaat ggctaaatga ggatagcaac cgaattaaag gcgaaattgt
    10861 tctggtggtt gaaggtaaac cgcaaagtag tgaggaagcc ttttccagcc aagcgatcaa
    10921 attactgaca ttactctgcc aagaactccc gcttaaaaaa gccgctgcca ttgtggcaga
    10981 aaccttcggc tataagaaaa atgccctgta tcaatatgga ttggagcatt ttgagtaaca
    11041 tacaagcggt cagattttgt gagttttttg cagattggca ctcccctctc tctgaaaaat
    11101 gtttctgaac gaaacatttc ccggtctcaa tactcgctac gctcgctcct tcggagccgt
    11161 tggcaaagcc aacgttcaaa tgtaaacatt tgtcccataa ggggagagag ctaaattatt
    11221 cgcttgtcga cccctctcca ctcgtgggag agggacagat tcttcttcgt tcagaagaaa
    11281 aatcagggag agggggaagt ttctcgcact aaattccgat aagcatacgc cataatcgca
    11341 aacatcaaca gcaagtaaag cggtaataat tgaatgctga tagcattagc aataaagccg
    11401 aaaatcggtg gcaataacag gacgccgata taggcacttg ccatttgcac gccgatcacc
    11461 gattgagatt tgtcctcgcc gaaaaacgca ggggtcgaat gaattaagca cgggaaaatc
    11521 ggggcacaac ctagcccgat aataattaaa cttgccagcg taacatattt gcctaacggc
    11581 aagcacagta tcgcaatgcc gactaagatc aaggctgaac caagtttaat catttgtctg
    11641 ttgctaaatt taagcgtcaa gaagccactt acgcctctgc caacggtaac gccgataaag
    11701 aaaatactgc cgaacgcagc cgcttgttct aagccgacat ctttaaccat tacaaaatag
    11761 ctactcgccc acagtccggc ggtttgttct acgccacaat agccaaaaaa agctaaaatg
    11821 ccatatttca cgcccggaat ttttagcgtt tcttttaagc tcatcggttt tgccgaatgg
    11881 ttgatttcag cggtaatctg cttgcgtaat ttccaaaaag gcagtgagca aaacagcatt
    11941 agcgttagcc cgatttgtaa cattgaaatg gtgaaatagc ctgcctccca gcctcgccct
    12001 tgcaataagg cgtagcctaa aatgtgcggc ccgatagaag ctccaacgcc ccacatacaa
    12061 tgcagccagc tcatatggcg gcttgcgtag tgaactgcta catagttatt caacgccgca
    12121 tcaaccgctc cagcccctaa gccgtaagga attgcccata aacataagat ccagaaagca
    12181 tcactgattg aaaagcccca caatgctaaa gccgttaagg caacgctgat gaccattact
    12241 ttgcctgtgc cgagatggta ggtcagtttg tccgacatta agctagaggt aatagtgcca
    12301 atcgacataa tcatcgagac cacaccggca taggaaagcg gaacagcaag ctgttggtgc
    12361 attgacggcc acgccgagcc taaaattgca tcaggcaacc caaggctgat aaaagagaga
    12421 taaataatag cgagtaggag gttagtcata gcttacaatc ggtcacaaaa agcatcgctt
    12481 tttgaacgtt ggctctgcca acgggagcga agctgtgaac aatccttaca aggattgtga
    12541 ataatttttg ataaattttt tgtaaaaaaa tggcttaagg agaccttaag ccaaatttta
    12601 ttatttcact tctgccaaat aggccttatt agcacggtca aaggtgtcta atacggcttt
    12661 gctcggcatt ggcgtgataa gtgataccac aatgatcatt agggtagcag caataaagcc
    12721 cgggatcatc gagtaaattt ccggtaaggc gagcttaagt gtaatatcgc cccaaaaatg
    12781 cacgattaac gcaccggtca gcattccggc aatcgcccca aaaccgttca tacgtttcca
    12841 gaatagtgaa agcaatacca caggcccaaa tgccgagccg aaacctgccc acgcattacg
    12901 cactaagcca aatactttgc tgtccgggtc ttgggcaata taaatagcta atgctgccac
    12961 cgcaagcacc atcaagcggc ttaaccaaac cagttcttta tcggaggctt gagggcgtaa
    13021 aatgcctttg tataaatctt cggtaatcgc acttgaacaa atcagtaatt gagcggaaag
    13081 ggtactcatt accgcagcaa gaatggcaga taataaaatg ccggctaccc aagggttaaa
    13141 taacaattta gctaattcaa tgaaaatttg ttccggattt ttgctgatat tgccgacttg
    13201 ctccgggtgt ccgaagaaat atgccatacc aaaataacca ataccgattg cacctaataa
    13261 gcaaatcacc atccaagtca tactgatacg gcgtgcattt tcaagagact tcacactttc
    13321 tgccgccata aaacgcacca caatatgcgg ttgtccgaaa taacccagcc cccacgccat
    13381 taagctgata atgcctaata cgctggtgcc ggtgaaaatg tcgttgtagt ctttttgtgc
    13441 catctcgcct gcacgatcaa ttaaggcttg catttcatca aaaccaccta agttatacat
    13501 cacaaaaaac ggggtaagaa tcagggcaaa aaccattaat gaagcttgaa tagtatccgt
    13561 ccaacttact gctaagaaac caccaataaa ggtgtaaaga atggtagcaa cagccccata
    13621 ccaaattgct tggtggtaag gtaagccaaa taagttttca aatactctcg caccggccac
    13681 gacgcccgat gcacagtaaa ttgcaaaaaa gagtaaaaaa atgaccgctg ataaaatctt
    13741 aattaaacgg gttttatcgc caaaacgatt gtggaagtat tcgggtaagg ttaaggcatc
    13801 gccactgtgt tccgtgtgag agcgtaatct gcctgcgact aatttccagt ttaaataagc
    13861 accgatagtt aaaccgatag caatccagcc ttctatcaaa ccgcctgcat aaacggctcc
    13921 gggtaatccc atcagcaacc agccggacat atctgatgca ccggcagaaa gtgcggtcac
    13981 aaagctacct aaacggcgac cgcctaaaat atagtctgaa aggttattgg taacacgata
    14041 ggcaataaag ccgatggcaa tcattcctag aatatagaca acaaacataa ttgttgttgg
    14101 atcaagacca aacattatta atgaatcctc aagatttctt attgtataaa gattaaagtg
    14161 agtaaagggt aaaagattac ctgaaataat caaaatggca acacaaaatt accgtccgcc
    14221 cagctcagct gaaatttttt ctgctgtttc ttgaatagcc ggtagtagat tttcccgccc
    14281 cagctgattt aaacgagcag ttgaaagcga aacagaaatc gcataatgga ctttttgttg
    14341 gtgatcaaaa atcgggcaag caatacaaga aacccctaat tcattttctt cgttatccat
    14401 tgcaaaacct tgacggcgaa tggtttccag ctcggtttgc attccgtcaa tcgtggtgat
    14461 ggtattgacc gtcagttttt gaatgatgtc cgatttagtc tgccaatatt gtggaatgta
    14521 atctgccgaa ccataagcaa gaaacagttt tcccattccc gagcaataga gttgcatttg
    14581 ttgcccgata taggctcggg tacgcatcat tccggtggta gcttctaatt tattgattaa
    14641 aatagcgtga tcgttttccc gcatcgcaaa atttaccgtc tcgcctaagg ttaaatttag
    14701 ggcttctaaa tgtggggcgg caatatgcaa aatgttaatc gaacttaagg ctcgctgccc
    14761 gattgccaaa catttggtgg ttaaacgata actgcccgca gtcggtgcag ggcggacgta
    14821 gccctcttgt tgtaagcctt gtagcagacg gtgaaccgtg cttttgttca gccccgaaag
    14881 ctcggctaaa tgggcaagcg gacagccgtt tgggaatttc gctaacaatt ccaatagtgt
    14941 taagccacga attaaacttt gatttccact cgattccttt tctttctttg cattcatttg
    15001 gctgctccca aaataatatg atctaacggc atatcccaac tctcaatcgg taattgttcg
    15061 acttgctgac attcgtgtgc caaaccgaca ctaatcagat gaggtgcttg agcaagggtt
    15121 ctatcataaa agccacctcc cattcccagc cgatttccgg ctttatcaca agcaacaagt
    15181 ggggtaaaaa tcatctctaa ttcttgcaac ggaaggatat ttctaacatc taatatcggc
    15241 tcttgaatcc ccaagcggtt aaattttaga atagttttgc aattgtaatt tacaaacaat
    15301 aattgaccgc ttgtaaaagg gtgcaacagc ggcagataca gctttttgcc ctgttgaagt
    15361 aattgttcca ttaaaggaat aggagaaatt tcaccgttaa aaggcaaata aaaggcaata
    15421 tgtgaggctt ggtaagattc aatcaatgaa agagcttgag gaataatgga ttcggctgct
    15481 tgagtttgct gaccggcagt taaactttgc cgtttaagcc gcattgattg ccgtaattgg
    15541 ctacgaagat cggttaaaga tgattgattc atataaagac ccgagatgcc gctaccagta
    15601 atggtccttg aaccagtcgg ttcaagggag tcaaacttaa ctgcttttag gcttcttact
    15661 cctaattaaa ttagggtaag cttgctcacc agcgttagat gtccaactca aagtttcaaa
    15721 ttatcggctc agggacgtaa ctcgtaacgc acaccccagg caagacttat agtaacggaa
    15781 tttgatgatt tttcctagta tttaatccca caaaatgcaa attctcaatc tttttggctc
    15841 tattcctaat caattcgatt aaaaattacc taattggatt gaaatttgcc aagcgaatta
    15901 tctaactgct caatacaagc caccaacaca tttttatttt ctgcattttg gcgttgggct
    15961 tgctccagtt cataatttaa attcagtgcc acaatcgcta acactttttc aagctgaata
    16021 atgccggact gctctttcaa taccgccaca cgctcttcca aacgctgtgc tgaagccagt
    16081 aaatgctctt gctgttcaac agggcattgc aagcgtaaaa cctgcccaaa aatctgtagt
    16141 tcgatattat ttgccgacat aaatacgaaa tcctcactta atcgcaaaat ttttgctata
    16201 ttatgccatt ctttagcaaa atcacaaata atcccattat ggctatcaca gattcccaac
    16261 aatttaaaca actggtatca caattacaaa ttgatgatac accggcagag tttcacggtt
    16321 ttttatgcgg tttaattgcc ggcggtattc aagatgagtc ttggaaaacc ctcacctacc
    16381 aatttaccaa tgacggacac gcattttcca tcgagccgtt aaacacttta accgattttt
    16441 atcagcaatt aagtgaaagc ttttcagaag ccaacacgct gtttagcctt tggttgccac
    16501 aaaacgaaga agatggtttt gccttagctg atggtatctc cgaatggaca aacagtttct
    16561 tacttggact tggcgttgct caacctaaat tacaacaaga aaccgatgag gttggcgagg
    16621 caatcgatga tttagatgaa atcgccaaac taggctacag tgacgatgat aataacgagg
    16681 aactactgga ggctggcgaa gaagtgttgg aatatctgcg agttttagcc ttattcttgc
    16741 acagccattt tgctttaggc gtgccgaaaa ccgaagaaaa gccaccatta cactaatgaa
    16801 taaatacaag cggttcaatt tcatctctat tttgcaaata tattatgcgg ggcgaaaaat
    16861 atttcgcccc taccaaaatc aaaggaaaaa ccaatgtcag aattaaaaaa cgatcgctat
    16921 ttaaaagcgt tattgcgtga acctgtggat atgaccccgg tctggatgat gcgtcaagcc
    16981 gggcgttatt tgccggaata taaagccacc cgagcagaag ccggcgattt tatgtcactc
    17041 tgccgtaacg ctgatttagc gtgtgaagtc accttacaac cgctacgccg ttatgaactc
    17101 gatgcagcta tcctattttc cgatatttta actgtgcctg atgcaatggg attaggttta
    17161 agttttggtg caggtgaagg ccctaaattt gcccgcccgg tggcaagcct caatgatgtc
    17221 aatcagctac cgattcctga tccggaagac gagttgcaat atgtaatgaa tgcggtgcgt
    17281 accattcgcc gagaattgaa aggcgaagtg ccactaattg gtttttctgg cagcccttgg
    17341 acactcgcca cctatatggt ggaaggtggt tcaagcaaag catttaccaa aatcaaaaaa
    17401 atgctttacg ctgagcctca cattctacac aaattgctgg acaagttagc tgacagtgtc
    17461 atcttatact taaatgccca aatcaaagcc ggtgctcaag cggtgatggt attcgacact
    17521 tggggcggtg tattggctca cgaggattac aaagccttct cattacacta tatgcacaaa
    17581 attgtggacg gcttaattcg agaaaatgaa ggacgtaaag tgcctgttac cctattcacc
    17641 aaaggcggag gcttatggtt agaagcgatt gcagaaacgg gctgcgatgc cgttgggcta
    17701 gattggacag tcgatattgc cgatgctcgc cgccgtattg gcgacaaagt tgcgttgcaa
    17761 ggcaatatgg atccaagcgt gctgtatgca agccctgaac gaatcgaaca agaagtaaaa
    17821 aacattcttg ccggcttcgg caacggcagc ggacacgtct ttaatcttgg acacggcatt
    17881 catttagatg tgccggtgga aagcccgaaa gtgtttgttg atgcgattca caactactcg
    17941 aagcagtatc ataaataatg gataaaatgc cctctctcct tgtgggagag ggacagattt
    18001 ttctttgttc agaagaaaaa tcagggagag gggcaagcgg tcatttttat acagaatttt
    18061 gcaaaatcgt tcccttctct ctgaaaaata aagaaggaaa tacaatgaga aacccgattc
    18121 ataaacgcat ggaacatttc gagccttggc aaaacaccac atttatggcg tgcctatgcg
    18181 aaagaatgta ccccaactat cagctttttt gtgaagtaac cgaacagcct gaaaaagcta
    18241 aggtattcca aaatatttta aatttagtct gggaatattt aaccataaaa ggggcaaaaa
    18301 ttaatttcga taaccaactg gaaaaattag aagaaatcat tcctgatgtg aacgaatatg
    18361 cgttttttgg tgtcttacct gcacaggaag cttgcgaagc cctttctgaa cttcttcaca
    18421 gtattatcgc tggttcaacc cttgaacaag caatccgcat cagccaaatt tcattaggca
    18481 cagttgccag ctatttggaa atgcaacaag ataaagaact gaacgagcaa gagctaaaga
    18541 attctgaaga aattcaagaa gaactggacg tacagtggca aatataccgc ttgctaaacg
    18601 aatgtgaaaa acgtgatctt gatctcattt ttgaacttaa agatgaaatc agaagcagcg
    18661 ggattagtaa tatcgggtta aatattaacc aatagcattg atatttgcaa aatcttgctt
    18721 aataatactt tgagaaatct taactttgaa ttaagctatc gcaaggtttc aataacttct
    18781 cagacgtttt acgtcattta ttaaaaacac atatcttaga ggataaaact atgaacaaaa
    18841 ctgagttaat cgatgctatc gccgctggtg caaacttaac caagaaagat gctaaagcag
    18901 cattagaagc aactcttgat gcaatctctg caagcttaaa agcaggcgac gctgttcaat
    18961 taatcggctt cggtactttt aaagtaaatg agcgtaaagc acgtactggt cgtaacccaa
    19021 aaactggtga agagatcaaa attgcagcag ctaaagtacc tgcattcgtt tcaggtaaag
    19081 cattaaaaga tttagtaaaa taattcttta aagatataaa aataaagcct ggattataat
    19141 ccaggcttta tttttagcgt gtttcgatag ctacagagaa ac
//
LOCUS       DANLUT010000026        18884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLUT010000026 DANLUT010000000
VERSION     DANLUT010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            31..2466
                     /gene="plsB"
                     /locus_tag="PXB38_000803"
     CDS             31..2466
                     /gene="plsB"
                     /locus_tag="PXB38_000803"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL5353150.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRPLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLESYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGSLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(2571..3134)
                     /locus_tag="PXB38_000804"
     CDS             complement(2571..3134)
                     /locus_tag="PXB38_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL5353151.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTAQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(3332..4231)
                     /locus_tag="PXB38_000805"
     CDS             complement(3332..4231)
                     /locus_tag="PXB38_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5353152.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNLEQLGAFTLTQAG
                     LSQSKCDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLLVNHNNQLFGILKGWQDLRLRPLIKAILLNPEHEWQVDDM
                     AAFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSE
                     PHFITAFKKQYCVTPSQYRQLNP"
     gene            4367..4708
                     /locus_tag="PXB38_000806"
     CDS             4367..4708
                     /locus_tag="PXB38_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5353153.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            4719..5072
                     /locus_tag="PXB38_000807"
     CDS             4719..5072
                     /locus_tag="PXB38_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5353154.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHSGYDDLIKAGLK"
     gene            5132..5770
                     /locus_tag="PXB38_000808"
     CDS             5132..5770
                     /locus_tag="PXB38_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL5353155.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            5905..7086
                     /gene="purT"
                     /locus_tag="PXB38_000809"
     CDS             5905..7086
                     /gene="purT"
                     /locus_tag="PXB38_000809"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL5353156.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSGIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(7178..8671)
                     /locus_tag="PXB38_000810"
     CDS             complement(7178..8671)
                     /locus_tag="PXB38_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5353157.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFSPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPTFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            8872..10719
                     /gene="ilvD"
                     /locus_tag="PXB38_000811"
     CDS             8872..10719
                     /gene="ilvD"
                     /locus_tag="PXB38_000811"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL5353158.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(10853..11203)
                     /locus_tag="PXB38_000812"
     CDS             complement(10853..11203)
                     /locus_tag="PXB38_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL5353159.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(11232..11897)
                     /locus_tag="PXB38_000813"
     CDS             complement(11232..11897)
                     /locus_tag="PXB38_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL5353160.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            12103..12651
                     /gene="pgsA"
                     /locus_tag="PXB38_000814"
     CDS             12103..12651
                     /gene="pgsA"
                     /locus_tag="PXB38_000814"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL5353161.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPIKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            12729..14567
                     /gene="uvrC"
                     /locus_tag="PXB38_000815"
     CDS             12729..14567
                     /gene="uvrC"
                     /locus_tag="PXB38_000815"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL5353162.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALALQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(14572..14847)
                     /locus_tag="PXB38_000816"
     CDS             complement(14572..14847)
                     /locus_tag="PXB38_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353163.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(14972..15325)
                     /gene="rplT"
                     /locus_tag="PXB38_000817"
     CDS             complement(14972..15325)
                     /gene="rplT"
                     /locus_tag="PXB38_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL5353164.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(15434..15631)
                     /gene="rpmI"
                     /locus_tag="PXB38_000818"
     CDS             complement(15434..15631)
                     /gene="rpmI"
                     /locus_tag="PXB38_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL5353165.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(15895..16437)
                     /gene="infC"
                     /locus_tag="PXB38_000819"
     CDS             complement(15895..16437)
                     /gene="infC"
                     /locus_tag="PXB38_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL5353166.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(16596..18395)
                     /gene="recQ"
                     /locus_tag="PXB38_000820"
     CDS             complement(16596..18395)
                     /gene="recQ"
                     /locus_tag="PXB38_000820"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL5353167.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(18504..18809)
                     /gene="cyaY"
                     /locus_tag="PXB38_000821"
     CDS             complement(18504..18809)
                     /gene="cyaY"
                     /locus_tag="PXB38_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL5353168.1"
                     /translation="MNTAQCHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         5486 a         3610 c         4132 g         5656 t
ORIGIN      
        1 caacaataac gattctaaaa ggatatttat atgtctggct tattaaattt ttatcgagct
       61 ttcctaaact taccactttc acttttagta aaatctcgct ctattccgac tcatccggtg
      121 gctgaactgg aactaaatct tgaacagccg attgtctatg ttctacctta tacctcgcaa
      181 accgatttat taattttaca aaaaaactgc ttggctttga atttgcccga tccgttgcaa
      241 gaaaatgtga ttgaagggca aacattgctt cgttttgtat ttttagatga aggtcgccgt
      301 ttttttaaat ctaaaggggc gaaaagtgag acagagtcga ttttttatcg ttatttagat
      361 ttacatcgtg ctaatgctga attagacgtc caattagtgc cggtttcggt attatggggg
      421 cgggctccgg gcaaagaaga tgcccgccat ttacaggtgc ttacctcatt ccaacgtttt
      481 ttatccatgg tttggtttgg gcgtgataat tttgtacgtt tctcccctgc agtatcgtta
      541 cgctatatgg taactgaata tggtgcagat gaaaaaatcg ctcaaaaaat cgcgcgtgtg
      601 gcgaaaatgc actttgcaaa attgcgttat tcagcaatgg ggcctcgttt accaaatcgt
      661 gatgcgatgt ttaataaaat cctgaattca gaggtgattc aagctgcgat tgcggaagaa
      721 gcgaagaaat catcgcctga aaaggctcgc aaagaagccg agaaaatcat taatgaaatt
      781 gccgctgatg taaaacacga gagtttgcgt gtagcagatc gagttctgag ctggctttgg
      841 aataagcttt atcaagggat caacgtgcaa aatgcagacc gtgtgcgtaa attggcatta
      901 gaaggtcacg agatcgttta tgtgccttgc caccgtagcc atatggacta tttgctccta
      961 tcttatctac tttaccatca aggattagta ccgccacata ttgccgctgg gatcaattta
     1021 aatttctggc cggcaggccc gattttccgt agttggggag catttttcat tcgccgtacc
     1081 tttaaaggaa atcgcctcta ttccaccatt ttccgtgaat atttagcgga attattctat
     1141 cgtggttatt cggtcgaata ttttattgaa ggcgggcgtt cacgcacagg tcgtttatta
     1201 gagcctaaaa ccggtatgat gtcgatgagc ctacaagcct tacagcgagg gctgaataga
     1261 cctttaagta ttgtgcctgt ttatatcggt tatgaacacg tcttagaagt cgatacttac
     1321 gctaaagagt tgagaggtgc ggcaaaagag aaagaaaatg cgggcttggt gctacgagtg
     1381 ctgaaaaaac tgaaaaattt aggtcaagga tatgtgaatt tcggtgagcc aattttggtg
     1441 aataattact taaatcaata tttccctgag tggaaagagc cttccgaaga tggacgacct
     1501 aagtggttaa atgaagccgt ggataatatt tcacatcaag taatggtgaa tatcaataaa
     1561 gcggcagcag ttaatgcgaa aaacttagtg gggtcagcat tattggcatc tcgccagcgt
     1621 gcattaaccc gtgaacaact cattgaacaa cttgaaagtt atattcagtt atttcgtaat
     1681 gtaccttatt ctaaagatat gacattacca actgaaagtg cagaagtgat gttgaatcat
     1741 gttattcatt tacctcgttc gggcgtttta attgaaaaag ataattttgg tgaactggtt
     1801 cgtttagaac gagaatctgc tgtgttaatg acatattaca gaaataatgt gcagcattta
     1861 tttgtgttgc cttcacttgt tgcaagtatg gtacttcatc atgaggctgt ttcgaaagat
     1921 gttgtgatta agtcggttaa tcgtatttat ccattcttgc aagcagagtt attcttacac
     1981 tttaagcaag aagaattaaa agcacatatt gaagcaatta ttgcggaact aagtcggcag
     2041 ggggtgatta aaaacgaaag tgatatgtta atgatcaatc gctcacatat tcgtaccttg
     2101 caattacatt cagctggtgt gcgtgaaatc cttcaacgtt attatattag cctaagtgtc
     2161 ttgttggagc agccaaatat tagtcgtggc tctttagaaa aagagagtag ttcaattgct
     2221 cagcgtttat cagtcttgca tggtattaat gcgccggagt tttttgataa ggcgattttc
     2281 tctaccttta catcaagtct aaaagcacaa gggtattttg atggtgatga taatttagcg
     2341 attgcaaaag ttaaagaaac ggaatcgttg ttacgtagtt tgatttcgat tgaagttcaa
     2401 cagaccattc aaggtgcgat ggctaaagtc gcagaatctg tagagaatcc taatatcgca
     2461 ggataataaa tcaaagaagg gcgctaacaa gcgctcgttt cttgcaattt tgttgccaaa
     2521 aataaaagct gaatgcgcga ccacattcag cttttttact tcctatataa ttattttggt
     2581 tcaccgattg gtaaaacagt cttaccaaaa ctttcattaa taatatccgc agcggctaag
     2641 tagaacgcta agaatgcggt taataaaccg aagttaccac caatgttagt tagggtggtg
     2701 ttatgggtaa aatcacctgc ggctaaaagg tagaaagtaa tggttaaact taagaaaata
     2761 gcttgtaatg cacgggcttt tgctagtgtg ccgatgaaca tcataagtgt gaatgttccc
     2821 caagctacta agtaccaacc aacgaattct gccgatacat tcgcagcaaa gaacacttta
     2881 aataatgcaa aagaccacca gaatgcacca tagctggtaa acgcagtaaa gccgaacgtg
     2941 ttacctttag caaattcaaa catacctgca atcatttgtg ctgtgccacc gaaagcaaat
     3001 cccattgcta aaactaaacc tacgttttca ccgctgaatg taccgttatt gattaggctt
     3061 agtaaaaatg tagtaagtgc aaaaccgcat aaaccgagcg gagccgggtt agttcctgaa
     3121 tttggagctg acattgaaaa cctctgttat attgttacac cataagtgtg gtaattgttt
     3181 atctacgccg ataaatcaga cgttatgtgc ctaaaattta gggcgataaa gtatagcgat
     3241 tttgcagtaa attgactaga aatttccgag acaagcggtg agatttttgc aaaattttgc
     3301 caaaaaatga ccgcttgttg ttgtcattta gctatggatt taactgccga tattggctgg
     3361 gtgttacgca atattgcttt ttaaaggcgg taataaaatg cggctcggat tggaagccgc
     3421 aagataaggc gatacttaat accgacccag cttggctttt gagcagcatt gctgcttttt
     3481 gtagcctaat tttgtgtaca aaagcatgtg ggctaataca taaatgtttg ttaaataagc
     3541 ggactaactg ggcacgagaa aggtggataa atgccgccat atcatcgact tgccattcgt
     3601 gttcgggatt aagcaaaata gctttgatca aaggtcttaa gcgtaagtct tgccaacctt
     3661 ttaaaatacc gaataactga ttgttatggt taactagaag atgttctcgt aagatcatag
     3721 ttaaaataac aacagcaagc gagttaacca cagattttac ggctaaatta ggtgtttctg
     3781 cttcttgttt tagaatatct aacattgctt ttaatggtgt ctcggcaact tgaaatacga
     3841 tcatttcagg taagctttcc attaattcgg cttgatggtc ataataaaaa tggaggcaga
     3901 acatatcgca ttttgattga gaaagtcctg cttgggtgag tgtaaatgca cccaattgtt
     3961 caaggtttac cgcatttttg ctggtcaaag gctgtatttg actacgtaat gtatgatcgg
     4021 caaatctggg gaaaaataca atatctccct gtttaaggtg atgggttttc ccattatgtt
     4081 gtagataagc ttgcccatag ctgatgatat gagcgattgc ttgtccggtt tgatgcggat
     4141 tctcaagttg ccaatctccc tgtaactgac atttcacact gattccggct gagatttgag
     4201 cgaaagctag aagcctatct aatatatcca ttgttcattc cttatatttc caccttaaat
     4261 tgcgattatt tcattataat atgagctgat ttgataataa agtttatcag ataaacgcaa
     4321 taataaatgc gttttttcat attattcact ttaggaggaa atcaatatgt cttcattcca
     4381 aaattggaca gaacacacag ctcacgttaa gcaatctttt ggtaaattag ggcaaaaaca
     4441 ccctaaaatg cttgaagctt ataaagcatt aggtacagcg gccgcagcgg aagcattaga
     4501 tcacaaaact cgtgaattaa ttgcattagc agtagcgatt acaacacgtt gtgaaagttg
     4561 catcagtgta cacgcagaag aagcggcaaa agcaggtgca accgaaagcg aaattgccgg
     4621 tgcattagcg actgcgattg cattaaatgc cggtgcggca tatacctatg ctttacgtgc
     4681 attagaagcg gtggaagagc aaaaataagg agcaataaat gaagaaattg gcttggattt
     4741 taggctttgc agctatgatg ccaatgatgt ctagtgctaa acaagcatca gttcagcaag
     4801 tgcaggctga aaaagcagcg ggcatttgga ttgatgtacg ttctgctgaa gaatttcagc
     4861 aagggcattt aaatggtgca attaatgtaa cgcatactga aattgcacaa cgtatcgcag
     4921 aagttgctcc agataaaaat cagccgattc atctttattg ccgctcgggt catcgagctg
     4981 aagcggcgct taatgagcta aaaaaattag gttacagcaa tgtaactaat catagtggtt
     5041 atgacgatct gattaaagcc gggttgaaat aactgttttg agtgccaagc atttgcttgg
     5101 cacttttcgt ttatatctga ggttaaaaat tatgagtgct tttaacaatt ttgttaattt
     5161 tgttgcaaat attgttgctc caatgcaacg ccaattcatt aattttgtgc gtattgctat
     5221 ttgtattgtg atggtttgga ttggtggttt aaaagtctgc caatatgaag cagacggtat
     5281 tgcccatttt gtatcgaata gcccattctt tagttatatg tacaaaaaag gcccgaactt
     5341 agtcgatgat ggcacaggta aaatggtgat ggaatacacc cttcacaaaa atcctgaagg
     5401 caaaatggtg gcaaaaaaca tcgaatggca taaagaaaat ggcacttata ccgcttctta
     5461 tatcatcggt gcaactattg tgacagttgg tttattaacc ttatccggca tttggttccc
     5521 agtttccggt atggctgggg gcttactcac ttttggtatg tcgattgtta cactctcgtt
     5581 tatgattacc acccctgaaa tttgggtgcc gaatttaggt ggggatatgc caacccctgc
     5641 acacggtttc ccatatctgt cggcagtcgg tcgtttaatt gtaaaagatg tgattatgat
     5701 ggcaggcggc ttggtggccg cagcggaatg tgcaaatcgc attttagcca gacgtaaagc
     5761 gattgcttaa ttaatagtgc taatgcaagc ggtcattttc ttgtaaaatt ttgcaataaa
     5821 atgaccgctt gttttttgtc aatttgccat aatttcaagt ataatccaat tacgcaatcg
     5881 tttgctttta tggagaggaa taaaatgaca acaatcggta caccgttaag aacgaacgct
     5941 acaaaagtga tgatgttagg ttcgggcgag ttggggaaag aagtggtaat agagctgcaa
     6001 cgcttaggcg tagaagtgat tgcggtggat cgttatgaca atgcacctgc acagcaagtg
     6061 gctcaccgtg cttatacgat ttcgatgtta gacgggaatg cattgcgaga tttggtggag
     6121 aaagaaaaac cggattttat tgtgcccgaa gtagaagcca tcgcaactgc aaccttggtt
     6181 gagttagagc aagagggata taacgtaatc ccaacggcaa aagcaacgca attaacaatg
     6241 aatcgagaag gcattcgccg attggcggca gaagagttgg gcttaaaaac gtcgccttat
     6301 cgttttgtgg ataattttga acagttccag caagcgattc aagaaatcgg cattccgtgt
     6361 gtggtcaaac cgattatgtc ttcttccgga cacgggcaat cagtaattaa atctgaagcg
     6421 gatattcaac aggcttggga ttattcgcaa cagggcggac gtgccggcgg tgggcgtgtg
     6481 attgtagagg gttttatcaa attcgattat gaaattaccc agcttaccgt tcgccatatt
     6541 cacggcacgt cgtttttagc tcccatcggg catattcagg ttgatggcga ttatcgtgaa
     6601 tcttggcaac cgcagcaaat gtcgggcatt gcattgaaaa aagctcaaga aaccgcagaa
     6661 aaaattacct ctgcactggg cggaagaggg attttcggcg tggaactttt tgtctgtggc
     6721 gatgagatta tttttaacga agtctcccca cgtccacacg ataccggaat agtaacaatg
     6781 gcatcacaag agctttctca atttgctctg cacgcccgtg cgattttggg cttaccgatt
     6841 ccggaaattt accgcatcag cccggcagct tctaaagcga ttgtggttga agggaaatcg
     6901 gataatgtgc gttttggcgg tgtagataag gtattagccg aaatcgggac gaatatccgc
     6961 ttattcggta aaggcgaagt aaacggacac cgccgattag gggtaattct tgctcgtgat
     7021 gaaaatacag tgagagcatt agaaaaagct cggcgagctt atgataagtt agatattcaa
     7081 ttataaagtc aggattttga tattcgttga tagtaggcat tttatgccta ctatcctata
     7141 ggcctctaat caaattggat gaaaaagttg aagattgtta atcctctttg ccgagaattt
     7201 ggttcacttc gctcttatac aatactgctt ttgctccaaa cacggcttgt acaccgccac
     7261 cgacttccag cacgtcaatc gcaccgagtt ttttcagtgt tgctttatcc acggctttca
     7321 cctctttcac tgccacacgc agacgggtaa tacaagcgtc cacattttcg atattatttg
     7381 cagagccaag agcggcgata attttatggg cattttcagt cagtgagctg gtttgttgtt
     7441 cgactacctc ttcactctct tccgcacgtc ccggtgtcat tacgttgaat tttttgatca
     7501 ggaataggaa cgagaagtag taaagtgccg cccacggcaa gccgactatg atcactcgaa
     7561 gccagttagt gttctcgttg ccttgcaaaa tgccaaacag ggtgaagtcg atcacgccac
     7621 cggagaaggt gttaccaatc gagatgttga gtaagtctgc aatgtagaac gacacgccgt
     7681 ctaaaaaagc gtggaacaca tagagccacg gggcaacaaa caggaacata aattcaatcg
     7741 gctcggtaat gccggtgata aaagaggtga gcgctgcacc taagaacaga ccgctaatcg
     7801 caccacggcg ggctttcggc acagcgtgat acatcgctaa acaggcggca ggtaagccaa
     7861 acatcatcgt atcgaaacgt ccagcgaaga aacgtgtacc ttcggtaaat aagccttgat
     7921 gggttggatc ggcgagttgg gcgaagaaga ttttttgcgc cccgataatg gtttcaccat
     7981 ttaccacttc tgttccgccc aattcggtgt accaaaacag cgggtagatc atatggtgta
     8041 agccgaccgc accgcttaac cgcattaaga aaccgtagaa aaaggtgccg atttcgccca
     8101 tttccgcaat cccttgccct gctgaaacca gccactgttg gaaagtcggc cagatcaaaa
     8161 agaacactgc cccgacaaaa atcgcagcaa aggcggtcac aatcggcaca aaccgagagc
     8221 cgccaaagaa gccgagaatt tgcggcagct gaatgttgtg gtatttgtta tgcagtttca
     8281 ccgtaatcaa gcccatcacc agcgagccga tcacaccggt atcaatccct ttggtttcag
     8341 gagaaaacag cggaatgagg gcagaaatcg tgcctgtcat aatcaaataa ccgaccactg
     8401 ctgccagtgc cgctacgcct ttatctcgtt ttgctaatcc aatgcctaaa ccgatacaca
     8461 gtaataatgc aaggttgcca aacaccacac tgcctgccga tgccataatc tggaaaatgc
     8521 cctgtaaagt cgggttatcc agtatcgggt aggcttgcac cgttgcctta ttcgacaaag
     8581 ctccgccaat ccctaacagc aaaccggctg ccggtaaaat cgcaatcggc agcataaaag
     8641 cttttccgac ttgttgcagt tgtttgaaca taaaatttct ccttttttat ggttgtattt
     8701 gatggtttat agcatactga aatttagccg tatgaggtgt gatataactc acagatttgc
     8761 aaaattttta gcaaattcga ccgcttgtaa aaaaattacc gcttgcggaa aaattgaagt
     8821 agaattaagc atttttttag caaacacaac ataaaaaatt tggagaagat tatgcctatt
     8881 ttacgttcag caacttccac tcagggtcgt aatatggcgg gggctcgtgc attatggcgt
     8941 gcaaccggta tgaaagaaaa tgattttggt aagccgatta ttgcagtggt gaactcattc
     9001 acccaatttg tgccggggca cgtccactta aaagatatgg ggcagttggt tgcggcagaa
     9061 attgaaaaag ccggtggggt ggcaaaagaa ttcaacacca ttgcggttga tgacggcatt
     9121 gcaatgggac acggcggaat gctttattct ttaccaagcc gtgatttaat tgcagacagt
     9181 gtggaatata tggtgaatgc tcactgtgct gatgcgatgg tgtgtatctc taactgcgat
     9241 aaaatcaccc cgggaatgtt aatggcagca atgcggttaa atattccgac tatttttgtc
     9301 tctggtggcc cgatggaagc cggaaaaact aaactttccg atcaattaat tcgcttggat
     9361 ttagtcgatg caatgatcga aagtgccgac ccgaatgtgt ctgatgaacg tattgatgcg
     9421 attgaacgta gtgcttgccc gacttgtggt tcttgttcag gtatgttcac cgcaaactca
     9481 atgaactgtt taactgaagc tttaggctta agtttaccgg gcaatggttc aatgttggca
     9541 actcatgctg accgtaaaga gcttttccta agagcaggtc gtgaaattgt ggaactttgc
     9601 cgtaaatatt accaacaaga cgatgagagc gtgttacctc gctcaatcgc taccttcgat
     9661 gcatttgaaa atgcaatgag ccttgatatt gcaatgggtg gttcaagtaa taccgtgctt
     9721 catttactag cgactgctca agaagccggc gttgatttta aaatggaaga tattgaccgc
     9781 ctctctcgtg tcgtgccgtg cttaagtaaa attgccccga ataccaataa ataccatatg
     9841 gaagacgtac accgtgccgg tgggattatg ggcttgctgg gcgaattaga tcgtgcaggt
     9901 ttaatccatc gccacgttaa aacagtgcta ggtttaacga tagaagagca actgaatcaa
     9961 tacgatatta ttcgtaataa agatgaagat ttacacaaat tcttccgtgc aggtccggca
    10021 ggaattcgta ctactaaggc tttctcgcaa gattgccgtt gggacactgt tgatgatgac
    10081 cgtgtaaacg gctgtattcg caatgtggaa aatgctgtga ccaaagaggg cgggttagcg
    10141 gtattatttg ggaatattgc agaagatgga tgtattgtta aaaccgcagg ggtagatgag
    10201 tctatttgga aattcactgg caccgcaatc gtgtttgaaa gccaagaaga tgcggtagca
    10261 ggtattttag gcggaaaagt gaaagaaggg catattgtga ttatccgcta tgaaggtccg
    10321 aaaggcggcc cgggtatgca agaaatgctt tatccaacta gttatttgaa atcaatgggc
    10381 ttaggcaaaa aatgtgcttt attaactgac ggtcgtttct ctggcggtac ctcagggtta
    10441 tctatcggac acgcttcacc ggaagccgct tcaggaggag cgattgcctt aattaatgat
    10501 ggcgatacgg tggcgattga tattccgaat cgttcgatta acttaatggt ttcagatgaa
    10561 gaacttgctg ctcgccgtgc agaaatggaa gcccgtggcg ataaagcgtg gcagccgcta
    10621 aaacgtgagc gagaagtgtc gtttgcacta aaagtgtttg gacattttgc cacctctgct
    10681 gataaaggtg cggtgaggga taaatcgctg ttaaagtaaa taaattagaa aaaagaagca
    10741 tttcaataat atattgatct gctctttatt cagctgaata tttaatctag ctgaatggag
    10801 agcagatcga tagcctaatt tacatctttt tgttttgata cagggaaatg tattacaagc
    10861 attttgccgg ttttggcaga cctgcaattt tagtggcttg ttttgcagga ccatcaggaa
    10921 acaagcgttg taaataacgg ctgttgcctt tttcttcacc gaatttttgt gccattgtct
    10981 ttaccagcat tcgaattgct ggtgaagttt tgtattcttg gtagaaatcc cgcaccagat
    11041 aaataatttc ccaatgttct gcggttaagc taatttgctc tttttcggcg attttttctg
    11101 ctaattctac agaccaatca tttaaattag ttaaatagcc tgaagcatcg gttgggtatt
    11161 ggatattatt taattcaatc gtcatcaaat aaaaatgcca cataatgtgg cattcctctt
    11221 aaactaaaac gctagtcgtc actacctagc acaccgaaga tttgtaagaa gcttacaaat
    11281 aggttgtaga tagacacata taaatcaacg gttgcacgaa tgtagttggt ttcgccaccg
    11341 tgaataatgt tgctggttgc cagtaaaatc gcaccgcttg agaaaatgac aaacaagctg
    11401 cttagggcta aacttaatgc cggaattgct aagaagatat tggcaataat accgactaat
    11461 aataccacaa acagggcaac catcattccg ctgataaagc tcatatcttt tttggtggtt
    11521 aatacataag ctgaacaagc gaagaaaacc aatgcggttg caccgaatgc aagggcgaca
    11581 atatccccta aacccgcacc gatgtaacgg tttaaaatag gacctaaggt atagcctaag
    11641 aagccggtta aagcaaatac gcttaagata cccgcactgc tgtttgaggt ggcattcgtc
    11701 aagaaaagta agccgtaaaa gccgaccaat aatccccacc acggcatagc cggtgcgttc
    11761 atttgaattg caacaaaagc aacaactgcg gagaaagtca gggtcattgc caataacata
    11821 taggtattgc gaagcacttt gtgggtgcta attagagatt caccagttga atagctgtga
    11881 gctaaacgat tttccataaa aattccttct gtttttgtgt ttaaatcgga acatccgatg
    11941 gattaatatc tatggataaa tttccataaa tcaagaagta aggtagccgt aatttattgt
    12001 aaagtcaatg cgattttgta acagaagagt aaaaaaaaac atttagttgt gttacactta
    12061 ataccactct actttatatt ccttttcatc gatgaattcg ctatgaagct caatttccca
    12121 acttatttaa ccttatttcg ggtaggatta accccacttt ttattgtggc tttttatctg
    12181 ccgataaaat atgcgcctga aatttcaaca cttatttttt ttattgcatc gattaccgat
    12241 gcctttgacg gctatttagc acgcaaatgg aatcaaacca cccgacttgg tgcattttta
    12301 gatcctgttg cggataaagt cttggtagct gttgcgtttg tctgcgtggc ggagtattac
    12361 catacttggt ggattactat tccaatctgc attatgattg cccgtgaaat tattatttcg
    12421 gctttgcgtg aatggatggc ggagcttggg gaaagggcca gtgttgccgt ttcgatttgg
    12481 gggaaagtaa aaacgactgc tcaaatgctc gcattaggtg gaatgttatg gagacagaac
    12541 caactaatgg agattttagc ctttattctg ctttatattg cagtgggttt aacgatctgg
    12601 tctatgatgc agtatttaaa tgcttcaaag aatagtctat tgaagtcata agcggtcata
    12661 tttttattct tttttgcaat ttgtagagtg gaaatatcgc tctacaattt tcaattttat
    12721 caactctaat gtctgaattt aacgctaaat ccttcctgtt aaatgtgcct caccaaccgg
    12781 gtgtttatcg tatgtatgat agtaaaggca cgataatcta tgtgggtaaa gccaaagatt
    12841 taaaaaagcg tttagccagc tattttcgta gccaactttc cagtaaaaaa acggaagcct
    12901 tggtggcaaa tcttgctaat attgaaacga cgatcactca ttctgaaaca gaggcgttac
    12961 tccttgaaca taattatatt aaggaaaatc agccgaaata taatgtgttg ctcagagatg
    13021 acaaatctta tccttatatt ctgttaacta aacataagca tcctcgttta acagcatttc
    13081 gtggtagtaa aaagatcgcc ggtgaatatt ttgggcctta tccgaatgtt acggcagttc
    13141 gggaaacact gaatttattg caaaaaattt ttcctattcg tcagtgtgaa gatacttatt
    13201 ataaaaaccg ttcacgacct tgcttacagt atcagatcgg acgctgttta gccccttgtg
    13261 tagagggctg ttattcaccc gttgaatacg atcagcaggt taatttggtt cgtttgtttt
    13321 tacagggaaa agatcaccaa gtagtcgagc atctggtaca gaaaatggaa gatgcggcgg
    13381 aggctttgga ttttgaaggt gcggcacgtt ttcgggatca aattcaatca gtaagagcgg
    13441 tgcaagaaaa acaattcgtc tctaatgata ggctagatga tcttgatatt atctcgatcg
    13501 tttatcaaaa tgggattgcc tgtgtgcata tcttatttgt taggcaaggt aaggtactag
    13561 gcaatcgttc ttactttcca aaagtgccaa gtaatacaga tttaaccgag ctcgcagata
    13621 cctttgtcgg tcagttttat ttacaaatga accagcaccg caccatacct aaccaaattg
    13681 taattgatca tcaattaagt gaatctaagg cactcagtga aattttaagt gagcaagcag
    13741 ggcataaagt cagcatttta gataatgcca tcagaggtga taaacagcgt tatttagctt
    13801 tagcgagaac taatgcaatg gcagcattag ctttacaact taagcaagaa tcccatattc
    13861 aaagccgtta tcaggcattg aaagaaatgt tgaaaatgtc agagattaaa agaatggagt
    13921 gctttgacat cagtcataca atgggcaacc aaacagtggc ttcttgcgtg gtgtttgatg
    13981 aaaatgggcc gctaaaatcg gattaccgcc gttttaacat tgaggggatt accggaggtg
    14041 atgattatgc agcaatggag caggctctct tgaaacgcta taatcgagaa ttaccgccag
    14101 aaaagatccc tgatattatt tttattgatg gtggcaaagg gcagttgaac cgagcgttag
    14161 atgtcttcgc taaacttgat gtggaatggg ataaatcgaa accgctttta attggtgtgg
    14221 caaaaggcgt agaacgtaaa gctgggctgg aaactttaat tatcagcaaa tgggataaag
    14281 aaattcactt accgccagat agtcttgcct tgcatttaat tcagcatatt cgagatgaat
    14341 cccaccagca tgccattagt gggcatcgta aaaaacgcca aaaggccttt accgaaagtg
    14401 gattagaatc tattgccggt gtcggtgcaa aacgccgaca agcgttgcta aaatatttag
    14461 gcggaatgca gggggtgaag tctgcaacct tggaagagat tcaatcagtt ccgggaattt
    14521 ctaaagcgtt ggcagaggtt atttttgata cattaaaaaa tagttaaatt atcaatagcg
    14581 atatcgcttc cagccgtaat ggtagcccac tcctatgctt gggtaaatta tagggtgaat
    14641 tggcagattt atgctttctg agcgtttatc gctttggttt aatggctcat catgttgctt
    14701 tgtattttta tcaacagttt gcttattgat tactcgttga tggtaatcct gaactgcttg
    14761 catatccatt ggtactgtgc tttgttgttg gggtgtcgaa caggcggtta gtgcaacgct
    14821 caatccgagt aaaattaatt ttttcatatc atttccttat attgcaaaat attttgcttt
    14881 tttgaccgct tattttgcta ttaattctta aaaagattat tttatccata aaaaaggacg
    14941 cactaggcgt cctcatttct attctttaaa attaaagagc agattttgct ttttcaacta
    15001 aagctgcgaa agcaactttg tcaaatactg cgatgtcagc taagatctta cggtcgattt
    15061 caacagatgc ttttttcaag ccgttgatga atttgctgta agataaaccg ttttgacgag
    15121 ctgctgcgtt aatacgagca atccataatt gacggaattg acgtttacgt tgacggcggt
    15181 cacggtaagc atattgagca gctttaacta ctgcttggaa agcaacgcga tacacgcgtg
    15241 aacgtgcacc ataataacct ttagcagcct taagaacttt cttatggcgt gctcttgcaa
    15301 taacaccacg ttttacacga gccattattt aatctcctaa ttgtctattt tgattggtgg
    15361 tcgtcatcac gacctttact aagaattcta tccgtacgtc cgtactttac tacactacgc
    15421 taacctaaaa ggcttatgcg tatggtaagc acgctactac taaaacttgg tcagctttcg
    15481 ctaccattga tttgtgacgt aattgacgtt tacgtttagt ggttttctta gtcaaaatgt
    15541 gacgtaagtg agattgttta cgtttaaaac cgccggaagc tgtttttttg aaacgcttag
    15601 cagcaccacg tactgtttta attttaggca ttgttaaaaa actccgcatt gtttgttaga
    15661 tattatgaaa ataaggcgaa ttttgtgaac aaaattactt ggaagcactt attctccgct
    15721 atacgatttt catcgttaaa aagtcaagca ggctgctgag tttgcctgtt gagcattttc
    15781 tctttcttgg ctaggcaaaa aagcttgcga attttagcga aaatataacc gctatgcaag
    15841 ccaatttaag ctttatcaag aaaaaagcac attaaaacaa tgtgcttatc gaaattattt
    15901 cttcttaggt gcgatcacca tcacaacttg gcgaccttcc aatttgcctg gggctgactc
    15961 taccattgca atttctgcag tatctgcttt gacacgttct aaaacgtcca taccgatttc
    16021 ttggtgagcc atttcacgac cacggaaacg cactgtgatt tttactttat ccccatcttc
    16081 taagaaacgg ataatgctac gaagtttaac ttgataatcg ccatcatcag ttcccggacg
    16141 gaatttgatc tctttaactt gaacaacttt ttgttttttc ttttgttctt ttgctgcttt
    16201 ctctttttcg tagatgaact taccatagtt cataatacga caaactggtg gttcagcatt
    16261 tgggctgatt tccactaaat ccaattcagc ttcttctgct ctatttagag catcttgaag
    16321 tgatacaata ccaacttgtt cgccgttttc atcggttaag cgaacttctt ttacgccacg
    16381 aatttcgtca ttaagacgat gtgcacgatt tgattgaaca cgttttacag gtttaatagc
    16441 cttattcctt ctagtaaatt tttgcttaaa ttttaccgct tgagagcgta taaatatttt
    16501 agattgcttg ttttaagtga ttaaaaaaca gctaaacgtg cggattctat aagattttca
    16561 gtgcttatgc aataataaag cccttattta actgcctatt ttcggttatt ttgatattct
    16621 ttgattaaac tcataaatgc ttgcccaaat cgttcaaatt ttcgttcacc aacaccatta
    16681 atttctaaca tttccacttt tgaagtcggg agaaattctg ccatttcttg caaggtggca
    16741 tcgttaaaga cgatataagg tggaatattt tcgaggtcag ctatctgctt gcgtaaaaaa
    16801 cgtaagcgtg cgaataggtc tttgtcatag cgatgacttg cttgtttttg cacaaatgca
    16861 gtcgcagata tacctaaacg tggcaatgca agctgaagtt gcttttctcc acgcaaaaac
    16921 ggtctggcac tttcggttaa ttgcagagcg gaatggttag caatattttg aataatcaac
    16981 cctaaatgaa tcagttgccg caccacattt tgccaataat gttggctttg ttcttttccg
    17041 ataccataaa cggaaagttg atcgtgttga tgttcacgaa ttttgagatt gttcattcct
    17101 cgcaataccg caataatatg gtgctgaccg aaaatttgac cggtgcggta aatcaccgac
    17161 atcacttttt gggcatcaag taagccatcg tattgttgcg gtggatctaa acaaatatcg
    17221 cagtttttgc attgctcttg gcgatgttcc ccaaagtagt tgagtaagac taaacggcgg
    17281 caagtctgtg attcggcgaa atcgccaatt gcctgtaatt tatgctgttt aatatttctc
    17341 tgttcgcttt ccggctcttc caataatatt ttttgtaacc aagcataatc gctaggatca
    17401 taaaaaagca cggcttcaga agggagatca tctcgcccgg ctcgtccggt ttcttgatag
    17461 taagattcga tagagcgagg taaatcgaaa tgtaccacaa aacgtacgtt ggatttgttg
    17521 atccccatac caaacgcaat agtggcaacc acaatttgaa tatcatcacg ctgaaaggca
    17581 ttctgcactc gttctctctg ttcaaaactc ataccggcgt gatagcccat cacgctgatt
    17641 ttacgggctg agagtttctc ggtgatttct tccacttttt tgcgactgtt gcagtaaaca
    17701 ataccgcttt tgccttgctg tttgctgatg aatttaatga gctgttcaag cggtttaaat
    17761 ttttcctgca cggtgtagcg aatattgggg cgatcaaagc tgcctaaata gatatgtggg
    17821 ctatttaagc gtaaatgatg cagaatatcg gagcgggttg ttagatctgc cgtggcggtg
    17881 agtgccatca acggcacatt cgggaaagtg tttcgtaagc cacctagcag ggtatattca
    17941 gggcggaaat cgtgccccca ttgggaaaca caatgggctt catcaaccgc aataaagctg
    18001 attttacata gcgaaataaa gtggaaaaag ccttgagtca ttaccttttc aggggaaaga
    18061 tagagtaatt ttaattgacc ggataaggct ttttgttcca caagttgctg ctcttcgagc
    18121 gtttgagtgg agttaagata agctgcttca atgccgttgg tgataagttg atccacctgg
    18181 tctttcatca acgaaataag cggcgaaatc accaaagtga tgccgtctag gcacaaagcc
    18241 ggcacttggt agcaaaggga tttgccaccg cctgttgtca taatcacgag gcaatcacga
    18301 ttttccaaca cggcattgat aacttcttct tgcccgtctc ggaatttttg atagccaaaa
    18361 atattattta aaacagaaat tgcggtggtg ttcattggta gttggttgct acttatgata
    18421 gtactcgtct tctgagagta tcttttaaaa tgaaaataaa gcactcatca aagacgagtg
    18481 ctgtcttagt taacaattag gcattagaaa gaaacgcttt ctccgtgtcg agcaaaagct
    18541 tcttctaaat gttgccagaa cgagcgacct tcatctgtta cccattcgcc ttctacattt
    18601 ttaaagtgga aaccacccaa tttgctggca agccataatt ccagcattgc ctcttgttta
    18661 ttaatgataa cttgcgattc atcatcaaag gttaaggtgc agaccgctcc ttggatttca
    18721 gtatcgactg ataatccttc gtcataaatt ttttcttcaa tttgttgcca tacttgctct
    18781 acggcttggt ggcattgtgc tgtgttcatt ggtgtatcct tatttgaatg ttatataagt
    18841 agtaaatact ttttgtttta gctgtttaaa tggtctgtaa agtt
//
LOCUS       DANLUT010000027        18858 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.027, whole genome shotgun sequence.
ACCESSION   DANLUT010000027 DANLUT010000000
VERSION     DANLUT010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18858
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            29..979
                     /gene="tal"
                     /locus_tag="PXB38_000822"
     CDS             29..979
                     /gene="tal"
                     /locus_tag="PXB38_000822"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL5353169.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1041..1316)
                     /locus_tag="PXB38_000823"
     CDS             complement(1041..1316)
                     /locus_tag="PXB38_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5353170.1"
                     /translation="MKKLSLAVLASLMLAACTADVYSDKGNATVLSSKAVSNDVVELT
                     VQRDNGETVTLTREYDAHAAVGARVHLADEIKNEDSDLKTIRRYEFK"
     gene            complement(1347..1811)
                     /locus_tag="PXB38_000824"
     CDS             complement(1347..1811)
                     /locus_tag="PXB38_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5353171.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1832..2431)
                     /locus_tag="PXB38_000825"
     CDS             complement(1832..2431)
                     /locus_tag="PXB38_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5353172.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADDSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2465..4192
                     /gene="argS"
                     /locus_tag="PXB38_000826"
     CDS             2465..4192
                     /gene="argS"
                     /locus_tag="PXB38_000826"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL5353173.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHVSEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SSDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDEDALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4382..5548
                     /gene="cgtA"
                     /locus_tag="PXB38_000827"
     CDS             4382..5548
                     /gene="cgtA"
                     /locus_tag="PXB38_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL5353174.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFLYERR"
     gene            5633..6250
                     /locus_tag="PXB38_000828"
     CDS             5633..6250
                     /locus_tag="PXB38_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL5353175.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6297..8255)
                     /locus_tag="PXB38_000829"
     CDS             complement(6297..8255)
                     /locus_tag="PXB38_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL5353176.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8252..8809)
                     /gene="ccmE"
                     /locus_tag="PXB38_000830"
     CDS             complement(8252..8809)
                     /gene="ccmE"
                     /locus_tag="PXB38_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL5353177.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIELTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(8995..9192)
                     /gene="ccmD"
                     /locus_tag="PXB38_000831"
     CDS             complement(8995..9192)
                     /gene="ccmD"
                     /locus_tag="PXB38_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL5353178.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9207..9944)
                     /locus_tag="PXB38_000832"
     CDS             complement(9207..9944)
                     /locus_tag="PXB38_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL5353179.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10144..10806)
                     /gene="ccmB"
                     /locus_tag="PXB38_000833"
     CDS             complement(10144..10806)
                     /gene="ccmB"
                     /locus_tag="PXB38_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL5353180.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10803..11444)
                     /gene="ccmA"
                     /locus_tag="PXB38_000834"
     CDS             complement(10803..11444)
                     /gene="ccmA"
                     /locus_tag="PXB38_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL5353181.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLSLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11588..12298)
                     /gene="hda"
                     /locus_tag="PXB38_000835"
     CDS             complement(11588..12298)
                     /gene="hda"
                     /locus_tag="PXB38_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL5353182.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLESLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12568..14169
                     /locus_tag="PXB38_000836"
     CDS             12568..14169
                     /locus_tag="PXB38_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5353183.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGKAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIENLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14441..15445
                     /locus_tag="PXB38_000837"
     CDS             14441..15445
                     /locus_tag="PXB38_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5353184.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15547..16440
                     /locus_tag="PXB38_000838"
     CDS             15547..16440
                     /locus_tag="PXB38_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5353185.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16451..17440
                     /gene="dppD"
                     /locus_tag="PXB38_000839"
     CDS             16451..17440
                     /gene="dppD"
                     /locus_tag="PXB38_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL5353186.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAIAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQMINGRQVKCHTPLNAQGEPIRIAV"
     gene            17568..18557
                     /locus_tag="PXB38_000840"
     CDS             17568..18557
                     /locus_tag="PXB38_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5353187.1"
                     /translation="MKENNSLPPLLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIAAEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRMACFVVEENN"
BASE COUNT         5678 a         4145 c         3944 g         5091 t
ORIGIN      
        1 atttcacaat caaaaaagga atcagactat gagccaactt gacaccttaa gcaaaatgac
       61 cgttatcgtt gctgacactg gtgatattga agcaatcaaa ctttataagc caaaagatgc
      121 aacaacaaac ccgtctttaa ttttaagtgc atcggcatta ccgcaatatg ctccattaat
      181 tgaagaagcg attaattacg caaaagcaca aagtagcgat aaagatcaac agttagttga
      241 tgctgaagat aaattagcgg taaatattgg tttagaaatc ttaaaacttg tacctggacg
      301 tatttctaca gaagttgatg ctcgtttttc ttatgatact gaaaaaacta tcgctaaagc
      361 acgtaaatta attggattat ataacgatgc aggcatcagt aatgatcgca ttttaattaa
      421 aattgcctct acttggcaag gtataaaggc agcagaacag ttagaaaaag aaggcattaa
      481 ctgtaactta acgttattat tctctcaagc tcaagctcgt gcgtgtgcag aagcaggggt
      541 ttacttaatc tctccattcg ttggtcgtat tttagactgg tacaaagctc acgaaggtaa
      601 agaatatgct ccagctgaag atccaggtgt aatttcagta accaatatat acaattacta
      661 caaacaacac ggttatgaca ctattgtaat gggtgcaagt ttccgtaatg taggagagat
      721 cattgagtta gctggttgcg accgtttaac catatcacca ccgttattaa aagagctaca
      781 agagagcgat gaaaaattag tttgcaagct agattacaaa ggtgaaatca agcctcgtcc
      841 agaaaaaatg acagaagcag aattctactg ggagcataac caagagccaa tggcagtaga
      901 aaaattagct gaaggcattc gtaaatttgc gattgaccaa gagaagttag aagcaatgct
      961 tgctgaaaaa cttcaataga caacgcataa aaaaccggca ttaacgataa ttaatgccgg
     1021 ttttacattt ctataaatga ttatttaaac tcataacgtc taatcgtttt tagatcgcta
     1081 tcttcatttt taatttcatc ggcaagatga acacgagcac caaccgctgc atgtgcatca
     1141 tactcacgag ttagagtcac agtttcacca ttatctcgtt gaactgtaag ttcaacaaca
     1201 tcgtttgata ctgctttgct agataaaact gttgcattac ctttatcaga ataaacatct
     1261 gcagtacaag ctgctaacat aagtgaagct aatacagcta aagaaagttt tttcattaat
     1321 aatatatcct ctaggaaaaa ctaaaattaa agcagagaaa cattcaggtc tgaattagac
     1381 cctacgattc tcacacgttt gccaggcaca aaaccgtctt ctttcttttg aacgaccacg
     1441 atttctttac catcatcttt gcgaataacc atttccaatg aagaaacttg actcgctttt
     1501 tgttctactt gattaccaat taccgcaccg gcaactgccc ccactgcggt tgcaatcgct
     1561 tgccctgtac caccgccaat cgcattaccg gcaacgccac ctaatacacc accgccgaca
     1621 gtaccgatca caccttcact gcgtgcttga attttcacat cacgcactga aacaatagtg
     1681 ccataagcga tagaacgagc ttcttttgcc tgctcaccgg aataaacgct tccgctaaac
     1741 acgtctgtat ttgcacagcc aactaaagca aaacttgaca ttaatgcgac agctaaagct
     1801 aattttttca ttttgtttgt tctccgaaac gttaattttc tgacataatt acacttttta
     1861 tatcataagg gtggagcttt agacaataag gattacaaaa agttacattt ctcaagctga
     1921 tcgcaatgct tggatttggc aatctctccc cttctacctg aggttggctg atttttaatt
     1981 taatctcaga atcatcagca agtctaaagt gcgataatgc ccttgacacc cattgttccg
     2041 aactttcgtt gtctaacatc ggaaaaacca gctcaatatg ttcccagcct tcttctaaat
     2101 aaaccttatt tttcggaaaa ggcaactcga caatctttac aaattgtccg caaaattcaa
     2161 ccgcttgtat taatgcaaac agccctatcg gtctgccgtt tacctcgctc tctttaagta
     2221 aggttgcccc atcaagcaaa aggatcttcc actgttctgc ggtttcggtt tggttcattc
     2281 ttaccgcaag atgatcgatt tcatacgctg ctaaatcaat gccggcgatt tcagcaattt
     2341 gtcggatttt ctgttcaaat tgcgataaat cgccaaaaca agcggtcatt ttctcgaaaa
     2401 attttgcatt ttctgctata attttgtcca tttttttgta aatagaattt aaataggtta
     2461 aacagtgaat attcaacaaa ttttatcaga taaaattaaa caggcaatgg tagcaagcgg
     2521 tgcagacagc aatgtcgagc ctttagtccg ccaatcgggc aagccggaat ttggcgatta
     2581 ccaagccaat ggtgcgatgg gtgcagcgaa aaaattgggg atgaatccac gtgaatttgc
     2641 ccaaaaaatc ttagagaatg ccgatttgaa cggtattgcc gataaattag aaattgccgg
     2701 tccgggcttt atcaacattt tcttaaaccc agaatggctg gcggagaaca ctaacagttc
     2761 attgcaagcg gtcaattttg gcataaaaac tgcaaatccg cagacgattg tgatcgacta
     2821 ctcctcgcca aacgtagcaa aagaaatgca cgtcgggcat ttgcgttcca ccattattgg
     2881 cgatgcggta gttcgtaccc ttgcgttttt aggcaataat gtgattcgtg ccaaccacgt
     2941 tggcgactgg ggtactcaat tcggtatgct gatcgcttac cttgaaaaaa tggaaaatga
     3001 gcacgtcagc gaaatggagc taagcgattt agaagccttc tatcgtgcgg caaaagagca
     3061 ttatgattca gacgaagcat tcgccgaaaa agcccgtaac tatgtggtga aattacaaag
     3121 cagcgataaa tattgcttaa caatgtggaa aaaattggtc gatattacaa tgcaccacaa
     3181 tcaagagaac tacaatcgct taaatgttac gctcaccgaa aaagatgtaa tgggcgaaag
     3241 cctctacaat ccaatgctgc ctgaaattgt ggcggattta aaagccaaag gcttagcggt
     3301 ggaagatgac ggtgctttag tggttttcct cgatgaattt aaaaataaag atggcgaccc
     3361 aatgggcgta atcgtgcaga aaaaagatgg cggtttctta tataccacta ccgatattgc
     3421 ggcagcaaaa tatcgctacg agaccttaaa agctgaccga gccttagtct tttctgacag
     3481 ccgccaagct caacatatgc aacaggcatg gctcattacc cgcaaagcgg gctatgtgcc
     3541 ggacagtttc agccttgaac acccgttctt cggaatgatg ctaggcaaag acggcaaacc
     3601 gttcaaaacc cgtagcggtg gcacagtcaa actcaaagat ttattagatg aagcggtaga
     3661 gcgtgccgat aaactgattg ccgaacgttc aaccgagcta actgcggaag aaaaagccgc
     3721 cgtggttgaa gcggttgcga ttggttcggt gaaatattct gacttatcga aaaaccgcac
     3781 caccgattat gtgttcgatt gggacaatat gctgaccttt gaaggcaata ccgccccgta
     3841 tatgcagtat gcctacaccc gcattcgctc catctttgcc cgtgcgaaca ttgacgaaga
     3901 tgcattgagc ggttcaatcc aactcaatga gccaaaagag cgtgcattag cagtgaaact
     3961 attgcaattt gaagaggcat taaacggcgt ggcaaaagaa ggtatgccac atattttatg
     4021 ccaatattta tacgagcttg caggtagttt ctccagtttc tacgaggctt gcccgattct
     4081 caatgccgaa gaaacaacca aaaacagccg tttgaaactc gctgccttaa cggcgaaaac
     4141 cttgaaacaa gggttggatt tactcggtat taaaactgta gagaagatgt aatacaaact
     4201 ctctcccctt gtgggagaga gaccgcttat gagcgttcag cgaaataagc agagagaggg
     4261 tacaagcggt aatttttatt aaaattttta cacattttcc cctctccctg atttttcttc
     4321 tgaacgaaga aaaatctgtc cctctcccac aaggggagag ggcatataaa aggaaacaaa
     4381 tatgaaattt attgacgaag ccctgattcg tgtagaagca ggcgatggcg gtaatggctg
     4441 tgtgagcttc cgccgtgaaa aatttatccc gaaaggcgga cctgacggtg gtgatggtgg
     4501 cgatggtggt gatgtgtatt taattgccga tgaaaaccta aacaccctta tcgactaccg
     4561 ctttgaaaaa cgttatgctg ctgggcgtgg cgagaatggt cgcagtgccg gctgtaccgg
     4621 acatcgtggg caagatatta ccctacgagt gccggttgga acccgtgcga ttgataacga
     4681 cacccaagaa attattggcg atttaacccg ccacggaatg aaaatgctgg tggcaaaagg
     4741 tggttatcac ggtttaggta atacccgctt taaatcctca gtaaaccgag ctccacgcca
     4801 aaaaaccaac ggtacgcctg gcgaaaaacg tgatttgaaa ttagagctgt tactgcttgc
     4861 cgatgtggga atgcttggct taccaaacgc cggtaaatcc acctttatcc gcagtgtctc
     4921 tgctgccaaa ccaaaagtgg cggattaccc gttcacgacg ctggtgccaa gtttaggggt
     4981 agcccgtgtg ggggccgacc gcagttttgt ggttgccgat attccggggt taattgaagg
     5041 tgcagcagat ggtgcagggc tggggattcg tttcctaaaa cacttggaac gttgccgtat
     5101 tttgattcac ttagtcgata ttatgccgat tgatgaaagc gatccggctc ataatatttc
     5161 ggtgattgaa tccgagcttt accaatacag cgaaaaactc gccgaaaaac cgatctggtt
     5221 ggtgtttaat aaaattgaca ccatcggcga agaagaagct gctgagcgag caaaagacat
     5281 tgccgagcaa atcggctggg aaggcgatta ctacttgatt tctgccgcta ccggtcaaaa
     5341 cgtgcaagct ctcactcgtg atattatgga ctttattgaa gccaacccac gcgaagtgga
     5401 ggaagaaaat aaagcacctg aagaagtcaa attcaaatgg gaagactacc acaacgaagc
     5461 aatgcaaaat gcggtagaag aagattggga cgacgattgg agcgaagaag atgacgaagg
     5521 catagagttt ctttacgaac gccgttagtg caataataca agcggttgtt tttaaacgga
     5581 gatttgcaaa tttccggaga aaaacaaccg cttgtaggtt taaggagagt ttatgcttag
     5641 ctcaacatcg tgcgatttat tcaatattcc gttcttccaa tttgctcaga tgaagaaata
     5701 ttgccctgag gagatccctc gaattaaggc ggaatataaa actcaatggg aaatttggaa
     5761 aaagctacat caggaagttt ctcgtcagct tgggcagccg tttgctccac cacatattga
     5821 gaagtggtgc aacggttggc aagttcgagc ccattttttt gcctattaca agtatgaatt
     5881 taatcgaaat tctgcggcta ttctttccgt gattttaaat cgtcgccgtt tgcaagtgag
     5941 ccttgattgg cattgttatc gagccgatcg ctcgcaaatt aacgtgcatc aatacaatca
     6001 atggtgggaa aatttagatc gggaaaagtt tgctgatttt gagatttggc acggaagtga
     6061 gagtgaatat gatgatttta gaaccgttag tcagatgtca gagcaagcgt tcaccctaac
     6121 taacgaggaa gatttttggt gtatcggcaa aaatgtggaa aaggacgatt tggataacat
     6181 tgatgtagta gaatttatct accaaaccat tcgggcatta ttgccacttt atgagaaatg
     6241 tcatcaataa acactaaaaa gagaggcgaa catcatttgt tcgccccttt caaaatttaa
     6301 gctatcactt cttttttatt ttcaatgcgt aaacggtagc gtttatccaa catacagagt
     6361 aaaccaccga gagccataaa cagcccgcca atccaaatcc agcgaatgaa cggtttataa
     6421 tacaaacgca ctgcccaaga gttatcttct aatttttcgc caagtgcagc gtataaatct
     6481 cgggtaaagc cccagtcaat cgccgcttcg gtcattccca ttcggctcac cgtatagaaa
     6541 cgtttttcag cattaagtgt ggcttcatat ttaccgtttc gagtaatttc aagctcggca
     6601 gtgccgcctt gatagtttgc cccatcggtg attttaatac ctttaaattc aaattggtaa
     6661 tctaaaatct cagctttatc acccacattc attctgacat ctcgttcaat gctgaaattt
     6721 tggctaaatg caatgccgaa cactgtcatc gcaaccccta agtgagccag caccattccc
     6781 caatgtgaac gggacagttt gaaaatgcca cttaagaacg agtggcgatg ggttgcacgt
     6841 tggtgtagct catacaggct aagtaacaca ataaagacag acatcatcgt gcctaacacc
     6901 acactcacgg taatggtgtt acggaataag tatggcaatc cgaatccaag caatgccatt
     6961 aaaatagttg caataattac cggtttacga atagcagaaa cttggtctct acgccatttc
     7021 actaatggtc caatccctaa tacaaatgag aaaggaacca ttaaaattaa gaacatttgg
     7081 tcaaaaaatg gtgccccgat tgaaatcgtc cctaagccga tttgtttgtg aattaatggc
     7141 agtaaggtcc ctaaaaacac caccgataaa aatgccatta ataaaatatt attaatgagt
     7201 agcatcgttt ctcttgaata gcgttcatag ttatctaagc ttttaatttc cgagcctttg
     7261 aatgcataca gcagtaaaga accacctact actaacacca agtaagctaa gatgtataaa
     7321 ccacgagttg gatctgaagc aaaggcgtga actgacacca aaatgcctga acgcactaag
     7381 aaagtcccca ctaaacagag cgagaaagca agaatcgcta ataagaccgt ccacgcttta
     7441 aatgtgcctc gtttttcagt cactgctaat gaatgaatca gtgctgttcc tgcgagccac
     7501 ggcattaatg atgcattctc gacaggatcc caaaaccacc agccacccca accaagttcg
     7561 tagtatgccc accaagaacc aagcacgata ccgagcgtta aaaataccca cgctgccatt
     7621 gtccacggac gagaccatct tgcccacgca gtatctaaac gccctgtcat cagtgaggca
     7681 atcgcaaaag caaaggcaac ggagaaaccc acatagccca tataaagcaa cggtgggtgg
     7741 aagatcaagc ccacatcttg cagcattggg tttaattctt tgccatcaat cggaaaattt
     7801 gggaaagttc tatcaaacgg gttggaggta aaaatcacaa acatcaaaaa gccgatgcca
     7861 atgaccccca ttagtcctaa cactcgagca acggcatctt ccggcatttt acgggtaaag
     7921 gttgctaccc cgacagacca aagcgacaac aaccaaaccc aaagcaataa tgagccttcg
     7981 tgagcgcccc acaccgcaga taaacgatat tgcaacggta aacggctatt ggagttgttc
     8041 accacatatt gcacggtaaa atcattcacc gcaaacagat aaaacagcga accaaaagag
     8101 acagtcaatg ccaaaaacat tgcccaagtc atcgggcggg caagagcaat taaggtgcta
     8161 ttttgctttt ctgctcccca aagcggtaaa actgccaaca agatagaaat cgctagggct
     8221 aatgccaacg tataattgcc taattctgca atcatttgct ttccccttgc acattgttgg
     8281 ctttttctgc ttccgcctcg gctttcattt tgcggtcggt ttccgattca cctttcagat
     8341 cttgttcaga cacacctgat tttttatgct gttcttttaa tttatcgcct aattccggtg
     8401 gcatatagtt ttcatcgtgt tttgccagaa cttccgtagc ttttaaacgg gttagttcaa
     8461 tcaacacgcc ttgtgccaca atgccttgcc cttcacggaa taaatccggc aaaattcctt
     8521 cgtattccac ggtaatcgaa ggcccgatat cattgagatc aaatactact tttaaacttt
     8581 tatcatcacg ctttaccgta tcttccacta ccattccgcc cacacggata cgctgaccaa
     8641 cttcaggctt ttgtttcgga tcatcatttt taccgtttac aatttcagac ggcgtgtaaa
     8701 acagatcgat attttggctt aacgcataaa gtgtcaagcc tgctgcgaca gaaagcccaa
     8761 gtaatatcga aaccaccact tttaatcttg atttgcgtct tggattcatc gtaatcaccc
     8821 ttcaaaataa atgcaaaatt gcataaaaac tcaaaaataa attagtgtaa gaatagcaaa
     8881 aaaccgcaaa acattcccga tatttcaagg aagttttgcg atttctcaaa tcaaatacct
     8941 ataaagaagt atgaggctat cgttgcaaaa aataaagtta tttcgaccgc ttgtttattg
     9001 tgatgtttgc tttaattttt cttcacgcac aatctctttt tttgcttgag ccaaaatcgc
     9061 tttctgttca cggcgactaa gccaaatcag cccaatcatt gcaatgaaac tgacaccata
     9121 agagagccat acataaaagc cgtagccacc cattgcaaaa aaatcgctga ttgattcaaa
     9181 ttgaaatgtc attgttctct cctactctaa actgattttg ccagttgttt tacccaaggg
     9241 cgattacgtt cgtcctttaa taaggcaatg cgataacgcc aaatgctaaa ccaagcggta
     9301 aaaattaagc taccgaaaat cgccaatagc aacggaatta acatttccac cgccatagac
     9361 ggtttatcga atttagtgat ggtcgcccct tgatgcaagg tgttccacca ttccaccgaa
     9421 aagtgaataa tcggcaagtt aatcacgcca acaactgaca gcacagccgc cgctttggct
     9481 ccggtttgtc tgtcttggaa tgcggaataa agagccatca cgccgatata aaggaaaaat
     9541 aacactaaag cggaggttaa acgagcgtcc cacacccacc aagtccccca cattggtttg
     9601 ccccaaattg caccggttgc aagtgaaata aaagcgaata ctaagccgat aggtgccatt
     9661 gaaatcatcg ccaagttagc ttggcgaatt tgccaaacca atgccaccaa gcctgccacc
     9721 gccattgagc catatacgcc catcgaccaa attgctgccg gcacgtgaat aaagataatg
     9781 cgatagctat cgccctgttg gtaatctttc ggggcaaaag ccaagcccca aacaaaagca
     9841 gccgctaaca taatcaaact tagccaacct aaaaacggtt ggattttccc tagcaaatgg
     9901 tactgcgttt ccgattttgc ataagggtgt agccatttcc acatatattt ctccaaagta
     9961 aataattccc ctcacccgtt tacaggagag ggacgatttg agcttcgttc agaagcgaaa
    10021 atcagggaga ggggaaaaag ttgcaaattt tcataataat tcgaccgctt cccctctctc
    10081 tgaaaaacac ctctgaacga ggtgtttttc ggtctctctc cctcaagagg gagagaggaa
    10141 gttttagttc aaactaattc ttaatgcacc ggcaatcgca aacggcgaaa aagttaaagt
    10201 aaccgctaaa attgctccga taatcgccag ttgtccgcta taacccatat ttaaggtggc
    10261 ggcttctaat accgcagcgg caaaaatcag taccggcaag aataacggga ggattaataa
    10321 actcagcaac gtaccgccct tgcgtaagcc cacagtgagt gccacgccaa tcgctcctaa
    10381 gcagcttaaa atcggggtgc cgagtaataa tgtcagcact aacgcccacc aaacgtgggt
    10441 ttcaagtgaa agcaaaatgg cagcaatcgg tgaaagtaaa atcaacggta agccggtcag
    10501 cagccagtga gcaatcactt tcgctaacgc aacctgcggc aaggcaagcg gcagtaacat
    10561 taattgctcg agcgaaccgt ctaaataatc atcacggaat aaccgctcaa aggaaagcaa
    10621 tgcagaaagc aaagcagcta cccacgcaat gccgccggca attttgccta ataattcggg
    10681 gttaggtccc attaaaatcg ggaatacggt aatcaccatt aaaaaaaacc acaacggatt
    10741 taaaatctcc gagggtttac gaaaggcaat ggtgagttcc cgctgaataa tagtcaataa
    10801 aatcatactt taaattgatc taacgaaata atacgcactt tgtcgctttc agcagcctgg
    10861 tggctggtaa aaatcactaa tctgccttgc tcgcaatgct gttcaatatg agcaatcaga
    10921 tccgccacac cctttttatc aatagcggta aagggttcat ctaaaatcca aagtttggcg
    10981 ttagtgagcc acaattttgc caacgccaca cggcgttgct gaccggctga caaatgcgaa
    11041 caaggcaaat cttcacgccc gatgagcgac actttcgtca atgcgtgcca aagggcatca
    11101 tcatcttgcg gtaactgttg gattttctgg tagaaacgca aattttccca cggtgttaat
    11161 tccggtttta cccccgaata atgccctaaa taaaatagtt cagaataata gtgatcacgc
    11221 tgtttttgaa ttgcaatatc gttccacagc acctcacctt ccgcaggtaa agaaagcccg
    11281 gctaaaatac gtaacaggct ggtttttcca atgccgttat gcccttcaat ctgcacccat
    11341 tcaccacttt gcacggtaaa actgcaccct tcaaacaaac gggtttcgcc ccgttcgcag
    11401 gcaatctgat taagtttaag ctgatattgg gccgtttggt tcattatttt tcatctggtt
    11461 gaacatttta gccgaagtgt atcataagcc tttgatttaa cgtagcaaat aaattacttc
    11521 tttagaggta gcaagcggtc aaattttcaa aaagttttgc aaattttgat aagaatcaaa
    11581 ccgcttgtta cagagagagg atttccttca caaaaggaat ggttaattta cgctgggctt
    11641 ggagagacgc tttatccaac ttatccaata ttttagagag ttgctctaaa tccgttcccg
    11701 ctttttttaa cagaaaatga gcgacctcat cggacaattc cacccctttt tggtgagcat
    11761 ttaactgtaa aatttggcat ttttgttcat cggttaaatc gtttagctgg tacacttcgc
    11821 cccaagttaa gcgggaacgt aaatccggca attggatatt gagttggtgt ggtgggcaat
    11881 cggcactgat taacagcaag gttttttgcc cttcgttaaa caagccttgt tgttctcgaa
    11941 tttggttaaa caggttaaaa atagcaagtt cccattcagc atctcctgca atcgcttgaa
    12001 tatcatctag gcaaatcaca ttcagcagtt cggcattatc taacaccaac ggcgagaaat
    12061 aattggcttt agtgagcgga atataactag aagtttggtt atttaaaaga aagtggttac
    12121 ttactgcttt caacaaatga cttttaccgc agctcttacc gccccaaatg taaaaaaacg
    12181 gctgttgaac atccgtaaaa tttcgtttga gggattcaag caacacttcg ctgttttggc
    12241 tataaaaatt gtcgaaagtg tcttcatcaa tttgatgaat gggtagaggt aactgcaagg
    12301 ctttccttaa atctctaagt ttgatatttt tctaagaata gcggaaaagc aggggtttga
    12361 gaagtaaaaa tagtgagaaa atatccactc atttttctaa tgaagagatg acaagcggtt
    12421 gaatttccac ataattttgt caatctgacc gaaaacccac cgttttgtgt taaaaaaaga
    12481 ttgcagttag ctcaaaaaat tgtatattca aagctttcta cttaaaaagt agagtaaaac
    12541 aactattaca aacacaacgg agtgaatatg aaaaacatga ctaaattatc gctaataaca
    12601 ttagcgctag ccgcttcaag tagcgtcttt gctgcaccga aaacctttgt ttactgctta
    12661 gaggcttcgc cttcagcatt aagcccagtg ctatcaacag acggtgcaag ctttgatgtg
    12721 aacgccctcc cgatttataa caaattaacc gactttgaag acggtacaac taatgttatt
    12781 ccctctcttg ccgaaaaatg ggacatttcg gaagacggca aaacttacac cttccacctg
    12841 cgtaaaggcg taaaattcca cgacaataaa gaatttaaac caagccgtga gttaaatgca
    12901 gacgatgtag tgttctccat taaccgtcag tttgatccaa accatccatt ccacaaagtt
    12961 tccggcggta actacgaata ctttatcggt atggatatgc aaaatattat cgataaagtg
    13021 gaaaaagtgg acgatcacac cgttaaaatc agcttaaaag tgccaaatgc gccgttctta
    13081 gctaacttag cgatggattt caacgccgtt tactcagcgg aatatgcaga gcaatcctta
    13141 aaggccggca agcctgagcg tattgatacc aacccaatcg gcagcggccc gttccagttt
    13201 gtggattacc aaaaagatgc caccgttcgt tacaaagcct ttgaaaacta ctggcaaggc
    13261 aaagcgaaaa ttgaccgctt agtgtttgca attactccgg atgcatcggt acgtttagcc
    13321 aagttacaaa aaggcgagtg ccacgcaatg ccttacccta acccggctga tatcgaaaat
    13381 ctgaaaaaag atccaaatat tgaattaatg agccaatctg gaatgaatat cggctatttg
    13441 gcattaaatt catcgattaa accattagat aaccaaaagg tacgtcaagc attaaatcac
    13501 gctgtaaaca aacaagcgat tgtagatgcg gtatatcagg gagccggtca agtagcgaaa
    13561 aacccaattc caccaacaat gtggagctat aatgaagcgg ttcaagacta tgactacaac
    13621 cctgaaaaag ccaaagcatt gttaaaagaa gccggttttg aaaatggttt tgatactgaa
    13681 ctttgggcaa tgccggtatc acgtccatat aacccgaatg ctcgccgtat ggctgaactt
    13741 atccaagaag actggaaaaa agtgggcgtg aatgcgaaaa tcgtcagcta tgaatggggc
    13801 gaatatctca aacgcttacg ccaaggtgaa gcggcaacct caatgattgg ctggacaggc
    13861 gataacggtg acccagataa cttcctcaac accttattaa gctgctcagc ggtggaagcc
    13921 ggttcaaact acgccaaatt ctgccacaaa ccgtttgaag aagtcgtgct tggtgctgcc
    13981 caagaaagcg acaaagcaaa acgtaccgag ctttataaac aagctcaagt gatcttcaaa
    14041 gagcaagctc cttggattac gattgctcac tccaccgttt acttcccggt gcgtaaagaa
    14101 gtaaaaggtt atgtgatgag tccgttcagc ttacataact tctacaaagt agatttagcg
    14161 gataaataat ccgccaacaa gcggtagaat ttgcagattt ttttacaaat ttgaccgctt
    14221 gtcctcccct ctttgaacta cgaggggcag gggggagatt tggcagaagc gattgccgaa
    14281 gtgagaggat tgtaaaagag gaaataaatt ttctgtctta ttgattattt tcttcgttaa
    14341 ttactactgt caaatctccc ctaccccctc tttgctaaag aggggaatca gatcgagaga
    14401 tcagacaact ttgatgaaaa tccaacctaa gagattttaa atgttttcat ttattttaaa
    14461 acgtgtgcta atggtgatcc ctacctttat agcgattacg ttaattactt ttgcccttgt
    14521 gcattttatc cccggtgatc caattgagat ccgaatgggg gaacgtggat tatcgcctga
    14581 ggttcatcaa caaatgatgg aacaactcgg gctgaaccga ccgttgtttg aacaatacat
    14641 cagctacatc aaaggtgtat tgcacggtga tcttggtaac tcatttcgta acaacgaacc
    14701 ggtgctgaag gaatttttta ccctattccc agccacggtt gagttggcat tttttgccct
    14761 gctctggtcg ttgattttcg gcattattct cggtgtgatt gctgcggtga aaaaagaaag
    14821 ttggatttca cacactgtaa ccacgctttc actgaccggc tactcaatgc caattttctg
    14881 gtggggcttg attttaattc tttatttctc caccccgctc ggcttaccgg cttcaggtcg
    14941 tttaccatct gaatactgga ttgaagccga aaccggtttt atgctgattg atacttggaa
    15001 ttcggacgaa ccaggggcat ttttagcggc aattaaatct ctgattttgc cgtctatcgt
    15061 actggggaca atccctcttg cagttgtgac ccgaatgact cgctcttcaa tgttggaagt
    15121 gttgggtgaa gactatatcc gcaccgccaa agccaaaggc ttaaacacta cccgaattgt
    15181 gattgttcac gcattaagaa atgccttgat tccggtggta acggtcgttg gcttaattgt
    15241 cgggcaactg ctttcaggag ccgttttaac ggaaaacatc ttctcgtggc cgggtatcgg
    15301 caaatggatt attgatgcaa tcaacagccg tgattaccct gtactacaag gctcagtgct
    15361 gattattgct actattatta ttttagtgaa ccttacggta gatctactct atggcattgt
    15421 caatccgagg attcgacata gttagaaaaa ttccttcgat ttttcccctc tttagcaacg
    15481 agggagttac acaagcggtt caaattccgc aattttttac aagattattt ttagttggag
    15541 ttaatgatgt caggaataac ggcggtaaat ccacccgcac ccaaaacacc gttacaggag
    15601 ttttggtact atttttgtca aaatcggggg gcattaatag gacttacctt tattgcaatc
    15661 gtctttgttg cgtgcgtatt cgcaccttgg gttgcccctt ttgatccaat cgaacaaaat
    15721 cgtagtgcgt tattgctccc tcctgcttgg cttgaagggg ggaattccgc tcatctgctg
    15781 ggtactgacg atattgggcg tgatattctt tcccgtatta tttatggttc aagattgtcc
    15841 gtctttatcg gcttagtcat tgtgctactt tcttgcgtat tcggcgtgat tttaggtcta
    15901 cttgctggct actatggtgg cacactcgac atcatcatta tgcgttttgt tgatattatg
    15961 ctggcgattc caagcctgct tttaactatc ggcgtggtca ctattttagg cccttcattg
    16021 ataaatgccg ctattgcgat tgcgattgtc tccattccaa gttatgttcg cttgacccgt
    16081 gcttctgtat taagcgagaa aaaccgtgat tatgttactg cttctcgtgt tgctggtgcg
    16141 agcgtgcttc gcttaatgtt tgtggtgatt ttacctaact gtttagctcc gcttatcgtt
    16201 cagatgacga tggggatctc aaacgctatt ttagaacttg ccgccctcgg cttcttaggc
    16261 attggtgcac agccgccaac accggagctt ggcacaatgc ttgccgaatc tcgtggcttt
    16321 atgcaatcgg caaactggct ggtgaccatt ccgggtctag cgattttatc gttagtatta
    16381 gctttcaact taatgggtga cggcttgcgt gacgccctcg atccaaaact gaaacaatag
    16441 gagatctaaa atggcattat taacggttga tcaactttcc gtccattttg gtgaaactaa
    16501 aacaccattt aaagcggtgg atcgtatcag ttacgaagtc aatgaaggcg aagtattagg
    16561 cattgtgggc gaatccggtt caggaaaatc ggtaagttct ctcgctatta tgggcttaat
    16621 cgatttcccc ggcagggtta tggctgaaaa attgtatttt aacggcaatg atttattggc
    16681 attaaaacca aaagaaaaac aacagattgt aggggctgat gtctcaatga tcttccaaga
    16741 tgcaatgacc agcttaaatc cgagctatac tgtgggctat cagattatgg aagccctaaa
    16801 agtgcatcaa ggtggctcaa aagccagccg tcgtgagcga gcgattgagt tgctgacgat
    16861 ggtcggtatt cccgatcctg aatcccgttt agaagtttat ccgcaccagc tttcgggtgg
    16921 tatgagccag agggtgatga ttgcgatagc gattgcctgt cgcccgaaat tattgattgc
    16981 cgatgagccg actactgcgt tagatgtgac gattcaagct caaatcattg atttattact
    17041 tgaattacaa cgcaaagaaa atatggcgtt gattttaatc acgcacgatt tagcgttagt
    17101 tgccgaatct gcccatcgca ttatcgtgat gtatgcaggg caagtcgtgg aagagggcaa
    17161 agccgagcag atattcaaag caccactgca cccttacacc caagcattgc tcaaagcctt
    17221 accggaattt gccgaaggga aatcccgcct gcaatcacta ccgggcgtag tgccgggcaa
    17281 atatgaccgc ccacaaggtt gcttactcaa ccctcgctgc ccgtatgcaa ccgaaaaatg
    17341 ccgaaccatt gaaccggcaa tgcagatgat caacggcaga caggtgaaat gccacacgcc
    17401 actgaatgca cagggtgagc cgataaggat agctgtataa cgtcataaag agtagggacg
    17461 caatgcttcg cgtccgttac aagcggtgat ttttaaccga tttttgcaaa ataacgatag
    17521 tggacgcaaa gcattgcgtc cctacatttt ccgagaagga aaacagaatg aaagaaaata
    17581 attctctccc accactcctc aaagcagtgg acttaaaaaa atactaccca gttaaaaagg
    17641 gaatgttcgc taaaccgaaa acggtaaaag cgctggatgg tgtctctttt acccttgaac
    17701 gtggcaaaac ccttgcgatt gttggcgaat ccggctgtgg aaaatcaact ttggggcgaa
    17761 tgctcactat gattgaaagc ccaaccgaag gtgaactgtt ctacaacggg cagaatttct
    17821 tagtcaatga caaagaaacg gctcaactac gccgtaaaaa aatccaaatt gtgtttcaga
    17881 acccgtatag ctcgctcaat ccacgcaaaa aagtaggtag cattttagaa gaaccattat
    17941 tgattaacac caacttatcc gcaaaagaac gcaaagaaaa agtgttggaa atgatggcga
    18001 aagtcggctt aaaaccggaa ttttacgacc gttatccgca tatgttttcg ggcggacaac
    18061 gccagcgaat tgcgattgct cggggcttaa tgttgcagcc tgatattgtg gttgccgatg
    18121 aacccgtttc cgcattagat gtttcggttc gggcgcaagt gttgaatttg atgatggatt
    18181 tgcaagaaga aatgggcttg tcttacgttt tcatctcgca cgatttatcc gtagtggaac
    18241 atattgccgc tgaagtgatg gtgatgtatt tagggcgttg cgtagaacaa ggggatacca
    18301 aaactatctt cagcaatcca cgtcaccctt atacacaagc gttactctcc gcaacccctc
    18361 gtttgaaccc ggagcaacgc cgtgagcgga ttaaactgac tggcgaacta ccaagcccgc
    18421 ttaatccacc aaaaggctgt gcctttaacg cccgttgcag atttgcaacc gatcgttgct
    18481 atgtggagcg accagagctg aaaacctatc aagacggtac tcgcatggct tgttttgtgg
    18541 tggaggaaaa taattaggca acgctcgcta tttaaaaggt taaagttttt caactttaac
    18601 ctttattttt catacttaat gctcctcatc ttttgtagca aaatctttca ttaatttgct
    18661 gatatgctca caatggtgtt taaattgacg acaatacggg caaataatca aatgcgtttt
    18721 aacgccaatc ttctctttta aagtgagttt tcgtttcttt gagtcagaaa ttaaccttgt
    18781 tacttgtcgg caattcatct atttctctcc gttaatttcc ttgaaagaca ttgttgtaac
    18841 tgcagccttg ctcgatag
//
LOCUS       DANLUT010000028        18132 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLUT010000028 DANLUT010000000
VERSION     DANLUT010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18132
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..900)
                     /locus_tag="PXB38_000841"
     CDS             complement(<1..900)
                     /locus_tag="PXB38_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5353188.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENVQFEEVYKLYIFDKKLRLLLLDIIERLEVNIRNIMAHE
                     LGRENPLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSIEWHRKNEKE
                     IPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEINIVRNLSAHH
                     SRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVAILWFLVSQT
                     STNYHWLDKFEDLLNDFPNLPNTK"
     gene            complement(1112..3229)
                     /gene="spoT"
                     /locus_tag="PXB38_000842"
     CDS             complement(1112..3229)
                     /gene="spoT"
                     /locus_tag="PXB38_000842"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL5353189.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQSSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLVIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(3339..3620)
                     /gene="rpoZ"
                     /locus_tag="PXB38_000843"
     CDS             complement(3339..3620)
                     /gene="rpoZ"
                     /locus_tag="PXB38_000843"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL5353190.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3723..4220)
                     /locus_tag="PXB38_000844"
     CDS             complement(3723..4220)
                     /locus_tag="PXB38_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL5353191.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(4245..5267)
                     /locus_tag="PXB38_000845"
     CDS             complement(4245..5267)
                     /locus_tag="PXB38_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5353192.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(5307..6737)
                     /locus_tag="PXB38_000846"
     CDS             complement(5307..6737)
                     /locus_tag="PXB38_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL5353193.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6842..7765)
                     /locus_tag="PXB38_000847"
     CDS             complement(6842..7765)
                     /locus_tag="PXB38_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL5353194.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7882..9309)
                     /gene="miaB"
                     /locus_tag="PXB38_000848"
     CDS             complement(7882..9309)
                     /gene="miaB"
                     /locus_tag="PXB38_000848"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL5353195.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGINRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(9526..10026)
                     /gene="crr"
                     /locus_tag="PXB38_000849"
     CDS             complement(9526..10026)
                     /gene="crr"
                     /locus_tag="PXB38_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL5353196.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPVGDTIVSPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGDPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
     gene            complement(10111..11832)
                     /gene="ptsI"
                     /locus_tag="PXB38_000850"
     CDS             complement(10111..11832)
                     /gene="ptsI"
                     /locus_tag="PXB38_000850"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL5353197.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDIGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     EFYQKLN"
     gene            complement(11954..12211)
                     /gene="ptsH"
                     /locus_tag="PXB38_000851"
     CDS             complement(11954..12211)
                     /gene="ptsH"
                     /locus_tag="PXB38_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL5353198.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            12472..14046
                     /locus_tag="PXB38_000852"
     CDS             12472..14046
                     /locus_tag="PXB38_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HDL5353199.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYAKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            14043..14693
                     /gene="thiQ"
                     /locus_tag="PXB38_000853"
     CDS             14043..14693
                     /gene="thiQ"
                     /locus_tag="PXB38_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL5353200.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            15000..16418
                     /locus_tag="PXB38_000854"
     CDS             15000..16418
                     /locus_tag="PXB38_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
                     /protein_id="HDL5353201.1"
                     /translation="MNYPKIAEQTIAKLGGKENITTLAHCATRLRLTIADESKIDKEA
                     IENIEGVKGQFSTSGQYQIIFGSGTVNEVYAQMQKQMGMADMSTSEVAAAGAANQPLL
                     QRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAVGFFWEGESVVSRYPNISDLVDFIN
                     TIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALADGWNYAKTLMEGNIKY
                     WNIFGLEIEKVGYQGTVIPTIVSAWVLATLEKTFRKFVPSYLDNLVTPMMSLFIAGIL
                     AFTVIGPLGREAGSAISAGLTWLYDSLGFIGGAIFGTFYAPIVITGMHQTFIAVETQL
                     LAEVAQTGGTFIFPIAAMSNIAQGAACLGVAFAMKDAKVRGLAVPSGISALLGITEPA
                     MFGVNLRYRQAFIAAMIGSGLASAFIAFFNVKAIALGAAGFLGIPSIKPDSLAMYSVG
                     MVISFVVAFTISAIWVKKAQAK"
     gene            complement(16534..17337)
                     /gene="map"
                     /locus_tag="PXB38_000855"
     CDS             complement(16534..17337)
                     /gene="map"
                     /locus_tag="PXB38_000855"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL5353202.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(17423..18088)
                     /locus_tag="PXB38_000856"
     CDS             complement(17423..18088)
                     /locus_tag="PXB38_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL5353203.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAVAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
BASE COUNT         5213 a         3986 c         3333 g         5600 t
ORIGIN      
        1 ttttgtattc ggtaaattag ggaagtcatt taataaatct tcaaacttat ctaaccaatg
       61 gtaattagtg ctggtttgac taactaaaaa ccacagaata gctacccttc cgaaaattct
      121 ctcctttgct ttgtcatcca gcgataagtt tgaaaaatac tgctgcattt ttttaaattt
      181 cgaccaacga ggatcatcta gcttaggaat agcaatatcg ctaaattttc tgttccaaat
      241 acgagaatgg tgagcagaaa ggtttcttac aatgtttatt tcattcaacc aattctttaa
      301 cgtattctca tctacattaa atttcttagc aattttcctt tggtgttgcc catttaacaa
      361 tgagtaaaac ttagataatg caccaaaatc ccaggtttca gtaattaccc aaaaagggat
      421 ttccttctca ttttttctat gccattcaat agaatcatct ttactacgct taattttatt
      481 agctgtagtt tctagccaat ttgcataagc ataattagat ttccattgaa attttaagaa
      541 cttttgatta atcagagaat aatcttcata agccaaagga ttttcacgcc ccaattcatg
      601 agccataata ttacgaatat taacttctaa acgttcaata atatccaata ataaaagcct
      661 tagtttttta tcaaaaatat atagcttata aacttcttca aattgtacat tttcgagaaa
      721 attttcgcta agcccaccat cttgattagg ctttctagat atatgccaaa atccagataa
      781 acgataatac cctacctgag ataatttttt ctctgcatag cttttatcat ttatgagcat
      841 tcctctagat atgagtagtt ctactaattc gtgatactct ttatgtggtt ttgtaggcat
      901 aaaattgaag gcattttaag aaaggcaagg acgtagcttg acactctaag tcgattacat
      961 ttagtaaacc tcagggacag gggctacgcc acgattgcaa gggattatac attttagctg
     1021 attaaagtca aaaggtttca tcaattaata atagcaatac tgtactttta aggactataa
     1081 ttgcaaaaaa ctgataaaat tttaccgctt gttactgctt acgggccgct tttacaacac
     1141 cttttacact taatagctta cggagaatca gctcagaatg ctctttattt tccacagaaa
     1201 tttgtactct cacttgatag atatttcctt ctcttgcctc gctattaatg ctgccaatgt
     1261 tgctatttaa tttggcaagc gttgatgtga tccccgcgag tacccctggt tcattgataa
     1321 tatccagtac gatttccgtt tcaaattgaa tcgctttttc tttggcaatt tcccattcca
     1381 caggtaaata attactcggc tctgttgcgt aatctttcac attaccacaa caagcattgt
     1441 ggattaccaa tcctttacct gaactgacgt gagcaataat ttcatcaccc ggtataggta
     1501 agcaacagtt tgcaaaactg ataaggcggt tctcaatccc ttcaatttta agcggttgat
     1561 tattttctgg attaccatca gtatcaatta atagtggctc ccctaataag cgttgagcga
     1621 taacattact catttggtta cctagaccaa tttcagccag tagctcatca aagcttgata
     1681 aacgtagctc gtctaatacg gattgaatag tttctgaaca caattcatca agtgagcgta
     1741 aattcattgc ccgaactagc tgtctacgcc caagtgcaat cgcctcatcg tgctgctgat
     1801 ttttaagcga ttgacgaatt ttagccctcg ccttaccact tactacaaaa tttaaccacg
     1861 atgcatttgg gcgcttacct tgctcggtaa taatttccac cgtctgtcct gttcgtagcg
     1921 gttctgaaag tggatacgga ttgcgatcaa ccatcgcacc tacacaacga tccccaatgc
     1981 ctgaatgcac cgcataggca aagtcaatag cggtagcatt cgccggcaat tcaacaatac
     2041 gccctttcgg ggtaaagacg aaaatatcgt cagagaacag atccgattta acgctatcaa
     2101 taaattctgc tgtattgccg gcactgcttt gcaattcaac aatactttgt agccattgct
     2161 gggctttgag ttgaacggtc gtgttatggt gcgactcgcc ctctttgtaa cgccagtgag
     2221 ctgttacccc catatccgcc attttgtcca tatcttcggt gcgaatctgt acctccaccg
     2281 gtacaccgtg cgggccaatc atcgaagtgt gtaaagattg atagccattc ggttttggca
     2341 cggcaatata atctttcacc cgtttcggac gaggcttata cagtgcgtgc atctgcccta
     2401 atacacggta acaattatct acattatcaa ccactactcg gaaagcataa atatctaaaa
     2461 tcgaatgaaa atgttgatct ttctggcgca ttttttggta aatggaatag agatgttttt
     2521 cacgcccata cacacgggct tcaatttgca cctcttctaa ccgaccacga atatcatcgg
     2581 caatgcgttg aattagctct ttacgatgtc ctctggcact ggcaatagcc attttcagta
     2641 cccgataacg ttgcgggtgc attgcctcga agcctaaatc ttccaactcg tttttaatat
     2701 gctctattcc caagcgatgt gccaacgggc tataaatctc taaggtttct ttcgctatac
     2761 ggcggcgttt atccggacgc aaagcaccaa gcgtacgcat attatgggtt cggtcggcaa
     2821 gtttaattaa cacaacccga atgtctttgg tcattgccaa aatcatttta cggaagtttg
     2881 ccacttctgc ctcttggcgg gtgcggaatt ttaatttatc cagcttagaa acgccttgta
     2941 caatatctgc tacgctctgt ccaaattccg ccgccagttc ttcttcggtg taaggtgtat
     3001 cttcaatcac atcgtgcaac aaagccgcaa tcaccgcttc ttgatcgagc ttcatttccg
     3061 caataatcga cgccactgct accgggtgag taatataagg ctcaccgcta gagcgtgttt
     3121 gcccctcgtg agcatcacgg gctatcacat aagcacgttt tacacgctca atctgctcgg
     3181 gtggcaaata gccttgaata attcgatcta aaggttcaaa aagatacacg ttatacctca
     3241 acaacagaaa taaaaatgga caacgaattt gcaaattttg aggaaaatcc taccgcttgc
     3301 agactcaatt gtccattctc tatttacgaa aaataaaatt acgcttcgtt gctcatttca
     3361 gttaaaaatg aaatcgcctc ttgctccgcc gcttcttgct taatagagtc gtgattttcc
     3421 agctgatcca taatgtcagt tgtaattaag ccttcttcaa tttcacgtaa tgcaatcacg
     3481 gtcggcttat cgttttcttc aggcacaagt ggctcacggg tgtgaagttg taattgtctt
     3541 gcacgacgtg cagcaattaa gattaaatca aaacggttgc caattttctc cgctgcttct
     3601 tgtacggtta cacgagccat aaatttactc caaagattta ttcggtttta ttcataaaaa
     3661 gattgcgaat tatacagaaa ttccgccaat tccgcaatga aagcgggcta aattcacaaa
     3721 atttatttgg tattcagtaa aatcgccaat aattcagcct caacctcttt gccgaatttt
     3781 cccattctaa aatcggcttt tagttgctcg aattgctcag ggttcgctgc cattttatct
     3841 tttaaaaatt gcggaaattc agataacact aattctgttt tgccattacg aatatcaaaa
     3901 atagttggaa ttttttgcgc agaaatgacc gcttgttgct gttcatcgct gtcaaaatgt
     3961 ttgcgttcct gattatcttt gcgagccaca tatttcacct taatgttagg attgagcttt
     4021 gccattcgct ggaaataagc cacaatttcc acacaatcgg ggcaatatgg ctctgccatt
     4081 accagccagt ccccttgcac gccaacagct tgcagttttt cttccgtatc tgtggaaagc
     4141 ttgacctcca catacacttc taattgattt tcacgatctt catcgctgtt aaattctaaa
     4201 tattcgtaaa aatgtgccat aattttgtct tttcctatct catcttaaat ggatttacgc
     4261 cataaaattt cacaatcaac tttaacgtca tctattttct gttgcgctaa cttttgctga
     4321 attaattcaa aggtacgttc ggcaatttgt tggtggtctt gcttaattga atgaatatga
     4381 aaaggtagtg cattcagtaa atggtgatca tcaaaggttg ctaaatgcag ttcttgagtc
     4441 aataatttat ccatttgttg gtgttcagtc agatagcgca ttactccctc aagtagggta
     4501 aaagaggctg tgaataccgc ttctgggagc ctgccaagtt tttcaactat ctgagcgaac
     4561 atttgatagc ccgattccgg ctgatagtct tgatgcagaa cccaattttc atcaagtgcc
     4621 aaatgtgact gctccaaacc ttcacggaag ccttttaaac gattttgact tggcgagagt
     4681 gaaagttgtc cacctaagta aaaaaactct tttaagtgat aagcccgtac aatattttcc
     4741 accaacatac tgatactttg tgtatcatta ctggtgatag aagggatatt caacccagaa
     4801 atatagcggt ctagctgtaa cattggggta tattgtgccg cattttgata ataagtcggc
     4861 tcattatgtg tcggagcagt aatcagtaaa tctacctgtc tgtctaataa acgctctatc
     4921 gctttcttct caccttcaaa ggtatcatcc gagcaagcga tcactagctg taacccgttt
     4981 tcacggcata atttctctaa ggttcttgag gtcagagcaa agccataatt cgttaaatcg
     5041 ggaatgacta aaccgatcac attcgtgcgt tgagcctgta atgattttgc atatacatta
     5101 gcacgataac cgtgtttttt agcgatctct ttcacttttt ggcaggtttc ggatttgatt
     5161 ctaaaatcat tgccccgccc atttaaaatc atactgactg ttgttttaga tacgccgctg
     5221 agttccgcaa tatcactgag cgttaggcgt tttttagtca cacttatctc cttttagcat
     5281 aaaaatgggc attactgccc attgctttat tctacgctaa ttggcaatac ttttgctact
     5341 ttcacttgaa tcggacgaga gctttttacg acattttcac gcttagcgat aaaaaagcgt
     5401 gaagtcagca ctttttcccc gccgtttacg aaaatttcca ccacagaacg gtcaaagaaa
     5461 atctcgattg tctctaattg ttcaattttg caatgacgaa ccgagccaaa tttttccatc
     5521 aattctgttt gttcggtttg gctacgatct aagctcaaca ccccattttc aaaacgtaag
     5581 ctgagctttt gcccctgttc attgctgaaa aaatccaaca caagcggttg attttccaca
     5641 gaaatttgca agtaggcagt atccaaattc tcgattgcaa aattttctga catttcgacc
     5701 gcttgtaatt cgcctacatt cacgattggg ttttgtatca ctttgccgtt ttgcagggaa
     5761 agtttacgag gcaatgtcag cattgaatgc cactgatatt tatcagttgg gtaagtgaga
     5821 tcaggcaagc cgacccagcc aaacaaaatg cgatcggaat tttccaccgt ttgcggtgcg
     5881 taaaagtcaa agccgtagtc cagctcttca atatgctctg cccgtaatct gttgccgttt
     5941 agctcgccaa gtgcgtaagt ggcgtggtag ttattttgga attgatggct ttcacgcagt
     6001 ttgccttgtg gcgaccacac aaacagatct ttaccaccaa gtgagaacag atccggacac
     6061 tcccacataa acacattgct gttatcaaaa ttgtggactt ccagttctgc gattaaacgg
     6121 ggtgtggcat ttaaatcgtc catttcataa attaacgccg tgccggtcaa gttttcacgc
     6181 tgagccccca acacaaaacg aattttgccc tctgcggtaa ggtaaggttt cgggtcacgc
     6241 acgtgttcgg tgtagcctgc cggtgcttgg tcgataatgc aacgcttttc caataatttg
     6301 cccgatttat caaaaatcgc gatattttgg tgaggaatgc gggcattatc tgatgggcgg
     6361 cgtgtattgc cggtgtaaaa agcgacaatc ttatcttgcc ataaaatcgc cccacctgaa
     6421 taacagccgt gggattcaaa cagctcatcg ggaatcagca aatccccttt actgaacgtt
     6481 tgaaaatcgg tagtgatgaa atgctgccaa tgtttcattc catgtaatgc cccataagga
     6541 aaccattggg cgaaaatatg gtatttttca ccatcgaaaa tcaagccgtt tgggtcatta
     6601 aataagcctg tttcgggagc gagatgatag gttgggtaaa aatcgggatc agataaaacg
     6661 gtttggcgaa gagcgtttaa ttcgccctcg ctttgtgcgt gcaggctttt gtatttgccg
     6721 ttgttgaaaa tgtgcataga gtgttcctgt catttcagaa attacgatgg tgcaagcgtc
     6781 cacgcttgta cccttttgta aaaaatgagg cacaagcgtg gacacttgcg ccatcattac
     6841 attattccgc caaaaatgcg tctaactccg ctttattcgg taatgccgac atcgcccctt
     6901 ttgctgtggt ggctaacgca ccggaagcat ttgctttgcg gatcacttca actaacacag
     6961 tttcatcgtg ccaattcggc gtttgagcaa gaccggctaa taatccgctg acaaaggcat
     7021 ctccggcacc ggtggtatcc acaggtttca aggctttgcc ggcaacgact tggctttttc
     7081 cgttgaaatg gtagattgca ccgtctttgc caagggtgat aataatcaat ttctccggat
     7141 actgagcggt aatagcttgt gtggcttgtt ccaaagtttc tgtctcggtt aataaggtca
     7201 gctcttcttc ggaaaatttg agaatatccg ccatcgccac cacagaattt accactgttt
     7261 tcatttcatc aaggctcttc cagagcgatt cacgcaagtt tggatcaaac gaaacatagc
     7321 cacccgcctt tttcactcgg cgaatccctt caatggtagt ggaacgggat gggtcgttaa
     7381 tcaaggcaat agaacagcag tgtaagaaat caccttggtt aaattcaggt aaatcgccga
     7441 tttctaaaaa ttggtcggca ctcggattta ccataaaagt aaaactacgc tcaccgttat
     7501 ctaagccaac aatcacggtg gaagtgcggt gctgagcgtc taaaatcatc tgtttggtgc
     7561 aaacattttc tgcctgtaac acttctcgca taaatttacc cagagggtcg ttacccacac
     7621 gcccgataaa tcctgcctca acccctaaac gagaaacgcc tactgcaaca ttcgccggag
     7681 caccaccggc acattttaaa tagtgatgtt cgccgtcggg aattaaatcc accaccgcat
     7741 cgcctgttac ccaaatctta ctcatctcat acacctttaa ttagtcacaa aacaccaaac
     7801 taaaacgatt tagcatttat tcgattatat actaaaagac cgcttgtaca tacctacaag
     7861 cggtcatttt ttctttaatt tttacagatt aaccacgtat ttgcctacac ctaaatcatc
     7921 ttctttacga gtgcgggcaa tcacgctttc tgccgattcc accacacgta atcccatttg
     7981 gtcttcggta cgaatcactt cgccacggag tgagttggta taaacatcgg tgattttcac
     8041 atcgacaaat ttgccaatca tatccggtgt gccaacaaag tttactacac ggttagtttc
     8101 ggttctgccg gttaattcca tcaagtcttt cttagacggg ccttcaacca aaatgcgttg
     8161 ttctgtaccg agcattgcac ggctaaattg cattgcttgg tggttgatgc gttgttgtaa
     8221 acgggataat cgctcttttt tctcatcatc ggagacatta tcaggcagat ctgccgctgg
     8281 tgtacccggt cgagccgagt agataaagct aaagctcata tcaaagttca cttgctcgat
     8341 cactttcatt gtttgctcga aatcctctgc ggtttcgccc gggaagccta caataaagtc
     8401 cgaactaatt tgaatctcag gtcgaacagc acgcaattta cggataatcg ctttgtattc
     8461 caacgctgtg tggttacgct tcatcattgt taatacacgg tctgaaccac tttgaatcgg
     8521 taaatgtaag aaactgacca attcaggtgt atcacgataa acttcgataa tatcatcggt
     8581 aaattcaatc gggtggctgg tggtgtaacg taagcggtta ataccgtcaa tcgctgccac
     8641 taagcgtaat aattcggcaa aggtacaaat gccgccatca aaagtttcac cacggtaagc
     8701 atttacgttt tgaccgagta aattaacctc acgcacacct tgtgccgcaa gttgggcgat
     8761 ttcaaataat acgtcatcca ccgggcggga aacctcttcg ccacgagtgt aaggcacaac
     8821 gcagaacgaa caatatttat tgcagccttc cataattgaa acgaatgctg tagggccttc
     8881 ggcttttggc tccggcaagc ggtcaaattt ttcaatttcc gggaaagaaa tatcgacaat
     8941 cgagctttta ccgccacgga tttggttgat catttcaggc aaacggtgca aagtttgtgg
     9001 cccgaaaaca atatctacat aaggggcacg atcacggata tgctcccctt cttgtgaagc
     9061 cacacaaccg ccaacaccga taatcaggtt cggtttatct tttttccagt ttttccaacg
     9121 cccgagttgc gagaatactt tttcttgtgc tttttcacgg atagaacaag tgtttagcaa
     9181 cagtacatcc gcatcttctg gattttcggt caattcaaaa ccgtgagtgg agtttaggag
     9241 atccgccatt tttgatgagt cgtactcatt catttgacag ccccaagtgg taatatgtaa
     9301 tttagccata acgtttaaaa ataataaata attcaataaa ttagaaaaga aaagcgtaaa
     9361 gcaatttatt atttttgact taaaataaac cctttacgca aaatttatgg cgttatttta
     9421 ccttgttgcc tattttttat ctataaataa tcgccattta tctgatttta cttaaaaaca
     9481 aaaagccacg atcttctatc gtggcttcaa gataagtatg cggtattact tggttaaggt
     9541 taaaaccacg ctttcaccgg caacaacttg accatttaat ttagataagt tgctgatttc
     9601 atccatattt gaaatcacga ttggcgttaa tactgatttg gctttacctt caagtagagc
     9661 taaatcaaat ttgatgattg gatcgcctac ttttaccgtt tgaccttcct gagcaagacg
     9721 tgtaaaacct tcgcctttta attccaccgt atcaatacca aagtgaacaa ataattctac
     9781 accttcttca gattcaattg agaaagcatg gtttgtttca aaaatcttac caatagttcc
     9841 atttaccggc gaaacaatcg tatcgccaac cgggcgaatt gccacaccat caccaacgat
     9901 tttctcagag aaaactacat caggcacatc ttcaatattt acgatttcac ctgttaatgg
     9961 cgcatagatt ttgatttctt gactctcttt ttgttttgag ccgaataatt tatcaaataa
    10021 acccatctta aaatctccct tagatattag atacaaaatt ctcttacatt ttatacgaga
    10081 attttgtatt tgtatgctaa ataattaaaa ttagtttaat ttctgataaa actcatccac
    10141 taagcgttca atatctgcag cagttggttg agcaagcgct tcatcagcta atgctttagc
    10201 atcggcaaaa ttaattgagc gaatgagttt tttaacgtgt ggcacagaga taccactcat
    10261 actaaattca tctaatccca taccgagcaa caacgcagtt gcacgcacgt caccggctaa
    10321 ttcaccacac atacctgtcc atttgccttc agcgtgtgaa gcatcaataa cttgcttgat
    10381 taagtttaag actgatgggc ttaatgggtt atataaatga gcaataattt cattaccacg
    10441 gtcaaccgct aaagtatatt gagttaagtc attagtgccg atactaaaga agtccgcttc
    10501 ttttgcaaga tgacgtgcat ttaccgctgc tgatggggtt tccaccataa tacctagttt
    10561 taagttctca tcaaaagcgt gaccttctgc acgtaattga tcttttaatt ccgcaacgat
    10621 ggattttaat aaacggattt cttccaccga aataatcatc gggaacatta ccgctaaatt
    10681 accgaacgca gaagcacgca atacagctcg taactgggta tctaaaattt cacggcgggt
    10741 aaaaccgata cgcacagcgc gccaacctaa gaacgggttc atctctttcg gtaaatcaag
    10801 gtatggtaac tctttatcac cgccgatatc cattgtacgc agaatgacca tttgaccatt
    10861 cattgcttca acaatctctt tgtaggcttg aaattgctct tcttctcccg gtaattgagt
    10921 acgatccata aacaaaaact cagtacggta taaaccaacc gcttcaccac cgttgcgtaa
    10981 tacaccttcc acatcacgga tagtaccgat attccctgcc acatcaactt tatggccatc
    11041 taatgtttga gcaggcaact cttttaattt ggctaattct tctttttccg catttaattt
    11101 ctcttgtaat gctttgaaat tagcgatttt ttcttccgat ggatttaaat gtacttcatt
    11161 gttcactgca tctaaaatca gaaaatcacc agttttaact aaggaagtaa cattgttagt
    11221 accaacaatg gcaggaagct ctagggaacg agccataata gaagtgtgag aagtacgacc
    11281 accgatatcg gtaataaagc ctaatacttt atctaaattt aattgagctg tttcggaagg
    11341 ggttaagtca taagcgacta aaataacttc atcttgaata tcaccaagat ctacgatatt
    11401 catatttaaa atattgcgta ccaagcgatt accaatatca cgaatatcac ctgcacgttc
    11461 ttttaaatat tcatcgtcaa tttccgcaag cattgaagcc tgcatctcaa tcactttact
    11521 tgctgcaaca tccgcagtca caagattatc agtaaggtaa ctcaaaattt cttcttcaag
    11581 ctcttcatct tctaagatca tcaagtggcc ttcgaaaatc gcctcttttt cctcacctaa
    11641 tgtacggcga gctttttctt taatcgcggt taattgagca gctgcttttt cgcggcctgt
    11701 aaagaatttt gctttttctg cctcaacttc gctttcagta attttgcgag tattcagtac
    11761 aatcggctct tcttttaaaa ccaatgcttt tccaaatact gcaccagggg aagctgcgat
    11821 acctgtaatc ataattgtgt ccttaattta agatgatgta aaaatcatct ggatgttaca
    11881 tagcaaaaca ctttattgta gcttattaag ctacaataaa gtgacataaa tcttaaatcc
    11941 gagaatagaa aaattattct aaagtaggaa tcaaatcaac taagaaatca actgcttttt
    12001 gctcatcttc gccgtccgca gaaattgtaa ttgttgtgcc ttgagtcaaa cctaatgttt
    12061 gtaatttgaa taagcttttt gcacttgcac ttttaccacc tgaagtcaca gtgatatcag
    12121 aagcaaaacc tttagctgct tttacaaatt cagccgctgg gcgagtgtgt aaaccatttg
    12181 gagcggtaat aacaacatct tttgagtaca taaaatcttc ctcttaaatt tgaaagttaa
    12241 aaaaatttgt tttaatccat ttattttgcg cacgcaactt tactacaaat tcaaattaaa
    12301 aacacgctaa aaagcgcaaa aactcgtcgt atcaccctgc taaatagggt gttttttaag
    12361 ctaacttaaa aatcatttgt cgaatatcaa gattctagca cacacttaag cggaaatgtt
    12421 acaataattt cgctaccact tctttcactt atattctaaa tttggagcaa tatgcttagc
    12481 acattaacca aaacaaccgc atggtttatc tactttagta ttattgctct ctatgttttt
    12541 agtctatggg cgttaatgga ctatcaccaa aatgatacct tatttgtttt ttccgatata
    12601 acggccacgg tcgcttatag cctacttcaa gccagcctct ctgcggtaat ttcactattt
    12661 ttaggcagcc tactggcaag atctttcttt tatttggact ttaaaggaaa aaatttactc
    12721 tataaaacca tttcgtttat ctgggcatta ccctcactag taattatttt tgcggtaatt
    12781 ggcgtatttg gtaactcagg ctggctagcc aaacttttcc aacaactcgg ttggaattgg
    12841 caatttaatt tatacggctt gcacggcatc attttggctc actgcctgtt taacattccg
    12901 tttgtgatga aatattatac cggagggctt caattgactc caagcagtcg ctttcagctt
    12961 gcggctcaat taaacctaac aggttggaat tatatccaaa ttgtggaact accgataatc
    13021 aaaactttgc tgccttatat gtttatgact gtttttctgg tctgctttac cagttttcca
    13081 atcgtattaa tgttaggcgg tagcccaaaa tacagcacgc ttgaagttgc catttatcaa
    13141 gcggtcactt ttgaatttga ttttgcaaaa gccctcatct taattggggt acaatttgta
    13201 gtgggcattg gcttacaatt agtaatgaat tatatctcga cttctgcact caaaaagcta
    13261 aaacagcaac ctaaccgagt agaaatttgg aaaccaaagc ctaccggact ggctaaactc
    13321 ggcttacaag cggttatttt tttgcaaagt tttgcaataa ttctaccgct tgtcagcgtc
    13381 atttgggcag gactaagcgt gtcaaaactc agtgagcgtt tgctcaaccc tactttatgg
    13441 caagctactc agtattcttt atacttaagt ttaattgctt ctatattcgt aatcacaatc
    13501 agctatttga ttgcacttga agctcgccaa ttactctatg caaaagccaa gctcagatat
    13561 agcattctca ccgcaatcac cctattcccc ttacttctgc cgatcttttt attatcggtt
    13621 ggtttgttta ttttattaat gaatagtgaa ctctcaagcg aggcattact gctactggtc
    13681 gggatatgca acggcttaac attactgcca tttatttacc caatgctttt ctccgcaatg
    13741 tggaatagcc tcacctcgca cgacaaatta gcacaaggac ttgggctaaa ggggcttcgc
    13801 cgttggtgga ttgtggaaaa aaatcaacta attcgaccgc ttgttaccgt atttgcgtta
    13861 gcaatgtcat cgagcttagg cagtttcacc gtcattgctt ttttcggcaa cgctgatttc
    13921 agctcactcc cttatttact ctaccaacaa cttggtagct atagaaccga agatgctgcc
    13981 gttaccgcac tcattctgat gttatttgcg ttactaccat tcttattcag caaggataaa
    14041 ctatgatcga actggatctc catttcactt acgaacaaat gaatatgcac tttcagcttt
    14101 ctgtcaaaaa aggcgaacgt attgcagtgg ttggcgaaag tggcgcaggc aaaagcacat
    14161 tacttaatct aattgccggt tttgaaaagg cagaaagtca gcaaagccag ctgtggctaa
    14221 atcagaaaaa tcatcttgat accgaagttg cacaacgtcc tgtttcaatg ctattccaag
    14281 ataacaatat tttcccgcac ttaacggtag aacaaaacat cggcttagct ttagtaccaa
    14341 gtttgtcgct caatccgaaa caaaaagcac aggttaaaca aattgccaca caaatgggga
    14401 ttgaaacctt ccttcagcgt caagccgatc agctatcggg cggacaaaaa cagcgagtgg
    14461 cattagctcg tactttgttg cgggataagc cgattttatt attggacgaa cccttctccg
    14521 ccctcgaccc gcaacgccga gccgaattac agcaaatcgt gtttgacatt tgccaaagca
    14581 gaaatctaac cctgttaatg gtaactcacc aactatccga aagcctattt ctatttaatc
    14641 gggtgataac ggtagcagat ggggagattg tttctgatct ctcccctctt tagcaaagca
    14701 gatctgctag gttctaaatg tagggacgcc acgctggcgt acgcaacgat gtcaattcca
    14761 acaatctaac ggtgaatgat gttccgcacg gatactagcg ttattcattt ttttcagaac
    14821 tcgcccccta ctttagcaaa gaggggaact gtaactaata ttacctccct attccgctat
    14881 tctcttcccc aaaatgtgat ctacttcaca aatttggaaa tattttaaat cttctctttt
    14941 ttagctaaac cgttttagtt aaaatgcaac cgattatttt ttatgaaagg taaattcaaa
    15001 tgaactatcc aaaaattgca gaacaaacga ttgcaaaatt aggtggcaaa gaaaacatta
    15061 ccacacttgc ccactgtgca acccgtttac gcttaaccat tgctgatgaa tccaaaattg
    15121 ataaagaggc gattgaaaat attgaaggcg tgaaaggtca attctctact tccggtcaat
    15181 accaaattat ttttggatca ggcacggtaa atgaagtgta tgcccaaatg caaaaacaaa
    15241 tgggtatggc agatatgtcc acctctgaag tagcggctgc cggtgcagca aatcagccat
    15301 tactacaacg tttggtaaaa ggcttagccg atattttcgt gccgatcatt ccggctattg
    15361 tggctggcgg tttgttaatg ggtattcact caatgctaac ggcagtcggt ttcttctggg
    15421 aaggtgaatc tgttgttagc cgttatccga atatttccga tttagttgat ttcatcaaca
    15481 ctattgctaa cgcaccattt gtattcttac ctgtattact cggtttctca gctacacgca
    15541 aatttggcgg taatccattc ttaggtgcgg cacttggtat gttattggtt cacccggcac
    15601 ttgcagacgg ttggaactat gccaaaacct taatggaagg taacatcaaa tactggaata
    15661 ttttcggctt agaaattgaa aaagtgggtt atcaaggcac ggttattcca actatcgttt
    15721 cggcttgggt gttagcaacc cttgagaaaa ctttccgtaa atttgtgcca agctatttag
    15781 ataacttggt gacgccaatg atgtcattat ttatcgccgg tattttagct ttcactgtaa
    15841 tcggaccatt gggtcgtgaa gcaggttcag cgatttcagc aggcttaacg tggttatatg
    15901 acagcttagg ctttatcggt ggagcaattt tcggtacatt ctacgctcca atcgtgatta
    15961 ccggtatgca ccaaaccttt attgcggttg aaacccaatt attagctgaa gtagcacaaa
    16021 ccggcggtac atttatcttc ccgattgcag caatgtctaa cattgcacaa ggtgcagcct
    16081 gtttaggtgt agcttttgca atgaaagatg ccaaagtgcg tggtttagcc gtgccgtcag
    16141 gtatttcagc cctgttaggt atcaccgaac cggcaatgtt cggagtaaat ttacgctacc
    16201 gccaagcctt tattgcggcg atgatcggtt caggtttagc cagtgcattt atcgctttct
    16261 ttaatgtgaa agcaattgcc ttaggtgcag ccggtttctt aggtattccg tcgattaaac
    16321 ctgacagcct tgcaatgtat tctgtcggta tggtaatttc atttgtagtt gcatttacca
    16381 tttcagccat ttgggtgaaa aaagcacaag cgaaataatc aaaaatagat cacaaaaaag
    16441 ggattaagtg ttagcttaat cccttttgtt tttaaacgcc ttagcttaac aatgagtttc
    16501 gcaagcggtc atttttcgct aaaaatttgc aaattagctg ttgtgcataa ttcgagaaat
    16561 acgcccttcg gcaatctctt catcacgaat tgtcagcact tcacagccgt ctttggtaac
    16621 tacaatttga tgctcatatt gtgcggagtg gctgcggtct ttggttttca ctgtccaacc
    16681 gtcacccatt aagcggactt cttttttgcc ggcattcacc attggctcaa tcgtaaacac
    16741 cattccttct tttaacacta caccgccatc atcggtagca taatgcacta cttgtgggtc
    16801 gcaatggaat tcagtaccaa taccgtgtcc gcaatattct cgtactaccg aaaagccttc
    16861 tttttccaca tatttttgaa tcgctgtacc aatttctttt aaacgcaccc ccgctttcac
    16921 ggtgcgaatc ccgacataaa gggactctag cgtaaccgcc attaagcgtt tatcccgcac
    16981 acttggctca ccgactacat acatcatcga gttatcgcca tagtagccat ctttgataac
    17041 cgtcacatcg atgtttaaaa tatcgccttt tttcagcttt ttgtcatcac ttggaatacc
    17101 gtgacaaacg acctcattta acgaaatgca caccgatttt gggaagccgt gatagcccaa
    17161 actggctgaa gttgccccat ttgccaaaat gtattcgtga caaattttat ctaattcacc
    17221 agttgttacg ccctctttca cataaggggc gatcattact aaaacatctg aagccagttt
    17281 acaggctact cgtagttttt gaatttcttc ttcgtttctt aatggaatat tattcattac
    17341 attgctctct gctatatctg ccataaaaag taaggggatt ataccttttt tcagcacaat
    17401 ccccaaacct cagtttagat ttctacttta aatcaagttt cttcataatg aaatttaata
    17461 tcacaccata aagcggtaga aatagcagta ggctcacaaa gagtttaaac gcataatcga
    17521 ccgaaccaat agtaaaccaa tgctctgcca tatattcatc gctactttta taaaaggcga
    17581 cagcaaagaa tacaaaagta tcgattaaag taccaaaaat ggttgaacag gttggagcaa
    17641 gccaccaacg cttaccttgt cttaaactat taaatactag aacgtctaat aattgcccaa
    17701 ctaaataagc tgcaaagcta gccagtgcaa tacggaaaac aaaaaagttg aactcagtta
    17761 atgcactaaa gccttgaaat tgggtttcaa agaataaaac ggaaatcaca tagcttatga
    17821 caagtgccgg aaacatcaca acaaaaataa tttttctagc aagatctgca ccaaatacac
    17881 gcacggttaa atcggtcgct aagaaaataa atgggaatgt taacgttccc caagttgtcg
    17941 gaaagctaaa ttctgttagt ggtacttgaa cttcaaagct aatttgcact aaatagttgc
    18001 taattgcgat gataaaaata tggaaaagtg aaagtaaaat tagagaacga cgtttgttct
    18061 catccgaaaa ataagtagta aagttcatat tgtatccttt ttcgttaaat gaaaacttga
    18121 ggtaagggaa ct
//
LOCUS       DANLUT010000029        18077 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLUT010000029 DANLUT010000000
VERSION     DANLUT010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18077
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            38..1018
                     /locus_tag="PXB38_000857"
     CDS             38..1018
                     /locus_tag="PXB38_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5353204.1"
                     /translation="MLDSKNTDLILSEIPNKILFLRHDGKIGDYVVSSFVFREIKKQS
                     PQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGGKQLAKEQYDVVIDPTVT
                     LRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSEIYQDALALIGFENIETQ
                     YDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSEQKINELLSCLKQHSDKP
                     IVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRFADLLISPDTATVHIASG
                     LSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDFAAIKPEWLK"
     gene            1020..1910
                     /gene="ilvY"
                     /locus_tag="PXB38_000858"
     CDS             1020..1910
                     /gene="ilvY"
                     /locus_tag="PXB38_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL5353205.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2044..4446)
                     /gene="lon"
                     /locus_tag="PXB38_000859"
     CDS             complement(2044..4446)
                     /gene="lon"
                     /locus_tag="PXB38_000859"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL5353206.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      4650..4768
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4944..6041
                     /gene="ribD"
                     /locus_tag="PXB38_000860"
     CDS             4944..6041
                     /gene="ribD"
                     /locus_tag="PXB38_000860"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL5353207.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6223..6870
                     /gene="ribE"
                     /locus_tag="PXB38_000861"
     CDS             6223..6870
                     /gene="ribE"
                     /locus_tag="PXB38_000861"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL5353208.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETNLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            6889..8088
                     /locus_tag="PXB38_000862"
     CDS             6889..8088
                     /locus_tag="PXB38_000862"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL5353209.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8294..8758
                     /locus_tag="PXB38_000863"
     CDS             8294..8758
                     /locus_tag="PXB38_000863"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL5353210.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(8804..10312)
                     /gene="lnt"
                     /locus_tag="PXB38_000864"
     CDS             complement(8804..10312)
                     /gene="lnt"
                     /locus_tag="PXB38_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL5353211.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10371..11270)
                     /gene="corC"
                     /locus_tag="PXB38_000865"
     CDS             complement(10371..11270)
                     /gene="corC"
                     /locus_tag="PXB38_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL5353212.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11408..12016
                     /locus_tag="PXB38_000866"
     CDS             11408..12016
                     /locus_tag="PXB38_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL5353213.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12097..12480)
                     /locus_tag="PXB38_000867"
     CDS             complement(12097..12480)
                     /locus_tag="PXB38_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353214.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12510..13079)
                     /locus_tag="PXB38_000868"
     CDS             complement(12510..13079)
                     /locus_tag="PXB38_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL5353215.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEVVE"
     gene            13138..13983
                     /gene="nfo"
                     /locus_tag="PXB38_000869"
     CDS             13138..13983
                     /gene="nfo"
                     /locus_tag="PXB38_000869"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL5353216.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14111..14683
                     /locus_tag="PXB38_000870"
     CDS             14111..14683
                     /locus_tag="PXB38_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5353217.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGITKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(14750..15208)
                     /locus_tag="PXB38_000871"
     CDS             complement(14750..15208)
                     /locus_tag="PXB38_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5353218.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15382..15765)
                     /gene="grcA"
                     /locus_tag="PXB38_000872"
     CDS             complement(15382..15765)
                     /gene="grcA"
                     /locus_tag="PXB38_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL5353219.1"
                     /translation="MIKGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVV
                     AISELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVITRTFTESL"
     gene            15924..16613
                     /gene="ung"
                     /locus_tag="PXB38_000873"
     CDS             15924..16613
                     /gene="ung"
                     /locus_tag="PXB38_000873"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL5353220.1"
                     /translation="MKTWTEALGEEKQKAYFQQILHYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LPVDVSYSSTH"
     gene            16629..17549
                     /locus_tag="PXB38_000874"
     CDS             16629..17549
                     /locus_tag="PXB38_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL5353221.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGFHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTRS"
     gene            17585..18022
                     /locus_tag="PXB38_000875"
     CDS             17585..18022
                     /locus_tag="PXB38_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL5353222.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQISLFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIVRGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
BASE COUNT         5395 a         3457 c         3834 g         5391 t
ORIGIN      
        1 aacgttaaga aaagcaagat tggcgatagg taaagccatt ttagatagta aaaatactga
       61 tctgatatta tcggaaattc ccaataaaat tctatttctt cgtcacgatg gtaaaattgg
      121 tgattatgtc gttagttcct ttgtcttccg tgaaataaaa aaacagtctc cccaaacgca
      181 aataggcgtg gtttgctcac agaaaaaccg atatttattt gagaataatc cttatattga
      241 taagctctat ttggttaaga caaaaagtat tcctgattat attcgtggtg gcaaacaact
      301 tgcaaaagag cagtatgatg ttgtaatcga tccgactgtt actttacgga atcgtgatct
      361 cttattttta cgcactatat cagccaaaca ttatgtaggt tatcagaaac aaaaatatcg
      421 attatttgat ctaaatgtag aggatagaaa acagcatttt tcagagattt atcaagatgc
      481 gttagcttta atcgggtttg aaaatataga aactcagtat gatgtgccac taaatgccac
      541 aagcaaccaa tccataaagc attatttata tgaaaaccaa attagaaatt atattgcgtt
      601 aaatcttttt ggtgcaggtt cggcaagacg ttttagtgag cagaaaatta atgaactgct
      661 gagttgctta aaacagcata gtgataaacc gatagtctta cttacttttc ctgaagtaac
      721 ggcaaaattg tgttccttta ctaagaagta taaaaatata tttgtctatg agaaaaccaa
      781 aagcgttttt gattcaatag aactgattcg ttttgcggac ttattaattt cacctgatac
      841 tgcaaccgtg catattgcct caggcttgag taaaaagata attgcttttt acagtagcga
      901 tgaacagaat tttatacatt ggcatccgaa taatcaggct gaaacccata ttctccgttt
      961 tagaaaaagc gtgaatgatt tagattttgc tgcaataaaa ccggagtggc taaaataata
     1021 tggacttcca aagccttaaa cttttcctag atatagccca aagccgtagt tttattcgca
     1081 gtgcggagaa gaattatatg acggcttcca cacttacccg ccatattcag cgtatagagg
     1141 aggagctcgg gcagccgttg tttctgcgtg ataatcgaca agtgcgttta actgaagcag
     1201 gggaaaggtt tttggcgttt gctcaacaag gttgggcaga gtggcagcag ttgcaaaacc
     1261 agttgtcgcc tgctcaaggt gatttagaag gagagttgaa agtgttctgc tcggtaacgg
     1321 cttcttacag ccatttaccg ccgattttgg gaaagtttcg ccaaaaatat ccgaaagtgg
     1381 atattaaact gagtaccggt gatccggctt tggcattgga acaggttcag tcattggctg
     1441 cagatatttc ggttgcgggt aagccggaat ttctgccgaa taatattgtg tttcactata
     1501 ttgatgatat tcaactttcg attattgccc ctcgtgtggc gagccaagcc actcaatttc
     1561 tgcaacagtc gccgatagat tggaaaaata tcccctttat tttgccggtg aacggacctg
     1621 tacgaaaacg gattgaccgt tggtttaaag agcaaaaaat caaagacccg attatttatg
     1681 ctaccgtctc cggacacgaa gcgattgtgc cgatggttgc actaggcttt ggggtcgcac
     1741 tgctaccgga tattgtgatt aagcatagcc caatgaataa tcaagtttct tatgtgaatt
     1801 taccctcgcc gatcactccg tttgagctgg gaatttgcgt tcagcaaaaa cgcttgcaag
     1861 agccgatcat caacgcattt tggcaattat tgtctgataa ttcagcataa caagcggtta
     1921 gattttgcta aatttttgca aaaaatagag caaaaccgac cgcttgtaga taaaactttc
     1981 agataaaaaa taaggtgcgt gattgtgatc tgcgcacctt atgttgtttt agattattgc
     2041 actttattgc actgtggctt tagctcgcga ttttttcacc ttgatctcgg cttttgacaa
     2101 gatttcaatc cccattggcg ggttttctag tgccagagct agtacctcgt caatggtttc
     2161 tactgcgtga atgtccaacg ctgcttttgc attttccgga atttcctcta agtctttttc
     2221 attttctttc ggaataatca ccgtcgtaat accaccacga tgggctgcca gtaatttctc
     2281 ttttaagccg ccgattggca atactttgcc acgcaagctg atttcaccgg tcatcgctac
     2341 ttctttacgc acagggttac ctgttaggct ggaaattaat gcagtacaca ttgcaatccc
     2401 tgcactcgga ccatctttcg gtgttgcacc gtccggcacg tgaacgtgaa tatcccgttt
     2461 ttcgtggaag tcttcagcaa tgcctaattt ttctgcacga gagcgtacaa ccaccattgc
     2521 cgcttgaata gactctttca ttacatcgcc taatgaaccg gtgtaagaga atttgccttt
     2581 acctgcaaca gaagcggttt caatggttaa taaatcaccg ccaacttctg tccacgctaa
     2641 accggtcact tcgccaatgc ggttttggct atccattttg ccgtagtcaa aacgttttac
     2701 gcctaagtat tcttcgatat ttttctcaga aactgtaatg gattttaatt tcttatccaa
     2761 tactaaagct ttcacggctt tacggcagat tttcgcaatt tcacgctcaa ggctacgcac
     2821 gcctgcttca cgggtgtagt agcggataat acttaaaatt gcactgtctt caatggtcag
     2881 ctcaccctct tttagtccgt tattttcttg ctgtttagcc agtaaatgac cacgagcaat
     2941 gtgcattttc tcatcttcgg tatagcctga aagacgaatc acttccatac ggtcgagcaa
     3001 tgctggcgga atgttcattg agtttgaggt tgccacaaac attacatcgg ataaatcgta
     3061 atccacctct aaataatggt cgttaaaggc tttattttgc tcaggatcta acacttcaag
     3121 cagagcagaa gccgggtcgc cacgcatatc ttgagccatt ttgtcgattt catctaacaa
     3181 gaacagcgga ttacgcacgc cgactttcgc cattttcatc attaggctac ccggcattga
     3241 gccgatgtaa gtacggcgat gcccacggat ttccgcttca tcacgcacgc cacctaacgc
     3301 catacgcaca tatttacgcc ctgtggcatt ggcaatagat tgccctaatg aggttttacc
     3361 aacccccggc ggaccaacta agcacaaaat cggacctttt aatttattta gacgactttg
     3421 cactgctaag tattctacaa tccgctcttt cactcgttct aagccgtagt ggtctttatc
     3481 caaaatctct tgagcttggg ctaaatcttt tttgaccgct gattttttat gccacggcat
     3541 ttgtaaaatc cagtcaatat aaccacgcac aacggtagct tcggaagagc tttgcggcat
     3601 tgctttgagc tttttgaact ccgtattcag cttgtctttt acctcggtcg gtaattttgc
     3661 agcgtcaatt ttctctttaa gcttatctaa ctcgctttgt tcaacgtcat cgccattacc
     3721 taactctttt tgaatcgctt taatttgctc gttgaggtag taatcacgtt ggtttttttc
     3781 catttgctgt ttaacacgat tacgaatccg agtttcggtt tcaagcgtat ccatctcagt
     3841 tgccatcgca attaacaagg cttcaaaacg ggcaatcaga tttggttgct ccaataattc
     3901 ctgttttttc ttcaccggag caattaagtt agaggcaatg gtatccgcca agcggtcttc
     3961 caacgtgatt ttttgcagtt tagcaataat ttccgccgga attttcttgt tatttttaac
     4021 gtaattttca aattcggtta aagtggtttt agcaatcgct tttaactctt cgttttcgtc
     4081 atcatattcc gaatatattg gctgaattgc cgcccagaag ccgttttcat catcgtgaat
     4141 ttgctcgatt ttggcacggg tttgtccttc taccagcact ttaactgtgc cgtccggcag
     4201 gtttaacatt tgaataatgt tggcaattac acctacgcca tacatatctt ctgcattcgg
     4261 ctcttcttta tttggatctt gctgagtgac taaaaacagt tgtttattgg aatccatcgc
     4321 cgagcgtagg gcttgaattg atttttcacg tcctacaaat aacggcataa ccatataagg
     4381 aaaaaccacc acatcacgca atgggagtag tggtaattca atcgctttct tttttcttgg
     4441 tgccataaat ttgctctctc tatcaaaata taatccccca ttatgagggc gaatttggga
     4501 aaaacaaggg aaaatttgat ttatcttaaa aaaactcgaa tagtcaaaac agtagatgtt
     4561 ggcgatttaa tcaattgtta aaatcagggt aattagctta atttcccgct tgacatcaaa
     4621 tcgtaatgcg agcaaaatcc cctgcatatt ttaatcttca gggcagggtg aaattcccga
     4681 tcggcggtaa agtccgcgag ccgagcaatc ggcaggattt ggtgaaattc caaaaccgac
     4741 agtatagtct ggatgaaaga agagtcaaaa accgcaaaaa ataccgcaca agcggtcatt
     4801 ttttgtgtct tttttgcaag ccttgagtcg tgagatttca aggcttcatt gttttgcagg
     4861 cggcgtttgc aaatttttta ctaaaaacga ccgcttgtat tgcaataatc ctttcattac
     4921 gccctcaatt tatcaaaatg catatgacag atgttcaata tatggcttat gccatcaccc
     4981 ttgccgaaaa agcacggggt tggacaagcc ctaatccgct agttggctgt gtgatcgtga
     5041 aaaacggcaa cattatcgcc gaagggtatc accaaaaagc cggtagttgg cacgctgaac
     5101 gcaatgcgat tttaaactgc gaggaagatc tgacgggggc aaccgcttat gtaaccttag
     5161 agccttgttg ccaccacggg cgaaccccgc cttgttccga actgctgatt gaacgtggga
     5221 tcaaaaaagt gtttatcggc tctcgagatc cgaacccact tgtttctggc aaaggagcgg
     5281 cacagcttag agccgccggc attgaggttg tggaagactt tatgcgaacg gagtgcgatg
     5341 cgctgaaccc gattttcttc cattacattc aaaccaaacg cccttatgtg ttgctgaaat
     5401 atgggatgac ggcagatggt aaaattgcga cttatacggg gaattcgaaa tggatcaccg
     5461 gcgaggctgc ccgagctaat gtacagaaaa gccgccacga atatagtgcg attatggtcg
     5521 gggtggaaac ggtgcttgcc gatgacccaa tgctcaacag ccgaatggaa aatgctaaac
     5581 agccggtgcg gattgtatgt gacagccaac tgcgtacccc attggatagc cagctagtcc
     5641 aaactgcacg ccaatatcgc accattattg ctacgctcaa taatgatgca aaaaagcagg
     5701 cagaatatac cgcttgcggt gttgaaattt tagtgacagg cgaacgtgac aagcgggtgg
     5761 atttagccga tcttttgcaa aagctgggcg aactcgggat cgacagctta ttgattgaag
     5821 gtggttcgca actcaatttc agcgtgctgg aacaggggtt agtcaatcga gtacattgct
     5881 atattgcccc gaaactgatt ggcggcaaag cggcaaaaac cccgattggt ggcaagggga
     5941 ttggcgagtt agcacaagcg gttaaattac gtctaaaatc caccgaattg ctcggagaag
     6001 atattttgtt ggattatgaa gtggacttgc ttcgtaatta aattgaaatt tccttactct
     6061 cgcccgttta cgggagagag acagcataaa atttcgttca gaaattttat gcagagagag
     6121 gggaaaatga gtgtaatctt ccctctcccg taaacgggag aggggaatag taagataagc
     6181 agttctcaga ctaaattgga agtaaatcgg agaaaaattt aaatgttcac aggcattatc
     6241 gaagaagttg gccagatagc ccaaattaag aaacaaggcg agtttgtggt ggtaacggtt
     6301 aaagcaaaaa agattctgac cgatgtacat ttaggggata gcattgcggt aaatggcgtg
     6361 tgtttaaccg tgacttcatt tacgcaggag caatttactg ctgatgttat gtcagaaacc
     6421 ttaaaacgta catcacttgg cgaattaagt atcaacagct cggttaatct tgagcgggca
     6481 atggcggcaa acgggcgttt tggtgggcat attgtgtcag gtcatattga tggcacgggt
     6541 gtggttgcag agattacacc agcagataat tcaacttggt atcgcattaa agccgaacct
     6601 aagttaatgc gttacatcat tgaaaaaggc tcaattacta ttgatggcat tagtttaacg
     6661 gtggtggatg ttgatgcgga atctttccgg gtatcgatta ttccgcatac cattaaggaa
     6721 accaacctcg gtacgaaaaa aatcggtagt ttggtgaatt tagaaaatga cattgtcggc
     6781 aaatatatcg aacagttttt attgaaaaaa gagcctgaaa atccgcaaag taaaattact
     6841 gcggactttc ttaaaaatgc agggttttaa ccaaataaag gacaaataat gtttaagttt
     6901 tcaacggtag aagaagcaat tcaagcaatt gcacaaggga aaattatttt agtcagcgat
     6961 gatgccgacc gtgaaaatga aggggacttc atttgtgcag cggaatttgc gacaccggaa
     7021 aatatcaact ttatggcgaa atatggtaaa gggttgattt gtacgccgat ttcgacagaa
     7081 attgccaaaa aattaaattt tcacccgatg gtgctagaga acgaagataa tcatcaaacc
     7141 gcatttaccg tttctgttga ccatattcaa accggcaccg gtatttccgc ttttgagcgt
     7201 tcattaactt gcctgaaaat gcttgatgaa aatgctaagc cggaagattt tagacgtccg
     7261 gggcatgttt tcccattagt ggcaaaagac ggaggcgtat tagtgcgtaa cggtcatacc
     7321 gaagcaactg tggatttagc tcgtttggcg ggcttgaaac cggcagggct ttgctgtgaa
     7381 attatggcag aagacggcac gatgatgcag atgccggaat tacaggcatt tgcacaagca
     7441 cacaatatgc cgtttattac tattcagcag ttacaagagt atcgtagaaa acacgacagc
     7501 ttggtgaatg tggtttcggt ggtaaaaatg ccgaccaaat acggtgagtt caaagcacac
     7561 agtttcgttg aaactatttc aggcaaagaa cacgtcgctt tagttaaagg tgatattggt
     7621 gatggcgaaa atgtattatg ccgtatccat tccgaatgtt taaccggcga tgcctttggc
     7681 tcacaacgtt gcgattgtgg tcagcagttc gcagcggcaa tgaaccaagt ggagcaagag
     7741 ggcagaggcg tggtgcttta tttacgccaa gaaggacgtg gcatcggttt aattaataaa
     7801 ctgcgtgctt acgaattgca agatagagga atggacacgg ttgaagccaa cctggcatta
     7861 ggtttcaaag atgatgagcg tgaatattat atcgccgctc aaatgtttga aaaattaggc
     7921 gtaaaatcga ttcgtttgtt aaccaataat ccggcaaaaa ttgaaggact cattgagcaa
     7981 ggtttaaacg tagtggctcg tgagccgatt atggttgagc caaacgaaca cgatttggaa
     8041 taccttaaag ttaaacagca caaaatgcga catatgttta atttctaatc caatactctc
     8101 tccccttgtg ggagagagac agaaaaatac ttcgttcaga agtatttttc agagagaggg
     8161 tatatttttt agaaaaagtt tgcaatttcc cctctccctg atttttcttc tgaacgaaga
     8221 aaaatctatc cctctcccac aaggggagag ggttattgag tatcaaattt attttaaaga
     8281 aggaaaacaa acaatggcaa catttcaagg aaactacatc gcaactggtt taaaattcgg
     8341 tattgtggca actaactggc acaagatttt tatcgatcaa ctgttaaacg gtgcaaccga
     8401 taaattattg cgtcacggcg tagaagaaaa aaatatcgac accgtatggg tgccgggtgc
     8461 attagaaatc tcaattgcag cgaaaaaaat ggcacaaagc ggtcgttatg atgcgattat
     8521 ctgcttaggt gcggtcgtgc gtggagcaac cagccactat gatgtggtag tgaacgagtc
     8581 agcaaaaggc atcagctctt ctgctttaga aaccggcgtg ccgattatta acggtatttt
     8641 aacggtggaa aatttagagc aagcgattga gcgttcaggc actaaagccg gtaataaagg
     8701 cgaagagtgt gcaatggtag cgattgaaat ggcgaaccta ttaaaagcct tagcgtaatc
     8761 agcgataaaa tccccttaga cccaagagcc taaggggatt tttttatttt ctgcgtagta
     8821 acaggctggc aatgacacaa aataggctga aactgtaaat taaccagtga cctaattgtt
     8881 taaacggcgt atcgcctttg gttggcacaa tggtggcagt tagtgcatca gcagtaaatt
     8941 gcggtagttg ttcaattact tttccgttgg catcaacaat ggcggtaata ccggtattcg
     9001 cagctcgaag caatggtttg ccaagttcta acgctcgcat tcttgccatt tggaaatgtt
     9061 gccaaggccc gatggaagaa ccaaaccacg catcattggt gatagttaat aaataatctg
     9121 aattttggct tttttggttt tgttgtaact gatcaccaaa aataatttca tagcaaatcg
     9181 ccatattaaa tcggttgttt ttcgccaaga atgatggttg aacgaaactg ccttgtgaaa
     9241 gattaattgg tagaataaac acttcccgca tccaatccag caccgagcca aacggcacat
     9301 attcgccaaa cggcacaagg tgatgtttgt tgtagcgagg gttgctgtgc agggcatatt
     9361 ccctctcttt ttcgcctaat agcacgctac tgttaaacag ttcctcttgc tcattttgat
     9421 agagtgtgcc gataataatt tcacttccgt gttggcgagc taagtgatcg agcgagccaa
     9481 gcagcgggct gatttgattt tcaagtgccg gaatggcgga ttcaggcaaa ataatcagtt
     9541 cactgttacc taataggggc agaatgagct gttcgtaggt tcgtacgctg tggttgaaat
     9601 gttgcggatc ccacttcatt ttttgctcaa tattcccttg tactaaactc actacaagcg
     9661 gttgtttttc tgtatcaatt tgcacaaatt ggagaaagcg agtggcaaaa cttaagccaa
     9721 aaatgaccgc tagtaccatc aatgatggca cagttttgtt ctcttgctga ataattttca
     9781 ctagatagct acttgcaact attaccaaga aagtcaaacc ttcaacgccc aaaatcggcg
     9841 caataccagc aaaggggctg tctattaagc tatagccgaa ttgtagccac ggaaaaccgg
     9901 taaataccac gcctcgtaaa tattcggtaa aggtaaaaat cgcagccaat gcaaacggat
     9961 tattcagttt gagcctgtgt gaaactacac taaacagcag attataaata gcgagatagc
    10021 acgccaacag gaatactgct atgtagctta ctatggtagg aacaccacca aattgggtca
    10081 tactcacaga aacccagttt acaccggtgc agaagtagcc gatagaccaa gcaaaggttg
    10141 cccataatgc ggtttttctg tttgccagag tggctgacca aaccaagccg gctgcggaag
    10201 caaaggcaag aatccaaata tcaaaaggcg aataggcgaa agtgccgatt gcacccagta
    10261 tgattgcaag gagacaagcg gttaaaaaag gcggattttt tgcaaaattc ataataactc
    10321 actaaataaa tgaggcacgc cgaaacgtgc cttgattgaa actcactata ttattcttct
    10381 tcgttaggag aggttttttc cattttctct aactgttcat cggaaagtgt gactcgtagc
    10441 tgaatcaatt ggcggctatt agctgaggtg actttaaaat caattccgtt taactcaatt
    10501 tgctcatctc gtttcgggaa ataaccgaaa gcctgcatca ctaaaccacc aatggtatcc
    10561 acctcttcgt cattaaagtc ggtagcaaaa aattcattga attttttgat gtcggtgagc
    10621 ggtaataccg cataagtatg tcttgaaagc tggcgaattg gtttgacctc ttcttcatca
    10681 aactcatctt caatatcacc cacaatttgt tcaagaatgt cttcaatggt gactaagcct
    10741 gaaaccgcac caaattcatc aaccactact gccatatgga agcgttctga acggaactct
    10801 tttagcattc ggtctaggcg tttgctttcc ggtacaataa ccgcagggcg taatacctgt
    10861 tgcagattaa agggttcaga gtcagaacgt aaatatttca ataaatcttt agagtgaaga
    10921 ataccttcga tagtatcttt ctcaccccga atcaccggaa aacgagagtg tgcggattca
    10981 ataattaaat caatacagac atctaaaggt tcattggcat caataaacac aatttgcgca
    11041 cggggaatca taatatcccg cactcgtaat tccgagattt ccattactcc ttcgatcatc
    11101 tctttggtgt cgctgtcgat caattcattt tcaacagagt ctcgaatcac ttcgactaga
    11161 tcttcacggt ttttaggctc gttttgaaaa agcccgctaa atagagagtg taaaatcgat
    11221 tttttttctg atttttcggt ggtgtttaca ctttgctgtt catcactcat agtttgttcc
    11281 acttaaataa agtacgctta taataagcaa attcagtcac aaagcaaata aaacattgct
    11341 attttcactc aaattagcat aggataagca aaaatctttt tatttcttca tattttagga
    11401 gtttgaaatg aaattaacca aaatagcatt aagtttaaca gccttagttg tcagttcgat
    11461 gagtgtggcc gggacgttaa gtacatcatc aatggtggac attttagcct ttgacgggca
    11521 acgtgttaaa tccggcacga cttcggttca aatgagtgag aataaaacgc atcaagtggt
    11581 agtggaagtc ggtgggacag ttgaagggga ttttttcacc tctgatcaaa tcattttgac
    11641 tttccaaggc agtgcggaaa atgcaaaatt agaaacgcca agattaaatt caaagttaga
    11701 tcttcgtaaa ttccaagaga atcagactgt ggcaattaaa accgattcag gtaaggttat
    11761 ttcacataaa caagatttct taaaagggga aggtttcctt gcgaaaacaa gagttgaaga
    11821 taatttaacg aaatataact tagcgaaaaa aacagcttca gttgaacagt ttgcgacggc
    11881 acctcttgaa gcaaaaggac aaattgtggt ggatacaaat aaagtttcac aagaagaatt
    11941 acagctttta tttagaaagg cagataaaga cacccaaaaa cgtttcttag aatgggcgaa
    12001 gaaaaatata aaataaacct atatcaatta ataagcggtc atttctcgcc aattttttgc
    12061 aaggtgttaa aaaaatgacc gctcatacaa tgagatttac cagcaataat agcagtaacg
    12121 ccagcctcta tacatatagt ctctatcgta attccaacga atttcttcaa gttctacttg
    12181 tgccttgtaa ttttgccaag caagcttata acaggcttgg aacattgggg cattgacttt
    12241 ttcggcatag cgtttcttaa atgctttctc ttcttgttcg gtttggctaa gtggcggatt
    12301 aaattgttgg tacattaact ccgccgtttc tacatcacat tgtttggcga gctgaacttg
    12361 caaatcttgt tctgcccgaa tttgcttcgc tttacgttca gcttgttgct ctggagttaa
    12421 agtacagcta cttaacataa gtgcgagtga aaaaatgcag cctaatttga gtgttttcat
    12481 tgctgaatcc tctagttgaa attggtgatt tattctacca cttctaactc actttcttca
    12541 agttcatcag ccatagcact aagggcatca cggctaagtt gtgcgagggc tttataaaaa
    12601 ccattgtcga aagcttctat ttttcctaag aatttgcctg cacaaggtag taaaaattgt
    12661 tcgaataata ttttttgagc taaggcagaa tcgagattat cttcgatcca agatgccgtg
    12721 agaaatagta acccaatgtg atcggcattt tctaattcag gcattgcccg ctcttgtcta
    12781 aaagctacaa aattattaac tgataatcca taggctgaaa ttgttggaga aatagcccca
    12841 ttttcagcaa aaagcgcttg atagcttgct gctaattgcg tagggttagc attcttttgt
    12901 aagagagtca gcgcattttc actttggcta tccgtattta atgcccagac ttggcgtaat
    12961 cctccttggg caagccagtt aaatgtgcca gctaaaatag ggtcggtagg gtgacgataa
    13021 aataagttgc caaacaaacg gcaaagcagg gaaaaatcgt taatggtagt ttcgttcata
    13081 atttgaaata gatagaaaaa agaattgtta gtatagcaga acacaagaga ggactgaatg
    13141 aaatatatag gcgcacacgt tagtgcttca ggtggggtgg aaaatgcagt tttgcgttcc
    13201 gtagaaattg gtgctaatgc atttgcgtta tttactaaga atcaacgtca atggcaggca
    13261 ccggcattaa aagccgaaac tatcgaaaaa tttaagcgtt tttgtaaagt gcatcatttt
    13321 tcagcagagc aaatcttacc acacgatagc tatttgatta atttaggaaa tccggaagcg
    13381 gaggcattgg agaaatctcg tgtagcattt attgatgaga tgtctcgagc aaatcaatta
    13441 ggtttaaaat tgttgaattt tcacccgggg gcgcatttaa agcaaatttc cgagcaagat
    13501 tgtttggcta gaattgcaga atcgatcaat attgcagttg aaaaagtacc gaatgttatt
    13561 gccgtgattg aaaatacggc aggacagggt tctaatttag gttggcattt cgatcatttg
    13621 gcaactatta ttgagcaagt tgaggataaa agccgagtgg gggtgtgttt agatacttgt
    13681 cacttatttt ctgccggcta tgatattagt tcttatgaaa agagcgaggc agtatttaat
    13741 gattttaacc aaacggttgg ttttcattat ttaaggggaa tgcacttaaa tggttcaaaa
    13801 acaccattag gcagcagagt ggatcgtcat cataccttaa gagaaggcac aataggaacc
    13861 gaagtgtttg catttattat gcaaaatatg cattttaacc atattcctat gattttagag
    13921 acaatttcgc ctgaaatttg ggcagatgaa ataaaatttc tacgcacatt ggaactaaaa
    13981 taggttatac tggtctgagt agtgggtcta gcagagtcta gaccttattt tgttatcttt
    14041 tttaatcttt tagaagattt agttaaggaa tttaccgctg taattgttct ggcgagacga
    14101 gacataaatt atgaaaaaaa atctttttgc aacaaccttc aagcccgtat ttattgcttc
    14161 tattttgtct gtttttggag ggtattcttc cattgctgta gcaagtttaa gttctaaacc
    14221 ggccacacca aatcaaatca ttgcaagtaa agcagaaaga ttagctaagt cttcttcagt
    14281 atttaccaat cgagcaaatc ttccaacttc ttccgctcat acagcgaatt atagtggtcg
    14341 tattaatagt gtttatcata attgggtagg gacacgctat cgtttaggcg gcataacaaa
    14401 agcaggaatt gattgttccg cctttgtgcg tgaagtaatg ggcaaagcat ttagtaaaga
    14461 tatgcctcgt tcaactgcag aacaacgcca tgtcgggcat tccatttcaa aatctgattt
    14521 acgcccaggt gatttagtct ttttccgtaa gaataaccat gtaggggttt atattggtaa
    14581 tggtaaattt gtacacgcta gttcaagtag aggggtaacc accagctcat tgtcagaaag
    14641 ctactggtca agaaactaca cacaatctcg ccgtgtaatt taataaatta caattccaag
    14701 atgaaaagaa cactcacttt tgcgagtgtt cttttttaat taaaaaagtt tatgctacgc
    14761 gttgcttagc ttgtgtaaat gctccacgag tacgcatttg atgaaccaca ttagtaatta
    14821 cacctgctat ttttacttca gcccaatcag taattctaag atttgattcg ctcacatcta
    14881 atgaaaataa aattttttca gcaatacctt ccccattctg aatttcatta aagaattgat
    14941 agaatttata ttccccatct ttttcaagca ccaatagatc attaactaaa tattggttgg
    15001 tctgttctac aatcaataaa tcgtctagtt caattcccca cgcgattaaa tttgggtttt
    15061 tcacgtggat aaaaaaagtg tctcttgggc gtttgataca aagtgagtta agatcgagct
    15121 ttacagagcg gctgctattg aaatcccgat aaagcggaat cggctgataa gctgccgttt
    15181 gatctgaaat ttgtctaatt gaagccatag taaaatcctc tatctgtttt tttatacagg
    15241 gtattttact ggctaaaata ccagtgtcaa ccattatttt ggaatttttt gtaaatttaa
    15301 ccagtgtttt gactgcttgt tatcctttaa aaagcaataa aaaagcaccc atagggtgct
    15361 tcttatgctt aaaagctgtt attataggct ttcagtgaat gtacgagtaa taacatcgcg
    15421 ttgttgctca ggggttaatg agttgaaacg aactgcataa cctgaaacac ggatcgttaa
    15481 ttgaggatat ttctcagggt tttgaatcgc atcttctaat gtttcacggc gtaaaacgtt
    15541 tacgtttaag tgctgaccac cttcaacttt aatcgttggt gcaacattaa cgggtacttc
    15601 acggtatgcg atatcaccta attcgctgat agcaacaact tgatcttctt caaatcctgc
    15661 ttttgcagct aaacaacgag cttcattttt agcttcgtct aataaccaga aagagtttaa
    15721 taagttgctg tttgatgatt ctgtgatttg tacaccttta atcattttga tatctcctct
    15781 aagattgaaa ttataaaaaa attttaaaaa ttcaaattta tttgaagtta ttgtacccct
    15841 ttttagataa aaagcgataa aaatttaacc atttttagac atgattgagt tggttgggca
    15901 aaaaatatac acttggtggt tttatgaaaa cttggacaga agctttaggc gaagaaaaac
    15961 aaaaagcgta ttttcaacaa attttacact atgtacataa cgaacgatta gccggcaaag
    16021 tcatctatcc tccgcaaaac gaggtgttta gtgcttttgc cttaaccgaa tttagtgacg
    16081 tgaaagtagt aattttaggg caagatcctt atcacggccc aaatcaagcc cacggattag
    16141 ccttttcagt taaaccgccg gttgccccgc caccttctct ggtcaatatg tataaagaat
    16201 tatctgaaga tattgaagga tttcaaattc caccgcatgg ctatttaatt gactgggcaa
    16261 aacaaggtgt ttttatgtta aataccagct taacggttga gcaaggtaga gccggttcgc
    16321 attcacaaat tggttgggaa atttttaccg ataaagtgat cgcacaatta aatcaacacc
    16381 gtgataattt agtcttttta ctttggggaa gccacgctca gagaaagggg caatttatcg
    16441 atcgtaatcg ccattgtgtg ttagcttctc cgcatccatc accactttcc gcatatcgtg
    16501 gattttttgg ttgcaaacat ttttctaaag ccaataacta cttgatttct caaggaatat
    16561 ccccaattaa ttggcaatta ccagtagatg ttagttattc ttcaacacat tagtttaagg
    16621 agcaaacgat gaattttgat ttaccgattg ttagtattgc atttgttgtg cttgttttag
    16681 ttgcattaag ttcgactatt aaaattgtgc cacagggctt tcattggaca gtagaacgtt
    16741 ttggtcgtta tactaaaacg ctaagcccgg ggttgaacat tgtcgtacct tttattgatc
    16801 gtattgggcg aaaaatgaat atgatggagc aagttttaga tattccatcg caagaggtta
    16861 tttcacgtga taatgcaagt gttgcgattg atgctgtatg ttttgttcaa acagttgatg
    16921 ctcgccgagc tgcctatgaa gtgaatcatt tagagcaagc aattgttaat ttaaccatga
    16981 caaatatgcg taccgtgctc ggctctatgg atctagatga tatgctctct cagcgtgatt
    17041 taattaacgg tagattactt tccattgtcg atgaggcgac taatatttgg ggagtaaaag
    17101 tcacccgtat tgagattagg gatgttcgtc caccgaaaga gctggttgcg gcaatgaatg
    17161 ctcaaatgaa agctgagcgt aataagcgtg ctgatattct tgaagcggaa gggattcgac
    17221 aagccgaaat tctgcgcgcg gaaggtgaaa agcaatctcg tattttaaaa gcagagggcg
    17281 aacgtcaaga agcattttta caagcagaag cccgtgaacg tgctgcggaa gcggaagcta
    17341 aagccactca aatggtttct gaagcaattg ctaaaggcga tactacagcg attaactatt
    17401 ttattgcaca aaaatacacc gaagccttga aagaaatagg ttcttcagat aacagtaaag
    17461 ttgtacttat gccgttagaa gctggaaatt tgattggttc tgttgccggt attgctgaaa
    17521 ttttaaaaag caataaaaca agatcatagc ctaaaaacgg attaattgag tatatggagg
    17581 gagtatggac tggtttttta attggattgg ctggagcata ttaggctttg tactacttgc
    17641 attagaatta gtattaccgg gtgtctttat tatgtggtgg ggatttgcct cgcttattct
    17701 tgctttcatc gttgcacttt ttacattagg gcaagcgtta caaatctcgt tatttgcgat
    17761 aattgcgact atttttagtc tgatttggtg gaaatatcag catggaaaag acaagaaaga
    17821 ggatcagagc agttccctta actctcggga gcatgctatg ctaggagctc aaggctttgt
    17881 ggttgaaatc ttacctaatg gcatagttcg aggaaaattt ggtgatacga cttggcgtgt
    17941 tatagggaat aatttacaag tagcagataa gattgaagtc cagaaagtgg aggggattac
    18001 cttatttgtc cgtaagcaat aagttgtttc ttatttagtc atagaacact aaacaaaacc
    18061 ttgaacaatt attcaag
//
LOCUS       DANLUT010000030        17743 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLUT010000030 DANLUT010000000
VERSION     DANLUT010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17743
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            216..1850
                     /locus_tag="PXB38_000876"
     CDS             216..1850
                     /locus_tag="PXB38_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL5353223.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     SEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIGGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVKKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
     gene            1904..2176
                     /locus_tag="PXB38_000877"
     CDS             1904..2176
                     /locus_tag="PXB38_000877"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL5353224.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(2236..4848)
                     /gene="pepN"
                     /locus_tag="PXB38_000878"
     CDS             complement(2236..4848)
                     /gene="pepN"
                     /locus_tag="PXB38_000878"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL5353225.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAVTKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(4998..5516)
                     /gene="hutZ"
                     /locus_tag="PXB38_000879"
     CDS             complement(4998..5516)
                     /gene="hutZ"
                     /locus_tag="PXB38_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL5353226.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NIVHLDQGHQTA"
     gene            5670..6053
                     /locus_tag="PXB38_000880"
     CDS             5670..6053
                     /locus_tag="PXB38_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5353227.1"
                     /translation="MVFTSYSIKSKKLCPTILALSVSSILSSQATYAEETTAELSEVN
                     VVAKEDVKASIEKKNKEIIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNR
                     VGISIDGVSLFLIQKKIPFINAMVI"
     gene            6020..8098
                     /locus_tag="PXB38_000881"
                     /pseudo
     CDS             6020..8098
                     /locus_tag="PXB38_000881"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            8153..8659
                     /gene="hutX"
                     /locus_tag="PXB38_000882"
     CDS             8153..8659
                     /gene="hutX"
                     /locus_tag="PXB38_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL5353228.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(8739..9956)
                     /locus_tag="PXB38_000883"
     CDS             complement(8739..9956)
                     /locus_tag="PXB38_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL5353229.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQTVG"
     gene            10117..13650
                     /gene="mfd"
                     /locus_tag="PXB38_000884"
     CDS             10117..13650
                     /gene="mfd"
                     /locus_tag="PXB38_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL5353230.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGYSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRVKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESRRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            13813..14100
                     /locus_tag="PXB38_000885"
     CDS             13813..14100
                     /locus_tag="PXB38_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5353231.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLAAKRESGQYKGVH"
     gene            14101..14313
                     /locus_tag="PXB38_000886"
     CDS             14101..14313
                     /locus_tag="PXB38_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5353232.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            14429..14689
                     /locus_tag="PXB38_000887"
     CDS             14429..14689
                     /locus_tag="PXB38_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5353233.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKQENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            14690..15079
                     /locus_tag="PXB38_000888"
     CDS             14690..15079
                     /locus_tag="PXB38_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5353234.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLGYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            15099..16337
                     /gene="pepT"
                     /locus_tag="PXB38_000889"
     CDS             15099..16337
                     /gene="pepT"
                     /locus_tag="PXB38_000889"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL5353235.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTLDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEQCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
     gene            16504..16579
                     /locus_tag="PXB38_000890"
     tRNA            16504..16579
                     /locus_tag="PXB38_000890"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16537..16539,aa:Gly,seq:gcc)
     gene            16598..16684
                     /locus_tag="PXB38_000891"
     tRNA            16598..16684
                     /locus_tag="PXB38_000891"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16632..16634,aa:Leu,seq:taa)
     gene            16726..16812
                     /locus_tag="PXB38_000892"
     tRNA            16726..16812
                     /locus_tag="PXB38_000892"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16760..16762,aa:Leu,seq:taa)
     gene            16834..16909
                     /locus_tag="PXB38_000893"
     tRNA            16834..16909
                     /locus_tag="PXB38_000893"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16867..16869,aa:Gly,seq:gcc)
     gene            16997..>17743
                     /locus_tag="PXB38_000894"
     CDS             16997..>17743
                     /locus_tag="PXB38_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL5353236.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRY"
BASE COUNT         5265 a         3519 c         3996 g         4963 t
ORIGIN      
        1 aattagaaag ttacagcaag ttatctagcc attatcagag tttatagagc tattttcttc
       61 gggatttttt tatgcaattt ttgcattgaa aggtgatatc tatcacattt ttttaaaaaa
      121 ttccttgcaa tcaaaataat aatgcctaga cttaaaaaaa ttaattagaa caaatcggct
      181 ggttgcaagc caatattcat caatggagat caaatatgca gtcaaaattc tcgctttcct
      241 tattaacaac ctcattagtg ttaggcttat cggcaaatgt gtttgcagcc aaagtgcctg
      301 aaggaacaac gcttgcagaa aaacaagaaa ttacgattaa taatggttct gagccatcaa
      361 gttttgatcc acataaaatt gagggcgtgc cggaatcgca agttgcttat cagttatttg
      421 aaggattggt aacgaaagat tctgacggca atattcagcc gggtgtggca gaaagttggg
      481 aaaatacacc ggattacaaa acgtggacgt tcaaattacg ccaagacgct aaatggtcaa
      541 acggtgatgc cgtaactgct cacgatttcg tatttgcttg gcagcgtttg gttaatccac
      601 ttacggcttc accttattca agctatttaa cttatctcaa tgtagaaaat gctcaagata
      661 ttattggcgg caagaaaaaa ccggaggaac tggcagttaa agcgattgat gatcatactt
      721 tccaggtgca gttaagccaa cctgtcccgt atgcagttga gctggcaaca cactcttctt
      781 tattacctgt acacaaagca accgttgaga aacacggcga tgcgtgggtg aaaaaaggca
      841 atctggttgg aaacggggct tataccttag ccgatcacgt tattaatgaa aaaatcgtgt
      901 ttgagcgtaa taaaaattat tggaatgata aagaaaccgt gattaataaa gcgactttct
      961 tagccattgc taatgccgca actgatgttt cacgttaccg tgccggtgat ttggatatga
     1021 ccaactatgc tcttccaccg gagcagtttg caaccttgaa aaaagagatt ccaaacgaag
     1081 tgtttacggc aagaaccctt tctacttatt actatgaaat taaccataaa cgagcaccgt
     1141 ttgataatgt gaaagtgcgt gaggcgttaa acttagcttt agatcgcacc attattaccg
     1201 ataaagtgct aggacaaggt caaacaccaa cttatgtatt tacaccgcct tatattcacg
     1261 agggtgaaaa aatccagcaa cctgcttatt ccaaagattc aatggcagat agaaaagcca
     1321 aagcgttgaa attattggaa gaagccggtt acagtaaagc gaacccgtta aaatttacta
     1381 ttctttataa taccaacgac aaccacaaga aaattgcgat tgcagtttca tcattatgga
     1441 aacaaggcac agacggcatt gttgatgtga aattagaaaa ccaagagtgg aaaacattct
     1501 tagatacccg ccgcaatgca aattatgatg tttctcgtgc aggttggtcg gcagactata
     1561 accaagcaac cacctttgtg aactatttct tatcgaactc cagcaacaat actgcgtttt
     1621 ataagagcca agcttatgat gatgcggtag cagaatctta caaagcgaca gacgcagctg
     1681 gtcgtgcagc tgcttatgca aaagcagagg agcagttagc caaagattat gcgattattc
     1741 cgatttataa ctatgtaaac ccacgtttgg tgaaacctta cgtgaaaggc tatgagggta
     1801 aagatccgca agatgatatt ttactgcgta acctctacat cgtgaaataa gacattatgg
     1861 gctgtttatt gaaaaataag cagcctattt ttatggggga agagtggtcg caaaattatt
     1921 ctcggtttac ggacgggttc aaggtgtcgc ttttcggttt tttaccttgc aggaagcgaa
     1981 tcgattaggc ataaaaggct atgtcagaaa tcgtgatgac ggctcggtag aagtggtagc
     2041 tgaagcggat gaacagacaa tcgctcaact ggaaaattgg ttacaacaag gctcacctgc
     2101 tgcaaaggtg gaacgggtaa ttgtgagcga ttatcttggt tcagaaaggt ttaaaaggtt
     2161 tgaggtaagg tattaactaa caagcggtgt catttgtaaa aaaatttgca aacgacaccg
     2221 cttgtattgc ttggtttaat ctaacgcttt ttcaattttc tcaaacagat ctcgtgctaa
     2281 attatccagc tcacgcaggc gttctagacc acgacgcatc aaggtttggc gttggttatc
     2341 gtagcgtgag agtttaatta acggctcaat aagtcgagca gcaacttgtg ggttactttc
     2401 gttaagttta atcagcgtat ctaccaagaa acgatagcct gaaccgtcaa tggcgtggaa
     2461 ggctttcggg ttttgaccgc agaatgcacc tactaatgaa cgtaaacggt tcgggttatt
     2521 aaagttaaaa cttgggtgtt ccattaaatt ttgcacgatg gataacacat cgtcgtccgg
     2581 tcgggtggct tgtagcataa accatttatc catcactaaa ccatcatgtt tccatttttg
     2641 ctcaaaatcg gctaataatg catcacggca acttagctgg gctttggtta cggcttgtaa
     2701 tgcagcaagc gtatcagtca tattatcggc attattgtaa tgcttatgca ccaacgcgtt
     2761 gcctaaatca gtaaaggcta aatagcttaa gcaagcatta cgcaaggctc gtttagcaat
     2821 atcttcagcc acgacttgat attccccgca ttggttttgg tgatataccg ctaataactt
     2881 atcttgcaag gcgtgagcaa tggaatgctg cataaattca cgcacaaccg caataccttg
     2941 tgggtcaatg gttttgaacg attctgcaaa ctcggtttct tttggcaatg tgagggttaa
     3001 tgcagttagt tccggcaggc ttgctgagtt atccaacacg aacgttaggg cattcaccaa
     3061 cccttctgag aagctgagtg gttgatgttg ctgataacgg cttaaatttt cacgcagttc
     3121 attggtatag agcatttgag ctgcatccca acgtacaaaa tcattttcag cgtgtttgag
     3181 taaggttaaa agctgctcgg tggtatagtt gtaatctaac cgtaccggtg cagagaaatc
     3241 acacagtaat gcaggcaccg ggcgttgtgt tacattatga aactcaaagg tttggtgttc
     3301 tgcggttaca tctaacacat cgcttacggt caataattca tattgtaacg gaatgcgttt
     3361 accgtcctgt tcaccatata acgctacttt aagcggaata tgcagattga gtttatccat
     3421 ctgatcgtgg gttgccggtg tcatttgtga aatatgcaag cggtatgcct tgcgggtttc
     3481 atcatattca tcggaaatgg tgagctcagg cgtgccggat tggctatacc aacggcggaa
     3541 ttgttcaaga ttaacgcctg aagcatcttc cattgcttta acgaaatctt cacaagttgc
     3601 cgcagaacca tcgtgtcttg ccacataaag ttgcatacct tgctggaatt tttcttcacc
     3661 taacagggtg tgaatcatac gaataatttc cgcccctttt tcatacacag tcacggtgta
     3721 gaaattattc atttcaatca ctttttccgg gcgaatcggg tgagccatcg ggctggcatc
     3781 ttcggcaaat tgtacggtac gcagtaaacg cacatcttca atccgttttg ccgaacgaga
     3841 ccataaatcg gaggtaaatt cctgatcacg gaagacggtt aagccctctt ttaagcttag
     3901 ttggaaccaa tcacggcagg taatgcggtt gcccgtccaa ttatggaagt attcgtgggc
     3961 aatcaccgct tcaatatcta aataatccgt atcggttgcg gtttccggtt ttgccaatac
     4021 aaatttggaa ttgaaaatat ttaacccttt gttttccatt gctcccatat tgaagaaatc
     4081 aacggcaaca atcatataaa tatctaaatc gtattccaaa ccgaaacgct cttcatccca
     4141 tttcattgaa cgttttaagc tctccatcgc ccaaggtgca cggtctaaat ttccacgatc
     4201 gacataaatt tcaagcgtga cttcacgtcc gcttttggtg atgaatttat cttggagtaa
     4261 gtcaaaatcc cccgcaacca aggcaaataa atagcttggt ttaaagaacg gatcttgcca
     4321 ttccacccag tgtctgccat cgtgcaagtc gccttgggca atgtggttgc cgttagaaag
     4381 cagatacggg tatttgctct tactagcggt gatttttgtc gtatattttg caagtacatc
     4441 agggcggtcg agcatatagg taatctggcg gaaaccttca gcctcacact gggtgcaaaa
     4501 cccgtcgccc gatttataca aaccttgtaa cgaggtgttt tgtgccggat ttaatgcggt
     4561 ttcaatttca agctcgaacc gctcggcagg cacatcggct aaatttaagg ttaaagattc
     4621 atcatctttt tgaaaggcgg aaaacggctc gccgttatat ttaagcgaaa ggaaatcgaa
     4681 actatgaccg tctaaacgaa gtgttgtcgc ctcaggattt ttacgcacga cagttagttt
     4741 tgaggtgaca aaagtgcgat ctgggtcaag ttggaagtca agataaatat cagtaatagt
     4801 gaaatcggga gctcgataat cttttctgag tttcgcttta ggttgcatag gatttccttt
     4861 ttttagttgc gtttagctca tagaatagtg tcgttattgt actaaaatag cggtaaattt
     4921 tccaaaaaat ttgaccgctt gtcgcaataa aaacggctat aaataggatt atttatagcc
     4981 gtgagtttat ttcgcaatta ggcagtttgg tggccttggt ctaaatgaac gatattaatt
     5041 aagtcatcaa caccaacatc aaaggcttta ccaaatcctt ttacaaataa gcctgccgtt
     5101 ggcttaaagc taaagagctt gaaatcttgc atatttgaca gttcatcaac taaatcgccg
     5161 tgacgagctt taagtgctgc aatgctatta ttccattcct catcagtacg ttcaatcatt
     5221 cgcactgttg cgtcaaaggt taagcgacga cgggcaaaaa tttgacggct cttactttca
     5281 tcctcaatta gcattaaaga gacttttggc acctcttgta aattacgagc gtgacgggca
     5341 atagtagtga ttaagacttg atattcgccg ttattaatta caaaaggggc atagctcaca
     5401 ttcggtacac catctttatc tatggttgca agcattatag ttttgatttg ttgttttaat
     5461 tcttcaattt ctggacctaa acggttttgt aagacctctt gacggttggt tgtcataaaa
     5521 tacctcaatt taaatagtgt tttttagatt actataaaga gtgaaaactt tcaatccata
     5581 tgagaatcat tattgactat aaatgtgatg taactgataa tacatattat taataataaa
     5641 gtatattaaa aatctatcta gggagaatca tggtgtttac ctcttattca ataaagtcta
     5701 aaaaattgtg cccgactata ttggctttaa gcgttagtag cattttgtct tcacaagcta
     5761 cctatgcgga agaaacaaca gcggaattat ctgaagtaaa tgttgttgct aaagaagatg
     5821 tgaaggcttc tatagaaaag aaaaataaag agataattca gcaagagttg attcaaaata
     5881 atcgagattt agttcgttat agccctgatg ttggcattgt taaccaaggt agacatcaaa
     5941 aaggatttgc tattcgtgga gtggaagaca accgtgtagg aataagtatt gatggtgtct
     6001 cgcttttcct gattcagaag aaaattccct ttataaacgc tatggtaatt taaatacatc
     6061 tcgccaatct atagatccgg aattagctcg tactattgaa gtatctaaag gtgcagattc
     6121 tttcaatcaa ggtagtggta atttaggcga cggagttaat tatcggacgc ttgagcctta
     6181 tgatattgtt cgtaacggta ataaatttgg tgctttttat cgcacaggat atggtactcg
     6241 taataatgaa tggttgaata cattcggtgt tggatattta ggtgagaaag ctgaggcgat
     6301 attggtttat tcaaatcgcc atgggcatga aatgaaaagt gcaggaggtt atacacttcc
     6361 tgaagattct ctacaaactc gctctttacg cagtagtaaa caaactcctg atgattctac
     6421 tcataatcat cataattatt tagccaaatt tgcttatcga tttaatgata atcaccgcgt
     6481 tggtgtttct tacagtgggc aaaataataa aaattatatt atcgaagatt cagccgttac
     6541 tattacttct ttttggcgtg aagcggaaga ccgtagtaaa cgtgatacag taaatgtttt
     6601 ttatgagtat ttcccagagt caaaatggat atctctagcg aagatagatg cagattatca
     6661 agatactgaa acatctgctt ataactatga aggtacacgc gctgaagatg caacagactg
     6721 gagccctgtt aaacaaagaa aaccaagtga caataatatt cgtattttta atactgaatt
     6781 gaaacgctta aatttccgtt tagacagcca agcattagaa tttggtaaat ggactcatca
     6841 gctatctttc aaagcctcta ctgcagagag agatttcgat gtattacata aggactcggt
     6901 ttatttatcc ggtgtttggg taaattctcc cgattctacg atgatgtacc caattaaaac
     6961 gaaacagcac actttttcat tgcacgataa gattgattta acgcatgatt ggattgcaac
     7021 gctaggcatt cgttatgatt gggcgaagta tgaacaacaa gaactcaatg gtcttgtttg
     7081 tcgtaactgc gtaaaaactg acaatgcgaa atttaatcaa ctaacttggg ttaccggttt
     7141 agaaaaacat ctgactgagg catggaaagt aggatataac attgggacag gcttccgtat
     7201 tccaaatgca tcagaaatgt attttgatta ccgtgataat gctgcaggag cttggatgtc
     7261 caatccaaac ctaaaagcgg aacgtagttt aagccaaaat ttaagtttgc aaggtagtgg
     7321 caatgttggg ctgctctcag ttaatttcca ccatactaaa tataaagatt ttttatggga
     7381 gcaagaaacc tgggatgttt accaagcata tggtagagag ttttggcgcc cggtacagca
     7441 aatgcaaaat attgattctg cgaaaatcta cgggctagaa gtgagtggta aatggaattt
     7501 aaattcagct atgccaatac ctgaaggctg gaagctattt ggagccttcg gttacagcaa
     7561 aggtagtatg tctaacgggg cagatttact ttctattcag ccgattaaag ccgtagttgg
     7621 cttagattat gaacaacctg aaggtaaatg gggagtattt tctcgcttca cattcttggg
     7681 ggctaaaaag gcgaaagatg caaaatattt aaaaacatta ccggaaaaat gccttaaaga
     7741 ggatagaacg ccaaatccgt attaccctta ttggggggat gaatatgaca ttcgttgtac
     7801 tgaatattct cacgagacag gtttagatac ctggaagcac ttaaatgcta aagcctttgt
     7861 tgtggattta tacggtttct ataaaccaac tgagaatatt acattacgtg ccggtattta
     7921 taatttgttt aaccgtaaat atcatacttg ggatacttta cgtggtttaa atacaacagg
     7981 tggaatcgtt aattctgttg gagtacgtga aaatgcaact tacggtggct atcctggatt
     8041 acaacgctat tatgaacctg gacgtaactt ctcggctaat tttgaatacc gtttctaatt
     8101 tacaaattta cttagagagc taagaaactc tctttactta aaggaacatt taatgatatc
     8161 aatcgaacaa caaaccgcct tacgcaatga attggccgaa aatccggggc aaattttaga
     8221 aatgttagcg gcaaaatatc aatgcacgct ggaagaggta atgctgaatt taccggctga
     8281 aatgctaaaa gtaaccgaag gggaacgttt tgccgaagtg ctacagcaaa tccacgaatg
     8341 ggacgatgcg attacgctga tttcgcatac ggaagatacc attattgagt ttgtgggaaa
     8401 gctcccaagc ggttcaattt ctcgtggatt ttacaatttc gaacataaag agggcggagg
     8461 cttacaaggg catctacgct acgaaaattg tgccaaaatt tatttgttgg atcgtccttt
     8521 tatgggaaaa cgtactgttt cactgatttt cattaataaa aaaggcaacg caatgtttaa
     8581 gatttttgtc ggcagagaga aaattggcgg ggcattaaaa gagcatcaaa ttaaggcgct
     8641 gtatcagttg attggctaat ctgtaaaaag tcatcgaaaa atgaccgctt gtaacttata
     8701 gaaagggcta cgatattgaa tcgtagccct tttcaatatt agcctaccgt ttgcggtaaa
     8761 tagccagcct gaattaaaaa cggaatgacc ataatgataa taccggcaat taacgcaacc
     8821 actaatgcca aattaccacc aatcacacgg taaggtaaat tcggatattg gcgacgtgct
     8881 ttccacgcta agccgatagg taaaatcata ccatagaacg caaagagtaa accggcgtaa
     8941 cctaatgcct taataaagcc gttcggatag aataaagcga acagaattgg cggtgtaaag
     9001 gtggcgatgg tcagccataa acggttagtc ggtagattta agcgttttaa caaatcgccc
     9061 acgccttcaa aaattcccat cgaaacccct aaaaatgagg taatcaatgc aagcactgag
     9121 aataagcgaa ccatttcgcc taaaatcgta ctaccggtaa tctggctagt ggctttcacc
     9181 aagccgttta aggtcggatc ttgtgtcaaa attgtggtga attcattttg gcttaatacc
     9241 ccgtgtgtag cgagctgcca caataaataa gccactagcg gaattgccgt cccgatataa
     9301 atagatttac gaattttgcc gatatctgcg tctaaatagc tattaattgt tcccataata
     9361 acgtggaaac cgaacgcagt gaagaaaatg ggtatagcag aaataatgag taagttatct
     9421 aatggaattg ctgtcaagtt ttccagcttc gctttaggca gcatcatcag caacacggca
     9481 ataaaagcaa caatttttcc caaaaacagt actcgggtta aaccatcaac cgatttcacg
     9541 ccgactacca caaatgtacc taataccgca gtgaagatta aaatgctgat tttcagtttc
     9601 atatcagcat ctgccatttc aggcattaca ccggctaaca gtgaaccacc accggtaata
     9661 taagccgcaa gtagggcata aagtagtacg agcaaactga aagtggctaa tacacgcccg
     9721 attaagccaa agtattgctc ggcaaggctt gccactccaa catctttttg cggagcggtt
     9781 tgataaactt ccataaataa taaaccggtg taggccaata aagcccataa tccgactaag
     9841 agtaatgcgg ttgccccaaa acccattccg gcagaggtga gtggcattgc aagcattcct
     9901 gcaccaatgg tagtgcctgc aatcattaat gcacttccta aaattttatt tttcataata
     9961 tgtgtgagta agagttaaaa aaggggaaca ttttatcaga attttttcgc aatgcgatct
    10021 agataacata atttctccgc ttattttgca caatcagccg tgctttagta aactaagcaa
    10081 caatttgcaa ttttttattt aaaacagacc gcttgtatgt ctttaatttc acttaatctg
    10141 ccgaaatctg acggcaattt tcaagatcat caaaccctcg gtaaccttgt cgggtattcc
    10201 gatacccttg cgatcagcca agctgcccga gccttttacg gcttgacggt ggttgtcaca
    10261 cccgacaccc gtacggcgtt acgcttggaa aaagccttgc ctcagtttgc agggctgcca
    10321 gtgcaactgt tccccgattg ggaaaccttg ccttatgaca atttttcgcc gcaccaagac
    10381 attatctccg cccgactttc tgccctgttt gaactgcaac aagggcgaca gcagattttg
    10441 ctgttgccga tcaacacctt aatgcagaag gtctgcccgc cgaattatct cgctaacaat
    10501 gtgctgttga ttaaaaaagg cgaccgtttt tcgattcaaa aactgcggtt acaactggaa
    10561 aatgccggct atcgggcggt ggaacaggtg ttggaatatg gtgaatacgc cgtgcgtggc
    10621 tcgattttag acttattccc gatgggagca gaagagccgt ttcgcctcga ttttttcgat
    10681 gatgagatcg acagtatccg cacttttgat gtggataacc aacgcaccaa aacggaaatt
    10741 gccgaaatta atttactgcc ggcacacgag ttcccgactg atagcaacgg gatcgagcat
    10801 tttagagtca aattccgtga aaaattcggt gaaatccgcc gtgagccaga gcatatttat
    10861 cagcaagtca gcaaaggcat tttaaatgca gggattgagt attggcagcc gttgtttttt
    10921 gaggaaatgg caagtctgtt tgactatttc cctgcccaaa cgctgtttat cactttcgcc
    10981 gatattcagc aaaaagctga acaatttcac caagataccc aaaaccgcta tgaaagccgc
    11041 cgagtggatc cgatgcgacc gctactgccg ccgagcgatc tctggtttgc gattgatgag
    11101 gtaaatcgct ggctgaaagg ctatccccgt ttaacgataa cttcggagaa aatccgtaaa
    11161 tcagcagcga aaatgaatgc aaatgtggct aacttgccgg atattgctat tcaatcctct
    11221 gccaaagagc cgttttctgc tttccagcaa ttccgccaaa aatttgacgg caacattctg
    11281 ttttcggtgg agagcgaagg gcgaagagaa accttgctgg atttgcttgc tccgcttggg
    11341 gtgaagccga agcaggtcaa ttcattagat gaagcacaag gtttgccatt ttccctgatt
    11401 atttcaccgc ttgatcaagg gtttgtggtg gaaacgggcg ggcacgggac ccgcccctac
    11461 gatgatgaat taaatacaaa tggcgaaaat gataataact acgtaggggc gggtcctgtg
    11521 cccgcccgca accttgccat catctgcgaa accgacctgc tgggcgaacg tgtgcaaaca
    11581 cggcgtgaga aaaaccgcaa agccgtcaat cctgatacct taatccgtaa tttagcagaa
    11641 ctcaaaatcg gacaggcggt ggtgcatttg gaaaacggcg tggggcgtta cggtggctta
    11701 accgtgctgg acgctggtgg gatcaaagcc gaatatctcg tgctacatta tgctaacgat
    11761 gccaaactct atgtgccggt tgcctcgctc catttaatca gccgttatat cggtggggcg
    11821 gatgaaactg cgccgctaca taaattaggc agtgaagcgt gggcgaaaac ccgccaaaaa
    11881 gcagcggaaa aaatccgtga tgtggcggca gaattgcttg atgtttatgc caaacgagaa
    11941 agccaaaccg gttttgcgtt tgcctacgat aaagcggaat ttgatcagtt tagtgccact
    12001 ttcccttatg aggaaacgga cgatcagaaa attgccatca atgccgtaat tagcgatatg
    12061 tgccaagcca aagcgatgga tagattggtg tgtggcgatg ttggcttcgg caaaaccgaa
    12121 gtggccattc gagcgacttt cttggcagtg atgaaccata aacaggtggt tattcttgcc
    12181 ccaactacct tgctcgccca acagcattat gagaatttca aagaccgttt cgccaattac
    12241 cctgtgaatg tggaagtgct gtctcgcttt aaaaccgcca aagagcagaa aacgattttg
    12301 caaaatgtgg cggagggcaa agtggatatt ttggtcggca cgcacaaact gttgcaagac
    12361 gatgtagcgt tccgtgatct tgggctttta gtgattgatg aagaacaccg tttcggcgta
    12421 cgccaaaaag agaaaatcaa acaactgcgt gccaatgtgg atattctgac cctcaccgcc
    12481 acgccaattc caagaacgct gaatatggca ctcaacggaa tgcgtgatct ctcgattatc
    12541 gccagcccgc cggctcgccg acttttaatc aaaacctttg tgcgacaaag tgatgaaatg
    12601 gtaatccgtg aggcaatttt gcgtgaaatt ctgcgtggtg ggcaggttta ctacctccat
    12661 aacgatgtgg caaccattga aaattgtgcc gagaaattgg ctgaactcgt gccagaggca
    12721 agaattgtga tcggacacgg gcagatgcgt gagcgtgaat tggagcgggt gatgagcgat
    12781 ttctatcatc aacgctttaa cctgctggtt tgctccacca ttattgaaac ggggattgac
    12841 gtgccgactg ccaataccat tattatcgaa cgggcggaca aattcgggct ggcacaactg
    12901 caccaactgc gtggacgggt cggacgctcg caccaccaag cctacgccta tatgctcaca
    12961 ccgcacccga aaacgctcac caaagatgcc gagcaacgct tggaggcgat gagtaccatt
    13021 gataatctcg gggccggttt tgcgttggcg acccacgatt tagaaattcg tggtgcaggc
    13081 gaattgctcg gttcggagca gagcggacag attgaaagca tcggtttttc gctctatatg
    13141 gacttgctcg aaaatgcggt caaagctttg caagaagggc gagaaccgag cctcgatgaa
    13201 atcacccaac accaagcgga gattgaattg cgtgtaccgg ccttattgcc ggacgattat
    13261 ctgcctgacg tgaatatgcg tctgtcgttc tacaagcgga tcgcaagctc ggaaaatctg
    13321 caaagcctga acgacttgaa agtggagctg atcgatcgct tcggcttgct cccagaggca
    13381 accaaaaacc tgtttgcgat tacccaactt cgcttgtcgg cacaaacgct cgggattaag
    13441 aaaatcgatg ccggcattca cggcggttat cttgaattta aaccgacagc ccagcccgac
    13501 ccaatgaagt ttatcgcctt aatccaaaaa caaccagcgg tgtacagttt tgaaggggcg
    13561 gtgaagttca aattccgctt agcactcgaa gacaaccgca agcggttaga atttgtggaa
    13621 aatttgctaa gggaggttgt gggcggataa agcctcctaa ggttgtcaat cttgaaaaac
    13681 gatttttgag atctgtatcg taaaaatcgt ttttgtttat tgcgaatcca gtaatttcat
    13741 ctaggctgtt tataacttaa aaaaatagat gtaaatatat tttatttaca atcaaaaagg
    13801 agtaaactgg caatggaaga aattaatggt tttgaatggg atagtgagaa agctcttcgt
    13861 aatcaacaaa aacacggagt tagttttatc gaggcggtaa gcgtatttta tgataataat
    13921 gcgatgttaa tcccggatcc agatcactca tctagggaag agcgtttttt gctactcggg
    13981 cgtagcaata aagataatct acttgtggtt gtgcattgcg agagaaatac caacattcgg
    14041 attatttcag cacgtttggc agcaaaacgc gaaagtgggc aatataaagg agtacattaa
    14101 atgagagatg aatacgattt ttctaatgca gtgaaaaacc cttacgcaaa agggctaaaa
    14161 agcaaaagtg tggttactat tcggattgaa gacgatgtta tcagctattt taaacaactt
    14221 gccgaagagg tgaatttgcc ttaccaaacg ttgatcaatc tttatttgaa agattgcgtt
    14281 gagcagaaac gtaaaccgac tattagttgg taatattatg atttgaaatc agtatgttat
    14341 tgagtatttg agaatgggtt atcttgccag ttgtataaaa taggcatata ctttggcata
    14401 tacactatct atcggagggt aaagtaggat ggaaaaaatt gcgagattat tccgtaacgg
    14461 gcggaaccaa gcagtgcgtt taccggttga atttgagttt gatgcagagc aagtctatgt
    14521 ttctaaacaa gaaaatggcg atattttatt atcattgaga tcgagaaata ccgagcattg
    14581 gcaacgattg tttgagctat tgcctgctgt tgtatgtgat gaaacatttt tagatacaaa
    14641 agagagaaac caatcctttg agcaacggga tccttttgag gtagcttaaa tgtatatgtt
    14701 agatacgaat actgtaagct atttttttcg tggaaatgca aatgtggtgg cgaaattgaa
    14761 gtccattaat cctgagaggc tttgtatttc atctgtaact gctgctgaat tggtttatgg
    14821 tgtggcgaaa agaaataatg ggcagctttc tcaattttta ggttattttt tatcgagtgt
    14881 aaaggtttta gattggaatt atcgttgtgc tgaactttat ggaaagttac gggcagagat
    14941 ggagaaaaat ggcaaagtaa tgggcgtgca ggatcaaatg attgctagtc acgctcttgc
    15001 tgaagagtgt attttagttt ctagcgatca ggcatttaaa atggtacctg atctgaaatt
    15061 ggagaattgg ttacactaaa ctatagtaag gaaaaacaat gaaacaatcc cttcttaacc
    15121 gtttactacg ttacacccaa attcacacaa cttcagatcc gaaaagccaa actgtgccaa
    15181 gctcgcaaca gcagtgggat ttgcttcatc tgctgaaaac ggaagtagag gcgatggggc
    15241 taagcgagat ttatcttgac cccaacggct atctgttcgc cagcttgcct gccaatattg
    15301 acaaaaccct gccggtgctt gggctgattg cccacgttga tacttcgccc gattttaatg
    15361 gtgaaaacgt gaaaccacag gtgattgagg cttatcaagg cggcaatatt ttgctaaacg
    15421 gcagtggcga ttatctttcg ccaacggatt tcccgaattt aaacaagctg attggcgaca
    15481 ccctagtcac cactgacggc acctctttgc ttggcgcaga cgacaaatcc ggcattgcga
    15541 ttattctctc ggctatcgag tatttacaag ccaatccgca cattccgcac ggcaagatcc
    15601 gcatcggctt taccaccgat gaagagatcg gtcgaggcgc agatcatttt gatgtaaacg
    15661 cattcggtgc cgatgttgcc tttacccttg atggcgggcc tctgggcgaa ttgcaatatg
    15721 aaaatttcaa tgccgatgca gcgaccgtta cgttcttcgg gcggagcgtt caccccggca
    15781 cggcaaaggg caagatgatc aacgccttag agcgagcttg cgagttccaa caccgtctgc
    15841 ctccccattt aacccctgcc accagcgaag ggcgtgaagg ctttattatg ttgcacggca
    15901 ttgagggtgg aattgataaa gcggaaattc actatatttt acgtagcttt gagcgtgatg
    15961 aattagctgc attcggcaaa atgctgaatg atacgctggc agagatgcaa cagatttacg
    16021 gcgaacagtg cggaaaagtc gagattgtcg agcaatatcg caatatgcgt gaagtgctgg
    16081 acgattacgg ctacttggtt gaaattgccg aaaacgcaat gcgtgaacaa ggcattgagc
    16141 cgaatttaga accgatccgt ggcggtactg atggctcacg cctttcattt atgggcttgc
    16201 cttgcccgaa tttatttacc ggcggcgaaa atttccacgg acgatttgag tttatttcgg
    16261 ttgatacgat ggaaaaagcc acaaaggttg taattgatat ttgtcggaaa tttgctgatt
    16321 atgatttcaa caaataaggc ggctgcaagc ggtcaaattt gatgaaaaat ttgcaaaaag
    16381 cgttattttt caccaattaa acgatttttt acagatttcc tacaaattta tttgacatta
    16441 aatctgaaat ccatagaata tgcacctgtt gagacctcta cgaggttcgt agcgttttta
    16501 aatgcgggaa tagctcagtt ggtagagcac gaccttgcca aggtcggggt cgcgagttcg
    16561 agcctcgttt cccgctccaa tttttctata tcgtgctgcc cgagtggcgg aatcggtaga
    16621 cgcaagggat ttaaaatccc tcgcctttcg gggcgtgcca gttcaagtct ggcctcgggc
    16681 accatttaga agaattaaat tttaacaaaa tagatagtta tcgaagcccg agtggcggaa
    16741 tcggtagacg caagggattt aaaatccctc gcctttcggg gcgtgccagt tcaagtctgg
    16801 cctcgggcac cattttgata attaagcaaa tatgcgggaa tagctcagtt ggtagagcac
    16861 gaccttgcca aggtcggggt cgcgagttcg agcctcgttt cccgctccaa tctagaaata
    16921 aaatagatag caccacgagg tgcttttttt gtacctgaat ttcccctcat tccaatttta
    16981 atcttgagaa acgtaaatga tgaaaaaaat taccatttta gggcttggct ggctcggact
    17041 acctttagct gaagcattac aaaataaggg ctggcgtgtt gcaggtacta agcgaacggt
    17101 cggagaatta gcgatagaat gttatcctct agatttaaat gcgttagcag tgacaagcga
    17161 aatcgagcaa ttacttgctg ctgatgcgtt agtgattgcc ttgcccctta gccaaattcg
    17221 ccctgaaaat tacggttgcg gtattcaaac attagtttcg cttgcaatag aaaagggctt
    17281 gaaacatctg gttttcacca gctcgacttc ggttttgcca atgaaatcgg gcgtttttga
    17341 tgaaaatgca gtggttgatt ctgctaacct attagtaaaa atggaaaatt ggttgctgag
    17401 ccagccaatt cattgtgata ttttgcgttt agctggcttg gtgggcaaaa aacggcaccc
    17461 ggttttttat ttggcgggaa aacagaactt gagtggagca gggcagccgg tcaatttagt
    17521 gcatttagag gactgtattg cagccatttc attgctgttg gagcagccga acgggcagcg
    17581 tatttttcat ttatgtgccg aacagcaccc aagccgtaaa gattattata gtgaaatggc
    17641 aaaacgtttt gggttagcgg atttgcattt ttctgaagaa aatcaaccgc ttgtaaggct
    17701 gataaaagca gacaaaattt gccaagagct tggttttcgt tat
//
LOCUS       DANLUT010000031        17738 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLUT010000031 DANLUT010000000
VERSION     DANLUT010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17738
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            44..541
                     /locus_tag="PXB38_000895"
     CDS             44..541
                     /locus_tag="PXB38_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5353237.1"
                     /translation="MAKKGEVKATSKSRGQPTKYKPEYVTQVEKLCLLGATDKDIADF
                     FEVAESTINNWKIEYPEFLESIKKGKLLADANVANSLYKRALGYEAPDIDIRVIDNQI
                     VETPLIKHYPPDPTSAIFWLKNRQPDKWRDKQIQEVSGTVTSQNINLSNDEFRAIAKE
                     LLEKV"
     gene            544..1923
                     /gene="terL"
                     /locus_tag="PXB38_000896"
     CDS             544..1923
                     /gene="terL"
                     /locus_tag="PXB38_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5353238.1"
                     /translation="MFQFSAAQKIVAAELARTDLYFFTRYMFQQKRGYQWLQALHHEL
                     ICAALMRVFRGECKRLIINIPPRYSKTEIAIVNFVAWCFGQVPDCEFIHASYSSTLAV
                     NNSSNIRSLIQHEAYQEIFPNVTLDSEAKNHWTTSQGGAFYATGAGGTITGFGAGKER
                     AGFGGAILIDDPHKADEARSEVMRQNVIDWFQNTVESRKNSPENTPIIVIMQRLHEND
                     LAGWLLNGGNGEEWELLCLPAIQKDGSALWPEKHSIEQLRQMEQAAPYMFAGQYMQRP
                     APLDGGVFKPTQMPIIEALPVGKIKWVRGWDLGATVGGDPTAGVKLGKCEDGSLIIAD
                     IAHGDLGPDERDNMIRNTAALDGKSVRISLPQDPGQAGKTQALYLTRMLQGYPVKTSP
                     ESGDKLTRAEPFASQVNVGNVKMLKGAWNEGLINEMRLFPNGNHDDRIDACSRAYAEL
                     LAKGSSYFG"
     gene            1991..3502
                     /locus_tag="PXB38_000897"
     CDS             1991..3502
                     /locus_tag="PXB38_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL5353239.1"
                     /translation="MFGWFKKEEPKQEIEEPKSYWANGKFYRGQPSKLFLDVLANIVQ
                     RNNEINTALSAGQDGDSESRLKMLVRNPEAISVALADWYASKAFIGYQMCAILSQNWL
                     VGKACSVPARDATRNGFDVVSINGDEISDETIKLLQRFDKKYRIRWHCEEFVRLGRVF
                     GMRIALFDIESSDPEFYEKPFNLDGVEPNSYKGIIQIDPYWCVPILVGGELNNPASQH
                     FYEPTYWQINGKKYHRSHLMIFRNDEVPDILKPVYMYGGISTPQKIMERVYSAERTTD
                     ESLGLVTSKRTTVWQTNMDAFMADFDGNREKIQAWIATRDNYGIKVGDKDDDQFSQYD
                     TTLSDLDEVIMTNYQIVAAAANVPVTKLLGTSPKGFSTGAEEAKNYHQELESIQEHDL
                     TEFVERHHQLVMKSFGNEVEDTTINWRPVDSPTAKELAELNKLKADTYSTLIMAGVID
                     GADARTVLVKDREAGFNDLGNVSEDLDLTEEEIALLNSVNVEQLQNAPEQHAD"
     gene            3477..4307
                     /locus_tag="PXB38_000898"
     CDS             3477..4307
                     /locus_tag="PXB38_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5353240.1"
                     /translation="MHQNNTQIEGKPLIANASTGERYAKSIKRLMRAMHKEALNGIQS
                     CFEAYAEDDDLPKNGSIVAQLRILFSRLLSKYNPIFAILAKKTTARMVQETLKHSTAT
                     IKMSLKEVGKDLTVNPDFMDERLKEITQSGTLEAVSLIKTLPEKYLGDVQKVLTHSIS
                     TKGKGFAELKPFLQKLYKGNERKAELVALDQTRKVYHNVQAHKLQKLGVKKFKWLHSG
                     GGREPRALHVKLSGRVFSFDDPPYIGDMYGEKVYGLPGHLPNCACSMKPVFDFEVEND
                     "
     gene            4360..5550
                     /locus_tag="PXB38_000899"
     CDS             4360..5550
                     /locus_tag="PXB38_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353241.1"
                     /translation="MDDKWITVKPNGEKGKGSPVKIDDEGRIIAGMGGKFKGEKINEI
                     RKSFNGPKTPQRETLETKKQLEKNVQTVTRKTEEKIKSADVPELRSLSKTLENISRSA
                     VATLNNESVQQEYLKLKGKVDKRIAELENLSKPLSIAEKIKALSRTQAKVERVEKSKP
                     FSAQIKEIYSHQRNTEGARDFSKISETDTVNFAKALQKINKQGGYSAQKFNEIATFAW
                     QRESFDVRQLGLNKVADDYVKAGLMKAVDPDRHIYGLTEQGAYIANSVANIVEKEKAN
                     NQPKKKGKSIPALPAGLTPVKIVNEEQVSSWGISTNSNPSASGSNYVKSEATIKKSNA
                     TYLNVPYAEKDGAKALGAKWDKFKKKWYLPAGKEMPEGLKKYATDGFSISERLDILLQ
                     RMKQ"
     gene            5547..6803
                     /locus_tag="PXB38_000900"
     CDS             5547..6803
                     /locus_tag="PXB38_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL5353242.1"
                     /translation="MTLAQDKKDIDTNGWFEVKDNPLSKEGVFLYRGSQIRLPDGTQP
                     PDLNQLYPVYRPAEELEKSIPSFRLIPWVDEHTMLGGEEMGMTPAEKKGVNGVIGEDV
                     YFKNGILFGNIKVFSERFARQIENGKKELSLGYRCSYEHSPGVWNGQKYDYIQRDLRG
                     NHLALVEKGRMGADVRVMDSSDVEPNHEQFIFTCDSIMEKKQMTLKELLENAAKQMNE
                     TSSLLSKAAELAEGGAEDDEPTPEQEQEPEMPSQESETEPEFNEEGQDDEGDVLSKLL
                     DVVERLDARIAKLEGGSGQDDDDMPPEETGKDDDNKQSNEPNAMDAAEITSRAIKAIG
                     ERDALYKKVSAFTGSFNVSAMDSADAVAKYACSKLGLKAPKGQEMAMITGYMANRTPA
                     NKQHQVSVMDGLPASGKSFLDGQINQ"
     gene            6815..7324
                     /locus_tag="PXB38_000901"
     CDS             6815..7324
                     /locus_tag="PXB38_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353243.1"
                     /translation="MTFQQKINIEQGFGVPGDIHLDSPMRAESLVMNSEGSQKNIIGY
                     AFTKDAATNEAKVGGEIASGRVFAGILANSKEYPLHGTEKGTLEPTLALPDHSRGDFV
                     TMGDVVVRVKSACKIGDFVVYDATTGELSTVADKGNLGGKQLVPNAVIYRYPVTNSSG
                     GLTVVRLTN"
     gene            7336..8466
                     /locus_tag="PXB38_000902"
     CDS             7336..8466
                     /locus_tag="PXB38_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2184 domain-containing protein"
                     /protein_id="HDL5353244.1"
                     /translation="MTKSIQKGHISGRRFATQMAAQKPVIAMDSENVKEFAALAKIGI
                     GFSQDYLNKAPQAWAMDDVQGGVFTSSTGAPIQFLQAWLPGFVHAATAPRKIDELIGM
                     TTVGEWHDEEVVQGVLEATGNAVPYGDLTPIPLANWNVEFARRTVIRFEQGIAVGKLE
                     SARAGAMRLDSAAAKRVAATNALHIERNKVGFYGYNDGNSRTYGFLNDPALLPYNTVA
                     TGKAGGTKWATKTFLEITNDITIAFSQLAAQSNGIIEPKTTPTVLALPTGADVYLGVV
                     SDMGVSVASWLKDTYPNCRVATAPQLVKANGGVDVLYLYAEEVYGDSSDDDNRVWVQA
                     VPAQFMALGAYPEGKMVKEDYTNATAGVMCKRPYAVYRASGI"
     gene            8536..8910
                     /locus_tag="PXB38_000903"
     CDS             8536..8910
                     /locus_tag="PXB38_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353245.1"
                     /translation="MPYIYSTLTCDNAYTIYSDGANGLKVPQGSVIVKGGTGIANDRL
                     ITPLGIITSVSEEELKQLKANPIFKQHLENGFIVVQEDGKAQDAEKVAADMSLDNKDA
                     PVTPSDYQAENAGTKVKNNKGK"
     gene            8913..9344
                     /locus_tag="PXB38_000904"
     CDS             8913..9344
                     /locus_tag="PXB38_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4054 domain-containing protein"
                     /protein_id="HDL5353246.1"
                     /translation="MNITDFRTMFPVFDDLDDPTIELWAEVAEEHLKASWVLNGKRLE
                     IAMRLMTAHLLHTNNVVINADGTAQQNSSGGGIVASASEGSVSVSFATPPTKNAWQHW
                     LAGSPYGLQLWALLKQWSAGGFYIGGLPERKAVRKVGGVFV"
     gene            9341..9946
                     /locus_tag="PXB38_000905"
     CDS             9341..9946
                     /locus_tag="PXB38_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353247.1"
                     /translation="MSAKFKAALEARIKAVKDANKKVVKVGIVGHQRYDDGTPVAYVA
                     AIHEYGGIFTVPARQATIYRQIDKNGEWTQKNGSRFVSKKKSNFATEVTIPAHTITIK
                     PRPFFRPAFSNNRKKWQKEISNLLKQGHSVEEALELVGSVAAGDVFEALSKVETPKLA
                     ESTIKAKEKRYKSKSDYRPDKPLFASGLLSESISYVVVDKE"
     gene            9949..10653
                     /locus_tag="PXB38_000906"
     CDS             9949..10653
                     /locus_tag="PXB38_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353248.1"
                     /translation="MQLTQSHIERINRLWLAMSFDSKEWDESKHPRAANGQFGKGGSQ
                     SAMKSVKANIGRGRSAMNTAIAEKRTVHRAMYHNELGWIDFEWGDTGKIKASGKTKGA
                     MGISHIIESRMRKDNLSYEQATKMLTKNVVETIAKGKTVDKFEKGNVTALKIDHEKCR
                     VSLRKSKGSNAWIITAFELFEDAGSKGDGKTTATEHQSYSARIDAGASSKNSITPRSI
                     SNQVKKRINSLFQRNR"
     gene            10661..11041
                     /locus_tag="PXB38_000907"
     CDS             10661..11041
                     /locus_tag="PXB38_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353249.1"
                     /translation="MNLRQIANRAITTVNPNIPAVLKLNAGTETDDTGKRVAKFDEIN
                     VKIQPQSLSTNDLQLFDSLAQQGQLLNVYISGQIHALRRLSQQGADKLVFKAFGEKTE
                     SEWLIKSVAESFPNWCKVVIWRQK"
     gene            11026..11532
                     /locus_tag="PXB38_000908"
     CDS             11026..11532
                     /locus_tag="PXB38_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353250.1"
                     /translation="MAAEVTLNTTHNDIYREVRAYLLGLFHLEGDQVIRGYSNNAPLP
                     NPPFILMNIIHEQALSTNAYDYSIDEGNVEVMQSLEIQMQLDFYGETSGEISRKFCTL
                     WRNLYACERLERCQPLHCDEPKYLPFTNEASEYEERYMVTAYLTYNPVITHEQDFITN
                     PRISIHSL"
     gene            11548..13026
                     /locus_tag="PXB38_000909"
     CDS             11548..13026
                     /locus_tag="PXB38_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3383 domain-containing protein"
                     /protein_id="HDL5353251.1"
                     /translation="MFQSIPASRIVNISPAVLSAGGSPLSMNAVFLSKNQNLPTAQAV
                     PFATADAVGEYFGFASEEYQAAAVYFKGFDNSTIKPGTLFFFAYNEAAEGAFLVGNSV
                     KGLSLEELKTVSGSLTINIDGVEKTASSINLRSSKSFSQAAETISSALGDVTVSFDPQ
                     LQSFKISSGTTGSSSAITFATGDVADKLGLSQSAGAVISQGSAETSPAETMQQVIKST
                     LNWATFTTVFEPSLDDKKAFAKWSNDQDQRFLYVAWGKEAGAVQAGNNTCFGAWLKES
                     AYNGTVAIYGGLDKAAFVCGATASIDFTERQGRITYKFKGQAGLTADVTDATVAQILE
                     DNGYNYYGAWATANDRFLFLSPGQIAGKWKWIDAYINQIRLNSQLQLALITLLTSAKS
                     VPYNALGVALQRAACQDPIQEALDFGSIQIGVALSEQQKALINKDTGMDTAAQIEAQG
                     YSLYIGKTSAQVRGKRQSMPMKLWYTDGGSVHAINLASINVQ"
     gene            13084..13527
                     /locus_tag="PXB38_000910"
     CDS             13084..13527
                     /locus_tag="PXB38_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353252.1"
                     /translation="MRTNIDKTLTAANSILLVRAKGYNKSWVKMEGYAADNAFDFGQG
                     AIGETVIGVDGVQSGGFTPYEVDLNIQLQANSPSRSFFDGVINHINNNQETVPFEFSC
                     EIPSIGKRYSATGFLVNIPGGTNAKKLLESATYSFKVVNNGAEDI"
     gene            13662..14183
                     /locus_tag="PXB38_000911"
     CDS             13662..14183
                     /locus_tag="PXB38_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor N-terminal domain-containing
                     protein"
                     /protein_id="HDL5353253.1"
                     /translation="MKALKAKFFGSDILVINQNDKPYVPMKQVAENIGLVWHAQFERL
                     QRNEVLSQGIRVIRIPSNGGEQEAVCLPLHYLNGWLFGVNPSRVNPEIKEKLIRYQTE
                     CYEVLWDYWTTGIAKWEDIRQQRENLEENESESKKRGSEAGRALQKRKVEKHTYEIGI
                     ERLDRMEQLLLEF"
     gene            14251..14655
                     /locus_tag="PXB38_000912"
     CDS             14251..14655
                     /locus_tag="PXB38_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353254.1"
                     /translation="MALKTKKITIEKGRDAGTTFLITEMPIAKADKWASRTLLALASG
                     MEGIPSASEGMLGMARVALAAFKQIPEEKALPLLDELLDCVEIVMDSGSTRPIDLAIG
                     DVSDITTLWKLRKEAFALHIDFLDLELTPISE"
     gene            14682..14828
                     /locus_tag="PXB38_000913"
     CDS             14682..14828
                     /locus_tag="PXB38_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353255.1"
                     /translation="MNVSSVVGVVVSSKLATLHELQTIYGLEDALDLIEVFSVDTYNH
                     RDNK"
     gene            14828..17497
                     /locus_tag="PXB38_000914"
     CDS             14828..17497
                     /locus_tag="PXB38_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5353256.1"
                     /translation="MSEVIDTLAIEIAANDSFTAVAKPLLSLLERLEGAVNKNTEALD
                     NHGKAAESAAKGTKKLNTEQGKGEKSTKKSTKALQEQEKQIKKNEKVAKNLLQAIGGF
                     TKAIGALGTMILAGVGLDRLVLDTAKANKELAMTSKNLGMTSQSLAAWRGAAELSGGS
                     AQGLTGYLNNLSAGLTRLTVQGDASVTQFFSQLGINLLDGSQKAKKLEDIMLELADKF
                     SSMDRVKAFGIAQQMGIDEGTFEMLAQGRQGLEENLQKTAKIYKSNQQDLETARKLTA
                     ATAYLNQQFEGLKLMIANAAMPVLLKIADVTNAFFEYLQKNENLVKGVFYGIAGAISI
                     ALIPMLISGASAALAFIAPFLPMILIVAGLAAAIGLLYDDYEKWANGGTSLFNWGLFK
                     KWIFDADFTVGNLKNAFADLLTGYKSWEDAVNAAKSWLELKGFTKDGKMSIDSLATGF
                     KNVAKDIYNSLLPALDKVLNVINLLLDGEFVAAWDAAKELGKDAFNAAVDFVGDNIVG
                     DALKGVGGIIDAGVTNIEEAVNTGKKYWNGEITGSEALKEVTGNFAKNAEKAVDEVVN
                     FADNAITRVENGFVRFVNIWGGFDPDEVGPTGNENKLMDSKKGFSKGNFVFEGQQSVK
                     GLTQEETGALAAQMVKRESGGNLRAENQYGYLGLYQFGAAALVDAGLIDDAKYRAAVR
                     KHGKGLSNGSDADVHKAFLADSSNWTIKGGREAFLSNKAIQDNAIVALMNKNVGYLGS
                     TYQGSAEHKAGLLMAAHLKGAGGAKAFANSGIDSSDGNGTKISDYYNTGRKAIQLAKQ
                     GKSIQSKPINLNTPVGGYAVANALKANQHTFTTMQNLAQPQNINNNQKTEVAFNGGIH
                     INSTAGTLGGTAQDFVNGVQNRVNVMQFNTGLT"
     gene            17513..>17738
                     /locus_tag="PXB38_000915"
     CDS             17513..>17738
                     /locus_tag="PXB38_000915"
                     /inference="COORDINATES: protein motif:HMM:NF025386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4236 domain-containing protein"
                     /protein_id="HDL5353257.1"
                     /translation="MARKSKNLFSFRKRIKVLPGITLNLSRSGISTTLGARGASVNVG
                     DKGVFLNTGIPGTGIYNRQKILSLSKDNSDE"
BASE COUNT         5618 a         3320 c         4248 g         4552 t
ORIGIN      
        1 ttgctaatct attaaatgca atgaagtaaa ggaatttaac ccaatggcta aaaaaggcga
       61 ggttaaagcc acgtctaagt cacgtggtca acctacaaaa tataaaccag agtacgttac
      121 tcaagttgaa aaattatgtc tgcttggcgc aacggacaaa gatatagccg atttttttga
      181 agtggctgaa tctactatta ataactggaa aattgaatat cctgaattct tggagtccat
      241 aaaaaaagga aagttattag ctgatgcgaa tgtagccaac agcctttata aaagagcatt
      301 gggctatgag gctccagata ttgatattcg agtgattgat aatcaaattg ttgaaacgcc
      361 tttgattaag cattatccgc cagatccaac atcagccatt ttttggctca aaaataggca
      421 gcctgataaa tggcgtgata agcaaattca agaggtttca gggactgtta ccagccaaaa
      481 catcaaccta tccaacgatg aatttagggc gattgccaaa gaattattag aaaaggtgta
      541 gttatgtttc agtttagtgc agcacaaaaa atcgtggcgg ctgaactggc aagaaccgat
      601 ctctattttt tcactcgcta tatgtttcag caaaagcggg gttatcaatg gctacaagca
      661 ctacatcacg aattgatttg tgccgcgtta atgcgagtgt ttcgtggcga gtgtaagcgg
      721 ttaatcatca acattccacc acgttattca aagacagaaa ttgcgattgt gaatttcgtg
      781 gcgtggtgct ttggacaagt gccggactgc gagtttattc acgctagtta ttcatctacg
      841 cttgcggtta ataatagttc aaatatccgc tcacttattc aacacgaagc ctatcaagaa
      901 atcttcccga atgtcacact tgatagtgaa gcaaaaaacc attggacaac ctcacaaggc
      961 ggcgcgttct atgccaccgg tgcaggcggt acgataaccg gttttggtgc aggtaaagag
     1021 cgagccggtt ttggcggagc aattctgata gacgatccgc ataaagctga tgaggctcgc
     1081 tccgaagtaa tgcggcaaaa tgtgattgat tggtttcaga ataccgttga gagccgtaag
     1141 aacagtccgg aaaacacgcc gattatcgtg attatgcaac gcctgcacga gaacgattta
     1201 gccggttggt tattaaacgg cggaaacggt gaagagtggg aattgttgtg tttgcctgct
     1261 attcagaaag acggttcagc attatggccg gagaagcaca gtattgagca acttcgccaa
     1321 atggaacaag cagctcccta tatgtttgcc ggtcaatata tgcaacgccc agcaccactt
     1381 gacggcggtg tatttaagcc aacgcaaatg ccgatcattg aagcgttgcc ggtaggtaaa
     1441 atcaaatggg tgcgtggctg ggacttgggg gcaacagtgg gcggagatcc gaccgccggt
     1501 gttaagctcg gcaaatgcga agatggttcg ctgatcattg cagatattgc acacggcgat
     1561 ttagggccgg acgaacggga taatatgatc cgcaacacgg cagccttaga cgggaaaagt
     1621 gtgcgtatta gcttaccaca agacccgggg caagctggga aaactcaagc cctgtattta
     1681 acccgaatgc tacaaggcta tcccgttaaa accagccctg agagtggcga caagctcacc
     1741 cgagccgagc cgtttgcctc acaagtgaat gtaggtaacg tgaaaatgct taaaggggcg
     1801 tggaatgagg gattgatcaa tgaaatgaga ttattcccga atggcaatca cgatgaccgc
     1861 atagacgctt gttctcgtgc ttatgcagag ctgttggcga aagggtcttc atattttggt
     1921 taattgcaaa attttattga aatccaaccg cttgtagcaa tacaggcggt tttttattac
     1981 agagagaaat atgtttggtt ggtttaaaaa agaagagcca aaacaagaaa tagaagagcc
     2041 taaatcctat tgggctaacg gtaaattcta tcgtgggcag ccgtctaaat tgtttcttga
     2101 tgtgttggcg aatatcgttc agagaaataa tgaaattaat accgcacttt ctgccggtca
     2161 agatggcgat agtgaatcac gcttgaagat gttggtgcga aatcccgaag caattagtgt
     2221 ggcactggcg gattggtatg cttcaaaggc attcattggc tatcagatgt gtgcgatttt
     2281 gtcgcaaaac tggcttgtag gcaaagcctg ttctgtacct gcacgagacg caaccagaaa
     2341 cggctttgat gtagtctcta tcaatggcga tgaaatctca gatgaaacaa tcaagctgct
     2401 tcaacgcttt gataaaaaat accgtatccg ttggcattgt gaagagtttg tacgcttagg
     2461 gcgtgtgttt ggtatgcgga ttgcattgtt tgacattgag tcaagcgatc ctgaatttta
     2521 tgaaaaaccg tttaatttag acggtgtaga accaaacagc tacaaaggga ttattcaaat
     2581 cgatccttac tggtgtgtgc ctattttagt cggcggtgaa ttgaataacc cggcaagtca
     2641 gcacttttac gaaccgacct attggcaaat caacggtaaa aaataccacc gttcgcactt
     2701 gatgattttc cgcaatgatg aagtgccgga tattttaaag cctgtctata tgtatggcgg
     2761 tatttcaacg ccgcagaaga ttatggaacg ggtttacagt gcggagcgaa caaccgatga
     2821 atcgttggga ttagttacct caaaacgcac aaccgtatgg caaaccaata tggacgcttt
     2881 tatggcggac tttgacggca atcgggaaaa aattcaagcg tggattgcaa ctcgtgataa
     2941 ctacggtatt aaggttggcg ataaagacga tgaccagttc agccagtacg acacgacatt
     3001 gagcgacctt gatgaagtga ttatgactaa ctatcaaata gtagccgctg ctgcaaatgt
     3061 gccggtaaca aaattacttg gcacatcacc gaaaggattt tcgactggtg cggaagaggc
     3121 gaagaactat caccaagagt tagagagtat tcaagaacac gatttgaccg agtttgtaga
     3181 acgtcatcat cagcttgtga tgaaatcatt tggtaatgag gtagaagata ccacaattaa
     3241 ctggcgaccg gttgattctc caacagcaaa agagctggca gagttgaata agctgaaagc
     3301 cgatacttac tctacgctaa ttatggctgg tgtaattgat ggtgctgacg ctcgaactgt
     3361 gttagtaaaa gaccgagaag ccggttttaa tgatttaggc aatgtcagcg aagatttaga
     3421 tttaactgaa gaagaaatcg cattacttaa ttcggtcaat gtggagcaac tgcaaaatgc
     3481 accagaacaa cacgcagatt gaaggcaagc cactaatagc caatgcttca acaggtgagc
     3541 gttatgccaa aagcattaag cggttaatgc gagcaatgca caaagaggcg ttaaatggta
     3601 ttcaatcttg ctttgaggct tatgccgaag atgatgacct gccaaaaaac ggctcgattg
     3661 tggcgcagtt gcggattttg tttagtcggc ttttaagtaa gtataatccg atttttgcaa
     3721 ttttagccaa aaaaacaacc gctagaatgg tgcaggagac gctcaaacac tctactgcaa
     3781 ccattaagat gagcttgaaa gaggtcggca aagatttaac ggttaatcct gattttatgg
     3841 atgagcgact gaaagaaatt acccaatccg gcacgcttga agcggtatcg ctaataaaaa
     3901 ccttgcccga gaaatacttg ggcgatgtac aaaaggtgct gacacactcg atttcaacaa
     3961 aggggaaagg ctttgcggaa ttaaaaccgt ttttgcaaaa actctacaaa gggaatgagc
     4021 gaaaagcgga actggttgct ctcgatcaaa ctcgtaaggt ttatcacaat gttcaggctc
     4081 ataaattgca aaaattgggt gtaaaaaaat tcaaatggct acattcaggc ggtgggcgtg
     4141 agccgagggc cttacacgtt aaactaagcg gtcgggtatt ttcgtttgat gacccgcctt
     4201 atattggcga tatgtacggc gaaaaggttt atggtttgcc cggtcatctg ccaaattgtg
     4261 cgtgcagtat gaagcctgtc ttcgattttg aggtagaaaa tgattaacat cacacaatca
     4321 catagaaacc gtattgaaag actgttttcg gttgtcgcaa tggacgataa atggatcaca
     4381 gttaagccta acggcgaaaa aggtaaaggc tcaccggtca aaattgacga cgaaggtcga
     4441 atcattgccg gtatgggtgg caaattcaaa ggcgagaaaa ttaacgaaat tcgtaagagt
     4501 tttaatgggc caaaaacgcc acagcgagaa acattagaaa caaagaaaca acttgaaaag
     4561 aacgttcaga cagtaactcg taaaactgag gaaaagatta agagtgcgga tgtgcctgaa
     4621 ctacgaagtt tatctaagac gttagaaaat atctctcgaa gtgccgtagc gactttaaac
     4681 aatgaaagcg tacagcaaga atacctgaag ttgaaaggca aggttgataa aagaattgct
     4741 gagttagaaa atttatctaa accactaagt atagcagaaa aaattaaggc tttatcacgt
     4801 actcaagcaa aggtagaacg ggtggaaaag tcaaaacctt tctctgctca aattaaagag
     4861 atttattccc atcaacgaaa tactgaagga gcaagagatt tttcaaaaat aagtgaaact
     4921 gataccgtta attttgcaaa agcattgcaa aagattaaca aacaaggtgg atattcagct
     4981 cagaaattta atgaaatcgc aacatttgcg tggcaaagag aaagttttga tgtaaggcaa
     5041 ttaggcttaa ataaggttgc tgatgattat gtcaaagcag gtttgatgaa agcagtcgat
     5101 cctgataggc atatttatgg actaacagag caaggtgcct atattgcaaa tagtgttgct
     5161 aatattgttg aaaaggaaaa agcgaacaat caacctaaga aaaaaggtaa aagcattccg
     5221 gctcttcctg ctgggttaac tcctgtgaaa attgtaaatg aggagcaggt aagctcttgg
     5281 ggaatatcaa caaacagtaa tccgtcagct tctgggagta attatgttaa atcagaagct
     5341 acaataaaaa aatctaatgc tacttactta aatgtcccat acgccgaaaa agacggggca
     5401 aaagctcttg gtgcaaaatg ggataagttt aagaagaaat ggtatttacc ggcaggtaaa
     5461 gaaatgccgg aagggttaaa gaaatatgcg actgatggtt tttcaatctc cgaacgctta
     5521 gatattttgt tgcaaaggat gaaacaatga cactcgcaca agacaaaaaa gatattgaca
     5581 caaacggttg gtttgaagtg aaagacaacc ccctcagcaa agagggggtt tttctttatc
     5641 ggggttcgca aattcgatta cctgacggca cacaaccacc ggatttaaac caactttacc
     5701 ctgtttaccg ccctgctgag gagttggaaa agtcaatccc tagctttcgc ttaattccgt
     5761 gggtggacga acacacgatg ttaggcggtg aggaaatggg aatgacaccg gctgaaaaga
     5821 aaggcgtaaa tggggtaatt ggggaagacg tttattttaa aaacggcata ttattcggaa
     5881 acattaaggt gttttcagaa cggtttgccc gacaaatcga gaacggcaag aaagagcttt
     5941 ctctcggtta tcggtgcagt tatgaacata gtcccggcgt ttggaatggg cagaaatatg
     6001 actatatcca gcgggattta aggggcaatc atttagcctt agtcgaaaaa ggcagaatgg
     6061 gggcagatgt tcgagttatg gatagcagtg atgttgagcc aaaccacgaa cagtttattt
     6121 ttacttgtga ttccataatg gagaaaaaac aaatgacatt aaaagaattg ctggaaaacg
     6181 cagcaaaaca gatgaatgaa acctcctcac ttttgagcaa agccgcagaa ttggcggaag
     6241 gtggtgcgga agatgacgag ccaacgcctg agcaggagca agagcctgaa atgccaagtc
     6301 aagagtctga gactgaacct gaatttaatg aagaggggca agacgatgaa ggcgatgtgt
     6361 taagcaaatt gcttgatgta gtcgagcgtt tagatgcccg tattgcgaaa ttagaaggtg
     6421 gcagcggtca agatgatgac gatatgccac cggaagaaac tggtaaggac gatgacaaca
     6481 agcagtcaaa tgaaccaaat gcaatggatg cggcggaaat taccagtcgt gctattaaag
     6541 ctattggtga acgagatgct ctgtataaga aagtctctgc atttactggg tcgtttaatg
     6601 tatcagcaat ggactcagcc gatgcagtag ctaaatatgc ttgctcgaaa ttaggcttaa
     6661 aagccccaaa agggcaagaa atggcgatga ttaccggtta tatggcaaac cgtacgccgg
     6721 caaataaaca gcaccaagtg agtgtaatgg acggcttacc ggcaagcggt aaatcattcc
     6781 ttgatggtca aatcaatcaa taaggtaggt agaaatgaca tttcaacaaa aaatcaatat
     6841 tgaacagggc tttggtgtac cgggtgatat tcatcttgat tccccaatgc gtgcagaaag
     6901 ccttgtaatg aactcagagg gttcacaaaa aaacattatt ggttacgctt tcactaaaga
     6961 cgctgcaacc aatgaggcaa aagtaggcgg tgaaattgca agtggtcggg tgtttgcagg
     7021 tattttggca aactccaaag aatacccatt acacggtaca gaaaaaggca cattagagcc
     7081 gacattagca ttgccagatc acagtcgtgg tgatttcgtt acgatgggtg atgtcgtcgt
     7141 tcgtgtgaaa tctgcgtgta agatcggcga ttttgttgtg tacgatgcga ctaccggcga
     7201 actttctacc gttgcagata aaggcaattt aggtggtaaa cagttagtgc cgaatgcggt
     7261 gatttatcgc tatccggtaa ccaatagtag cggcggttta accgtagttc gtttaacaaa
     7321 ttaaggaaat gatagatgac taaatcaatt caaaaagggc atatcagcgg tcgccgtttt
     7381 gcaactcaaa tggcggcaca gaaaccggta attgcaatgg actctgaaaa tgttaaggag
     7441 tttgcagcac tggcaaaaat cggtattggc tttagccaag actacttaaa taaagcaccg
     7501 caagcgtggg caatggatga tgtgcaaggc ggagtattta caagtagcac cggtgcaccg
     7561 attcaattct tgcaagcgtg gctaccgggt tttgttcacg ctgcaactgc accccgtaaa
     7621 atcgatgagt taatcggtat gacgactgta ggcgaatggc acgatgaaga agtcgttcaa
     7681 ggtgtgttag aagccacagg caatgcagta ccatacggcg acttaacgcc aattccgtta
     7741 gcaaactgga acgtagaatt tgcacgccgt accgtaattc gctttgaaca aggcattgcg
     7801 gtaggtaaat tagaatctgc ccgtgccggt gcaatgcgtt tagacagtgc agctgcaaaa
     7861 cgtgtggcgg caaccaatgc gttacatatt gagcgtaaca aagtcggttt ctacggctat
     7921 aacgatggca actctcgcac ctacggtttc ttaaacgatc cggcattatt gccatataac
     7981 accgttgcaa ccggcaaagc aggtggcaca aaatgggcaa ctaagacgtt cttagaaatt
     8041 actaacgaca tcaccattgc gttttcgcaa ttagccgccc aatcaaacgg cattattgag
     8101 ccaaaaacta cgccaacggt attagcatta ccaaccggtg cggatgtata tcttggtgtt
     8161 gtgtctgata tgggcgtaag cgtagcttcg tggttaaaag acacttaccc aaattgtcgt
     8221 gtagcaactg ctccgcaatt agtaaaagcg aatggtggcg ttgatgtgtt atatctctac
     8281 gctgaagaag tttatggcga cagctcggac gatgataatc gtgtttgggt gcaagccgta
     8341 ccggcacagt ttatggctct cggtgcttac cctgaaggca aaatggtgaa ggaagattac
     8401 accaacgcaa ctgccggtgt aatgtgtaaa cgcccttatg ctgtttatcg agcttccggc
     8461 atttaatgca aaaaaacaac aaaaaacgac cgctctttat gagcggtttt ttattaccta
     8521 aacaggagaa acataatgcc ttatatctat tcaaccttaa cttgtgataa tgcttatacc
     8581 atttattcag acggtgcaaa cggcttaaaa gtgccacaag gtagcgtaat tgttaaaggt
     8641 ggcacaggga ttgcgaatga ccgtttaatc acaccattag ggattatcac ttcggtatcg
     8701 gaagaagaac ttaaacaact caaagcaaac ccgattttta aacagcattt agaaaatggt
     8761 tttattgtgg tgcaggaaga cggcaaagca caagatgctg aaaaagtggc tgcggatatg
     8821 tcgttagaca ataaagatgc accggttacg ccgtctgact atcaagctga gaatgccggc
     8881 accaaagtaa aaaacaacaa aggtaagtaa caatgaacat caccgacttt cgcacaatgt
     8941 ttcctgtatt tgatgattta gacgatccaa caatcgagct ttgggcggag gtggcggaag
     9001 aacatttaaa agcaagttgg gtattaaacg gcaagcggtt agagattgca atgcgattaa
     9061 tgaccgctca tttactccat accaacaatg ttgtgataaa tgcagacggc acagcacaac
     9121 aaaatagcag cggtggtggc attgttgctt ctgcttccga gggtagcgta agcgtttcat
     9181 tcgcaacacc gccgactaaa aacgcttggc agcattggct tgccggttcg ccctatggct
     9241 tgcagttgtg ggcgttgcta aaacaatggt ctgcaggtgg tttttatatc ggcggtttgc
     9301 cggaacgtaa agcagtgcgg aaagtcggtg gggtgtttgt gtgagtgcaa aatttaaagc
     9361 agcgttggag gcacggatta aagccgtgaa agacgcaaat aaaaaggtgg ttaaagtcgg
     9421 tattgttgga catcaacgct atgatgatgg cacgcctgtt gcttatgttg cggcgattca
     9481 cgagtacggc ggaatattta ctgttcctgc cagacaggcg actatttatc gacaaataga
     9541 taaaaatggc gaatggacac agaaaaatgg tagtcgcttt gtcagcaaga aaaaatcgaa
     9601 ttttgcgaca gaagtaacta ttcctgctca tacaatcacc attaagccga gacctttttt
     9661 tagacctgct ttctccaata ataggaaaaa gtggcaaaaa gaaatttcaa acctattaaa
     9721 gcaagggcat tctgtagaag aggcattaga gcttgtcggt agtgttgccg ccggtgatgt
     9781 atttgaggca ctaagcaaag tagaaacacc caaattagct gagagtacaa ttaaagcgaa
     9841 agaaaagcgt tataaatcta aatcagatta ccgcccagac aaacctcttt ttgcaagtgg
     9901 cttgctttca gaatccatct catatgttgt tgtagataag gagtagttgt gcaactgaca
     9961 caatcacaca ttgaacggat taatcgctta tggctggcaa tgtcatttga cagcaaagag
    10021 tgggacgaaa gcaaacaccc gagggcggca aacgggcagt ttgggaaagg tggctcacaa
    10081 tctgcaatga agtctgtgaa agcgaatatc gggcgaggtc gctcagcgat gaataccgca
    10141 atcgcagaaa aaagaactgt tcatcgtgca atgtatcata acgaacttgg ctggattgat
    10201 tttgagtggg gtgatactgg aaaaattaaa gccagtggga aaaccaaagg tgctatgggt
    10261 atatctcaca ttattgaatc tcgtatgaga aaagataatt taagttatga acaagctacc
    10321 aaaatgctga caaagaatgt cgtggaaacc attgctaaag ggaagactgt tgataagttc
    10381 gagaaaggaa acgtaacggc acttaaaatc gaccacgaga aatgccgagt atctcttaga
    10441 aaatcaaaag gcagtaatgc ttggattatt actgcctttg agttatttga agatgcaggt
    10501 agcaaggggg atggcaagac taccgctact gaacatcaat cctattccgc tcgtattgat
    10561 gcaggagctt caagcaaaaa cagtataacc ccaagatcaa tttctaatca agtgaaaaaa
    10621 cgaataaatt cgcttttcca aagaaatagg taaatgaaca atgaacctac gccaaatcgc
    10681 aaatcgtgcg atcaccacag tcaatccgaa tattccggca gtattgaaac tcaatgccgg
    10741 aacagaaacg gatgacaccg gcaaaagagt ggcaaagttt gatgaaatca acgtcaaaat
    10801 tcagcctcaa agcctttcaa ccaatgattt acagcttttt gacagtctcg cccaacaggg
    10861 tcagttgctt aatgtttata tttcagggca gattcacgcc ctacgccgcc tttctcaaca
    10921 gggagcggat aaattagtgt ttaaggcttt tggcgaaaaa acggaatcag aatggctgat
    10981 taaatccgtt gccgaaagtt ttcctaactg gtgcaaggtg gtgatatggc ggcagaagta
    11041 accttaaaca ccactcataa tgatatttat cgagaagtcc gggcttattt gctcgggctt
    11101 tttcatttag agggcgatca ggttattcga ggctatagca ataacgcacc gctaccaaat
    11161 ccgccgttta ttttgatgaa tattattcac gaacaagcct tatccactaa tgcttatgat
    11221 tacagcattg atgaaggcaa tgtagaagtg atgcagagcc ttgaaattca gatgcaactt
    11281 gacttttacg gcgagacaag cggtgaaatt tcacggaaat tttgcacatt atggcggaat
    11341 ttatacgcct gtgagcgatt ggagcgttgc cagccgcttc attgtgacga accgaaatat
    11401 ttgccgttta ccaatgaagc cagcgaatac gaggagagat atatggtaac ggcatattta
    11461 acctacaacc ctgtgatcac tcacgaacaa gattttatta ccaacccaag aatttctatt
    11521 cattctttat aggagaacaa catagctatg tttcaatcta ttcctgcttc ccggattgtg
    11581 aatatcagtc ctgcggtatt aagtgccggt ggttcgccac tctcaatgaa tgccgtgttt
    11641 ttaagcaaaa atcaaaatct gccgactgct caagccgtac cgtttgcgac tgctgatgcg
    11701 gtaggggaat acttcggctt cgcctcagaa gagtatcaag cggcggcagt ttactttaaa
    11761 ggctttgaca actcaaccat caaacccggc acactgtttt tctttgccta caacgaggca
    11821 gcagaagggg ctttcttggt tggtaattca gtaaaagggt tgtcattgga agaattgaaa
    11881 acggtttcag gctctcttac tatcaatatt gatggtgtag agaagaccgc ttcgtcaatt
    11941 aacctccgtt catcaaaaag tttttcgcag gcggcagaaa ctatttcttc tgcactgggc
    12001 gatgtaacgg tttcttttga tccgcagttg caatcattca agatttcatc cggcacaaca
    12061 ggttcatcat ctgcgatcac tttcgcaacc ggtgatgttg cagacaagtt aggcttatcg
    12121 caatcagccg gtgcggttat ttcccaaggt agtgctgaaa catcgccggc tgaaacaatg
    12181 cagcaggtga tcaaatccac tttaaactgg gcgacattta ccaccgtatt tgagccaagt
    12241 ttagacgaca aaaaagcctt tgcgaaatgg agtaacgacc aagatcagcg tttcttgtat
    12301 gttgcttggg gcaaagaagc cggtgcggta caagccggta ataacacttg tttcggagcg
    12361 tggttaaaag aatctgctta taacggcaca gttgctattt atggcggact agataaagcc
    12421 gcttttgtgt gtggtgcaac cgcttctatt gatttcaccg aacgacaagg acgaattact
    12481 tataaattca aagggcaagc cggtttaact gccgatgtaa ctgatgccac tgttgcacag
    12541 attttggaag ataacggcta caactattat ggagcttggg caaccgcaaa cgaccgcttc
    12601 ttgttcttgt cgccgggtca gattgccggc aaatggaaat ggattgacgc ttacatcaat
    12661 caaattcgcc tgaatagcca attacaactt gccttgatta ccttgcttac ttcggcgaag
    12721 tctgtgccat ataacgctct cggcgtggct ttacaacgtg cggcttgtca agatccgatt
    12781 caagaggcgt tagatttcgg ctctatccaa attggtgtgg cattaagcga acagcaaaaa
    12841 gccttaatca ataaagacac cggaatggat accgccgccc aaattgaggc acaaggttat
    12901 tcactctata ttggcaaaac ttcggcacag gtgcgaggta aacgccagtc aatgccgatg
    12961 aagttatggt acaccgacgg cggcagtgtt cacgccatta accttgcttc tattaacgtt
    13021 caataacagt aacaagcggt caaattcgac cgcttttttg caaaaaaagg aaacgaataa
    13081 attatgcgta caaatattga taaaactctg accgccgcaa acagcattct acttgtgcgg
    13141 gcaaagggtt ataacaaatc gtgggtcaaa atggaaggat acgccgccga taatgccttt
    13201 gacttcgggc aaggtgcaat cggcgaaacc gtgatcggcg ttgatggtgt gcaatcaggc
    13261 ggatttacgc cttatgaagt cgatttaaat attcaacttc aagccaacag cccgagccgt
    13321 tctttttttg atggtgtgat taaccatatc aacaacaacc aagaaactgt gccgtttgaa
    13381 ttctcgtgcg aaattccgtc tatcggcaaa cgctattcgg caaccggctt tttagtgaac
    13441 attccgggcg gtacgaatgc gaagaaattg cttgaatctg cgacctattc attcaaagtc
    13501 gtgaataacg gtgcagaaga tatttaacct ttaatgttcc caaacagctt taaatcgtga
    13561 gtttacgagc ctgtaataag gtaggaatgt tgcggtaatt cacaacccga tcagaaatgg
    13621 tcgggttttt tattatccaa aattcataaa aggaaaaaat aatgaaagca ttaaaagcaa
    13681 aattttttgg ttcagacatt ttagttatca atcaaaatga taagccatat gtaccaatga
    13741 agcaggtggc agaaaatatc ggtttagttt ggcacgctca atttgagcga ttacaacgaa
    13801 atgaagtact ttcacaaggt attcgtgtta tacgaatacc ttcaaatggt ggtgagcaag
    13861 aagcagtttg tttgccgtta cattacctta atggctggct gtttggtgta aatccttctc
    13921 gtgtaaatcc cgaaatcaaa gaaaagctga ttcgttatca aacagagtgt tacgaagtcc
    13981 tatgggatta ttggacaacc ggcattgcca aatgggagga catccgccaa caacgtgaaa
    14041 acttagaaga aaatgaaagt gaatcaaaaa agcgtggcag tgaggctggg cgagcgttgc
    14101 aaaaacgaaa agtagaaaag catacctatg aaattggcat agagagacta gatagaatgg
    14161 aacagctgtt acttgaattt taaagatata gggtaaattc agcaaatgga tctgttctta
    14221 gatatttaac cacctcagag gaataaaaaa atggctttaa aaacaaaaaa aatcacgatt
    14281 gaaaagggac gagatgcagg cacgacgttt ttgattacgg aaatgccgat tgccaaagcg
    14341 gacaagtggg cttctcgtac attacttgcc ttggcgagtg gaatggaagg tatcccgtca
    14401 gcttcggaag ggatgctggg aatggcaaga gttgcactag cggcttttaa gcagattccg
    14461 gaagaaaaag ccttaccgtt attagatgaa ctattggatt gtgtagaaat cgtgatggat
    14521 agcggctcaa ccagaccgat tgatttagcg attggtgatg tgagtgacat cacaacgctt
    14581 tggaaattgc gaaaagaggc gtttgcgttg catattgatt ttttggatct cgaacttacc
    14641 ccgatctcgg agtaagtaaa gaaagcaatg ctgttgcgta tgtgaatgta agttcggttg
    14701 ttggggttgt ggtaagtagt aagctggcaa ccttgcacga attacagact atttatgggc
    14761 tggaagatgc tctagatcta attgaagtgt tcagcgtgga tacttataac catagggata
    14821 ataaataatg tcagaagtta ttgatacatt agcgatagaa attgcggcga atgatagttt
    14881 tacggcagta gcaaagccgt tattatccct attggaacgt ttagagggag cggtcaataa
    14941 aaacaccgaa gccttagaca accacgggaa agcggctgaa agtgccgcca aaggcactaa
    15001 aaagctcaat actgagcagg gtaaaggcga aaaatccact aaaaaatcga ctaaagccct
    15061 gcaagagcag gaaaagcaga tcaagaaaaa tgaaaaagtc gctaagaact tactgcaagc
    15121 gattggcggt tttaccaaag cgattggtgc attaggcaca atgattttgg ctggcgttgg
    15181 acttgaccgc cttgtgcttg atacagccaa agctaacaaa gaattggcta tgacatctaa
    15241 gaacctggga atgaccagcc aatcgttagc agcttggcga ggtgcagcag agctttcagg
    15301 cggttctgca caggggctta ccggttatct gaataacctt tctgccggtc ttacccgttt
    15361 aactgtacaa ggtgatgcct ctgttactca gtttttttct caactgggta tcaatctatt
    15421 agacggctca caaaaagcca aaaaacttga agacattatg ctggaattgg cagacaaatt
    15481 cagctcaatg gatagagtaa aagcctttgg cattgcccag caaatgggga ttgatgaagg
    15541 tacgtttgaa atgctggcgc agggcagaca aggtcttgaa gagaatttgc agaaaaccgc
    15601 taaaatctac aaatccaatc aacaggattt agaaaccgca cgcaaactga ccgcagcaac
    15661 tgcctattta aaccagcaat ttgaaggttt aaagctgatg attgccaatg ccgcaatgcc
    15721 ggtattactc aaaattgccg atgtaaccaa tgcgtttttt gaatatttgc agaaaaatga
    15781 aaaccttgta aagggggtat tttatggaat tgcgggggcg atctctattg ctctaatccc
    15841 aatgcttatt agcggtgcaa gtgctgcttt agcgtttatt gctccattcc tgccaatgat
    15901 tttaattgtt gcggggttag cagcagctat tggattgctc tacgatgatt atgaaaagtg
    15961 ggcgaacgga ggtacttcgc tatttaactg gggattattt aagaagtgga tttttgatgc
    16021 agattttacc gttggcaacc tgaaaaatgc gtttgccgat ttattaaccg gttataaatc
    16081 ttgggaagac gcggttaatg ctgctaagtc ttggctagaa cttaaaggct ttaccaaaga
    16141 tgggaagatg tctatagata gcttggcaac aggtttcaaa aatgtggcga aagatatata
    16201 taactcgctt cttcctgcac tagataaagt attaaatgtc atcaacctat tacttgatgg
    16261 agaatttgtt gcagcgtggg acgcagcaaa agagttaggg aaagacgcgt ttaatgccgc
    16321 agtagatttt gttggtgata atattgttgg tgatgcactg aaaggtgtcg gtggaataat
    16381 agacgctggc gttactaata tagaagaggc tgtcaatacg ggtaaaaaat attggaatgg
    16441 cgagattaca ggctcagaag ctcttaaaga agtaacaggg aattttgcca agaatgctga
    16501 gaaagcagtc gatgaggttg ttaattttgc agataacgcc attacaaggg tagaaaatgg
    16561 atttgttcga tttgtgaata tttggggcgg atttgaccca gatgaagttg gtcctaccgg
    16621 taatgagaac aaactgatgg atagcaagaa aggatttagt aaaggaaatt ttgtctttga
    16681 ggggcaacaa tctgttaaag gtcttacgca agaagaaaca ggggcattgg ctgctcaaat
    16741 ggtgaagcgt gaaagtggtg gaaacctcag agcggaaaat caatacggct atttaggatt
    16801 atatcagttt ggtgcggccg cattagttga tgcagggtta attgatgatg caaaatatag
    16861 agcagcagta agaaaacacg gtaaaggatt atctaatggt tctgatgctg atgttcacaa
    16921 ggcattttta gcagattcaa gcaactggac tattaaaggt ggtcgagaag ctttcttaag
    16981 caataaagct attcaagata atgcaatcgt agctcttatg aataagaatg ttggatattt
    17041 aggatctact tatcaaggtt ctgcggagca taaagctgga ttattgatgg ctgctcactt
    17101 aaaaggagct ggcggagcga aagcttttgc aaattcaggt atagatagct cagatgggaa
    17161 tggaacaaaa atatctgatt actataatac agggcgaaag gcgattcagt tagctaaaca
    17221 aggtaaatct attcagagca agcctatcaa tttgaatacg ccagttggtg gctatgcagt
    17281 agcaaatgca ctaaaagcta atcagcatac ctttaccaca atgcaaaact tggctcaacc
    17341 gcaaaatatt aacaacaacc aaaaaacaga agttgcattt aatgggggaa ttcatataaa
    17401 ctcaacagca ggaacacttg gcggaacagc ccaagatttt gttaatgggg tgcaaaaccg
    17461 agtgaatgtg atgcaattta atacgggatt aacctaatct ctttggttaa aaatggcaag
    17521 aaaatccaaa aatttattct cttttaggaa aagaataaaa gtattacctg gaattactct
    17581 aaatctaagt agaagtggta ttagtactac tctaggtgct agaggagctt ctgttaatgt
    17641 aggcgataaa ggagtttttc taaatacagg gattccaggt actggtattt ataatcgtca
    17701 aaagatctta tccttatcta aggataattc agatgaaa
//
LOCUS       DANLUT010000032        17673 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLUT010000032 DANLUT010000000
VERSION     DANLUT010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17673
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(88..1023)
                     /gene="ftsX"
                     /locus_tag="PXB38_000916"
     CDS             complement(88..1023)
                     /gene="ftsX"
                     /locus_tag="PXB38_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL5353258.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1033..1686)
                     /gene="ftsE"
                     /locus_tag="PXB38_000917"
     CDS             complement(1033..1686)
                     /gene="ftsE"
                     /locus_tag="PXB38_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL5353259.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1679..3175)
                     /gene="ftsY"
                     /locus_tag="PXB38_000918"
     CDS             complement(1679..3175)
                     /gene="ftsY"
                     /locus_tag="PXB38_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL5353260.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3254..3844
                     /gene="rsmD"
                     /locus_tag="PXB38_000919"
     CDS             3254..3844
                     /gene="rsmD"
                     /locus_tag="PXB38_000919"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL5353261.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            3928..4239
                     /locus_tag="PXB38_000920"
     CDS             3928..4239
                     /locus_tag="PXB38_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL5353262.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     E"
     gene            4261..4773
                     /gene="hpaC"
                     /locus_tag="PXB38_000921"
     CDS             4261..4773
                     /gene="hpaC"
                     /locus_tag="PXB38_000921"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL5353263.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVNTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            4891..5763
                     /gene="tehB"
                     /locus_tag="PXB38_000922"
     CDS             4891..5763
                     /gene="tehB"
                     /locus_tag="PXB38_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL5353264.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            5901..6938
                     /gene="purM"
                     /locus_tag="PXB38_000923"
     CDS             5901..6938
                     /gene="purM"
                     /locus_tag="PXB38_000923"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL5353265.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            7016..7294
                     /locus_tag="PXB38_000924"
     CDS             7016..7294
                     /locus_tag="PXB38_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL5353266.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            7437..8864
                     /gene="aspA"
                     /locus_tag="PXB38_000925"
     CDS             7437..8864
                     /gene="aspA"
                     /locus_tag="PXB38_000925"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL5353267.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(8939..10957)
                     /gene="rep"
                     /locus_tag="PXB38_000926"
     CDS             complement(8939..10957)
                     /gene="rep"
                     /locus_tag="PXB38_000926"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL5353268.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVAHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            11205..12320
                     /gene="potA"
                     /locus_tag="PXB38_000927"
     CDS             11205..12320
                     /gene="potA"
                     /locus_tag="PXB38_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL5353269.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            12307..13170
                     /gene="potB"
                     /locus_tag="PXB38_000928"
     CDS             12307..13170
                     /gene="potB"
                     /locus_tag="PXB38_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL5353270.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            13170..13937
                     /gene="potC"
                     /locus_tag="PXB38_000929"
     CDS             13170..13937
                     /gene="potC"
                     /locus_tag="PXB38_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL5353271.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
     gene            14128..15051
                     /gene="oppB"
                     /locus_tag="PXB38_000930"
     CDS             14128..15051
                     /gene="oppB"
                     /locus_tag="PXB38_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL5353272.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            15066..15965
                     /gene="oppC"
                     /locus_tag="PXB38_000931"
     CDS             15066..15965
                     /gene="oppC"
                     /locus_tag="PXB38_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL5353273.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            15975..17570
                     /locus_tag="PXB38_000932"
     CDS             15975..17570
                     /locus_tag="PXB38_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5353274.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
BASE COUNT         5105 a         3658 c         3530 g         5380 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac cagttcctag gaactggttt ttatctgcaa
       61 ttatttctct aaaaacaacc gcttgtatta gcctctacta ccaatacgga aaatatttcg
      121 cattgtcgca atttttgccg acagccagcc aataaacaca caaagcacca ctaagaagaa
      181 ggcttcgctg aaatctaatc cgttcagttc aaattgtacg gtaaacatat cagtcacata
      241 cttcactaca ccggtgaaat agctaatcgt taccgcacta aacagcaccg ctaacaggct
      301 gccaaacaag ccgtaaatca tacctgtgta taaaaacgga cgggcaataa agtgatcagt
      361 tgcccctaaa atttgttgga cttcaatcgc tgctttgcta ttggcaacat cggttcgcac
      421 actgtttcca atcactaaaa aaactgccaa cagcattaat aaggtacaca ccaccgcaat
      481 acgagcaatc agccaagtta gagcagttaa tttttccagc cagccgttat ctaaacgaac
      541 ctcctgcacc cctttaattt gttgcaaacc gttgcgtagc tccaccatcg tatcagcatt
      601 attaaaattt gctttcggtt ttaaggtaac gaccgcaggc aacgggtttt catctaaaat
      661 atctaacgct tcaccaaagc ctgaccaaga acgaaattcg tctaaacttt gttggcggga
      721 aatatagtta aatgactcaa ttttatccgt ctcaaaagca cgaatgcgat caacaacggt
      781 attcacatcg tgttctgcca aatttttgtg cagataaacg gttaattgtg gctcagggta
      841 aaattgtgtt gctgcctcgt gggtattctt ccaaagtaaa taactcacgg ttggaatcgt
      901 aagtgagacc gcaatcacca gcaccgtcag aaaagtgccg agcttgcgtt gcattaaatc
      961 ttgccaaacc gctcttaaag agtagttggt ttgagcacct aatttactaa atgaacgaat
     1021 cataatattt ccttaaaatt taagatgccc ttgctccagc actaaacacg gctttggacg
     1081 ctttgaaata atattggtat cgtgggtggc aatcagcacc gttgtgccgg cttgattaaa
     1141 ttcctcaaac aaacggaaaa tttcaaacga gagcttttca tctaagtttc cggttggctc
     1201 atcggctaat aacagcgttg ggcgatgaac aatggccctg gcaatatcga cacgttgttg
     1261 ctcaccgccg gaaaggtgca acggcagata gttcgcttta tctgccaagc caacacgctc
     1321 aagggcaatg cgggcttcac gctccacaat cgcttggttc attcccaaaa taatcaatgg
     1381 taatgcgaca ttatccaaaa tggttcggtc ggttaataag cgataatctt gatgcaccat
     1441 cccgatttgg cggcgtaaaa acggcaattc atgatgagca agtcgggtaa tatcgtgtcc
     1501 gttaaacaaa atttgcccgc cattggcacg ctcaatcccc ataattaatt ttaatagcgt
     1561 gcttttcccc gcaccggaat gcccggtaat atatgccatt ccaccggcag gtaggtggaa
     1621 atcaatgccc tgtaaggctg gctttccgcc cttataaacc ttgttcacat tagtgaattt
     1681 aatcattctg ttcgtcctcg tggctaaata aggcttcaat aaattcttct gcattaaacg
     1741 ggcgtagatc ttcaattttc tcgcccaccc caataaagcg gatcggaata ttgaattgat
     1801 cggcaatcgc aaaaatcacg ccaccttttg ccgtaccgtc taatttagtt aaggtgatac
     1861 cggttaaacc cactgcctca ttaaacaatt tcgcttggct gatcgcattt tgcccagtgc
     1921 cggcatcaag cgtaagcata atttcgtgcg gtgcggtttc atcatatttt ttcatcaccc
     1981 gcacaatttt cttcaactcg tccatcaggt tatttttgtt ttgcaaacgc cctgcagtat
     2041 cagcgattag cacgtcaatc ccttttgccg cagcggattg catcgcatca aaaatcaccg
     2101 aggcagaatc cgaaccggtg ctttgtgcca ccaccggaat gttatttcgc tctccccaaa
     2161 cctgtagctg ttcaactgcc gccgctcgga acgtgtctcc tgctgctaac attaccgatt
     2221 tgccttcttg ttggaattta cgggcaagtt tgccaatggt agtggttttc cccacgccat
     2281 tcacaccaac cattaaaatg acatacggtt ttttcgcttc caacactaac ggttgagcca
     2341 ccggttttag cacttcaccc agttccactt tcaactgttg atacaacaaa tctgcatctt
     2401 ttaattgttg cttggtagca tgttgtgtta aattgttgat gattttttgt gtggtcggca
     2461 tacctaaatc cgccacaagc aactgctctt ccagctcttc aaataactca tcatcaattt
     2521 tcttgccacg gaagaaatta cggaagcccg aaccaatatt ctgcttggtt ttaatcaagc
     2581 cttgaattaa acggctgaag aaaccgcctt gactcggttt ttcttgatat tcatcttgga
     2641 tagtagattc ttcaactgtg tcttgaacat tatttactaa ttcagtttca gcaacttctt
     2701 cggccacagc ctcttcgact tgataagtaa cttgctcttg ttcgttgaga tctaactgct
     2761 cagttgcaat attttgaaga ttttcgaccg cttgttcgcc tttttgttct tcaaatgttt
     2821 gttcgatttt atcttcaaca tcatcaaaga acgctttcgc ctcttcaact ttttcttcaa
     2881 caaactcttt gaaatcttcg actttttgtt caatggtatc ttctacttgc tcagcaaatt
     2941 gctcaatttt ttcttctttt tcctcaaaat agtcttctaa ctgatctacc ttttcttcaa
     3001 ttttatcttc cagctcatct aatttttcag aaaacgactt ctcagtttcc ggttcaacaa
     3061 taacaggctg ttccggttga atactttctt gttcttgttg aatctctttc tgttcagctt
     3121 cttctttctt accaaatcca agccaagacc aaaacccttt tttcttctct gacatatttt
     3181 tctctcattt ctcgtaaaaa tagactaaac ttacatagtc tatcaaaaaa tcccttattt
     3241 tcctttagtg agtatgaaaa aaaatcgaaa ttccccccaa tctgttcagc aaatgggcga
     3301 agtacgggtt atcgccggac tgtggcgagg cagaaaatta cctgtactaa atgccgaggg
     3361 gcttcgcccg acaaccgata gagtaaaaga aacgctgttt aactggttaa tgcacgacat
     3421 tgctcactca cgctgtcttg attgctttgc aggcagtggc tctctgggca ttgaagccct
     3481 ttcccgccaa gcacaagcgg tcgttttttt ggaaaaattt gcaaatgctg ccaaccagtt
     3541 aaagaaaaat ctccaagcat taaaatccga acaaggtagc gttattcaca ctgacaccct
     3601 cgcctattta gcacaaaaaa ataacggtga gccatttaac atcgtattta tcgatccgcc
     3661 ttttcatcaa gggtttgtac ctcaagtgct aaacttgctg gcagaaaata actggctcgc
     3721 cccgaatgcg attttgtatg tggaaaccga gaaaaatcac ccgccattag agctaccgca
     3781 aggctggcaa attttaaagg aaaaagcagc cggaatggtg gtaagccgtc tgattcagct
     3841 ataatctttt tgttttttat aactaaaaaa tataaaataa aacttatcta tctaacattt
     3901 tattaacact caaattagaa taacgaaatg aaaaaattaa cccctgatga agccattgat
     3961 attgcctacg atattttctt agaaatggca ggcgaaaatt tagatcctgc cgatatttta
     4021 ctgttcaacc tccaatttga agagcgtggt gcagtggaaa tggtcgaaac ttctgaagac
     4081 tgggatcaag aaatcgggac tttaattgac cctgatgcct ttgccgaagt ttgggttggc
     4141 ttagtcaatg aacaagatga aatggacgat gtattcgccc gtttcttaat ttcccacgat
     4201 gaagaaaacc gtgaatatca cgttgtttgg aaagaataag aaaaataaaa aggagaaaaa
     4261 atggctaata tcgacactaa tcaaccaata gaagcctcgc ttaaatttcg tgaagcaatg
     4321 gctcacttat cttctgcggt gagcattgtg acaaccaatg gcgtagccgg caaagcaggg
     4381 ctgacggttt cgtctgtttg ttccgttacc gattccccac caacgctctt attttgcatt
     4441 aataaaaaca gccacgttca cgatattatc caacaaaacg gcaaagtatg cgttaatgtg
     4501 ttaagccacg aacaagaaga cttagcaaaa cattttgccg ccattttaga aagtacaatg
     4561 gaagaacgct ttggttggga tatttggaac aacggctttg acgatcagcc tgtgttacgc
     4621 agtgctattt ctgctttaca aggcaatatt gttaatacgc acgcagtggg tacgcatact
     4681 atttttgtgg tagaagtgag ccatattgac gtagagccga accacagttt agtttatttt
     4741 gcccgccaat ttagaagcgt gaacattgac taaaatatat ttaacagaaa tttgatcaaa
     4801 tccgactttt ttagtcggat tttttatttc ctgtttttaa aacagtgcta aaattttgcc
     4861 gtttatgttt gactgacaaa aggaaacaaa atggaaaatt taatttgcta caaacaaatg
     4921 ccggtgtgga caaaagcaac cttaccacaa atgttccaag aaaagcacaa caccaaagtc
     4981 ggaacttggg caaaactcac cattctcaaa ggttctctca aatattatga attaaccgaa
     5041 gagggagaaa ttatcaagga agatattttt gatgcaaacc accaacgccc aatggttgag
     5101 cctcaacttt ggcataaggt tgaagctctt tctgacgatt tagaatgcca gttggctttc
     5161 tattgcaagc cggaagatta ttttgctaaa aaatataatc tgaccgctac ccattcagaa
     5221 gtgctaaatg ccgtcaatta taccaaaggt ggcaaagcgt tagatttagg ttgcgggcga
     5281 ggacgcaatg cactttatct gaatttactg ggttttgatg tcactgctgt tgatcataat
     5341 caagaaagca ttgattttct caactatatg atcgaaaaag aacaagctca aaacattact
     5401 accgctgttt atgatattaa cgaggcaact atcggctcgc aaaacggtga atatgacctg
     5461 attatttcca ctgttgtaat gatgttctta aaccgtgaac gcattcctgc cattattgag
     5521 aatatgcaga aaaacactaa agtcggcggt tataacttaa tcgtatgtgc aatgagtacc
     5581 gatgactacc cttgcccgat gccgttctcc tttaccttca aagaaggcga gctcgccgat
     5641 tattatcaag gttgggaatt agtcaaatat aacgaagatt taggacattt acacaaaact
     5701 gatgaaaacg gcaaccgcat tcaactacgt tttgcgacaa tgttggcgaa aaaaatcagc
     5761 taaacttaac cgcttgcagg gggaattagc ttccccctaa ttcatcaaat ccattctatt
     5821 tattttcact ttttcattcc gcaaacgttt gcttgtgcta taatggcttc gttttttagt
     5881 catttactgt tgaggttaaa gtgagcaaca cacaactaag ttacaaagat gccggcgttg
     5941 atattcacgc aggaaacgag ttagtcgaac gaatcaagcc tgatgttaaa cgcacccgtc
     6001 gccctgaagt aatgggcgga ttaggtggtt ttggtgcttt atgtgcttta ccgacaaaat
     6061 ataaagagcc gattttagtt tccggtaccg atggcgtcgg cacaaaatta cgcttagcca
     6121 ttgacttaaa caaacacgat actatcgggc aagatttggt agcgatgtgt gtgaatgacc
     6181 ttgtcgtgca aggtgctgaa ccgcttttct tcttagatta ttacgccacc ggtaaattag
     6241 aggttgatgt agccaccaat gtcgtcaaag gcattgcaga cggttgcgtg atttcaggtt
     6301 gtgctttagt gggaggtgaa acggctgaaa tgccgggaat gtaccacgaa ggcgattacg
     6361 atttagccgg attctgtgtc ggtgtggtag aaaaatctaa aatcattgac ggttcaacgg
     6421 tgaaaaccgg tgatgcctta attgcattag cgtccagtgg cccgcattcc aacggctatt
     6481 cgttaattcg taaagtattg gaagtcagcc gatccaatcc tgcaaccgat ttattggaag
     6541 acaaaccctt aagcgaacac ttattagccc caactaaaat ttatgtaaaa tcaatcctaa
     6601 aattagttga agaagttgat gttcacgcta tcgctcactt aaccggtggc ggtttctggg
     6661 aaaatattcc acgcgtattg ccggaatctg ccaaagcggt gattgatgaa tcgagctggc
     6721 aatggccggc gatatttagc tggttacagg aaaaaggcaa tatcagccgt tatgaaatgt
     6781 accgtacttt caactgcggt gtcggaatgg tgatagcctt acctgagaga gatgtcgaaa
     6841 aagcccttac tcttcttaaa gagagtggtg aaaatgcgtg gcttatcggt aaaattgaag
     6901 acttaggcac cggtagcgag caagttgaaa tccgctaatt tgcaaaataa atgctaaaat
     6961 tgaccgcttg tagtaactga tctgcaagcg gttaaatttt tattgaggaa tgcaaatgca
     7021 actattttgg cctatctact ttgtcttaat gaacctagct gccttatatt taatgtatag
     7081 tgacaaacaa aaagcgatca aaaaagaatg gcgagtgcca gaaattactc tcctctcttt
     7141 ttgcctctta ggtggggcta tcggtgttta cctaggtatg aaatactttc gccataaaac
     7201 ccaacattgg tatttccacg tcgctgttgt gctttctact tttgcttggc tgattggctt
     7261 gccttacttt tatttagctt tatcatcata ttaatttatc attacttttt ttaatccgaa
     7321 agcccaattt atatcctagt ccgctcacaa aaaatttgat ttagatcgca ttatttgtct
     7381 attaaaatcg ttattatcta ccaaaatcga ttgtcattta ttttaaggag atgaatatgt
     7441 cagatgtgcg tattgaacac gatttacttg gtgaaagaga agtacctaat agtgcttatt
     7501 ggggcattca tacattaaga gcgattgaga attttaatat ctcaaatgtc accatttctg
     7561 atgtacctga atttgtgcgt ggcatggtaa tggtaaaaaa agctactgcg ttggcaaatg
     7621 gtgaattggg tgcaatcccg aaaaaaattg ccaaagctat tgtggcagcc tgtgatgaag
     7681 tattagtgaa aggacgctgt ctcgatcaat tcccttcaga tgtttatcaa ggtggagccg
     7741 gcacatcggt gaatatgaat accaatgaag tgattgccaa ccttgcatta gaaattttgg
     7801 gcgaggcaaa aggtaaatat gatattgtca atccaatgga tcacgttaat gcaagccaat
     7861 ccaccaatga tgcctatcca accggtttcc gcatcgcggt ttataacagt atcactaaat
     7921 taatcaataa aatcacttac ctacaaactg catttgaaaa taaagccact gagttttccg
     7981 atgtactaaa aatgggaaga acgcagttac aagatgccgt gccaatgacg ctcggtcagg
     8041 aatttaaagc ttttgccgta ttattagatg aagaggttcg taaccttaaa cggacggcag
     8101 aattgcttct tgaagtgaat ttaggcgcaa ccgctatcgg tactggtctg aatacgccag
     8161 agggttactc tactcttgca gtcaaatatt tagccgaagt cacgcaactg ccttgctcac
     8221 tgtctgaaaa tctcattgag gcaacatctg actgtggtgc ttatgtaatg gttcacggtg
     8281 cattaaaacg caccgccgtc aaactttcta aagtgtgtaa tgacttacga ttactttcat
     8341 caggcccacg tgccggctta aatgaaatta atcttccgga attacaagcc ggctcatcta
     8401 ttatgccggc aaaagtaaac cctgttgtac ctgaagtcgt aaaccaagtg tgctttaaag
     8461 tgattggtaa cgacaccacc gttacttttg cagcagaggc cggtcaatta cagcttaacg
     8521 taatggagcc ggttatcggg caagcaatgt ttgaatctat cgagctgctt tccaatgcat
     8581 gtattaatct acgtgataaa tgtattgacg gtattaccgc taaccgtgac atctgccaaa
     8641 actatgtgtt cagctctatt ggtattgtga cctacctcaa tccatttatc ggccaccata
     8701 atggtgatat tgtcggcaaa atttgtgcaa ccaccggcaa aagtgtacga gaagttgtgc
     8761 ttgagcgagg cttactcacc gaagaacaac tcgatgatat tctctcgatt gagaacttaa
     8821 tgaatccgac ttataaagcc aaacgcttta ccgaagagga ataatcattg tttacaagcg
     8881 gtctgattct ggcaaaaaat tgcaaatttt taccaaaatc agaccgcttg ttatcccatt
     8941 atttcttatt tgctttcagc atcgccatta aatttgcaat atttgcagaa gattttgcct
     9001 ctttttcctg ttcggtcatt cttggctttt cactttccca ctccaaatca tcttgtggca
     9061 attccagtaa aaaccggctc ggctcaggtt tgatgatttc gccatattgg cgacgttctt
     9121 tacacagtga aaacgtgagc gtttgttggg ctcgggtaat gccgacataa gccaaacgcc
     9181 gctcttcttc tacattgtcc tcatcaaggc tggtttggtg tggcagaatc ccctcttcca
     9241 taccgattaa gaaaacgtgc ggaaattcca accctttcga ggcgtgaaga gtcattagtt
     9301 gaacttgatc ggcttcatcg tcctcttcgc cacgttcgag catatctcgc aaggttaaac
     9361 ggtttaccac ttgcaccaaa ttcatcggag gctctatttc atcgccctct aacatcgctt
     9421 gcacccattc aaacaaggtc tgcacattac ggctttgcat ttccgctact tttgggttcg
     9481 ccgccatttc atacaaatag gcttcatact gaattttcgc caacagatct tttactgctt
     9541 caatcggatc ggatctatcg gcttgatcgg caatttccac aatccagcgg gcaaaatcct
     9601 gtaaggcttg gtaaggcttt ggcgtgaggc gttgtatgag ttcaaaatca aaaatcgcct
     9661 caaacaaact gacctgcttt tcattagcaa gtatgcctaa tttttctagc gttgccgccc
     9721 caatttcccg tttcggcgta ttcacaatac gcaagaaagc tgcatcatcg tcttgattca
     9781 ctaccaaccg cagatacgcc atcatatctt tgatttccgc tcgagcaaaa aatgacgtac
     9841 cacccgaaat tttatacgga atgcggtttt gcattagcaa tttttccaac aagcgggatt
     9901 gatggttgcc tcgatacaaa attgcataat ctttgtattt ggtctttttc gagaaacgat
     9961 gggcaatcag ctcgcccaca atgcgttccg cttcgtgttc ctcatttttt gcctcaatga
    10021 cctgtaattt ttccccttgc cccagttctg aaaacagccg cttgctaaac aagtgatcgt
    10081 tattatcaat cagaatattg gcacaatgca gaatccgctg gctggaacgg taattttgct
    10141 caagtttaat cacttgcaaa tcaaaatctt cccgtaaccg ttgcatattt tcaggcttcg
    10201 ccccacgcca agagtaaatt gattggtcat catcgcccac gaccgtaaag tttggctcgt
    10261 tgccgacaat cagcttaatt aactcatatt ggctggtgtt ggtgtcttga tattcatcaa
    10321 ctaacaaata gcgaattttc tgttgccaac gagattttgc ttcgggaaat tggcggaaca
    10381 gcaacaccgg caacataatc aaatcatcaa aatccaacgc attataagcc ttaagttgat
    10441 tctggtagag ctgataaaaa tgtgaaaaca ctcgctcacg ttcatcacgc acacgagtaa
    10501 gtaccctttc aggcgaaagc aaatcgtttt tccagttaga aatagtggca attaaggctt
    10561 tcagcagatc cttatcttcc gtcacatttt caggcaataa atgtttcagc aaagcaattt
    10621 gatcctgctc atcaaacaag gtcatacccg atttaaaacc gagcaattta tattcgcgtt
    10681 ttaaaatttc aaacccaagt gtgtgaaaag tcgaaatggt taaacctttg ctgttttctt
    10741 tgccgataga atgagccacc cgttcacgca tttcccgagc agctttgttg gtaaaggtta
    10801 ctgctgcaat ctgcttaggc gaatagccac aatgtgcaat taaatgtgcg attttattaa
    10861 taatcacccg agtcttaccc gagccggcac cagccagcac aaggcaagcc cctttggtat
    10921 attctactgc ttgttgttgt tgagaattga gtttcattga atctattcaa aagtaatttt
    10981 gacaactatt ttaacggaaa gaaaacaagc ggtcgaattt tcaggaaaat ttgcaaaaaa
    11041 ctttgaaaat ccgaccgctt gttcatcaga gaaaaatccc caaaacgcaa atttttcctt
    11101 tcaatcttgc ccctttagct atatcattat aagttgattt tttgggggca aacgcctgat
    11161 tttataactc cttttctttt taatttaagg gaaaaaaaca gtagatggaa aaagtagaac
    11221 agaaagctat cattgagctt aaaaatgtaa caaaaagcta cggtagtaaa acgattctta
    11281 aaaatttaaa tttaaccatt aacgatggtg aatttttaac aattttaggc ccttccggtt
    11341 gtggtaaaac aactgcgtta cgtttaattg ccggttttga agatttaact gaaggttcaa
    11401 ttattcttga tgggcaagat gtttctaacg ttccggcgga gcaacgcccg gtaaacaccg
    11461 tattccaaag ctatgccctt ttcccacata tgacgatttt tgaaaacgtg gctttcgggc
    11521 tgcgtatgca aaaagtgcca aatgctgaaa ttgagccacg tgtgatggaa gcattacgaa
    11581 tggtgcgttt agaagaccgc gctcaacaaa aaccggctca gctttccggt ggtcagcaac
    11641 aacgtattgc aattgcccgt gcggtggtaa ataaaccgaa agtattgttg ttagacgaat
    11701 cgctttctgc gttagattat aaattgcgta aagagatgca aaatgaatta aaagcattgc
    11761 aacgtcaatt aggcattacc tttatttttg tgacccacga tcaggaagaa gccttaacca
    11821 tgtctgatcg tattatcgta atgaacgctg gtaaaatcgc tcaagacggt acaccacgtg
    11881 agatttacga agagccaagt aacttatttg tagctcgttt catcggcgaa attaacgttt
    11941 ttgatgcaac tgtaattgag cgtgttgatg caactaatgt aaaagcaaac gtagaaggtc
    12001 gcatttgcaa tatcaaagtg gaagatttag aggttcagcc gaaccaaaaa ttaaaagtat
    12061 tgttacgccc tgaagatatt gtgattgagg agttagacga aaacgaaagc tcgaaagcaa
    12121 ttatcggtca tattatcgac cgtaactaca aaggtatgac attagagtct agcgtgagat
    12181 tagatcataa cggtatgaat gtattggtta gcgagttctt caatgaagac gatccgaaca
    12241 ttgaccacga agtgggacaa aaagttgctc ttacttggta tgaaggctgg gaggttgtgt
    12301 taaacgatga aggcgaataa caaattccaa aatggtgcgg tcgcaactat tttcggttgg
    12361 ttattacttt tcgtattagt gccgaacgta ctcgttttaa tcatcagctt cttaacagaa
    12421 aaccgtcaaa gtcagtattt tgtggacttt gcatttagtt ttgatgctta taaatcactg
    12481 tttaatgaca cctatgcagc agtattgtgg aactcgctat atatggcggg cattgccacc
    12541 tttttctgtt tgatcatcgg ctatcccttt gcatttttta ttgccaaaat gccggaaaga
    12601 attcgtccgt ttttactgtt tttagtagtt ctaccgtttt ggactaactc actgattcgt
    12661 atttatggca ttaagatttt cttaggcgta aaaggctttt taaatgaaag cttgatggct
    12721 ttaggtatca tcagcgagcc aatgcgttta ttaaactcag aaattgcgat tattattggt
    12781 ttagtttaca ttctattacc ttttatgatt ctaccgcttt attcatcaat cgagaaaatt
    12841 gataaccgct tactagaagc tgcaaaagac ttaggtgcaa acgccttcca gcgttttatt
    12901 aaagtgacta ttccattaac aatgccgggc attgtcgcag gttgtttatt agtattactt
    12961 ccggcaatgg gtatgttcta tgtggcagat ttattaggcg gcggtaaaac accgttagta
    13021 ggtaacatta ttaagagctt gttcttaaat accaaccaat ttgcattagg ttcagcagta
    13081 agtattgcat taactatctt aatggcatta atgctttatg tttactatcg tgcaaacaaa
    13141 ttattaaata aaaaggtgga gcttgaataa tgaaaaagat gtttagaaac ctttttatgt
    13201 tggttgtttt tgcatatctc tatattccaa ttatcatttt agtgatcaac tcctttaatg
    13261 aagaccgctt tggattaaat tggaaaggct ttacttggaa ttggtatgag cgtttattca
    13321 gtaatgatac gcttgtacaa gcaacattga actcattaac tattgcgttc tttgcggcaa
    13381 cattctcaac cattttaggg gcattaacct ctattgcgct ttaccgttac cgtttccgtg
    13441 gtaaaaagct agtgggcgga atgttattcg tggtaatgat gtcgcctgat atcgtaatgg
    13501 cggtatctat gctcgtatta tttatgatct taggtatcaa gctaggcttt atttcgctat
    13561 taattgcaca cattactttc tgtttgcctt atgtggtaat tgcaatttcc tcacgcctca
    13621 gcgattttga cggcaaaatg ctagaagctg caaaagacct aggtgcaagt gaagtgacta
    13681 ttttgcgtaa aattatttta ccactggcat taccttcgat tatttcaggc tggttgttaa
    13741 gctttacgat ttcgttagat gacgttattg tttcatcttt cgtgacaagc ccaagctacg
    13801 aagttttacc actgaaaatt ttctcattgg ttaaaacagg tgtaacacct gaagtgaatg
    13861 cactagcaac tattatgatt attttctcat taacattagt ggtattaagc cagttagttg
    13921 tgaagaaaaa agtctaaaaa tcgtatacat aaatcggcac tttaaagagt attaaagtgc
    13981 cgattttttt acaaaaataa gctaaaaaaa caaccgctta agaataatta attcttataa
    14041 aaatagccat aactaatcaa tatctttaca aagccgttaa tttacgctat taattgccta
    14101 ccaatataac taaaaagagt ggtgcttatg ctgaagttta tttttaaacg tcttcttgag
    14161 gcgattccaa ccctactaat tctgattacc ttttcctttt tcctgatgcg gcttgccccg
    14221 ggtagcccat ttaccagtga gaaagcctat ccgccgaaag taatggcaaa tatcgaggca
    14281 aaatatcacc tgaatgaacc gctgtataag cagtattttc tttatatgga aaatctgtca
    14341 aaaggcgatt tcggtccatc ttttaaatat aaagatcaat cggtaaataa tctgattgct
    14401 tctgcgtttc ctgtttcgat aaaactgggc attactgcct ttatttttgc ggtgcttatc
    14461 ggtttaaccg caggaactat cgctgcactt aagcaaaata gtaaatggga ttatttagtg
    14521 atgggctttt caatgacggg tattattatg ccgagctttg tctttgctcc gctgttggta
    14581 ctcatgtttg cgatttatct caaatggttg cctgccggtg gttggaacgg tggtcagctc
    14641 tactatatgg ttttacctgt tctctcttta accattagct atgttgccgg cattgcccgt
    14701 attactcgtg gttcaatgat tgaggtgttg cactctaatt ttattcgcac cgctaaggca
    14761 aaaggcttgc caatgcgtaa aattattttc aaacacgctt tgcgtccggc attgttgcct
    14821 gtgatcactt atttaggccc ggcttttgtt ggcattatta ccggctcgat ggtaattgaa
    14881 agcgtgtttg gcttaccggg aatcgggcag ttgttcgtaa acggagcatt aaatcgtgac
    14941 tattcattag tattaagcct aaccattttg gtaggtacgc tcaccatttt atttaatgcg
    15001 attgttgata ttttatatgc ggtcatcgac ccgaaaattc gttattcata ggagtaaagc
    15061 ggaaaatgca aaattcttca aaaaatcaac cgcttgttga ggttacctca accattcaag
    15121 gacgaagttt atggcaagat gcacgccgcc gttttttccg aaataaggcg gctgtggcaa
    15181 gtttgattat tctttgttgt attattcttt ttattacctt tgccccaatg ctaatgccgt
    15241 ttagctatga agataccgat tggaatatga tggggattgc tccggatttt gaatctcaac
    15301 actatttcgg tactgattct tcagggcgtg atttgctggt tcgagttgca atcggtggac
    15361 gcatttcgtt aatggtaggg attgccggtg cattaattgc ggtgcttatc ggtacaatct
    15421 atggagcaat ttccggttat ttcggcggta aagtcgatat ggtgatgatg cgttttctgg
    15481 aaattttaag ctcattccca tttatgttct tcgtaatttt gctggttacg ttcttcgggc
    15541 agaatatttt cctgattttc attgcaatcg gtatggtagc gtggctgaac cttgcccgta
    15601 ttgtacgtgg tcaaactctt tcgcttaaaa ataaagagtt tgtggaagca gcgattgtgt
    15661 gtggcgtttc ccgccgtcaa attatttggc gacacattgt gcctaacgtt ttaggcttag
    15721 tggtggttta tgcctccctt gaagtaccat ctctgatttt gtttgaatcg ttcttaagtt
    15781 tcttagggct tggtacacaa gagccgatga gcagttgggg ggcattatta agcgacggag
    15841 cggcacaaat ggaaacctcg ccttggctac tggctttccc tgcctttttc ttatgtttaa
    15901 cactgttttg ttttaatttt attggtgatg gcttgcgtga tgccctcgat ccaaaagata
    15961 aatagaggtt tagaatggaa ttattagcag taaataatct cgatgtttat ttaaaaacgg
    16021 acgaagaatt agttcacgca gtgcgtaatg tctcgttctc gattgaaaaa gggcaaaccc
    16081 ttgcgattgt gggggaatcg ggttcgggta aatccgttac ttcaatggca attatgcagt
    16141 tattgcctaa aaatatcgtc tcattcggtg aacgctcaag catcattttt gaagaacaaa
    16201 acttgcttac tctatctgaa aaagcaatgc aaacagttcg aggtgatcgc atcggtatga
    16261 ttttccaaga gccaatgacc tcactcaatc cttatatgcc gattggcaag caggttgctg
    16321 agacggttca aacccataat ccgcaaatca gcaatgccga agcggaaaaa atggtgttgg
    16381 aaactttgca aaaagtaaaa attcccgatg cggaaaagaa aatgatttgc tatccgcacg
    16441 agttttccgg cggtcagcta caacgaatta tgattgcaat ggcaattatc aacaaacccg
    16501 atttattgat tgccgatgag ccgaccaccg ccctggatgt cacaacccaa gcggaaattt
    16561 tggatttaat gcacgactta cagcgtgata tgggaatggc gattatctta atttcccacg
    16621 atttacgctt ggtgcataaa tacagtgact tagtctgcgt aatgcaaaac ggcgaaatta
    16681 ttgagcgagg cgaaacggaa actgtgttca ccaatccgca acatccttat acggtggagc
    16741 tacttacccc gattccaact aatttaaaag gggaattacc gccaaatgca ccaaccttgc
    16801 ttcagggtga gcatattaag gtagattata ttttaaaacg ctcgctattc ggtaagccga
    16861 aaaaggtgtt taatgcgtta aaagatattt cattgcactt gaaaaccggc gaaacgctcg
    16921 gcattgtagg cgaatccggc tccgggaaat ctacccttgg gcgtgccatt atgcagattt
    16981 tagattatcg cggcaatatt acatttgcag gtaagacact ggctaatctg aataaagccg
    17041 aacgtcaagc cctgaaaaaa gatatgcaaa tggtgttcca agacccgttc aactcacttt
    17101 ctcctcgctt aacagttggg gaaattattg ctgagggctt aaccgtacat tgccctcaaa
    17161 tgagcaaaac cgaacggcgg gaaaaagtaa tgaaaatgtt ggaagaggtt aatctcaacc
    17221 ctgcaatgat taaccgctat ccgcacgaat tttcgggcgg acaacgccag cggattgcga
    17281 ttgcaagggc aatcatttta gagccgaaat ttgtattgct tgatgagcca acctcagcac
    17341 ttgaccgctc tactcagatc actgtaattg aattgcttaa ccgcttacag aaaaaatacg
    17401 gcttaagtta tattttcatc agccacgatt tggcggtcat caaggcactt agcgaccgag
    17461 tgattgtaat gagccaaggt gagattgtag aaagcggtga tgtcactcaa atttttgaaa
    17521 atccacaaca agaatacacc aagcggttga ttttagcctc taatttgtaa ccccttccac
    17581 aaggtcttat tctaccaaaa aacaagacct tgtcatttta tgctagcaaa acattgtaat
    17641 tttgatattt tatttcaatt ttttgaaaaa ata
//
LOCUS       DANLUT010000033        17476 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLUT010000033 DANLUT010000000
VERSION     DANLUT010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17476
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(7..1224)
                     /locus_tag="PXB38_000933"
     CDS             complement(7..1224)
                     /locus_tag="PXB38_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5353275.1"
                     /translation="MGASLIGALTITQAIIAMSFGCIVIAIGLVLIGNGGHKYGIPFP
                     IQLRSSFGTTGVKIPGILRGVPAIVWFGFQSWVGAGAINMCLKLLFGFDNLPVVYVLF
                     TVLQVGLSINGFKGIKWLENVSCVFLIGILAYMLYVVNTKFSVEIGERFANIEGTWGM
                     PFWAVTTAFLGIYSTMILNASDYSRHVKKGTTPTATGVIYVLSILPVTLFMGLIGLLV
                     TAATGNSDPIEVFATAMDNKFLTVITLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKW
                     SHATILVGILSICVMPWKLVTAESADGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTL
                     NVNDLYNKEGIFKGINWAAIIAITIGSLCSLIVVDLSWYVSLLPSGLSYYFLMKVLKS
                     SASFRKGTVLEHQ"
     gene            complement(1209..1364)
                     /locus_tag="PXB38_000934"
     CDS             complement(1209..1364)
                     /locus_tag="PXB38_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353276.1"
                     /translation="MQHNTQLNPELAKEVNVDLQPTKERIMDNFSYWASFLVAVFLLV
                     HFLWGQA"
     gene            complement(1367..2746)
                     /gene="allB"
                     /locus_tag="PXB38_000935"
     CDS             complement(1367..2746)
                     /gene="allB"
                     /locus_tag="PXB38_000935"
                     /EC_number="3.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HDL5353277.1"
                     /translation="MYDLIIKNGKIVLSDTVFNGNIAVNSGKIAAILEEGTEPDAKDV
                     IDVKGNYVFPGAIDTHTHLNDPGYEWREDYAHGTAAAVGGYTTIIDMPVQNEPALTNG
                     KIFDAKMAKVSPNAYVDYCFWGGLVPSNFEHLSELNDKGCVALKSFIGPVSPDYASLN
                     YGQTVEAMEIIQKFGGRAGFHCEDFSTIKWQEQRMKNEGRLDWRAFLDSRPFIAEMLV
                     TINIIEIAKATGCKAHICHVSHPDVAQKIKDAQEEGYDITAETCAHYLCFSEDDVIEK
                     GALFKCAPPLRSKSDVDRLWNYVVDGTFSGISSDHSPCSYDEKYNEILGQKINNVFDV
                     WGGISGIQSCVQVAFYEGCIKRGISPTVLANVMAKLPAKAFGIYGQKGDIQVGFDADF
                     TIIDPNKEWEIKAEDLQYVNKISAYVGKKGQGLPVCTIVRGKVIAQDGKLTDSKGFGK
                     FITKTKQGA"
     gene            complement(2846..4081)
                     /locus_tag="PXB38_000936"
     CDS             complement(2846..4081)
                     /locus_tag="PXB38_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
                     /protein_id="HDL5353278.1"
                     /translation="MERITQRITQNLETLKQFTATPGNGCTRLPFSPEARSAVNYLRD
                     LIVEVGLRVKEDEAGNIFGILEGEEPNLPCVMSGSHYDSVLHGGDYDGIAGVITALET
                     ARLLKESGKKFKRSFVVAGFNDEEGMRFGTGYFGSGAMLGLRDAEYCKKFLDKDGISI
                     YEAMRNYGLDPEKVQNAKWEEGSIGHFIETHIEQGPVLENQGLEIGLVTGIVGLHRHM
                     FTVHGRADHAGTTPMDMRLDAIDVATKVIAKIADWAREKNDGTVATVGYMNVLPGGIN
                     IVAEKVIFSVDIRSLNMANIEDITAKIDAALAEETKKIGSRFDKETKLVIQPVKLSEK
                     MLNILEEATKARQFSYKRLPSGAGHDSLEIGQKIPTVMIFVPSKEGRSHTPVEFTEYH
                     YFSKAAVLQQELAEQLLDE"
     gene            complement(4122..4337)
                     /locus_tag="PXB38_000937"
     CDS             complement(4122..4337)
                     /locus_tag="PXB38_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353279.1"
                     /translation="MTVKSTLESSFFKTKAGKMTLAFIVIMLAFALIMLGIYQVNNVF
                     IHIGFVLMLVAMLYSPVDVFILNRKKN"
     gene            complement(4347..5951)
                     /locus_tag="PXB38_000938"
     CDS             complement(4347..5951)
                     /locus_tag="PXB38_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5353280.1"
                     /translation="MDIPVNFFMWFMALLPIITLVILMVKFQWGATEAAPVGLLITII
                     SGIFLYKADVTLIAIESAKGIWYALIILLIVWTAVLMYQVSDAAKAFLVIRSEMSKLF
                     PNELLLVLAMGWIFESFLQGITGFGVPVAVGAPLLIGIGVRPLWAVVLPLLGQAWGNT
                     FGTLAAAWDALAGSAGLEIGNEKYFLTALWSSAFLWFWIVITGLAIAWFYGRGKALKK
                     GLVATLIIATIQGGGELLLSQVNTTISAFIPACLSILAIVLISKMSMYKEVWRVEESP
                     IMDRTKTTETEEALPNMNLLQAFIPYIVLSVMTLAILVITPVNQFLSQFKFGFAFPET
                     VTGYGFLNKAYTSYSPIAIFTHASMFLFISSIIGLIYYQRKGWIAKGGTRAIFAKSIS
                     MTMPSGIAVVGLVIMSKIMGGTGQTAVLAEGMAAVLGKTYVILSPFIGLLGTFMTGSN
                     MSSNILFGDFQMTTSKLLNANSAAVLGAQTAGGAIGSAISPSKIILGTTTANILGKEG
                     DVLKTIIWITLLPILLIGVVAYFASL"
     gene            complement(6012..6944)
                     /gene="arcC"
                     /locus_tag="PXB38_000939"
     CDS             complement(6012..6944)
                     /gene="arcC"
                     /locus_tag="PXB38_000939"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDL5353281.1"
                     /translation="MSKQTIVLALGGNALGNNLVEQREAVAKTAKVIVDILQQGKNIV
                     ITHGNGPQVGMIQRAMDDFAKSSGDEIPLPTSVAMSQGYIGIDLQNAIKYELVTRGIE
                     QKVSTILSQIEVDPKDAAFQNPDKPIGRFLTKEEADELEAKGIRTMEDAGRGYRIVVP
                     SPKPKRICELETIKTLVEAGHIVITCGGGGIPVVADENGRLVGVNAVIDKDNASSLLA
                     EKLNADYLVILTAVEKVAINWGKPNQEWLSELSTEQARQYIAEEQFAKGSMLPKVEAA
                     LKFAESGEGRRALITLLDKAAEGIAGETGTVIYS"
     gene            complement(7079..10078)
                     /gene="fdrA"
                     /locus_tag="PXB38_000940"
     CDS             complement(7079..10078)
                     /gene="fdrA"
                     /locus_tag="PXB38_000940"
                     /inference="COORDINATES: protein
                     motif:HMM:NF004760.0,HMM:NF018275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HDL5353282.1"
                     /translation="MLKTVVKKGSYQDSVVLMLLTNAISGLEGVNKVSVMMATPANKD
                     IFAQSGLDTAELLEATANDMVVVADVDQEDVINVVMEKVEAFLKQKSQASSSHSGTEV
                     VKSWNKATASLPGANLAVISIPGAYAALEANRALDEGLNVFMFSDNVSVEDEKALKEK
                     AHRKGLVVMGPDCGTGIIQGVPIAFTNSVTPGSIGIIGASGTGIQELTTIIDRLGEGV
                     ENAIGTGGRDLYEDIGGITMLDAIEAMEQNDKVKVLIVISKPPAKAVREKISARLSRY
                     SKPVITLFLGEKPTFHEENFYHAYTLDEAARLAVALVRQEPIPTFAKNSTNSTACGKT
                     LKAYYSGGTLAGEAAMLLKDALRIEGSGSKADGFMFKQDGHIVVDLGDDIYTQGKPHP
                     MIDPAKRIESMRDAVDDATTGVILFDIVLGYGSHEDMATALIPTIQELQQKAKAQSRD
                     VAFVATVCGTRSDYQGYDETVRKLVEAGVEVCETNKAAVEKSLDLLGLPFDEPTKPIQ
                     PKTVVQGENSPASEQLLRLLSEKPKIINIGLKSFADVAEKFGCQVVQFNWQPPAGGNI
                     QLIKALNFLNEYEAVDIDEANRKVIAKVVAATPIIRDNVLAKTVIKELNDGKVILHAG
                     PPIQYKDMPNTVQGSCVGAVLFEKWATDEASARALLENGDITFMPCHHVNAVGPMGGI
                     TTANMPVWVVENATDGNFAYCTMNEGIGKVLRFGAYSDEVVKRLEWMRDVLGPTLGKA
                     IRSMENGLAVNPLVAKAIAMGDEFHQRNIAASMSFFKEVAPRITAMSDLAENDKYDVI
                     KFLADTDQFFLNIMMASCKAIMDGARTITEGTVVTAMCRNGVHFGIRIAGMGDEWFVG
                     PVNTPQGLYFTGYDGEDACPDIGDSAITETLGVGGLAMIAAPAVTRFVGAGGYEDALR
                     TSNDMMEICIDRNPNYIVPNWNFQGACLGVDARLVVEKGITPVINTGIAHKVAGFGQI
                     GAGTVRPPLACFEKAVLAYARKLGFNE"
     gene            complement(10160..11212)
                     /gene="allD"
                     /locus_tag="PXB38_000941"
     CDS             complement(10160..11212)
                     /gene="allD"
                     /locus_tag="PXB38_000941"
                     /EC_number="1.1.1.154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate dehydrogenase"
                     /protein_id="HDL5353283.1"
                     /translation="MKLSREELKGLMKAKLMKAGLNDQHADITAEILTWSDERGYHSH
                     GAVRMEYYCERIFKGGITHNPKFEWKETGPASAIFEGDNGCGYVAATFAMEKAIEMAK
                     KSGIAIVGIRNISHSGAIGYYTEMAAKEGLLSISFCQSDPMAVPYGGSEPYYGTNPIS
                     FAAPADEGRNVVFDMATTVQAWGKILDKRSRGESIPPDWAVDVDGNPVTDPNKVNALV
                     PISGAKGYGLMMMVDIFSGILLGVPFGKHVSSMYHDLSEGRRLGQMHIVIDPACFCGA
                     EQFRENMAQSINELNEMSPAPGNDKVYYPGQRAEMRRDKYAATGGIEIVDKVYEYLIS
                     DDIHFDRYDHKNRFAD"
     gene            complement(11234..12019)
                     /locus_tag="PXB38_000942"
     CDS             complement(11234..12019)
                     /locus_tag="PXB38_000942"
                     /EC_number="3.5.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(S)-ureidoglycine aminohydrolase"
                     /protein_id="HDL5353284.1"
                     /translation="MGYLNGQTGYRQGLLETRSVIRKHNFVILETDGLVRNSIPNYHN
                     CDISILSSPALGASFVDYIAVVHPNGGCTQLGGNGIEVFVYLISGQLAVKNGDTDVVL
                     ESGGYIFSPADQVLSFINKSEHATKIYIHRRRYTALEGHQAITYVGNVNEIDYVEYEG
                     MKTCLIKDLLPSATDFGFDMNMHILLFKPGASHGYIETHFQEHGMLFLSGKGMYRLDD
                     EWIPVKKDDYVFMDSYCPQACYAVGDEDFVYIYSKECNRDVEL"
     gene            12093..12947
                     /locus_tag="PXB38_000943"
     CDS             12093..12947
                     /locus_tag="PXB38_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5353285.1"
                     /translation="MLKATQITLNTVQVQDTALVIEATHYLDDNIAPKANLIYLHGGG
                     LLYGTKEDLPQRHLETFTQAGLQIFAINYPLAPQAQIEEIISSIQQSIKHLQNQLHLE
                     LPYFLFGRSAGAYLALLTAVRLSQQIEIEKPKGVISYYGYGFLKDGWFDSPSPHYLKL
                     PLVIENTVQSLIATPSQEADLNTHFSCYVHARQTGKWKSLIYQGRDKFFYLDYSLRLA
                     ELNLPIFAAHATNDPDVPFAEFQALCEKFNPTKFVIAAELHDFDRDEQSKDTEELIQA
                     TIKFIQST"
     gene            complement(13052..14380)
                     /locus_tag="PXB38_000944"
     CDS             complement(13052..14380)
                     /locus_tag="PXB38_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5353286.1"
                     /translation="MSENTNLQPIPANKRIMDLLSYLFLWLGGCVSIGTFALGSGQLE
                     KGLNLTQAFVAMLIGSLLLIICLCLNDQMSYKSGVPYAVQLKSAFGTKGGILPAMLRG
                     VPAIVWYGVQSWLGGSAINQISILLVGYDNIVLYFLLFQALQIWISTTGFHGLKWLEN
                     IGAVVIIASLAYMFYVCMTKFGGRIEENLINKEGTWGLPFVSAIVAFFGVNVLVMLNV
                     GDYVRELKAGYSTTKRGVVYFLAMVPTTVFMGIIGLMISSATGIANPINAFAQAADNK
                     FLVVITLVFILFAQMTTNLASNVVPPAYALMDAFKIKHKTSVVLIGLLAIATCPWLIT
                     SDASSKGVDIFVLTYTVFFGPIFAVLLVDYYILRKQKVDIAELYDENGNRRGVNWAAI
                     LAISVGAVIGLFNADISFLTATIPTGLVYYFGMKYMASSARFRKGTILEK"
     gene            complement(14476..15882)
                     /gene="allB"
                     /locus_tag="PXB38_000945"
     CDS             complement(14476..15882)
                     /gene="allB"
                     /locus_tag="PXB38_000945"
                     /EC_number="3.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HDL5353287.1"
                     /translation="MYDLIVKNGQLVTPDRIYPATIAVKEGKFAGFLAPDIEIQAKEV
                     VDAKGHLVYPGIIDCHAHLNEPGFDYREDFETGSRAAVAAGCTTLIDMPLNNDPSLIN
                     KDVFKLKHDNVSKHSFIDFALWGGIVGDYDDSPNSIKSNSADLVELEACGVAAFKGFT
                     CPNGDLFPTVNLGNVRKALEILKPFNALSGFHCEEYGQVKERVKEAKAKIGLTNQEKI
                     REFLDAHDVWVEFVATKNIIDMSRATGGRVHICHVTHPMVAQLVKDAIYEGLPVSGET
                     CPHYLGFTEDFVFEKGGPAKCTPPLRKKEDMEKLWDYVIDGTLSCVGSDHSPAADEEK
                     NNDTHDIWEAWGGLNGIQFFLPMMFDMVVHQRKLSPSLIAKVMGVNPAKLFGLYGRKG
                     AFEIGFDADIVIVDPEKPWKVEQEKLFTKGHVTCFNGLEGKGAATHTFIRGRLVAENG
                     MYKQDAIGYGEFIRPVKR"
     gene            16007..16870
                     /locus_tag="PXB38_000946"
     CDS             16007..16870
                     /locus_tag="PXB38_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HDL5353288.1"
                     /translation="MTIKEQIINIPILKTTLYAQNAIEAAPIVMLHSRYNKTINLLIN
                     NQIFTLQPKESELSPISLITDFSITKFQQLSFQPNQPYRLNLHYSNDAIFSSKLTACT
                     SFSPNNVVWYANLAQKILQKSNAKGLNLLLQNSINDILLRAFKQYLVQAEDLYQLGEL
                     EKSTEYFTKLIGLGIGLTPSGDDFLCGFIATFQYFTQTQTAFYQTLTQKLRQHLDNTN
                     AISRRFLDCALQQQFSAPILSFFNHTQQRQEDFCLLAQRFENIGHSSGMDTLFGIYHA
                     CKWLLKKSIIT"
     gene            complement(17029..17466)
                     /locus_tag="PXB38_000947"
     CDS             complement(17029..17466)
                     /locus_tag="PXB38_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5353289.1"
                     /translation="MKSFIEDGGNRMKQIYALGLAFIVASVSLLSTKVQANQAYQTTK
                     QGLQYKELKAGSGKKPTLNDEVEVRFTSYNDKGEVFEGTFNQVPVILPIREMFSGLQQ
                     GLLLMPVGSVYEFNIPAHLGYQEEGSRAKKAALYRIELLRINP"
BASE COUNT         5353 a         4007 c         2904 g         5212 t
ORIGIN      
        1 gtcatcttat tgatgttcta gcactgtccc tttacggaaa gatgctgaac ttttcaatac
       61 tttcataaga aagtagtagc ttaaaccaga aggaagtaaa ctcacatacc aagaaagatc
      121 aaccacaatc aatgagcaaa gtgaaccaat tgtaatagct atgattgcag cccagttaat
      181 ccctttgaaa ataccttctt tattatataa gtcatttacg tttaaagtac gttttcttaa
      241 gatgtagtaa tcgacgacca ttaccgcaaa aatagggcct aagaatgccg agtaaatttt
      301 aataaacaaa gataatccat ctgctgattc agcagttacc aacttccaag gcattacaca
      361 tatagaaaga atgcccacta aaatggtggc atgcgaccat ttcattttaa atgaatccat
      421 taaaatgtaa gatggcggaa caatattatt caacacgttt gtcgtaacct gtgcaaaagc
      481 aatgaataat aacgttatta ctgttaaaaa tttattatcc attgcagttg caaatacttc
      541 aattgggtca ctattgcctg tagctgccgt aactaacaac cctattaaac ccataaataa
      601 ggttacaggg aggattgata atacataaat cacacctgtt gctgttgggg ttgttccttt
      661 tttaacgtgg cgagaataat cggaagcatt taaaatcatt gttgaataaa tacccaagaa
      721 tgctgtagtt acagcccaga atggcattcc ccaagtgcct tcaatattgg caaagcgctc
      781 gcctatttct acagagaatt ttgtattcac aacataaagc atataagcaa gaataccgat
      841 gaggaacaca caagaaacat tttccaacca tttaatacct ttaaaaccat taatggataa
      901 gccaacttga agaacagtga atagcacata aacaacaggc aagttatcaa aaccgaacaa
      961 cagttttaaa cacatattga tagcacctgc ccccacccaa ctttggaatc caaaccaaac
     1021 gattgcaggg acaccacgta aaataccagg aatttttaca cctgttgtac caaaagagct
     1081 tcgtagttgg attgggaatg gaataccata tttatgcccg ccattgccaa ttagcacaag
     1141 gccgatagca atcacaatac aaccaaacga cattgcaata atcgcttgtg ttatcgttaa
     1201 cgctccaatc aggcttgccc ccatagaaaa tgtaccaata gaaacacagc caccaaaaaa
     1261 cttgcccaat aggaaaagtt atccataatg cgttctttgg ttggctgtaa gtcaacattt
     1321 acttcttttg ctaactcagg gttaagttgt gtgttgtgtt gcattgttat gctccttgtt
     1381 ttgttttagt aataaatttt ccaaaacctt tgctgtcggt gagtttccca tcttgagcaa
     1441 tcactttacc acgtacgatg gtgcaaactg gtaaaccttg accttttttg cccacataag
     1501 cggagatttt attcacatat tgcagatctt ccgctttgat ttcccactcc ttgtttgggt
     1561 caataatcgt aaaatctgca tcaaatccaa cttgaatatc gcctttctga ccataaatac
     1621 cgaacgcttt agctggtaat tttgccatta catttgccaa tacagttgga gatattccac
     1681 gctttataca accctcatag aaagccactt gtacacaact ttgaatgcca ctaatcccgc
     1741 cccatacatc aaatacattg ttaatttttt gacctaaaat ttcattgtac ttttcatcat
     1801 aagaacaagg agaatggtcg ctactaatgc cgctaaatgt cccatctacc acataattcc
     1861 atagacgatc aacatcagat tttgagcgaa gtggcggagc acatttgaac aacgcccctt
     1921 tttcaatcac atcatcttca ctaaagcaga gataatgtgc acaggtttca gcggtaatat
     1981 catagccctc ttcttgagcg tctttaattt tttgagcaac gtctgggtga ctaacgtggc
     2041 aaatatgcgc cttacagccc gtcgctttag caatttcaat aatattaatg gtgacaagca
     2101 tttctgcaat aaacggacgg gaatctaaaa atgctcgcca atctaaacgc ccttcgtttt
     2161 tcattctttg ctcttgccat ttgatggtgg aaaaatcttc gcaatgaaaa cctgcacgac
     2221 caccaaattt ttggataatt tccattgcct caacagtttg accatagtta agtgaagcat
     2281 aatcaggaga aacaggccca ataaaggact ttaacgcgac acagccttta tcatttaatt
     2341 cacttaaatg ctcaaaatta cttggtacta aaccacccca gaaacagtaa tcgacatacg
     2401 catttggcga tactttagcc attttggcat caaatatttt gccattagtt aaagcaggct
     2461 cattttgcac aggcatatca ataatggtgg tatatccgcc aactgcggcg gctgtaccgt
     2521 gtgcataatc ttcacgccat tcataacctg ggtcattaag atgggtgtga gtatctattg
     2581 cccctggaaa aacataattt cctttaacat caataacgtc ttttgcatct ggctctgtgc
     2641 cttcttctaa aatagcagca atcttacctg aattaacggc aatattaccg ttgaaaacgg
     2701 tatcggataa gactatcttc ccatttttta tgatgagatc atacatagtc aaatactcct
     2761 tatagttgtg tttgtattaa aatttatagg caatttacaa gcggtcaaat ttaaaaaaaa
     2821 ctttgcaaat cccctcattt gaatattatt cgtctaataa ttgctcagct aattcttgtt
     2881 gtaataccgc tgcttttgag aaatagtgat actcagtaaa ctctactgga gtatggctac
     2941 gaccctcttt acttggaaca aaaatcatca cagttggaat tttttgccca atttctaatg
     3001 aatcgtgccc agctccactt ggcaagcgtt tatagctgaa ttgacgagct ttagtagcct
     3061 cttctaaaat gtttaacatt ttttcagata gcttaacggg ttgaataacc aattttgtct
     3121 ctttatcaaa tctcgaacca atttttttag tttcctccgc taatgctgca tcaatttttg
     3181 ccgtaatatc ttcaatattt gccatattta aagaacgaat atcaacacta aagatcactt
     3241 tttctgccac aatgttaatc ccaccaggta gaacattcat atagccaacc gtcgctacag
     3301 tgccatcatt tttctctctt gcccagtctg caattttagc aatcacttta gttgccacat
     3361 caatggcatc taaacgcata tccattgggg ttgtgcctgc atgatctgct cgcccatgaa
     3421 ccgtaaacat atgacgatgt aagccaacaa tacccgttac taaaccaatt tcaagccctt
     3481 gattttctaa caccggtcct tgctcaatat gggtttcaat aaagtggccg attgaaccct
     3541 cttcccattt tgcattttga actttttctg gatctaaacc ataattacgc attgcttcat
     3601 aaatggaaat gccatcttta tctaagaatt ttttgcaata ctctgcatca cgaagcccta
     3661 acattgcacc cgatccaaaa taacctgtgc caaaacgcat accttcttcg tcattaaagc
     3721 ctgcaacgac aaagctacgt ttaaattttt ttccgctttc tttcaataaa cgagccgttt
     3781 ccagtgccgt aatcacgcct gcgataccat cataatcgcc accatgaagc acactgtcat
     3841 agtgagaacc agacatcaca cagggtaaat tgggctcttc gccttctaaa ataccgaaaa
     3901 tatttccagc ttcatcttct ttcacacgaa gaccaacttc cacgattaaa tctcttaaat
     3961 aatttaccgc acttctcgcc tctggtgaga atggtaaacg tgtacaacca ttacctggtg
     4021 tcgcagtaaa ttgttttaaa gtttctaaat tttgcgtaat acgctgagta attcgttcca
     4081 ttttttattc ctttttataa acgaaaatat ttcgccatac gttaattttt cttacgattt
     4141 agaataaata catcaactgg cgaatataac attgccacca acattagcac aaatcctata
     4201 tgaataaaga cattattcac ttgataaatg ccaagcataa tcaatgcaaa cgctaacata
     4261 atcacaatga aagcaagagt cattttgcct gctttagttt taaaaaaact actttctaat
     4321 gtagatttta ctgtcataaa ctcctcctaa agtgaagcaa aataagccac aacgccaatt
     4381 aataaaatag gaagtaacgt tatccaaata attgttttta acacatcgcc ttctttacct
     4441 aaaatattag ccgttgtcgt acctaaaatt atcttacttg ggctaattgc actgccaata
     4501 gcgccgcctg cagtttgggc accaagcaca gcagctgaat tcgcattcag gagtttagag
     4561 gtcgtcattt gaaagtcacc aaataaaata ttagaactca tattactacc cgtcataaaa
     4621 gtacctaaca aaccaataaa tggtgataaa atcacatacg ttttacctaa taccgcagcc
     4681 attccttcag ccaacacggc ggtttgccct gtccccccca taattttcga cataatcact
     4741 aagcctacta ccgcaatgcc tgatggcatt gtcatcgaga tagattttgc aaaaattgct
     4801 cttgttcctc ctttggctat ccagccctta cgttggtaat aaatcaagcc aataattgaa
     4861 gagataaata agaacatact tgcgtgagta aaaatggcaa taggcgaata agaggtataa
     4921 gccttattca aaaagccata gcctgttact gtttcaggga atgcaaagcc aaatttaaat
     4981 tgtgataaga actgattcac tggcgtaata acaagaattg ccaatgtcat tactgatagc
     5041 acaatatacg gaataaaggc ttgcagtaaa ttcatatttg gcaaggcttc ttccgtttcg
     5101 gtggttttag ttctatccat aattggactc tcttccacac gccaaacctc tttatacata
     5161 ctcattttgc tgataagcac aatcgctaaa attgacaaac aagcaggaat aaacgctgaa
     5221 attgttgtat ttacctggct aagtaacaat tcgccaccac cttgaatagt ggcaataatt
     5281 aaggtggcta ctaagccttt tttcagcgct ttgcctctac cataaaacca cgcaatcgct
     5341 aagcctgtaa tgacaatcca aaaccataag aatgcagaag accaaagtgc tgttaaaaag
     5401 tatttttcat taccaatttc aagcccagct gagcctgcta aagcatccca agcagccgct
     5461 aatgtaccga aagtattacc ccaagcctga ccgagcaatg gcaatactac cgcccataat
     5521 ggacgaacac caatcccaat taatagtgga gcacccaccg caacaggcac accaaaacct
     5581 gtgatacctt gtaagaaact ttcaaaaatc cagcccattg ccaataccag taataattcg
     5641 tttgggaata atttactcat ttccgaacga atgactaaaa aggcttttgc agcgtcactg
     5701 acttgataca ttaataccgc agtccaaaca attaacaaaa taattaatgc ataccaaatc
     5761 ccttttgctg attcaattgc aattaatgta acatctgctt tgtataaaaa aatgcctgaa
     5821 ataatggtaa ttaataatcc aacaggagca gcttctgttg ctccccattg gaatttaacc
     5881 attaaaataa ccaatgtgat aatcggcaat aacgccataa accacataaa aaaattcact
     5941 ggaatatcca ttttgtttaa aacaacctaa ttacaaaaaa ttgaaaaaaa tgaccgcttg
     6001 tgctagatat tttacgaata aattaccgta cctgtttcgc ctgcaatacc ttctgccgct
     6061 ttatctaaca atgtgattaa tgctctacgc ccttcgccac tttctgcgaa tttcaatgca
     6121 gcttccacct tcggcagcat tgagcctttc gcaaattgct cttcggcaat atattggcga
     6181 gcctgttcgg tgcttaattc agaaagccac tcttggttag gcttacccca gttaatggca
     6241 accttttcta ctgctgttaa gataactaaa tagtcggcat taagtttttc agccaatagc
     6301 gagctggcgt tgtctttatc aataacagca tttacaccca ctaatcgacc attttcatca
     6361 gcaaccacag gaatacctcc accgccacaa gtaattacaa tatgccctgc ttccactaat
     6421 gttttaatag tttccagctc acagatacgt tttggttttg gcgaaggcac cacaatacga
     6481 tagccacgcc cagcatcttc cattgtgcga ataccttttg cttctagctc gtcagcttct
     6541 tctttagtta aaaatctgcc tattggtttg tctggatttt ggaatgcagc atcttttgga
     6601 tcaacctcaa tttgcgacaa aattgtactg actttctgct caataccacg agtaaccaat
     6661 tcatacttaa tcgcattttg taaatcaatg ccaatgtaac cttgactcat tgcaacactg
     6721 gtgggtaatg gaatttcatc gcctgaactc ttggcgaaat catccattgc tcgctggatc
     6781 atccccactt gcggtccatt accgtgggta atcacaatat ttttaccctg ttgtaagata
     6841 tccacaatca ctttcgctgt ttttgcaacg gcttcacgct gctctactaa attattgcct
     6901 aatgcattac cgcctaaggc taatacgatg gtttgttttg acattatttc tcctttttat
     6961 ccctactacc ccatacgagc cgtatggggt tctattattt caaccacgcc gtggctcata
     7021 aagccctagg acttggttta ttcaacctag cacgccttgg ctaggttaat gcaggatttt
     7081 actcgttaaa ccctaacttt ctcgcatacg caagcacagc tttttcaaaa caagctagtg
     7141 gtgggcgtac tgtgcctgca ccaatttgac cgaaaccagc cactttgtgg gcaatacctg
     7201 tgttgattac aggggtaatg cctttttcaa ccactaatct tgcatcaaca cctaagcaag
     7261 ccccttggaa gttccagttc ggcacaatgt agttagggtt acggtcgata caaatttcca
     7321 tcatatcgtt actggtgcga agagcatctt cataaccgcc agcccccaca aaacgagtta
     7381 ccgctggtgc ggcgatcata gccaaaccac ccacacctaa ggtttcagta atggctgagt
     7441 cgccaatgtc agggcaagca tcttcgccgt catagccagt aaaatacaag ccttgtggtg
     7501 tattcacagg gccaacaaac cattcatcgc ccatacccgc aatacgaata ccaaaatgca
     7561 ccccattgcg acacattgca gtcacaaccg taccctctgt aatggttctc gccccgtcca
     7621 taatcgcttt acagcttgcc atcataatgt ttaagaagaa ttgatcggta tccgctaaaa
     7681 atttaatcac atcgtattta tcattttctg ccaaatcact cattgcagta atgcgaggag
     7741 caacttcttt gaagaaagac attgaggctg caatatttct ttggtggaac tcatccccca
     7801 tcgcaatcgc tttcgccacc agtggattga ctgccaaacc gttttccatt gaacggattg
     7861 ccttgccaag tgttggacct aatacatcac gcatccattc taaacgtttc accacttcat
     7921 ctgaatacgc accaaaacgc aataccttac cgataccttc attcattgta cagtaagcga
     7981 aattgccatc tgtagcattt tctactaccc aaacaggcat atttgctgtc gtgattccgc
     8041 ccatcggacc caccgcattc acatggtggc acggcataaa tgtaatgtcg ccgttttcta
     8101 ataaagcacg agccgaggct tcatctgtcg cccatttttc aaataatact gccccaacgc
     8161 aagaaccttg caccgtgttc ggcatatctt tgtattgaat tggtggacca gcgtgtaaga
     8221 tcactttgcc atcgtttagc tctttgatca ccgtttttgc caacacatta tcacgaataa
     8281 ttggtgtggc tgccacaacc ttagcaatca ctttacgatt tgcctcatca atatccaccg
     8341 cttcatattc gtttaagaaa ttcagtgctt tgatcaactg aatgttacca cctgctggag
     8401 gttgccagtt aaattgcact acttggcagc caaatttttc tgctacatct gcaaaacttt
     8461 tcaaaccaat attaatgatt ttaggttttt cagataataa gcgtaataac tgctcagaag
     8521 ctgggctatt ttcgccttgc actacggttt tcggctggat tggtttggtt ggctcatcaa
     8581 atggtaaacc taataaatct aatgattttt ctactgcagc tttattggtt tcgcatactt
     8641 caacgcctgc ttctaccaat ttacgcacgg tttcatcata gccttggtaa tcgctgcgag
     8701 taccgcatac ggttgccaca aaagcaacat cacggctttg agctttagct ttttgttgca
     8761 gttcttgaat ggtcggaatt aaggctgttg ccatatcttc gtgcgagccg tatcctaaca
     8821 caatgtcgaa taaaatcacg ccagtagtcg catcatcaac cgcatcacgc atagattcaa
     8881 tacgcttggc ggggtcaatc atcgggtgcg gtttgccttg agtataaata tcatcgccta
     8941 aatccaccac gatgtgtcca tcttgtttga acataaaccc atcggctttc gagccgctgc
     9001 cttcaatgcg taacgcatct ttcagcagca ttgccgcctc gccagccaac gtaccgcctg
     9061 aatagtaggc ttttaaggtt ttaccgcaag cggtcgaatt tgtcgaattt tttgcaaatg
     9121 ttggaattgg ctcttgacgc actaatgcca ccgctaaacg agccgcttcg tctagggtgt
     9181 aagcgtgata gaagttttct tcatggaatg ttggtttttc gcccaagaat aaggtaataa
     9241 caggcttgct ataacggctt aagcgagcag agattttctc acgtaccgct tttgctggtg
     9301 gtttagagat cacgatcagc acttttactt tgtcgttttg ttccatcgct tcaatagcat
     9361 ctaacattgt gataccaccg atgtcttcgt ataaatcacg cccccccgta ccaatcgcat
     9421 tttccacgcc ttcgcctaag cggtcgataa tcgtggttaa ttcttggata cccgtaccag
     9481 acgcaccaat aataccgatt gaacctggcg ttacgctgtt agtaaatgca atcggcacac
     9541 cttggataat ccctgttcca caatctggcc ccattaccac taaaccttta cgatgtgctt
     9601 tttcttttaa cgctttctca tcttccacac ttacgttatc gctgaacata aaaacgttta
     9661 atccctcatc caacgcacgg ttcgcttcca atgcagcata agcacctgga attgaaatca
     9721 ccgccaagtt tgcacctggc aaagaagcgg tcgctttatt ccaagatttt accacttccg
     9781 taccgctgtg agacgagctt gcttgagatt tctgttttaa aaatgcttct actttttcca
     9841 ttaccacatt gatcacatct tcttgatcaa catctgcgac taccaccata tcgttggcgg
     9901 tcgcttctaa taattccgcg gtgtctaagc cactttgagc aaaaatatct ttgtttgctg
     9961 gggttgccat cattacagat actttattta ccccttctaa gcctgaaatg gcattagtga
    10021 gcaacattaa cactaccgag tcttggtagc tgcctttttt tactactgtt tttaacatat
    10081 tattcttcct aattttataa gcctatacaa gctgtatagg gttctttgaa ttcagccaca
    10141 ctatggctat atgataagat tagtccgcaa aacggttttt atgatcgtag cggtcaaaat
    10201 gaatatcgtc actgattaag tattcataga ctttatccac aatttcaata ccacctgttg
    10261 cagcgtattt atcacgacgc atttcagcac gttgccctgg gtaatacacc ttatcgttac
    10321 ctggtgctgg agacatttca tttagttcat taattgattg tgccatattt tcacggaatt
    10381 gttctgcacc acagaaacaa gcaggatcaa tcacaatatg catttgacct aaacgacgac
    10441 cttccgataa atcgtggtac attgaagaaa cgtgtttgcc aaatggtacc cctaataaaa
    10501 tacctgagaa aatatctacc atcatcatta aaccataacc tttcgctcca gaaattggta
    10561 ctagagcatt cactttgttc ggatcggtta caggattgcc atcaacatca actgcccaat
    10621 ctggtggaat agattcgcca cgagaacgct tatctaaaat tttaccccaa gcttgaacgg
    10681 tcgttgccat atcaaacacg acatttctgc cttcatctgc aggtgctgca aaagaaattg
    10741 ggtttgtgcc gtaataaggt tcagaaccgc cataaggcac cgccatagga tctgattgac
    10801 aaaatgaaat agataacaag ccttctttcg ctgccatttc tgtgtaatat cctatcgcac
    10861 cactatgaga aatgttacgg atacctacaa ttgcaatgcc cgattttttc gccatttcaa
    10921 tcgctttttc catcgcaaag gttgcagcga cataaccaca gccgttatcg ccttcaaaaa
    10981 tcgctgaggc aggccctgtt tctttccatt caaatttagg attatgtgtg atgccacctt
    11041 taaaaatacg ctcgcaataa tactccatac gaacggcacc gtgagagtgg tagccacgtt
    11101 catcagacca cgtcagaatt tctgctgtaa tatctgcgtg ctgatcgttt aaacccgctt
    11161 tcattaattt agctttcatt aagcctttta attcttctct tgatagtttc attgtcaatt
    11221 cctcaacgtt aaattaaagt tctacatcac ggttacactc tttcgagtag atatagacaa
    11281 aatcctcatc acctaccgca taacaggctt gtgggcagta ggaatccata aaaacataat
    11341 catctttttt cacaggaatc cattcatcat ctaaacggta cattccttta cctgaaagaa
    11401 acagcattcc gtgttcttgg aagtgcgttt caatataacc atgcgacgca ccaggcttaa
    11461 ataacaaaat gtgcatattc atatcaaagc caaaatcagt tgcagaagga agtaaatctt
    11521 taattaaaca ggttttcatt ccttcatatt caacatagtc gatttcattc acattaccta
    11581 cataagtgat tgcctggtga ccttctaacg cggtataacg gcgacggtga atatagattt
    11641 tagtagcgtg ttccgattta ttgataaaac tcagcacttg atcggcaggc gaaaagatat
    11701 aaccaccgct ttctagaacc acatcagtat caccattttt aacagcgagc tgcccgctaa
    11761 tcaaataaac aaaaacctca ataccgttac cacctaattg tgtgcagcca ccattcgggt
    11821 gaactacagc aatataatca acaaaagatg caccgagtgc aggagaggat aaaatactaa
    11881 tatcgcagtt atggtaattt ggaatactat ttctcactaa accatctgtt tccaaaatca
    11941 caaaattatg cttacgaatt accgaacgtg tttcaagtaa tccttgtcga taacctgttt
    12001 gaccattcaa atatcccata atattctcct tctttttata taagttaagt tgaattattt
    12061 tgtactataa tatacaaaaa tagaggttca ttatgctaaa agcaacacaa atcacattaa
    12121 atacggttca agtccaagac acagctcttg taattgaagc aacccattat ctagatgata
    12181 atatcgcacc taaagcgaat cttatttatc tacacggcgg cggcctactt tatggtacaa
    12241 aagaggattt gcctcaacga catcttgaaa catttactca agctggtttg caaatttttg
    12301 caataaatta cccgcttgca ccacaggctc agattgagga aattataagc tccattcaac
    12361 aatctataaa acatttacag aaccagctac acctagaact cccttatttt ttattcggac
    12421 gttctgctgg agcttatctt gcattactga ctgctgtcag acttagccag caaatagaaa
    12481 ttgaaaagcc aaaaggtgtt atctcttatt atggttatgg ctttttgaaa gatggttggt
    12541 ttgatagccc aagcccacac tatttaaaat taccattagt cattgaaaat accgttcaat
    12601 cactaatagc cactccaagc caagaagctg atttaaacac acatttcagt tgttatgttc
    12661 acgctcgcca aactggcaag tggaaatcat taatttatca gggcagagat aaatttttct
    12721 acctcgatta cagcttacgt ttggcggaat taaatctacc gattttcgct gctcacgcca
    12781 caaacgaccc tgatgtgccg tttgcagagt ttcaagccct gtgcgaaaaa ttcaacccaa
    12841 ccaaatttgt catcgccgcc gaattacacg atttcgaccg agatgaacaa tcgaaagata
    12901 cagaggaatt gattcaagcg acgataaaat ttattcaaag cacctagcac gagaagtgct
    12961 aggttacata ataagtccct ctgggatttt acaaagtcac agcgtgtgct cagcttattg
    13021 aaccccatac ggctcgtatg gggttatgag cttatttctc caaaatcgtg ccttttctga
    13081 aacgtgcact tgatgccata tatttcatac caaagtaata aaccaatcct gttgggattg
    13141 tcgctgttag gaatgaaata tcagcattaa ataaaccgat aaccgcacca acagagatag
    13201 ctaaaatcgc agcccagttt acccctctgc gattgccgtt ttcatcataa agttcagcaa
    13261 tatctacttt ctgtttgcgt aaaatatagt aatccaccaa taacaccgca aagatcggac
    13321 cgaagaatac cgtgtaagtt aatacgaaaa tatctacgcc ttttgatgaa gcatctgagg
    13381 taattaacca agggcaagtc gcaatcgcta ataagccgat aagcactacc gaagttttgt
    13441 gcttgatttt gaatgcatcc attaacgcat atgcaggtgg tacaacgtta cttgcaaggt
    13501 tggtcgtcat ttgagcgaat aagataaata ctaatgtaat aaccactaag aatttattat
    13561 cggctgcttg tgcgaacgca ttgattgggt ttgcgatacc tgttgctgag gagatcatta
    13621 aaccgataat ccccataaat accgttgttg gtaccatcgc taagaaataa acgacaccac
    13681 gtttagtagt tgaataaccg gcttttaact cacgcacata gtcaccaaca ttaagcatta
    13741 ctaatacgtt tacgccaaag aatgctacaa tcgcactcac aaatggtaag ccccatgtac
    13801 cttctttatt aataaggttt tcttcaatac gcccaccgaa tttggtcata caaacgtaaa
    13861 acatataagc aagagaggca ataatcacta ccgcaccaat gttttccaac catttcaagc
    13921 cgtggaagcc agtggtagaa atccaaattt gcagtgcttg gaatagcaag aagtaaagca
    13981 cgatattgtc ataaccaact aataaaatag aaatttggtt gattgcagaa ccgcctaacc
    14041 aactttgcac accataccaa acaatagccg gcacaccacg cagcatagca ggtaaaatac
    14101 cgccttttgt cccaaatgca ctttttaatt gaacggcata aggcacacca cttttatagc
    14161 tcatttggtc gtttaaacat aaacaaataa tcaacaacaa tgaaccaatt agcattgcaa
    14221 caaaagcttg ggttaagttc agccctttct ctaattgtcc tgaaccgagg gcaaaggtgc
    14281 caatagatac acagccccct agccaaagaa agagataaga aagtaaatcc ataatccgct
    14341 tatttgccgg aattggttgt aagttggtat tttcagacat tgtgtctctc ctgtaataac
    14401 attgttttat ttttatgata ataaaagagc ggtcattttt tcagatattt ttgaaaaatt
    14461 gaccgcactt aaattctagc gtttgactgg acgaataaac tctccatagc ctatcgcatc
    14521 ttgtttgtac ataccgtttt ccgcaactaa acgaccacga atgaaagtat gcgttgccgc
    14581 acctttgccc tctaagccgt tgaagcaggt aacgtgcccc ttggtaaaga gtttttcttg
    14641 ttctactttc cacggttttt ctggatcaac aatcacaata tccgcatcaa aaccgatttc
    14701 aaaagcccct ttacgaccat ataaaccaaa tagttttgct ggattcacac ccattacttt
    14761 ggcaattaaa cttggactga gtttacgttg atgcacgacc atatcaaaca tcatcggcag
    14821 gaaaaactga ataccattta aaccacccca agcctcccaa atatcgtgag tgtcattatt
    14881 tttttcttca tcggctgctg gagagtgatc gctacccacg caagaaagcg taccatcaat
    14941 cacataatcc cacagttttt ccatatcctc ttttttacga agcggcggcg tacatttcgc
    15001 agggccacct ttttcaaaca caaaatcttc ggtaaaacct aaataatgtg ggcaagtttc
    15061 accagacact ggcaaacctt cgtaaatcgc atctttaacc aactgagcca ccattgggtg
    15121 tgtaacgtgg caaatatgca ctcgtccacc tgtggcacgg gacatatcaa tgatattttt
    15181 tgttgccaca aactctaccc acacatcgtg agcatctaaa aattcacgga ttttttcctg
    15241 attggttaag cctattttcg cttttgcctc tttcacacgc tcttttactt gaccatattc
    15301 ttcacagtga aagcccgata aggcattaaa cggctttaag atctctaacg ctttgcgtac
    15361 gttccctaaa ttaacagttg gaaataaatc cccatttggg caggtaaatc ctttaaaagc
    15421 agctacgccg caagcttcaa gctcaacaag atcagcggaa ttacttttaa tggagttcgg
    15481 gctatcatca taatccccca caattccgcc ccaaagggca aaatcaataa aggaatgctt
    15541 actcacgttg tcgtgtttaa gtttaaaaac gtctttgtta attaaagaag gatcattatt
    15601 aagtggcata tcaattaagg ttgtacaacc tgctgctaca gctgcacgag agcctgtttc
    15661 aaaatcttca cgataatcaa aacccggttc atttaagtga gcgtggcaat cgataatacc
    15721 cggataaacc aaatgcccct tggcatcaac cacttctttc gcttggattt caatgtccgg
    15781 cgctaaaaaa ccggcaaatt taccctcttt taccgcaata gtggcaggat aaattctatc
    15841 aggtgtaact aattgaccgt ttttaacgat taaatcatac ataataaacc ttctttttat
    15901 tgacttttaa tggtttgaaa ggaaaataaa aaatgtggaa tcgtatttca actttgcaag
    15961 tatactaatc aataaagtta ctacaaatca ataggtattt tacagaatga ccataaaaga
    16021 gcaaataata aacatcccta ttttaaaaac cactctgtac gctcaaaatg caatagaagc
    16081 tgcacctatt gtaatgcttc actctcgtta caataaaact attaatttat tgattaataa
    16141 tcagattttt acattacagc cgaaagaaag tgagctttca ccgatcagtc taatcacaga
    16201 tttctcaata acaaaatttc aacaactctc attccaacct aaccaacctt atcggctcaa
    16261 tttacattat tcaaatgatg caattttttc ttcaaaatta accgcttgca cttctttttc
    16321 accaaacaat gtggtttggt atgcaaatct tgcgcaaaaa atcttgcaaa agtcgaatgc
    16381 caaaggactg aatttattat tacaaaacag tattaacgat atactactcc gtgcattcaa
    16441 gcaatattta gttcaagctg aggatcttta tcaactaggc gaattagaaa aatcaacgga
    16501 atatttcacc aaacttattg ggcttggtat tggtctcacg ccaagtggcg atgattttct
    16561 atgcggtttt attgccacat ttcaatattt tactcaaact cagacagcat tttaccaaac
    16621 actaacccaa aaactccgac aacatttaga taatactaat gcgattagtc gccgtttttt
    16681 agattgtgca ttgcaacaac aattttccgc ccctattttg agcttcttta atcacacaca
    16741 acaacgtcaa gaggatttct gcctattagc acaacgtttt gaaaatatag ggcattcttc
    16801 cggaatggat acacttttcg ggatatacca tgcttgtaaa tggctattaa aaaaatccat
    16861 catcacctga atgtgtttgg ctttttgacg taataaagca gttgaattta aaaatgtgac
    16921 gagcaactag cgttatttag gcagaaaaat accgcttgta gtaatatgca agcggttgaa
    16981 tttagggaaa aatttgtaaa atgctttttc tatataggtt ttctgagttt aaggattaat
    17041 tctaagtagt tctatccgat ataacgcagc tttcttagct ctactgccct cttcttggta
    17101 acctaggtga gccggaatat taaactcata tacagagcct accggcataa gcaataatcc
    17161 ttgctgtaag ccggaaaaca tttctctgat aggcaaaatt actggcactt gattaaacgt
    17221 cccttcaaac acttcccctt tatcattata agaagtaaaa cgcacctcca cttcatcatt
    17281 tagtgttggt tttttgccgc tgcctgcttt aagctcctta tattgcaagc cttgcttagt
    17341 agtttgatac gcttgatttg cctgtacttt agtagataat aaacttacac tagcgacaat
    17401 gaatgccaaa cctaaagcat aaatctgctt cattctattt cccccatctt ctataaaaga
    17461 tttcatatta tcccta
//
LOCUS       DANLUT010000034        17451 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLUT010000034 DANLUT010000000
VERSION     DANLUT010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17451
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(59..619)
                     /locus_tag="PXB38_000948"
     CDS             complement(59..619)
                     /locus_tag="PXB38_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353290.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
     gene            complement(765..3707)
                     /gene="rne"
                     /locus_tag="PXB38_000949"
     CDS             complement(765..3707)
                     /gene="rne"
                     /locus_tag="PXB38_000949"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL5353291.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARN
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRDRRQRRERPNRNTKAENQERKTVQAQATPAEEKPVRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRVETQDVEAENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQELPVETVPVVETTNEGRENNRQRRLPRHLRVGNQRRR
                     DNQRNQIASPMPLTSAVASPELASGKFWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            complement(4164..5009)
                     /locus_tag="PXB38_000950"
     CDS             complement(4164..5009)
                     /locus_tag="PXB38_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL5353292.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLSPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSSHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVIASPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            5136..5960
                     /locus_tag="PXB38_000951"
     CDS             5136..5960
                     /locus_tag="PXB38_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5353293.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGTFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHSAPERDWNVEELANVALMSRSRFAAYFKQIMGVSPMDY
                     LTNWRVAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            complement(6044..7507)
                     /gene="ubiD"
                     /locus_tag="PXB38_000952"
     CDS             complement(6044..7507)
                     /gene="ubiD"
                     /locus_tag="PXB38_000952"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL5353294.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFPVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIENTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETSREWGTPIKKDDNVVKRIDEIWDSLGI"
     gene            7644..8618
                     /gene="znuA"
                     /locus_tag="PXB38_000953"
     CDS             7644..8618
                     /gene="znuA"
                     /locus_tag="PXB38_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL5353295.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPKEKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(8670..8990)
                     /locus_tag="PXB38_000954"
     CDS             complement(8670..8990)
                     /locus_tag="PXB38_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL5353296.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            9131..11494
                     /gene="rnr"
                     /locus_tag="PXB38_000955"
     CDS             9131..11494
                     /gene="rnr"
                     /locus_tag="PXB38_000955"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL5353297.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            11498..11764
                     /locus_tag="PXB38_000956"
     CDS             11498..11764
                     /locus_tag="PXB38_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353298.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEVLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            11988..12446
                     /gene="mraZ"
                     /locus_tag="PXB38_000957"
     CDS             11988..12446
                     /gene="mraZ"
                     /locus_tag="PXB38_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL5353299.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            12462..13400
                     /gene="rsmH"
                     /locus_tag="PXB38_000958"
     CDS             12462..13400
                     /gene="rsmH"
                     /locus_tag="PXB38_000958"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL5353300.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINSEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            13419..13730
                     /gene="ftsL"
                     /locus_tag="PXB38_000959"
     CDS             13419..13730
                     /gene="ftsL"
                     /locus_tag="PXB38_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL5353301.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            13734..15794
                     /locus_tag="PXB38_000960"
     CDS             13734..15794
                     /locus_tag="PXB38_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL5353302.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRSGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGLEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTARKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            15803..17293
                     /gene="murE"
                     /locus_tag="PXB38_000961"
     CDS             15803..17293
                     /gene="murE"
                     /locus_tag="PXB38_000961"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL5353303.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEAELDSKFAKFNLDRTACCKVVSVPNLPKLL
                     SEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPEFDSN
                     HRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQD
                     LIKTSPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHENYQIIGTEKLHFSDQETARKYLF"
BASE COUNT         4950 a         3622 c         3821 g         5058 t
ORIGIN      
        1 ttataatcca ggctttattt ttagcgtgtt tcgatagcta cagagaaact aaaaagcact
       61 atttgctttc aatcgctttt ttcatttctt caacttttgt ttctgtctca actttcactt
      121 ctgctgcctt ctcagctact gcctttttag cttcttctgc tttatctgct gttgcttgag
      181 tcgcatcact tgctgctgct tttagttctt ccactttagc ttcagttgtg gcttttaact
      241 cagcagcttt ctctgctact gccttttttg cctcttctgt tttatctgtt gttgcttgag
      301 ctgcatcatt tgctgctgct tttagttctt ccactttagc ttcagttgtg gtttttaact
      361 cagtggcttt ctctgccact gccttttttg cctcttctgt tttatctgct gttgcttgag
      421 ctgcatcatt tgctgccgct ttcaactctt caaccttcgc ttcagtagcc gatttaactt
      481 ctgcagcttt ttcagctaca gcttctttta cttcaaccgc tttgtctgta gttgattgcg
      541 cggcttcttt tgcctgatca caagcagcaa gtgccatagt tgtacctaac actaataatg
      601 ataaaaatga ttttttcata ccgagttcct taaataaact aaaaataacg cactttgtaa
      661 taaagtgcgt ttacttaggc agaaaaattg atagaaagtt catactttga taaaaaaatg
      721 cctattagtt ataactaata ggcatttaaa ccaattaatt gtacttaacc attggttgaa
      781 cgaggcgctg actgcacttg gctcactgcg ctggtatatc cgccaaaccc tttgccatag
      841 aaatagtatt tagagttttg ccattggcta atttcgacta cttcaagctt gtcacttggt
      901 gcagaagcaa tggtcatagc ggcttgggta tgctcaacac gagagaatgt acctaatctg
      961 ccgttaaatc gataatcgct ttcgtaagtt gattttggca cttcaatcgg gttagtaacc
     1021 tcttccacaa tcgctggtgc aaccgttgct tgcgattgga atttactgac tcgctcattt
     1081 ttctctttaa ctaaatcacg ttcagaatgc tgagcaacaa cactaccaaa tggagcaata
     1141 tgctctttta cctctactgg ttttacgtct tcagaagcaa ctttttcttc tttcggtttg
     1201 gaaagctgtt cttgcttctc cttaaccaaa tcacggttag ttgcttgtgc tacaaagcca
     1261 cctagcggac taactgtatg aagcttcttc tcttctgatt ttttctctgt ctcaacaagc
     1321 tgattttctt gctgttcaag catttgatca acagataaga atgatgcttt ttcctctact
     1381 ttgacagtag aggtaacctg aacccaaaat ttaccgctgg caagctccgg cgaagcaacc
     1441 gctgatgtca gaggcatagg cgaagctatt tgattacgtt gattatcacg acgacgttga
     1501 ttacccacac gcaaatggcg aggtaaacgg cgttggcggt tattttcacg tccttcgttc
     1561 gttgtttcta ccacaggaac tgtttcaacc ggcaactctt gagttgcaag cggttgaatt
     1621 tgctgatttt tttgcacatt ttcaacttgc ttcgcaacgg tttcttcaac tgctggcgtg
     1681 aggttttctg cttccacgtc ttgtgtttca acacgcactt ttttgcgtag gtcgcgacgt
     1741 tggcggcgtt cggtttgaac ctcacgagag ttgctacgac tctcttgctc ggttacgccg
     1801 gaaacttctt ccactaccgc tcggcgtgct tttttctcgc tacgcaccgg tttttcttcc
     1861 gccggagtag cttgcgcttg cacggtttta cgctcttggt tttccgcttt ggtattgcgg
     1921 ttcgggcgtt cacggcgttg gcgacgatca cgctggttgc gtgctttcgg cttcggtttt
     1981 tcttccactt tttcttcgct aaaccagcct ttaatggtcg caattaagcg gcttaatagc
     2041 gatggttttg gtggttcggt aggtgttggc gaaggttgga gattcagctc cgagctttgt
     2101 aacacagact ctaccgtaat caccggctcg ttacgggtaa ccagcacatc ttcttgatgg
     2161 tgatgatgtg ggtgttcttc ctcattgcga gcttcataat gcttggttaa atcgtagctt
     2221 aacgttgggg taatttcatt ttcacgcagg cgatatacgc tgaaatgcgg tgtttccata
     2281 ctttcagacg gtactacaac aatttgtaca tcgtggcgtt tttcaatgct ggaaatcgct
     2341 ttacgttttt cattgagtaa gtagctggcg atttgcaccg gcacaatggt gtgaacctgt
     2401 gcagtgtttt ctttgattgc ctcttcttct aataaacgta aaattgacag tgcgattgat
     2461 tcattatcac gtactttacc cgttccctga cagcgagggc agatatgcga tgaagcctca
     2521 cttaatgatg ggcttaaacg ctgacggctc atttctaaca aaccgaaacg ggaaatacgg
     2581 gcaaattgga ttctcgcacg gtcttggcgg gttgcctcac gaatacggtt ttccacttcg
     2641 cgttggtggc gaaccggcgt catatcgata aagtcgatca caatcaaacc gcctaagtca
     2701 cgtaaacgta actgacgagc aatttcatcg gctgcctcta agttagtatt gagtgcagtt
     2761 tcttcaatat cgccaccacg ggtcgagcgt gaagagttaa tatcaatcgc ggttaaggct
     2821 tctgtgacat caatgacgat agagccaccg gaaggtaaac gcacttcacg ttggaacgcc
     2881 gattcgattt gcgattcaat ttgatagtgg ctgaatagtg gtacttcgcc ttcgtataat
     2941 ttcacacggt tgatgaaatc cgggcgaaca aggcgaatgt ggtttttggc tttctcgaac
     3001 acttttttgt tgtcgattaa gatttcgcca atatcacggc gtagatagtc acgaattgca
     3061 cgcacaatca cgtcactttc ttggtgaatt aagaacggag cagggcgaga ttccgccgct
     3121 tttttaatcg cttcccagtg gtgtaacaag acttttaagt cccattgtaa ctcttccggc
     3181 gatttgccga caccggcggt acgcacgatt aagccgacat cttccggcac atctaagcag
     3241 tctaatgcct ctttgagttc taaacgctca tcgccttcaa tacggcggga aataccaccg
     3301 gcacgagggt tgttcggcat taaaactaag taactgcccg caagcgaaat aaaagtggtt
     3361 aaggcagccc ctttgttgcc acgctcttct ttgctgactt gaacaatcac ttcttgccct
     3421 tcttgaataa tatctttgat attcgggcga ccgttaaaca catagtctga cgggaagtat
     3481 tctcgggaaa tttcttttaa aggtaggaag ccgtggcgtt ctgcaccgta atctacgaat
     3541 gcagcttcaa ggcttggttc gacacgggta attttaccct tgtagatatt ggattttttc
     3601 tgttcgtgac ccgggctttc aatgtccaag tcaaataagc gttgcccatc aacgagggca
     3661 acacgcaact cttctttttg agttgcattg attaacattc ttttcattgt gttttctcat
     3721 tattttgttt ttgtcttaca cggtcatttt gacccattaa taagggaatg gatttaatgt
     3781 ctatctcacg actgtcttca ttcccgatag tgcattgatg gttgtcttac gtttactttg
     3841 tcttgtctta aagaaactgc aaaatcaatc acttaaggct tgtttatctc tattacaagc
     3901 ggttattttt gctttatttt ttgcaatttt ctattgcttt ttcaagccaa aaataacgag
     3961 tcattatcgc attttaaccc tgaaaaaggc aaggtaattg ttgtatggta gctgttattt
     4021 gttgtggaga tgaatataat gaaaatgaat ggggtgataa ggaaaaataa tgagatttag
     4081 tgtgagtgct ggagataagc gtgaaatcca agcggttaaa tttgcaaaaa aagagctaaa
     4141 tttaaccgct tgtaaagcga atattatgct tttgccgtca tttttttcac tgcttcttca
     4201 gtggtccaga ggtcatttgc gataatacgg tagttggtta atgctgcaag gtagccgtca
     4261 ccttcaggaa tacgaggccc tgcggttgca tctttcacca ctgttacttc aaaaccttgt
     4321 tcgattaatt cacgcaagtg tgaatcaata cataagttgg cagccatacc ggctaaaatt
     4381 acttggtcga ttttacgttt gcgtaattgc agcactaagt cattggtttc cggtccaaag
     4441 attttgtgtg gagaggcgat cactgttttg ccatcaaaaa tatatggctt gtactcaggc
     4501 ataaagtctg cacctgaatt ttcaaagcct tccatggtgt attgaccttt tcttgcaaac
     4561 attccgctgt cgtgcataaa gtgttcgccc ggtgaaccaa attcccattt gtgatcggtt
     4621 gggtaatagt agtgtgacga aacaaaggtt ggcatatcta ctgcttttgc tgctttaaat
     4681 aaactttcaa tattcgctac cgtgttgttc tctttgattg aatcacctaa cacgccccac
     4741 atcacgcctt tcgggcttag gaaatcaatt tgtggatcaa ctaccactaa tgccacacgt
     4801 tttggatcaa tagtcattcc atggcgtttt aaaccgtatt gttccggctc ggcataaggt
     4861 gatttttctg cactggcttg ttttgcattt gctgttgatg caatacctaa tgcacctaat
     4921 acactggctg ccattgcaat acgagagccg tggttaaggg cttgacggcg ttcttggttg
     4981 atttcttcaa attgttcctg tgacatcatt ttatcctcat taatagatat acaaattgta
     5041 atgataactt gcgttaccga acgggttgct attataatga ctcccttccg cttgttttaa
     5101 ccgttcgtct caattgttta cccaaggagc ttaatgtgga tagtttgact catcttttta
     5161 cccaatttca gtttcgtacg gacttatttc atctaggtca gttgtgccaa atcgggactt
     5221 ttaatgaaga gaataaaggc tatttacatt ttgttcgcca aggacgtttt attttaaatc
     5281 aggctgctga acgcccgatt acgattgaac gcccagcgat tattttttca ccgaccaata
     5341 ttttgcacag tttgcacccg ttagatgata gtgggttaga tatcttctgc attaattttg
     5401 attttggcaa agggattcgc aacccattaa cgcatacctt gcacaatatt gtgatcttag
     5461 agttggcaca gtatccggaa ttgggggtat tagccgatca aatttttagt gaagtaaatc
     5521 agaaagggtg tggttatcag gcaatgatcc accatttatg tgcctatttt accttgaagg
     5581 ttgctcgtca atgtttagaa aaagggtata ttcaaacagg tttgttaaaa ggcttggcag
     5641 ataagcaact ggggaaagtg ctgttagcta ttcacagtgc accggaacga gattggaatg
     5701 tagaggagtt ggcaaatgtg gcattaatgt ctcgctcacg ctttgctgct tattttaaac
     5761 aaattatggg ggtttcaccg atggattatc tcactaactg gcgagtagcg gttgcccagc
     5821 atttattaca aaaagggata ccggtagcat tggtggcaga gcaagtcggt tatagccata
     5881 atgctgctct cagccgtgtc tttatgcggg aattagggct ttcgcctacc gagtggttag
     5941 ctcaaaataa agaatcgtaa cctgattggc aataaagagc agaatggtaa aaatatcaga
     6001 aatttaaccg cttgttatgt tgcacaagcg gttaaatgtt gccttaaatg ccaagagaat
     6061 cccaaatttc atcaatgcgt ttcaccacat tgtcatcttt tttgattggc gttccccact
     6121 ctcttgaggt ttcacccgcc catttattgg tggcatcaat ccccattttt gagccaagtc
     6181 cggcaatcgg tgaggcaaaa tccagatagt caataggggt attttcgatg agtgtggtat
     6241 ctcgtgccgg atcgcaccta gtagtaatcg cccaaatcac gtctttccaa tctcgggcat
     6301 tcacatcatc atcgcacaca atcacaaact tggtgtacat aaattgacgt aggaacgacc
     6361 aaacccccat catcacccgt ttggcgtgtc cggcatattg ttttttcatt gtcaccaccg
     6421 ctaaacggta agaacagcct tcaggtggca agtagaaatc gacaatttcc ggaaactgtt
     6481 tttgcaaaat cggaataaag acttcgttta acgcctcgcc taacactgcc ggttcatcag
     6541 gtggtctgcc ggtgtaagtg gagtgataaa tcgcatcttt tcgcatagta atatgggtaa
     6601 cggtaaatac cggaaaatac tcttgctcgt tgtagtagcc ggtgtgatcg ccataagggc
     6661 cttccaatgc ggtttcttcc agatcgatat agccctccag cacaatttcg ctacttgccg
     6721 gcacttctaa ctcattggaa atagatttga ccacttcggt tttatgccct cgcaacagcc
     6781 ctgcgaacgc atattccgaa agcgtatccg gcacaggggt gactgccgct aaaatagtgg
     6841 ctggatctgc accaatcgca accgacaccg gaaacggttt acccgggttt tcggctttcc
     6901 actcttggaa gtccaacgca ccaccacggt gggaaagcca acgcataatc agtttgtttt
     6961 tgccgataag ttgctgacga taaatgccta aattctggcg ttttttgtaa ggcccttgcg
     7021 taatcgtcag cccccaagtg accagcggag cgacatcacc cggccaacag tgcataatcg
     7081 gtaatttgta gagatcaacc tcatcacccg aaatcaccac ttgctgacaa tcggctttgc
     7141 tcagtacctt aggcggcata tttaaaattt gcttccattg tggcagttgc ccgatcaaat
     7201 ctttaaaccc tttcggtggt tcaggctctt ttaaaaaggc aagtaacttg cccagctcac
     7261 gcagagcttt ggtatcttct tgccccattc ccagagctac ccgtttgggc gtgccgaata
     7321 aattacacaa caccgacatt tgatagcctt tcgggttttc aaacagtaat gccggcccgc
     7381 ctttgcgtaa ggtgcggtcg gcgatttctg tcatttctaa ataaggatcg atttcttgct
     7441 gaatacggac taattcaccc tgagactcaa ggaaatcgag aaattcacgg agatttttat
     7501 acttcatagc ggtcatattt ttcgattttt ttgcaagtat atagaaaaac gtaaatgaaa
     7561 aatacccata aaaaatttat agaaattttg ttttattttg ttagaatagc tcggttcaaa
     7621 ttaaatgcca taaggggaat tttatgttta aaagaacatt aatcggtcta gccgtgttag
     7681 gtgcaagtgt tgctcaagcg gatgtattaa ccagtattaa gcctttaggc tttattgcca
     7741 gtgccattac cgaaggggta actgaaacta aagtattatt accggtaact gcctctccac
     7801 acgattacag cttaaaacct tcagatgtga ctcaattaca atctgctcaa ttagtggttt
     7861 gggtgggtga cggcttggaa ggctttttag aaaaaagtat tgaaaaactg ccgaaagaaa
     7921 aagtattaac ccttgaagat gttgatgcga ttgatgatat tgtcgataaa gcaagcaaaa
     7981 aagaagataa agacgatgat cacgatcata aacatgaaca taagcacgaa cacaagcacg
     8041 agcataaaca cgaagggcat aatcacgaag gacataacca cgatcatcac ggacatagcc
     8101 acgatgaaga ttggcatatt tggctctcaa gcgaggcaag tgagctggca gcagagcaaa
     8161 ttgcggcacg tttaagcgaa caaatgcctg aacacaaagc gaaaattgcg gaaaatcttg
     8221 caaaatttaa agcaaattta accgctaaaa aagccgaaat tgcgaaacaa ttagagccgg
     8281 taaaagccaa aggttactac acattccacg atgcttacgg ctattttgaa agagaatatg
     8341 gtttaaattc attgggttca tttaccatta acccaactgt tgccccgggt gcaaaaacac
     8401 ttacagcaat caagaaaaac attgcgaaaa acaaagcaca atgtttattt gccgagccgc
     8461 aatttacgcc gaaagtaatt gaaaccttag caaaagaaac taaagtaaat gttggccaat
     8521 tagacccact cggtgcaaaa gttcagttaa gtgcgactgc ttaccctgaa tttttacaag
     8581 ttttggctga cgaatttagc caatgtttaa caaaataagt taaaaatccc ccatttaaat
     8641 ataaatgggg gattttgcga ttacatcact taagcttttt ttaagaattc tgatttcaac
     8701 ataattttac cgcaatcgac attatggtca ccttgagcta aacggattcc tttgaatttt
     8761 gtaccttttt tcagtacttc agacgagcct tttaatttta aatctttgat taataataca
     8821 tcgtccccgt cagataataa attgccatta ctgtctttta caattagcac atcatcatct
     8881 tgatccgttt cttcgcccgt ccattcatac gcacaatccg ggcaaacaaa ttgaattgag
     8941 tcgtggtaag tattttcgct tttacattca gggcaggttg ggtaaatcat tttaattcct
     9001 caaattaata aagaaccaga ttatataccg aaatccagca aaacgctaag cggtcatatt
     9061 ttgccgattt tttaccaatc gagctaaaag tcagttagaa tagccttaat tacacaaaaa
     9121 ggaggatact atgatagtcg atccgaatta tcagcaagaa ttagaaaaat acgaaaatcc
     9181 ggtaccaagc cgagagttta ttttaaatac aattcgtgaa cataacgccc caatgagccg
     9241 tgatgaatta ttgtcggctt ttcatattga cgatgaagaa cgaatggaag gcattcgccg
     9301 ccgtctgcgt gcaatggaaa atgacggtga attggtgttc accaaaggca aacgctatgc
     9361 gttgccggaa aagatggatt taatcaaagg tacagttatc ggccatcgtg acggttacgg
     9421 ttttttgcaa gtggaaggac acgaaaaagg ggcgactaaa agcgaagatt ggtttattcc
     9481 caacgcccaa atggtaaagg taatgcacgg tgactttgtg ctggcacaac caaacggcac
     9541 agaccgcaga ggtcggaaag aagtccgcat tgtgcgagtg ttggaggccc gtaagaaaca
     9601 gattgtcggg cgttttttcc ttgaaagcgg tatcggtttt gttgtgcctg atgacagccg
     9661 cgttaaccaa gatattctca ttccggatga acaccgtatg ggggcgagaa tggggcaagt
     9721 tgtggtggtg gaattacagg aaagaaaagc gagttttagc cgcccggtgg gaatcattac
     9781 tgaaattcta ggcgataatt tagcgccggg aatggaaatt gaaattgccc tacgcaatca
     9841 cgatattccg cacatttggc cggaaggggt agaaaaacaa atccgccaat ttagtagcga
     9901 agaagtgccg gaagaagcca agcaagggcg ggtggatttg cgagatctgc cactgattac
     9961 cattgacggc gaagatgccc gagatttcga tgatgctgta tttgccaaaa aagagggcaa
    10021 cggctggcgg ttatgggtgg cgattgccga tgtaagttat tatgttcgcc caaaaaccgc
    10081 attagatttg gaagccctaa atcgtggtaa ctcggtctat ttcccgaatc gggttgtgcc
    10141 aatgttgccg gaagtgcttt ccaatggctt gtgttcactc aatccacagg ttgacaggct
    10201 ctgcttggtg gcggaaatgt cggtttccag caaaggggaa ttacaagatt atcaattcta
    10261 cgaagcggta atgaactctc acgcccgttt aacttacact aaagtgtgga aaatgttgga
    10321 aggtgatgaa gccttgcgtg aacgctatgc tccattagtg ccgcatattg aagaactcta
    10381 tgcaatgttc caaaccttaa tgaaagctcg ccataaacga ggggcgattg aatttgaaac
    10441 cattgaaaat caatttattt tcaatccgca agggcgaatt gagcgaattg agccgttaat
    10501 ccgcaacgat gctcataaat tgattgaaga atgtatgatt ttagccaata ttgctgccgc
    10561 tcgttttgtg gaaaaagcga acgaaccggc gttatatcgg attcacgata agccgagtga
    10621 agaaaaattg ctcagtttta aatcctttgt gcgtgagtgt ggcttaacct gggacgtagg
    10681 cttagatcca accccaaaag attacggtgt actactggag caaattgccg aacgtgccga
    10741 taaagagttg attcaaacga tgttgctccg ctcgctgaaa caagcagtgt atgcggcgga
    10801 taatatcggg catttcggct tggcattaac cgaatatgct cattttacct cgccgattcg
    10861 ccgttacccg gatttactgt tacaccgtgc aattaaatat ctgatcgaaa aaggcaaagg
    10921 caacactcgc tactataccg atggcggtgg ttatcactac aagttagatg atatggacga
    10981 attcggcgat aaatgttctg ccaccgaacg ccgagctgat gaggcaaccc gagaagtggc
    11041 agattggctg aaatgcgaat ttatgcaaga tcatcttggc gaagagtttg atggcgtgat
    11101 ttcgagtgtt accggctttg gcttatttgt aaaactcaat gagcttttaa ttgacggatt
    11161 ggttcatatt tcaacgctgg ataatgatta ttaccactat gatgcggacc gacaacgttt
    11221 aatcggtggc agtgggatca tctatcgttt aggcgatgca gttagagtaa aagtaatcaa
    11281 tgtgaattta gacgagaaaa aaattgattt tgagttactc accggtaata agaaaaccgg
    11341 caaaaccgcc aagaaaaaag caaaagcgac agaggttcct gttttcaaag agcctaaaac
    11401 ggtaaaaaaa gccaaaaaag tcgctgagaa aaaaccggca aaatctgcaa aaaaacggac
    11461 aaaaacgacc gctagtaaat caaggaaaaa atagcaaatg gattacaaaa aacaaatttt
    11521 attcagcctt ttatttgctt tagtaattgc aataataagc tattttttgt ttacctatat
    11581 cccgtttgat tgtagcgatc tgagcaaact caacgattca caacgtttag agtgccgaac
    11641 tgccgaagtt ctgggcgttt attactggct gccgcacact accacgctgt ttttcggctc
    11701 ggtgttatta tattgggcgg tttatggcat gatttcatta gtgcaagcag tgctcaaacg
    11761 ctaacaagcg gttttgtttt tgcaaaaagt tgcaaatctc atctgaataa tccttccaag
    11821 atcaaaggtc tatcaaaaaa gatagacctt tattgtgtaa ataaactaaa actccttgat
    11881 agatgtatca catatctata aaattccagc aattaagtgg ggaaaaagtg gtaaattgtg
    11941 gaacttttcc ttaaatttaa cctcatttaa aaaggtaaat cagtaaaatg tttcgtggtg
    12001 caagttcaat cagcattgat agcaaagggc ggatcgctat tccgacccgt tatcgtgccg
    12061 agctattgga aaaacatcac gggatcttag tttgcactgt ggatatccgc cagccttgtt
    12121 tgttgcttta cccacttcac gaatgggaaa tggttgaaca gaaattgttg gcactatcta
    12181 attttgaccc tgttcaacgc cgtattcagc gagtaatgca aggctttgct accgaatgtg
    12241 aaatggattc ggcagggcga atactgctta gccctacact tcgccaacac gcacaattag
    12301 agcaacaaat tatgctggtt ggacaattaa acaaatttga aatttggcaa gataaacaat
    12361 ggcaagcaca aattgccgaa gatcttgctt ttggcagttc ggcagaaatt ttagactgcg
    12421 aagcattgaa aaacctgtct ctctagtaat tggaaattga gatgagcgag aacccaaaac
    12481 atattacagt attattgcac gaagcggttg acggcttggc aattaagcct aacggtatct
    12541 atattgacgg tactttcggg cgtggcgggc attctcgctt gattttatcc aaactgggcg
    12601 aaaatgggcg attaatcgca actgatcgtg acccacgagc gatagccgaa gctcaaacga
    12661 ttagtgaccc tcgttttcaa attgaacata cggcattttc tgccattccc gaactgtgtg
    12721 aacgaatggg gttggtgggc aaaattgacg gtattttatt ggatttaggt gtgtcttccc
    12781 cgcagcttga cgaagccgaa cgaggcttta gttttatgcg tgacgggccg cttgatatgc
    12841 gaatggatac caccaaaggc ttatcggcag ccgagtggct tgcccaagtt tcggcagaag
    12901 atttagcttg ggtattgaaa gaatttggcg aagagcgttt tgccaaacgg attgcacaag
    12961 cggtcgtttc ttacaataaa tctgcaaatg aaaaaatcag ccgcactttg cagcttgcgc
    13021 aaattattgc ggatgcggtg ccgtttaaag ataagcataa acaccctgca acccgttcgt
    13081 tccaagcaat tcgcattttt atcaatagtg aattagacga gctggaaaaa gctttaaatt
    13141 ccgcattaac ggtgttagcc cctgaagggc gtttgtcgat tatcagcttt cattctctag
    13201 aagaccgaat ggtgaaacag tttgtgcgta agcatagtaa aggaatggac gtaccccgtg
    13261 gtttaccgat tttagaagca gagctaacca aaaatattcc gctgaaaacc attggcaaag
    13321 cgattatgcc gagcgaagcc gaaattgaag caaatgcccg ctcacgcagt gcggtattgc
    13381 ggattgccga aaaacgctaa cagtaaatag ggaagaatat gtcgaacgaa cgttatccgt
    13441 tacatcaaat catcattgat gatatcttta gccataacaa agtggctctt ttattgttga
    13501 ttggtgtagt gatttcagca gtggctacga tttggataac ccaccagact cgtttatcgg
    13561 tgagcgaaca agggcaactg attcaagcaa accaaaagtt ggaaagccaa tatactaatc
    13621 tgcaattaga agaaaacagc agaagcagtc gggcaagagt tgatgccgcc gctaaatcgt
    13681 tcggattaca gccgattaaa aaagagcaag aaattatttt agttgaataa aaaatggtta
    13741 aatcagttaa attaaaacgt aagcaagaag ctcctgtcgc aaaagcagag cctcaacaag
    13801 cagaaggtaa aaaaacaccg agttttttac ctactcgctt tagagtggtt gtgtttttta
    13861 tgctattaat ggttggtggc ttactagcac aaaccgccta tattcagctt tttgactctg
    13921 aaagattaat taaagaggct aataaccgct cacttcgtac taaagaactc caatttaccc
    13981 gtggacgtat tttagatcgt agcgggcgtt ttctctctat tagtgtgcca atgtactcat
    14041 taacacttga cccgagagaa tactttgata ctaagctgcg tcgttctaac gaaagctggc
    14101 gtgccttagc gattgaaatg gaaacatcaa aaggtaaaat tgaggcaaac gttaataaat
    14161 ttattgaaaa gaaaaatttt tcaaaagaaa aagtagattt tgatccacgt tctattttaa
    14221 atactaaaag tgaaggttat tggactcagc ttgcccaagt tacaggtttg gattacaaca
    14281 gtttaataga aaaagtacgg aataacccta gctcggtttt tttacgttta gataacgaaa
    14341 atttagtaag agaacgccag aaattccaag cgttaagcaa agaaatcggc cgttcctata
    14401 atgacataat ggacgagctt tatagcaaaa accgccagcg attcctttac ttatcccgtc
    14461 atcaatctga agcgatcagc gaatatgcaa aagaactaga tattgatgca ttagtgatta
    14521 aagtcgaatc acgccgtttt tacccgctgg cagaagaatc ttcacagttg atcggtttta
    14581 ctgataaaga tgatatgcac ggtttggaag ggctggagcg tagttttgat tccttactta
    14641 tcggcaaaaa cggtaaacaa attatccgaa aagatgccaa aggcaatatt gtggaaaata
    14701 tccgttcgga gaaacagtac gatccgcaag atgttatgtt aagcattgat gaagaattgc
    14761 agtctatggt gtacggtgaa atcaaaaaag cggtacagga aaataatgcg gaatcaggca
    14821 ctgcggtttt ggttgatgtg caaaccggcg aaattttggc aatggcaaat gccccttcat
    14881 tcaacccaaa caaacgggat agttttaaac ctgaattaat gcgtaaccgt gctattaccg
    14941 acacttttga accgggttca acggtgaaac cttttaccgt attaaccgca ttacaaaatg
    15001 gggtaactta tcgtgatgaa gttattggca ctcgcccatt tgtcgtcaat ggacacacaa
    15061 ttaaagacgt tgctccaagg gacagcctta cgcttaccgg catcttgcaa aaatccagta
    15121 acatcggggt cagtaaatta gctctcagaa tgccggcaaa tgcgttagtg gatacttaca
    15181 cgaaagtcgg tttcggtaaa gacaccggtt taggcttggg tgaacaacga ggtacgaacg
    15241 gtgatcgcaa acgctgggcg gatattgaac gtgctaccct ttcctatgga tacggtttaa
    15301 atgtgacccc attacaactt gcccgtgctt atgcgacttt aggaagtttc gggctgtatc
    15361 gcccactttc gattaccaag gtcgatccgc cggtgattgg cgaacgggtg ctaccggaaa
    15421 aaaccacccg agatgtcgtg catatgatgg aaagcgttgc ggctaaaggc gaaggcggac
    15481 accgtgcagc ggtggacggc taccgtgtag ccatcaaaac cggtacagca cgcaaattag
    15541 aaaaaggcaa atatgttgaa aaatatattg cttataccgc agggcttgcc ccggcaagcg
    15601 atcctcgctt tgcattagtg gtattaatca acgaacctaa agcaggcaac tattatggtg
    15661 gctttgtttc tgcaccactg ttctcacgca ttatgggtta caccttaaaa caacgtaata
    15721 ttaagccgga taacttaacg gaaaataccc aaagtgccgt gcgtgaaatt aaattagaac
    15781 gccctatcaa ttaaggttag ctatgaaacg tttactccct tttctgacag aacttgatgc
    15841 ttgggtggaa gaactcaccg agctaaaaca aatgacactt gatagtcgcc aagttcaagc
    15901 cggtgatctc tttgttgctt taaaaggaca tcaagtcgat ggcagaaaat ttattccgaa
    15961 tgcgatagaa caaggagcag caattatttt ggctgaggct gatgaagatc agccggaagc
    16021 tgagcttgat tcaaaatttg caaaatttaa tctagatcgt accgcttgtt gcaaggttgt
    16081 ttcagtaccg aatttgccaa aattgctatc tgaaattgca ggggcttttt accataaccc
    16141 gtcacacaag ctgactttag caggcattac cggtacgaac ggtaaaacga ctaccgctca
    16201 attattggca caatggcata atttattggg tggaaaatcg gcagttatgg gtactatcgg
    16261 caacggtttg tacggacaag tgcaagaagc ggtaaatacc accggctccg ccattgaaat
    16321 tcagcgtaat cttgccaact ttgttgaact tggcgcggat ttttgtgcga tggaagtcag
    16381 ctctcacggt ttggctcaat ttagagcgga agccttagat tttgatttgg cgatctttac
    16441 gaatttaagc cgagatcatc tcgattacca caacacgatg gaagagtatg cccaagccaa
    16501 attccgtctc ttcaacgaat taagcactaa agctcaggtg attaacgccg atgatgaaat
    16561 cgggcgtgaa tggctgacac aattaccgaa tgcggttgcg gtaagtactg atccggagtt
    16621 tgatagcaat catcgctttg tcaaagccac ggcagtgaaa tttaccctgc aaggggcaag
    16681 cattgcgttt aaatcaagct ggggaaatgg agaattacat agccgtttaa tcggggcttt
    16741 caatgtaaat aatctgctta ccgcctttgc cggactttta gctcttggct ttgatattca
    16801 agatctgatt aaaacttcac cgaatttagt tggcgtagca ggcagaatgg aatgtatcac
    16861 cgctccaaat aaaccaatgg tgattgtgga ctatgctcac accccggatg ctctcgaaaa
    16921 agccctacaa gcggctcgtt tacattgcga aggcgaactt tggtgcattt tcggctgtgg
    16981 cggcgaccgt gacgccggca aacgcccatt aatggcgacg attgccgaga aattaaccga
    17041 taaagtgatt gctacagacg acaaccctcg caccgaagat aatcaaaaga ttatggcaga
    17101 tattgtgaaa ggttttagta aaccccaaca aattatccac aatcgtgaag aggcaattaa
    17161 aaccgccatt gagcaagcta aagccacaga tgtgattcta atcgcaggca aaggtcacga
    17221 aaattatcag attattggca cagagaagtt acatttttcg gatcaggaaa cggcaaggaa
    17281 atatctgttt taatgtcact ttctttgctt cgccaaagaa agtaaccaaa gaaaggcgac
    17341 cctacttcac cgctgtcttc gcttggtttg aatttgctta acgaaaaaat tccaaactcg
    17401 ccgcttcgct gctcaaacaa ggaatttttc ctacaaattc aaagtcgctc a
//
LOCUS       DANLUT010000035        17303 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLUT010000035 DANLUT010000000
VERSION     DANLUT010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17303
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            67..1461
                     /gene="murF"
                     /locus_tag="PXB38_000962"
     CDS             67..1461
                     /gene="murF"
                     /locus_tag="PXB38_000962"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL5353304.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDSYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            1482..2564
                     /gene="mraY"
                     /locus_tag="PXB38_000963"
     CDS             1482..2564
                     /gene="mraY"
                     /locus_tag="PXB38_000963"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL5353305.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWP
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            2628..3929
                     /gene="murD"
                     /locus_tag="PXB38_000964"
     CDS             2628..3929
                     /gene="murD"
                     /locus_tag="PXB38_000964"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL5353306.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            3929..5107
                     /gene="ftsW"
                     /locus_tag="PXB38_000965"
     CDS             3929..5107
                     /gene="ftsW"
                     /locus_tag="PXB38_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL5353307.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            5226..6281
                     /gene="murG"
                     /locus_tag="PXB38_000966"
     CDS             5226..6281
                     /gene="murG"
                     /locus_tag="PXB38_000966"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL5353308.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAERGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMAMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            6357..7784
                     /gene="murC"
                     /locus_tag="PXB38_000967"
     CDS             6357..7784
                     /gene="murC"
                     /locus_tag="PXB38_000967"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL5353309.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSAGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            7874..8785
                     /locus_tag="PXB38_000968"
     CDS             7874..8785
                     /locus_tag="PXB38_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL5353310.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQVVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            8785..9576
                     /locus_tag="PXB38_000969"
     CDS             8785..9576
                     /locus_tag="PXB38_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL5353311.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFI
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIKEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVTIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            9599..10870
                     /gene="ftsA"
                     /locus_tag="PXB38_000970"
     CDS             9599..10870
                     /gene="ftsA"
                     /locus_tag="PXB38_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL5353312.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYYVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARIFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            10903..12150
                     /gene="ftsZ"
                     /locus_tag="PXB38_000971"
     CDS             10903..12150
                     /gene="ftsZ"
                     /locus_tag="PXB38_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL5353313.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            12182..13102
                     /gene="lpxC"
                     /locus_tag="PXB38_000972"
     CDS             12182..13102
                     /gene="lpxC"
                     /locus_tag="PXB38_000972"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL5353314.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRTV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            13275..14957
                     /gene="recN"
                     /locus_tag="PXB38_000973"
     CDS             13275..14957
                     /gene="recN"
                     /locus_tag="PXB38_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL5353315.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDAAHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQAQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(15004..15079)
                     /locus_tag="PXB38_000974"
     tRNA            complement(15004..15079)
                     /locus_tag="PXB38_000974"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15044..15046),aa:Ala,seq:ggc)
     gene            complement(15160..16599)
                     /gene="gltX"
                     /locus_tag="PXB38_000975"
     CDS             complement(15160..16599)
                     /gene="gltX"
                     /locus_tag="PXB38_000975"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL5353316.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            16774..16849
                     /locus_tag="PXB38_000976"
     tRNA            16774..16849
                     /locus_tag="PXB38_000976"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16807..16809,aa:Val,seq:tac)
     gene            16898..16973
                     /locus_tag="PXB38_000977"
     tRNA            16898..16973
                     /locus_tag="PXB38_000977"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16931..16933,aa:Val,seq:tac)
     gene            17026..17101
                     /locus_tag="PXB38_000978"
     tRNA            17026..17101
                     /locus_tag="PXB38_000978"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17059..17061,aa:Val,seq:tac)
     gene            17150..17225
                     /locus_tag="PXB38_000979"
     tRNA            17150..17225
                     /locus_tag="PXB38_000979"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17183..17185,aa:Val,seq:tac)
BASE COUNT         5152 a         3248 c         3961 g         4942 t
ORIGIN      
        1 aaagaaaagt gacagtgaca aatacaaaat gctcgtaatt aattttataa agaaaaagat
       61 aaatcaatga taaaactaac cacccaacaa atcgctgaaa tcctaaatgc caaattgatc
      121 ggcaatggcg aaactgtggt agaaaccacc agcaccgaca cccgacaagc ggttgaaaac
      181 ggcttatttt ttgcattaaa gggcgagaac tttgatgctc atcactatct tcaaaatgca
      241 gtcgcacaag gttgtgtagc ggttgtggtt gagcgtgagt gtgaaattga tgtaccacaa
      301 cttgtggtgg cagatacccg tttggcattg ggggaattgg cgaaatggtt aaaagctaag
      361 ctgaacccga aaacggtagc gatgacaggt tcttccggca aaacaaccgt caaagagatg
      421 acggcaaaaa ttctgcaaaa aatgaccgct tgcgaacagg aagtgcttta tacttttggt
      481 aacttaaaca atgacttagg tgtaccgatg accttgcttc gcttaaccga acagcataaa
      541 tatgcggtca ttgagctggg ggcaaatcat atcggtgaaa tcgcttatac caccgctatc
      601 gctcagcctg atgcctgctt ggtgaataat gtggctgcgg cgcatttaga ggggtttggt
      661 tcattagcag gcgtggcaca agccaagggc gaaatttatc gtggcttgaa agaaaatggc
      721 aaagcgattg tcaatttagc tttttattat ccgcaatggc aaaaagagat tgactcacgg
      781 gaaatgcaat ctttctctta tatcgggtca gattcggatt cttacgcaga ttactgggcg
      841 gaagatgtag aactgcattt aagcggttca cgctttacgc tacatacccc acagggcgaa
      901 attgctattg atctgcctta tttgggcaaa cataacgtga gcaatgcctt agcggcaact
      961 tcgctggcga tgtctgttgg ggcaacgcta gaagcagtta aggcagggct tgagcagcgt
     1021 tcaatggtaa aagggcgttt gtatccggtg caaattaacg accactgttt gtttattgat
     1081 gactcttaca acgccaatgt ggattcaatg aaatcggcga tttctgtttt ggaaaattat
     1141 ccggcttatc gtatttttgc agtgggtgat atggcggaat tgggtgaaga aagtagcaaa
     1201 tgccaccaag aagtagcgga ttttgccaaa aatgcagcat tagatttaat cgtgagcttt
     1261 ggaaaagaaa gtgcggtaat cagccaacag gcagaacatc attttaccga taaacagcaa
     1321 atggttgatt tcctactgcc gattattttg caaaaaatcg aacaaaaaca accgcttgta
     1381 ttattagcaa aaggctctcg tagccagaaa atggaaaccg tgatttccga attgtgtaaa
     1441 ccgtttaacc taaatttcta attattttta aggactaagc aatgttagtt tggcttgcag
     1501 aactattggt tcaatataac acagcgttta acgttgtctc ttatattact ttccgtgcca
     1561 ttatggcatt attaactgca atgggaatcg ggctttggat cgggccgaaa gtaattcgcc
     1621 gtttgcagat cttaaaattt ggtcaggaag tgcgtaatga cggaccggaa agccatttca
     1681 aaaaacgtgg tacgccaaca atgggcggag tgatgattct cgcagcgatt ggggtgagta
     1741 cattgctttg ggcagatctg cgtaattcct atgtttggtt cacgctgttt gtgctatttg
     1801 gctacggtgc agtgggcttt gttgatgatt atcgtaagat ctctcgtaaa aataccgatg
     1861 gtttgattgc ccgttggaaa tatttttggt tatctgctat cgcattagtg gcggtgtttg
     1921 gtatgtatgc ggtgggtaaa gataccgctg caacacaatt agtcgtgccg ttttttaaag
     1981 atgtgatgcc gcaactcggt ttattttata ttgtgttatc ctatttcgtg attgtcggca
     2041 ccagtaatgc ggtaaaccta acggacggct tagacgggct tgcgattgtg ccaactatta
     2101 tggtcgcatc tgcctttgcg ttaattgcgt gggcaaccgg taactttaat tttgcacaat
     2161 atttacatat tccttttatt ccaaatgccg gtgaattggt tattttatgt actgcgattg
     2221 tgggagcagg tttagggttc ttatggtata acacctaccc tgcacaggtg tttatgggcg
     2281 atgttggctc actttcgctc ggcggtgcat taggcgtgat tgcagtatta gttcgccaag
     2341 aattattatt ggtggtaatg ggcggtgtat ttgtggttga agccctctcg gtgattttac
     2401 aagtaggttc atacaaatta cgccaaaaac gtattttccg aatggctcca attcaccacc
     2461 attttgaact caaaggctgg cctgaaccac gggttatcgt gcgtttctgg attatcacgc
     2521 taatgctggt tttagtcggc ttagtaacat tgaaattacg ttaattgatt gaataaggtg
     2581 cattgagata atgtacctta tgttattttt aaattacaga ataaattatg caaaaacaat
     2641 acgaaaacaa aaccgttact attatcggct taggtacaac agggttatct tgtgtggatt
     2701 tctttaagaa aaaaaatgcc aatatccaag tgattgacac ccgagcaaac ccagccggag
     2761 cggataaatt ggacgtaact attccgttgc ataccggtgg gttaaacagt gaatggttgc
     2821 tgaaatctga tcttattgta attagcccag gtttagccgt tgccacacct gaaattcagc
     2881 aagcgattca agctggtgtt gaaatagtcg gtgatgttga actgttttgt cgggaagcga
     2941 aagctccgat tattgcgatc accggttcaa acggcaaaag taccgtaacg actttaacta
     3001 ccgaaatggc gaagcaagcg gggattaaag tgggaatggg tggcaacatc ggtgtgccgg
     3061 tattaagttt gctggagggc gattatgacc tttttgtgct ggagctatcc agcttccagc
     3121 ttgagacaac ttattcactg aaagcaaaag ctgccactgt tttaaatatt agcgaagatc
     3181 atatggatcg ctacgattcg attgccgact atcgccaagc gaaattgcgg atttacgata
     3241 atgcggaaaa tatcatcgta aacggtgaag atgcccaaac ttacccgata caagcggtca
     3301 aaaaagtgat tcgttttgca gaacaaaatg cggaatatag cctacgcaat cagatgcttt
     3361 attcaggcga tgatgcaatt atccaaacta aacagatgct gattagcggc cgtcataatg
     3421 agatgaatgc gttagcggcg atggcattag cagaagcggc gaatgttcct cgtgaaggca
     3481 ttgtgaaagc tttgcaaatt tatggtggtt tgccacaccg tttccaagcg gtggcaacca
     3541 atgatggcgt gcgttgggtc aatgattcca aagcgaccaa tgtgggtagc acggtagcgg
     3601 cattaaacgg cttgaatatt gccggtacac tttatttact tttaggtggt gacggcaagg
     3661 ctgcggattt ttccgaactc aaaccattaa ttaataagcc aaatattgtc tgctattgtt
     3721 tcgggcaaga tggagcggca ttggcagaat taagcgaaca aagtgtgttg gttgaaacga
     3781 tgcagcaagc aattgaagca atccgcccac aactgaaaaa aggcgatatg gtactgcttt
     3841 ctccggcttg tgccagttta gatcagttta aaaactttga gcaacgtggc gaggtattta
     3901 tggcattagc acaaggacag cacgcataat gttagaaaga attaagtcgg aatgggataa
     3961 atgggtcaga ttaacccctt ctaattcact ttatgacaga actctaattt ggctattttt
     4021 aggcctgcta attatcggtt ttgtgatggt aacatctgct tcactcccag ttagcacaag
     4081 gttgaataac gatccatttt attttgcgat tcgagacggg ctgtatatta ttgcttcaat
     4141 tatcttttgt tatgtttttg tacaaatccc aattgaaaaa tgggaaaagc ataacttggc
     4201 actgtttttt atttcaatcg gttttttaat cgccgtactc attttcggcc gctcaattaa
     4261 tggtgcagtg cgttggattc cgttgggtat tctcaacttt cagccggcag aattagccaa
     4321 attagcggtc atttgctatt ttgccagttt ctatgtacgt aaatatgatg aaattcgtaa
     4381 agaaaaagcc agtttctggc gaccggcagt gattttattc ttattcggct tcttgctgat
     4441 tttgcagccg gatttaggta gtacctttgt attatttgtt ctcactttct caatgctttt
     4501 cattgtgggg gcaaaaatta tgcaatttat gtttttaggc gtggtgggaa cggtgttatt
     4561 tgcggtgttg attttaacct cggaataccg tttaaaacgt gttacctcct ttatggatcc
     4621 gtttgctgat gcttatggcg acggtttcca gctctcgaac tcacaaatgg catttggaca
     4681 aggtgaattt tggggacaag gtttaggtaa ttcggtacaa aagctagaat atttgccaga
     4741 ggcacatact gactttgtaa tggcggttat tggtgaagaa tttggtttct ttggtattgc
     4801 ttgcatcgta cttttactta ttctattaac ggtgagagcc ttaaaaatca gtaaagaatc
     4861 tttggtgctg gaagagcgtt ttaaaggcta tatggcattt gggattgcga tttgggtttt
     4921 cctacaaggc ttcgtaaact taggggtggc atcaggtttg ctgccaacga agggcttaac
     4981 cttcccatta gtgagttatg gtggttcgag tttggtaatt atgtcgattg cgattgcagt
     5041 tttgctacga attgaccacg aaaaccgtgc cgagcgaatc gggcacgcaa aaattaaaac
     5101 catctagccg agcggtctgc aacgttacaa tttgcaaaat tttacaaaaa tgagaccgct
     5161 tgtattagct ggaaagcata aaaattcagt aaaatagcac gttttagaat aaaaaagagt
     5221 tgaaaatggc gaagaaatta ttagtaatgg caggtggaac aggggggcac gttttccctg
     5281 caattgccgt agctcgagag ctacaaaaac aaggctggca aatccgctgg ctggggacga
     5341 aagaccgaat ggaagccact cttgtgccga aacacggtat tgagattgat tttattgaaa
     5401 tctcaggctt gcggggtaaa ggcgttgcag cattgttgaa agcaccgttt gctattttta
     5461 aagcggtgat gcaagcccgc aaaatcatta aaaattatca gcctgatgcg gtgttgggaa
     5521 tgggcggtta tgtgtccggt ccgggcggta ttgcggctaa attatgtggc gtgccggtga
     5581 ttttacacga gcaaaacgca gttgccggcc taaccaatgt gtggctatcc aaaattgccc
     5641 gcaaggtgtt acaggctttc cctactgctt ttaaagaggc cgaagtagta ggtaatcctg
     5701 tacgtgaaga tttatctgct cttccgctgc cgaatgaacg tttcgccgaa cgaggctacc
     5761 cgattaacat tttagtaatg ggtggcagcc aaggggcaag agtgatcaac caaaccgtgc
     5821 cggaagtggc aaaagtgttg ggtaataatg tgtttatcag ccaccaagtc ggtaaaggta
     5881 atttagccgg tatcgaagaa gtctatcaac aaaccggcaa tgggattgct tccgagttta
     5941 ttgatgatat gaaagccgcg tatgagtggg cagatttggt gatttgtcgt tccggtgcgt
     6001 taacggtgtg tgaaattgcc gccgtaggcc tgcccgctgt gtttgtgccg ttccaacata
     6061 aagacaggca acaattttta aacgctaact atttggcggc agatggagca gcagtgatta
     6121 tcgaacagag cgatttcact ccaaaggcat tacagcaagc cttagaaccc ttaattgcca
     6181 atcgccaact cttattggat atggcaatgc gagccagagc aaaatccacc ccaatggcag
     6241 caaaacgtgt agcggaagtg attattcaag aagcgaatta acttactaca agcggtcgtt
     6301 tttggtaaaa attttgcaaa atgtaaccgc ttgcgaatag attaaaagga caataaatga
     6361 aaaatttcca agataaagtc aaaaaattag tgcctgaaat gcgtcgtgtc agccaaattc
     6421 attttatcgg gattggcgga gccggtatga gcggcattgc ggaagtgtta ttaaacgagg
     6481 gataccaaat ttcaggttcg gatattgcag acagagcggt tacacaacgt ctatccgcag
     6541 ccggagcgaa agtctttatc ggacaccaag cagaaaatat tgctggggcg agtgtggtgg
     6601 tggtttctac tgcgattgat gaaaccaacc ctgaaattat tgccgctcga gaagctcgaa
     6661 ttccggtgat tcgccgagca gaaatgcttg ccgaaattat gcgttttcgc cacggcattg
     6721 cgattgcagg cacacacggt aaaaccacta caaccgcaat gatttcaatg atctacaccg
     6781 aagcaaaatt agatccgact ttcgtgaatg gcggtttggt aaaatctgcc ggcaaaaatg
     6841 ctcatttggg ggcgagccgt tatttaattg ccgaagccga tgagagtgat gcttctttct
     6901 tgcacttgca gccaatggtg tcggtagtaa ccaacattga gcctgaccat atggacacct
     6961 atggtggcga ttttgagaaa atgaaagaga cttacgtacg atttttgcgt aacttacctt
     7021 tctacggctt agcggtaatg tgtgccgatg atgaaacggt aatggaaatt gctcctcgtg
     7081 tcggcagaca agtgattacc tatggcttta gcgaaaatgc ggattaccga attgaagatt
     7141 accagcaaac cggcttccaa gagcattaca ccgtagtttg cccaagcggt gaacgaattg
     7201 atgtgctgtt gaatgtgccg ggtatgcaca atgccttaaa tgcaaccgct gcgttagcgg
     7261 tggcaaaaga agaagggatt ggcaatgagg cgattttagc tgctttagct gatttccaag
     7321 gggcaggacg ccgctttgac caattaggtt catttattcg cccgaacggc aaaattatgt
     7381 tagttgatga ctacggccac cacccaactg aagttgatgt aaccattcaa gccgctcgtt
     7441 caggctggga aggtaaacgt gttgtgatga ttttccaacc gcaccgctat tctcgtaccc
     7501 gtgatttatt cgatgaattt gtacaagtac tgtctaaagt cgatgccttg attttattgg
     7561 atgtgtatgc tgccggcgaa gctccgattg tgggggcaga cagtaaagcc ttagcccgtt
     7621 caatccgtaa tttaggtaag gtcgatccga ttttggtttc agataccgat caacttggcg
     7681 aggtattaga tcaaattatt caagacggtg atttaatttt ggcacaaggt gcgggcagtg
     7741 taagccgcat ttctcgtggc ttggctgaga gctggaaaaa ttaaatactc tctccccttg
     7801 cgggagagag accgaaaaat acttcgttca gaagtatttt tcagagagag ggtatatatt
     7861 taaaggattt caaatgagta ttaaaaacga aaaaattgcc gtcttattcg gtggcgtttc
     7921 gcaagagcgt gaagtttcac tgaattctgg tgcagcggta acagctgcat taaaaagttt
     7981 aggctataac gtagaaggca ttgatactaa agaattcccg attgaaaaat taaaagaaaa
     8041 agggattcag cgtgtattta atattttaca cggcggtatt ggtgaaaatg gcgtactgca
     8101 aggtgcgtta gagcaaatgg gtattcctta caccggttgt ggcgtaatgg catcagcagt
     8161 gacgctggat aaattccgga ctaaattatt atggaatgca gtaggtttac caacagcgga
     8221 tatggtggtg gttcagcgtg gacaagtggt cgattttgac caaattattg caaaattagg
     8281 cttgccggta tttgtgaagt cttcgtgtga aggctcaagt gtgggtgtat tcaaagtaaa
     8341 aaccaaagaa gaattggcac cggcaattca cgaggcatta aagtttgatt ccattgtgtt
     8401 ggtggaagaa tttttagccg gtaatgaata ttctgtaccg gtattagacg gacaagttct
     8461 accggcggta caagtaattc cggacggcga attttatgac taccacgcaa aatatgtgtc
     8521 ggataacacc caatatgtag taccggcatt aaatgacgaa cgccaagcag aggtcgccaa
     8581 attagtgaaa gcggcttacg atgtggttgg ctgtcgaggt tggagccgta ttgatgtgat
     8641 ggaagatggc gaaggaaaat tccgcttggt tgaagtaaat accaacccgg gaatgaccag
     8701 tcacagtatt ttcccaaaat cggcagcaac agttggtatt tcctttgaaa aattagttga
     8761 acgcgtattg gagttaagtg cttaatgggc atcttccgca agaagaacag cacaaatgtg
     8821 cgtttgaatg ttcttaatcc aaaaacacct gtttctccac gtaaatggct agtattcatt
     8881 aagccattaa ttgtgttatt atgtacacta tttatattcg gtgtgtatag taattggcaa
     8941 aatatactcg aaagttggga taaaacaccg attcgcgctt atgcattaac acataaaaca
     9001 caatttacaa caaatgcaga tattcgtgaa actttgtcta aagaacctgc tctaaaagga
     9061 tatttcggac aaaatattaa agaggtcaaa gataagcttt tatctatacc ttgggttaaa
     9121 gatgtggctg ttcgtaaact ttatcccgac cgattaagta ttactttgct agaacataaa
     9181 cccgttgcaa tttggaatga tactaacttt gtctcagaac aaggaaccgt ctttagttta
     9241 ccgaaagaca gaatcgataa aaatggactt ccattactct atggtccaga tacggaagga
     9301 aaaagtgtat tagaggcatg gaataaaatc cgagctgatc taaatgcccg caacttggat
     9361 ttaacctccg tttctgtaga taatcgaggt tcttggacaa ttaggctttc taatcaagta
     9421 gaattaagat taggaagagg ggaatggact tctaaaattg atcgttttgt aacaatcttt
     9481 cctgaaattc atatacctga aggtaataga ttagcttatg ttgatttacg ttatccacat
     9541 ggcgcggcgg ttggatttag tcctataaaa aattaaactc agtgaacaca aaaacattat
     9601 gacaaaagca gtagaatcaa aaattatcgt tggtcttgac attgggacat caaaggttgt
     9661 tgccgttgtt ggtgaagtat tacctgatgg tgtaattaat gttatgggag ctggcgtttg
     9721 cccttctaaa ggagtcgatc gaggtggcgt tattgatctt gacgctgccg ttaattctat
     9781 tcaaagagcc attgagcagg cggaatctat tgccgattgt caaattatgg gtgtaacact
     9841 ggcaatctca ggtcagcata ttgttggttt aaatgaagca ggatcatcaa cattatctgg
     9901 aggtattgtt acccaagata atattgaaag tgctgtggat atggcaaagg caattaaatt
     9961 acaagatggc ttagaaacat tacacatgat tccacaagaa tattacgtgg atagattgcc
    10021 tgcgactaaa aatccaattg gcttatcggg tatgcgttta caagttcaag cacacttaat
    10081 tgcttgccat caagcttggt taaaaaactt aaaaaatgcg gttgaacatg ctaaattaaa
    10141 agtcgatcaa gttgtatttt caggtcttgc ctctagctat tctgttttaa ctgaagatga
    10201 aaaagagctg ggtgtttgct taattgatat tggtggcggt acgatggatg tactagttta
    10261 taccgatgga gcattaagat acagtaaagt cattccattt gcaggtaata acattactga
    10321 ttatttggct cgtgtattta cgacatctcg ccctgaagct gaaagcctta aagtaggtta
    10381 tggtagcgca atttcgcctc caacccataa ttcagataaa aaaattgagg tggcaggact
    10441 aggtggacgg atggcaagaa tctttacccg agctcaggtg gcaacggtta cctcacaatg
    10501 ttataacgat ttgctaaaag ttgttgaaga ggaattaacc caattacgcc atgaactttt
    10561 ccaaaaagga ataaaacaag agttaattgc cggtgtagtc attactggtg gtggctcaca
    10621 aattgaagat attgtagaat gtgctaaatc aatttttggt tcacaagttc gtgttggata
    10681 tccactcaat attactggct taaccgatta tgtgaataaa ccacaatatg caacagcatt
    10741 agggctttta caatatagcc actataatta tactgaacaa ggtacaagta cagattctaa
    10801 tgaagatatc tttgctccta ttggtcgtgg aaccaagaaa atcattgact tcttcaaatc
    10861 aaaattttaa tagtgttaaa ataaacacgc agggagataa aaatgtttga acctattatt
    10921 gaacaaacgc aagatgctat cattaaggta gtgggtgttg gtggtggtgg cggtaatgcc
    10981 gtagacagaa tgtctcgctc tgccgatgat attaaaggtg ttgaattctt tgatgtaaat
    11041 actgatgctc aagttttaag aaaaagaacc acacgccaaa ctatccaaat tggagcaagt
    11101 acaactaaag gtttaggtgc aggtgctgat ccaatggtag gaaaacaagc tgccgaagaa
    11161 gatcgtgagg ctatcgctaa tgcattaaaa ggtgcaaata tgacctttat tgctgttggt
    11221 atgggtggag gtaccggtac cggagcagcc cctgttgttg ctcaaattgc caaagagcaa
    11281 ggctcactaa ctgtaggcgt tgtaacaaaa cctttccgct tcgaagggcc tcgccgtatg
    11341 cgctttgcag accaaggcat taaagagctt tctcaatatg ttgattctct tattataatt
    11401 cctaatgata aattacgtgg tttaggtaag caaacaacag cagtagatgc ctttgccgca
    11461 gcaaatgatg ttttaagtaa ctgtgtgctt ggtattacca atatgattac cagttcgggc
    11521 ggttctaccg gtgcagatat taacgtggac ttcgcggatg ttcgtacagt aatgtctggt
    11581 aagggacacg ctatgattgg tacaggtttt gctgaaggtg aagttggtga aggacgagcg
    11641 gaaaaagcaa tgaatgatgc catttctagt ccattacttg aaaatgtgga tatttcaggt
    11701 gcaagtggta tgctcatcaa cattagtgct gggacagatt tcttattaga agaagtttat
    11761 gctatgatgg acttaattta tggctttgca acagaagatg ccgcaattgt atttggttgt
    11821 aactattacc ctgaaatgga tggaaaagtg agtgtcactc ttgtcgcaac aggaataggc
    11881 caacctgagg aagctctaca tatgccacat aaggctcagc cagtatatgc acagcaagga
    11941 aatcatgttc aagctacaca gcctactcag ccaaaccatg cggtacaaca accaaacttt
    12001 actcaaccgt caagttatgg tcagccaaat caatttagtg gtcaaccaca accactacaa
    12061 caacctgtgg ctccaaaacc acaatcggtt gatacagcac aaatttttaa cccaaattca
    12121 attccgggtt ttatgagaaa tagtcaataa cttccactca tttcggaagt aaggacaaaa
    12181 tatgactaaa caaagaacat taaaacaagc agcaaaagta acaggtattg gcttacatag
    12241 cggcaaaaaa gtaaccttaa cgttacgccc tgccccagct aatacaggag ttatttatgc
    12301 ccgtaccgat ttagagcctg tcgtttattt ccctgcaagc gcagactcta ttcgtgatac
    12361 acaattatgc acatgtatgg taaatgatga tggtgttcgt atttcaacag tagaacattt
    12421 aaacgcagca atgtcagcat taggcttaga taatgttatt gttgaagtag atgcacctga
    12481 aattccgatt atggacggta gttcaagccc atttatctat cttttattag atgccggaat
    12541 cgaagaacaa gatgcaccga agaaatttat tcgcattaaa gaaacagtac gcgttgaaga
    12601 aggcgataaa tgggccgaat taaaaccata caataaaggt tttaaattga acttcactat
    12661 tgactttgag cacccattaa tccccaaaaa tgtagggagc tattccattg atttttctgc
    12721 tgagaacttt attcagcaac taagtcgagc gagaaccttt acatttatga aggatgtaga
    12781 atacttgcaa tctattggtc ttgcattagg tggaagcctt gataatgcta ttgtattaga
    12841 tgattaccga attctaaatg aagacggttt acgatttaaa gatgaactgg ttcgccataa
    12901 aatgctggat tcgataggtg acttatatat gtgtggttat aatatcctag gtgaatttag
    12961 tgcatataaa tcaggtcatg gcgttaataa taaattatta agaactgtat tggaaaataa
    13021 aaacgcttgg gagtttgtta cctttgaaga taaagcagaa gtcccacaag gttaccaagt
    13081 acaacaagaa atttttattt agtctaaatg gcttaaaaga cgaacagaaa tgttcgtctt
    13141 ttattttgca aattttttct aatatttaac cgcttgcaac ccgcctcatt agcgattttt
    13201 tcgcccttat ctatttactg tttaaaaaaa cagttgtact atatacccat acagttaatc
    13261 ttgtgtgatg tattatgctt actcaactta ctattaataa ttttgcgatt gttcgccatc
    13321 ttattcttga attaaatgaa ggtatgtctg ttattaccgg tgaaaccggt gccgggaaat
    13381 caatcgctat tgatgcctta gggctatgct tgggttatcg ttctgaaagt gggatgatta
    13441 gaaacggttc ggacaaagca gatataagtg caacctttac tatgcagcca catagccctg
    13501 cttatttatg gctacaagag catgaactgc ttgatgaaga taatcctcaa gagtgtatct
    13561 tacgccgtat gattaatatt gatggacgct caaaagcctt tgtaaataac cgatcattac
    13621 ctgtttcaca acttcgagag ttggggcaat atcttattca tttaaatggg caacacgcac
    13681 cacaattact cctaaaaaac gaatatcaac ttgaaatagt cgatcattat gccacgttac
    13741 agcctctatt gatgaagatg gcaaagcaat atgggaattg gaaagaactg aataagcagg
    13801 taaaaaattt ccaaaaacag tgccaagaaa atgaagctcg caaacagcta ttagaatatc
    13861 aagttgagga attagatgaa tttgcaatta aagcaaacga atttgaagaa atggaagaga
    13921 aatacaatat cttgtcttct tccgaggagc ttactgagct ttcagatgaa atcacacgct
    13981 tattaagtga tgatgaaatc aatgcaaaca gtctgattta taaagcgtta cgcaatgcag
    14041 aaaacttggc tgaggttgat agccaatatc agggcatttt agatatgctt aatgaggccc
    14101 tgattcagat tcaagaagca agctccgaag tggctcaatt agccagtaaa attgaacaag
    14161 atccggaatt actacaggag ctggataata gaattgcaca aactatatcg ttagcacgca
    14221 aacaccatat tcaaccgaat gaattatggc aatatcacgc gacattaaaa gcagaactac
    14281 aggaattact ggattttgaa gataatgaag aacaactcat tcaaaatgaa aaacaagctt
    14341 accaagagtg tataacatta gcagaagaaa tttaccaaaa acgtctagat gccgcacata
    14401 agctctctga acaagtaaca aaacaaatta aacacttagc aatggaaaac ggtgagttct
    14461 ttattcatat agaacataat cttgaaaaaa tgtctgcaaa tggtgctgac tatgtcgagt
    14521 ttaatttacg cagcaattta ggacaacaag cccaaccact ggcaaaaatt gcttctggtg
    14581 gtgagctatc tcgcatttct ctggcagtac aagtgcttac cgcaaataaa ctttctacgc
    14641 caactattat ttttgatgaa gttgatgttg ggattagtgg ctctgctgcc actacagtcg
    14701 gaaagctact gcgtaagcta ggcgaaaaat gccaagtatt atgtgtaacc catttacctc
    14761 aagtggcaag ttacggcaac cagcagttta atgtacaaaa atatgtagaa aataatcaaa
    14821 ctgaaacgca aatgacatta ctcacagaag cagagcgtat tcacgccttg gctcgactat
    14881 taggcggaag cgaaatcacc gaaacggttt tagctaatgc aaaagaaatg ctaaatttag
    14941 cgaaaaataa cgaatagcca aaaagaaaaa tcgcatcaat gaatattgat gcgattatga
    15001 atttggtgga ggtaaacggg atcgaaccga tgacctcttg catgccatgc aagcgctctc
    15061 ccaactgagc tataccccct tagatacaag cggaataata tgctttccgc ttgaagatgt
    15121 caatggcttt aatcaagcaa ggtgttgatt gattaaaaac tagctattcg cctgaataaa
    15181 ctcaatcgct ttttgtaagc gagctaaggt tctttcttta ccgactaatt tggcggtgat
    15241 atccattgac ggcgattgcc cacttcctgt taccgctaaa cggaacggca taccgacttt
    15301 gcccataccg atttccagct cggcagcggt ttggttcatt gcctcgtgga tattttccac
    15361 cgtccagtca ttgcaagcgg tcaatttttc caataatttt gcaagtggag caacggcttc
    15421 ggctttgaag tttttagcgg cagctttttc gtcgtaagcc ttaaattctt gatagaaata
    15481 gcggctgctt tcggcaagct cttttaaggt tttgcaacgt tcgcccagta cagggataat
    15541 ttcttccaat tttggaccgc ttgtgaaatc aatgccttga gtttgcatat gccattcaag
    15601 atgttttgcc acataacttg gggcaagact gcggatatag tgttggttca accattgtaa
    15661 tttttcagtg ttaaatgcac ttgccgattt actgactgaa tgaatgtcga acagctcgat
    15721 catttcgtca cgagagaaaa tctcttggtc gccgtgtccc cagcctaaac gcacaaggta
    15781 gttaattaag gcttccggta gatagccgtc atcacgatat tgcattacgc tcaccgcacc
    15841 gtggcgtttg gagagttttt gcccgtcatc gccgttgatc attgaaacgt gggcgtaggt
    15901 tgggattggt gctcctaatg ctttcaaaat gttgatttgg cgtggtgtat tgttgatatg
    15961 gtcttcaccc cgcacaacgt gagtaatgcc catatcccag tcgtccacca ccacacagaa
    16021 attgtaggtc ggcgagccgt cagtacggcg aataatcaag tcatctaatt cgctattggc
    16081 gatttcaatt cgcccacgca ccgcatcgtc aaatactacc gagccttcgg tcgggttttt
    16141 gaaacgcaca acatgtggtt ggctcgggtc gttttgcgga ttgtgtaagc agtgctgatc
    16201 gtatttcgct ttctctttat ttgcttcttg ctctgcacgt acttcgtcta aacgttcttt
    16261 cgagcagtag caacggtatg ccgtgccggc ttctaacatt tggtcgatca cttggttata
    16321 gcgatcgaaa cgcttggttt gaaagtatgg gccgtgttcc cacgccaaat ccagccattc
    16381 cataccctct aaaatagcgg cggttgcctc aggggttgag cgttcaagat cggtatcttc
    16441 aatacgtaac acaaattcac catcattatg cttagcatat aaccaagagt agagcgcggt
    16501 cctcgcccca cctacgtgca agtagccagt tgggctaggt gcaaaacggg tacggacttt
    16561 tacattcgga tctaagggga aaagggtttc aattttcatt ttatattgcc taattgatga
    16621 ttcttaagaa aaacttatct attttactac gcttgagggt gaatcatagt aaaaaattaa
    16681 atttgcgggg taaaaaatca gcaaacgggg taaaaagaac aaaaagggtt tgacgaaaca
    16741 gcaaaaatct ctataattca cttccacaac agcgggcgat tagctcagtt gggagagcac
    16801 ctcccttaca aggagggggt cactggttcg agaccggtat cgcccaccac ttcaacttaa
    16861 gtgtttcgtt gttgtatcac aatctaattt tgaaaacggg cgattagctc agttgggaga
    16921 gcacctccct tacaaggagg gggtcactgg ttcgagaccg gtatcgccca ccacttcaac
    16981 ttaagtgttt cgttttcaaa ttccctttga ttttaagtct caagtgggcg attagctcag
    17041 ttgggagagc acctccctta caaggagggg gtcactggtt cgagaccggt atcgcccacc
    17101 acttaagact aaaatcataa acttcaaatg gcgatttttc gtatctgaag ggcgattagc
    17161 tcagttggga gagcacctcc cttacaagga gggggtcact ggttcgagac cggtatcgcc
    17221 caccatctat ttagtatcaa agcctaaaac ttatatcata atctaataac ccctttaaag
    17281 tcataactaa aaagggaaaa taa
//
LOCUS       DANLUT010000036        16757 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLUT010000036 DANLUT010000000
VERSION     DANLUT010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16757
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(1..9463)
                     /locus_tag="PXB38_000980"
                     /pseudo
     CDS             complement(1..9463)
                     /locus_tag="PXB38_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
     gene            complement(9516..11291)
                     /locus_tag="PXB38_000981"
     CDS             complement(9516..11291)
                     /locus_tag="PXB38_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5353317.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQITDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAAKSLHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVREIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHSRYHQ
                     EVFGAFDKSYLYAGESDTDKLTLSYLLYRDAKRKTTLSGSLWSRQSQNYIDGAEIGVN
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPSHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDLFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            11447..12532
                     /gene="queA"
                     /locus_tag="PXB38_000982"
     CDS             11447..12532
                     /gene="queA"
                     /locus_tag="PXB38_000982"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL5353318.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHCCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEDQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(12559..13097)
                     /locus_tag="PXB38_000983"
                     /pseudo
     CDS             complement(12559..13097)
                     /locus_tag="PXB38_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13110..15401)
                     /locus_tag="PXB38_000984"
     CDS             complement(13110..15401)
                     /locus_tag="PXB38_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL5353319.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSEQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWEQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAGFAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSI
                     LAVASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEG
                     ISAFALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAW
                     FALSHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQ
                     TEWIMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEV
                     EAIFLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLL
                     AIYPSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHG
                     SKSSTGETLLSITQPAFAVISAGRWNPWKLPNKQIIEKLNRRHINVLNTVETGMIRVK
                     FYPSSIEIEQARGAFSPWHKQFY"
     gene            complement(15543..16757)
                     /gene="sstT"
                     /locus_tag="PXB38_000985"
     CDS             complement(15543..16757)
                     /gene="sstT"
                     /locus_tag="PXB38_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL5353320.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSIGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFML
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
BASE COUNT         4290 a         3961 c         3366 g         5140 t
ORIGIN      
        1 gctaatgata atcggcgatg ttcccagcca tacatatgac ctatatctat aggacctttg
       61 attatatttc catctaaatc tcgataatta ccatttggca atttttcata attagcataa
      121 attttctgta acgtttccga gcgtaaataa gctcggttat atagcccatc taccggatta
      181 tctgtcgata aatagcgtcc cgtttcggca tcaatttgct gagacaaacg gttaaaatgt
      241 ggatctaccc cggcttgatg gtttggcgtt tcaaaacgat tgagatcttt ttgaactact
      301 gtcaccactt tcccgtcttt cgggtctgtg aactgataag ctttatagcc atcaatattt
      361 tttacctgtt tggcatcatt cggtaaagcg tgccaacaat cattatgcac ccatacccct
      421 tcattatcgg catttgtacc tctaataaag taagtatgat ctttctctac cgtcatattg
      481 taggctttta atctttcctg tttgatttct accttagtga cagtctgcca ctcaccactt
      541 tcagcaagta agcgatagcc tttttgcaaa tgttgagcat caacccactg agcttttgct
      601 atctctccgt tgtaagaatg cccctccgaa gaaatcggca ctctgcccga taatacttgc
      661 gtaaagaacg ggtggatttt gtttgacaca atggtgtggt attttccttt gctgtctgcg
      721 acttctacat acaccgtata atcgtatgga ttactgtaat gagcttggac tttctgatag
      781 gtggttatac cggtgcgttc atttttcgcc agcaccttat cgcccacttt aatgctggaa
      841 atctgtcgat aacctttatc agttttgact tccatatcac cgtggaatga gcaagtgcct
      901 aaactagcgc tcgatctggt cttaggaatc gcaagttctt tacctgattt ggtgactatt
      961 ttcgccgttg tccctacacc tgttttaaca agagcaccag caccggttaa tgctgtcacc
     1021 acatcagtca tcatattgcc aaactctttt ccggcattaa aagaacctac agcccctgcc
     1081 tgttcatagt aaacctgcat tttatcgagt ttagctaaat actcctgttt agtcatatta
     1141 gcaatatagg agagcgtatc ttctcttgcg atcaattctt tcatcgccac aatagtttct
     1201 attgggcttg agaacatgga gatcaatcct tcaacgctct cagcgagatt ctcaggaaca
     1261 ccagcaacgg cgcctgatac aaaactaaca tcttgcccaa tatcaactaa tccccaatat
     1321 aatcgaactt ggttttcaca gcgggcatca ccatggcagg attttaattc ttgtgagcgt
     1381 ttctgctcct gccagttcga gaggtagtta ttctccactg cccttttccc aatatccgcc
     1441 ccaaccgctg ccgattgtgt actatcccct atcaagcccg aagccagtcc gcttgcaagc
     1501 tggcttagca acgccacatt ctgtttctcg gcttcggtta agtcttgcgt ggatttgccc
     1561 ttgtagaggg ttttaactat aaagtccgct gccgcttcgc tccctgcgcc tgccgcagcc
     1621 cctgccagta cattgttccc tgccgcagcc gcttccaccg cacctagcaa tgcgtgagca
     1681 atcaagttag cttgggtatc gccttcggtg tactttttga tttctgcatt taagtatggt
     1741 gaggctaaac ctactgccgc ttgtcccacg tctttcgtcg ctaaaccttg caaggctgcc
     1801 gtcaccgctt ccaccgctcg tttggtttta ctgcccgtgc cgtagttttt atcaaactct
     1861 ttttgcaagc ggtctaaatt ggcttctaat ttaccaatct cttccttgct cgctttttga
     1921 gcttgtgctt tgcccaattc cagcttcgct tccgtcactt tttcacgctc actatgcgtg
     1981 taaatctgat aagccttttc cgcaatctcg cctatgcctt tcaccagctc ctgtgtttct
     2041 ttcacctcac tgatatcgtg tttcgtcact ttttgattgg cgttttgcgt atctcggttg
     2101 agatgattaa gcgtagtttc cgcatttagg tcttcggtga gggtgatagc gatattttct
     2161 ccaatcgctg cctttgttgt gcttcgctcg ctttcgtttt tattgcccag taagctcagt
     2221 gccgacatcg ggttcacccc acttgtccct ccgctaatcg cgacacttcg ggttttcaat
     2281 tcactgtggt tttcaatatc gccggtggtc agcgtgccgg cttggaagcg gttgttttct
     2341 ttctccgctt ggctagtcat taccgctccc tcaaaatggg cgttcttttt cactttaacg
     2401 tccattccac ccttgcctat gtcgattgca gtttggtttt ccacctgagc agtgttcaac
     2461 ttcgctccat tatatgccac atgaccattt actcctgttg tccctaccgc caatgtgcca
     2521 tgtacgctgc cttctgtgta ttcgctttta tatttgctta tatcttgtcg acttcttgcc
     2581 tcaaaatctt gtacctcacc ttcccaatga tttgctttga cattggttgc atccagcatg
     2641 agtttaccat ttgcagaatt tgtaacaatt ttacccgctt gcagttggtt gttctgccac
     2701 gtttcagttt cgatattctc cttgccttta cctccactca ctcctgcctc aaaaccaata
     2761 ccaaaactat ctctatctaa accgataaat acgcccacac tcgcactgtg attcttattc
     2821 ttagtgttgt tttgataagt atccgcaaca cctttggatt caatacccag cttaccgtca
     2881 agcagcaggg tgtctttcac tcgggtatcc accccttcca gcgcaacttt gcccgctccc
     2941 gaaatcaagg caatattgcc gccgttcagg gtgcttttgc tgtgggtcac gctttgacta
     3001 cggctttctc tttgctgttt ttgcgtgccg agactgactg aaatcttcac cgccggattt
     3061 tctgccgcag catggttttc tgtgagtgca ttgccaagat tgcccaacgt ttctgccact
     3121 ttctgagcat tttgtgctgc aatcacggca tcctccgccg cttttaccgc atatacccct
     3181 ttgagtttct cgttttgtgt tgccttcgct ttttgcaccg attgccgtgc cgattgcacc
     3241 gcatccgtta ccggtgtact caacgcaatg cttaagcccg actggctaaa ttcataatta
     3301 tcggtgctgt taataacatc tttccctgat tcaacccgta ccccgttttt gcctgaaatc
     3361 acggcggttt tttcgttgga aatcagcaca tcgacattgc tcacgctcgc tttattgccg
     3421 gcttgaatcc gaatattgcc cccttcactg cccaatgtat tgcgtgccgt gctttggatt
     3481 gccccctcta agctgttctc ttggcgtgtt ttttggctac cgatagtaaa gccgatttca
     3541 ccaccgttca agaaaccgct gcgttttgtc tcacgaatat gctgttctga aagttggttt
     3601 gttgccgaac tgagcgttac attattaccg ccgataatat caatatcgcc actgcgtgag
     3661 acggcaagaa gactttcacc ttgaatatcg tgaccggctt tcactaaaat gtcttcaccg
     3721 gttagttcag tgcctttgtg ttcggtttca gaaatattgt cataagtcgt ttttgttttc
     3781 ttcgctagcg caccaccact ttttgttttg tgatactctt cataatcgcg agaacgtgtt
     3841 gcgctaccca acaccatatc attttcagcc agtaacgcta aacgcgcttt ggcatccaaa
     3901 tccgctcctt cactgtaaag gtttttccct gaaaccacca catcgccttt gccttgcacc
     3961 cgtgaaatga ccacatcatt caaggcttca ttacgatagt gattgccacc gcccattttt
     4021 tcatcaaaac caacctgtaa agcggtcaaa ttcaactgat tttttgcaga taagtaggtc
     4081 tgcccctgtc cgtcattgat gatgtctgcg cctgctgagg tgatgttgcc tgcctgtact
     4141 tgcagcagtc cattttcatc tttaacgtgc agtagggctt tgcggtcaag gttggtttca
     4201 gcgcgtttga aaccgtctag gtcaatctgt gtggttcgag tggtggaggt atggttaaaa
     4261 ttgcccgcaa tatccagcaa aatcgcttta tccgcttcaa tcttgccgcc gatattctct
     4321 agatcaccgc tcactttggc agcaagcacg ccaccactga gtgtgccact attctctaac
     4381 cgttcggcat taaactgtgc taaacggcgg cctgctatcg tgccttggtt tacaatctct
     4441 ttactgttga tggtaagcgc atcggctgaa atcaggctgc ctttgccgtc aatatcacct
     4501 ttgcgtgcaa gggcatacac tttcggcact aataccgata ccgtttcacc gcttggcaag
     4561 cgaaccgttt gggtttcaaa ccaaacaata tcgctggtca agcttgccac ttgctccggc
     4621 gataaggtaa tgcctaaccg aagattgaat ttctgcgcaa aggtgatgcc ggcatccatc
     4681 agggctttat attggctatc aaaatccgta tagtcgccca aaaattgtct gccggttaag
     4741 cggttgattt gctctcgaat taagcgctgt tcataaaaac catcgcccaa acgtttatgc
     4801 acattgttat ggtcgtggcg tagggcattg aacatataat cactgcttaa ccagcgtttt
     4861 ttatcggtga aatccggatc ggtttcgatc agaacgtggc tatccgcttg agggttaatg
     4921 cgataaagcc cttggtttgg caaacgggta tcgaccgtca ttgagcgaac ctcaaatgcg
     4981 gctgcattcg ggcttggtat gcgttcaatc gccattgttg gcggattagg ggcatcgggt
     5041 agattacccc gttcaacctg attgccttcc ggcttcacgg catttgctgc tttagcgtcc
     5101 acataatctg tataagcggt cggtgaagta ttttccagct cgacaaaaat attcatatcc
     5161 ttatggactt cttttaaacg agcgagagga ccatcatttt catcgtagcg ggagtggcga
     5221 cgtcttgtgc ccccgtggta ctcagtaaaa gagaattgtc gccttcccag ttcccaatct
     5281 tggcgaacag catctgcatc atcaaggttg gcaattctac tgcgaccaat cgggtttaac
     5341 gctttgcctg caataaccca acttttatcg ttgataaatt catcgctttg ataagtgaga
     5401 tcgccacctg ccaagatctg tgccggtaag ctggctttgg tgatattctc ttttaccata
     5461 cgctctttaa tccacaaatt ccagaaatgc gggtattctt ggcttaaatt cgctttattg
     5521 tgctttgcaa tcgcttcatc taatgcttga atattggcac catattttgc ttcccaatca
     5581 attaacggtt ttaatagcac ataacgctga taagccgctt ctgccgcttc ataggctttc
     5641 agttccgctt gatatgtttg tagtcgtttt tggtattggg cttccgtttc cgtagagcct
     5701 ctaacaggtt caatcggtct tgccggaacc accggtgcaa tgccttgccc ttgttccttc
     5761 tgtaattttt cctgctctgc ctcacttaaa tgctgattcg ctaaatcttc ttcattcatt
     5821 gcttgaataa tttcaggcgt catttccggt gcatcttcag ctggtggtgt taaattaaac
     5881 cacgtccata ctgggttatc ttttttataa ttacctgcag gtaatagagt acaatctaca
     5941 ctttcatcat tcgcacagct ttgagcatag ggttttgcca atacggtcgt ggcattcagc
     6001 tggctaatat cggtaattac cggcaagttt gcttcatcat acttttgcca atagctccac
     6061 gttttgcgat agtagccttt gcggagttga ttcacattaa ttgtcggcaa atgcccgtta
     6121 tcatatacat cacttccacc tcgattatgc ttatctcttg gcaaaataaa atgttcgttc
     6181 acagtttggc gatcagtggt ctccaattcc gaacgataat gactatttac attcgctacc
     6241 ttatccgcat tcaactgaat acgcccttca gcttcaataa tactgctgcg gttatgtagc
     6301 tgctctgcgt tgccaataac ggtatcttgc tcatttaatt gacgtccaat cgctatctct
     6361 cctccgctat atattaatga accgcttttc ttattcgctt cataaactag ggtattattt
     6421 tcaattactt tagccgctaa accgagagat tgacgagcag caatagtggc agaggtcccg
     6481 tctttatctt gatttagtat cctctccgca cctaacgcca ccttatcgcc ataaatattc
     6541 cctgtgccga tattgtggat ttcttgagct ttaatcacag tttgagcgtt atcgttgtcc
     6601 gagcggctat tgattaagcc ttcgttatag acggttgaag ttgcagtcaa acgggtatct
     6661 gccgagctta ttcgggcatt ttgtgcattg gttatttggt ttgccgtgag ctgcaagcgg
     6721 tcatttgcgg ctaatttttt gcgattgaga atatcgccct cagtctgaat aatcatcgac
     6781 ctattcgcat tgatatcttt ggtaatatca aagttctctt gcaaattcag gcgaatatcg
     6841 cctgcttgta catcaccatc accggataac gctttggcag tgatctccaa accattattt
     6901 gcagaaactt ttccctcggt attcgtcatt gtgagtgatt ttccgccgaa aatagccaga
     6961 tcgccccaac ttaaaatttc cccattacgg ttatttaagc tgtcgctgag ggtaaatcgt
     7021 gctgatgagc cgatataaat accgcctttt tcattattga gctgttttgt gctgttcagt
     7081 acaaactgcg atgcaataat cccctgtatt ggctgaggtt ggcgtgccaa ggtaccttga
     7141 ttttccacct cgaaactgtt catcgtaagt gagccacctg cttcaataag tgagccattt
     7201 tccgagatcc gattatttaa gacagtcggt acattgagcg tgatatctgt ggccgatttc
     7261 agtaccccac cttggttatc caaaagcgtg ctatttaggg tgagatttcc cacactttga
     7321 ataacaccgt gccgattatc tacttgttgg gaaaccgtga gcgctaactc ttttactgaa
     7381 ctaatttctc cctgctcacg gttatctaag gattgagcgt taatcgcaac accgctggcg
     7441 gaaattcgcc cgccttgatt ttgcagttcg ctagttatat caagggtttg ctccgtttga
     7501 gaggtgatca cccccgattg attttttaac gtattgaccg taatcgcctg tttttcgcca
     7561 ctcaaaatca gaccttgctg attattcagc aatggagcac gaatagataa ctcgcctttt
     7621 gcaaccaatt tgccatcgac tgaatccaca gcatcattta aatttagccc taaacgcttg
     7681 ccactactta atagcccttg gttatttgtt aaacgattac cgtcaatctc aaaatgtcca
     7741 cccactgaaa agcgagccga gtcagtatgg atactctctg cttttaggcg aaaatcctgc
     7801 tcaccagtct gcttccaaac cgagccacga gcatttaaat tcgcttgttg ggcctcaatc
     7861 acctctgcgg ttagctggct tccttcagtg gaaagccatt ttggggtggt gagcttgatc
     7921 tgatttgcac taaactgcgc actattcgcc tgaatatcgc ccgattttgc actgtattca
     7981 acggtatggg cattattttg gctctgattg gcatcaatct cagctgccgc cacgttaatt
     8041 ttccccgaag cgatattttt tccctgcaca gtggtttttt ctggggcagt gagttgaata
     8101 gttttccctg ccacagattg agcttccagc ttccgtactt caccttgtgc agtgtcggtt
     8161 acgtccaccc cagcggcaat cagtgagttt ttgtcggcgt gaatttggcg ggcggtgtag
     8221 gtgatattgc cttttgcgac cgtttcgcca ctttgctgga ttttagtttc ggcttttttc
     8281 tgaatattgc cgcccctcgc cacgatggaa ccgctatttt gaatatcggc tttcgagtta
     8341 agctgaatat tgccctgttt attttcaatt ttgccttggt tgtcaatccc gtgttgggca
     8401 ttgagttgca cttgtctttg agcgttgaac gtgccgctgt ttacaatccg cccttgactg
     8461 tcaatggtga gcgtatcggc acttgcaccg atatgcccag cgttacgcac gcccacgccc
     8521 tgttccgtac caatcaggtg gattttgcgg catacattcc gcccagctca cccacatcaa
     8581 tggccacctg cggtttttct tcccctgcaa gcggttgatt tgtatgaata atttgcaaat
     8641 tgttgtccga atttgaccgc ttgacggtgt ttttgccggt aatgacttta gtctcttttt
     8701 tcgaccagac accggcgttg attttcgctt ctcgggcgag gatatcggtg taatccactc
     8761 ggctgttgtc cagccctttg ccggcaaccg ttaccttgcc tttttccacc acaaagctat
     8821 ccagattgcc gttgttaatc tgtggtttac ctgtggtaaa agttgctcgg tctgaattga
     8881 taatgccgca gccgtcacag tgcaagccgc tcgggttggc gataatcact tccgcttttt
     8941 tgccagccac ttccacataa cctttcatta ccgaaggctt gctggaattg acttcattta
     9001 aaatcacctt cgcttcgcca cgggcaagat acgggttgcc ctgcaccatt ccggcctgtt
     9061 gggtggcgat gttggtgcgg ctgttgttga gaattgcccc cttctctgct acgtcaaatt
     9121 ggctatattt gttgtgcgat aatcctttat cgttcggggt ttgaatattg atttgtggca
     9181 gcccgttggc ggtttgcaga ataatcggct gctgattttt cggggcggtg ctatcggctt
     9241 gaataatcaa ggtttccgcc atagcgttat ctgataaggt aatgaatccc aacgcacaga
     9301 acaagctgaa cgcaagcggt cgaattttgc aaattttttg taaaattgca ccgcttgtca
     9361 tactttcact ttctgattta ccggctgatt ttgctaattc agataccacc acgatacgtt
     9421 gtaaggtctt gctgaaaata gtgcgaaaac aatgcttatt cataataatt ccttaatagc
     9481 acaatatagt taaatataat acgctcaatt atttattaaa aattgtagcc aatattaaaa
     9541 ccggcaacgg tatctgaggt tttaaaccct tccggttttc gcatcggtct accggcaaac
     9601 aggtcataac taaacccttt aactccaccc cgaaacccaa tggctgttcc cattaaatga
     9661 tgtccgagct gattttccgt tgcccaaccg gacactcgac caccatctac cgcccaataa
     9721 aaagcgtggc tcggattaaa ttgccagctc aactcattac gccagttcca gccccgctca
     9781 ccggaaagag tcagttcacc gtcaaatcca cgtatggtgt aacgcccgcc aatcgaaaaa
     9841 cggtcttgcg gaaccagagg ggttttattc cattgggcat ttaggctact ttgccactgc
     9901 catggctgct tgccccaaaa aaacggtttc gtcaggcttg cacttgccgt gatgatttta
     9961 gggcgagaag tcccttcgcc ataatcttcc tcgggagcag ataatgcccc tcgtgctgcc
    10021 gtacctcgtt tgaaattagc cgaaagctca agcgtagcgg tcgggaaata ttctttatgc
    10081 gaaaaacccg cttcccagcc cgccattcgg cgtttgttga caccgatttc tgctccatca
    10141 atatagtttt gcgactggcg tgaccaaagt gaaccggaca aggtcgtttt gcgtttggca
    10201 tcacgataaa gcaaataaga gagcgttaat ttatcggtat cactttcacc ggcgtagaga
    10261 taactcttat caaaggcacc aaatacttct tggtgatagc gactgtgagt gtgtgaaaac
    10321 gctaactgcc aatagccaaa cggcacggaa tagtaaagcg tgagattttt actggcacgc
    10381 ctgccgttat catcgccttt ttgtttcatc gaatgggtaa aagaggtata gaataggtca
    10441 tttgccgaaa aaatattatc tatagacaga gtggcggagg tttgtaattt acctgtggat
    10501 ttcgagccgg catcgtccag cccgagattt aagcgaaatg gaaacgcttg cgaatagctg
    10561 atttttaaat cactgtctcc cacctccgct ttttcgcttg agctgggtaa aatctcaata
    10621 tttgcctccg ccgtcggcac ccgttttagg ttttccaacg attgctcaat ctctctcaca
    10681 ttcagaatat cgccttcggc aaaagtaaaa ccggttaagg cgtgtagctt ggtaaaacgc
    10741 ggtactttgc cgctatctac cactaaagta ttgcgtattt tgcccggaat cacagttaaa
    10801 actaattttc caccacgtaa atcttgctcc gcagtaacca ctcgtgtagt gacataacct
    10861 ttgccgataa tttcattttg gatttgcttc atcaacacag ctaacccttc acccccaaaa
    10921 caatgcggta atgtcaaatg aagtgatttt gctgcttttt caaacgccca ttggaattgg
    10981 ctggtagtca gagaattgtc aggagaatag tcaatgaggg tgatttgatg aatggggtaa
    11041 caaggcaatt cgtgattgga aagagtaagt gtatcagtga tttgtgtctc gagccgtaca
    11101 tcagctttcg gctggaattt ttctgcttga ttttgttggt attgctgttg gcgatgttgc
    11161 tgagcagcat caatttgttg ttgagttgca tcaatgcgtg cttgttgtac aaggcttgaa
    11221 gaatttgctt cagcaacaaa agaagcactt aacaataccg tgcttaaaat cagattttgt
    11281 ggggttttca taagatcaaa taagtaagac attcaacgtt tttagtctat aaaaatttat
    11341 gttgttttgc aaactccgtt ttatggagct ttatacatat ctgacgactt tggtttttta
    11401 tgctattatc tccgctattt ttatactata gagatataga ataaccgtgt tagtttcaga
    11461 ttttcatttc aacttacccg atgagctgat tgctcgctac ccgactgccg aacgctctgc
    11521 cagccgttta ttacacttaa atggcgaaac aggcgaattt gccgatcaac aatttgtgga
    11581 tttatacgac catatcaacg aaggtgatct gttgatcttc aataacactc gagtgatccc
    11641 ggctcgcctt tacggtcgaa aaccgagtgg cggtaaagtg gaagcattag tagaacgtgt
    11701 gttagacgaa cactgttgct tggctcacgt taaagcctca aaagcaccga aagaaggggc
    11761 tgaattgatc tttggggaag ataagctagg tgaaggaaaa ggctttacag caacaatggt
    11821 agctcgccac gataccctat ttgaattggt gtttaacgaa gatcaaccgt tattcgaatt
    11881 gctacagcaa gctggtcata tgccacttcc accttatatt gaccgccccg atgaagatgc
    11941 tgaccaagag cgttatcaaa ccgtttatag caaagtgtta ggtgcagttg ccgcccctac
    12001 cgccggtttg cattttgaca atgcaatgct tgaaaaacta aaagcaaaag gggtggatac
    12061 tgccttcgta acattgcacg ttggtgccgg cactttccag ccggtacggg tagaaaccat
    12121 tgaagatcat aaaatgcacg ccgaatatgc cgaagtgagc caagaagtag tcgataaaat
    12181 tctcgcaacg aaagccaaag gaaaaagagt gattgcaatt ggtacgacat cagtacgctc
    12241 ggttgaaagt gccgcccaag cggctgaaaa agatgggaaa ttgattgctc cgttcttttc
    12301 tgacaccgct attttccttt acccgggaaa aacctttaaa gtcattgatg cgttagtcac
    12361 caatttccat ttaccggaat ccacgctaat tatgttagtc tcagcatttg ccggctatag
    12421 aaatacgatg aatgcctacg cccacgcagt agaaactaaa taccgttttt tcagctatgg
    12481 cgatgcgatg tttatcaata aaaacccaaa tgcgttgagt gatgttcctt aatttatgag
    12541 ggttataagg gaataacatt atgaacaaaa acaatcttcc aaccatttta agggattgtt
    12601 ttcaatatat tcaataattt ggaagtacga tgtttcatta cgaataatgt gttcataata
    12661 attcctttgc caaatttcag aaatatcggt attttgacga acccatttag ttacgccaat
    12721 tttaaaacca cgcacaatag agccgattgt tcgtgatgtt ccccgtaagg gcgaaacatt
    12781 tttcgccctt atacatgggg caaatgatga ttttccccta cagtttcgac gatttcaata
    12841 atgccatgta aatgattagg cataatcaca aagctatgca agcttacatt tggaaaatga
    12901 tcgggtatat cttcccaaca ttgacgtaca atattcccta tcttattaag cctcatttca
    12961 tcatcaacaa tctcaccgag aaaatggtgt ttatttttac aacaaatagt aatgaaatag
    13021 aatccttgtg atcggtaatc ataatgcttt agacgaattg aacgcctcct atgaatctcc
    13081 ggctgatatt tctgcatttt tcttattcct taataaaact gcttatgcca aggggaaaat
    13141 gccccccttg cctgctcaat ttcaatagaa cttgggtaaa attttactct tatcattccc
    13201 gtttctacgg tatttaatac attaatatgt cttctgttta atttctcaat aatctgttta
    13261 ttcggtaatt tccacgggtt ccatcttcca gcagaaatca ctgcaaatgc tggctgggta
    13321 atcgataata aagtttcgcc agtgctgctt ttgctaccgt gatgtccaac ctgtagaaaa
    13381 tcaattttgc cgagctgatg ggcaaattgg cgttcttgtt ccacgccaga atcccctgtc
    13441 agtaatatct tcaagcggtc gtttttggct aaaataacgc aagagtcttg gtttttagct
    13501 cgttctgcaa tgtgtgacgg gtaaattgcc aataattgcc attcgccaaa ttgccacgat
    13561 gttccggcaa tacaaggctc gggatttata ttgtgatacg tcactttgct tgaactaatt
    13621 aaccttgctt ttgggtatgc ttgcaataac tccactaccc cacctgaatg atcattatca
    13681 tcgtgactta gaaaaatcgc ctctacctca atgccatttc gctttaaata cggcaagatt
    13741 tccatttttg ccattgaatt gcgactacca tcatttgctt gccaactgga gccggtatcg
    13801 taaattaccg ctttattttg ttgataaatg aacgccattg ccagcccttg cccaacatca
    13861 aacataatcc attctgtttg ggtttgatta aagagcttag ggagataaaa actcagattg
    13921 aacaataggg ataccgctac tgcacttaac cactttttat aagatagccg atataatttg
    13981 caatacagca atactaaaac caataaattc agtgaaagta actgccactg ttgccaatgg
    14041 cttaatgcaa accacgcatt agaaaatgga tctaacagcc ataggctaaa ttgagcaaga
    14101 tagtccgcca acagccacgt tgaaaacaga ttgtcggtta agagcgtaaa taaaataagc
    14161 ggtacaagca aaaagctata caacggcaca ataatcaggt tggcaagcag tgcaaaagca
    14221 gagatgccct caaaaaagta gagttgaacc ggtgagaaaa tcagccaaat accgatttgt
    14281 aagtgcaaaa gcgataacca caagcggtta aattttgtga tttttttacg atattcatcg
    14341 tttaaaaatc ggctaagagg aaaatattga taccataaaa ttaaacttgc taccgctaaa
    14401 attgagagcc aaaaactatc agaaagcagg ctcaatgggt caattaaaat cagtaacgcc
    14461 actattctcc cccaatattg ccaaggggta tagtgtcgcc gcagaacttg gcaaagcaag
    14521 acaaacgcaa tcgccagcaa cgctctggcg gtcggcacgg caaaaccggc aaaaccggct
    14581 aaatagctgt aaccaaatgc ggtgatgaag ctaactattc ttgcaaaata aagtgaaaat
    14641 ccgaccgctt gtaatgcggt aagctcgctt ttcaagcaaa gccattgcac gcctttggca
    14701 aagtaaacac caaacaacat tgccagcccg atatgcaagc ctgaaatggc aattagatgg
    14761 gcagtagcgg tttgttggaa ttgctcccag tgttctgttt tcagccacgc cctttcacca
    14821 aaagccagag ccaataaaaa gccttgcgta ggcaaagcgt ccgtttcagc tttcacttta
    14881 ttcagccaat ttgttcgcaa gctataatca gttttggcta atgtttccac cttgcgaacc
    14941 gttgctgtca tattgatatg attggcaaaa taccaacgct gtcggtcaaa attaccgata
    15001 ttgctacgag ctgaaatagg acgaagagcc agttcggctt gatagaattg attaagtaac
    15061 aacggctgtt ccgattgcca gttcaagtag atcttctcgc ctgtatttag tgtcgcaatc
    15121 gctgtttgat aatcggtttg ttttaagatt ttactgattt caaattgaac aggcgtttta
    15181 ctagcagtcg ttttttccgc attttttgca acttgaatga tctgaatata gccaatacaa
    15241 accaataagc cgagtacagc cgttaatttt gagcgtagat aaacactcaa tatcagcact
    15301 aaggttccta ttactatacc cacaaataga aacgctttag gcaaccataa aataggcaga
    15361 tgaaatagaa tcagggcaat acaaaaacgg tctaaagtca taattcggct tactttttaa
    15421 agctgagtat gccgtttatg cttaatattt tcagaataaa ttttcagatt ttcgacacag
    15481 ttcgcaaaaa tacttgaaaa aataaaggca gactttttag cctgccttat aaagaagaga
    15541 tattatgctg atttttgatc ttcagcgtaa cttactgctg cagtgaataa tacgtctgtt
    15601 gatgaattta atgcggtttc aaccgagtct tgaatcacac caatcacaaa acccacccca
    15661 attacttgag cagcaatatc gtttggaata ttaaataaac tacaggctaa tggaatcaat
    15721 aataatgaac cgcctgccac acctgatgcg ccacaagcac agattgatgc aactacgctt
    15781 aatagtagtg ctgttgcgaa atcaggttga ataccttgtg tataagctgc cgctagggtt
    15841 aatacggtta cagtaatcgc tgcacctgcc atattaatac ttgcacctaa tggaatagct
    15901 acagaagcga tctcatcacg aacgcccaaa cgcttggcta aattcatatt caccggaatg
    15961 ttggctgctg aactgcgggt aaagaatgcc gttacaccac tctctcgtaa acaggtaaat
    16021 gtaagtgggt atgggttgcg gcgaattttc caatacacta ataatggatt tagtactaat
    16081 gccacaaata acattgcgcc aactaagact actaataaac gtgcgtaatc ttcaaacgca
    16141 tcaataccat tgatggcaac agtttcagct actaaaccaa ataccccaat aggcgcaaat
    16201 gcaatcacaa ctttcacaac aaacgaaact gcgttagcta aatcatttaa gaatgctttt
    16261 gaacttgccg aaccatggcg gaatgcaatc cctaaaccga tagaccacgc aagaataccg
    16321 ataaagtttg cattacttaa tgcgactaat ggattatcaa ctaagttaaa aataacggtt
    16381 tttagaattt caccaatgcc ttgtggcggg gttaaaccgt ctgggcttgc agtaagctct
    16441 aatgtagttg ggagcataaa gcttaaaaca acagccgtta atgccgcaaa aaatgtacct
    16501 aatacataaa gcaccagaat cggctttaat ttgctatctg aaccaacttc tttatttgca
    16561 atcgcagcca aaactaatac aaatactaaa ataggcgcaa tggcacgtag tgatttcaca
    16621 aaaaattgac ctaatacacc aatgctggta gcccattctt tattaataaa tgccagcaat
    16681 acccctagca ctaaaccaat ggcgatacgt aatactaaat taccgccaag aatttttgat
    16741 gataatgatt gactcat
//
LOCUS       DANLUT010000037        16642 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLUT010000037 DANLUT010000000
VERSION     DANLUT010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16642
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(174..563)
                     /locus_tag="PXB38_000986"
     CDS             complement(174..563)
                     /locus_tag="PXB38_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL5353321.1"
                     /translation="MNISQAAEKTGLSTKQIRDYEKAGLLPVPARTQSGYRFYNEADL
                     DRLFFIGNARKVGFSLVQIAELLKLNDNPNRTSREVKQLTEQHIAELEQKINDLNEML
                     KLLRSWSRTCCGNNSPECSILNGLRDH"
     gene            637..837
                     /locus_tag="PXB38_000987"
     CDS             637..837
                     /locus_tag="PXB38_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDL5353322.1"
                     /translation="MAIKLQLDGLHCGNCVKSVEKALNDVSGVTQAIVTLENQTAVVE
                     GEVLAEDLIATVEDIGFGAKLA"
     gene            837..2981
                     /gene="cadA"
                     /locus_tag="PXB38_000988"
     CDS             837..2981
                     /gene="cadA"
                     /locus_tag="PXB38_000988"
                     /EC_number="7.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium-translocating P-type ATPase"
                     /protein_id="HDL5353323.1"
                     /translation="MTEQQLLIDGMHCAACVRRVEKALLKVENVSFASVNLADQTAFV
                     QGNANSEALIAAVTKIGFGAEILESEEERRAKLQAQTKRVLSHKRTQFIVALVAGFAL
                     MVFGFYKGMQITENNRSLWLVWSLITLATMYFSGREFFSGAYNALKNKSANMDVLVAI
                     STGTAWLYSFWLTLFPQPNAHVYFEASVMIIGFINLGKYLELKAKQRSSLALEKLLDL
                     APKQAVIFEENIAKTIPAKGIKPEMRVQALTGDRLAVDGILESGSIWVDESMLTGEAL
                     PIEKKVGDKVRAGTLVQDGSGVYIAEQVGSQTALARVIHAVRHAQSSKPPLAQFVDKV
                     AAVFVPVVVSIALFAALIWLLVGKDFAFALSIFTTVLIIACPCALGLAIPLSTIAGVA
                     RAAEFGVLVRNIQALQAGSEIDTLVFDKTGTLTTGQMEVTEVITFNNFDRNDLITLTK
                     SLEQHASHPIAKAIVKFAENYPSLDVNEIQVEKGLGIRGKVGEDRVKIGNASFVNFSE
                     KTTACTATLIYIAVNDEIIGRISVQDQLRPEAKETIQRFQAEGYQCLMLTGDRQETAD
                     YFAKELGLNGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGINDAPALAQANVGIAMHN
                     GSDIAVETADLSLMKSGLALVSQILPFSKRVLKNMKQSLLGAFIYNVVAIPVAAGMLY
                     PFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(3034..3819)
                     /gene="truA"
                     /locus_tag="PXB38_000989"
     CDS             complement(3034..3819)
                     /gene="truA"
                     /locus_tag="PXB38_000989"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL5353324.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPQTPLGPLFLAD"
     gene            complement(3892..4581)
                     /gene="folE"
                     /locus_tag="PXB38_000990"
     CDS             complement(3892..4581)
                     /gene="folE"
                     /locus_tag="PXB38_000990"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL5353325.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVAHTKDKAS
                     RRAEIQQHMQAVLELLGLDLNDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGVKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            4682..5389
                     /locus_tag="PXB38_000991"
     CDS             4682..5389
                     /locus_tag="PXB38_000991"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL5353326.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     ATWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPIAIKVERNFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFWLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(5444..6541)
                     /gene="apbC"
                     /locus_tag="PXB38_000992"
     CDS             complement(5444..6541)
                     /gene="apbC"
                     /locus_tag="PXB38_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL5353327.1"
                     /translation="MNQVNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGASGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGARVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(6538..8091)
                     /locus_tag="PXB38_000993"
     CDS             complement(6538..8091)
                     /locus_tag="PXB38_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5353328.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLMAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSTLLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPC
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANIGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSININIANQVTRALSQSELFNITPKMVDWQ
                     TLNKVRGQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTE
                     TLSAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLK
                     RNLANKDNQ"
     gene            complement(8117..8767)
                     /locus_tag="PXB38_000994"
     CDS             complement(8117..8767)
                     /locus_tag="PXB38_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL5353329.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(8889..10760)
                     /locus_tag="PXB38_000995"
     CDS             complement(8889..10760)
                     /locus_tag="PXB38_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL5353330.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNVELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            10942..11211
                     /gene="rpsO"
                     /locus_tag="PXB38_000996"
     CDS             10942..11211
                     /gene="rpsO"
                     /locus_tag="PXB38_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL5353331.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            11283..12152
                     /locus_tag="PXB38_000997"
     CDS             11283..12152
                     /locus_tag="PXB38_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL5353332.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(12242..13507)
                     /locus_tag="PXB38_000998"
     CDS             complement(12242..13507)
                     /locus_tag="PXB38_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL5353333.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(13526..14836)
                     /locus_tag="PXB38_000999"
     CDS             complement(13526..14836)
                     /locus_tag="PXB38_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL5353334.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAESFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQINKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPPSAQ"
     gene            complement(14848..15612)
                     /locus_tag="PXB38_001000"
     CDS             complement(14848..15612)
                     /locus_tag="PXB38_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL5353335.1"
                     /translation="MNVLVTRPDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(15612..16547)
                     /gene="hemC"
                     /locus_tag="PXB38_001001"
     CDS             complement(15612..16547)
                     /gene="hemC"
                     /locus_tag="PXB38_001001"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL5353336.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         4738 a         3573 c         3067 g         5264 t
ORIGIN      
        1 ttagtgaaat atgaccgctc gtatagctat ttatagcttc cactctccgc caatttttta
       61 gaaacgtcat cattgagtcc atcttattgt gaagcaaata aggttcgttt ttgattattt
      121 gtcataattt ttacctatag actaaagtca ttctatttta ctgcattttt agcttaatga
      181 tccctcaacc cattcaaaat tgaacactca ggactgttgt tgccacagca agtacggctc
      241 cagcttctga gtaatttaag catttcgttt aagtcattta ttttttgttc cagctctgca
      301 atatgttgct cggtgagctg ttttacctct cggctggtgc ggtttgggtt gtcgtttagt
      361 ttcaataatt cggcaatttg cacaagtgaa aagccgactt ttcttgcatt accaatgaag
      421 aacaatcggt ctaaatccgc ttcattataa aaacgataac ccgattgtgt gcgagctgga
      481 accgggagca gtcctgcttt ctcatagtct cgaatttgtt tggtagatag ccctgttttt
      541 tcggcggctt ggctaatgtt catattccct cttgacttta acctaaggtt aaaccttatt
      601 atatcctcga ataaccactc aacataggag aaaataatgg caatcaaatt acaattagac
      661 ggattgcatt gtggtaactg cgtgaaaagt gtcgaaaagg ctttaaatga cgtttcggga
      721 gtaacgcaag ctatcgtaac cttagaaaat caaacagcgg tagttgaagg cgaagttttg
      781 gctgaagatt taattgcaac agttgaagat attggttttg gagcgaaatt agcataatga
      841 ccgaacaaca gcttttaatt gatggaatgc actgtgctgc ttgtgttcgc cgagttgaga
      901 aagcattgct taaagtagaa aacgtcagtt ttgcctctgt taatcttgct gatcaaaccg
      961 cttttgtgca aggaaatgct aattcagaag cattaattgc cgctgttact aaaattggtt
     1021 ttggggcaga gatattagaa agcgaggaag agcgtagagc caagctgcaa gctcaaacta
     1081 aacgtgtgct aagccataag cgtacacaat ttatcgtggc tcttgttgca ggctttgcgt
     1141 tgatggtgtt tggcttttat aagggtatgc agattaccga aaacaatcgc tcgctttggc
     1201 ttgtttggtc tctcatcacg cttgctacaa tgtatttttc gggcagagaa tttttttcag
     1261 gggcttataa cgcccttaaa aataaatctg ccaatatgga cgtgttagtc gccataagca
     1321 caggcacggc ttggctttat tcattttggc ttacgctgtt tccacagcca aatgctcacg
     1381 tctattttga agcgagtgtg atgattatcg gctttatcaa tttaggcaaa taccttgaac
     1441 ttaaagccaa gcaacgctct tcccttgcat tggaaaaatt gctcgatctc gccccgaaac
     1501 aagcggtcat ttttgaagaa aatattgcaa aaactattcc agccaaaggc attaaacctg
     1561 aaatgcgagt gcaagcctta acgggtgatc gcctagcggt tgatggcatt ttagaaagtg
     1621 gctcaatttg ggttgatgaa tcaatgctga caggcgaagc cttgccgatt gagaaaaaag
     1681 taggcgataa agtccgagct ggcacgctgg tgcaagatgg ttcaggggtt tatattgccg
     1741 agcaagttgg ttctcaaact gctttagctc gtgtgattca tgccgttcgc catgcccaaa
     1801 gtagcaaacc accacttgct caatttgttg ataaagtcgc cgctgtattt gtgcctgtag
     1861 ttgtttctat tgcattattt gctgctttaa tttggcttct tgtcgggaaa gatttcgcct
     1921 ttgctctttc catttttacc accgtgctga ttattgcttg cccttgtgcc ttagggttag
     1981 ccattccgct ttcaaccatt gcaggggtag ctcgtgcggc tgaattcggt gtattagtga
     2041 gaaatattca agccttacaa gcagggagtg aaattgatac tctagttttc gataaaacag
     2101 gcacgctcac cacagggcaa atggaggtta cggaagttat taccttcaat aattttgata
     2161 gaaatgattt gattactctt accaaaagtt tagagcagca cgcctctcac cccattgcga
     2221 aagcgattgt aaaatttgcg gaaaattatc cctctcttga tgtcaatgaa attcaagtgg
     2281 agaaaggatt gggcattcga ggcaaggtgg gagaagatag agttaaaatc ggcaatgcct
     2341 catttgtaaa tttttcggaa aaaacaaccg cttgtactgc cacacttatc tatattgcag
     2401 ttaatgatga aataattggc agaatttcgg tgcaagacca acttcgccct gaagcgaaag
     2461 aaacaattca acggttccaa gctgaaggtt atcaatgcct aatgcttaca ggcgatcgcc
     2521 aagaaaccgc tgattatttt gccaaagagc tgggcttaaa tggcgtgatt gctgaagtct
     2581 tacccgaaca aaaagcggag aaaattcgag cgttgcaagc agaaggaaaa aaagtggcga
     2641 tgattggcga tggcattaat gatgccccag cccttgctca agcgaatgtg ggaattgcaa
     2701 tgcataatgg atcagatatt gcggtggaaa ccgccgatct ttctctgatg aaaagcggat
     2761 tagcacttgt aagccaaatt ttacccttct caaaacgagt gctaaaaaat atgaaacaga
     2821 gcctgctagg tgcattcatc tacaatgtgg ttgcgattcc tgtggcagca ggaatgcttt
     2881 atccgtttac tggttggctg ctcaatccaa tgattgctgc gattgcgatg acattgtcct
     2941 ccattacagt ggtgctgaat agccaaagac tgttgaaata attcaagcgg ttggatttgc
     3001 aaaaaaattt acaaactcaa ccgcttgtct taattaatcc gccaaaaaca gcggcccaag
     3061 aggtgtttgg ggaatgccga aatgttcagg gtaatgcacc tcaaccaaat atagcccctc
     3121 agctttcgct gtaggggcag ctttttcccg atcacgttgt tccagcaccc attttgccca
     3181 ttccacaggc tgcttgccct gcccgatttc gagcaacgtt cctacaatat tgcgtaccat
     3241 atgatgcaca aaggcgttgg cttgaatatc aacaatcaca taattgcctt gccgagacac
     3301 attcaaatga tgaatattcc gccacggcgt attagattga catttagcag cacggaaaga
     3361 ggaaaagtca ttctcgccca gcaaatactg ccctgcttgg tgcattttgc gttcatcaag
     3421 gggaaagtga aagtgggtaa cacctttagg taaaattgcc gaccgcagtt tttggttaaa
     3481 aataatatag cggtaacgac gggcggtggc actaaaacgg gcgtgaaaat cctcattcac
     3541 cgctaccgcc catttcaccg caatatcatc gggtaaatga gcgttagtgc cgaaacacca
     3601 gctttgtaac gggcggtttg cttgcgtttc aaaatgcacg acctgcccag tgccgtgcac
     3661 accggcatcg gttctgccgg cacaaaacac ctccaccggc gaattggcaa caaccgacaa
     3721 cgcctgctct agctgttgtt gcacgctctc taccgcttct tgtcgttgcc agccaaaata
     3781 acggctgccg tcatattcaa tacctaatgc tattttcatt tcaacctcaa gcacctgatg
     3841 caaaatataa gggcgaaaaa ttttcgcccc cacagtaatt gatatttgca attatttatt
     3901 caataaacct aaaaattctt tacgggtttc tcgatcttct aagaaaacac cgccaaatgc
     3961 agaagttacc gtatagctat tggtgtcttt tacaccacgg catttcacac aaaaatgggt
     4021 cgctttcaca taaactgcga catcgtccgt ttctaaaatg gtctgaaatg cagttaaaat
     4081 ctgttcggta aaacgctctt gcacctgcgg acgttgggca aaaaactgca cgacacggtt
     4141 gattttcgag agtccaatca cccatttttt cgggtaatag gctaccgcca ctttaccgtc
     4201 aatagtgaca aaatgatgct cacaggtaga agttaaagta atatcgtcca ccagcaccat
     4261 ttcactgact ttcattcggt tttcaatatt ggtaattttc gggaaggtag cataatcaag
     4321 cccgctgaaa atttcatcga catacatttt cgccaagcga tgaggcgttt cttccaaact
     4381 gtcatcgttc aaatctaaac cgagcaattc taaaactgcc tgcatatgct gctggatttc
     4441 tgcacggcgg ctggctttat ctttagtatg agcaacagtc ggagtttcaa tgccttttgc
     4501 caacaaggct tggcgaactt tttgagcctc cggcgaaagc gtgttttctg tgatagttaa
     4561 ttcgggcgag atcgttgtca ttggttttcc tctcaaatgt aagcggaata ttctaacaaa
     4621 ttgacatcaa aaaaaatagc tctaaaatga gctatttcag ccataaacac cctctttatt
     4681 tatgcaaaat atacagtatc tctttaatgc cgacctaatt cccgaacatc aagctgaatt
     4741 tgtgcagtct ctcttaactt gcaaaaattt tgacaattcc gaccgcttgc taggtttctc
     4801 aaaagggcga ggtgcgactt ggtttttaga tacctctgcc gaactaggta tcaatgtagt
     4861 gcttcgccat tattatcgtg gcggcttgtt cggtaaaatc atcaaagaca gttacttttt
     4921 tacccgtttt gaagccaccc gagcttataa agaatttttc ttactgcaac aaatgttagc
     4981 ttggggctta cctgtgcctc gcccaatagc gatcaaagta gaaagaaatt tttgttgcta
     5041 tcgtgccgac attatgctcg aaaagctaga aaacacacaa gatttaagca aaatcttgca
     5101 atcccattct ttatcgaacg aacaatatga gcagataggg aaactgattc gcagtctgca
     5161 taaccatcaa attcaccatt ccgacttaaa tatccataat attttgcttg gtaatgatgg
     5221 caaattttgg ctgattgatt ttgataaatg cggcattgag ccgggcgaaa attggaagca
     5281 aaataaccta gaccgcctgt tacgctcgtt taagaaagaa caagggcgat taaatatttt
     5341 cttcagcgaa gaaaattggc aggctgtttt gagaggatat actctctaag aaacaataat
     5401 ggcacaagct tagaaacttg tgccatcaaa tcatcaacat taactacttc acttcacgaa
     5461 tcataatttc agacggaatc acactgcctt gccagtaaag ttcagaagct actttttccg
     5521 ctaatgcgag gtaggcttgg ctgatttcgt gttccggagc tgccaccacc gttggcacac
     5581 cgctatctaa atcttcacgc agacgaatat gtagtggtaa ttgtgctaac actttagtgc
     5641 catatttttg ggcgattttt tccgctccgc cggtgccgaa aattgcctca tggtgtccac
     5701 agtttgagca gatatgcatt gacatatttt caatcacccc aagcactggt actgagactt
     5761 tctcaaacat tgagatccct ttaatcgcat ctaataaggc aatatcttgt ggggttgtta
     5821 ctaccaccgc accggtcacc ggaatttgct gtgaaagcgt aagctgaata tcacccgtac
     5881 ccggtggcat atcaatgacc aagtaatcca attcattcca ccaagtttca tttaaaagct
     5941 gacttaacgc actgcttgcc atcgggccac gccaaatggt ggcgttatct tcttccatta
     6001 aatagccgat agaattagat tgcaagccgt gagcggtaat cggcgtgatg tgcttgttat
     6061 caggagaagt tggacgttgg tcttttgctc ccaacatatg cggaatagat gggccgtaaa
     6121 tatccgcatc taaaatcccc actcttgccc cttgtgctcg taaggctaaa gcaagattaa
     6181 ctgaggtcgt tgatttccct accccacctt ttcctgaagt gaccgcaatg atatttttta
     6241 ccccattgac tgccgggtgt ttattcgccc gttttaaggt cgcaatttgg taatttaata
     6301 cccattttac accgcttgca cctgttactt gctttaattt agcctctgtt tcggctttta
     6361 aggtttcaaa accactgttc cacgcaaatg gcatcgtgat ttcaattcta agaatatcgc
     6421 cccctaattc tgctttttta aacgcattaa gggcaattaa atctttctgt aaagtcgggt
     6481 gggaaaattg ttgcaagatt gctttaattt caacaagttg ctgttcattt acttggttca
     6541 ttggttatcc ttgtttgcta aattgcgttt taaatctttg ctataaatta cttcgctatc
     6601 gttattcaaa tcaataccca aaagggagga aacaatccca acccgatgat ggtattgaaa
     6661 taatggcaat acggcaacat cgctataaag ctgctcgcta atttcttgaa taagtgactc
     6721 tctcgcttct gcactaagcg tttctgtttg taaacgattt aatttttgat cgactatctc
     6781 acttttatag ccggaatgat tatccgggct cattgaatga aacttctgca aaaatacaat
     6841 cggatcagga taatctgcac accagcctgc tcgtgctatc tgataatctt tttgtcccct
     6901 tactttattt aaagtctgcc aatcaaccat tttaggtgta atattaaata attctgattg
     6961 agaaagggct cgagtaactt ggttagcaat attaatatta atgctattct catcatataa
     7021 caaagtcagc tttaaaggat tataagggct aattcctgct tttgttaata gctgctcaac
     7081 cacaacagga ttccaacgct tttctctatc ttttactaag ctatgtggaa ttacagactg
     7141 actcggaacc ccatattctt gcccaatatt tgctgaagcc accattgtcc ttattgcttc
     7201 acgaatctct cgtttagcta ataatggatc atcaaaattg aactcatagt aataagagca
     7261 caaacacgga aatttcacga tattcgtttt tttatttaat aaaggattct cgacaatatc
     7321 aaaagcagag cagttttgga tagttgtaat taaatcatac tctatagttt gaaagggaat
     7381 ttcttgggtt cgagccttta acaccatttt ttgagcatct agtttctcga gacggtaaga
     7441 cgcattgctc acgaagttat ctatggttgg agcaatccct tgataagtag gtaataatgt
     7501 ggaatgtgcc agcatttcag gcaattggtg atttgggtga tttagccgaa ttctcaatgt
     7561 atgcgcattt aatgcctcta caccgagttc ttcaactgac tttatttgct cttcaatcgc
     7621 ttttgcattt tctataccca tatagatgag atatttagac aatacagaat gattttgagg
     7681 atctattaaa cgtcgccagc ttgctacaaa atcttgtgca gtcacaggtt ggccattaga
     7741 ccacacagct ttctcatcta aaataaacaa ccactctttt tcatcttcag taaaccaatt
     7801 ctgagcaatg gccggaacga catcaccttt tctgttgtag gccattaaac cgactaatag
     7861 atctcttaaa ggagcagcat ctgcagaagc tttaatttta tgtgggtcga gttgaaatac
     7921 agcagaataa attgcacgtt tgagtaaagt atcactctgc cggttttcta cccagacaga
     7981 ttgaatggat tgagggcaaa ttaattgatc acaagatgta ataagcagaa tgcaagcggt
     8041 aacttttgca atttttttta caaatgtaac cgcttgtaag gatttcaaca taaactcccc
     8101 aaaggttaat taagatttat tttacaagaa gcacaggaaa taaagttgta attcctgcca
     8161 caataatttc aattcccagc gccattaaaa tcagccccat gatacgagta acgacattag
     8221 atcctgtttt gcctaatttt ttcaccaaag gggctgaata gcggaataaa atataacaaa
     8281 ttaatgcaaa tacaataatc gcaatgctaa agccaacata gtcttcccaa gtatggtagc
     8341 gggttcccca cacaatggtt gagccaattg cccctggtcc tgccataatc ggcattgcta
     8401 atggcacgac accgatattt tcgtattcag taatatcttc atttttctct tctttatttt
     8461 gtttgtgttc acctaattta ccgctaatca tcgtcatcgc aatgcttaca atcaaaatgc
     8521 caccagctac tctaaaagag ctaagtgaaa tgctaaacgc attgagaatc agattaccaa
     8581 aatagaggct gactaataaa attactccaa tagaaacagc ggtgattaag ctggtgcgat
     8641 ttctttcccc ctcatattgg tgagcggtca tactgaaaaa aataggcaag gaaccaaaag
     8701 gattgactat agcaaataga ccaatgaaga attggaggta gatggcaaaa ttaataatga
     8761 tatccacaaa aactttctca aacaacagtg tttcgggcgc tattatatcg gttaatcaag
     8821 gtagatacaa accaaaagca cccagcctaa aggacggttg ggtgcttttt gataaaatga
     8881 aaggcttgtt agtgtgacga acgttgctgc ataaaatctt catttacctc aattgaagct
     8941 tttgcacgta gcgattgtaa gaattcatta cgtaaaatta aacgattagc ttgttcaaat
     9001 tgtggcgcca atgtcttaaa ctgttcagca ttcccttccg taatgttatc taaggcaaca
     9061 ataactacat cgcccttttg attacgtgcc atttgataag tcgttttatc ttgcgccttt
     9121 ttcattgcga aaatcgttcc agccaatacc gggttttcta cttctgcttg catataaact
     9181 aaagtttgtg gcgcattaaa tttcacgtcc actgatttcc cttcattcaa ggcttttaca
     9241 ttttcttcta ctttcgccag caacgctttt tccgcttttt ctgccttcac aaaattttca
     9301 actgctgctt ttgcttcatc aaaagtttgt ggacgttctg catcataatc actcactctc
     9361 acaaacaatg tctgtggatt tgcatcattc ccaacatcta aagcatcaga attttgttta
     9421 ttttggcgta gctctccttc aaacaaaact tttaatactt tctcattttg taaagcagta
     9481 ggtacgtttt cacgggtaaa cagatccgtt ttttgcagtt ccacattacc ggctttcgca
     9541 acttcttcaa gtgaagaatt attctcaaag gctttatttg ccatttcgcg cgcaactgta
     9601 gaatactcag ttaacactaa ttcttggcga atagtttggg caattttatc tttcacttgt
     9661 gctaactcaa tcacttgctc aggtttacgc tccaatactt tgatgatatg gtaagcatta
     9721 tccactttca ccgctgcact catctggccg gcagttaaat ttgctacagc atcttcaaaa
     9781 gctttcggga aagtgccagc ttttgcccaa cctagatcac caccattatt tgctgataaa
     9841 gtatcgctag atttgttttt tgccaaagta gcaaaatctt ccccattttt gagcgcttgc
     9901 tcaatagcct gtgcttccgc ttcactagcg acttgaatat gagctaaatg ggcttcacct
     9961 ttagttacat aatcggcttt attgcgatca tagtaagttt gaatttgctc attggtaatc
    10021 tcaactttgc tttccacatc ttttggagaa agagtaacgt actcaaccgc taatttttca
    10081 ggtgctaata atttagtttt atttgcttcg taataggctc gcaattcttg ctcggaagcg
    10141 gtctgatttt ccatttcttt tgcaactgaa aattcggcta aacgcacttc acgttgttgc
    10201 aacagtaatt ttgctaacaa tgcctgctgt gccggtacat taaaatcact attgataatc
    10261 ccctcttgta gctgggattg caacatacct tcctgcacaa tcgctgcata gccatcggca
    10321 cttaaattat tgtggcgtaa tgtttgttgg tataactcgt tactgaattt accatcttgt
    10381 tgaaacatct ggctgtttac aatttcagat ttgatttgat cagcactaat acctagtttt
    10441 aactcttttg catactggcg cagaagctct tcatcaatta atccatttaa taccgattga
    10501 ttaaattgag cagcatactc cgggctatcc attaaatccc aaaagcgact ccccagttca
    10561 acatttaatc tattttgctc acgattaagc gtgttattaa ataattgctg actaatttct
    10621 tccccattta ctttcgctac agaattatct tgtgaaatca atcctgtccc aattccaccg
    10681 attacaaatg aaatagagac taatgcaaaa ataattttaa agaccggccc atttgtccgc
    10741 tcgtgcattt tttcaatcat ttaaaaattc ctaaattact caaaaattgt cgctgattat
    10801 actctttctc aaatgagaaa taaacttgca aatttttatt gaaatttaac cgctttctct
    10861 ttaaaattca cagtccctgt cgtagctgag ttagagatcg gctattgatg tattatcaac
    10921 ccttaacaaa aggaaattaa aatgtctcta agcgtagaag caaaagcaaa aatcgttgct
    10981 gaatttggtc gtgatgcaaa agacactggt tcttctgaag ttcaaattgc attattaact
    11041 gcacaaatca accacttaca agcacacttt gctgagcata aaaaagatca ccacggtcgt
    11101 cgcggtttat tacgtatggt ttcacgccgt cgtaaattat tagactactt aaaacgtact
    11161 gatcttgcta aatattcgga aactatcgca cgtttaggtt tacgtcgcta atttcaaata
    11221 ttagatatga gagccgagct gaaaagttcg gcttttttat aaattttatt cgaggaaaaa
    11281 atatggcttt tgcgtcatta tttacattat tagacgatat tgctgccgtg cttgatgatg
    11341 tatcgatcat gactaaagtg gctgctaaga aaacagcagg cgtaatcggt gatgatcttg
    11401 ccttaaatgc taatcaagtc agtggaaaga atgtggtgcc agaacgagaa ctaccgattg
    11461 tttgggctgt agcgaaaggc tcattaatca ataaagtgat cttgattcca ctagcgttgc
    11521 tgctatcggt ctttttaccg caggctatta tcccgctatt aatgataggc ggtgcatatt
    11581 tatgttttga aggcgtagag aaattactcc atcgtctatt acataaaaac aatcaagctc
    11641 attctgatga aaccgaaacc ctttctgaaa aagataaaat taaaggtgca attcgcaccg
    11701 attttattct atcagcagag attatcatta ttgcgttagg tgttttgcaa gactcttcaa
    11761 ccctaaccca aattttatct ctctccgcta tcggggtcgg aattaccctg tttgtttatg
    11821 gcttagttgg attaattgta aaactagatg atatcggttt atggttaatg cagaaaaaaa
    11881 gcacattctc acaagcggtt ggaaaaggct tattatttgc aatgccgtgg tttatgaaag
    11941 gactttctgt gattggtact attgcgatgt tcttagtcgg tggtggtatt tttacccata
    12001 atttaccaat gattcatcac ttcgtagaac aattcggtat ctctccccat ttttctactc
    12061 tggttgattt tgcagtgggt attgtggttg gtattattgc atgcttaatt attttacctt
    12121 tgatgaaatt attttctaaa aaggcgcact aatccccaaa agcgtagctt tggttaaagc
    12181 tagcttttta tctcttgcta taaaaaaata gcaggtttca agcctgctat ttttttaatt
    12241 attataatga gttagactca gtggctgttt gcggtaaggc taatggctca ttaactttag
    12301 actgagtagc catattcacc tgtttgagat tttcctcacg aatacggttt gccattaatg
    12361 tatcccccat ctgctctgcc acgtgcagtg ccataatacg atcatcagca acacattcat
    12421 catgagccaa taacaattca aactgagact tcgctttttg gtattgccca tctcgtgtat
    12481 aaatatagcc aagcgctcta gcataatcat cggtatattt aacattcgct ttatctgccc
    12541 gttttgctaa tacttttagt agcttactgt cagaatcaat ttgtaaacgg gttaattgca
    12601 caaataaacc ttgtaattgc tcatcttcaa atttcttcaa cgtttctaaa gcaatttctt
    12661 gtgcagattg atgatcgtca ctatcaatta aacgcttgat gacaccgaca cgactataca
    12721 ccgatttacg acgacgattt ggttggtttt cccaccaaga aagcaagcct tcctgccctt
    12781 cttcctgtaa acgctcatct tgtaaaccat catcaacgaa atactctaac tcagcatact
    12841 cttctgcagt taagaaatta cgttggccga tttcaactaa taatctatct aacgcaacat
    12901 aagctctgga ttctttataa atttgaatcg ctaagcgtaa tacctcatcg ctatgaggtg
    12961 caagctctag taggctatca atcgcagttc gggcagccgg taattttcct tgttgtaata
    13021 aaattcgggt tcgtaccaac tccactgcaa cattattcgg tccagctatt tcagttgcct
    13081 taattaaata tttatttgca gctaaatcat caccattttg ctgagcagct tccgccgctt
    13141 taattaaatt cagtacaggc tcatctgcat gttttgcatt tttactaaag agtttttccg
    13201 cttttgagta attcccttca ctcatacgca ttaaaccttc cagtgtttct tgctgagctt
    13261 ttttatgctt acgagttgag aaccagttat aagctccatt actcatacgg catattttag
    13321 tgacaatcca ttcaagtaaa taaactaccg ccattgccaa cacaaaaaaa accacaagca
    13381 ttacaatgct catttcaatc acggtagttg ctgtttcaat tctgacataa ccttgatttc
    13441 cggctaaata aggcccagag attagtccaa ctaataataa aagcatcaaa aagagcgttc
    13501 taaacataat ctattctcct ttttattatt gtgctgaagg aggcatcgca tcttgctctg
    13561 cttttacagg ctctgcttgc tctaattctt tttcagcttt tatttcgact ttctctattt
    13621 tttcaggggt tttattaatt tgctgagcaa tcacctttaa gctttgtaat gaagttggag
    13681 catccacata aatagtttgt tctgccaact catctagctc tttcaagaaa tgttgcacat
    13741 tttcatttga agtttcaaaa taacttctta cccaagagcc taccgtttgt aacgattttt
    13801 tataaagttc gctttgctgg cgaggaacag ctaaaatcgc aatttgtaaa cgcaagcgaa
    13861 tgttttcacg caaataaatt tcttgattcg gtgcaacaaa ggctttctca tctgctgcat
    13921 tacgtttcga tacacgaata aaatgatcta aaaatgaagc agcacttttt tctaaatttt
    13981 tctcccaatc cgcaagagaa tcacttactt gcccatcttg tttgctattt gaagcttgtt
    14041 cactttccaa aatcggcaaa tcatctaatt tattcgctaa atttgcgaca cgctgcatta
    14101 aggcattttg atcgatctga tgcaatgcgg ttaatgtatt taaatcagtt ttgattgcct
    14161 cacgaatgtg aatcgtattc ggtgcttttg ataaaacttg atctgcctct aacaataaat
    14221 ttttcgctgt ttcaatgtca ttatctaaca ccactttacg agccgcatta ttcaatagga
    14281 aatctgcctc agataatagc cagaatgtgt tatccgaacc agaggtatta tttagctttt
    14341 gcagttgaag ctgcaaacta ctaatttgct gggtataacc attttgggct gtttctaaag
    14401 ctttaatccg ttctaaagct ttttgatatt ccgtgaccaa ttcggcaatt tgtgcttttt
    14461 cattttcgaa atttggcatc tcaaccatag tttgagtagt aggctgattt gctttagcag
    14521 atactgcctg aatttgagat tcaacctctg caaacttttt atttgccata taatgaccag
    14581 ctccgccaac cgctaaagcc actaatagtg caactaatgc caagcccttt ccgcccgatt
    14641 tttgaacaac cacttgttct tttggcgctt tttgcatttc tgtttgaata tctttctcta
    14701 tagcttcgtt cactacatct tcctcaatct ctttttttgc aaaagattcc gctgaatcga
    14761 ccgcttgttg tgcctcttct accacctttt cagctgaatg ctctaaatgt tcagttactt
    14821 ttttagatct tgacatactc gccacctcta gttagatttg cccactttaa ataataatgt
    14881 attcatcaaa gttacattat cggctttatc cgatacccta atcttatctt cttgccagcc
    14941 catttgttta gctatctttg caatccgccg gctcactaca accagatcac attcaaataa
    15001 ccatgctcta caatctgctt tcgcttgttc ataaagtgat cttaaaattt cactactggt
    15061 gatcacaata gtatctactc ccaagcgttt acataagctg attttttcgg gaatatcatc
    15121 ggtaaccggc tctctacgat aacactccaa atattgaata gttgccccac gcaagactgc
    15181 agtttcagca agtagctcac gcccagaatc ggctcttaga attaaaatag ttttatcagt
    15241 tagattctgc atttcaggta atgccaaaac cccctcgcta ttttcaaatt ctatcggata
    15301 aatgaccgct tgttcagctt tttctgttaa atatttcgca gtccgttgcc ctaccgcaaa
    15361 atatttcaaa tctgaacgaa aatggaaccc ggtatctact aatgtttttg cagcatagtc
    15421 cactgcattc ggcgaaacaa caaatacata atcgtctgat tttagccgag aaatagccga
    15481 aggaagcaaa ggtaattctt taccggcttc aatcgtaaat agcggttgat gaatagcaaa
    15541 aatttgctgt tcattcaaca tatctaccaa ttcttgcccc cgactatccg ggcgtgtgac
    15601 caacacattc attattgtac gttttcgtta taaaccgcag ctaaaatttt atctgcacct
    15661 tgagcaagca actgttccgc caccaaaatg cctaattgct ccgcctcttg cttatgtcct
    15721 tttgccgaag cccgaataat ttgtgagcca tctaacgatc caactaacgc attaagcgtt
    15781 aattcatcgc cctctaatgt agcataacca ccaatcggca cttggcaacc gccttgcaaa
    15841 cgggtattca ttgcacgttc tgccatcacg caacaagcgg tcgaactatg gtttaatttt
    15901 gcaatgtagt tcaaaatccg ttcatcattg gctcgagtct caatccctac tgctccttga
    15961 ccagctgcgg gtaatgattg ttccacagaa atatagctac ggattcgctc ttgcaagcct
    16021 aaacgaatta agccggcaga ggctaaaata atcgcatcat actcgccatt atctaatttg
    16081 cttaagcgag tgccgacatt gcctcgcaat gatttaacct ctaaatgcgg atatttcgcc
    16141 attaattggc actgacggcg taagctcgat gtaccgacca cagcaccttt cggcaaatct
    16201 tctaacgaat ggtagttgtt cgacacaaac gcatcacggg gatcttcacg ttcacaaatc
    16261 accgcaagcc ccaagccttc gggaaagctc atcggcacat ctttcattga atgcaccgca
    16321 atatcagctc gattttctaa aagggctaat tctaactctt tcacaaacaa gccttttccg
    16381 ccaattttgg ctaatggggt gtctaaaata atatcgcctt tcgttaccat cgtaaccagt
    16441 tcgacagata attgcggaaa atgtttttct aattcgcttt ttacaaaatt tgcctgccat
    16501 aaggctaacg ggctttgacg ggttgcaatg cgtaaaatat ctttcataaa ttctaaaatt
    16561 aaaacattga gttaatgaat tatcctacca ctttttagct gaactgccaa aaataatcgt
    16621 ggatttcgct ttgcatttaa tc
//
LOCUS       DANLUT010000038        16593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLUT010000038 DANLUT010000000
VERSION     DANLUT010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..723)
                     /locus_tag="PXB38_001002"
     CDS             complement(<1..723)
                     /locus_tag="PXB38_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5353337.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKNAKDMCQDEN
                     GHYVHASGKRVLVGENKFNQPVT"
     gene            complement(822..971)
                     /locus_tag="PXB38_001003"
     CDS             complement(822..971)
                     /locus_tag="PXB38_001003"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353338.1"
                     /translation="MPNSTAQHSTAQHSTAQHSTAQHSTAQHSTAQHSTALPTFRLKI
                     NNFLN"
     gene            complement(1158..2033)
                     /gene="ubiA"
                     /locus_tag="PXB38_001004"
     CDS             complement(1158..2033)
                     /gene="ubiA"
                     /locus_tag="PXB38_001004"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL5353339.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(2026..2787)
                     /locus_tag="PXB38_001005"
     CDS             complement(2026..2787)
                     /locus_tag="PXB38_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL5353340.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(2854..4221)
                     /gene="purB"
                     /locus_tag="PXB38_001006"
     CDS             complement(2854..4221)
                     /gene="purB"
                     /locus_tag="PXB38_001006"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL5353341.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVMVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(4255..4884)
                     /gene="hflD"
                     /locus_tag="PXB38_001007"
     CDS             complement(4255..4884)
                     /gene="hflD"
                     /locus_tag="PXB38_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL5353342.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNMMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4992..6680)
                     /gene="cydC"
                     /locus_tag="PXB38_001008"
     CDS             complement(4992..6680)
                     /gene="cydC"
                     /locus_tag="PXB38_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL5353343.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEHQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRFENVSFAYYGEQNVLNNLSFEVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     VVRKVGLGHLLEIDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQIINLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVGWFLQQIAY"
     gene            complement(6680..8446)
                     /gene="cydD"
                     /locus_tag="PXB38_001009"
     CDS             complement(6680..8446)
                     /gene="cydD"
                     /locus_tag="PXB38_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL5353344.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMMAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQKNVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELLHNELVHQGEI"
     gene            complement(8561..12661)
                     /locus_tag="PXB38_001010"
     CDS             complement(8561..12661)
                     /locus_tag="PXB38_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL5353345.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVVEKTSEKVVEGFHQLQRKTVAQAEQVDNK
                     VDWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLN
                     VASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVK
                     LPFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPF
                     APQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQD
                     LSLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGR
                     GNSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGV
                     LGEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKL
                     QNLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVENATLLLKGNEENHSLKLSAKGNPV
                     GADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCW
                     HNRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKN
                     KQPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRL
                     STDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLL
                     HGNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDL
                     NAWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLP
                     ESAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLN
                     SNVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEA
                     IRNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSS
                     SNAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVK
                     YGVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(12742..14577)
                     /locus_tag="PXB38_001011"
     CDS             complement(12742..14577)
                     /locus_tag="PXB38_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL5353346.1"
                     /translation="MNTKLHFLTFCCLVAFSSMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQDKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     PHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(14589..15434)
                     /locus_tag="PXB38_001012"
                     /pseudo
     CDS             complement(14589..15434)
                     /locus_tag="PXB38_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
     gene            complement(15435..16544)
                     /locus_tag="PXB38_001013"
     CDS             complement(15435..16544)
                     /locus_tag="PXB38_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5353347.1"
                     /translation="MSFSTPFSFANNLNQIQQKIQQQTSKINEQKQKRNALQSTLKNQ
                     EVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEKQQKEKLKEQLDSAYRSGV
                     NPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKTQAALKARRDELKGQQKDH
                     QTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLENLRSNEQALKQQLEQAQR
                     EAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMPVSGNIITPFGNNWHGVVI
                     GASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISLYGYNQSISVSKGSRVQGG
                     QVIAKVGNSGGQSRSALYFGVTRKGKPINPLNLVK"
BASE COUNT         4622 a         3700 c         3112 g         5159 t
ORIGIN      
        1 tgttacaggc tgattaaatt tgttttcccc aactaatact cgttttccac ttgcgtgaac
       61 ataatgtcca ttttcatctt gacacatatc cttagcattt ttaggaatat tttcaacaaa
      121 tttccccatt tctttatttt tagcataaat aatacaaaaa tcattactta cagaaataaa
      181 tttagaattc tttctacctt tcggattatt ttcaactgat aatatggcaa caaaattctc
      241 ctccccaaac acttcatcac aaagcaattt cagctgtgcc tgttcgttat catcaattga
      301 aataaaaatc accccgtcat cacgcagtaa attttttgcg agatgcaaac gaggcaacat
      361 catattcagc cagttactgt gataatgccc attttctttg ctgttacgaa caaaggctcg
      421 tttcaatttg ccgtgttcat caacgtcgcc cactttctcc gcataatctg ctttggtatc
      481 ggcaaaactg tcgttataaa taaaatcgtt gcctgtattg tatggcgggt cgatataaat
      541 cattttgacc gaattgaagt aggatttttg cagggctttt aatacatcta aattttcacc
      601 ctcaataaag atattctgcg tattttcaaa atccacactc tcttcctcgc aaggagtgag
      661 cgttttgctg gttggggttt gtaaggtttg ataggctgtt gattttcctg cccagttgag
      721 catatagcgg tcaggttcgg tggaaaaatt atccgaaaaa agttgttgga atttgtcgaa
      781 gtcgatttta ccttcgctga aaatttcagg taaaagggat tttaattgag aaagttgttg
      841 atctttaagc gaaaagttgg caaggctgtg ctgtgctgtg ctgtgctgtg ctgtgctgtg
      901 ctgtgctgtg ctgtgctgtg ctgtgctgtg ctgtgctgtg ctgtgctgtg ctgtgctgtg
      961 ctgtttggca ttgtaatgtc ccttttttga atgtctacta caaaatggga tattttacaa
     1021 accgattgac taatgaagca agaatataat taactacaac tggatatatt ttacaaattt
     1081 cccgataaat ttcaccgctt gtagataaaa accatagata aaaaatagga gctaaacatt
     1141 tttagcccct accgtcatca gaaataaatc ccgactaaaa tcgccacgaa cacacctaag
     1201 ccgaaatagt ggttatttag aaacgcttta aagcattcgc tacgttctct ttttttggtc
     1261 agccaacatt ggtagataaa cagcgtggca cttaaggcta atacgacaaa atagccgatg
     1321 tgataatctt ttaccacgcc caataatccc aataaaatca aggtgataaa ctgtaataac
     1381 gcaataattt tattatcgta ttgagcgaat aaaattgcag tggatttaac tccaattcgt
     1441 aaatcatcgt cacgatcaac cattgcatat tgggtgtcgt aggcgactgt ccacgctaga
     1501 ttggcaaaaa acagcagcca gcattcaagt ggaagagttt ccgttaccgc accaaatgcc
     1561 atcggaatcg accaaccgaa tgccattcca agcactactt gtggcaagtg ggtaaaacgc
     1621 ttcataaagg gataaatcac cgccagaaaa actgccacaa aggaaagcag aaacgcatag
     1681 cggtttagca ttaaatcgag cagaaaagcg aacaacagca agatggcaaa aatgactttt
     1741 gcctcagtgg tggtcactct gccggtagct aatgggcgtt gagaggtgcg tttaacgtgt
     1801 ccgtcaattt ctctatcggc ataatcatta atcacacaac ctgccgcacg cataacgatt
     1861 accccaaggg taaaaatggc taaaatcgca acaggcggca ttccctctgc ggcaataaat
     1921 aacgcccata gtgtggggtg taataataat aacgtgccga tgggtttatc gaaacgcatt
     1981 aactgggcgt aggcaatcca tttttgttta gaaaaaagag tttcgttatt cattacaaat
     2041 tttgacgata acgtccgatt ggcttaaatg agtttgtaat tctaacggta aatcttgatc
     2101 tgtaaacaaa taatttactt ctttaacatt tcctaaacgt gcaatagctg tacgggtaaa
     2161 ctttgaatga tcggtcacta aaaccacttg tcgggaacat tccattaatg cacgctttac
     2221 ctgcacttcg tggtaatcgt aatcgagcat agagccgtcc atatccaccg cactaatgcc
     2281 taaaatccca aagtccaaac ggaattggtt aataaagcga accgtttctt ctccgattag
     2341 cccgccatca cttcttagcc ctccgcctgc taccgtaatt tggcaatctt cattttgcat
     2401 cagaatatga gccgcattta aattattggt aactactttt aaatttttat gcgaaagtaa
     2461 ggctaatgcc actgcttctg aagtcgtgcc aatatctaaa aataatgatg ctccatttgg
     2521 aatcagtttt gccacctgtt gggcaatcgc atttttctcg tgtgagaaaa attgcttgcg
     2581 gtgggtgtaa tcactattct ccgtattgga aggagcggct gccccaccgt gatgacggcg
     2641 aatcagatta ttttctgcca tttcattcag atcacggcga atggtttgcg gactcacatt
     2701 caattcagcc actaattgct cggtactcac atagccaagc tgattaacca gctcgatgat
     2761 ctttttgtgt ctgtttgcct gtttcatatt tcctcttttg caaataattt gcagaaaaag
     2821 accgcttgca agcggtcttt tttcagttaa attttacaat ttatcaacaa gttcaaccgc
     2881 atagccgata tagcttgccg gtgtcatctc tttcaaacga tttttttcat tttccggaat
     2941 ttccaactta tcgataaact cacgcattgc ggtttcatca acccgtttgc ctcgagtcag
     3001 ctctttaagt ttttcatacg gtttttcaat gccataacga cgcataacag tttgaattgg
     3061 ctctgccaat acttcccagt tttggttgag ttcatcacgc aagtgttgtt cattcacttc
     3121 taatttgcta atacctttta aggtggacgc ataagcaatt aacgcataac ctaaacctac
     3181 acctaaatta cgcaacacgg tggagtcagt taagtcacgc tgccagcgag aaatcggcaa
     3241 tttttgcccc aaatgagcca ttaccgcatt tgccaagcca agattgcctt cggagttttc
     3301 aaaatcaatc gggttcactt tatgtggcat tgtgctagag ccgatttcac cggcaatagt
     3361 gcgttgtttg aagtgattta aggcaatgta gccccacata tcacgatcaa aatcaattaa
     3421 aatcgtatta aaacgagcca cgcaatcaaa gaactccgca atataatcgt gcggttcaat
     3481 ttgggtggtg tatgggttcc acgtcacacc taacgattcc acaaattctt ggctgaaagt
     3541 gtgccaatca atctccggat atgccgataa atgtgcgtta tagttgccca ctgctccatt
     3601 gattttagcg agaatttcta aattttctaa ctgtttatat tggcgttgta aacgatatgc
     3661 cacatttgcc atctctttac ccattgtggt cgggcttgcc ggctgaccgt gtgtgcgaga
     3721 aagcaacgga atatgttggt aacatttcgc cagctctgct acagcatcaa tcactttttt
     3781 ccattcaggt aataatactt cttcacgagc ggttttaagc attaaagcgt gcgaagtatt
     3841 attgatatct tcagaagtac aagcaaaatg aataaattca ttcaccgctt gtaattcagg
     3901 caacgcttca catttctctt ttaggaaata ctccaccgct tttacatcgt ggttggtggt
     3961 acgttcaatc gttttaatcc gattggcatc ttctaacgaa aaatcagcca caatttggtt
     4021 taggtaatcg tttgcttttt cagaaaacac tggaacttca ttaatttgtg tatgcgatgc
     4081 caatttttgt aaccagcgaa cttccaccat cacacggaat tttaataagc caaattcact
     4141 aaaaatcgga cgaaggctcg caactttgtc ttgataacgt ccatcaatcg gggataacgc
     4201 agttaaagcg gtaagttcca ttgttttata ttctccaaat aggtaaatgt tcggttagat
     4261 ttgacgataa aatttctgtg cttggttaaa aattttcttg cgtgaaaata aaaattgcca
     4321 acggcttccg ccgacttgct gccacaaaat accggctcga ataccggcta gtagcgaggc
     4381 tcgaatttta ttctgtatat ccgggcgaac caagtaatct tgcattccca tcacgtgaat
     4441 tttcgtacct aacgggctga taatatcgct ataaatagcg gctaaattgg caatcatttg
     4501 atctgccatc atattatctt catacagggc taactggcgt tccacttgct gtaaacgctg
     4561 ggctaactgt tgttttgctt cagggttttt attgagtttt tggctaaggg cgagcaggct
     4621 tatccaataa cgtccgactt cggtatctaa tttgccgtta ccgccgccag tttgagctaa
     4681 tgcggtttct aagcccattt ttaaatggga aagatcatcg ccaaatacac ttaacgttga
     4741 ttccggctga gtgattaaca ggctttctaa agcacactta aaagcctctc tgtctgccat
     4801 gcctttatgt gcaaattgtt gcactaacgt cgccgcttgg caaacgccgg cataagcaag
     4861 ggtaatatcg tggtaatccg ccatctctgt aaaattcaat atgataaaac attagtggga
     4921 atatagcatt ttttcagctt cttttgaatg gcaaaaggca tttattctat tgaaaaataa
     4981 atgccttttc attaatacgc aatttgctgc aaaaaccatc ctaccaatcg cccattatct
     5041 attcgataaa ccacatcaaa tttatccagt ccgctttggc ggtgagtgat cataattaag
     5101 gtgcgatcac agcagtgagt caaaattagg tttataatct gctgttcggt ttctctgtcc
     5161 agtccttctg ttggctcatc aagtaagact aattcagcag aactcaggag caaacgggca
     5221 agccctaaac ggcgttgttc gccaccggaa agcggtctgc cgccctcgcc taaccataaa
     5281 ttcaagccgt ctatttcaag caaatgccct aagcctactt ttcttactac ttcttgcatt
     5341 tgctcatctg tagcttgagc attccccatt aataaattat cttttagggt ttggctaaaa
     5401 atatgcactc gttggcttaa ggtaactaat tttgagcgta acatcggctc tgaatattcg
     5461 tcaattttac aattattcag ccaaatttga ccgcttgtag ggtcgtagtt tcggtttaac
     5521 agttggaata tggtcgattt tccgctccct gttttaccta agattgccac tttctgccct
     5581 tttaatacct caaaggaaag attatttagt acgttttgct cgccgtaata agcaaagctc
     5641 acgttttcaa agcgtacaag cggttgattt tggctcaaat tttgccattc tgccttgcta
     5701 ccaaatgtta cattaggctg ttgttcggta atttcactaa tccgctcggc ggcggtaatc
     5761 acttgcccta aatgcaaaaa ggcgatacca atcggggaaa gaatctccgc cgatgccatt
     5821 acacagaaaa tcactaacgc aattaaggct tcagggtatt ttgcagtggg cacattaatc
     5881 gaagttgaaa ccaaatagat caccacacaa gtcaaaatgc cgttggataa cattatcaag
     5941 ctatttgata agccggacag tcggctttct ttgctttgag cgttcagcca ttggtgttca
     6001 gtttgctgta gtttttcgct catttggttc aagttgccaa agagtaaaaa ttctgcattt
     6061 aactgtaccc actcaataaa ttggctgcgg taatttgctc ggctttgtat tgcattacgc
     6121 cctaatttca aacccaatcg ataaaatacg gtaggaataa cggcaagcaa taccaatagt
     6181 gtgccgcaaa tgatcagcat taatggcacg gaaacaaaag aaagcccgat tgccataaat
     6241 gcaataatca tcactgcact gacaaaaggc gagactaaat tcagatatag ggtgtctaac
     6301 gtatccacat ctgccaccaa gcggtttaac aattcgctgt ttctaaagcg atttagcccg
     6361 cttggactca gtggaatcaa ttttttaaag acgctagcac gcaaattcgc caatacccga
     6421 aaagtcgcat cgtgggtgac taaacgttca aagtaacgtg aaattgtccg ccctactgcc
     6481 aaccctctca cccccgatga agggtagaaa aagttaaaaa taagcgcatt gccggctaga
     6541 aatgaggcag ctaaaaacca accggaaagg ctgagcaaac cgatacttgc cgctaatcct
     6601 aaaattgcca gcacaacacc taataatagt cgcccaaaat gggtttggta gagagcaaaa
     6661 aacgggaaca acgatttcat tagatttctc cctgatgcac taattcatta tgtaataatt
     6721 ccgcaaaaaa gccggtgtgt tctaattcag tgaaacgacc tttctgaatg atttgccctt
     6781 gtttcatcac ccaaatttca tcgcattggg ttaaatcttc cactcgatga gtaatcatta
     6841 gcgttgtttg ctctcggctg agattatgca gagcggctaa cacttgctgt tccgaatcca
     6901 tatcaaggct tgcagtcggc tcgtctaaca gtaataattc gtacgggcga agcaacgctc
     6961 gtgcaatcgc aatccgctgt gcttgcccgc cagagatacc gatattactg tcttgcactt
     7021 gatgctccaa ccctaaacgt gccacaaatt catcggcttt tgaaagctgt aatgccttgg
     7081 ctaattcaga atctgtcgca ttagggttgc ctattaaaat attctctttc aaactgccat
     7141 gcattaattg cggattttgc cccacccacg ctaatttcgc tcgccattgg cttaaattta
     7201 aatctcgcag ttcggtgccg ttaatcgtaa ccgacccttc ataaggcaag aaaccaagta
     7261 acatattcat taatgaactt tttcctgcac cactttgccc aaccaaagcg atatgttggt
     7321 gtgcattcaa ctcgaaattt aacgcttggg ttaaggcttt gccttgtggt gagaagatca
     7381 cgcaatcttt ggcttgaatc acaagcggtt gattttcaac atttttttgt aaattgccac
     7441 cttgcgtttt caccttttct tttaagaaag tttcgatatt atctgcggca ctaatcgctg
     7501 ctgccttgtc gtgataaaac acgccaagtt cacgcatcgg ttggtaaaac tcaggtgcca
     7561 tcattagaca aaagaagccg ataaataagg tcacgcccgt accataatag ccaaaatcca
     7621 gctcacctaa aaaaataaag ccaaaataga ccgccgtcac cgcaatcgat accgccgtga
     7681 aaaactccaa taccgcagag gataaaaacg ccatttttag tacgtccatc gtactgattc
     7741 ggaaatcttc ggtgctttgg tagatttgtt cagtctgctt ttccgcttgc ccaaataagc
     7801 gaatggtttc taaacctttt aatttatcta agaactgtcc gctaatacgg gaaagaatgc
     7861 cgatattacg ctgatttgcc tccactgctt tcattccggc taaaatcata aataaaggta
     7921 ataatggcat tgttgcaaat aaaatagccc ctgctgccca gttaatcggg aatacaaaac
     7981 agaggatcag taatggcact atcagcgata aaaattgctg tggcaaatag cgtgcgtaga
     8041 aattatgtag attttccacc tgctcgagca ttaaggttgc ccagctgccc gccggttttt
     8101 gttgaatgct catcggcccg actgcttcca ttttggctag aatttggcgg cgaagatgta
     8161 aacgcaaggt ttgccctgct ttgaaaccga cacgctcacg cagaaaaatg aagaatgctc
     8221 tggcagcaaa acaacagaat aagagcataa tttcaaccag aaagctattc ggtgactgct
     8281 ttccgataag cattttgtct aacattgtgg caatcagcca catctgtcca atcatacata
     8341 aactactgaa actccctaac agtatgttta agtgcatata ttttttgatg actttttgct
     8401 gacttttaag ccatttttgt aattcgcgtt ggcgttgttt ttccataatt ttgtcaattt
     8461 ttttgttttt tcaaccgctt gtaaatcggg tttgccattc tactataaag caaaaaggtt
     8521 gttaatggcg aaacattaac aacctttcat tcagccttaa ctagaatagc tcgtcaaatt
     8581 caaagcgata cattaaatct accgcttggt taatacttga gacccattgt aagtacaatc
     8641 ttggcgttaa attatagcgt aaggttaatt cggtaagcgg tgcaaaaatg cccacgccat
     8701 acttcactct gaatttaggg gcaaggctgg cacttacttc tactttggtg ttatcgccaa
     8761 tacctgcggt ggtcacgctt aaatctttga gtccgaaagt gctaccaaca tcacccacca
     8821 atttactgct ttttgataag ctcatactga gtaatgccgc tgcgactgca ttactggagc
     8881 tggtatcgcc actgctttcc aatgaacgac cagttaaaat ataggaaagt gcttcatttt
     8941 gcgacattgc cggatcagag aatactttta ccgttggatt gtctgccaaa ccggtcactc
     9001 ttaccccagc tgtaatggtc ggatcttcca ttgcctccgg attgcgtata gcttcaatat
     9061 ctaaggttgg ctgagacggt gagccggcaa aactaatatc acctttacga atcagcaagt
     9121 cttgaccata agcggcaaat cgtccttcac gcaaatgaac ttgcccgtaa agccctaaac
     9181 cttgtttgcc ttgtctgaca gacaataagc cattcacgtt actgtttaaa ccataggctt
     9241 tgagtttgac atcattaccg atgttaatct taatatctgc attaattgcc attccacctg
     9301 aggtttgagc cggaatatta cgttggctaa acggcacttt atttttcaca gagccgtcca
     9361 taatcacctc atctccactt acactgaccg cactttcagg taactgctcg acttcaattc
     9421 ttgcccaagg gatatctaca tttccactta aggttaaaag agttggcgtt gccgtcactt
     9481 gaatatccgg gctaactgcc acttttgcga tattaggaat atccacttgg aaacggttag
     9541 cttgagcgtg aacccgtgtt ttccacgcat ttagatctcg ccagtctgca tcaccctcca
     9601 aacgcagttc gctttgtttg gtttgtaatt taccgcttaa agtcgatgtt gccccgtgga
     9661 aattcattgc taaattccca cctgtaatat caaacggcat tgtaacagag cgagctttta
     9721 actctgtaac gtttagattt ccgtgcaata acggagaggt tgcggtgccg ctcacggtaa
     9781 gacgagcatt cacattgcca tcaaccgaat cgccccgttc aagtagcggt cgaatcagct
     9841 ttaagcttaa ttggtcaaga tgaatattgc cggataacgc acgagcctta cttaaatctt
     9901 tcatcactaa atcagtcgaa agtctgccgt tattttcgac ccttaaatca gatttaaggg
     9961 ttaaattatt gtcagacatt ttcagatcaa ttttaagcgg tgaaacggtg agtgggaaac
    10021 tttttccccc ctccattttt tgaataaatt taatcgcatt agaggttaaa tccagattca
    10081 cttgaggctg tttgttttta aaccaagctg catcgccttt ggcattcaca atccctgaaa
    10141 gctggctgtt tttctccaaa aattgttgca ataccgctaa atcaaagtta cggatttcaa
    10201 aaggcacttt accctcaaca ccggcattaa atgcagtcgg gaaacaaaga ttaattttcc
    10261 ggttatgcca acaatgtgcg gaaatattgg cgttaatggc tttattgtca tatttcacat
    10321 tcactgcttt atctgcttgg aattgaccaa actcggtgga ttgaatcgaa acttggctta
    10381 attgcccttc ccaaatttct ttcaaacggt caaattttcc agaaatttgc aaatcagcac
    10441 caaccggatt gccttttgca cttaatttca agctatgatt ttcttcattt ccttttagca
    10501 ataaagtggc attttccact ttgatttcat tataggcaaa ttgacgtaac cccaaggtta
    10561 aatccccttg aatggttttc tcagtggtaa ttttgccttt tgcggttaaa ttttgcagtt
    10621 taaattgctc atagcctaca tttgaggcca ctaaatctaa atcaatgtta ggttctgaaa
    10681 ccttacccga taatttggca ttaccattca cgctggcttt taaattcggc actaaccctt
    10741 gcaaattagg ggctttaata tccgcataga aatcagattt ttcgcctaac acgcctttta
    10801 aatcgatctt attttcacca tacaccagcg ataagcccgg aacatctaaa agttgttgat
    10861 gatcggcttt taaattaccg cttaagtgta gatttttctg taataacgaa cctttaatat
    10921 caatattcga gacgtccgct ttccatccgc tagctgaatt gccccgtcct gcataacctt
    10981 cggaagataa agaaccggac aataccgccg gccagtctgc cagtagggat ttagtgttaa
    11041 tatgctgaag tttcaaattt gaacgccacg caacgccctc gctccaatcc actaaaccgt
    11101 cgatcttcgc cgtaccttcc agcgtattga gacttaaatc ttgtatatta aaatgggtta
    11161 attccccttt gccagttaaa ctagccgagc ttgcaggcac gcccattcct ttggcactga
    11221 ctttagcctc caaagcgtaa tccaggagat tgccattaag cctcatggcg atattctcta
    11281 aactcagcac atcaccattt tgctgaggag caaacggata acgcattgac tcactcttca
    11341 gcgataaatc aaagggagtt ttcgcctgag ccagtgcaac attgccctcc aacgaggcgc
    11401 taattgcacc agccgtcttc acttttaggc tggttttgtc atatagctca ccggaaagag
    11461 aggcttcaat ttgattgaac ggcaatttta ctttcgccgt ttttgcctcg tgaccactta
    11521 gcgtccaact tagcggataa ttatcttgta acgataaaga accgcttgcg gttagatccc
    11581 cttggtcgct tttgaaatct aaacttttta ggttgatatg ctgatctttt gcttgagcct
    11641 gaagctgtaa agaggcaaca tttaacaatg agatcggctc aatcaaattc cctttttcat
    11701 ctttagcttt ttgagcaatc gctacattcg caatatcaat ctgttcaata ttgagatcaa
    11761 gaggcaaact aaagcgaata tttttatcca ataacggctg tgctaattgt gctttaatcg
    11821 ctgcccaatc cactttatta tccacctgtt cggcctgtgc aacagttttt ctctgtaatt
    11881 ggtgaaagcc ctctacgact ttttcactgg ttttttccac caccgcctct tgaatcactt
    11941 tatcagcaat ctcttgtgga tttgtcgctg ataacgcctc tgtttttgca tttttttgtg
    12001 caaaatcgac cgcttgttca gtatcagttt cgtctaactt taaggctaaa agcagattta
    12061 gcccctctaa ctgtgtcggg tgaacggtaa tagcccgccc tttaccagaa agtgcagtgt
    12121 ggaaatgatt aagatgaata tccatatcat caactttgac cttgatattc tctaaattga
    12181 tattttgagc tgaaatcccc aatggcaaat ttaattcggt gaaaggttcg gtctcttctt
    12241 ttggctgaga agggggtaat ttagtcgtat caatcaacac ctctgtatct ttaaggctga
    12301 gattattcaa acacatttca tagtggagca agcagctaaa accaatatgc agatctgctt
    12361 gcccaaccgt tacattcaca ccgtccatca caaatcgggc atcagaaagc tgtaacccat
    12421 cttgcaggct accttgcact tgcccaagtt gtaatggctc tacgaattta tctacccagc
    12481 ttaacacttt acgttgcccg taacctgtgc atagaaagag aatggcgagt aaaagtagaa
    12541 taaacgtcag acaaaagccg tgcttcaaaa accgccactt tgatttttta ggctgtgttg
    12601 cttgtggctc ttgtgctgag tccgtttgat ttgtggctgt ttgtttattt tcgtcagtca
    12661 taatcgtgca tatttatgag gtgataaaaa gtaaacaagc ggtatgcgaa attttactga
    12721 aattcgaccg cttgttttca tttacagatc ggaacctaaa ccaatataaa tttgtattcc
    12781 tttggaatta tctggtgatt ttaccggcgt ggcgacatca aatttaatcg ccccgatagg
    12841 tgatgcccaa cgcaccccta agcccgtacc gtagtagaga tcctgagttt tgaatttatt
    12901 cgatgccaag cctgcatcat aaaaaattgc accccaccaa ttagggtaaa cctgatactg
    12961 atattctact gtgcctgtgg ctaaatgaga gcctccgaca cgtttgccat tactcggatc
    13021 acgaggggaa atatccttat agccaaagcc ccgcacactc atatcgccac cggcaaaata
    13081 gcgtaacgcc ggtggaatac gttcaaattg attggctttc aaatacccca actccgccct
    13141 taaatagaac cgatggttat caaagtaagt tctcgcccaa gatgtcgagg ctttataact
    13201 ataaaagttt acatctgaac ctactgcacg actcccccag tttaccgtta atttttgtgt
    13261 atccccccat aatgggtaag gcttgccatc tgttctggtt cgattcaatg atgccgttgg
    13321 gtaaactaat aaggttttaa atcgatcatt agcttgagta aaagaatcgt aacgggcttt
    13381 taaaccaaca gaaaatgacc aaccggtttc gtgagtccag aaacgttgta agccaagggt
    13441 ggcagcggtt gattttgtat cgttttgatc ttcgttttct aaagtgccgg ataattggta
    13501 ataataatgt agcggatctt ctctaagtgg aatattataa ccaaattcaa atgtctgctc
    13561 cggcttagaa acgtacgttc ggctttcaat actatgacct cggctattta accaaggttt
    13621 cttccagtta agctgtaacc ttgggccaac ttcagtttcg tagcctatcc caatttccac
    13681 ttcattgcgt tttttaggct gaaataacac atttaaatcc actaatttat cctgttcatt
    13741 taaatgtggc tcaaccatca ctgatgaaaa ccaattactg gaaaggtaat cttgggttaa
    13801 aatcgaaaga tcgttagcta aatatggctc accggaatga attttaagaa tattttgcaa
    13861 atattcttct ttgatttggc tatcaacaaa ccggatttgt ccataatggt atcgttttcc
    13921 gctatcatag cctaaacgcc aatccgcttt atgatcggtc ggataaactt ccaaacggtg
    13981 ataaagccaa tgaccgtcaa aatacccttt actaaaagcg gtactttcaa tatcaccttt
    14041 aaaattatca taggttttat ggtttaaacg actaccttgt tttggggctt tactgactag
    14101 atgagcgaaa tcttcgtccg tttttgcatc gccttgcaaa acaatatcgg tttcatcaat
    14161 ttttaccgtc tctttatcta gctcaacatt taatactaag agcggtttct ttccctcctg
    14221 aggtagctgc acaaattggt atcggctatt ataatagccc aaggctctca gagctttatc
    14281 tactgtggtt tgcaccaaat attgataacg ctctgaacca tctgcatatt cattggcaat
    14341 ttgatctaaa tatagctcca catttttctt ggcatcttta tcctgaatgc ctttgacttc
    14401 taaagtgact aatggctcta tttctggctc atcatcacta tcttccgcta atttttcttg
    14461 cagattttca actcgctcac gatctacgtc agacagcctt tgctcttgat ttgcttgtgc
    14521 cattgaagaa aaagccacta aacagcagaa tgttaaaaaa tgtagttttg tattcattag
    14581 taaccttttt attcttttgg aatgccacgc aaaagcggaa tactgtcata aggcggaaca
    14641 gaacttaacg ctggctcttg ctcaaagagc ataatgaatg gtttgtcagg cactgttttt
    14701 tcattacgcc acaagtttcc aacactcacc aattcaatat cttgaggtag ttgtgctaaa
    14761 ttttgcttca gtacactaat cgtattcttg cgagggtgtc ctatcaccac ctctaccccg
    14821 ttttttcgtg cgtgattaat tgcatgtgca aactgttttt gtacatcagc aagcaatcgc
    14881 tatcatctaa aaaaatgtct ctctccagcg tattaatacc aaattgacga gccgttttag
    14941 ccgccacact actgccaata gttttactgt ctaaaaagaa aagcgtattt tcttttaaca
    15001 ctttcatcaa atgttgcatt gtagcagagt ctgaagttgc gccactgccc atatggttat
    15061 ttaaaccaat agcatatggt acttgaccac gagaagtatg aataagtttc cgaattttct
    15121 cttcgttatc accaatatga ataccccccc tcttcaattg gctgtttcga tttaggttcc
    15181 attggcaaat gaatcaaaat atcccgtttt tggttataag cgtcctttgc ccgttctgtt
    15241 gcatagggtg caacaggaat aatcgccacg cttaccgcct tgggtaaggc taagatttct
    15301 cgatcttctt ttattcgata gcccacatca tcaattacaa tcgccatttg agctgcttgt
    15361 acaagcggtg taaaaagcac aaacatttgc aaaaaaatgt taaaattcaa ccgcttgtca
    15421 atttgtttaa acatctattt caccaaattt agaggattaa tcggcttgcc tttacgggta
    15481 acaccaaaat agagtgcaga acggctttgt cccccactgt taccaacctt cgcaataacc
    15541 tgtccgcctt gcactcggct acccttgctg actgaaatag attggttata gccataaagg
    15601 gaaatatcac cattgccgtg gtcaatcgca accatattgc cataccctgc aagccattga
    15661 gccattatga ctcgcccgct cgccattgct ctaaccgaag taccggcaga agcaccaatc
    15721 actacaccgt gccaattatt accaaaagga gtgataatat tgccagacac cggcatcgta
    15781 tatcgaccag ccttgatcgg tgttctctca acattctcag ttgttttgga ctgaccggat
    15841 tttgcctgtt tttcccgctg ttgttcacgt ttttctgctt gctgagcctc tctttgcgct
    15901 tgttctaatt gttgttttag tgcctgttca ttgctgcgta aattctctaa tcggctttga
    15961 tcctgctcaa gcgttttatc gattaaacgt aaggtacttt cacgctggct ttgtactttc
    16021 tttaaatctt tctcttgttt cttttgttca ttaagttgcg tttgatgatc tttttgctgg
    16081 cctttcaatt catcacgtct ggctttaaga gcagcttggg ttttacgaat ttcaacaatc
    16141 gcatcaatgc gaatattatt catatgctga taataagcgg tcattctttc cgcatttttt
    16201 gcctcttcag acattaaacg ctctaagacc gaagggttca ccccagaacg gtaggcagag
    16261 tccaactgct cttttaattt ttctttctgc tgtttttcca acttttctaa acgggcaatt
    16321 tcagtctcag tcgctttaat ggtctggcga acttccgtta aagacatttc ggttttttgt
    16381 aatttatcca acaccttccc catttctact tcttggtttt ttagggtaga ttgcaacgca
    16441 ttacgttttt gcttttgttc attaattttt gaggtttgct gttggatttt ttgctgaatc
    16501 tgattaagat tatttgcaaa agaaaaaggg gtagaaaagc ttattacccc actgaaaata
    16561 gcagtccaac agtaagaatt tattcgtttc acc
//
LOCUS       DANLUT010000039        16576 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLUT010000039 DANLUT010000000
VERSION     DANLUT010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16576
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(60..2162)
                     /gene="fusA"
                     /locus_tag="PXB38_001014"
     CDS             complement(60..2162)
                     /gene="fusA"
                     /locus_tag="PXB38_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL5353348.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            complement(2264..2734)
                     /gene="rpsG"
                     /locus_tag="PXB38_001015"
     CDS             complement(2264..2734)
                     /gene="rpsG"
                     /locus_tag="PXB38_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL5353349.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLAQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            complement(2865..3239)
                     /gene="rpsL"
                     /locus_tag="PXB38_001016"
     CDS             complement(2865..3239)
                     /gene="rpsL"
                     /locus_tag="PXB38_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL5353350.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            complement(3360..4319)
                     /gene="rfaC"
                     /locus_tag="PXB38_001017"
     CDS             complement(3360..4319)
                     /gene="rfaC"
                     /locus_tag="PXB38_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL5353351.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVEWQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            complement(4387..5421)
                     /gene="waaF"
                     /locus_tag="PXB38_001018"
     CDS             complement(4387..5421)
                     /gene="waaF"
                     /locus_tag="PXB38_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL5353352.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCRPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYATLAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAVIIRLIEGGLIKIRKEGAEGYHQSLIDIQPEM
                     VMDKLAELLI"
     gene            complement(5532..5894)
                     /locus_tag="PXB38_001019"
     CDS             complement(5532..5894)
                     /locus_tag="PXB38_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL5353353.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKEPVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            complement(6008..7282)
                     /locus_tag="PXB38_001020"
     CDS             complement(6008..7282)
                     /locus_tag="PXB38_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL5353354.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKAPGHTFTPIMKRPDAKVE
                     DHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTASFNTVEAQENVEKEV
                     VKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPKTRRLLLVALLALALL
                     VLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKHAEEQARAEQEAAEAAKAQE
                     QAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVAVKPVENKPVVAQPAI
                     KPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKTAAKPVEKAPTKTEAV
                     KAAPAAESANAVATKTMTVPKDVSLMQVFRDNNLNISDVNAMSKVNNVVSNLKVGERV
                     TVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            7575..7913
                     /locus_tag="PXB38_001021"
     CDS             7575..7913
                     /locus_tag="PXB38_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL5353355.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            8078..8971
                     /gene="psd"
                     /locus_tag="PXB38_001022"
     CDS             8078..8971
                     /gene="psd"
                     /locus_tag="PXB38_001022"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5353356.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPADGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            9043..11394
                     /locus_tag="PXB38_001023"
     CDS             9043..11394
                     /locus_tag="PXB38_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5353357.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            11442..12911
                     /locus_tag="PXB38_001024"
     CDS             11442..12911
                     /locus_tag="PXB38_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5353358.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEISDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            12924..14585
                     /locus_tag="PXB38_001025"
     CDS             12924..14585
                     /locus_tag="PXB38_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5353359.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGKNFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            14791..16311
                     /locus_tag="PXB38_001026"
     CDS             14791..16311
                     /locus_tag="PXB38_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5353360.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTADKAPYTIEPPFEIPESWVWVRLGDICLKITDGTHHSPPNIDKGDFL
                     YITAKNIKKDGLDLSKISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNE
                     PFSMLSSVALIKTSQEIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVP
                     VPPLLEQQRIVQKIEELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQ
                     DPNDELASCLIERIKAEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIKAGQERCIADEV
                     PFEIPQNWIWVRLGEVGDWSSGATPNRHNPEYYNGTIPWLKTGDLNNGIISSIPEFIT
                     DKALQECSVRLNPVGSVLIAMYGATIGKLGILKIAATTNQACCACIPFNGIYNKFLFY
                     YLMSQKAEFQKKSEGSGQPNISKEKIINYLFPLPPIHEQHRIVQKIEQLFAEIEKL"
BASE COUNT         5056 a         3425 c         3198 g         4897 t
ORIGIN      
        1 tttaatatct tcctaaaaaa tgagccatag ccctattgct atggctcagg ttaaacaaat
       61 tattttctac gagcttcaat aattgcatca gcaacgtttt tcggtgcttc agcatatttt
      121 aaaggttcca tagagtatga tgcacgacct tgagtttgtg aacgtaagtc tgttgcataa
      181 ccaaacattt ctgaaagtgg aacttcagca ttgatcttaa caacgaactc gttcgcttct
      241 tgaccgttaa ccattgcacg acgacggctt aagtcaccga ttacatcacc cacgtaatcc
      301 ggtggagttt caacttccac tttcatgatt ggctcaagta ataccgggct tgcttttgcg
      361 aacgccgctt taaatgctaa tgatgcagca agtttaaacg caagttcaga tgagtcaaca
      421 tcgtggtatg aaccgaagtg taaacgcaca cctaaatcta ctaccgggta acctgctaac
      481 ggaccagatt taagctgttc ttggatacct ttatcaaccg caggaatgta ttcaccaggg
      541 attacaccac ctttgatctc gtttacaaac tcataacccg gaccttcagc atctaatggg
      601 tataagtcga tcacaacgtg accatattga ccacgaccac cagattgttt tgcgtgttta
      661 ccttcaacat cattaacacg agtacggata gtttcacggt aagatacttg tggtttaccg
      721 atatttgctt ccactttaaa ctcacgtttc atacggtcaa cgatgatgtc taagtgtaac
      781 tcacccatac ctgaaatgat cgtttcacca gattcttcat ctgtgtgaac acggaatgaa
      841 gggtcttctt gtgctaaacg acctaaagct aagcccattt tctcttggtc agctttggtt
      901 tttggttcaa ccgcaacaga gattaccggc tcagggaatt ccatacgctc aagaatgatt
      961 ggtgcatcga ttgcacataa tgtgtcacct gtaccaacat cttttaaacc gattgctgca
     1021 gcgatatcgc ccgcacgaac ttctttgatc tcttcacgtt tgtttgcgtg catctgtacg
     1081 atacgaccaa aacgttcacg tttttgtttt actgagttgt aaactgtatc accagagtta
     1141 attacaccag agtaaacacg gaagaaggtt aagttaccta cgaatgggtc tgttgcaatt
     1201 ttgaatgcta atgaagcaaa tggctcatcg tcgcttgcgt gacgctcacc ttcagtttca
     1261 tcttcattga tacctttaat tgcaggaata tcagttggtg ccggtaagta atcgattacc
     1321 gcatcaagca ttgcttgtac acctttgttt ttaaatgcag aaccacagca aacagggatt
     1381 acttcacctg ctaatacacg ttgacgtaat gctgctttga tttcatcttc agttaattct
     1441 tcaccagaga agaatttttc cattaattct tcagaagctt cagctgctgc ttcaacaagc
     1501 attgcacggt gttcttcaca agcttcaagc atatctgccg gaatatcttc ataagtgaag
     1561 gtcatacctt gatcagcttc gttccagttg attgctttca ttttgattaa atcaacaaca
     1621 cctttgaagc tgtcttctgc accgattgga agttgtaatg caactgagtt accacctaaa
     1681 cgcgttttga tttgctcaac aacacgtaag aagtttgcac ctgtacggtc cattttgttt
     1741 acgaacgcga tacgtggcac tttatatttg ttagcttgac gccatacagt ttcagattgt
     1801 ggttgaacac caccaactgc acaataaacc atcaccgcac catcaagtac acgcattgaa
     1861 cgttctactt cgatagtaaa gtcaacgtgt cccggagtat caataacgtt gatacggtgt
     1921 tgtggatatt gttgtgacat accagaccag aatgctgttg ttgcagcaga tgtgatcgtg
     1981 ataccacgct cttgttcttg ttccatccag tccattgttg cagcaccatc gtgaacttca
     2041 ccgattttgt gacttacacc tgtatagaac aagatacgct ctgtagtagt tgttttaccc
     2101 gcatcgatgt gcgcactgat accgatgtta cggtaaagtg aaataggggt tgtacgagcc
     2161 atttttattt attaccttgt ttggggttta aattaaaatt cttaataagg gtaaggcttc
     2221 accgcaaact gagatgaagc cttctataag cttacttaaa cgattaccaa cggaagtgag
     2281 caaacgcttt gttagcttca gccatacggt gaacgtcttc acgtttcttc actgctgaac
     2341 ctttgttgtc tgctgcatcc gataattcgt tagctaaacg taatgccatt gatttgtcac
     2401 cacgtttacg agcggcttct acgatccaac gcattgctaa agcattacga cgggttgggc
     2461 gaacttctac aggaacttgg taagtagaac cacccacacg gcgagattta acctcaacag
     2521 ttggacgtac gttttctaat gcgatttcga aagcttctaa cgcttcttta ccagaacgtt
     2581 gtgctaaagt ttctaatgca ccgtaaacga ttttttctgc agtagatttt ttaccatcta
     2641 ccattaacac gttaataaat tttgcaagta attctgaacc gaacttcgga tctggaagaa
     2701 ttttgcgtgg ttcaatacta cgacgacgtg gcattggaaa tttctccgta tattaaatct
     2761 tcaggatatc caaaactcat ctaatctgcc ttaaggcatc ttgactggag tttatggttt
     2821 aaatattaaa atttagacgt ttggccttac tcaacggaga accattaagc tttaggacgt
     2881 ttaacgccgt atttagaacg accttgttta cgatctttaa cgcctgcaca gtcaagtgca
     2941 ccacgtacag tatggtaacg aacacccggt aagtctttaa cacgaccacc acggattaat
     3001 acaacactgt gttcttgaag gttgtgacct tcaccaccga tgtatgaagt tacttcaaag
     3061 ccatttgtta aacgaatacg acatacttta cgtaatgctg agttcggttt tttaggtgta
     3121 gtagtgtata cacgagtaca cacgccacgt ttctgcgggc aagcctctaa tgcaggaacg
     3181 ttacttttta caaccttttt cacacgcggt ttgcgtacta gctggttgat agttgccatt
     3241 aaaaaagctc cagttaaaat tattaaaaat aaaattaaaa acatcctttc acacgaaagg
     3301 acggcaaatt ttaaattgaa tgtggataaa agtcaagcac agtaagataa caacaacgat
     3361 catttgttaa tcaatggaag taatttttcc agcacttgtg aagaggtaat attttccatt
     3421 ttatctgctt ttagataaaa ctgattttgc ccgtaagccc cgataagttt tggatcggtt
     3481 gccccatata aaatcacatt tggcttatct aacgcagccg ccaaatggct caagccggta
     3541 tccaccgaca ccactgccgc tgctcccgca agttgagtag caatatcggt taagctcatt
     3601 tttggcaata ccttagcatt attcgccaca ctcgctaaac gctccgcccg ttctttttcg
     3661 gcttggtttc cccaaggcaa tctgactgcc agattgtgct tatccaacgc ttgaatcaac
     3721 tccgcccaat aggcttcttg ccaatgttta tccgctcggg tagtggcgtg aatcagcata
     3781 atgtaagcgg tcgttttttg aggatttttt gcaaaatgtt gtgcaatgca ataatcgccc
     3841 cgttcggttg gcaaagcata acctaatgat tttgcacata attttctgat gcgttctaca
     3901 gcgtgttgtt ggtaggggat attaaacgtt tcatcgtaaa acagactact taacccttct
     3961 cgggcagagt ttttatcata gccaaatttt ttgcctttgg cttggcgagt tactaacacc
     4021 gcacttttaa tcagcccttg agcatcaatt accgcatcat actgctcact ttttagctgt
     4081 tttaaaaact gctgccattc tacccaagtc tgtctttggc aaaggttttt ccgccagcgg
     4141 cgaatagcca ccggaattac tttatttacc gctgaatgcc acgcaggaat ttcggtaaaa
     4201 ttctcctcca ctacccaatc tacttttaaa tcgggaatag cattttgcat atcggttatg
     4261 gctggaagcg tatgtaatac atctcccatt gatgaggttt taacgattaa aattttcatc
     4321 ttttataaac aaacaagcgg tctttttttg caaaaaattg gcaaaattca accgcttgtt
     4381 atccatttaa attaacagtt cagctaattt gtccatcacc atttcaggct gaatatcaat
     4441 taaactttgg tgatagccct ctgccccttc tttgcggatt ttaatcaaac cgccttcaat
     4501 taagcgaatg atcacggcat tttgggataa cggcggcgta tattgtgggc tggtcggtcc
     4561 atataaggcg accagcggtt tatttagtgc tgcggcaatg tgcattaagc cggagtcatt
     4621 gctcacgact gcattacaat ctgcaatcaa atctaccgct tggtttaaat cggtttgccc
     4681 ggctaaattc aggcaatagc gttgtaaatt ttcaggtaat gccaagcgaa tttgctcacc
     4741 ggcggcttca tcttttttcg agccaaataa ccgtaccgaa tagccttgct caatcaacat
     4801 ttttgccaat gttgcataat gataatgcgg ccaacgtttt gccggtccaa attcagcccc
     4861 cggacaaaag ccgatggcag gacggttttc cgcataagcc aactgttttt caaatttcgc
     4921 tttggtctgc tcaatttgtt cgctatcagt tgtgaggtat ggataagcaa tcggcaactg
     4981 ttgtgcggtt ggaacagtag ccttttcaaa cgccaaggct acatagcgtt gcaccatcat
     5041 tgggtagtcg tttttattac tgcgaagatc atttaagaaa aaatatctac tttccccttt
     5101 ccaaccacga cgtctcgcaa ttttcgcaaa cagtggaata aaggcagact ttaatgaatt
     5161 aggcaataca atcgccatat catattgatt tctcagggat tttccgagtc ggtagcgttc
     5221 acacaaacga aatgaaccgt gtccaatcgg cattgaaatc gcattacgca cctcaggcat
     5281 acgggctaaa agcggacgac accaatcggg tgccattaca tcaatttggc aattcggata
     5341 ctgtatttta agctgttgat aaagtgcgtg cgacatcatc atatcaccca cccaagacgg
     5401 tcctataact aaaatattca tttgcaaaat tctcttaaaa atttattcac aatccttgta
     5461 aggattgttc acagcttcgc tgccgttggc aaagccaacg ttcaaaaagc gatacttttt
     5521 gtgtccgctt gttactgctt tatgcaattt gccgctaacg tttttttagt gttgttatac
     5581 aaaaatgctt taccactacg ggtttcatgc caagtccaac ggatattagt gtatttttta
     5641 ccatctctcg ttacagaagg tgaaagctga tgcgttgtcc cttgataact cactgtgact
     5701 atttcctttt ttaacgcttt ttttgttcgt ccctggcgtt caacttcaac cttcttatca
     5761 ttctcacaac gatataaact cactttaggt gcttgcgcta tcagtttagt cactttcttt
     5821 actggctctt tttccttttg tacttgatga atttgctcaa caggggtaac cactgtacta
     5881 caagcaacta acatcgctga gcttagcgtt aagtagataa gtttgtaaga ggggcaaaat
     5941 aaattcatcc tttatctcct ttttaaataa aagagcaacg tttgtagcgt tgctcttttt
     6001 cttcatttta tttaaaagta tagctaccgt ttgcttgacg ggtaaatttg ccgcctgagc
     6061 caatgctcat ttcaaccaca cggttatttt tatctaaacg aacggttact cgctcgccta
     6121 cttttaaatt actcaccacg ttattgactt tgctcatcgc attaacgtct gagatattta
     6181 aattgttatc acggaacact tgcattagtg atacatcttt tggcacagtc attgttttgg
     6241 ttgctaccgc atttgccgac tcggcagccg gtgctgcttt taccgcttca gtttttgtcg
     6301 gagctttctc aaccggttta gctgctgttt ttgccgtttc ttttgctgcc agtgtagcac
     6361 gttcggtttt cacttcagtt ttagcagggg ctttaggctg ttgttttacc gttgtttcag
     6421 gttggaacac cacgctattt tccgttttag gcttaatcgc cggttgtgca acaaccggtt
     6481 tattttccac cggtttcacc gcaacaggtt gctcaactac tgcttgtgat tgtgtttgcg
     6541 actggctatc ttgtgacggt ttagccattg tttgctcggt ttgggctgga gcaactgtta
     6601 cagactcttg ttgagcggct tgagcttgtt cttgagcttt tgcagcttca gcggcttctt
     6661 gttctgcacg agcttgttct tccgcatgtt tcgcttcagc ttcatcaacc ggtcggaatt
     6721 caatcggcaa gctaccacct tgctgagatt gtagctcttc gacagtttcc ggcgtacttg
     6781 gttttaacaa gaaaaacagt accaataatg ctaacgccaa caatgccact aataataaac
     6841 ggcgggtttt aggtggcatt ttagctttaa tctctttggt tttagtggct gcagctgccg
     6901 cagtggctgc tgcggcagct gttgccgcat ttggaataat acgctcagta gtgaaactct
     6961 cgggtgcagg tttaaccact tctttttcca cattttcttg tgcttcaacc gtgttaaaag
     7021 atgcggttga tacactttct tcaaccgaat gaatggtatt atccggctct actgcttctg
     7081 tagcttctga acttggagta aattggaatt cttttgcctg cttagccgaa aagacatcag
     7141 ccgtatgatc ttctacttta gcatcaggtc ttttcataat tggggtaaac gtatgccccg
     7201 gtgctttggt tgcttcagcg tcttgagagg taaccgaaga ttcaccaaaa accggttctt
     7261 tgcgaaaatt attttgtgtc atattaattc caaataatag cgttgttaat gagtataaaa
     7321 atggcgatat tctaaagcaa ttcagccgct atttgaattt atttaactaa atttacgcaa
     7381 ctagcggtca tttttgccta attttttgca aatctattta ctttcattga atttcagacc
     7441 aaatgcaagt ctagaagttt agccattttc tattttttcg atctgtgtcg aaaaatttat
     7501 ttttgccggt tgagttctat tttattccct cttaatcttc ctttcgacct ttcaacaact
     7561 aataaggaaa tcctatgaag aaaatcaaac aacttggtct aacattcttg tttggcttaa
     7621 atgcaatggc ttttgcccaa acaccgccaa ctacaatgcc tgttgaacaa aatgcagtca
     7681 ctcaacccgt acagcaaaca caaatcacca acgccaatgc ggtaaatatc aatactgcta
     7741 gtgctgctga attgcaagac aagctagtgg gaattgggca gaaaaaagct caagcgattg
     7801 tcgattaccg tactaaaaac ggcaatttta aaaacattga gcaacttgct gaagtctccg
     7861 gaattgggca agcaacggta gaaaaaaatc gagccaatat tattttagaa taagacaacc
     7921 aaattgttga agtggaattc ctacaaagcc cctatctgtt tttttctttg tagccacttc
     7981 aacaccttaa agatttttta tctattttgc attgtatttg ctatacttcg cccccaatta
     8041 aacgcaaatt ctcgttttta aataaaagga aaacgcaatg caattaaaaa aatatccagt
     8101 tccaacctat ttccaacgtg tgaaaatcgc tctgcactat ttactgccac aactggcaat
     8161 tacccgtgcg gcaggttggt tagcagagca aaaatggggc gtagttactc accttatcat
     8221 caaactgttt gcaaaacagt ataaagtcaa tttatctgaa gctaaaaaaa ccgagccgtc
     8281 agattatgct acttttaatg aattttttat ccgtgaatta aaagaaaacg cacgcccgat
     8341 taatcaagat ccaaatacac tttgcttacc ggcagacggt aaagtcagcg aatcaggcga
     8401 aatttcggat aaccgtttat tacaagcaaa agggcatcat tttacgctag aaaccttatt
     8461 ggcaaatgat gaagaaatgg cggcaaaatt taaagacggc acatttatta ccacctactt
     8521 atcgccaact gattaccatc gtgtacatat gccgtgcgat ggaacattgc gtaaaatgat
     8581 ttatgtgccg ggcgaattgt tctccgtcaa tccgttttta gccgaacacg ttccaaactt
     8641 attcgctcgc aatgaacgtg tgatttgtga atttgacacc gcattcggac caatgctaca
     8701 gattttggtc ggtgcaacgg ttaccgcaag tatgagtacg gtttgggctg gcgtaattaa
     8761 tccgcctcga gctgatgaag tggtagtttg gaattacgaa accgaaggcg aaaaagccat
     8821 caaactccaa aaaggcgaag aaatgggagc tttccgttta ggctcaaccg taattaacct
     8881 cttcccgaaa ggtaaagtac atctcaaccc tgcacttatt gcaggaatgc aaacccgaat
     8941 gggggaagag ttgggtagaa ttatcaatta aatcctgagt taattttacc taaactgttt
     9001 gctataatct tccgataaga aactcttatc ggaaggaaaa atatgtacac acttcaagaa
     9061 ttaaagcaga tgaacgagca agaaattcgc tctcgattaa tctctcctgc aattagaaat
     9121 gcaggatggt cggatagaca aattggcgaa gagtacacat ttaaaaccaa taaacgattt
     9181 acagatgggc aagtagttgt tgatccaaaa acgacgcaaa ctaaacgcat cgaagcaaaa
     9241 cgggttgatt atctgctcta tacttccgca aatcaaaaaa ttgccgtggt cgaggccaaa
     9301 gataaccatc actcttcccg acacggctta cagcaagcaa tgacatacgc tcgattgctt
     9361 gatgtccctt ttgcatatag ctcaaatggt gatgagtttg tggaacacga ttttatcact
     9421 ggcgtacaac gaacccttcc gatgtcagca tttcctactc ccgacgaact ccaccaacgt
     9481 tgggcgaaac aatataccac cgaagagctg aaaattattc aacagcctta ttacaccagt
     9541 agcactgaca cctttaaaga gcctcgttac taccaagaaa ttgcgattaa ccgtactgtt
     9601 gaagctgtag caaaaggtca gcagaggatt ttattggtaa tggcaacagg cacgggtaaa
     9661 acctatacgg ctttccaaat tatccatcgt ttaaaaacca gtggtgcgaa aaagaaaatt
     9721 ttatttcttg ccgatcgcaa tgtactagtc gatcagccaa tgatgcaaga cttcaaaccg
     9781 tttaaagaca aaatggtgaa agtcagcaat aaaaagctcg acagtgctta tgaagtctat
     9841 cttgcacttt atcaacagct tgacggtgaa accgataacg aactgtttaa gcagttccaa
     9901 ccctctttct ttgatcttat tgtgatcgat gaatgtcatc gtggttcagc aaaagaagat
     9961 tctgactggc gtgctatttt gaagtatttc aaggacgcca cccatatcgg tatgactgca
    10021 acccccaaag aaaccgatga tgccagcaac attacctatt ttggcgagcc gatttatacc
    10081 tatagcctca aacaaggtat tgaagacggc tttcttgccc cttatcgagt gattcgtgtt
    10141 gatctggact gtgatttaaa aggctggcga ccaaccaaag gtttaaaaga tcatcaaggt
    10201 aatgagattg aagatcgcct ctatacagtc aaagatttcg attacaacat tgtgctaaat
    10261 gatcgcaccc gcttggttgc ggagagaatt tgcgaatttt tacgcaaaac cgaccgcttg
    10321 cagaaaacaa tagtcttctg tgccaacatc aaccatgcag agcgaatggt ggcagagctt
    10381 tcacgcctca atgccgatat gttgaaacac aattccaaat atgtctgcca aattacaggc
    10441 gaccaatcag gcaaaggcgt tgatttagaa gaattttgtg atgtagcaaa tgaagggaaa
    10501 gattaccctg tgattgccgt aacctctaaa ttgatgacaa caggtgtaga tagcaaaacc
    10561 tgtaagctgg ttgtacttga tgcaaacatt caatcaatga cggaatttaa acaaattatc
    10621 ggacgaggca ctcgtcttcg ccctgatttc ggcaaagaat ttttcaccat tttagatttt
    10681 cgaggcgtta ctcgcctgtt tgctgatccg gcatttgatg gtgagccggt ggtgatttta
    10741 gatgtaccgg aaaataagcc acttgtcgaa caaccgcttc ctaaacccag tgataaggac
    10801 atcattaaag accccgagct aaagccatat aaaatcccgg tagttgtcga tttcggcaca
    10861 ctcaaattac gcattttaga cgagaaagtc caatatctga atgagcaggg cgagctggtt
    10921 tctgaagata ttgatctgtt ctcaaaacgg gaaatgcaaa aagagttcgg cagttacgaa
    10981 cagttccaac agcaatggac aacaagcggt gaaattttct cgaaatttta caccgatcca
    11041 aaatggctgg cagcccttcg ccaaacacgc caattcagcc acgatgttga agactttgat
    11101 gtattaagcc acatctcctt tggcaaaaaa ccactgacta aaaccgaacg agcagaaaaa
    11161 gtgaaacaaa gtggctatgt ggagcagtat tcgcccgaaa accagcaagt tttagggttg
    11221 cttcttaatg aatatgtcaa atccggcaat caagatctga ctaaaaccga aattttaaag
    11281 acaccgcaat tcagccgttt tggaggtcta gtgtctatta ttaaaaattt cggcggtaaa
    11341 gaactctacc agaaagcggt aaaaggctta gaaaagatga tttattcgga ataacaagcg
    11401 gttattttac aacaaaattt tacagataaa caaggatcac aatgagcctc aacaacatag
    11461 taaaacgcct gcaagatgta atgcgtaacg atgcagggat taacggtgat gcccaacgca
    11521 ttgaacagat cgtctggatc ttattcttga aaatttacga tgctaaagaa caagagtggg
    11581 aactggaaaa cgatgaatat cactcaattt tgccgaattt tttacgctgg caaaattggg
    11641 cggaagataa aaaagacggc aaagcgatga ctggtgatga attactctct ttcgtcaata
    11701 acgaactttt cccgacttta aaaaatctgc ctatttcagc cgatacgccg atgaaccaac
    11761 ggattatccg tgctgctttt gaagataata acaactatat gaaaaatggg gtgttattac
    11821 gtcaggttat caatatcatt gatgaaattg attttgccca ttaccaagaa cgacacgcct
    11881 ttggcgatat ttatgaaaat atcctcaaaa gtttacaaag tgcaggtaat gcaggggaat
    11941 tttatacccc tcgcgctgta accgatttta tggtacaagc aatcaaaccg aaacttggcg
    12001 aacgcattgc cgattttgcc tgtgggacgg gtggtttttt aacttcggcg ttaaaggtat
    12061 tggaaagtca aattcaaacc ctttctgacc gcactttatt caataattct gtgtatggca
    12121 ttgagaaaaa agcccttcct cacctgcttt gtattaccaa tttattgttg cacgatattg
    12181 ataatccgaa tgtacatcac gataatgctc tagaaaaatc ggtcaaagat tacaccgaaa
    12241 atgataaatt tgatgtgatt ttgatgaatc caccttacgg aggttcagaa attgagcaaa
    12301 ttaaaaagaa tttccctacg gctttacaga gcagtgaaac cgctgatctg tttatgtcgg
    12361 taattatgta ccgcctaaaa cagaatggac gggctgcggt ggtgctgcct gacggatttt
    12421 tgttcggcac agataatgcc aaagttgcga ttaagaaaaa gctattagaa gagtttaatc
    12481 tgcatacgat tatccgctta ccgcatagtg tctttgcccc ttatacctcg attacgacta
    12541 atattctgtt ttttgataaa accgagccaa cccgtgaaac ttgggtttat cgccttgata
    12601 tgccacaggg ttataaaaat ttctccaaaa ctaaaccgat gaaattggaa catttcaacg
    12661 aagttgttga atggtgggga aatcgccaag tgattgaagt cgaagggttt gacaaagcga
    12721 aaagttttac attaaaggaa atttccgacc gtcaatacaa cctcgattta tgtggctttc
    12781 ctcacgaaga agaggaaatc cttccgcctg atgaactaat tgcagattat cagcgaaaac
    12841 gcaccgctta caatgctgat attgataaga ttctagcaga aattaccgat attttaggca
    12901 ttaaactgta ataggagcat aaaatgctga cttgggaaca tatcgaaaaa atgattgcac
    12961 atcagcaatt tatccgagaa aaggcagaaa ttgaatataa agaggcaaaa aatagtgtgc
    13021 caaaagatct ttggcatact tattcggctt ttgcaaacag caatggtggc tttattttat
    13081 taggaataaa ggaaaatgaa caaggacatt ttcctgaact gctaatttct ggtgttaatg
    13141 atcctgataa agtcattgat gaattatttt cccaatctcg tagtgaaaaa gtcagtaaat
    13201 ccttattaaa ggataatgat gtgaaaatct ttcaagttga aaataaaagc gtgattgcaa
    13261 tttatgtgaa agcagctgat attttagacc gtcctatcca tttaaatggt gattatcgac
    13321 tttcttatgt tcgtttaaat tcaggcgatc ataaactcac ctcctctgaa ctgcgttctt
    13381 tcatttcaag ctatagccaa aaagatgctg atgggagaat tgtgccttat gcttctattg
    13441 atgatatcag tttaagcaca ttggataaat acagaaatct gctgaaagcc cataacagca
    13501 catcaaaatt acttacgtta tccgatgaga aattgctgca agaaattggg gcttataaaa
    13561 aagatttagc acagaatagc gagggcatta ccaatgcagg cttattgatg tttggtaagc
    13621 actatgccat tacaagcata tttccccact tcttttttga atattacgaa gaagctggtg
    13681 atgtaaaacg ctatacatta cggattaccg attttgatct tgaagaaggc aatctctttg
    13741 aattttactt gaaaattgtg ccacttattc aagagcttgg taaagataaa catttcaaat
    13801 tagataattt aacccgtact gaggaaaatg aaattactga cgggctacgg gaagctctca
    13861 tcaatgcaat tactcacgca gattacttta acaatgttcg ccatctaaaa gtcattaaaa
    13921 ccaaagataa caaactgatt tttgaaaatg caggagtaat gttggttgat attcccacgg
    13981 ctattgcagg gcaaagatcg gaatgccgta attctattat tcataactta ttccaccgtt
    14041 tagggctatg tgagcgacaa ggacaaggcg ttcgggatat ttattcatat tggcaaagcc
    14101 gaaatttcaa ttcaccgctt ttagaaagtg aaattgatta cactaaactc accttaactt
    14161 ttcaatcagg tatgattgca gattttgagg aaaaatttac cgcttgcttt ggcaaaaatt
    14221 tctctgagtt acagcctatt caaaaagatt gcttactctt tatcgccttc aatcaaggta
    14281 aagcaatgtt tgcagaatta gcacaaaaac tgccccaata tccacgcaga aatattactt
    14341 tggcactagc acgactgaaa gaaaaaggct tactaaccag ttcggggagt ccgagaaaac
    14401 aactctatac cctagtgaat ttagaatgga taatcacaga gaaatcacaa gatgattatt
    14461 ttaatccacc tttcgaccaa cttgataaag ctagtgagag taagggcgcc cccccgaaga
    14521 aaagcaaagt gaagcaagtc aaacaattac cccagaacaa agcaaacaaa ttacccccga
    14581 agtaaatcgc ttactttcag tgttgcttga gccgatgaag agcaaagaaa ttatgaaaaa
    14641 actcaggtta aaagatgata agcatttccg tatgcagtat ttaaaacctg cactaacgct
    14701 tggtgtgatc gaaatgcaat tcccagaaaa cccaaaacac cgtaatcaaa gatactttaa
    14761 gaaataacaa ccgattattg agaataaaaa atgaaagccc aacagctaaa aaacgcaatc
    14821 ctacaactag caatccaagg caagctcgtt ccacaagatc caaatgatga accggcaagc
    14881 gaactccttt gcaaaatcca agcagaaaaa gaccgcttga ttgcagaagg aaagatcaaa
    14941 aaaaacaaaa aaactgccga taaagcccct tataccattg aaccaccttt tgagattcct
    15001 gagagttggg tgtgggtgag gttgggggat atatgcctaa aaattacaga tggaactcat
    15061 cattctcccc caaatatcga taagggtgat tttctttata ttacagctaa aaatataaag
    15121 aaagatggat tagatttatc aaaaattagc tatgtaacaa aagaaattca taatgaaatt
    15181 ttcagccgtt gtaatcctga aaagggagat attctatata ttaaagatgg agccacaact
    15241 ggagtaagta ttataaatac tcttaatgag ccatttagta tgttatccag tgttgcctta
    15301 attaagacct cacaagaaat agataatgag tacttaaatt atgtaatgaa tagtcattat
    15361 ttttataaca tttctattgg aagtatgtct ggaacaggta ttccaagaat aacattaact
    15421 aaattagaat cttatttagt cccagttccg ccactcctag aacaacagcg cattgtgcaa
    15481 aaaatcgagg aattattacc gcttgttgaa cgctacgagc aaaccgaaca gcaactcact
    15541 aaactcaaca atacattccc cgaacagctg aaaaaatcgg tgttacacgc agctattcag
    15601 ggtaaattaa ccgagcaaga tccgaatgat gaactggcat cttgcctgat tgagcggata
    15661 aaagcggaga aaaatcgtct tattgccgag aaaaaactca aaaaaccaaa aagtgtttca
    15721 gagattgtaa tgcgtgataa tttaccttat gagatcaaag caggtcagga acggtgtatc
    15781 gccgatgaag taccatttga gattcctcaa aattggattt gggtgaggtt gggggaagta
    15841 ggtgattgga gttcaggtgc aactccaaac cgacacaatc ctgaatacta taatggtacg
    15901 atcccgtggc taaaaacagg agacttaaac aacggaataa tttcatctat acctgaattt
    15961 attacagata aagcattgca ggaatgttct gtaagattaa atcctgttgg ttcagttttg
    16021 atagcaatgt atggagcgac aattggtaag cttgggatat taaaaatagc agcaacaaca
    16081 aatcaggctt gctgtgcgtg tattcctttt aatggaattt ataataaatt cttattttat
    16141 tatttgatgt cgcagaaagc agaatttcag aaaaaaagtg agggaagtgg gcaaccaaat
    16201 atatcaaagg aaaaaattat caattattta tttcctttac caccaatcca cgaacaacat
    16261 cgcattgttc aaaaaattga acaattattt gcagagattg aaaaattgta ggagtcatca
    16321 tcgctttctt gggcgtgttg gatacgccct acagtcacta aattattgat cttttatcat
    16381 atcggttttc aaccaaccta aaaggaaacc tatatgatcc atctatttga aaagcacctt
    16441 aatcaatcta atcttgctga aaatacccaa tcagcttatc tttttgcggt aaaacaatat
    16501 cacaaaaaat ttgatcagtt atctaaaatc aatttacagc gatataaggt attcttaatt
    16561 gaaaactata agcctc
//
LOCUS       DANLUT010000040        16172 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLUT010000040 DANLUT010000000
VERSION     DANLUT010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16172
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..748)
                     /locus_tag="PXB38_001027"
     CDS             complement(<1..748)
                     /locus_tag="PXB38_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5353361.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDNSSQSCIGNHSLTLLE
                     NINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVADSSKYGKYSLFRA
                     TQLDNFTQIITDKGLPIEYSQALSSNDFKLS"
     gene            complement(856..2062)
                     /locus_tag="PXB38_001028"
                     /pseudo
     CDS             complement(856..2062)
                     /locus_tag="PXB38_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
     gene            complement(2059..3057)
                     /locus_tag="PXB38_001029"
     CDS             complement(2059..3057)
                     /locus_tag="PXB38_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL5353362.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVISNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(3068..4069)
                     /gene="pdxA"
                     /locus_tag="PXB38_001030"
     CDS             complement(3068..4069)
                     /gene="pdxA"
                     /locus_tag="PXB38_001030"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL5353363.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            4503..5867
                     /locus_tag="PXB38_001031"
     CDS             4503..5867
                     /locus_tag="PXB38_001031"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL5353364.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMC
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5957..7492
                     /gene="ddc"
                     /locus_tag="PXB38_001032"
     CDS             5957..7492
                     /gene="ddc"
                     /locus_tag="PXB38_001032"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL5353365.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSQEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            7595..7963
                     /locus_tag="PXB38_001033"
     CDS             7595..7963
                     /locus_tag="PXB38_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL5353366.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQAL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSKGNKVRLYGE
                     IDKGFNKTELDVKTLTVIKP"
     gene            complement(8038..8625)
                     /locus_tag="PXB38_001034"
     CDS             complement(8038..8625)
                     /locus_tag="PXB38_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5353367.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            8801..9349
                     /gene="napF"
                     /locus_tag="PXB38_001035"
     CDS             8801..9349
                     /gene="napF"
                     /locus_tag="PXB38_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL5353368.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            9342..9608
                     /locus_tag="PXB38_001036"
     CDS             9342..9608
                     /locus_tag="PXB38_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL5353369.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            9647..12145
                     /gene="napA"
                     /locus_tag="PXB38_001037"
     CDS             9647..12145
                     /gene="napA"
                     /locus_tag="PXB38_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL5353370.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEVHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVEKSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEAEHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            12234..13139
                     /gene="napG"
                     /locus_tag="PXB38_001038"
     CDS             12234..13139
                     /gene="napG"
                     /locus_tag="PXB38_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL5353371.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGIILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCVDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            13139..14017
                     /gene="napH"
                     /locus_tag="PXB38_001039"
     CDS             13139..14017
                     /gene="napH"
                     /locus_tag="PXB38_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL5353372.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGAMLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTIILSKDCITCGRCIDVCAENV
                     FAFGSRFQGSIDVKNI"
     gene            14063..14491
                     /locus_tag="PXB38_001040"
     CDS             14063..14491
                     /locus_tag="PXB38_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL5353373.1"
                     /translation="MRKYLALILAVMSGFAMAEAPKLSGTIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            14502..15110
                     /locus_tag="PXB38_001041"
     CDS             14502..15110
                     /locus_tag="PXB38_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5353374.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FIGKVDTKEKFEAHRGEMAEREWARMKANGSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(15172..16014)
                     /gene="cpdA"
                     /locus_tag="PXB38_001042"
     CDS             complement(15172..16014)
                     /gene="cpdA"
                     /locus_tag="PXB38_001042"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL5353375.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDHNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4816 a         3146 c         3508 g         4702 t
ORIGIN      
        1 atgatagctt aaaatcatta cttgacaagg cttggctata ttcaataggt agtcctttat
       61 ctgtgataat ttgtgtaaag ttatcgagtt gagttgcacg aaataaagag tattttccat
      121 atttgctgct atcggcaacc agtacttttt gtttggcgtt ttgttggagc attcttttta
      181 aattagcttt ctcttctgta ggtgctgtaa ctcctttttc taagctccaa gaattacagc
      241 tcacaaaagc aatatcagga ttaatatttt ctaataaagt taaactatga ttaccaatac
      301 aagattgact actattatct actcgtcccc ctgtaataat taattctatt tgcttatatt
      361 cagagagtaa taaagcaata tgtagatcag ttgtaatcac tcgaagtggc atatgagcga
      421 tttttttcgc aatgcatagc gttgtagtgc cagcatctaa taaaatagaa tttcccggtg
      481 aaataagcga aacggcatat tcagctatgc gttctttttc gacaatttgc ttaaattgct
      541 tctcatttgt tgttggttga aacggtataa attggtttaa gctgacccct ccgtgtgtgc
      601 gaatcacgac gccttcttca tctaatttta ttaaatcacg gcggatagtt gcaggagaag
      661 cctcagtcac ttttaccagt tgctctacgg tagcaatatt gtggtttttt aggaatagta
      721 aaatttgttc tagacggttt ttagacatat aaactctcta atttttaact gcttttacta
      781 taagtaattt tttaaaaata agatagttaa aattaaagaa cctaaaacat tgttgcttta
      841 ggttctttgt tgttactagt tcattatatt gcttaagagt gtgttgtttc caaatcctcc
      901 agatttagtc attacagtga tgcctgagta gttgcccttt tcaatggagc ataaaggaac
      961 gcccggtact accgcatatt gtacattcat ctctgttaca ttcatttgat ctaataatgc
     1021 tgctgcacca tctccaccaa ataatataag gctatcaaat ttttcattat caaggcagaa
     1081 tttacttaaa tcagctaaat gttgagaaat ttctttagaa gtttccgtga tattggcaga
     1141 ttttgcattt acaacttttg cagggtttgc ccgaataata acatgatctc tactaaaacg
     1201 tattagagcg tttaattgta gtttcagtga atgttctgat tgcgagtagt taatcaactg
     1261 tgaaggcgaa ggattaaata caatagattt tcctcctaaa gttgaaatat attcatcaac
     1321 ttgcagttgg cttgtttcgt gaattgaggt tacgacaatt aatgctctac ctaatttaag
     1381 atttcgctct ggttgttgtt gattttggat atttttcaac ttctgtgcca atccggctga
     1441 gccaacagga ataattttat tacctatgtg atttatgact tgggcaatca ttgagagatc
     1501 ttcgtgcgtt ttagcatcaa taacgatctg tttatattca ctattttcaa tagatgcctg
     1561 caaattatcg accgtatcac acgggattac ttgagcatca ggcaatagtt tttgcataga
     1621 agatgaatgc acagggcaga taggatcttt tcctgaagca gtttcattta caggaacacc
     1681 attaacatat aaatgaccag cttctatagt tcttcccatt tctggatatg caggacaaat
     1741 aattgcttta acatcgggat ataaaccagc ccaagcttta atagcacctt caatctgata
     1801 tttaacagag cctctcattg tggaatcaat tttaaggtaa atttgcccga tactattttg
     1861 aatagcattg ctaattgcaa ttctctccaa ttgctcttga atctgtagaa acagaaatta
     1921 cttgggcttt atcaggatga atttgggcta atgccgaaac tttagttttt aagacagtgt
     1981 caaatcctga ttcagcaaac ataaccgcgg tatcatttgc accagtaagg ccatcagcaa
     2041 taactaagag tgtctctttc atagattttc tccttttata gtgtcttgtt ctaagccacc
     2101 ttgacgtttt aaaacccacg ctgcaaataa tggagctaag attgctgaaa ctaatacagc
     2161 tgcggcaatc tgtgcagtcg cagtttgaac aaaaggtgct aatgtagggt ctgcttgagc
     2221 aacaatttca ggtgtaataa tggcatttcc agcagtagtt cctgctgcaa acccgattcc
     2281 tgattgatta ccacgtctta aaattgtttt gtaaccgata aatacaagaa aacctgtaaa
     2341 gagagaagct acgataccta aaataattcc tgttgctcct ccagtaataa tagattgcag
     2401 attgattcct gttcctaatg caaaagcaaa gaaaggaatg actattgcac ctgttggttt
     2461 cattaactct gtccatttag gatctaagtt actaataacc ataccaataa taagaggaat
     2521 aacagctgca agcattaatg aaagaggaat atctgctaat cctgatacac ctaaaaatag
     2581 taaaacaaag aaaggtccat cattaacagc cgaagcgaca taagctcctt tatctctata
     2641 atcaccatat ttccctgtaa acgctaacca aataccacca tttgaatttg caacaacagt
     2701 tagcatagct aataaagaaa cgcccataac accatcatta cctacccata atcctaaaat
     2761 cacaactaaa agagcgggaa taatagtttt aaatagtaat acaacaccgg tatgggcaag
     2821 tacaggtcca gaacttctca cggtaatttg catacctgta gcgaaaatta atagtgcaat
     2881 aagtggtcct gctgatgatt tgaataaagc cgtcgtaaat gaacctaaat ttaaaaattc
     2941 aggaaagaat gtaccaataa tagaaccaag aattagcggt attaccattg caccgccagg
     3001 aattttattc ataccatcat atatcgggac gatggattta gatgtttgag tagacatatt
     3061 aatctcctta gtgtgtcgca tatttgatat ttgccatttt tgcacccaaa tagagtgctt
     3121 cagtcatact acgactatct gctgttcctt tgcctgctat tgggaaagca gttccgtgat
     3181 cgacagatgt tcgaataaat ggaagaccga cagtaacgtt tacacctgta tcaaagccta
     3241 ataatttgat agggatatgc ccttgatcgt gatacatcac aacaacaata tcgaattcat
     3301 ttaggttagc tgcacggtga aataaagtat ccggagggac aggccctgta acattaaacc
     3361 ctttggcttg agcctcttga attgcgggaa caatttcttt ttgatcttca tcgccaaaca
     3421 ttccattttc acctgaatga ggatttaaac cagcgactgc aatacgaggt tctttaaacc
     3481 caagaatgcg agcattttct tctgctaaat caataactgt agcaactcgt tctttggtaa
     3541 ttaaatcaca ggctttacga agttggacgt gagtagtaac gtgaataaca ttgagttttt
     3601 cactggttag catcattgag taatctttag tattactgag ggttgcaagg atctctgtat
     3661 ggccaggaaa tggtttacca cctgcgtgta gggcttcttt attcagtggt gctgtaacaa
     3721 tagcgtggat ttttcctccc attgctaaat taactgcctc ttcaatatat tcataagctg
     3781 cttttccagc acgcggatca acttgagcaa aaggcaaatc ttcaggcagg ttattcaaat
     3841 ctaaaatatc aataacgcca tattcggcta caaagttatc tagattattg agaattctta
     3901 atttcaattc tgaatgaaca ataggtaagg ctcgttgtat aatttttcga tcaccgatca
     3961 caacagggtg tgctaactca taaatccgtt gattagctaa tgctttaata ataacttctg
     4021 gtccgatacc ggcggcatct cccatcgtaa ttcccaatat aggtttcata tttactcctt
     4081 gattgaaatt aatcattttg aacgaagtat agcttatata aaatcataaa agtgtgataa
     4141 acatcacaaa agtgatcttt tttaatctta ttgatttaat ttaatcaatt ttaaggtggt
     4201 aaattggata gggtatgaaa gtgaaaggca tttattgcta gataaaagct tcccttttca
     4261 ataaaaaaga gtatcatacg ctctcttaaa cgtaacccta catttaagtc tgtttccaac
     4321 ctatcccaat ttctttattc cttaggggca tatagggtaa aaacaaaaaa gctgaagcgc
     4381 tttttttaat aagtagcgag tcaaatgccc catggcatct attcttttag gaatagaaag
     4441 cttaggcttt ccgcaaggca cccgacttat ttttttcacc tcttgtagaa ggtttatttt
     4501 caatgacaat taaaactcct attcaagccg ttcttgcttc aaaccaatat tttttagatc
     4561 gccaagatgc aatggaatca aacgtgcgta gctacccacg taaattacct tttgcttacc
     4621 aaaaagcaca aggcgtttgg gtaactgatg ttgaaggcaa tgaatacctc gatttcctag
     4681 caggtgcagg aacgcttgca ttaggtcata accaccctaa attaatccaa gcagttaaag
     4741 atgtattaga cagtggttta cctttacact cgttagatat tacgactccg ttaaaagatg
     4801 cttttacgga agaattactc tctttctttc caaaagataa atatatcctc caatttactg
     4861 gcccgtctgg tgcagatgct aacgaagcgg caattaaatt agccaaaacc tacactggtc
     4921 gtggcaacgt aattgctttc tccggtggtt tccacggaat gacccatggt gcgttatcgc
     4981 tcaccggtaa tttaagtgcg aaaaatgcag tacaaggctt aatgccgggc gtacagttta
     5041 tgccttatcc gcacgaatac cgctgtccgt ttggcattgg tggcgaagcc ggtgcaaaag
     5101 cagttgaaca ttattttgag aactttattg aagatgttga aagtggtgtg gtaaaaccgg
     5161 cagcggtgat ccttgaagcc attcaaggtg aaggcggtgt ggttccggct ccaatcagct
     5221 tcttacaaaa agtgcgtgaa gtcactcaaa aacacggcat cttaatgatt gtggacgaag
     5281 ttcaagctgg tttctgccgt tcagggaaaa tgtttgcctt tgaacacgca ggcattgagc
     5341 cggatatcgt agtaatgtca aaagcgattg gtggtagctt accgcttgcg gtattagcga
     5401 tcaaaaaaga gtttgacgct tggcaaccgg caggtcatac cggtacattc cgtggtaacc
     5461 aattagcaat ggcaaccggc tatgtatcgc ttaaaattat gtgtgaagag aatttagcga
     5521 aaaacgcaca agagcgtggc gaatacttaa ctaacgcatt acgtgaatta agcaaagaat
     5581 taccttgtat tggcaatgtg cgtggtaaag gcttaatgat gggaattgat attgttgatg
     5641 aacgtcagcc aaaagatgca acaggtgcat acccgcgtga ttgcgattta gccgttgcaa
     5701 ttcaaaaata ctgctttaaa aacaaattgt tattagagcg tggcggacgt ggcggtaatg
     5761 tggtgcgtgt tctttgtgcc gtgaatatta cccaagcaga atgtgaagag tttattaaac
     5821 gctttaaaca atctgttgct gaagcagtga aagcggtgcg tggttaatag ttagaatggt
     5881 aggggcgaaa catttttcgc cctaatgtaa aaaggggcga atatttattc gcccctacac
     5941 caataggata gaaataatgt caaacctaga aaaacacaga caatccctgt tttgtagcga
     6001 tccaaaatcg attgcggatt atgaatcggc aatgaataac gctgtgaaag cggtttcaga
     6061 ctggctgaaa gaagaaaaaa tgtacaccgg tggctcaatt aaagagttgc gtgccaaaat
     6121 caacggtttt aacccaaccc aagctggtgt gggcgtgcaa aaatcacagg agcatttggt
     6181 ggaaattttc ttaaagccaa gcctcaaagt tcaccaccct cattctttgg cccacttaca
     6241 ttgcccgaca atggtaacca gccaaattgc agaagtgtta attaatgcca ccaaccaatc
     6301 aatggactct tgggatcaaa gcccggcagg ttcgattatg gaagagcatt taattgactg
     6361 gttacgtcaa aaagtcggct atggcaaagg aacttcagga gtctttacct caggtggtac
     6421 gcaatcaaac ctgatgggcg tattattggc tcgtgactgg gcgatagcga accattggaa
     6481 aaaggcagac ggttcagagt ggtcggtgca agccgacggt attcctgccg atgcaatgca
     6541 aaaagtgaaa gtggtttgtt ccgaaaacgc tcacttctcg gtgcagaaaa atatggcaat
     6601 gatgggaatg ggtttccaat cggtagtgac tgtaccgtca aatgccaatg cacaaatgga
     6661 cgttgaagct cttgcgaaaa cgttggcgga tttaaaagcc gaaggcaaaa ttgtggcttg
     6721 tatcgtcgca accgcaggga cgaccgatgc cggtgcgatt gatgatttaa aagcgatccg
     6781 taaattagcc gatgaacatc aggcttgggt tcacgttgat gctgcttggg gtggtgcatt
     6841 attactgtcg aaagatttcc gccacttctt agacggcatt gaattaaccg attccattac
     6901 ccttgatttc cacaagcatt tcttccaatc aatttcgtgt ggggcattct tgctaaaaga
     6961 tgaagcgaat taccgcttta ttgattacaa ggcagactac ctgaattcag aatatgacga
     7021 agaacacggc gtgccgaatt tagtgtcaaa atcattgcaa actacccgcc gttttgatgc
     7081 gttaaaatta tggtttaccg ttgaagcctt gggtgaggag ctatacgctt caatgatcga
     7141 ccacggggtt tatctttcta aagaagtgga agcctacatt aatgccaccg atggcttgga
     7201 aatgttagtg ccggcacaat ttgcctcagt cttattccgt gtcgtaccac aaggttaccc
     7261 ggcagaattt gtggatacct taaaccaaaa tgtggcagat gagttatttg ctcgtggcga
     7321 agctaacatt ggtgtgacca aagtcggtga gcatcaatca ctgaaaatga ctactttaag
     7381 cccgattgca acgcttgaaa acgtaagagc attattagct caggtgttgg cagaagcaga
     7441 tcggattaaa gattcgattg taaatggaac ttatgttccg ccaattgatt aaactgcgtt
     7501 aaaaataaaa aggtgttttc gacatttatt tgtgttttaa tgtttgcatt cggtagtctt
     7561 tatcgaatgc aaattttttt aacaaggagt ttttatgaaa aaagttctgg gtttaacatt
     7621 gatggcaatg gcgttatcgg cgtgtaattc aactgcttcc aacggttctt cacaagcaaa
     7681 tacaggtgtt gcaccggcga atgtgattag cgtgaaacag gcgttagcgg cagcagatga
     7741 cagctacgtg acggtagaag gcacactctt aaacaaagtc ggtgacgaaa cttacttatt
     7801 taaagatgcg acagggcaaa tccgtgttga gattgacgat gaagtatggg caggtcagca
     7861 cgttggtagc aaaggcaata aagtccgttt atacggagag attgacaaag gtttcaataa
     7921 aaccgagtta gatgttaaaa cactcactgt aatcaaacct taatttggtt ccccgccttg
     7981 tttggcgggg tttttacgtt aattaatcaa accatccttt tgcaaaaaaa cgcaaaatta
     8041 taccgcttgt tccttcaata ttgtgctaca agatgctgtg atttgctgca aaatagcggt
     8101 gtaatcagtc tcttttaaac caatattacc gaaatagtgc atttttacat cacgaatccc
     8161 acagaactca aacagccctt ttcccagcgt atgttcaaat gctgctaaaa agccttttcg
     8221 ttcatatttt tcattggaat taccgagcgt tacaaattgt tgcatttttt tgccggtcag
     8281 caagccgata ctttcaattt ccccgttacg ataggcaaaa tcataactta acaccctgtc
     8341 taaatagcct tttaaaattg ccggaaagcc catccaccaa agcggataaa ttaacgtaat
     8401 cacatcagct tcaagccaat attgatgctc aattgccaca tctgcttcat agtgtttact
     8461 gagtgtgcct tgaaattccg cccagtctaa tatcggcttg aagttgagtt ggtagagatc
     8521 tcgtacaacc accttatttg gaacggaagc tgctatcgtt ttttccaaaa tcgcatggtt
     8581 aaagctggag ggattcgggt gtgcgtaaat aatcaggtga ttcatagcgt tttcctttac
     8641 tgtgtcgagg cagctactag aagattttag cgaaactttc tttgatgaaa atcaatattt
     8701 tggcgaatat accggcaaat accccgtttg aggaatgaac ggttttaagt gaacattaga
     8761 taatttagcc tattatagtg atgagtaaaa aggtgttttc ttgactgatt atcctaatca
     8821 atcacttcct cgccgtagct ttttgcgagg gcaattttta gactcgttaa aaagccaaaa
     8881 agtcagtcag caagggtatg agccgattcg tccgccttgg gctaatttag caaatttttt
     8941 agaaaaatgc accgcttgcg gtaactgcat tcaggcttgc gaaacccaga ttattgtaaa
     9001 aggtgctgcg ggctaccctg aaattgattt tagccgtggt gaatgcactt tttgtgaaaa
     9061 atgtgtgcat tcttgcgagg cagaggtatt ccgagcagtt tcagaacagc cttggagcca
     9121 taaaattgag attcaagccg gctgtttatt aaagctcgga acggaatgcc gaagctgtgg
     9181 cgatagctgt gagatgagag tgattcgttt ccgcccgagt ttaggcggca ttgccgaaat
     9241 ggtattaaat ttggaaagct gtaatggctg tggggcttgt ttgagcgttt gtccgacaag
     9301 tgcgataaaa attcagccat tacaaacaca ggcaaacaga gatgagtgaa aaattatccg
     9361 aacaggaaaa ctggtatgtg tgcagtctcg tggtgcaagc aaaaccggaa aaattggaag
     9421 aagtaaaagc cgagattctg aagattcctc ataccgaaat tcacggtgag aaaacagatg
     9481 aaggcaaatt ggtcgtgacg attgaaagca atgtgcattt agccctttcc gatcgaatcg
     9541 atcaagtaag agatattaaa ggcgtgattg tggtgtcttt aatttctaat tacattgatg
     9601 aacagtgatt aatgattatt tttgaagcca aacgtgggac atagttatgg aactcaatcg
     9661 tagagatttt atgaaagcga acgccgctgt ggcagctgct gcagccgcag gaattatgat
     9721 tcctgtgaaa aacgttcagg cagatgacac cggtattcgt tgggataaag ccccttgtcg
     9781 ttactgtggt acaggttgta gcgtgctagt cggtactaaa gacggtaaag tagtggcaac
     9841 ccaaggtgac ccggatgcag aagtaaaccg tggtttaaac tgtattaaag gttatttctt
     9901 atccaaaatg atgtacggtg cagaccgtat gcaagagcca atgttgcgta tgaaagacgg
     9961 taagttcgac aagaacggcg atttcacgcc ggtttcttgg gatcaagcct ttagcattat
    10021 ggcggagaag attaaaacca ctattaaaaa tgacggcccg aatgctgtag gtatgttctc
    10081 atcaggtcaa acaaccattt ttgaaggtta tgcgaaagtg aaactttgga aaggtggttt
    10141 ccgttcaaat acgattgacc cgaatgcccg ccactgtatg gcgtccgctg cggttgcctt
    10201 tatgcgtacc tttggtatgg acgagccgat gggctgctat aacgacatcg aaaaaaccga
    10261 tgcgttcgtg ctttggggtt caaatatggc agaaatgcac ccgattttat ggtctcgtat
    10321 ttctgatcgc cgtttatcag acaataaagt gaaagtggtg gtaatgtcta cttacgaaca
    10381 ccgttcgttt gaattagccg atacaccgat tatcttcaaa ccacactcag atttagcaat
    10441 cttaaactac attgctaact acattatcca aaacgataaa gtaaactggg attttgttaa
    10501 caaacacacc aaatttaaac gtggtgaaac caatatcggt tacggtttac gccctgaaca
    10561 caaattacaa caaaatacca atgcgaaaac cgccggtaaa atgtatgaca gcgattttga
    10621 agagtttaag aaaatcgttg ccccttatac attagaagaa gtacaccgta tttccggtgt
    10681 gccgaaagat cagcttgaaa cattagcaaa attatatgca gatcctaacc aaaaattagt
    10741 gtcgttctgg acgatgggct ttaaccaaca tacccgtggt gtgtgggtaa accatatgat
    10801 gtacaacgtc catttattaa ccggtaagat tgcgttagaa ggttgcggac cattctcact
    10861 caccggccag ccgtcagctt gtggtactgc ccgtgaagtg ggtacattta ttcaccgttt
    10921 accggcagat atggtggtta cgaatccgaa acaccgtgag attgtagaga aatcgtggaa
    10981 attaccggct ggagcaattc ctgatgtacc gggcttccac gctacagcac aaagccgtgc
    11041 cttaaaagac ggtaaaatga aattcttatg gcagatgtgt accaacaata tgcagggtgg
    11101 cccgaatatc aatgaagaga ttttcccggg ctggcgtaac cctgaaacct ttattgtggt
    11161 ttcagatccg tacccatctg tttcagcagt ggcagccgac ttaattcttc caacctgcat
    11221 gtgggtggaa aaagaagggg cttacggtaa cgcagaacgc cgtacccaat tctggcgtca
    11281 gcaagtgaaa ggaccggcaa atgcccgctc ggatacttgg cagttagtgg agttctctaa
    11341 atactttaaa gtagaagaag tatggccgga agagttatta gccaaagcac ctgaattgcg
    11401 tggtaaaaca ctatatgaaa tcctttatcg caacggcaaa gtagatagct accaagtgcc
    11461 aaccaacatt ccgggctata tgaatgatga agccgaacac ttcggttact acattcaaaa
    11521 aggcttattt gaagagtatg cggaatttgg acgtggtcac ggtcacgatt tagccgactt
    11581 tgacacctac cacaaagtac gtggtttacg ttggccggta gtaaaagacg agaaaaccgg
    11641 cgaatacaaa gaaactttat ggcgttaccg tgaaggctat gacccatacg ttaaagcggg
    11701 tgaagaagtg gcattctatg gcaatgcgga caaaaaagca gtgattttag gtgtgccata
    11761 cgagccacct gcggaagcac cggacgaaga atatgactta tggttctgta ccggtcgagt
    11821 gttagagcat tggcacaccg gtactatgac ccgtcgagta ccggagttac acaaagcatt
    11881 cccaaccaac ttagtttgga tgcacccaaa tgatgcgaaa aaacgtggct tacgtcatgg
    11941 tgataaagtg aaagtgattt cacgccgtgg tgaatatgtt tctaacttag atacccgtgg
    12001 acgcaataaa tgtccggaag gtttgattta ctcgactttc ttcgatgccg gtcagttaat
    12061 caacaaagtg acacttgatg cgactgatcc aatttcattt gaaaccgact tcaaaaaatg
    12121 tgcggttaaa gtggtgaaag cttaattgta ggggcaaatt atttgcccca gacaagcggt
    12181 caaatttgca aattttttta caaaaacgac cgcttaccta agaggaaccc acaatgaaaa
    12241 tggatccaaa tcgtcgccag tttttaaaaa atgcaactcg taccgcagct ggtgtttgcg
    12301 gtgtgggaat cattttaggg ctacagcaac aacaaagttt tgcccgccaa ggggtggcgc
    12361 tgcgtccacc gggtgcattg ccagagcaag atttcctgag tgcttgcacc cgttgcggac
    12421 aatgtgtgca ggcttgtcct tacgatatgt tgcatttggc atcgcttatt tcaccagtgg
    12481 aagccggcac gccatacttt attgcacggg ataaaccttg cgaaatgtgc gtggatattc
    12541 cctgtatgaa tgcttgccca accggggcat taagcgaaga gctaaaagac attgacgatg
    12601 cacgaatggg gcttgcggtg ttgctcgacc acgaaacttg tcttaactgg caaggcttgc
    12661 gttgtgacgt gtgttaccgt gtttgtccgt taatcgacaa agcgattact cttgagaaag
    12721 tgcataacga ccgtacctcg attcacgcca aactgattcc gaccgtgcat tctgatgctt
    12781 gcaccggttg cggtaaatgt gaacaggctt gcgtattgga agaggcagcg atcaaagtgt
    12841 taccgatgga tttagccaaa ggcttgctcg gtcgtcacta tcgtttaggc tggcaagaga
    12901 aacaaaatgc cggtaaatcg ctgattgaag atgttcaccc agagggttta cgcccagctt
    12961 atgatgccag aatgccggaa ggcttacacg agccggtgta tcagcatatg gaagtaaaac
    13021 ctgatgtgaa agtggctacg ccaagtcggg cgacacaaaa ctatgtgccg aactctacga
    13081 cggtggaagc tccggagcat ttccctgatt tagacttgaa tctcaagggg gtgaaataat
    13141 ggcagccaat tctccaaaaa atgcgggctt agaggctcgt cagaaactag gttggtggca
    13201 cgcttaccgc tttttgattt taagacgctt aagccaactc agcattattt tgatgttttt
    13261 aagcggccca ctttggaatg tatggatttt aaaaggaaac tacagcggta gcttattact
    13321 agataccgtg ccgatgacag acccattaat gaccgctgaa gtgctggcaa ccggctatcg
    13381 ccctgaatgg acggtattgg ttggggcgtt aattatggtg gcgttttacg gcattgtcgg
    13441 cagcaagctg ttttgtagtt gggtttgccc gatgaatatg gtaacagata ctgctgcttg
    13501 gttaagacgc aaactcggta ttcgccaaac tgctaaaatt ccacgcaatt tacgctatgt
    13561 gattttggca gtcattttag tcggtagtgc aatttccggc acgctattgt gggagtggat
    13621 caaccctgtt gcggctctcg gtcgggtgtt tgtattcggc ttaggggcaa tgctctggct
    13681 ggttttagtg gtgttcttgt ttgacttatt ggtagcagag cacggctggt gtggtcatct
    13741 ttgcccgatt ggtgcaactt atgccttaat tggggcgaaa agcctgatta aagtcaaagt
    13801 cgtggatcgt aaccgttgtg ataattgtat ggattgttac aacgtttgcc cggaacccca
    13861 agtgttgcgt gtgccgctac acggtaaacc ggaggaaagc acgattatct tatctaaaga
    13921 ttgcattacc tgcggacgtt gtattgatgt ttgtgccgaa aatgtgtttg ccttcggaag
    13981 tcgttttcaa ggcagtattg atgtgaaaaa tatttaattt ttatcttttt gaaaacaaga
    14041 attttaatgg agtgaacctc aaatgagaaa atatctcgcc ttaattttag ctgtgatgtc
    14101 cggctttgca atggcggaag ccccgaagtt atccggcact attgatgaga caaccgaaag
    14161 tgttgcaccg ggatttcata acccacaaaa agatgtgggc acgattccaa ccactttccc
    14221 tttccaacca ccacttgttc cacatagtat tcgtggctta caagtgagca aaaacgtaaa
    14281 ccattgttta ggttgccacg ctattgaacc atctaaaacc acaggtgcga cccgtttacc
    14341 gccaagccat tttaccgacc gtgatggcaa ggtgtacgaa aacgaatctc ctcgtcgtta
    14401 tttctgtttg caatgccacg tgcaacaaac tgatgtaaac ccgattattc aaaataaatt
    14461 tgaatctgta cgtgaatctc aagctaaata aggagtaagt aatgttgaga agattttgta
    14521 actggttacg tagcccaagc aaaatggcaa ttggtgctgt aatccttatt tctgcattag
    14581 gtggtatttt cgcttggagt ggttttaatg cagggttagc aatgacaaat actgaagagt
    14641 tttgttcaga ttgccatatg aacgatgttg tgccggaata ccgtgcctct gctcactatt
    14701 caaaccgcag cggtgtgaaa gcgatttgtt cagattgcca cgtaccgcac gaattctttc
    14761 caaaatggca acgtaaaatc atagccgcaa aagaagttta tgcacacttt atcggtaaag
    14821 tagataccaa agagaaattt gaagctcatc gtggcgaaat ggcagaacgt gaatgggcac
    14881 gtatgaaagc gaacggctct caagagtgcc gtaactgtca taattttgat gatatggact
    14941 tcactcaaca aaaaaacatt gcgcagcaaa tgcacgcatt ggcacaagag caaggtaaaa
    15001 cctgtattga ctgccacaaa gggattgcac acaatctccc acatatggaa gcgatccaga
    15061 aaaactttat ccctgatgat ttgctgaaaa aagcagaaga gaagaaataa cttaacgtgt
    15121 ttcaatagaa aaccctcaat ttccattgag ggtttctttt tagtagccaa gttagtaacc
    15181 aatggcattg acatttggta aaaaatcgtt ggaatttaac cgcttgacga ccgtttctat
    15241 cgtgccgttt tcgtgcaatt caatttcacg ccagccttgt ggttgtaagt ctaaggtaaa
    15301 ctggtcgcaa ttcggcttaa attgaatgca agtagatggg gtggcataaa tcggaatacc
    15361 atgccaaata tcatcaacct gctgatgaat atgaccatgc acaatcgctt ttacattctt
    15421 aaattttgcg aaaatctcgg ataattcatt gctgtttttt aagctatgct gatccagcca
    15481 cgctgagttt gtcggcaaaa tattgtggtg cagagcaacc aaggtaaacc gttgcggata
    15541 ttgtgccaat ttttcttcta accatttaag ctgtgagtaa gagagttcgc cataaggcat
    15601 acctaccacc tgggtattta gcatcagaag ctgccattgc tcaccgagta aaatttgttt
    15661 atggggaagg atatgtttat attgcgccaa aatttctgac atactcggct gaacatcgtg
    15721 attcccctct agccacacta tcggcgagtt tagcgaatta gttatctgtg caaaatagtg
    15781 ataaccagca atattgtgat cttgaatcaa atcacctgtg gcaagaacta gatcaaaata
    15841 ttgcttcgct tgtttgttta tttgctcaat aactgccgaa aaacttttta ctgttttgac
    15901 attaagtaga gtttcctccg gattggagaa aaggtgaggg tcagttattt gtaataactt
    15961 aattacccct gttacgggta acttaatata ttcgtgcatt cgttttgcat ccattcaaat
    16021 tctagtaatt tttaactggt gagattctat cagtaagcta aaagtaaaaa tgtggactat
    16081 gccgcatttt tgaaaaaaag tgagattaat caaaaaaatt tattattttc gatagctaat
    16141 acaatgataa gtattgatta atattttcat at
//
LOCUS       DANLUT010000041        16041 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLUT010000041 DANLUT010000000
VERSION     DANLUT010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16041
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            125..2347
                     /gene="glgB"
                     /locus_tag="PXB38_001043"
     CDS             125..2347
                     /gene="glgB"
                     /locus_tag="PXB38_001043"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL5353376.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDLTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGACYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFNYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNYLYTQTPALFEQD
                     YNPEGFEWLVMDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTTQNIT
                     "
     gene            2366..4375
                     /gene="glgX"
                     /locus_tag="PXB38_001044"
     CDS             2366..4375
                     /gene="glgX"
                     /locus_tag="PXB38_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL5353377.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLVHPVSIDYLKTLGITAVELLPVYHIDETHLQKQGLV
                     NYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKNG
                     PMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDGF
                     RFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGAEGYQLGQFPEPFYQ
                     WNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFAKYSVSKSINFITAHDGFTLQDLT
                     SYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAGV
                     PMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSKQ
                     NNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQGN
                     WKVVLEQAQGTLMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            4368..5681
                     /gene="glgC"
                     /locus_tag="PXB38_001045"
     CDS             4368..5681
                     /gene="glgC"
                     /locus_tag="PXB38_001045"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL5353378.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRSKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            5804..7240
                     /gene="glgA"
                     /locus_tag="PXB38_001046"
     CDS             5804..7240
                     /gene="glgA"
                     /locus_tag="PXB38_001046"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL5353379.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLTNIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            7335..9836
                     /locus_tag="PXB38_001047"
     CDS             7335..9836
                     /locus_tag="PXB38_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
                     /protein_id="HDL5353380.1"
                     /translation="MSRQSLSPEMIKNVKNAILHKMVFALGVEPRDASKRNWLNATLR
                     VVRDLSTEDWLQTRRSQVANGSRRVYYLSMEFLMGRTFSNAMISEGVYELIGAALKEL
                     GQDLEEIINEEGDPGLGNGGLGRLAACYMDSLATMKIPAIGYGIQYEYGMFRQEIRNG
                     EQIEQPDEWLENEFVWPYLRSSKRFPVRFGGKTWREGKKVVWQPEEEITAQAHDQLIP
                     GFETTSTNSLCLWSAHASGRGFGLSDFNRGDYFAAMVKQNSSENVSRVLYPDDSTYNG
                     RELRLRQEYFLCSASVQDIIRRHEAEFGSCVNLADKVAIHLNDTHPTLAVPELMRILI
                     DEKGYGWEQAWAMTRKIFFYTNHTLMSEALETWPVEMLARVLPRHLEIIFDINEYFLE
                     EVRSQFPEDHDLISRVSLIDEQGDRRVRMAWLAVVASAKVNGVAKIHSDLMVESIFAD
                     FARIYPNRFTNVTNGVTPRRWIKIANPGLANILDKCIGNKWLTDLSELEKFNVFVDDA
                     DVQAQVAAVKVENKRRLAKYVEETQGIKLNPEAIFDVQVKRIHKYKRQQMNVLHIITL
                     YNRILKNPTADWTPRVFIFAGKAASAYYAAKKVIRLINDVANVVNNDPRINDLIKVVF
                     IPNYGVSLAQMIIPAADVSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEILDH
                     VGKENIFIFGNEVEQVEELRRNGYSPYHYYEKDSELNEAISQILNGKFSPEDPYRYQD
                     LILNSGDYYQACADYRSYVEAQEKVAQAYRNKKAWTRSAIINIANMGYFSSDRSVMDY
                     AKNIWHIEPMSEEQLKGDSTMGSIIESSNKLLNLK"
     gene            complement(9923..10639)
                     /gene="trmJ"
                     /locus_tag="PXB38_001048"
     CDS             complement(9923..10639)
                     /gene="trmJ"
                     /locus_tag="PXB38_001048"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL5353381.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRANLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            10819..12357
                     /gene="pntA"
                     /locus_tag="PXB38_001049"
     CDS             10819..12357
                     /gene="pntA"
                     /locus_tag="PXB38_001049"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL5353382.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNAFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDYQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQPQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            12372..13817
                     /gene="pntB"
                     /locus_tag="PXB38_001050"
     CDS             12372..13817
                     /gene="pntB"
                     /locus_tag="PXB38_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL5353383.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEYRETTAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(13884..14810)
                     /locus_tag="PXB38_001051"
     CDS             complement(13884..14810)
                     /locus_tag="PXB38_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5353384.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(14920..16035)
                     /gene="asd"
                     /locus_tag="PXB38_001052"
     CDS             complement(14920..16035)
                     /gene="asd"
                     /locus_tag="PXB38_001052"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL5353385.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILEIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         4588 a         3106 c         3667 g         4680 t
ORIGIN      
        1 aaaacgattt tattttgtga tttagctcaa aaaatggcgt aaatccactt cttttatttc
       61 tatttagtga tagagtgaga actattgaaa tttaagtatt aaacgcttta agcaaggagt
      121 gccgatgcaa gactatactt attctgaaaa agatgctttt tttgttgagc gactttcttc
      181 gggttcttgt aatgatcctt tctcctacct aggtattcac cctagcaata acggcgttat
      241 tattagggta tttcttcctt ctgctatagc ttgccaagtg atcgatttaa acggaaagcc
      301 tgtgtcatca atgctaaaaa ttgatgatag aggctttttt attgcagagc tgattggtaa
      361 aaaaacagat ttttcttacc gcttgttggt ggaatacccc gatttaacag tagatattga
      421 agacccttac cgttttaaaa cccacattca agagctggat aactggctgt ttgccgaggg
      481 aaaacaactt cgcccgtacg aaaaattggg ggcacattta gtcacgcaaa atgaggttgg
      541 tggtgtgcat tttagcgtat gggcaccaaa tgcacagagg gtttctgtgg ttggggattt
      601 caaccactgg aacggtttgg tgcattcaat gcgattccac cccgattccg gcatttggga
      661 tattttcctg ccgaatgtga aaaaaggggc ttgctataaa tttgaagtgt tggatcgaaa
      721 cggcgtgttg cgtttgaaat ctgaccctta cgcctttgcc tcccaattcc gccccgaaac
      781 cgcatctatt gtttccggct tgccaagcat tgtgccagcc gagaaaacct gccgtaatgc
      841 gaatgctccc gataaaccga tttccattta tgaagtgcat ttaggctctt ggcgacgcaa
      901 tattgaaaac aattattggc ttagctatga agaactcgct gatgaactca ttccttatgt
      961 gaaagatatg ggctttaccc atattgaatt gctgcctatt tccgaatttc cgtttgatgg
     1021 ctcttggggt tatcaaacca ccggcattta ttcgccaacc agccgttttg gtacgcctga
     1081 gggcttgagt tactttatcc aaaaagctca cgataaaggc attggtgtga ttcttgactg
     1141 ggtagtgggg cattttccgg tagatgaaca cggcttggtt tattttgatg gaacgcattt
     1201 atacgaacat tccgatccga aagagggcta ccacaaagat tggaatacct taatttttaa
     1261 ctacggcaga aatgaggtga gcaattattt gtctggtaat gcactttatt ggattgagcg
     1321 ttttgggatt gatgcgttgc gggtggatgc ggtggcgtca atgatttatc gtgattactc
     1381 acgttcagac ggcgagtgga ttccaaataa atatggcgga cgtgagaact tagaggcaat
     1441 cgacttctta cgccacacca ataatatttt gagagacgaa agccaaggcg gtgcgagcat
     1501 tgcagaggag tccacctctt ttgccggcgt gtctcactcc actgaaagag gcggtttggg
     1561 ctttaattat aaatggaata tgggctggat gaacgacact ttacgctata tgcaaaaaga
     1621 tccaatttac cgccgttatc accacaattt aatgactttt ggtatgactt accaatacag
     1681 cgaacagttt gtgttaccgc tttcacacga tgaagttgtt cacggcaaag gttcattgct
     1741 gaataaaatg ccgggggatt gctggcaaaa atttgcgaac ttacgagcct attatggcta
     1801 tatgtggggc tatccgggca aaaaattgct ctttatgggc aacgagtttg ctcaaggtaa
     1861 agagtggaat tttgccgaga gcttagattg gtatttactc ggggaagaag ggggcgaatg
     1921 gcataagggc gtattgggtt gggtaaaagc ccttaactat ttatacaccc aaacccctgc
     1981 actgtttgag caagattaca atcctgaagg ttttgagtgg ttagtgatgg acgatcacga
     2041 taattcggtg tttgcttttg agcgtaaagc caaaaatggc gattcggtga ttgtggtgag
     2101 taatttcacc ccgattgtgc gtgaaaatta ccgttttggg gtgaatgaat tggcagaata
     2161 tcaggaaatt ctcaattctg atttagcttg ttattgcggt agtaatgtca gcaatgcaaa
     2221 ccgatttgcc agcgagttaa ttgcatcgca cggtaaagcc tactccttga gcattacttt
     2281 gccaccgcta tcgactatct tcctcaaaag agccgcagac aaaaaaacaa cacaaaacat
     2341 aacttaaaga aacataaaaa ataatatgca ctattttaga ggtaagcctt ttcctttagg
     2401 caataaactt gatagacaag cgggtgaatt tggcacaaat tttgccattg tttcgcaaaa
     2461 tgcaaccgct attgagttat gtctttttga tgaaaatcac cacgaaaccc gtattccgat
     2521 gttttcttcc ggagatactt ggcacatttt tgtagcaggt gtacaagcag ggacaaaata
     2581 tggctacagg gtgaaaggca tacaagatga acaagccggt ttgttattta atccgcaaaa
     2641 attattgact gatccttacg ctaaagcgat tgaagggaag ccggatttaa gtagtgcaga
     2701 ggcagccgct tggtataaat ggaacgatga acgggataat gcctctcttg cacctaagtc
     2761 tatcgtgatt gatgagcatt ttgattggga aaatgatagc cagttattca ctccttgggc
     2821 agagactatt atttatgaaa tgcaggtgaa aggttttagt cagcggaact ttcagattcc
     2881 aagcgacatt cgaggcactt ttgccggttt ggttcaccct gtttcgatag actatttaaa
     2941 aaccttagga atcaccgcag tagaacttct acccgtttac catattgatg aaacccattt
     3001 gcagaaacaa gggcttgtga attattgggg ctataatgta ttaggtaatt ttgctattga
     3061 tccgaattta gcagcagata agcaaaatcc tcttaaagag tttaaacagc tcgtaaaaac
     3121 attacatcaa gcacatatcg aagtgattat ggatattgtg tttaaccaca cagctgagag
     3181 tgataaaaac gggccgatgc taagttttag aggcattgac aatacagctt attggctaga
     3241 taaacagggc gaatacgaaa attggactgg ctgtggtaat accttaaatt tgagcaatcc
     3301 ttatatactc tgctgggcaa tcgattgctt aatctattgg gtggaggagt gccatattga
     3361 tggattccgc tttgatcttg cctcaattct aggtagaaca ccgagttttt ctgaaaaagc
     3421 agattttttc acagcactta aaagccattc taaattaaca catattaagt tgattgctga
     3481 gccttgggat attggtgcag aaggttatca attagggcaa ttccctgagc ctttttatca
     3541 gtggaatgat tgttatcgtg atgatatacg ccgtttttgg ttacaaaacc aaggtgattg
     3601 ggggcttttg gcacggcgat tggcaggaag tgatgatgtg tttgctaaat attccgtttc
     3661 aaaaagtatc aattttatta cggcacacga tgggtttacg ttacaagatc tcaccagcta
     3721 tcagcaaaaa cataattggg caaatggtga acaaaaccga gacgggcata atagtaacta
     3781 cagcaataac cacggtgttg aagggcagac agcagatgaa ttggtaaaaa aacagagaga
     3841 aatcaccgct tgtagtttgc ttgctacgct ctttttatcg gctggtgttc caatgctttt
     3901 agccggtgat gaaatcggac atagtcaaca aggtaacaac aatagttatt gccaagataa
     3961 tgagatcact tggctagatt gggaaaatat gaatcacaca cggctggatt atgttcgtag
     4021 tttaatccgg ttgcgtaaaa aaatcgcttt gctttccaag cagaataatt ggtggcaaga
     4081 ggattcggta caatggttga atccttctgc tcagctaatg aatattgacg attggcataa
     4141 tcaacataat gggcttgtcg ttttattaca ggaagaatgg ctgcttttat tcaatgctaa
     4201 tcgacaacct caaccgtttt tactgccaca aggcaactgg aaagttgtgt tggagcaagc
     4261 tcaaggtact ttgatgacag acacgcaagc ggttacgctc aataatatgg gggtatgcgt
     4321 acttcaaaaa agtgatgtaa tgttcgctaa taaattggag acacaatatg cttaaccaag
     4381 aatcaacggc tcttgttgca agacaagatt taaccaacga taccttagta ttaattcttg
     4441 caggaggacg aggttctcgc ctatacgaat taaccgataa acgtgcaaaa ccggcagtct
     4501 atttcggtgg tagccgccgt attattgatt ttgcgttatc aaattgtatt aactcgaatt
     4561 tattaaaaat cggggtgatt acccaatatg cagcacactc tttgttgcgc catttacaac
     4621 gtggttggtc atttttacct tatgaacgta accaatatat tgatatgtta ccggcacgcc
     4681 aacagctaga tgaaaacact tggtatcgtg gcacagcgga tgcggtgtat caaaatatgg
     4741 cgatgatgaa atcgcactat agatcaaaat atgtggtgat tttagcaggg gatcatatct
     4801 ataaaatgga ctacactcaa atgctgaaag atcacgtcga tcaaggtgca aaatgtactg
     4861 taggttgtat cgaagtgcct cgctcgcaag caacagagtt tggggtaatg gcggtgaatg
     4921 aaaagctgaa agtgaaagag ttcgtcgaaa aaccagctga tccacctgca atgccgggaa
     4981 aaccggattc ctcgctagca tcaatgggga tttatgtatt taatgcagat tatctatatg
     5041 aaatgctgga aaaagaagcc tctacaccgg gaacctcaca tgatttcggt aaagatatta
     5101 ttccaaaagc agtagagcaa ggtgtgctat atgcccaccc atttgaacgt tcttgtaaag
     5161 ggcgtaatgc cagtggggca atttactggc gagatgtcgg tacgattgac agctactggg
     5221 ctgcccatat ggatttagtt tctgaagatc cggaattaga tttatatgat gaatcttggc
     5281 cgattcacgg tcgtccgcaa caaactgcac cggcacgttt tttctataat cgtgcgcgtg
     5341 ccagaaccct agataactca ctgattgcgg gtggttgtgt gattaccgat gcggaaatca
     5401 gtaattcggt cttatttaac cgtgttcacg ttgaagcgga gtcggtgatt gaacacacag
     5461 tgattttacc gcaggtgact atcggtaaaa attgcgtaat taagcgcgct gtgattgaca
     5521 gacattgtgt aattcctgat ggcttagaaa ttggtgtaaa tgccgaagaa gatgcgaaac
     5581 gttttcgtgt cagcaaaaat ggcattgtat tagtgacaca gtcaatgtta gataaattag
     5641 cgggaaaaga agccaattcg gatattaaat atacaattta gtaagagatg atataatgct
     5701 tcgagtttgt catttgaggt cgcaagctcg aagtattgtt atgattaaag cgcttcaagc
     5761 ggtcttattt ttcaactatt ttacacatag aaaacggtta aaaatgaaag ttttacatat
     5821 ttgctctgaa atgtaccctt taattaaaac aggcggttta gctgatgtaa tgggggcatt
     5881 gccatttgcg caacagcaag ctggtaatga tgtcagagtg ttaattcctt attacccgaa
     5941 agtcgcgcaa actttagggg aaacggtaga agttgctact atcggcactt ttgccggaac
     6001 agtctctgtt cgatttgctt attttaatgg cttaggcgtt tacgttatcg atgcgcctca
     6061 tttatttatg cgtgatggta acccttatca cgacagcaat tatcaagact atccggataa
     6121 ctataaacgc tttgctttat taggttacat tggggcgcaa ttagcccaag gtttggatca
     6181 ttggtgggga accgctcaag ttttacacgc acacgattgg caagcagggc ttgcttgtgc
     6241 ctatcttaaa agttggggaa gcaatgtaaa aacgctcttc actattcata atattgccta
     6301 tatcgggcgc tttaatgcct ttcatttagc agagcttggc ttaccttggg aatttttcca
     6361 cgccgaaggc ttagaatttt acggtgaaat ttcttacctc aaagcaggtt tgtattttgc
     6421 tgatcgcatt actaccgtta gcccgaccta tgctcgtgaa attactgagg aaattgccgg
     6481 tgcaggcttg catggtttac tggcaacccg tcaatatcaa ggtagattgc gtggcatttt
     6541 aaacggggtc gatgctgagg tgtggaatcc ggaaacggat acacatattg tggtgaatta
     6601 tcgtgcgaac tatatgcacg gtaaagccaa aaataaagcg gaactccaac gaatttttgg
     6661 tttgccagaa gacaaagaag cattattgat ggtaatggtg actcgtttaa ctgagcagaa
     6721 gggggcagat ttcttactca ccaatataga taccttaatg caacataagg tacagattat
     6781 tgtattggga agtggatcgc cagatttaga aaatgcgcta cgttatttcc aacacaaata
     6841 cccgaaccaa attggggtga aaatcggtta tgacgaggct ttatcgcacc aaattattgc
     6901 aggtggtgat ctgattctag taccaagccg ttttgagccg tgcggattaa ctcaacttta
     6961 tgggctgaaa tatggcactt taccgctggt tcgccgtacc ggtggcttag ctgatacggt
     7021 ggtagatagc cataaagaga gcattgaaaa ccgcagtgcc accggatttg tatttgatta
     7081 cccagatgca cctgcgtttt tagaggcagc tatgcgggca atcagcttat ggcagaaaca
     7141 aaaattgtgg tcgagcgttc gccagaatgc ccttgctcaa gattttggtt gggcaaaagt
     7201 ggcagaacag taccaaaatt tataccacga aattatttaa tttgtattca caacatcatt
     7261 tcaagcggtc gaatttgcgg atttttttgt aaaaacgacc gcttgcaata ttaaaaatta
     7321 ggagaattta ctcaatgagc aggcagtcat taagcccaga aatgatcaaa aatgttaaaa
     7381 atgcgatttt gcacaaaatg gtgttcgctt taggggtcga accccgtgat gccagtaagc
     7441 gtaactggct caatgcaacc ttacgtgtag tgcgtgattt atctaccgaa gattggttac
     7501 aaacccgccg tagccaggtt gcaaatggta gccgccgtgt ttattacctt tcaatggaat
     7561 ttttaatggg gcgtacgttc agtaacgcaa tgatttctga aggtgtgtat gagcttattg
     7621 gcgctgcgtt aaaagagtta gggcaagatc tggaagagat tatcaatgaa gagggcgatc
     7681 cgggcttagg taacggtggc ttagggcgtt tagccgcctg ctatatggac agccttgcca
     7741 caatgaaaat tccggcaatc ggctacggta ttcaatatga atacggtatg ttccgccaag
     7801 aaatccgcaa cggggagcaa attgagcaac ctgatgaatg gttagagaat gaatttgtgt
     7861 ggccatatct acgttcaagt aagcgtttcc cggtacgctt tggcggtaaa acttggcgtg
     7921 agggcaaaaa agtagtatgg cagccggaag aagaaattac cgctcaagct cacgaccaac
     7981 tgatcccggg ctttgagacc acctcaacta acagcttatg tttatggtct gcacacgcat
     8041 cgggtagagg gtttggctta tctgatttta accgtggcga ttattttgca gcaatggtta
     8101 aacaaaacag ctcggaaaat gtctctcgtg tgctttatcc ggacgattct acctataacg
     8161 gtcgtgaatt acgcttacgc caagagtatt tcctttgctc ggcatctgta caagatatta
     8221 tccgccgcca cgaagcggag ttcggctctt gtgtgaattt agccgacaaa gtggcaattc
     8281 acttaaatga cacacaccca acccttgcgg tgcctgagtt aatgcgtatt ttaattgacg
     8341 aaaaaggcta tggctgggaa caagcgtggg cgatgactcg taaaattttc ttctacacca
     8401 atcacacttt gatgagtgaa gcgttagaaa cttggccggt agaaatgtta gcccgtgtgc
     8461 taccacgcca tttagagatt attttcgaca ttaacgaata tttcttagag gaagtgcgta
     8521 gtcaattccc ggaagatcac gatttgattt ctcgtgtttc cttaattgat gaacaaggcg
     8581 atcgccgtgt gcgtatggcg tggcttgcgg tagtcgcctc agcgaaagta aatggtgtgg
     8641 cgaaaattca ctcggattta atggttgaat ctatttttgc cgattttgcc cgtatttacc
     8701 caaatcgttt tactaatgtg actaatgggg tgacacctcg ccgctggatc aaaattgcca
     8761 acccagggct tgctaatatt ttagataaat gtatcggcaa taagtggctg actgatttaa
     8821 gtgaattgga aaaattcaac gtgtttgttg atgatgctga tgtgcaagca caggtggcag
     8881 cggtgaaagt agaaaacaaa cgtcgcttag ccaaatatgt cgaagaaact cagggaatta
     8941 aacttaatcc tgaagcgatt tttgatgtac aagttaagcg tattcacaag tataaacgcc
     9001 agcaaatgaa cgtgttgcat atcatcacgc tttataaccg catcttgaaa aacccgactg
     9061 ctgattggac acctcgtgtg tttatcttcg cagggaaagc ggcaagtgct tattatgcgg
     9121 cgaaaaaagt gattcgtttg attaatgatg tggcaaatgt ggtgaataat gaccctcgca
     9181 ttaatgattt aattaaggtg gtgtttattc cgaactacgg tgtttcatta gcacaaatga
     9241 ttattccggc agctgatgtt tcagagcaaa tttccttagc gggtacagag gcctccggaa
     9301 cctctaatat gaaatttgcc ctcaatggtg ctttaaccat tggtacatta gacggtgcga
     9361 atgtcgaaat tttagatcac gttggtaaag agaacatctt tattttcggt aatgaagtag
     9421 agcaggtgga agagcttcgc cgcaacggtt actcaccgta tcactactac gaaaaagaca
     9481 gcgaattgaa tgaggcaatt tcacaaattc taaacggtaa attctcaccg gaagatccgt
     9541 atcgctatca agatttgatc ttaaattcag gtgactacta ccaagcctgt gccgattatc
     9601 gtagctatgt ggaggctcaa gaaaaagtgg ctcaagccta tcgtaacaag aaagcttgga
     9661 cacgttcagc catcatcaat attgccaata tgggctattt ctcctcagac cgctcggtga
     9721 tggattatgc gaaaaatatt tggcatatcg aaccgatgag cgaagaacaa ttaaaaggcg
     9781 attctacaat gggcagtatt attgaaagtt caaataaact gttgaattta aaataatgat
     9841 ttagagaaaa cggtaagagt aatcttaccg tttttgtttt agtcagggat tttgcaaatt
     9901 tctactaaaa attaaccgct tgtcaatttg ccttctccac cgccgtgagc attcccctca
     9961 gtaaattcag ctcattagtt tccagttcgg cacgttggta taaacggcgg agttttagca
    10021 tcactgaatc attgcggata aagcctaatt cggtatataa gcgttcggtg tgagcaaaga
    10081 aatgctctaa cgcttgagcg gttgggtaat ccttatctgc tgcaagcggt tgtttttcgc
    10141 cagaattttg caaataagcc attcggattt cataacttgc gagctgtact gccattgcca
    10201 aattcagaga accataatca ggattggttg ggaaattcaa atggtactgg catttcaata
    10261 attcttcgtt ggttagcccc actcgctcac gtccaaatac aatcgccact ttgccaagat
    10321 tggctcgatt taccactaat tcaccacagt ctcttggttc aatcagggta ttttgcaaat
    10381 ggcgaagtct ggcactggtg ccgatcacca gttggcaatc ggcaatggct tcatcgaaag
    10441 tggcgtagca ttgagcgtta tccaacacat cttttgcccc agcagcaagg gcttcggctt
    10501 gttcatcaag cggttgtttt ggggcgacta atcgcaaatg ggttaagccc atcgttttca
    10561 ttgctcgggc tgcggaaccg atatttgccg ggagtgaagt ttcaacaaga atgatctgaa
    10621 tttggttgag aatctgcatt ggttttgttt cttttttgtt aaatttagcc tgttaatagt
    10681 gtagcaaaaa tttagcctgc ttaaaatttg aaaaaatggg aaataatcgg tttaattggg
    10741 cataattttt tacctatttg ttttatttag tggtacattt agagcgtttt taatcacaac
    10801 aaccatacag gagtctttat gcttattggt gtaccaagag agctgttaga cggtgaaact
    10861 cgagtggcgg caacgccaaa aaccgttgag cagatcaaaa aacttggctt tgacgtactt
    10921 gtggaacaag acgcaggttt taaagccagt tttgaagata atgcattttt aaatgcaggt
    10981 gcaaatatcg gcacacaaca agaagtttgg aatgcagaca ttatttttaa agtgaatgcg
    11041 ccgacagaag ctgaaattga gttaatcaaa gaaggggtaa ccttagtcag ctttatttgg
    11101 ccggcacaaa atccacaatt gatggaaaaa ttgcagtcta agaaaattaa tgtgttggca
    11161 atggacgctg tgcctcgtat ttcccgtgcc caagctctcg atgctttaag ttcgatggca
    11221 aatatttcgg gttaccgtgc ggtgatcgaa gcggcaaacg cttttggtag cttctttact
    11281 gggcaaatta ccgcagcagg taaagtacca ccggcaaaag tgttggtaat tggagccggt
    11341 gttgctggct tggctgcaat cggggcggca aatagcctgg gggcgattgt gcgtgccttt
    11401 gactctcgcc ctgaagtaaa agagcaagtt aaatcaatgg gggctgattt cctcgaaatt
    11461 gattttgaag aagaaggtgg ttcaggtgac ggctatgcga aagtgatgtc ggaagagttt
    11521 aaccgtcgtg caatggcgtt atatgccgag caagccaaag aggtggatat tattattacc
    11581 accgctgcca ttccgggcaa acctgctcct cgtttaatca ctaaagagat ggttgattca
    11641 atgaaaccgg gttcagtgat tgttgattta gccgctgcaa ccggtggtaa ctgtgaatac
    11701 accaaagccg gcgagattgt ggtgaccgat tatcaagtga aagtgattgg ctataccgat
    11761 tttcctgcac gtttaccaac gcaatcttcg caactttatg gtactaactt ggtgaattta
    11821 ctcaaactgt tagcaccaaa taaagatggt caaattgaga ttaattttga tgatgtagtg
    11881 ttgcgtggcg taacggtggt gcgtgacggc gaattaactt ggccggctcc gccgattcaa
    11941 gtatctgccc aaccgcaaaa acaagcagcc gcaccacaag cggtcaaaaa agaggaaaaa
    12001 cctgcagacc ctcgagtgaa atatggcgtg atggcagcag caggcgtgct gttcctatgg
    12061 cttgcatctg tggctccggc agcgttttta tcgcatttta ccgtattcgt tctcgcttgt
    12121 gtggtagggt attatgtggt ttggaacgtc agccacgcac tacatacccc attaatggcg
    12181 gtaacaaatg cgatttcagg gattatcatc gtaggtgcgg tattacaaat tgcccaaccg
    12241 accggtaatt tctttattga tattttggca tttattgcga ttttggttgc cagcatcaat
    12301 atttttggtg gctttaaagt aacgcaacgt atgcttgcaa tgtttagaaa aggttaagga
    12361 gaaacgaaac tatgtctttt ggatttgtga ctgctgcgta cattattgca gctattctct
    12421 ttattatgag cttagccggt ctttctaaac acgaaaccgc caaagcaggt tgttggtatg
    12481 ggattgtggg tatggcgatt gctttagtgg caaccatttt cggcccgcaa tcacatggca
    12541 cgatttggat cttaatcgca atggcaatcg gtggattcat cggagtgaaa aaagccctaa
    12601 aagtagaaat gaccgaaatg cctgaattag tggcaattct acacagcttt gtcggtttag
    12661 cagcggtatt ggttggtttt aacagctacg gacttcatac caatgcatta atgcctgcaa
    12721 atttagatga aactgcacaa gcggcatttt tagcggaaca agccactctt gccaatatcc
    12781 acaatgtgga agtgttctta ggtattttca ttggtgcggt aaccttctcc ggttcattgg
    12841 ttgcctttgg taaactaagc ggtaaattat ttggtcgtaa agtctcttct gcagcactga
    12901 atattccaca taaacacaaa tggaatttgg cagccattat cgtttctgtt tttttgatga
    12961 tcgtgttttt aaataatccg cacaatatct tccctgtgct gattatgaca attattgcgt
    13021 tagtcttcgg ctggcactta gtttcttcta ttggtggggc ggatatgccg gtggtagttt
    13081 caatgctgaa ttcttattca ggttgggcag ccgcagcggc aggctttatg ctaagcaacg
    13141 atttattaat cgtaaccggt gcattagtgg gatcatcagg tgctatcctt tcttatatta
    13201 tgtgtaaagc aatgaaccgc tcattcatta gcgtgattgc cggtggtttt ggcaatgaag
    13261 ttcagtctgg caaaggtgat gaagaatacg gtgaataccg tgaaacgaca gccgaagaag
    13321 tggcagaaat gctgaaaaat gcaagctctg tgatcatcac gccgggttat ggtatggcag
    13381 tggctcaagc acaatatccg gtagcggaaa tcaccgcaaa attgcgtgaa aaaggcgtga
    13441 atgtgcgttt tggtattcac cctgtggcag ggcgtttacc ggggcatatg aacgtattat
    13501 tggcggaagc gaaagtacct tatgatgtag tgctggagat ggacgaaatc aatgacgatt
    13561 ttgaagaaac cgatgtggta ttggtaatcg gtgcaaacga taccgtaaac cctgctgcat
    13621 tagacgaccc atcaagccct attgctggaa tgccggtgct tgaagtatgg aaagcacaaa
    13681 atgttatcgt gttcaaacgt tcaatggcag taggctacgc cggtgtgcaa aacccactgt
    13741 tctttaaaga aaatacccaa atgctatttg gtgatgcaaa agaacgtgtt gatgatattt
    13801 tacgggcgtt aaattaaatt taaataaaaa agcgaacata agttcgcttt tttgtgctta
    13861 ggctaacata aattgttaat tttttactct aataccatca atccgggaag agtcgcaaaa
    13921 ctctgcgatt ttacggtatc atggaaatca tctaagtagg ctagggtagc atcggcttct
    13981 cgaatagcgc cataaagggt gctatatagt ccttgctgag ttatttttct tgccaccaca
    14041 taccccctat ctaaatatgg tttaaccgcc caataaggta gtgcagcaat gcctcgccga
    14101 cttgctacta gctgaataat agcaatagtt aactcactat tacgccgagt aactttgatg
    14161 ccagcagggc ctaatatttt tcgcagtaaa tctagcatat catcaggtac tggataggta
    14221 attaatgtct catctttaaa atcttcagct tcccatacat cttttgtggc aagagggtga
    14281 tctttagagc aaatagctac catttcatat gaaaagagag gtttgtatat aataccagca
    14341 ctatcttcct cttcagcgac aattgccaga tctgcacgat ggcttaatag caaaccaacc
    14401 gtatcagtat ggaaacccga tacgatatct aattcaacta gaggccaatg ttgacggaaa
    14461 gtatccattg ccggcattag ccaatcaaaa caggtatggc attctactgc aacacgtacc
    14521 tctccgactt ctccttgttt cactcgggct aaatctaatt cagcctcaat gactttgggc
    14581 aaaatatcgt aggccaactt aattaaacgt tcgccagctg gtgtaaagcg aataggggag
    14641 ctttttcgct caaatagcgt aagatcatac tgttcttcca gtaattttat ttggtgtgaa
    14701 agtgcggatt gtgttaaatg gacacgcttt gctgcaagag atacgctacc gctctctttt
    14761 aatgcgatta atgtccgcaa atggcggatt tcaagaaaaa tcggtttcat aatttattca
    14821 tctaaaagtg aaaaaagatg aaaataatta taacaaacaa gcggtcaaat tctgcaaaaa
    14881 atttgcaaaa tccaaccgct tgtatagagc agtggcgaat tattgggtta attgaactaa
    14941 aatgcggcga acaggctctg ctgcacccca taataattgg tcacctacgg taaatgcagc
    15001 taagtattct ccacccatcg ctaatttacg caagcgacca accggcacgc tcaatgtacc
    15061 ggtcactttc gccggggtta attcacgcaa tgtggtttct ttgtcgtttg gaattacttt
    15121 cacccattca ttgtgggcag caataatttg ctcgatttcc gctaacggaa tatctttttt
    15181 cagcttaatt gtgaatgctt ggctgtggca gcgtaatgct ccaatacgca cgcataaacc
    15241 atcaactgga attgggttat cgcttaaacc taaaatttta ttagtttctg cataaccttt
    15301 ccactcttct ttagtttgcc cggtttccgg taataattta tcaatccaag gaattaagct
    15361 accgcccaat gccgcaccga agttctcggt tgggaagtct tccgcacgca ttttagccgt
    15421 aactttacgt tcaatctcta aaatagaaga ggcaggattt gctaattcag cttttacgct
    15481 atcttctaat tcacccattt gagaaagcaa ttcacgcata tttttcgcac cggcaccgga
    15541 agcggcttgg taagttgcta cagaaaccca ctcgaccaaa tctttctcaa ataaaccacc
    15601 gatagccatt agcattaggc ttacggtaca gtttccgcct acaaatgttt taatgccgtt
    15661 ttttaagcct tctgaaatca catgttggtt caccgggtct aatacgataa tagcatcgtc
    15721 tttcatacgt aatgcagaag ccgcatcaat ccaatagccg ttccaaccgg tttcttttaa
    15781 ttttggatag acttcatttg tataatcacc accttggcaa gttacgataa tgtctaattt
    15841 ttttaattct tcaatgtcaa aggcgttttt taattcgccg gcatcttttc cgccaaaaac
    15901 aggggctttt tgacccgctt gtgaagtagt gaaaaaaaca gggttgatat tggcgaagtt
    15961 attttcttca accatacgat ccattaagac cgaaccgacc ataccacgcc aaccgataaa
    16021 acctacattt tgcattgtgt t
//
LOCUS       DANLUT010000042        15667 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLUT010000042 DANLUT010000000
VERSION     DANLUT010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15667
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            63..773
                     /locus_tag="PXB38_001053"
     CDS             63..773
                     /locus_tag="PXB38_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353386.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTLSVLLFHKHWDHRVFHLDIQKMLSEERFGFFYVF
                     IFIYFSLLSLSIGYIRPELRTTYDYLEIENKRYYVLSIHRNNIYVLGEKTKDNDEFLF
                     FNQDTLKYYRINITKMPN"
     gene            complement(827..1972)
                     /gene="lldD"
                     /locus_tag="PXB38_001054"
     CDS             complement(827..1972)
                     /gene="lldD"
                     /locus_tag="PXB38_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL5353387.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAGKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            2584..3228
                     /gene="rppH"
                     /locus_tag="PXB38_001055"
     CDS             2584..3228
                     /gene="rppH"
                     /locus_tag="PXB38_001055"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL5353388.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            3230..4018
                     /locus_tag="PXB38_001056"
     CDS             3230..4018
                     /locus_tag="PXB38_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5353389.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            4026..4823
                     /gene="lgt"
                     /locus_tag="PXB38_001057"
     CDS             4026..4823
                     /gene="lgt"
                     /locus_tag="PXB38_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL5353390.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGSILIMAWAYKVNKVK"
     gene            4910..5578
                     /locus_tag="PXB38_001058"
     CDS             4910..5578
                     /locus_tag="PXB38_001058"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL5353391.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            5648..5908
                     /locus_tag="PXB38_001059"
     CDS             5648..5908
                     /locus_tag="PXB38_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5353392.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            5905..6237
                     /locus_tag="PXB38_001060"
     CDS             5905..6237
                     /locus_tag="PXB38_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL5353393.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            6364..7395
                     /gene="trpS"
                     /locus_tag="PXB38_001061"
     CDS             6364..7395
                     /gene="trpS"
                     /locus_tag="PXB38_001061"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL5353394.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(7459..8214)
                     /locus_tag="PXB38_001062"
     CDS             complement(7459..8214)
                     /locus_tag="PXB38_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL5353395.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(8270..8797)
                     /gene="ppa"
                     /locus_tag="PXB38_001063"
     CDS             complement(8270..8797)
                     /gene="ppa"
                     /locus_tag="PXB38_001063"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL5353396.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            9014..9089
                     /locus_tag="PXB38_001064"
     tRNA            9014..9089
                     /locus_tag="PXB38_001064"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9047..9049,aa:Lys,seq:ttt)
     gene            9112..9187
                     /locus_tag="PXB38_001065"
     tRNA            9112..9187
                     /locus_tag="PXB38_001065"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9145..9147,aa:Lys,seq:ttt)
     gene            9209..9284
                     /locus_tag="PXB38_001066"
     tRNA            9209..9284
                     /locus_tag="PXB38_001066"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9242..9244,aa:Lys,seq:ttt)
     gene            9377..10411
                     /gene="mltG"
                     /locus_tag="PXB38_001067"
     CDS             9377..10411
                     /gene="mltG"
                     /locus_tag="PXB38_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL5353397.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            10422..11042
                     /locus_tag="PXB38_001068"
     CDS             10422..11042
                     /locus_tag="PXB38_001068"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL5353398.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            11042..12019
                     /locus_tag="PXB38_001069"
     CDS             11042..12019
                     /locus_tag="PXB38_001069"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL5353399.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            12150..12392
                     /locus_tag="PXB38_001070"
     CDS             12150..12392
                     /locus_tag="PXB38_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5353400.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            12385..12669
                     /locus_tag="PXB38_001071"
     CDS             12385..12669
                     /locus_tag="PXB38_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5353401.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEHIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            12674..13462
                     /locus_tag="PXB38_001072"
     CDS             12674..13462
                     /locus_tag="PXB38_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL5353402.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            13472..13993
                     /locus_tag="PXB38_001073"
     CDS             13472..13993
                     /locus_tag="PXB38_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL5353403.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            14068..14769
                     /gene="lpxH"
                     /locus_tag="PXB38_001074"
     CDS             14068..14769
                     /gene="lpxH"
                     /locus_tag="PXB38_001074"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL5353404.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            14766..15551
                     /locus_tag="PXB38_001075"
     CDS             14766..15551
                     /locus_tag="PXB38_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5353405.1"
                     /translation="MINVIIPCYNAENTLVRAVQSVLNQSGLNLLWLIDDASTDNTLA
                     LAKHLQAQVPDKIRVEQMPQNGGVAKARNWGALQSETDLIAFLDADDAYENGALQVAE
                     KIFEFKPETGLVRLALKPVNLDQRYSSHPNFELAWQYMQMTGAGNTVFRRSFFLACGG
                     FPQHQLFQELGGEDGALGIATTQISSVATAFNDVGVLHYCREGMHAERLLNAILFNEK
                     DPNVTEEKVKQANLITENIVNNIRNLQDCLNSKGIGIKPLIYA"
BASE COUNT         4609 a         3358 c         3230 g         4470 t
ORIGIN      
        1 taaactcagt ctgctttctt gtgtttcatc tttaactaag taggtgcaat ctatttactg
       61 ttatgactaa ccagaaattc atcaactctt ctcttactct cgctttcttt actttaatct
      121 ctttttctac cgcttactgt tatgcttggg gtattgctgc ttttcatggc tacccgtggt
      181 ggcatgttga ggttggtaat gccggtatag ctcgcgcact agcctacgtt tttggcacat
      241 ttttaactat ctttcttttt tatttgatag gatacgcttt agttaataaa gtttttaagc
      301 tgcattactt taaatacctt ggctggctac gggtgagtgt tcttgttact atttttagct
      361 tgccagtaat gatcagtttc tatctgttta ttggcaaagt gccaatgtat ttacacctac
      421 tctatctagg gacaactacc ctatcagtat tattatttca caaacattgg gaccaccgcg
      481 tattccactt agatattcaa aaaatgttaa gcgaagaacg cttcggtttt ttctatgttt
      541 ttattttcat ctattttagc ttactttctt tgagtattgg ctacattcgc cctgagctga
      601 gaacaacgta tgattatctt gaaattgaaa ataagcgata ttatgtctta tctattcatc
      661 gcaataacat ttatgtgctg ggcgaaaaaa ctaaagataa cgatgaattt ctctttttca
      721 accaagatac attgaaatat taccgcatta atattaccaa aatgccaaat tagcctatct
      781 aaaataacaa tccgcaccta aaacgtgcgg attgtggcta tttgagctaa agattactta
      841 aatctaccaa agcatctctg ccgatgtcgc taattttagc attgctggta agtgtcatcg
      901 ccactttcat ttctttaagg aagatgtcga gcaggttttc cacaccggct tgaccggcgg
      961 cgctaagagc gtaaacaaag gaacgcccga tcatcgtaca atctgcgccg agagccagca
     1021 ttctcaccac atctaagccg ttgcggatac cagagtcggc aaggattttg atctcccctt
     1081 ttactgcatc ggcaatgctt ggcagggctt tggcagaaga aagtacccca tctaactgac
     1141 gaccaccgtg gttggagacg atgataccgt ccgcaccaaa tcttacggca tctttagcat
     1201 cttctgggtc gagaatgcct ttgatcacca tcgggccgtc ccaaaattca cgaatccact
     1261 ctaaatcttt ccacgaaatt gatgggtcga aattatcggt cagccagccg atgtagttgt
     1321 tcagatcaat cggtttgccc atatagtttg acacattgcc taacgtgtgg ggtttaccgt
     1381 gaatgcccac gtcccacgcc caaaacgggt gaaccattgc ctgcaacaca cggcgaatgt
     1441 ctttgtatgg gccgctcatt ccggagtgca tatcacgata acgtgcgccg ggggtcggca
     1501 tatctacggt aaacactagc gtggaacaac cggcggcttt ggctcgttcc aatgcatttt
     1561 tcataaagcc ccgatctttt aacacataga gctgaaacca catcgggcgt ttgattgccg
     1621 gtgcaacctc ttcaatcggg caaatagaga cagtggaaag ggtaaacgga atacctttgt
     1681 tatctgcggc tttgcccgct tgcacttcgc cacggcgggc atacattcct aatgcaccga
     1741 caggggcgag ggtcaccggc atagacagtt tttcgccgaa cagctcgatg ccggtgtcta
     1801 gttgcgacat atcttttaac acacgttgac gcagggcgat gtcttccaaa tcgctcacat
     1861 tacgacgtaa ggtctgctcg gcgtaagaac cgccatccgc ataatggaac ataaaagggg
     1921 gaacacgacg ttttgccgca cggcggtaat cgtttgcaga tgaaatgatc atttaaaacc
     1981 tcataaatca ttaagaaaaa agtgtggcta ttctacttta aaataaaaat aagaattact
     2041 attatttgca aaatatgaga aatagatcac atttttgtta caaactaatt agcataaaaa
     2101 tacaattgca caaaaagcaa ccaacaaaac aattgattat tcacagattg aaaagatgac
     2161 actaactatt tgatttaatt ataatttatg gaaatagcaa aaggctgatt tgagttattc
     2221 acgcctaatt tgaaaaacta tcacatcttt atccacaaat ggtggggata actctgcttt
     2281 atttacgaag caaaaattgc cctgcttatt cattttaaaa tttaaactta ttttgacgag
     2341 aaaaaacgca acaacttgat ctttatccag atcattgctt aagaaaaaga tcgcattttt
     2401 agatctgatt aattgctctg ttttacaacg ttccgcctgt ttatcctcaa cttataccac
     2461 ttatattcaa tagttatcca caaagttatt cacaagcggt tatattttat ggtttttttg
     2521 caaatcaacc caaagtatga aacaattctc ccattctaga atttttatca attaggtggt
     2581 cgagtgatcg atttcgatgg ctaccgccca aatgttggaa tcgttatctg taataagcac
     2641 gggcaagttc tgtgggcaaa acggtttggt caaaactctt ggcaatttcc gcaaggtgga
     2701 attaatgagg gggaaaacat tgaagcagca atgtaccgtg agctttatga agaggtcggc
     2761 ttaagtaaaa aagatgtacg attgctttgg gcgtctaaat attggctaaa atataaactg
     2821 ccaaaacgct tggtacgtaa tgaaggctct ggtcctgtct gtatcgggca aaaacagcgt
     2881 tggtttctac tgcaattaat cggtgatgaa agcctgatta atttgaaaac cacgaaaaat
     2941 ccggagtttg acggctggcg ttgggtcagc ttttggtatc cagtccgcca agtggtctct
     3001 tttaaacgag atgtttatcg caaagcgatg aaagagtttg cacaggtttt gcaaaacaat
     3061 attcaaaaag cgactgacga taaaaccggt gagaaaccac gcattgagcg tggcgagact
     3121 tcgccccata cttataaaaa aacctctcag gattctgcca aagcctataa acgagaagct
     3181 cgtaagcctt atcgtccttg gcatcaacat aatcaaaaag gaaaataaga tgactatttt
     3241 attaagctgc ctttttttag gggtgtttgt cggcttttta gccggcttgt tcggcattgg
     3301 tggtgggtta atcatcgtgc cgagtttggt cttcctactg cccatggcag gtgtaccgcc
     3361 ggaatatata atgtccaccg cactcggcac atcattttca accattatta ttaccgcctt
     3421 tgcatcggca caacgccatc ataagttagg caatgtcgat atccaaacca gtaaatattt
     3481 tattccagcg ttgatggttt cggtttttct atcgggcttg gtggtaagcc gcctcgatcc
     3541 gcaactgatg tctagaattt ttgcggtaat ggtactttac cttgcaggta aaatgatttt
     3601 ttcaataaaa agagcaccga aaaataaacc acttaccgtt caaacgacga taatcggagg
     3661 ttcaatcatc ggtgcgttag ccagtatggc agggatcgca ggtggagcct ttattgtacc
     3721 atttttaaac gatcgaggct tagaaatgaa acgtgccatc ggcacttcct cattttgcgg
     3781 agcattttta ggtttatctg gcacaatcag ctttattgta agtggctggg gcttagaagg
     3841 aatgcctgat tattctctcg gttatgttta tttaccggct ctgtttggta ttacggcaac
     3901 ttcatttttc acctcaaaaa tgggggcaag tgccgccaac gctctacctg tgccgatgct
     3961 gaaaaaagcc tttgcggtgc ttttggtctg tatcgccatc aatatgtttt taaaataagg
     4021 acactatgaa cgaacaattt atccaatttc cacaaattag cccgattgtg tttgaaatcg
     4081 gtccgattgc cctgcgttgg tatgggctaa tgtatttagc cggctttgcc tttgcctact
     4141 ggctgggaat gagacgggcg aaaaattcca atggagtttg gacaaccgag caagtggata
     4201 gcttagtcta tacttgcttc tggggcgtag tattaggtgg gcgtatcggc gatgtgttct
     4261 tttatagctt cgaccgtttc ttacaagatc cgctctacct ctttcgcatt tgggaaggcg
     4321 gaatgtcctt tcacggcggt ttaatcggcg tcattgtagc aatgatttgg gtttcctacc
     4381 gccaaaaacg caatttctgg cagacagcag attttatcgc accgctagta ccgttcgggc
     4441 taggtatggg gcgtatcggc aatttcatta acgatgaact ttgggggcgt gtaaccgatg
     4501 tgccttgggc ggtgttattt ccaagcggtg gctatcttcc ccgccacccg tcacagcttt
     4561 atgaagcctt tttagagggt gtggtgttac tctttatcct caactggttt attcaaaagc
     4621 ctcgcccggc aggtgcggtt tcagggttat ttttaatcgg ctacggcaca ttccgcttta
     4681 ttgtggaata cttccgagaa atcgaccata acgtcaatac caccgcagat ttaatcactc
     4741 gtgggcaact actctcttta ccgatgatta tcggcagcat actgattatg gcgtgggcgt
     4801 ataaagtaaa caaagtgaaa taaacgtagg ggcaagtcaa tatttgccct cattacaaaa
     4861 attgcaaaaa atttgcagaa aacgaccgct tgtgtttgaa ggatatacta tgagtaaaaa
     4921 atacaaagtc atcggtttcg acttagacgg aacgctaatc aacaccctcc ccgatctcac
     4981 tcttgtcgcc aattcaatgt ttctagaagc cggtttgcca acggttacac aagaaaaagt
     5041 gctgacttgg atcggtaaag gggcagatat tttcttccaa aatgcggttg ctcacaccgg
     5101 cagaattttc caagccgatg agttggtgaa aatgcgagtg agctttgata aatactacgc
     5161 cacctatgtg tgcgaggaaa gcaccctttt cccaaatgtg aaagaaacct tagaaatcct
     5221 caaagcaaac gactacccgc tggtggtgat taccaacaaa ccgaccaaat tagtcgagcc
     5281 ggtgctttcc gctttcggca tttatcattt attcgatgaa acccttggtg ggcaatcgct
     5341 ccccaaaatc aaaccgcacc ctgacccgat gttttttatc tgcgaaaaat tcggcattac
     5401 cccatcagaa ttactttttg tcggcgactc agaaaatgac gtgattgccg ccaaagccgc
     5461 cggttgtgat gtggttggac taacttacgg ctataactac aatgtgccga ttgaacaatc
     5521 taacccgact tttgtgacat ctgaatttaa agatgtgttg aaaattgtgg ggttataaag
     5581 aaaacatttg ttttcttttg atgtttgctt tagactttcc gaacctaaag atttaaagga
     5641 gtaaagtatg ccaacaatcg cattacgtca ggtcggtggc tcggttgcaa tggtgattcc
     5701 gcctgctttt ttagaggcac tcaagctctc cgtcggtagc aaagtggatt tgtctttaaa
     5761 cgacaaccaa ctcgtgatta atcctgcccg cccaaaagtg aaatacagct tagaggaatt
     5821 attaagacaa tccgattttg aggcagcaag gaatgaagaa agccaatcgt ggttatccga
     5881 gccggcaata ggaaaagaaa ttttatgaaa cgtggcgata tttactggct cgatcttgat
     5941 ccaaccttag gacacgaaca atcaggcttc cgccccgttg taattgtttc cgcaactgca
     6001 tttaatctag ccagtaaact gcctgtggtt gtgccgatta ctaacggtgg agcttttgct
     6061 gaaagactgg gctttgccgt ttcattaaaa gatgccggct taaaaacaac agggattatt
     6121 cgatgcgatc aacctcgcac agtcgatatt gcacaacgcc atggaaaatt tatcgaagcc
     6181 ttacccgaaa gcctacttga tgaaattatg gcaagggttt cagtgatttt tgagtaagat
     6241 acaagcggtc tgatttgctc tattttttgc aaaatcatca ataaatctga ccgcttgtac
     6301 ttttatccct tcccaataac cgttaagata acctatattt ttcaaatcaa acgagaagat
     6361 aaaatgagca aacctattgt atttagtggc gtgcagccct caggtgaatt gactatcggt
     6421 aactacttag gggcgttacg caactgggtg aaaatgcaag atgattatga ctgtgtatat
     6481 tgcattgtcg atcaacacgc cattaccgtt cgtcaagatc cggagtcgct acgcaaatca
     6541 actttagatg tgttagccct gtatttagct tgtggcattg atccaaacaa aagcactatt
     6601 tttattcaat cccacgtgcc ggaacacgcc caattagctt gggtgctgaa ctgttacacc
     6661 tatttcggtg aaatggggcg tatgacgcaa tttaaagata aatcggcacg ctatgaagag
     6721 aatgtcaatg tgggcttatt tacttatccg gtattaatgg cggcagatat tctgctttac
     6781 caagccaacc aagtgccggt aggcgatgac caaaaacaac atttggaaat cacccgtgac
     6841 attgccaacc gtttcaatgc cttatacggc aaaaaagatt ccgaaggcaa cctgatcgag
     6901 cctgtttttg cagtgccgga agtctttatt gcgaaatccg gggcaagagt gatgtcgcta
     6961 cttgagccga ccaaaaaaat gtcaaaatcg gacgataatc gtaacaatgt gattggacta
     7021 ttggaagatc cgaaagcggt agcgaagaaa atcaaacggg caatgaccga tggcgatgaa
     7081 ccgccagtag tgcgttatga cgtacagaat aaagccggtg tctcgaattt attggatatt
     7141 ctctccgcca ttaccggcaa aaccattgcc gaattagaaa ccgaatttga aggcaaaatg
     7201 tatggtcatt tgaaaacaga agtagcagat aaggtttccg aactattaac caatctgcaa
     7261 gaacgttatc accactaccg ccaagatgaa gcattattgg aaaaaatcta ccgtgaaggg
     7321 gcagaaaaag ctcgagctca agccaaagca acgttagata aggtatatga attagtcggt
     7381 tttgtgcgtt actaacactt aatgaaaaat gctcttgagg attcaagagc atttttgcaa
     7441 aaaagaaccg attgtcaatt atttacgggc gttataaatc ttcattgctt ccggcacaag
     7501 gcgggctaag ttttcttgac ggtcagcatt tgatgggtga gttgagaaaa tggacaagcc
     7561 tgaatcgcca ttggctttac tcatttttac ccaaacattc ggcgctgctg atgggttgta
     7621 gcctgattct gccattaaaa ttaacccaac ttcgtccgcc tcagtctctt ggctgcgaga
     7681 gaatggcttg gtggcaatca aatccacgcc agtgctgagt aaaccttcgg tgcttacgcc
     7741 tgttgaggca gtcacagcca catctgcaat agcacctaca atactggtaa tagcgctaac
     7801 cgtacggtct gatttaccgt gttctttcag tgcgtgagcc atctcgtgtc ccattaccac
     7861 tgcaatttca tcgttcgata aattaagtct ttccactaac cccgtgtaaa acgccatttt
     7921 accgcccggc atcgcccacg cattgagttc atccgatttc aatacggtaa tttcccaatg
     7981 aaaaggtaca ccagtctggt tggctctttc cgcataaggc ttcattttat gaaaaacagt
     8041 gtgaatccgc ttagcggtgg cagacgaatt gtcaatcgca ttttgctgac gagcttgggt
     8101 tttcacttga gcataacttt gagccgcttc ttggttaatg ctttctgttg tggcacaagc
     8161 ggtaatcact gttgctaaaa aaactgaata acttaatttt ttgatgaatt tcattttata
     8221 tcccacaaaa aatgccaaac aaatttgctt ggcattcaaa aataaataat tatttcttag
     8281 cacgctcgaa tgattctaag atttcttggc gagcttcgtt tacatcgccc caaccttcta
     8341 ctttcaccca tttgcccgct tctaatgctt tatagctttc gaagaagtgc tggatttgtg
     8401 cttttaataa cgccggtaag tcacctacat ctttgatgtg gtcatactct ttacttaatt
     8461 tggtgtgtgg aacagcaacc acttttgcat caccgccggc ttcatcggtc atttttaaca
     8521 caccgacagg acggcaacga atcaccgaac ccggttgtaa cggatatggt gttggcacta
     8581 atacatcaac cgggtcaccg tctgatgata aggtgttatt cacataacca tagtttgccg
     8641 gatagaacat tgcggttgcc ataaagcgat ccacaaataa tgccccggtt tctttgtcca
     8701 cttcatattt gattggatca gagtttgccg gaatttcaat tacaacataa atatcgtccg
     8761 gtaattcttt accggcagga actaattcta agcccatttt ggtttccttc tataataggt
     8821 gaaataaacg gcgtgattat agcctatttt cagaaaaaga taaaagcccg tttctctttt
     8881 cattttccgc caacaaatcc ggctaatttt ttgctaaatt gcttacaaac cgcacactca
     8941 accatttttc gataaaaaaa acttgccaaa gttttaaaaa tccgtaagat atgccctcgt
     9001 tacgcaagat tatgggtcat tagctcagcc ggtagagcag cggactttta atccgttggt
     9061 cgaaggttcg aatccttcat gacccaccat taatcttcaa aacacctcta agggtcatta
     9121 gctcagtcgg tagagcagcg gacttttaat ccgttggtcg aaggttcgaa tccttcatga
     9181 cccaccatta atttcaaaac tcctctgagg gtcattagct cagtcggtag agcagcggac
     9241 ttttaatccg ttggtcgaag gttcgaatcc ttcatgaccc accatttact caaatcccat
     9301 ttgcaaattt ttctgaaaaa acaaccgctt tatagtagaa ttcagtcaat ttttatcact
     9361 tttattttat tcatcaatgc taaaaaaaat ccttattgca ttaggcttag ccggcgttat
     9421 tgcttgcggt ggactgtttt acggctacca aaaactcacc tctttagccg aacacccgat
     9481 cacggttcag ccgaatcaac ttttcgtatt ggaaaaaggc gtttccagcc aaaaattagc
     9541 ggctctgtta gaagagcaag gcattgtcac ccacgatgac gccgatctta tcccttattt
     9601 aatgcgatta taccctgagt taagcaaatt caaggctggt gcttattcac tcgcaggctt
     9661 aacgacagta aaagatttgc tcgctcattt aagctccggc aaagaagtgc aacttaacgt
     9721 gcaatttatt gagggcaaaa cttttaaaat ttggcgggaa caactagcga aagccgatta
     9781 tttacagcac acgctacaag gcaaatcgga aaaagaaatc gctgacttac tcggcattcc
     9841 acacgaaaaa atcgaaggtt ggatagcccc ggatacttac aactacacgc ccaattccac
     9901 cgatttagcc ttgcttaaac gggcttatca aaagcagaaa acggcgttgg aacaggcttg
     9961 gaaaaataga gcggaaaatc taccgcttgc aacaccatac gaaatgctga ttcttgcctc
    10021 gattgtggaa aaagagaccg gcattgcgac cgaacgccca caagtggcat cggtctttat
    10081 taaccgttta cgcaacaata tgcgactgca aaccgatcca accgtcattt acggaatggg
    10141 cgatcgttat aacggcaata tccgccgcaa agatttagaa gaggcaacgc catacaatac
    10201 ttaccagatt gacggcttac cgccaacgcc gattgccatg ccgagtgaag cttcgattaa
    10261 agcggttgcc aacccggata atacacccta cctctatttt gtggcagacg gcacgggcgg
    10321 tcataaattc agcaaaacac tgaatgagca taataaagcg gtggcagaat ggattcaaat
    10381 tgaacgcaaa cgcaaaaatg aacaaaaata gtgagaacaa tatgcgtgga aaatttattg
    10441 taattgaagg cttagagggc gcaggcaaaa cgactgctca ccaagtgatt ctcaaagagt
    10501 tggaacaagc cggcattaat gacgtagtaa tgacccgaga acccggcggc accccccttg
    10561 ccgaaaagtt acgccattta attaaacacg aaaccgaaga agccattaac gataaggctg
    10621 agctgctaat gctctacgct gctcgtgttc aattagtcga aaatgtgatc aaacctgccc
    10681 ttgccgaagg caaatgggtt ctgggcgacc gccacgatat gtcttcccaa gcctatcaag
    10741 gcggtggacg taagttggat cgtcacttac tcgaaacctt aaaagaatcg gtactcggca
    10801 cattcgagcc agatttaacg atttatctcg atctcgatcc ggtgattggt ttagaaagag
    10861 ccagaggcag aggcgaatta gaccgcatcg aacagcaaag ccttgacttc ttctaccgca
    10921 cacgagagcg ttatttagaa ttaacccaac acaacgataa agccgtgatc atcaatgccg
    10981 aacaacccat cgaacaggtg actgcggata ttcaacaagt aattagaaac tggctgaaat
    11041 aatgtaccct tggctcgaaa gcacttatca acaacttacc gattcatttt tacaggggcg
    11101 aggtcatcac gccttactgt tcaaaacaga tgttggtctt ggtacagaca ccttaatcta
    11161 caaggtggct gaatggttgc tttgcagcca aaaactccgc catcaacctt gtcttgaatg
    11221 caaaagttgc ctgcttatgc aaagcaacaa ccaccccgat ttccacattc ttgagccgat
    11281 tgaagacaaa gatattggta tcgaccaagt gcgtgagttg atttataaac tccagaattt
    11341 cgcccaacaa gggggaaata cggtcgttta tattcgagga gttgatcgtt taaccgaggc
    11401 aagcagtaat gccctgctca aaaccttgga agagccacgt gaaaacgtct atttcttgct
    11461 cgaagcaccg cttcaagcaa cagttttagc taccattcaa agccgcagcc aaacttgggt
    11521 actttacgcc ccacaagcct cagaagtaat ggcttggcta caaacacaat ttccggcaat
    11581 ctcaaccgac gacttagaga ttgcactccg cctttgccac tcacgcccac taatttgcaa
    11641 aaattttatc gaaaatgacc gcttgcaaca gcgaaaaacc tttttgcaaa ccttctggcg
    11701 tttctacaaa agccacgatg tcttcttgtt attccaagcc ttcgcccaag aaaaagagct
    11761 gattttacag caactcgaat ggctggaaag tttctttagc gatgccctaa aagctaaaat
    11821 ggcaatcagc cacggttggc taaacccgga tctccaaaac ggcattctcc cttttagcca
    11881 acaactaacg acccacggct tacttaaagg gcatcaaatt ctccaacaaa cccagcggga
    11941 tttaaccgaa attaacgccg tcaatccgga attgatgttg ctagattgcc tgacgaagtt
    12001 ggttttggtg tttgagtaaa agccctctct catagaaggt agctttcaat tagccgtaaa
    12061 aagaggcttc tagccctata atatagttta taacttgcaa aattatctat ctttgttatt
    12121 gtatgaataa ttcacacaag gagaatatta tggcaagaac aaccagcgtg actttaggcg
    12181 aacctttaaa tgattttgta aatgaaatgg tggcaagtgg gcgttatggc tctaccagtg
    12241 aagtagtgag aaccgcttta cgaatgcttg aggaaaaaga gcaatactta gctcagttgc
    12301 gacaagccat tgatgatggt gatgctagtg gttatgcaac cgaaacgatt gatgaaatga
    12361 tgttgagagt aaaggcggaa cttaatgtat aaactttctg ctcaagcact ccgagatcaa
    12421 gagaaacttt ttcgttacag tatctctcaa tttggtgttc aacaaacaga atcttatttt
    12481 gcagatctaa agcatatttt gaatttatta gctgattttc caacaatggg aacttctgcg
    12541 gaacatattc gtggtggctt gcgaatgcac acacatcaat ctcatacaat ttattatcga
    12601 ataaaagcag atcatatatt tattgttcgc atcttacata accaaatgaa tcataaacgc
    12661 tatatttaga aaaatgaaag acttatttat catagactca cattgtcatc tagattctct
    12721 agactacgaa actcgtcaca aaaacgtgga cgaagtaatt gaaaatgcca aagcccgagg
    12781 ggtgcatcat tttatctcgg tttgcactac agttgggcgt tttgaagcaa tgaaaaactt
    12841 aaccgcccat cgtaatgacg tttcactttc ttgtggcgtt cacccgttga atgtggaaga
    12901 tgaacctttt gattacgata aattatttca gttcgctcaa gatccgaaag tggttgccat
    12961 tggggaaact ggtttggatt atcactacac accggaaacc aaagcgttgc aacaatcgct
    13021 tttcgttcaa caaattgaaa ttgcaaacaa actcaataag ccactcatta tccattctcg
    13081 ttcggcacgc caagatacga tggatatgtt ggaacaaaat aatgccgaaa aatgcggtgg
    13141 ggtgttgcat tgctttaccg aagattgggc aatggcaaaa cgggctttag acatcggctt
    13201 ttatatctca atttcgggca ttattacttt ccgcaatgca gaagaactcc gagaagtcgt
    13261 gcgaaaagtg ccgttagatc gcttattggt tgaaacagat tccccttatc ttgccccgat
    13321 tccttatcgt ggtaagccga accagccggc gtatgtgcgg gaaacttgcg aatatgtggc
    13381 gacattaaaa ggcgtttcaa ctgaagaatt agctcgcatt acaaccgaaa atgtgcaaca
    13441 cttattcaac attaaattat aaggaactaa tatgagagca atacttaagt attttctgat
    13501 tcttgtctca ctatcatttt ttattgtatt aggcggtgca gttaattatg caatgccaag
    13561 ttatgaagat accgtagtaa caggtatgga agtacgccga atggataaag atggtattat
    13621 cagcaaagcg aatcctgctg atggcgaggt gcgcgatgtt tatttcttat tcacggaaga
    13681 tcctgaaacc aaaaaggtaa tggtttatcg taatgaagat accggctggg ggttgcctcc
    13741 ttatttcaaa ttcggatctg ccgacattca agccaaagct caagcctacg ctaacgaaaa
    13801 acaacgtgtg caaattaaat attacggctg gcgaatcaat tggctaaatg aatttagaaa
    13861 tattgtttca atcaagccat tagaagaagc agaaacagtc agcaaaccaa ttatgagcta
    13921 tgtactttat gccgtattgg cgttcttgtt cttcctctca gtacaattta ttcgtggcat
    13981 ttttaaagat taatgccgat taacctttga caaacggttc gattttgtaa aaaattgaac
    14041 cgttttcttt tttatcaaca atatcaaatg acgtactatt ttattgccga tctccactta
    14101 aatgaaaatc agcctgaaat tacccacctc tttttgcaat ttatgcaaga aaaagcacta
    14161 cttgcagaag cggtttatat cttaggtgat ctgtttgatt tctggattgg cgatgatgag
    14221 cagtctgaac tcatttcaac cgttaaacag gcaatcaaaa ccctcactac aagcggtaca
    14281 aaatgctatt ttatttgcgg aaatcgtgat tttttaattg gcaaacgatt cagcgaacaa
    14341 acgggtatgg ttattttgcc tgattatcac gttatagatt tattcggcac atctaccttg
    14401 ctttgccacg gcgatacgct ttgtactgat gatgtgaaat atcaacaatt tcgtaaaaaa
    14461 gtccaccaaa aatggcgaca agctatcttt ttgatgtttc cgctttcttg gcgaattcgt
    14521 attgcggaga aaattcgatc caaaagcaaa caagaaaagc gtgataaatc cgctgaaatt
    14581 atggacgtaa acgctgaagt taccgctcaa attgtcgcaa aatacaatac aactcaactt
    14641 atacacgggc atacgcatcg acaagcaatc catcagcata atggatttac ccgcattgta
    14701 ttaggcgact ggaaagaaaa ttacgcctct attttaagcg taaccgagca aggagctgaa
    14761 tttatatgat taatgtgatt attccttgct ataacgccga aaacaccctt gttcgtgcag
    14821 tgcaaagtgt attaaatcag tctggattaa atctattgtg gcttattgat gatgcttcaa
    14881 cggataatac gcttgcctta gctaaacatt tacaagccca agtgcctgat aaaattagag
    14941 tggaacaaat gcctcaaaat ggcggtgttg ccaaagcacg caactgggga gcattacaaa
    15001 gtgaaacaga tttaattgcc tttttagatg ctgatgatgc ttatgaaaac ggggcattgc
    15061 aagttgctga aaagattttt gagtttaaac cggaaaccgg cttggttcgg ttagcattaa
    15121 aaccggtaaa cttagatcaa cgttacagct ctcaccctaa ttttgagtta gcttggcaat
    15181 atatgcaaat gactggtgca ggcaacactg tatttcggcg tagtttcttc ctcgcttgtg
    15241 gcggctttcc acaacatcag ctcttccaag aattaggtgg agaagatggt gctttaggca
    15301 tagccactac acaaattagc tctgtagcta ctgcatttaa tgatgtcggt gttttacatt
    15361 actgccgaga gggtatgcac gcagaaagat tattaaatgc gattttattc aacgaaaaag
    15421 atcccaatgt tactgaagaa aaagttaaac aagccaacct aattaccgaa aatattgtta
    15481 ataatattag aaatctacaa gactgtctta atagtaaagg gattggtatt aagcctttga
    15541 tatacgcttg aatggagcta aaaaagcatt tgcagatttt ccctaaaaaa acaaccgctt
    15601 gtattcttga gccttctttc ctctccgata acaagcggtc attttccgtg agttttttac
    15661 ctttacc
//
LOCUS       DANLUT010000043        15522 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLUT010000043 DANLUT010000000
VERSION     DANLUT010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15522
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1461)
                     /gene="hrpA"
                     /locus_tag="PXB38_001076"
     CDS             complement(<1..1461)
                     /gene="hrpA"
                     /locus_tag="PXB38_001076"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5353406.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDRYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDEDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSPARGGG"
     gene            complement(1565..2017)
                     /locus_tag="PXB38_001077"
     CDS             complement(1565..2017)
                     /locus_tag="PXB38_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL5353407.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQSSAVTISATVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(2080..2349)
                     /locus_tag="PXB38_001078"
     CDS             complement(2080..2349)
                     /locus_tag="PXB38_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353408.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(2447..3043)
                     /gene="grpE"
                     /locus_tag="PXB38_001079"
     CDS             complement(2447..3043)
                     /gene="grpE"
                     /locus_tag="PXB38_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL5353409.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            3265..4359
                     /locus_tag="PXB38_001080"
     CDS             3265..4359
                     /locus_tag="PXB38_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5353410.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            4495..5886
                     /locus_tag="PXB38_001081"
     CDS             4495..5886
                     /locus_tag="PXB38_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL5353411.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVLGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNWIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIISLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            5945..9469
                     /gene="recB"
                     /locus_tag="PXB38_001082"
     CDS             5945..9469
                     /gene="recB"
                     /locus_tag="PXB38_001082"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL5353412.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALAQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAELASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(9511..9993)
                     /gene="greB"
                     /locus_tag="PXB38_001083"
     CDS             complement(9511..9993)
                     /gene="greB"
                     /locus_tag="PXB38_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL5353413.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(10044..11324)
                     /gene="pepB"
                     /locus_tag="PXB38_001084"
     CDS             complement(10044..11324)
                     /gene="pepB"
                     /locus_tag="PXB38_001084"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL5353414.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLKSCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFANIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(11463..12284)
                     /locus_tag="PXB38_001085"
     CDS             complement(11463..12284)
                     /locus_tag="PXB38_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL5353415.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWKVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            12432..13376
                     /locus_tag="PXB38_001086"
     CDS             12432..13376
                     /locus_tag="PXB38_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HDL5353416.1"
                     /translation="MQTLLKFTQFISKTFAIWVVFFAFIAAQFPETFKQFLPWIPYLL
                     GIVMLGMGLTLTFKDFAEVTKNPKSVIIGVIAQFVVMPSVAYGLAKAFNLPADLAIGV
                     ILVGCCPGGTSSNVMTYLARGNTALSVACTTISTLLAPVLTPAIFYLFASQWLEINAT
                     AMFISVLQMVLLPIFVGVVIRTIFKQKVEQFSQTMPLISVIAIVLIVTAVVSVSRDRI
                     IESGLLIFAVVALHNGLGYLIGYLASRLLKLPIADSKAVAIEVGMQNSGLGAALAALH
                     FKANPIIAVPSAVFSFWHNISGPILAMIFAKMKNDNEK"
     gene            complement(13489..14652)
                     /locus_tag="PXB38_001087"
     CDS             complement(13489..14652)
                     /locus_tag="PXB38_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5353417.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(14718..>15522)
                     /locus_tag="PXB38_001088"
     CDS             complement(14718..>15522)
                     /locus_tag="PXB38_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5353418.1"
                     /translation="FRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFATGRN
                     HPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDDQNVC
                     LNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEALVPI
                     EHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGDGMND
                     VEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         4299 a         3149 c         3329 g         4745 t
ORIGIN      
        1 ccctcccccg cgagcggggg aggggatttt ttcatttgga ataatcgcct gtaactcctc
       61 caacaaccga atcccgtcct gaatttgtcg gctatcaggg gcatcaacaa acgggaaatt
      121 ggcaatatcg ctcaatccaa gcgaagtcat ttgcaaaata acggcggcaa ggttagttcg
      181 cagaatttcc ggatcggtaa attgcggacg gctgttgaaa tcctcttccg aatagaggcg
      241 gatacagatc ccttccgagg ttcgcccaca acgcccttta cgctgattgg cggaggcttg
      301 cgaaatcggc tcaatcggca ggcgttgcac tttggtgcgg tagctataac gagaaatacg
      361 agccgtgccg gtgtcgatca catatttaat attcggaata gtgagcgagg tttccgccac
      421 gttggtcgcc agaataatgc ggtttagccc accgcttggc tggaaaatcc gttgctgttc
      481 ggcagccgac aagcgggcgt aaagcggtaa aatttcacta tgtcgcagtt cctgcttttg
      541 caaggcttcg gcagtgtcac gaatttcccg ttcaccgttc ataaaaatca gaatatcgcc
      601 acgcccttcg gcttgcagtt cgtccaccgc atttagaata ccttgcagtt gatcttcatc
      661 ttccactatc gggcgataac gcacttccac cgggaatgtc cgaccagaga cttcaataat
      721 cggggcgttg ttgaaatgtt tggaaaaacg ttctacatca atagttgccg aggtgatgat
      781 cactttcaga tcggggcgtt tgtgcagaat ttgtttcaga taacccaaaa taaaatcgtt
      841 gttcagcgaa cgctcgtgag cttcgtcaat aatcagcgta tcgtactgat ttaaatagcg
      901 gtcgtgctgg atttccgcca gcagaatacc gtccgtcatt agcttgatta agctgttttc
      961 actgacttga tcgttaaagc ggactttgta accgaccgtc tcgcccagtt ccgatttcag
     1021 ctcttcggca atgcgagtcg ccaccgaacg tgcggcaatt cggcggggct gggtatgccc
     1081 aatcaagccc ttcaccccac gcccgagttc taagcacatt ttcggtaact gggtggtttt
     1141 gcccgaaccg gtttcccctg cgatcaccac cacctgattt tcgctaatca gttttaaaat
     1201 ttcctcacgg cgagcggaaa caggcagatc agggtagtca attttcaggt tttgggcgtg
     1261 ctgagttcgt gcgaaaaaac gtgcctgaca agcggtgaga tcttgcgaaa tttctgccaa
     1321 aactgaccgc ttgtgatcga tgtttttaat attttccgcc ccttttaagc gaccgagcag
     1381 gcggcggaaa tcggcggtgg tgatattttc cagcttcaca agcggtggtt tcttatgatt
     1441 tttttgcaaa ggtgtttcca tttaatttct cttttgcatt aagaccttgt gatttattgt
     1501 agggggggcg taagcccacg taacagaata gggattttat gcgtggactt acgtccaccc
     1561 tacattaggt tttaccaaca atcagtgaca aaatccctgc cgcaatcaac ggcccgaccg
     1621 gtacgccttt taagaacgcc acgccgatca ccgtgccgat taaaagccca gttaccaaca
     1681 ccggctggct gcccattaaa ttcacgcccc tgccacctag ccacgctacc agcacgccag
     1741 caattattga gagtgccatt ttccagttca atagttgggc aagttcggga agcgtaattc
     1801 gccctgaaac caaggggcta agtacgccga tggttaaaat gataatcccg atttttaagc
     1861 cgtattgatc gacaaagggg ataaatttag aaagtaaggt ttgttgcata atcagcaata
     1921 cggtggctga aatagtaacc gcactgcttt ggctgatcag ccctaaaata atcagcacca
     1981 caagtagaag tgccactgcg ttaaattgta aagtcatagg attaaaacgt aaaaaccctt
     2041 acttcataga agtaagggag tggttaatta aacgttgagc tagttaataa atttcattat
     2101 tgccattaaa aagccaagaa ttgtgatatt taaggtaatt gctttaaata tcgtggtatt
     2161 gatttcattt tttagctttt caagttcaag ttgcaaatca gcttttgttg ctagtgggct
     2221 ttgactttgc tctaaggctt catcgagagc attagcaaat gcctcagcca tttcaggtgt
     2281 ttgattggct tcttgcaagc gttttacaaa acgtaatttg tcaaatcgta ggctcatagc
     2341 tgcatccatt tcaattatcc tcttgtggtt aagttataaa ctaatttagc ataatcacaa
     2401 gcaggaattt taggagattt tgtgatcttc gtcgaaaatc gacaatttag tttgccacca
     2461 tcaccattgc cgggcgaatc actcgtccgt gaagcgtgta gcctttttgt agcactgtgc
     2521 tgacatggtt ggcttcaatt ccttcggcag gttgcattga aatagcttcg tgcaattcag
     2581 ggttaaatgc ctcgcctact tcgccaattg ccaccacacc aaatttagcc agtgtattga
     2641 tgaattcttt atgagtcatt tcaacgccgt caactaacgc ttgagtggtt tcatcggtca
     2701 cggctttatc aagggcatct aatccacgtt caaggttatc aaccactgtt aacaattctt
     2761 tggagaattt ttctaaagcg aatttgtgag ctttttcaac atcttgctct gcacggcggc
     2821 ggatattttg aatttctgct tgagccctaa gctgaatatc ttgctcacgt ttgtcggctt
     2881 ctgcaatata ggcttctaac tcggcaattc gagcttgagc gagagctaac ggttcttctt
     2941 gaggtgtatt ttgttcttcc gcttgagttt cttcagttac aacttcaggt tgaatttctt
     3001 cttgttttac ttcttcttgt aagtgttcat tttgagtggt cattttttat cctttaaaag
     3061 actaatctgg aaatgtaaat cttccttaat atagcgataa attaagggat ttcaagcata
     3121 tctctttctt tttgcgaaaa taattcactt tttaatcaga aaaggcttgc aaaatacggg
     3181 ggggggctta aaatgcccta gtcttttccg cccttaggta aggctatatt ttttaatcac
     3241 ttttctttaa cggagaaaac ttaaatgaaa aaattagcgg gtttatttgc agcaggttta
     3301 gcaacagttg cattaacagc gtgtaatgaa gaaaaagcgg cagagccaaa agcaactgcg
     3361 gctgaagcaa aacctcaagc aacaaatcaa acagttcacc tttatacttg gactgaatat
     3421 gtgcctgaag gtttgttaga tgaatttacg aaagaaaccg gcattaaagt tgaagtttca
     3481 agtcttgaat ctaacgaaac aatgtacgct aaattaaaat tacaaggcaa agatggcggt
     3541 tatgatgtaa ttgctccatc aaactacttt gtatctaaaa tggcgaaaga aggaatgtta
     3601 gcggaattag atcacgcaca acttccggtt attaaagaat taaaccaaga ttggttaaat
     3661 aaaccttacg atcaaggaaa caaatattca ttacctcaat tattaggtgc gccgggtatt
     3721 gcatttaata cggcagatta caaaggtgaa acattcactt cttggggtga tttgtggaaa
     3781 cctgaatttg caggtaaagt acaattatta gatgatgctc gtgaagtatt caacattgcg
     3841 ttattaaaat taggtaaaaa cccaaataca actaatccgg atgaaatcaa agaagccttt
     3901 gaagagttga aaaaattacg tccaaatgtg ctttcattta cctctgataa cccggcaaac
     3961 tcatttattg ctggtgaggt ttctgtaggt cagttatgga acggttctgt acgtattgcg
     4021 aagaaagaaa acgcaccggt tgatatggta ttcccgaaag aaggtcctgt gctttgggtc
     4081 gatactttag ccattccggc aaatgcgaaa aacaaagaaa atgcacataa attaatcaac
     4141 tacttattaa gtgcaaaagt agctgaaaaa ttaacgttag cgattggtta cccaacttca
     4201 aacgtagaag cattaaaagt attaccgaaa gaaattactg aagatacagc aatttaccca
     4261 tctgcagagg ttttacaaaa atctcaatgg caagatgatg ttggtgatgc aattgagctt
     4321 tacgaaaaat actaccaaga gttaaaagca gcaaaataat agctgattaa ttctgaagcc
     4381 tctagggagc aatctttaga ggctttctct tttgagttgc aaaaaatttg gcaaaaacga
     4441 ccgctttcta aggtacaatc ataaaaacat acttagattt tgagagatta aaccatgaac
     4501 ttaagatggc aagaatatcc tgaaaatgcc cgcaaattat ttaaactatc cctacccatt
     4561 tttatttccc agctttcagc ttccggaatg gggctggcgg atattgtaat ggctggcttg
     4621 gtgagtgatg atgatgtctc ggcgattgcg gtaagtaatt cgatttactt tccgctcttt
     4681 ctgtttgtat tagggttgct gaatgcaatt accccaaccg tttcttactt aaacggctcg
     4741 agcaatcgcc atttaattgc taaccaagta aggcagggct attggattgt gtttgcaatg
     4801 tctattccat taatggcaat tttcctaaac agccatctga ttttagactt aatgcaaaca
     4861 ccggctgagt tttcaatcaa atcgcaacaa tatttagcag taatggcagt tgggcttatt
     4921 cctgctttgc tggcggtgag tttacgttgt atgaacgatg gattatctaa ccctaaacct
     4981 gcgatgcgga ttaccttttt cggtttattg ctgaacattc cgctaaacta tattttcatt
     5041 ttcggcaaat ttggcttgcc tgaaatggga gcggtaggct gtggtgtagc aaccgcaatt
     5101 gtgaactgga ttatgttttt tatgttgttg cattattgct acaccaattc tgcccaaaaa
     5161 gatattcgtt tgtttgagaa atggattgat gctccaagcg gtcaaatttt gctaaaactt
     5221 tgcaaattag ggctgccgat tgcctttgcg atttttaccg aagtgatgct gttttcgacc
     5281 tcatcgctgt ttctgtcacc acttggttca caggtggtgg ctagccacca agctgcattg
     5341 caaaccagtt cgctattttt tatgattccg atgtcgtttg gcattgcaac caccattatg
     5401 atcggacaaa cacttgggca gaaaaatgtg gagggggcga aaatcttaag ttaccacgca
     5461 ctgattaccg caaccgcttt agctattatt gccgccatca ttattatttc gttgaaaaat
     5521 tttatccctt ttgcgtttac caacaacccg atttcgattg cgattaccgc tcatttattg
     5581 atttttgcgg cggtttatca aataccggat gccattcaag cggtagcaaa cggcattctg
     5641 cgtggttata aacataccca accgatttta tacgttactc tgttttgtta ttggggggtg
     5701 agtatgccgc tgggctacat tttggcaaga accgattgga ttgtacaacc aatggctgct
     5761 caaggttttt ggttagtctt ttgtatcggc ttaagtttgg ctggtggctt gttattatgg
     5821 caaatgcgaa aaatacaagc ggtgccaaaa gcacaattaa ttgcaaaatt agaacggatt
     5881 aaataacaga ttctctgcta tggaacatag cagtgctttt tacttttaga agataacttt
     5941 gctgatgaaa aacctaaatc ctatccaact acctttgaat aaatccgttt taatcgaagc
     6001 atcggcaggt acagggaaaa cctttaccat tgccaacctg tatttgcgtt tattgctcgg
     6061 cattggttgc aacccgttaa cggtggaaca aattttggtg gtgacattta ccaaagcagc
     6121 aaccgaagag ttgaaaaacc gtatccgtaa aaatattcag caatgtgccg actttttaaa
     6181 agatcaagct gatggtttgg aagtggaaag tacaaaatcc tatcgaaaca accttgattt
     6241 tttggcacag atttatccgc tcattccgaa tattcacgaa gcattgttac gtttaagtat
     6301 tgccgaacgg gaaattgata ccgccagcgt gtttaccatt cacggctttt gtcaaaaaat
     6361 gctggttcag tttgcgtttg agtcgggcgt gcggtttgac ttggatttac agccaaacca
     6421 aagtgatcta cttaaaaaat taagtgaaga agtctggcga gagcaattct atccgcaaga
     6481 tttagccatc acttatgcgg ttgccgaaca acttggtacg ccggaatatg ccctcaatgc
     6541 ggtaaggcgt tatttatcta ctgaattacc tgaaccaaat gcctctttaa atcaagatat
     6601 tgctgagcat ttggctcaat atcagcagtt tattaatgag gtgaaatcct attggaaaac
     6661 gcattcagat gaactggttg aaactatccg ccacgattta aagcataaaa ttacgctgca
     6721 cggaggttgg tatcgagcga ccacttttga agccggtgtg gaagtgatga accagtgggc
     6781 taattcgcaa cataaccatt tcccggcagg gctttattta ttcactacag agaaaattgc
     6841 ggctggcacg aaaaagagct gtgagccgat agattcccct catcttgcaa aaaatcaggc
     6901 ttttttgacc gcttacaagg aacgttttga aaacagcttg tcagcaatgt tgcagtatca
     6961 atttttaatt gctctcaaag caaaattggc agagtacaaa caatcgcacc cacaacgcag
     7021 ttttgatgat ttactcacaa tgctaaacca agcgttgaaa aatctacaca cgggcgaagc
     7081 cttggctcag aaaattcggg cgatgtatcc ttttgcgatg atcgatgagt tccaagatac
     7141 cgatttaacc caatatgaaa ttttcagcca aatttttatg gcagagaatg cagagaacgg
     7201 ctttattatg attggcgacc cgaaacagtc gatctataaa ttccgtgggg cggatatttt
     7261 cacgtatttg cgagcagcaa agcaggctga tgaacaattc acattgggca aaaactggcg
     7321 ttcgttacct gaagtggtgc aagcggtcaa taatttgttt tcttttgcaa atgataactc
     7381 tccgtttctt tatgaggata ttggctttca cccagtggag gctgatagcc aaaaaggtca
     7441 gttagttagt gagcaagggc attttgtagg ctacatcacg gaaaacagta aattagatga
     7501 tttggctgaa atgtgtgctt atcaaattca tcaacagctt gaggcgatgg ctcaaggcaa
     7561 attcggagtt gaaaaaaacg gcgaatttca atcctttgct gcaaaagata ttgcgatttt
     7621 agtccgaaaa ggttcacaag ctaagcgaat caaaaaggcg ttggcaaaac gtaatatcaa
     7681 atccgtctat ttagctgaat tagcttctgt atttggttcg gaaattgcaa cagaattgtg
     7741 ttggttattg caagccgcac tgaatccgta tcattacaag gcattattat cggcgttagg
     7801 ctcaaccttg tggggcttaa cggcggcaga gatccaccgc tataaggaaa atgagcaact
     7861 ttgggatctg aaagtcaatc agtttgtgga atacagcaac atttggaaag agcagggcgt
     7921 tctgccgatg ttgcataaaa tctacttaga gcagggcatt atcgaacgtt tgaaaggttt
     7981 ggaaaatgcg gatcgcttga ttacggattt attgcattta accgaaattt tgcaggaaac
     8041 ctcgcaagcg ttagagtctg aagctgaact gttgcggtgg tatgaaaagc aagttaattc
     8101 gcccgatttt aatgacgagc aacaacttcg gttggaaagt gaagaggagc taatcaaaat
     8161 tgtgacgatt cacggctcga aaggcttgca atatccaatt gtttggttac cttttgtttc
     8221 acaaaaaagt gagggagaca cgcagacagc attaagttta tatcgcaatt ctcaaggtgc
     8281 gctggattgg tgtttaggct cagaagaggc aagtttttcg ctacagtatg aggcttatgc
     8341 ggaagattta cgtttgctgt atgtggcatt aacccgcgcg gaatctcagc ttaacttagt
     8401 gttgccgaaa gagatttccg gctggtctcc actccattac ttgttagcag acggggaaat
     8461 acctacagga aaagtgcctg tttcagatta ttttagccaa aaacggattg ctgctaattt
     8521 ggttgaagta gccggggaat tacctttctc actgtgggaa ggagaacaat cttcagacga
     8581 ttaccaagca aaaaccttta gtggcaatat ccgtgtggtt ggtcaaatta ccagctttac
     8641 ttcactttat gcccaacacg agcgttttag tgaagggaaa tcagaaaggg taatggattt
     8701 agcccaagat cgagatgtac atatagaaac cattgaggca ggttattcaa gtgaaactgc
     8761 cgctttctcg ccattccaat tcccacacgg tattaaagtg ggcacggtgt tacatcactt
     8821 ttttgagcat tgccaattta acgaacaaat tgatagagag gctgttgcta aagtatgcga
     8881 gcaattaggg ctaagtgagg aatggattga accaacagca ttatggtttg agcgtattct
     8941 aactacccct ttggcagagg caaatttctg cttaaaagcg attgatgaaa ccaaacgatt
     9001 aaacgagtgg caattctatt tacgcttaaa aaatgataaa gccttacatc aattaaatgc
     9061 gttattaaag caacatagcc ctttagcaaa aactttacct gaattgcaat taccgcaatt
     9121 agaaggtttt gtgcgaggct ttgtagattg tatcgtgcaa gtggaggaga aattctactt
     9181 aattgattac aaatcgaatt tcttaggcta tctgccacaa aattatgcga aagaacacat
     9241 tcaacgggaa atgggcagac aacgctatga tttgcaatat ctgctttaca ctctcgcctt
     9301 acaccgttat ctaactgccc gtttaggtga aaaatacgat tatgaacgag acttcggcgg
     9361 agtggcttac ttgttcttaa gggcaatgaa cggcgaaaat gataacggcg tttattttga
     9421 caagccgact aagcagttga ttgaagaaat ggatcggttg tttgggtaaa tatgtgtagg
     9481 ggcgaaaatt tttcgcccct ttatgggtaa ttaactcgct tgctcatacc aaatcttatt
     9541 gatataaagc aacactttac caagcggagt ttctacccta atttcatcat caacctgttt
     9601 gccgattaag gctcgggcga caggggagtc aatcgaaatc cagttttttg ctgggtcgaa
     9661 ctcatcgcaa ccaacaatac ggtactgttt tgcctcgccc tcttcatttt ctaattccac
     9721 ccaagcgccg aaaaagactt tgccttcttg tttagggtga taatcaacaa tttgtagcac
     9781 ctctagccgc ttagataaaa aacgcacacg gcggtcgatt tctctcaaac ggcgtttgcc
     9841 gtaaatatat tcggcatttt cgcttcgatc acccaatgcg gcagcatcag acaccgcttg
     9901 agtcactttc gggcgttctt cccgccatag aaattttaat tcctgatcta aggcttgcca
     9961 gcctgaacgg gtaatgtaat ttgatttagc catagttatt taattgttta tggagcaaat
    10021 agtgatttgc ccctacgaag tttctatttt gaaagcaata aattcgctac tgttcttatt
    10081 cccagtccgg ttgctcctgc cgcccataaa tcgctcgccg ttttgcggaa tgtggcagag
    10141 gcgtcaatat gtagccagtt ttgctggtag ttttctacaa agtaagataa aaatgcggtg
    10201 gcggtacttg ccccagcccc caccggcaca gagccgatat tggcgatgtt tgcaaaggaa
    10261 gaagcaattt gcccacggtg aaattcttca aacggtaaac gccagaacgg ttcattttcc
    10321 gttttggcag acttaaatag tgcttcggtt aggttgtcgt ccattgaaag caccgagtgg
    10381 tagtcattgc cgactgcgac ttttgctgct cctgtgaggg ttgcagcatc aataataaat
    10441 tgtggatttt gcttgcacgc atcaattaaa ccatcggcaa gcactaaacg cccttcagca
    10501 tcggtgttta aaacttcaac agttacgcca ttgcggtaag tgataatatc gcctaatttg
    10561 aacgcattgt ggctgaccat attttccgca cagcagaggt agagtttcac tcgtttattc
    10621 aagcctcgag caatggcaaa agcaagtgag ccggttaaaa gtgccgctcc gcccatatcg
    10681 gttcgcattg tgctcatact atcgcttggt tttagactat aaccgccggt gtcaaaggta
    10741 atgcctttgc cgaccaagca agccagtacc tgtgcgtttt catcgttggt tgggttgaag
    10801 tctaatacta agaatgcagg cggattggca gagccttttc caactgtcca aatgccgtga
    10861 tagccttgtt cttgtaatgc ttcgccacga atgatctggt aagaaaccgt attcggtttt
    10921 gccatttttt ggataaactc gaccgcttgt tcggctaatt tttcaggggt taatttatct
    10981 gatggcttat taattaattc acgcacgaaa gtggcacatt ttacacggtt atcaaattcg
    11041 gcttgctgtt cgtctaagtc tgggtattgt accgagcctt gattttttac cgaatgaaat
    11101 ccttgatgaa acgcccagca ggattttaaa tcccaactat cgccggtcag ctccacggtt
    11161 gaaatacctt gatttttaat tttgcgggcg gctttttgaa tagtggctaa atcgttgttc
    11221 ggattatgta cggtaaaccc cgcatcattt gcggaaagaa tagcattttt accccaaatt
    11281 tcaggggcgt tttgagtaga aagtgaaatt ttcattgctg tcattatcgg tttccttaga
    11341 aaatggattt tgctttatcc taacaaactt ttgcaaagtt ttatacaaaa atgaccgctt
    11401 gcagagcata gccttgacaa gcggtcattg tttcgcgttt ttacaacctg attaaggacg
    11461 gattatttgc cgtcccaagc tttaattgca ttgtggcgga ttttaacacg gctttcagca
    11521 ttgcctttgt agtaatcttt atctaaaccg ccttcccagt cgccatagtt cgggttcggt
    11581 aacataatga attttttacc gaattgttgg ctgttttcgg ctacgaatgc acggcgttcc
    11641 gcgtttgatt tacggtaagt cgcatcgccg aaatcgttta agttgtcgcc aatatagagc
    11701 acgatttcat agccttgttt ttcgatttct tcaaagcgag gggttttgtt cgatttgtct
    11761 tttttcaaca agagtgtttg ttcgctcaca ccactaaagc ctaatttgtt catatcatca
    11821 atagtaccgg ctttttcact gctgtcttta cggtttgaaa catagaacat agttcctttg
    11881 tggctattaa cgtagttgtt aaattccact gcaccggcaa tcgctccggt ttggcgggca
    11941 tttacccaac gagtccagct ttcaccatca aacggcttgt ggtttttaac tttccagccg
    12001 gcataaaggc tgttgtccac catagtttca tctaaatcta ctaccacggc ttttttcttg
    12061 ccttttttca ctttggcttg gtcgaatgcc actttcgctg cattgaatgc ttgatgggca
    12121 agagcttggt attcgccgga ttgttgcatc cagtttatcc ctaatgtagc ttgctcttgc
    12181 aacaccattt gatgatgctc atcgctgttt ttatgcgtgt gcgaacaagc agttaataca
    12241 aataaagctg tgaggctcat agcagaaagt ttgatgtttt tcatacgtat atccttagtt
    12301 ttattgttga taaacagagc gattatacct aaaaagagtt gcttatggct aatagtttat
    12361 tgctcctatt cacttttaaa gcaaactaag gtagcctagt aaccttttta taacaattac
    12421 acagaggcta tatgcaaaca ttattaaaat ttacacaatt tatcagcaaa accttcgcca
    12481 tttgggtggt gttttttgct tttatcgcag cacaatttcc ggaaaccttt aagcaattcc
    12541 tgccttggat tccttatctg ttagggattg tgatgttggg aatggggtta accttaactt
    12601 tcaaagattt tgccgaggta acgaaaaatc cgaaatcagt gattatcggc gtgatcgctc
    12661 aattcgtggt aatgccgagt gtagcttatg gattggcaaa agcatttaac ttacccgcag
    12721 atttagccat tggtgtgatt ttagttggtt gttgcccggg cggtacttct tcaaacgtga
    12781 tgacctattt ggctcgtggc aacacagcgt tatcggtagc ttgtaccact atttcaactt
    12841 tacttgcccc agtgcttacg ccggcaattt tctatttatt tgccagccaa tggttagaaa
    12901 ttaatgcaac ggcaatgttt atttcggtgt tgcaaatggt gctattgcca atttttgtgg
    12961 gcgtggtgat tcgtactatt ttcaaacaaa aagtagagca atttagccaa acaatgccat
    13021 taatttcagt gattgcaatc gtattaattg tcacggcggt ggtgtcagtt agccgagatc
    13081 gtattattga atccggttta ttaatttttg cggtagtagc attacacaac ggtttaggtt
    13141 atttaatcgg ttatttggcg agccgtttat taaaattacc gattgcagac agcaaagcgg
    13201 tggcgattga agtggggatg caaaactcag gattgggggc agcacttgcc gcattacact
    13261 ttaaagccaa ccctatcatt gcggtgccaa gtgcggtatt tagcttctgg cacaatattt
    13321 caggcccgat tttggcgatg attttcgcta aaatgaaaaa cgataacgaa aaataaaatt
    13381 cgttttaata cagacgtttt aatgttttaa taaagaatag acaaacggtt aaatttttct
    13441 aattttttgc aaaatgttca gaaaatttaa ccgcttgttg tttagaattt agaacattct
    13501 tggtccacgt gcagtgctga ttttttcatc atccgctctt tgggtaacaa tcacttgatc
    13561 accctcattt aagcctgcta atacttcggt attttgcgta tccgaaatgc caatttggat
    13621 ttttctttca accgactgct cattttccag caccaacaca taattctctt taccacgttt
    13681 tttgattacg ctggtgggta caactaaaac ctgttcccgt ttatcaatag taatttgggc
    13741 ttgagtagtc attccgatgc gtaaactgtt atcggcatta tcaacggaaa cattagcgta
    13801 gtaataaacc gcttcggtat tacccgattg ttcggtgtag ttattatcgg tcagcgtggt
    13861 gagtgccgga tcaactgaat caatggtagc actatattct cgatttggct cagcaagggt
    13921 ggaaaactta actttttgcc cgactttaac ctgtgcaata tcgccctccg aaatttcaag
    13981 tttaatcagc atcttagata aatctgctac ctgtacaata gttggcgaag tttgattgga
    14041 attgaccgtt tgcccgacag aaaccggtac agacacaatc acgccgtcca ttggcgagat
    14101 aatttgcgta taagttaagt tggttttagc atcgtttacc gaaatttcag ccgattttaa
    14161 ttgtgcttta atgttatcca ccgtggcttt ggctgaagct aaggtatttt tagccgtttc
    14221 aagatcgttt aaagaggcac tatttgcccg atagagttta tttaagcggt tgtagttcga
    14281 ttgagctact tcaagtgcaa cctgtgcaga ggtgagctgt gctttataag aagaaagccg
    14341 ggcttgagcg gtgcttaagg tgttgctctg gttgctggaa tcaatatctg caattaaatc
    14401 tccttgcttc accgattgcc cgagctcgac atagagtttt tggattttgc ccgaaacttg
    14461 agcccccact tcggtgcgtt tattcgctcg aaccgaaccg gttgccagca catttttgtt
    14521 aatttctgcc cgtgtgacag cttgggtaat gtaatggatt tgcggtttat tggtttgttg
    14581 ctgataataa aaatagccgc ctattccgag agcggcaatt agcacaagag tggctaatgt
    14641 tttacgtttc atactgttcc ttgatgatat acaagcggtc aaatttagac aaaaatttgc
    14701 aaaaaagttg ctctcaacta aacaatgcca aatgtggctc gaagatagct tgccaccgct
    14761 tcatctttgt taaagccaat cacttcatta ttcggtaata cggcttttaa acgtggatcg
    14821 gcattaccca ttaaacaacc tttgccggct aaacttagca tttccacatc attcataccg
    14881 tcaccaaaag cgatacaatc ggctaaggtg tagccccgta atttgaccaa ttcggcgaga
    14941 gcattggctt tacacactcc ttttgccatc acttcaaggc aaagtagggc agagtaggtc
    15001 atttgcacac ggtcgccata ggtatcccga atataatgtt caatcggtac taaagcttca
    15061 gcagttttgc cgataaaaaa cactttctcg gtatttcgac cgtgatgatg agcaaaattt
    15121 actacttgat agctaaatcc tgaatcttga tggaattttt ttaactctgc aatctcttta
    15181 ttgataaacc attcatcgcc ttgatagctg tttaagcaca cattttggtc gtcaaattca
    15241 atgttcatta attcaaaggc aagatcttcc ggtaaataat ggttgagaat ttttttaccc
    15301 tctaaattgt tggctcttgc cccgtttgaa gtgactaaca ttgcattttt aacgtttact
    15361 ttcccaataa tctgagacac atctggatga ttgcgaccgg tggcgaaaaa aatatcaaca
    15421 cctttttttg atagttgttc taatgtatca atagtgaaat caccaatttt atgattggca
    15481 tttaatagtg tgccatcaag atcggaaata attgcacgaa at
//
LOCUS       DANLUT010000044        15476 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLUT010000044 DANLUT010000000
VERSION     DANLUT010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15476
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            32..1138
                     /gene="mltA"
                     /locus_tag="PXB38_001089"
     CDS             32..1138
                     /gene="mltA"
                     /locus_tag="PXB38_001089"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL5353419.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            1209..1613
                     /locus_tag="PXB38_001090"
     CDS             1209..1613
                     /locus_tag="PXB38_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353420.1"
                     /translation="MLANNLQNITASTEPKYKISEIDVRILIRQLNNIEQCIYPELAK
                     PGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTLSTEYFHLLHSRLNHQ
                     KANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(1647..3164)
                     /gene="purF"
                     /locus_tag="PXB38_001091"
     CDS             complement(1647..3164)
                     /gene="purF"
                     /locus_tag="PXB38_001091"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5353421.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(3179..3682)
                     /locus_tag="PXB38_001092"
     CDS             complement(3179..3682)
                     /locus_tag="PXB38_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL5353422.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(3828..4289)
                     /gene="rnhA"
                     /locus_tag="PXB38_001093"
     CDS             complement(3828..4289)
                     /gene="rnhA"
                     /locus_tag="PXB38_001093"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL5353423.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(4382..5713)
                     /gene="argG"
                     /locus_tag="PXB38_001094"
     CDS             complement(4382..5713)
                     /gene="argG"
                     /locus_tag="PXB38_001094"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL5353424.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            5897..6937
                     /locus_tag="PXB38_001095"
     CDS             5897..6937
                     /locus_tag="PXB38_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5353425.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(7002..7760)
                     /locus_tag="PXB38_001096"
     CDS             complement(7002..7760)
                     /locus_tag="PXB38_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5353426.1"
                     /translation="MPTLSVAMIVKNEAQDLRTCLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            7887..8201
                     /gene="yhbY"
                     /locus_tag="PXB38_001097"
     CDS             7887..8201
                     /gene="yhbY"
                     /locus_tag="PXB38_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL5353427.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            8262..8984
                     /locus_tag="PXB38_001098"
     CDS             8262..8984
                     /locus_tag="PXB38_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL5353428.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLAWVVHKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            9053..9214
                     /locus_tag="PXB38_001099"
     CDS             9053..9214
                     /locus_tag="PXB38_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353429.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            9222..9584
                     /locus_tag="PXB38_001100"
     CDS             9222..9584
                     /locus_tag="PXB38_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353430.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESEKKVILLGTKFNNKRKTFNFANTKTQKKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            9597..10514
                     /gene="nagK"
                     /locus_tag="PXB38_001101"
     CDS             9597..10514
                     /gene="nagK"
                     /locus_tag="PXB38_001101"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL5353431.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYACGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVEFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(10585..12531)
                     /locus_tag="PXB38_001102"
     CDS             complement(10585..12531)
                     /locus_tag="PXB38_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL5353432.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANGTFNQLRKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKEA
                     LAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(12563..13351)
                     /locus_tag="PXB38_001103"
     CDS             complement(12563..13351)
                     /locus_tag="PXB38_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL5353433.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            13476..13706
                     /gene="xseB"
                     /locus_tag="PXB38_001104"
     CDS             13476..13706
                     /gene="xseB"
                     /locus_tag="PXB38_001104"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL5353434.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEDALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            13712..14605
                     /gene="ispA"
                     /locus_tag="PXB38_001105"
     CDS             13712..14605
                     /gene="ispA"
                     /locus_tag="PXB38_001105"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL5353435.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVAQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEHSQNLAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGDTDKIGKTVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(14639..15439)
                     /locus_tag="PXB38_001106"
     CDS             complement(14639..15439)
                     /locus_tag="PXB38_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL5353436.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRAGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVVAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIITTQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAKPHV"
BASE COUNT         4724 a         3277 c         2982 g         4493 t
ORIGIN      
        1 tcacatttta ttaacgatat aaggatattc gatgaattgg aaagcatata aaaaagctat
       61 tgcggcagct agcgtggtag cgattgcaac ggtattagtg gcgtgttcgt cttcaggcca
      121 aaaaggcaaa acaacctctt atgatgcgga aaaagctaaa tttggagcaa aatataatgg
      181 tcgtcacttt atgccttatg gcacacattt tcaagctgga cgtttaggat taaatgctgc
      241 tcctgttaat caactagact ttttacagca gctttctaat gtcagagcct atagtagctt
      301 ggcagattct tatgctatcg cttacggaaa aatcagtcgt tggatctcat cgggcggtaa
      361 tattaatgat ttagcaaaat atggtattag tactcgttta atgcgtggcg aagatggcta
      421 ccagaatgtg ttaatgacag ggtattactc gccggttatc aaagcccgta gaacgcctca
      481 ggggcaatac caacacccga tttatgcgat gccgtctagc aaacgttttt cacgggcgga
      541 aatttacgca ggagcattgc aaggtcaggg cttagaactg gcttatagta attcaatgct
      601 cgataacttc ttattaggtg ttcaaggtag cggttacgtt gactttggtg atggtcgctt
      661 aaactatttt gcttatgcag ggcaaaatgg ctttaaatat gccagcgttg ggcgtttatt
      721 agtagaagat ggcgaaattc cgaaagagaa aatgtcagtg caggctatcc gtgaatgggg
      781 gcaacgtaac cctagccgtg ttcaaggttt gttggagcgt aatccatcgt atgttttctt
      841 taaaaacgat cctaccggtc aggtaaaagg ctctgccggt gtgccgttag taccacttgc
      901 atctgttgca tcagatcgta gcattgtgcc atcaggtagc gtgttgttgg tcgaaatgcc
      961 gttgattgat agcaaaggaa attggaccgg caaacacgaa atgcgtttaa tggtggctct
     1021 tgatgttggc ggtgcagtga aaggccatca cttcgattta tatcaaggga ttggcgataa
     1081 agcaggccat atcgcaggtt taatgaaaca ttacggccgt gtttgggtat taaattaata
     1141 cagggtaact atgttaaaaa aactatctgc catattctta cttctaccga gtacttctac
     1201 cgagcgccgt gcttgcaaat aatttgcaaa atataaccgc ttcaactgag cctaaatata
     1261 aaatctcaga aatagatgtc agaattttga tacgccagct caataatatt gagcaatgta
     1321 tctatcctga gttagctaaa cccggttacc agcaaatcta cgcaaattgg aatctggctg
     1381 aaaatttaac gatgcaatat tttgaatatc agcttctaaa agagttgctc ggagaggaaa
     1441 atcagaaact gatgcaaaat gatacgcttt ctaccgagta tttccattta ctgcattctc
     1501 gtttaaatca ccaaaaagca aatgtagatc ccgaaaaatg cgatacattt aaacctagat
     1561 ataaagagat ttataaaagt atggaaaatg cactcactaa gaaaaatcaa tagtaaaaaa
     1621 ctcgcagttt tcactgcgag tttcttttat ctttcgttat gaatttctaa attggtggct
     1681 tgttttgccg cctctgcttt tgctttatcg tttcgagatc ttgctatact gtctaaatag
     1741 catttatcta catcacctgt aatatattct cctgtaaata cagagtcatc aaagcgatga
     1801 atagtcggat tttccagttg aatagactta taaagtgctt caaggtcttg gaaaatcaat
     1861 ttatccaccc ctatcatctg tgcaacctct tccactgagc gatcataagc cactaattct
     1921 tcacaagtcg gcatatcaat gccatacaca ttcgggtagc gaatttccgg tgcggcagag
     1981 gcaaaataaa cccgttttgc accagctgct cgtgccattt ccacgatttg ttcagacgtt
     2041 gtacctcgta caatagaatc atcaaccagt aacacgcttt tgcctttaaa ttcagaggca
     2101 atcgcattta atttacggcg aaccgagctt ttacgctgtg cttgccccgg cataataaaa
     2161 gttcgagcta catagcggtt tttaacaaac ccttgacgat agggtttata caacatatta
     2221 gcaatacgta ccgcaatatc atttgaggtt tcaggaatcg ggatcaccac atcaatatca
     2281 tcgataattc gtccccattc acgtttaatt ttctcaccta ataattcgcc catatgcact
     2341 cgtgcagaat atacagaaac gccatcaatg acggaatcag gacgggcaaa ataaacatat
     2401 tcaaaaatac aaggattcag ttttggatta tcggcacaaa tttgcgaatg taattgccca
     2461 tcaaaggtaa cataaatcgc ttcacccggc agcacatctc gcacaaattc aaaccccact
     2521 acatcaagag ccacactttc cgaagcaaac atatattcgg ttttaccctc gatttcacgt
     2581 ttacccagca ctaacgggcg aataccgaat gggtcacgga aagcaaccat accgtgtccg
     2641 ataatcatcg caatgcaagc ataagcacca cgaatgctat cattggtttt acgaaccgtt
     2701 tcaaagatat tgtctgggct taaatgctga gtggaataga gatctaaaaa gtaagcaaaa
     2761 atattaagaa gggattcaga atcagaatta gtgttcacat ggcggcgggc ttcgttgtat
     2821 aagcgagctt taagttccgc attattagtt aaattaccgt tgtgaactaa ggtaataccg
     2881 aaaggtgaat tgacataaaa tggctgggct tcagacacac ttgagctacc tgctgttggg
     2941 tagcgaacgt gaccaattcc aacattgcct tgtaatctca ccatatgctc ttgctggaaa
     3001 acatcgctga ctaagccgtt agctttgcgt aagcggaaac gattttcatc gtctatggtg
     3061 acgatacctg cggcatcttg tcctcggtgt tgaagtaatg ttaaaccatc ataaatcgcc
     3121 tgattcaccg gcgaattccc aataataccg acaatgccgc acatatagaa aaacctcttt
     3181 atttagtcgt gtttaaaaaa ctggaatttg cttgtaactg ttcaaagaac cacttcacaa
     3241 taaagtcaaa atgcggaatt aatagcgatg atttccataa ttccgtttgg cttgcttggg
     3301 taaaggtatc taagaaaaat aaaatagccg acacaattaa aataccacgc aatgccccaa
     3361 aagcaccgcc taaaatacgg tcggtgatag acattccgct caaatcaatc actttgccta
     3421 ataaaccgtt gatcacacca caaacaatta aagtcaaaat gaacagaatc gccgctgcaa
     3481 taccattgcg taaaaattct gaattttgca aataaaccga attaatttgt gtgagataac
     3541 cgcttaaata aggataaaac gagcttgcca caaaaaaggc gattacccaa ccaagtagcg
     3601 ataatgcttc attggtaaaa cctcgccata aactgataag cactgaaaaa gcaatgattc
     3661 cgataacaat taaatcaacc ataacacacc ttaaagcgta aagctctcct attctacaaa
     3721 aaaagaaaac gtttgcgtag cactatttcg ctaaaaataa gtgctttatg caaatacaag
     3781 cggttaaatt cggtaaaaaa tttacacaat ccgaccgctt gtaaaaccta gtctgcaata
     3841 taaccaacat cgtccaacgt tggattattt gctccttgtt tagccagctc atcgcaaatc
     3901 tcattttcac gatgtcctga atgccctttc acccaactcc attcaatttg gtggcgttga
     3961 atttcttggt ctaaagcaac ccataaatct ttatttttaa ctggcttttt atcgctggtt
     4021 ttccagtcat ttttcttcca gttaaaaatc catttttgga tcccgttttt catatattgg
     4081 ctgtcactat tgagttgcac cttacaaggc tcttttagca ttgctaaagc ctcaatcacc
     4141 gcccgcaatt ccattcggtt attggtggtt tgaaaatagc ctttgctcac ggttttttcg
     4201 tacccgttat aacgcagcaa aataccaatc ccccctttgc cggggttgcc taaacaagaa
     4261 ccgtctgtaa aaatttcaac taatttcatc atcacgcttt gaaaataaaa gccccaaagc
     4321 attaactttg gggcagcttt taggctaaat tctaaaagtt atcagaatgg agatcaactg
     4381 attatttttt tccaagttgt ggaatcacgc tattattagc cgccaataaa cctgcatcgg
     4441 tataaactgc taatttacca cgggtatcga caatatctaa gttacgcatt gttaattgac
     4501 cgatacgatc tgccggcgta aacggtgcat cttctacttt ttccatactt aaacgttctg
     4561 cttcgtaggt taagtttggc gattcagtgt taagaatagt gaaatcgtta ccacggcgta
     4621 actcaagcgt gaccgtaccg gtaatcgctt ttgccaccca acgttgagcc gtttcacgca
     4681 acattaaagc ttgcgggtca aaccagcggc cttgatacaa taaacgccct aaacgtaatc
     4741 cgttaatgcg atattgctca atcgtatctt cgttgtgaat accggtaact aaacgctcgt
     4801 aagcgatgtg taataatgcc attcccggtg cttcataaat accacgagat ttcgcttcga
     4861 taatacggtt ttcgatttgg tctgacattc ccaaaccatg tctgccacca atgcggttag
     4921 cctccataat taattcaacg gcatcatcaa tacgtttacc gtttaacgcc accggcacac
     4981 cttcttcaaa ggtaacagaa acagtttccg ctttaatttc aactgattcg tcccagaatg
     5041 ccacgcccat aatcggtttt acgatcttca taccggtgct taattcttct aaatctttcg
     5101 cttcgtgggt tgcacctaac atattcgagt ctgtagagta ggctttttcc accgacattt
     5161 tatagtcaaa accgttttcg attaagaatt tagacatttc caagcgaccg cctaattcat
     5221 caatgaatag ttggtctaac cacggcttat aaatttttaa ttttggattg gttaataaac
     5281 cgtaacgata gaaacgctca atatcgttac ctttaaaggt tgaaccatcg ccccagatat
     5341 tcacatcatc ttctttcatt gccgcaacca acattgtgcc ggttaccgca cgaccaagtg
     5401 gcgtggtgtt gaaatacgga ataccgccgg ttgaaatatg gaaagcaccg cattgaattg
     5461 cggcaatgcc ttcgtgagct aactgttggc gacagtcgat taatcgtgca ttttcagccc
     5521 catattccat cgcttttttc ggaattgcgt tgtaatcatc ttcatccggc tgacctaaat
     5581 ttgcggtgta cgcataaggc actgcccctt ttttacgcat ccataacagt gctgctgagg
     5641 tatctaaacc gcctgaaaag gcgataccca ctttctgccc taaaggtaaa gcttctaaaa
     5701 ttgttgctga catacgaatt cctataaatt ttgaaagtaa aaatattcaa acgcaaacgc
     5761 ttacgttcaa gcaaaatatt ctagctgaaa agtagtaaaa attcatctaa aatttagccc
     5821 gatgatttgc aaattttttg tgaaatttga ccgcttataa tttactgaaa acctaaaagc
     5881 aatagagaaa atcagaatga aaaaactact cgtaatccgt aatgataaaa ttggggactt
     5941 tatggtctgc tttccggcat ttgctatgtt gaagcaatca atgccgaatg tggaaattac
     6001 cgctcttgtg ccaagttata ctgctccact tgccgagctt tgcccttcta ttgataagat
     6061 tattattgat acggcgaata aaaaagataa aaatgaattt aaccgtattt tacaagcggt
     6121 taaaaatgag caatttgatg cggttatttg ttttgtttca gactggcata atgccaaact
     6181 cacctggcaa agtgggatta aataccgcct cgctccagca actaaattat tccaattttt
     6241 atataaccac cgtttaaccc aacgccgttc tcagtcagca aaagcggaat ccgaatataa
     6301 tttggattta gcccgtgctt ttttaagcaa acacaatata ccgattgttg aacctcacac
     6361 gccatactta agtgttgaac agcaaaccgt ccaggcacaa aaagcaaaat tatgcgaaca
     6421 actcaatatt accaccgtta aaaagtgggt atttgtgcat agttcaaccg gtggttcggc
     6481 aaataattta tctatagaac agtatgcaga gttaattcaa ggtattttgg cagaatttga
     6541 ttgctatgtg gtactcaccg cagggaaagg cgaaagcgaa aaagctcagc agttagctca
     6601 acaaatcaat cacaacaacg tggtggttta tgataaaaat gaggggttac aagattttac
     6661 acattcgctt gcgtgtgcag atttgtttat tgccggctca accggtccgt tacatattag
     6721 tggggcgtta aatattccaa ctattggctt ctacccgagc cgactttctg ccattccacg
     6781 ccgttggaaa ccgattaatg atgcgaataa acacattgca ttttgcccac cgtctgataa
     6841 agcctcacaa atgaatttaa ctttaatttc tatttctgag gcattaaaaa cgatagtacc
     6901 gtttattcgg agaatgtgga atactccctc tctctgataa aattgctaaa cgcaatttta
     6961 tctatctctc tcccactaga gggagagagt actgaaaagc atcatttccg agtacgattc
     7021 cacaaatccg catattttac gaaagtagaa tgtgccgaaa gaactgccaa taaaaatcct
     7081 tgcttgccat ctaaaaaacc ggcttttaat agatacattt tcacaaaaca gccgatggcg
     7141 tgagtcacgc catcaaataa gctggctgtt ttgcctgcat ttgcccgttg gattgcccac
     7201 gctttagcgt aacttgccga ttttaccaaa tagtggtgaa tatctttata ggtgaaatgc
     7261 agcaaatcgc cttgtagttt ctggattttt gcctcttttg ggtaatgtac tttttcgtga
     7321 accaattcat caccatattt ggcaaattcc gtgcgataca atctcaccac acaatccgga
     7381 taccaacccg agtggcgaat ttgtttgcca aatacttcac ttaagcggct gattttgtaa
     7441 acggtatttt tttcatcatt tttgaccgct tgtaaaatag attgcttcag ttcggctgtc
     7501 actcgctcat ctgcatcaag ccaaagtaca taatcactgg tcacatattg ttgagctaac
     7561 tgacgctgtt taccaaagcc ttgccaatcg gtgttagtgt agaaccttgc gttgtattca
     7621 gcagcaattt gtggtgtttc atcagtactg ccactatcta aaatcacaat ttcatctacc
     7681 caatctttta ctgtgtcaag gcaagtccgt aaatcttgag cttcattttt gacaatcatc
     7741 gcaacactta atgtcggcat agtttatcct tctctctttt tgtcgtgtgt ttttctgcta
     7801 ttcgttgcat tttactttaa aaatagtggt ttttgtgcta ttttctacgc caaattttat
     7861 caacaaaaca aattaacgga aaaagaatgt caattacatt aacaaccaaa caaaaacaat
     7921 tcctaaaagg cttggctcat catttaagcc cagtggtgat gctggggggt aacggcttaa
     7981 cagaaggcgt gttagctgaa atcgataacg ccttagacca ccacgaactg attaaagtta
     8041 aagttgccgg ggctgatcgt gaaaccaaac aattaattat tgatgccatt ctgcgtgaaa
     8101 ctaaagcggc tgaagtacaa accattgggc acattttagt gctttaccgc caaagcgaag
     8161 agaaaaaaat cagcttgcca aaagcaacta aagcgatcta attgcaaaaa tatgtttaaa
     8221 ttcaaccgct tgtattcaag cggtttttta taggactttc tatgtttaaa aaattctctc
     8281 tttataccct tgcaatgttg ctcattcctg tggtgacttg gctggcaaat tggcactggt
     8341 ctctggcaat tcaatacgct gaatttgatt tcgactactt tttatattta atcaccgaaa
     8401 ccggctccgt accttatgcc atcatcacct gtgtggtttt cgccttatta ctggcgtggg
     8461 tggttcacaa acgctactct ttaatttttg tgattaccgt gtgtgtcgct tcaatggtag
     8521 ccactcaagc aatcaaaaca gcgatgaaat caacctttca agagcctcgt ccatttgtca
     8581 ctgctctttt ccaagataaa acagacgatt tttatcaatt aacacgcgag caacgtgggc
     8641 ttgccgtaat ggaaaaaatc ggtgcaaatc aaaattttgt taccgctcac caagccaaag
     8701 aagtgggcta ttctttccca tcaggccaca ctatttttgc ggtttcttgg ctattattgg
     8761 tggtaggttt ctgccgtaat atgcgaggac aagcggtcgt tttggctcat ttttttgcaa
     8821 tcagttgggc ggcgttaatg ctgattagcc gcttgcgttt aggtatgcac tacccgattg
     8881 atttattcac cagtagttta attgcgtttc taatcaattt agccttattt gtgtggtttg
     8941 tgccttggtt ggaaagtaaa aaatggtttg ctaaaaagcc ttaattggca atttagccaa
     9001 atcaatatac aatacaaatt attgaataag tacctaaaat aaggagctta gaatggaaat
     9061 gtcgatagaa aaaatagctg aactattaag cgataaagaa aaagatgact atccgtttag
     9121 tattgaggaa agacaatttg ccgcccaggc tagtgctgat acttgggagg caatcttaaa
     9181 taacactatt caaccttttg acttcaaaaa ataggcttgc tatgtatcaa gtttttattg
     9241 cagaaccaaa agacccaaac ttagagaaag gcttattgaa acacttcatt aagtcttatc
     9301 ttactcaaga agaactcgat ttcctgcata aaattctcac taatttaccc aacatcagac
     9361 ctttttgggg cgataccggt tacaaatata tcgtcattga taatgtttac ttcttgtatg
     9421 aagtttccga aagtgaaaag aaagtcattc tacttggcac caaatttaat aataaacgga
     9481 aaacttttaa ttttgcgaat acgaaaaccc agaaaaaatc aatgaagaaa tggattaatg
     9541 atttagcaat ttataaaccg cataaaatca atcaatcgca ataagagagc gtaattatgg
     9601 caatttatta tggcttagat gtgggcggca caaaaattga attagccgct tttaatgaaa
     9661 aactagaaaa actacacagc gaacgtgtgc cgacaccgca gacaaattat caagattggc
     9721 tgacggcaat taaaacgctg gttgagactg ccgatacaaa atttgacgaa aaaggcactg
     9781 tcgggctggg cattccgggc tttgtaaacc gtgaaaccgg cattgcggaa attaccaata
     9841 ttcgagtggc tgacggcaaa acgattctga aagatttagc cgaatgttta gggcgtgaag
     9901 tgcgtgccga aaacgatgct aactgctttg ccctgtctga agcgtgggac gaaagtaata
     9961 agccttattc caccgtatta gggttgatta tcggcaccgg ttttggcggt ggttttgtgt
    10021 ttgacggtaa aattcattca ggcagaatcg gaatggcagg cgaagttggg catatgcaac
    10081 ttaactacca cgcacttaaa ttgctcgact gggataaagc cccaatttat gcatgtggtt
    10141 gtggcaacca agcctgttta gacacctata tttcagggcg gggttttgag ttactgttta
    10201 atgatttagt aggagaaaaa atctcggcga aagcgattat cgaacgcttc taccaacaag
    10261 aaaccaaagt ggtggaattt gtcgaaaaat atattgagct aatggcaatc agtatcagca
    10321 atctgattac gattttagat ccggatatga ttgtattcgg tggcggttta tccaactttg
    10381 attatatcta ccaagctcta ccaaaagcat taccaaaaca cttaatgcgt tcagcgaaag
    10441 tgccggtcat caaaaaagca attcacggcg actcaggtgg cactcgtggt gcagcagcat
    10501 tattcttaaa gtaatgaaca aatttgagag agggcaagcg gtcattttta ataaaaatat
    10561 tgcagccctc tcttttaatt tgccttactg cttagtttct tccggtaatt tatataactg
    10621 atttttatat aaataactgc caagcaatgc gtgtgctaac gcctcttttt taaacgattc
    10681 cggctgttct ttaggggtga gtttatagtt agctttatcg tagctaaatc cttctatcgg
    10741 taaatttggt cgcattacca ccacatcatt tccccgcatc atcgcctgtg tcgcatcata
    10801 ttgcataaag gcacggtttg ggtcatcttg cgttaaatca taccctatca tcggatattg
    10861 accacttatt cccgccacag aaagtaatgt tgtcggcata tcgagctgac taactaaacg
    10921 gttatccgtt cttggctgaa tgtgttcgcc taataaaagt gccggaatat ggaagtgttg
    10981 aattggcact aaatgctcgc caacggctct tgaatcgtga tctgcaatca ctaaaaacac
    11041 cgtatcttgc cagtactctg attttttcgc taactcaaag aaatgcccga tagcataatc
    11101 ggcatatttt gccgcattat ggcgagtctg cttcggttgt tcatagagtt caattttgcc
    11161 gtccggaaat tcaaacggat cgtggttact ggaactgaat accaaactaa aaaacggttt
    11221 acctgatttg cgcagttgat taaaagttcc atttgcctta tcaaacagat cttcatcact
    11281 cacgccccaa gttgcggtaa atttagggtt tttataatct ttttcatcga taatttgctg
    11341 gaaaccatta ccgtagaaaa agctcgccat attatcaaaa tgcttctccc caccataaat
    11401 aaaggaagta tggtatcctt gacgttttaa taattcggca atactaaaaa agttagtttg
    11461 gcttttcgtc agttttacca cagatcttgc cggtgttggt gtaaaaccag ccgttaccgc
    11521 ttcaattcct ctcaccgaac gagtacccgt tgcataaaga ttggtaaaat accagccttg
    11581 ttctgaaagt ttatctaaat ttggagtgag atttttccct cctagcgaac cgacaaattg
    11641 agcccctaaa ctttcttcta agataatcac aatgttttta ggctttcctt gataagtcgc
    11701 tttattttgc gtgagggtgg gaatttcatc tgaaatataa tctgaagctg gtcgattacg
    11761 aacctgctta acaatgttga acatttcctc cacagacatt tttccatact gttcggaaga
    11821 tttatcttca tctttcaatt gctgaaccgc ataaagcacg gaataacctg aatttagcac
    11881 cagtgaattg acaagcggat cgcttgaaaa tgccaccatt gccggattaa tccctcgatg
    11941 ggcaaaactg gaacgcccac caacaaaaac tattgcagca accaataaag ccagtagcgg
    12001 acgcattttc cagctcggga aatgcaaatt tttggttgcc caacccgata atttccaata
    12061 aatgatgaga gaaatcatcg caatgccaat cccacaaata acagcccata aatgtccgtt
    12121 aatcagcatt gtgaacactt ctctcggatg gaccaaatac tcaatgaaaa gacgatttgg
    12181 gcgaaggtca aaggtttcaa taaaattcgg tgtggcgact tccataaaaa gaataaatac
    12241 actaccgaca gttagccaaa ttcttaaaac agtctgccaa atcgaaccca gtacattttt
    12301 atgaaaacac aacacgctaa ataatgccgg taagccaaat agccaacata gcgaagatat
    12361 atcaatgcga ataccttgta gtattaatgg tatccatcca tcaacagcgg atactcgatc
    12421 agattgccaa acgcctaaca ctaaacggga taaggtgagg ataactaaat taatcccaac
    12481 aaatagtagg attggaaata gcacagttct tgattgactg cgttggtaca ttttgaatct
    12541 ccttttaaaa aatatcggca tattataatt gaataatgac aggatcgcct acttttatca
    12601 caccactgtt ttgtggcaca aggtgaatac cgaacaccgg cttacctttt tcatcgcaat
    12661 gcttttcttt taaggttcta aacggctccg atttggggtc taactcaagc gtgtttaaat
    12721 cccgtgtaat caaaatgcaa cgagtacata atgccgcttt ggtaaatagc acttcgccaa
    12781 tttgaacttg ttgccactgc tcttcctcaa atgccacatt gccatcaatc acaatattcg
    12841 ggcgaaaacg agccatttcg agtggaatcg gcgaccattg ttgcacttgc tcaagcgatt
    12901 ttagagacat caaactcacc gggttgctat ctgcaaaact cattgggtga tcggcaaaat
    12961 tcgcaacaat tcgttggctt tgcgagccaa gccaacgtag ttgcacagcc ctaccaaaaa
    13021 tttcactcag ccattgattg accgcttctg ccgccacttt ggcattaaaa tgtgttcccc
    13081 acacttcact actctgctct tccacaaaat cttggtaaag tgcaacgcat ttttgaccgc
    13141 ttgtatgggt aatcattacc cctgtcgcaa tcgggaaagc cgctagacgg tataattccg
    13201 gatctttacg ggcagtaata aatttgccgt taggctcggc tagcataaat tcacggtcaa
    13261 aatttaagcc tttcggttca acaaatgcct gtgaaacttg aatagcttga gttgatttta
    13321 tcgggtaaat attgagctcg gtaacttgca tagaaaatcc tccatttgga aataggataa
    13381 caatacctgc aagcggtcga aaagtaaaag gaatttgcaa atcccttgtg agaacggtaa
    13441 acttgagcaa cttttacagc aataggtcag caacaatggc aaagaaaccc actcaagatt
    13501 ttgaaagcac acttaaagaa ttagaagcaa tcgttaccca tttggaatcc ggtgatttac
    13561 cgcttgaaga tgccctcaac gaatttgaaa ctgcaatcaa attagtgcaa caagggcaag
    13621 aacggttaca aaaagccgag caacgtattc aaatcttatt aaataaaaac gatactgccc
    13681 cacttagcga ttacgaaaga gaataatcac aatgagctat ctattagcaa ccgatctgac
    13741 tcacctgcaa caacggatta accattttct cgctgaaaaa ttaaaaacaa cggatagcgt
    13801 tggttcgcct ttagtagaag caatggctta tgcggtattg ctgggcggta aacgggtgcg
    13861 accgttttta atctatgcca ccggcagaat gcttggtgtg ccgttggaaa aattagatca
    13921 tagtgcggcg gcaatggagg ctattcacgc ttactcgctg gttcacgatg atttaccggc
    13981 aatggacgat gatagattac gccgtggcaa gccaacctgc catattgcct ttgatgaagc
    14041 taccgctatt ttagccggcg atgcgttaca aagttttgcg tttgaactgc tggcaaccga
    14101 tccgcatttg accgaccgag aaaaagtcgc tcaagttaca gaattggcaa ctgcttccgg
    14161 tgcaaaagga atgtgcttag ggcaaagttt ggatttgatt gcggaaaata aagctgtcag
    14221 tttggaagaa cttgaattaa ttcatcgcaa caaaaccggg gcattgatac tgtcatccgt
    14281 gatgatggga ttgaaccttt ccgaacattc gcaaaattta gccataaaac aaccgcttgt
    14341 aaactatgcc aaagcgattg gcttagcctt tcaggtgcaa gatgatattt tagatgtcat
    14401 tggtgatacc gataaaatcg gcaaaacagt gggttcagat gaacacttaa ataaaagcac
    14461 atacccgaaa ttgttgggct tagacggggc aaaacaaaaa gccgaaatgc tttatcaaac
    14521 cgctctccat tcgctggaac agttgccttt cgataccacc gcattaaaag agttagctaa
    14581 ttttattgtt aagcgtgaaa actaagaaaa aacctagccg aagctaggtt tttagtgatt
    14641 aaacgtgagg cttggcttcc ggcaatgtgc cttcaatttc atataccaca tcgccgtctt
    14701 taaagaaaac atagccacca tttttcattt tggtccagtt ttcatttttg gtaagtggct
    14761 gagtggtaat aatcgtcact ttatcagtaa ttttggtata ttgactaaaa tcaatcgaca
    14821 catcatcatc acgcaaggct ttgccaaacg gtgctttacg gcaaacgtaa tgcagattag
    14881 ttgtacaacg ggcaatcatc caatgaccgt tggataaaac aaaattaaat accccgtgtt
    14941 ccgcaattct tgaggtaatt tgcaccacag catcaaaaat ctctttttcg cttggcttag
    15001 ccggatacat ctcttttaat tccgacacaa tacggcaaaa tgccgcttcg gaatcggttg
    15061 taccaatcgg ctggtagtgg cactcctcgc ataccccaac accttccact gtgccgttat
    15121 gggcaaacac ccagttctcg ccccataatt cacgaatgaa tgggtgggta ttttccaaat
    15181 tcacatcgcc acgggtagct ttacgaatgt gtgcaaccac attgagtgat ttaatttgat
    15241 attggctgat cgcttctgcc atcggcgatg atgcccccgg gcgattatca cgaaaaaccc
    15301 gaacgccttt accctcaaaa aaggcaatac cgaatccgtc tgtatgatga tctgtaagcc
    15361 ctgctctacg gcggaaacca tcaaaagaaa atgtaatatc ggttggcgta ttacaattca
    15421 ttccaagtaa ttgacacata attgacttct ttaaaataaa taatttacaa caaaaa
//
LOCUS       DANLUT010000045        15344 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLUT010000045 DANLUT010000000
VERSION     DANLUT010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15344
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            56..1981
                     /locus_tag="PXB38_001107"
     CDS             56..1981
                     /locus_tag="PXB38_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL5353437.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKETG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSEMLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            2055..2420
                     /locus_tag="PXB38_001108"
     CDS             2055..2420
                     /locus_tag="PXB38_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL5353438.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            2422..3108
                     /locus_tag="PXB38_001109"
     CDS             2422..3108
                     /locus_tag="PXB38_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL5353439.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMAIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            3192..4955
                     /gene="msbA"
                     /locus_tag="PXB38_001110"
     CDS             3192..4955
                     /gene="msbA"
                     /locus_tag="PXB38_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL5353440.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADSISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGSISVVKAEGNVEFKNVSFSYEGKDEKALNNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGEILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTVANNIAYAATDKY
                     TREEIIVAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            5044..5676
                     /gene="lolB"
                     /locus_tag="PXB38_001111"
     CDS             5044..5676
                     /gene="lolB"
                     /locus_tag="PXB38_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL5353441.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNAPTEVQQPTVQIPHNDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDSEGNSRSDRDVDALMQEIITVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            5664..6518
                     /gene="ispE"
                     /locus_tag="PXB38_001112"
     CDS             5664..6518
                     /gene="ispE"
                     /locus_tag="PXB38_001112"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL5353442.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTEAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            6544..7494
                     /locus_tag="PXB38_001113"
     CDS             6544..7494
                     /locus_tag="PXB38_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL5353443.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGSAAQNLANPALDEIVVTDTI
                     PLSNEIKALDKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            7573..8583
                     /gene="pyrD"
                     /locus_tag="PXB38_001114"
     CDS             7573..8583
                     /gene="pyrD"
                     /locus_tag="PXB38_001114"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL5353444.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
     gene            8947..11604
                     /gene="aceE"
                     /locus_tag="PXB38_001115"
     CDS             8947..11604
                     /gene="aceE"
                     /locus_tag="PXB38_001115"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL5353445.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
     gene            11808..13712
                     /gene="aceF"
                     /locus_tag="PXB38_001116"
     CDS             11808..13712
                     /gene="aceF"
                     /locus_tag="PXB38_001116"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL5353446.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSAPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRRLA
                     REFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGLLP
                     WPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQNK
                     EAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGIAVDTPN
                     GLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTHFT
                     PIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYINS
                     VLADIRRLVM"
     gene            13912..15336
                     /gene="lpdA"
                     /locus_tag="PXB38_001117"
     CDS             13912..15336
                     /gene="lpdA"
                     /locus_tag="PXB38_001117"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL5353447.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKC"
BASE COUNT         4560 a         2842 c         3508 g         4434 t
ORIGIN      
        1 caagcggttg tttttgcaaa atattttgca aattcgaccg cttgcctgtt tttaaatgac
       61 aaaatacgac gataaaattc agcacgcatt tagcgaaaat gggttgctca gccaaaatat
      121 cagtggattt cgaccacgcc aagcacagct tgaaatggct caagtggtcg caaaagcagt
      181 aaaatttgcg acacctgttg tggtagaggc gggaaccggc acaggcaaaa cctttgctta
      241 tcttgtgccg gcactacttt caggcaagaa aactattctt tcgacaggtt ctaaaaacct
      301 gcaagatcaa ctttttaatc gagatcttcc cactattcaa aaagccctga aatacaaagg
      361 caaaattgcg ttactcaaag ggcgtgcgaa ctatttgtgt ttagagcgtt tagatcaagt
      421 gaccgcaatg ggcgtacttg gggataaatc cgttcttacc gatttaaaaa aagtcagtaa
      481 atggcaaaat gccactaaaa caggggattt aagtgaatgt attaccattg ccgaagatag
      541 cccgattcta ccgcagttag tcagcaccac cgagagttgc ttaggctcgg actgcccgca
      601 ttttaaagat tgttatgtgg tacaagcccg ccgtaaagcg atggaggcag acgtagtggt
      661 ggtaaaccat cacctattct gtgctgatat ggcagtaaaa gagaccggtt ttggtgagtt
      721 gatccctgaa gctgagctgg tgatctttga tgaagctcac caactgccgg atattgccag
      781 ccaatatttt gggcaatcgc tttcttcccg ccagttattt gatatttgta aggataccaa
      841 tattgtttac cgcactgaac tcaaagatct gtctcaatta ggcaaagcgg ctgatcactt
      901 gacgaaagta gtgcaagatt tccgattatt gatgggcgga gaagggcaga ttcgaggcaa
      961 tttgcgagag ttatttcgtg ataaaaaagt ggtcgatggc ttggtaaaag tggctgaaaa
     1021 tattgatttt ttaagtgaag tggcgaaaaa atcgctgggg cggtcggaaa tgttggataa
     1081 aattttcgag cggttagcag aagttaaggt tcaacttaaa aaattaatgg atactagtgt
     1141 gacaggctat tgttactggt atgaggcgaa tggacgatcc tttgggctgc atattacgcc
     1201 gcttatggtg gcagataaat ttggagaaca gttgaagaac cagcaaattg gttgggtgtt
     1261 tacctcagcc acactcgaag ttgggggcaa attcgatcat ttttgtcaac ggctgggcat
     1321 cgaaaatgcg gagcagttgg tgttacaaag tccgtttgat taccaacatc aatctttact
     1381 ctgtgtgccc cgctacttgc cggataccaa taaatccaat actttaactg ctctcgggca
     1441 attattaaaa ccggtgattg aggcgaataa agggcgttgt ttcttgcttt gtacttccta
     1501 ttatatgatg cgaggtttag ccgacttttt acgcgaacac agttcgctga atgtgttatt
     1561 gcaaggcgaa accagcaaaa gccgtttatt ggaaaaattt gtgaaagaag atcacagcgt
     1621 gttggtggcg acccaaagtt tttgggaggg gattgatgtg cgaggcgatg atttatcgtt
     1681 ggtgattatt gataaattgc cgttcacttc accggacgaa ccattactca aagcccgaat
     1741 ggaagattgt aagatacagg gcggtgatcc gtttaacgat attcaaattc ccgaagcggt
     1801 gattaccctc aaacaaggtg tagggcgttt aattcgtgat gtgaccgata gaggtgtagt
     1861 gattatttgt gattcccgtt tggtgatgcg aaattatggg caaactttct tgaaaagttt
     1921 accgccgtct agacgcacta gagatttggg gaatgttatt caatttttga aacaaaaata
     1981 gggttacaag cggtcagatt tctgcagatt tttgcaaaaa aacggataaa aataaccgct
     2041 tgttgaggag ttatatgttg tctacattgc tgcgtatggt tgcttctttg gcattgttat
     2101 ttgtgatgct ttatttaggc aagttaatcg tttatctatt ccccatcggg atcccggata
     2161 gtattttagg tatgcttatc ttattcggct gcttggttat cggcattgtt aaagtggaat
     2221 gggtgatacc gagcgcgaaa ccgctcacac gttatataac actatttttc cttccgattt
     2281 gtgtcgaact catcgaacat cttgagctgt tacgccaaaa tctgaacact tttgtattag
     2341 caacggcatt aagcacctta gtttctgtgg tcgcgattgg cgtgtttgca cagtggattt
     2401 ttcattacaa gagagggtaa aatgagctat ctttacactg tgttgacggt aatcatgttt
     2461 attgccggtt tgaaaatcag ccaaaaactc aagagcagtt ttctgaaccc tttcttaatt
     2521 gcactcgctt tgctaattgg tgtattactg atttttaata tcccttacca agactattat
     2581 caaggtaatt cccccttgaa taacttactt ggcgtttctg ttgtggcact tgcttaccct
     2641 ttttatgaac aattacccca tatccgtaaa aaatggcgac agattgtcgt gattttgctg
     2701 tttagtacca tcattacgat gataaccggg cttgggtttt cattattatt tggggcaagc
     2761 caagagatct tagccgccat tttgcctaaa tcggtatcaa tgccaatggc aattattatt
     2821 acgaatgaaa ttaatggaaa tgttgcaatc gcagcggttg gggtgatgat cgcaggctta
     2881 gtgggatcta ttttaggctt tacgcttctg cgcctggcaa aagtaagaaa tgtgatggcg
     2941 attgggttaa gtatgggagc tgcttcccac gcattaggca cggcaagatg cttagagcat
     3001 agtatgaaag ccggtagcta tagttctatc gcattagtgg cttgtggtgt gctgtcttct
     3061 atatttgcac ctttaatatt taacgttatc gtcacgttat gttactaaaa acagtgaaat
     3121 ctcaaacctt atttggtaac tggctgaaat caaggtacaa taccgtgatt tttcaatgaa
     3181 aatagagaat tatgcaagaa caaataacac aagaaaaaga tctttctacg cttaaaacct
     3241 ttaagcgttt atggccgact atcagcccgt ttaaagcggg tctgattaca ggtgctgtcg
     3301 ctttagtatt aaatgcgtta gtggattcta gtcttatcta tctcctcaaa cccttgctag
     3361 atgaaggctt tgggcaagct aataatgatt ttctgaaatt gatggcggtg cttgtagtag
     3421 tttttatttt agtgcgcggt attaccaatt atattgccag ttactgttta gcttgggtgt
     3481 caggcaaggt agtaatgaca ttacgccgcc atatttttca acatttaatg tatatgccgg
     3541 taagctattt tgataacaac ccgaccgggc gtttgctctc acgagtgact tacgataccg
     3601 aaatggtggc gagttctgct tctcattctt tagtgactat tgtgcgtgaa ggggcttatc
     3661 tgctgtcatt gtttgtggtg atgatctata ccagttggca gctttctatt gtgttatttg
     3721 tgatggctcc tatcattggg gtactgatca gtttcgtttc aaaatatttt cgtcaattaa
     3781 gtcgcaatat ccaaagttca atgggggagc ttactgtcac gacagaacaa atgcttaaag
     3841 ggcataaggt ggtactttcc tttggcgggc aggaaattga gaaagctcgt tttgaccgag
     3901 tcagtaatga tatgcggcgt aaaggtatga aagtcgtttc tgctgatagt atttctgacg
     3961 gtgtggtgca acttattgcc tcttttgcgt tatctgcggt gctttacgtt gcgaccttcc
     4021 ctgaagtgat gagtgagaat ttaaccgcag gttcattcac agtagtgttt tcttcgatga
     4081 tggcaatgtt acgccctcta aaatcactca ccaatgtgaa ctcacaattc caacgtggaa
     4141 tggcagcctg ccaaacatta tttgaatttt tagatttaaa aactgaaaaa gatcacggct
     4201 caatctctgt tgttaaagca gaaggcaatg tggaatttaa aaacgtgagc tttagttatg
     4261 aaggcaaaga tgaaaaagca ttaaataata tttctttcac cattcctaaa ggcaaaacag
     4321 tagcattggt tgggcgttcc ggctcgggta aatcaaccat tgccaatttg cttacccgtt
     4381 tttatgatgt gactgacggt gaaattttgc ttgatggcat taacattcaa gattaccgct
     4441 taaaaaattt aagagaacaa tgttcagtgg tttcgcagca ggtgcattta tttaacgaca
     4501 ctgttgccaa caatatagcc tatgctgcca ccgataaata cactcgagaa gaaattattg
     4561 tcgctgcaaa agctgcacac gcaatggaat ttatcgaaaa actggaaaat ggcttagata
     4621 cagtgatcgg tgaaaacgga gcaagtcttt ccggtgggca acgccaacgc ttggcaatcg
     4681 ctcgtgcatt actgcgaaat tctcctgtgc ttgtgctgga tgaagccacc tctgcattag
     4741 atacggagtc agaaagagcg atccaatctg cacttgaagt gctacagaaa gatcgtacgg
     4801 tgctggttat agcacaccgg ttatccacga ttgaaaaagc cgatgaaatt ttggtagtcg
     4861 atcacggaaa tattatcgag cgtggcagcc atacggaatt gttagcacaa ggtggggctt
     4921 ataaacaact ccatagttta caattcggag cctaatttgt aggggagaaa tatgtttctc
     4981 cccaattaat gataaaaaca gggcgaaaaa tatttcgtcc ctacaataat ttatttggat
     5041 actatgaaaa aactgacaaa acttttatct cttagtgctt tactggtctt aaccgcctgt
     5101 aattcggtac taaatgcccc aacagaggtg caacaaccaa cagtacaaat tccgcataac
     5161 gatccacaat ggcagcagca tttagcgaaa ctgagccaaa ttcaaggcta tactgcaacg
     5221 gggcaatttg gctatatttc gcctgaagag cgtttttctt cccatttcaa ctggcgttat
     5281 actaatccaa tccaatttgg gttagagctt tcctcgaatc tctcgactaa atcactgaaa
     5341 ttagagcgta ataaacgagg cttaacggtt tcggacagtg agggtaatag ccgttctgac
     5401 cgtgatgttg atgcgttaat gcaagagatt atcactgttt cgtttcctat cgatcagttt
     5461 gcctattggg taaaaggctt gcctgaaaaa gatggcaact atattgtgaa tgaaaaacgc
     5521 cagctgtcgc aatttagtta tccgcttaat ggcacgcttt ggaaagcaag ctatgtggag
     5581 tatcacgaag atcgtgtacc aaacttaccg aagctgattg tgcttgaaaa cggcactcaa
     5641 acgttgaaga tccgcattga aaaatgggcg tattaatgaa gaaagtcacc ttacccagcc
     5701 cggcaaaatt aaacctgttt ttatacatta ccaataagcg ggcagacggt tatcacgagc
     5761 tacaaacgct gtttcagttt ttagattttg gtgatgaaat tgagattgag atcacagaaa
     5821 gttcagaggt tgaattaatt aatccggtag aaggggtggc aactgaggag aatctcattt
     5881 accgagcagc aaaacttttg caaaaaacga ccgcttgtag gcaaggctgc cgtattggga
     5941 ttaaaaaaaa cctaccgatg ggcggaggtg ttggtggtgg atcttctaat gctgcaacag
     6001 tattagtcgg tttaaatcac ttgtggaata ccgagctttc attggaaaaa ttggcagaat
     6061 taggcttaag tttaggggct gatgtgccga tatttgttag aggtatggct gcttttgccg
     6121 aaggcgtggg ggaggtgtta accccttgtg atccacaaga aaaatggtat gtagtgctaa
     6181 aaccagaagt gtcgatttca accgaagcgg tgtttaccga cccgaattta cctagaaata
     6241 ctccaaaacg ccccttagcc gaattattat ctttaccgtg ggaaaacgat tgcgaaaaag
     6301 ttgtacgaga aaagtattct gcggttgaag atcttataca agaattgtta caatatgctc
     6361 agtttaggct aacaggcaca ggtgcttgta ttttcgccga atttgaaaca aaagcagaag
     6421 ccgagcaggt ttttgcacat aaaccggaag ccgtcttcgg ttttgtggcg aaagggcaaa
     6481 atatttcgcc attacatcaa atgttattcc aaatctaacc atcttaacct taaggatcaa
     6541 tccatgacag atattaaact gtttgcgggc aacgcaactc cggaacttgc taatcgtatt
     6601 gcaaaacatc tttatacctc attaggtaat gcaacagttg gtcgttttag cgatggtgaa
     6661 attcaagtac aaatcaatga aaatgtgcgt ggaggcgata tttttattgt gcaatccact
     6721 tgtgcaccaa ctaatgataa tttaatggaa ttgatcgtga tggtagatgc gcttcgccgt
     6781 gcatcagctg gtcgtattac cgcagtgatt ccgtatttcg gttatgcacg ccaagacaga
     6841 cgcgtgcgtt cagcccgtgt gccaattacc gcaaaagtga ttgctgattt cttatccagc
     6901 gtaggggtag atagagtctt aacctgcgac ttacacgcag agcaaattca aggtttcttt
     6961 gatgtgccgg tagataacgt atttggttcc cctgtgttaa tcgatgatat tttgaaaaaa
     7021 tccgatttgg tcaaccctat cgtggtttct ccagatattg gtggggttgt tcgtgcaaga
     7081 gcggtggcaa aattattaaa tgataccgat atggcaatta ttgataaacg tcgtccaaaa
     7141 gcgaatgtat cacaggtaat gcacattatc ggtgatgtgg ctgatcgtga ctgtatttta
     7201 gttgatgata tgatcgatac tggtggtact ttagtcaaag cggctgaagc gctgaaagaa
     7261 cgtggcgccc gtcgtgtctt tgcttatgcc acacacgcgg tattttcagg ctcagcagct
     7321 caaaatttag cgaatcctgc tttagatgaa attgtagtaa ctgatactat tccactgagt
     7381 aatgagatta aagcattaga taaagtacgt gttttaacat tatccggtat gttagcagaa
     7441 gcaattcgcc gtattagcaa tgaagaatcc atttcagcaa tgtttgatgc ctaatttatg
     7501 agataaaaac ccagtcgaaa gattgggttt ttcatatctg ttcactacta tatttagttt
     7561 aagataattt gtatgtattc cctgattcgt aaattacttt ttgcactaga tacggaaaaa
     7621 gcacatcaat tctctattca ggcacttgct ttagccggaa aatcgccttt ttcgattctg
     7681 ccaacacccg ataatccgac ccaagtaatg ggactcacgt ttaaaaatcc aatagggctt
     7741 gcagccggag cggataaaaa cggtgaagcg atagatggtt ttgggaaatt aggatttggg
     7801 tttattgagg ttgggactat tactcctctc gctcaagacg gaaaccctaa accgaggcaa
     7861 tttcgtattg tagatgcaga gggaattatt aaccgcaatg gatttaataa taaaggcgtt
     7921 gatgttttag tagaaaatgt aaaaaatgca acctatagtg gtattttagg tattaatatt
     7981 ggaaaaaatg cggttacacc aattgagcat agctttgatg actaccaaat ttgtttgcgt
     8041 aaggtttacc aatatgctga ttatgtggcg gtgaatattt catcacccaa taccaaaaat
     8101 ttgcgcagtt tacaatatgg tgaggcatta gatgatttgc tgcgaaacct caaaaatgag
     8161 caggcacaac tttcgcaaaa aatggggaaa tatcgaccgc ttgttttaaa gattgcgcct
     8221 gatttaaccg atgaagaaat cgtttctgta gccgatagtc ttattcgtta ccaaattgat
     8281 ggggtgattg ccggcaatac taccttgtct cgtgaaagta ttgccggatt accgtattcg
     8341 gaacaactgg gtggattaag tggcaagcca ttacactcat taagtacaag gttaatttca
     8401 aaattatctg ccgagttggg cgagagaata ccaattatag gttgtggggg agtccattcg
     8461 ttagagagtg ggcaggagaa agtgaatgca ggtgctagtt tattgcaagt ctattccgca
     8521 atgatttacc aaggaccatc attaattcaa accttagcca aacaccttca gctgaacagt
     8581 tagggataga tttctagtta aaaatgattg gttaggttta tttctgccat cttagtggaa
     8641 tagatggcgg tattagctat ctatcaaaaa tagacaaaat tgcctatttt tgctatcttg
     8701 cactgcaaat ttatctacaa aatttaaaca aattttataa aattatataa aaatcgttta
     8761 aaatcaaata gataataagt tttaatcatg atttttagta tatgcctcaa gagaggttta
     8821 attcggaaat tgttgtttta ctgaaatttt ttcgataaga attggtctaa aaatcaccaa
     8881 acaaacaaaa tttgttaaaa ttttgttatt tatcacctca atcgttaatt tataaggaag
     8941 aatactatgt cagagaactt aagaaatgac gtagatccaa tcgaaactca ggattggtta
     9001 gcatcactcg attcattaat tcgtgaagaa ggtttagagc gcgctcaatt tatcattgaa
     9061 caagttatta gccaagctcg tgcaggtggc gtggcattac caacaggcgt aacaacagat
     9121 tatgtcaata ctatccctgt ttccgagcag ccagcttatc cgggtgatca taaaatcgaa
     9181 cgtcgtattc gttctgcggt acgttggaat gcgattgcgg cagtacttcg tagccagaag
     9241 aaagatcttg acttaggtgg tcatatttca actttccaat ctgcggcaac tatgtatgaa
     9301 gtgtgtttta accacttttt caaagcacca accgaaaaag atggtggtga tttagtgttc
     9361 ttccaaggcc acgcagcacc gggtatgtat ggtcgtgcgt tcttagaagg tcgtattacc
     9421 gcagaacaaa tggataactt ccgtcaagaa gcatttacag acggtttatc ttcttaccca
     9481 caccctaaat taatgcctga attttggcaa ttctctaccg tatctatggg tttaggaccg
     9541 gtaaatgcta tttaccaagc tcgtttctta aaatatttag aaaaccgtgg cctaaaagat
     9601 acttcggctc aaaaagtata tgcattctta ggcgatggcg aaatggatga aatcgaatct
     9661 aaaggtgcat tatcattcgc cggtcgtgaa aaattaaata acttaatctt cactattagc
     9721 tgtaacttac aacgtttaga cggtccggtt aacggtaacg gcaaaatcgt gcaagaatta
     9781 gaagcactct ttaccggttg tggctgggaa gtgattaaag tgttatgggg tagtggttgg
     9841 gataaactgc ttgaaaaaga tacttcaggc aaacttaaac agttaatgat ggaagtgctt
     9901 gatggtgact atttaacctt caaatccaaa aatggcgctt acgttcgtga acacttcttc
     9961 ggtcgttacc ctgaaactgc agcattagtt gctgatatga cagacgatga aatttgggca
    10021 ttacgccgtg gtgcacacga ttctgaaaaa ctttatgcag cctatgcaaa agcacaaaaa
    10081 tcggacaaac cggttgtaat tttagctcac caagtgaaag gctaccgtat tcctgaagcg
    10141 gaaagtaaaa atactgctca ccaatcgaaa aaaatgtcat tagatagctt aaaaggcttc
    10201 cgtgactact tcgagctacc attaaccgat gagcaagtag aaagcctaga gtatgtaaga
    10261 ttccctgaag gttctgaaga gtacaactac ttacacggac aacgtaaagc cttaaacggt
    10321 tatgtgcctg tacgtaaacc gaaatttacg gttgatttca aagtgcctga attaagcgaa
    10381 ttccaagcat tattggatga gcaaccacgt ggtatttcaa ccacaatggc gttctctcgt
    10441 gtattgaata ctttattgaa agataaaaat atcggtcagc aaatcgtacc tattattgcg
    10501 gacgaagccc gtactttcgg tatggaaggt ttattccgtc aaatcggtat ttataaccca
    10561 catggtcaaa actatgtacc gtcagaccgt gatttagtag cttactaccg tgaagcaaaa
    10621 gatggccaag tgttacaaga aggtatcaat gagttaggtg caacagcatc ttgggtggca
    10681 gcagcgactt cttattctgt tagcaactta ccgatgatcc cattcttcat ctactactca
    10741 atgtttggtt tccaacgtgt aggcgatatg atgtggttag ccggtgacca attagctcgt
    10801 ggctttatga ttggtggtac ttcaggtcgt acaacattaa acggtgaagg tttacaacac
    10861 gaagatggtc atagccatat tcaagcaggt gtaatcccga actgcgtcac ttatgaccct
    10921 gcatttgcct ttgaggttgc ggttattgtt caagacggta ttcgtcgtat gtatggtgaa
    10981 aaccaagaag atatcttcta ctacattact accttaaatg aaattaccga acagccggca
    11041 atgccggcag gtgcggaaga aggtatccgt aaaggtttat ataaatttga aactgttgag
    11101 ggtaaaggta aaggtcacgt acaattatta agctcaggtg caattatgcg tcacgtgcgt
    11161 gcagctgcac aaattctcgc gaatgactac ggcattacag cagatgtatt ctcagcacca
    11221 tcattcaatg aattaggtcg tgatggagca gatgtggctc gttggaactt attacaccca
    11281 actgaaacac cacgtgtacc gtacgttgct caagtgttac aagatttacc aactgttgct
    11341 tcaaccgact atatgaaaat gtacgcagag caaatccgtg cttatgtacc aagtaaacac
    11401 tatcacgtgt taggtacaga cggtttcggt cgttcagaca gccgtgcaaa cttacgtgaa
    11461 cacttcgaag ttgatgagcg ttatgtagta gttgcagccc tcgctcaatt agcgaaagaa
    11521 ggtacagttg aaaacaaagt ggttgcggaa gctattacta aattcggctt aaatgtagat
    11581 cgtattaacc cattatatgc gtaatttcta atactctctc ccttgatggg agagagacag
    11641 ctaaaggttt cgtttagaaa cttttagcag agagggtatt agttttattt gcaaaaatgt
    11701 tgagaaaatc aaccgcttgc attcccctct ccctgatttt tcttcttaca aagaaaaatc
    11761 tgtccttccc acaatgggag agggggtaac tcaagaagga tttcaaaatg tcaaaacaaa
    11821 ttaatgtgcc ggacatcggt tcggatgaag tcagtgtgac tgaagtgatg gtaaaagttg
    11881 gtgatactat ttcagtagat caatcaatta ttaacgtaga aggcgataaa gcctctatgg
    11941 aagtgccggc tcctgaagca ggtgtggtaa aagaagtttt agtgaaagtg ggtgataaag
    12001 tttcaaccgg ttcaccaatg ttaattttag agtcagcaga tgctgctcct gctcaagaag
    12061 caccaaaagc agaagcagct cctgctgctc cagtagcaac aacttcagcc gttgttgaag
    12121 taaatgtacc tgatatcggt ggcgatgaag ttaacgtaac cgaaattatg gttaaagtag
    12181 gtgatagcgt tgaagtggat caatctatca tcaacgttga aggtgataaa gcctcaatgg
    12241 aagtgcctgc accggttgcc ggcgtagtaa aagaaatctt aatcaatgtg ggtgacaaag
    12301 tttcaactgg taaattgatt atgaaatttg aaacggcttc cgcagctaca gcacaatctg
    12361 caccggttgc ggaagctgct ccagctcaag cttcggcatc agcgattaaa gatgtaaatg
    12421 taccggacat cggtggtgat gaagtaaacg taactgaaat tatggttaaa gtgggtgatt
    12481 ctgtttcaga agaacaatct ttaatcacgg ttgaaggtga taaagcttca atggaagttc
    12541 cggctccatt tgccggtgtg gtgaaagaaa ttttagtgaa atcaggtgat aaagtttcaa
    12601 ccggttcatt aattatgaaa tttgaagtag cgggtgcggc accggctccg gcggctgctc
    12661 aagcggcttc agctcctgct ccacaagcag cagctccggc gaaagctgac gcagctccgg
    12721 caggtcaaaa ccaatcaggt ttaagccaag aacaagtggt ggcttcagct ggctatgcac
    12781 acgcaacacc ggtaattcgc cgtttagctc gtgagtttgg tgtaaaccta gacaaagtaa
    12841 aaggtacagg tcgtaaaggc cgtatcgtta aagaagatat tcaagcatac gttaaaacgg
    12901 ctgttcaagt atttgaaaaa caaggcggaa cagcagcggc agcaacaggt gcggcaaacg
    12961 gtgcaggctt aggtttatta ccgtggccga aagtagattt cagcaagttt ggtgaagttg
    13021 aagaagttga attaagccgt atcaataaga tttccggtgc gaacttacac cgtaactggg
    13081 taatgattcc tcacgttaca catttcgatc gcacagacat taccgagtta gaaaacttcc
    13141 gtaaagagca aaataaagaa gcggaaaaac gtaaattaga cgtgaaaatt acccctgtgg
    13201 tcttcattat gaaagcagtg gcaagtgcat tagaagcctt ccctcgtttc aacagctcaa
    13261 tttctgaaga tgcacaacgt ttaaccttga aaaaatacat caatatcggg attgcggttg
    13321 atacgccaaa cggtttagtg gtgccggtgt tcaaaaatgt gaacaaaaaa ggcattatcg
    13381 aactttctcg cgaattaatg gaagtctcga aaaaagcccg tgaaggtaaa ttgacagcat
    13441 ctgatatgca aggtggctgt ttcacaattt caagtttagg cggtattggt acaacgcact
    13501 ttacgccaat cgtgaatgca ccggaagtgg ctattttagg tgtgtctaaa tctgaaatgc
    13561 aaccgatttg gaatggcaaa gagtttgaac cacgcttaat gcttccgctt tcattatcat
    13621 tcgaccaccg tgtgatcgat ggtgctgatg gtgcgagatt cttaagctat attaatagcg
    13681 tgttggcaga tattcgtcgt ttagtgatgt aattcggtaa agctcctcct aaaaaagtcc
    13741 ctctttagaa aagaggggta gggggagatt tgatagacgt aatttacgaa gagaataaat
    13801 tatttggtag aaatttgtgt ttgattgatt gctctctcac ttcgctttat attctgccaa
    13861 atctccctta cccctctttg ctaaaggggg ggaataaaaa gaggaaaaac tatgagcaaa
    13921 gaaattaaaa cccaagttgt cgtacttggt gcaggtccag caggttactc agcggcattc
    13981 cgttgtgccg acttaggctt agaaacagta attgttgagc gttattcaac cttaggtggt
    14041 atttgcttaa acgtaggttg tatcccttct aaagcattat tacacgttgc aaaagtaatt
    14101 gaagaagcta aaaatgcagt acacaacggt gtgacctttg gtgagccaac gattgattta
    14161 gatcaggtac gtgctggtaa agaagccgtt gtttcaaaat taaccggtgg cttagcagga
    14221 atggctaagg ctcgtaaagt gacagtagta gaaggcttgg ctgcatttac tggtccgaat
    14281 acgttagtcg ctcgtgatcg tgacggcaat cctacaacta tcacgttcga taatgcgatt
    14341 atcgcagcag gttctcgtcc gattcaacta ccatttattc cacacgaaga cccacgagtt
    14401 tgggattcaa ccgatgctct taaattaaaa gaagtaccga aaaaactcct tattatgggt
    14461 ggtggtatta tcggtttaga aatgggaacg gtatataacg cgcttggttc agaagtggaa
    14521 gtggttgaaa tgttcgacca agtaattcct gctgcagata aagatgttgt agcgatttac
    14581 accaaacaaa tcgagaaaaa attcaagcta atgcttgaaa ccaaagtaac cgcagtagaa
    14641 gctaaagatg acggtatcta tgtatcaatg gaaggtaagg cttgcaacga tactaaacgt
    14701 tatgatgcgg tattagtcgc tatcggacgt gtgccaaacg gtaaattaat tgatgccggt
    14761 aaagctggag tggaagtaga tgagcgtggc tttattcgtg tagataaaca aatgcgtacc
    14821 aatgtgccac acatctttgc tattggtgat attgtcggcc agccgatgtt agctcacaaa
    14881 ggtgtacacg agggacacgt ggcagcagaa gtgattgcag gaatgaaaca ttacttcgat
    14941 ccgaaagtca ttccgtccat cgcttatact gaaccagaag tggcttgggt tggtaaaact
    15001 gagaaagagt gtaaacaaga aggcttgaac tacgaagtgg cgaaattccc ttgggctgct
    15061 tcaggtcgtg cgattgcttc tgaatgctca gaaggtatga ccaagttaat ttttgataaa
    15121 gatactcacc gtgtattagg tggtgcgatt gttggtagca atggtggcga attattaggc
    15181 gaaatcggtc ttgcaatcga aatgggctgt gatgctgaag atatcgcatt aaccattcat
    15241 gctcacccaa cgttacacga atcggtagga ttagcggcag aagtatttga aggttcaatt
    15301 acagacttac caaatgcgaa agccaaaaag tgttaatcag atta
//
LOCUS       DANLUT010000046        15014 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLUT010000046 DANLUT010000000
VERSION     DANLUT010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15014
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(22..624)
                     /locus_tag="PXB38_001118"
     CDS             complement(22..624)
                     /locus_tag="PXB38_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5353448.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(626..1645)
                     /gene="purR"
                     /locus_tag="PXB38_001119"
     CDS             complement(626..1645)
                     /gene="purR"
                     /locus_tag="PXB38_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL5353449.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(1781..2509)
                     /gene="cmoA"
                     /locus_tag="PXB38_001120"
     CDS             complement(1781..2509)
                     /gene="cmoA"
                     /locus_tag="PXB38_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL5353450.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFSDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNANGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(2519..3301)
                     /locus_tag="PXB38_001121"
     CDS             complement(2519..3301)
                     /locus_tag="PXB38_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5353451.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTETVVRAINKFLEK"
     gene            3420..3986
                     /gene="seqA"
                     /locus_tag="PXB38_001122"
     CDS             3420..3986
                     /gene="seqA"
                     /locus_tag="PXB38_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL5353452.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            3996..5414
                     /gene="menE"
                     /locus_tag="PXB38_001123"
     CDS             3996..5414
                     /gene="menE"
                     /locus_tag="PXB38_001123"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL5353453.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQKASQ
                     RQAVLDDNGVDLIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEGKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            5407..8784
                     /gene="mscK"
                     /locus_tag="PXB38_001124"
     CDS             5407..8784
                     /gene="mscK"
                     /locus_tag="PXB38_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5353454.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQAVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQLNLLINIELNQQQAQTISDALQQKLQQQSFWVKSNNPID
                     LEWFSKFVDITHYQFIDIGKKLNFSNWRDNLLPASILVGILLLLAIFINRQKDKIKQK
                     LHQINNRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFIAITYISFENPQEVWTW
                     GLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWIIALLLNTSIF
                     TNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKESKSILLTIV
                     KLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYRAFSISSRRL
                     AYRRLQEKREAAEAKARAKAEQNDENPDGVELPFELKEDSIAVSEVKNQMLKLTDFVL
                     WIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLLTAILIIVVM
                     VVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTLGMSWSKLQW
                     LLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSKIRIRATTLV
                     DFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRLLLQVAEENP
                     KVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLFNEHNIDIAF
                     NQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            8787..9869
                     /gene="aroC"
                     /locus_tag="PXB38_001125"
     CDS             8787..9869
                     /gene="aroC"
                     /locus_tag="PXB38_001125"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL5353455.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKDGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            9888..10715
                     /gene="mepA"
                     /locus_tag="PXB38_001126"
     CDS             9888..10715
                     /gene="mepA"
                     /locus_tag="PXB38_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL5353456.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTYLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQAPVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            10788..12707
                     /locus_tag="PXB38_001127"
     CDS             10788..12707
                     /locus_tag="PXB38_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5353457.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNVVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            12813..13211
                     /gene="secG"
                     /locus_tag="PXB38_001128"
     CDS             12813..13211
                     /gene="secG"
                     /locus_tag="PXB38_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL5353458.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQFEDLSQFEDLSQ
                     FEDLSQFEDLSQVEQKQVEPVKIENSDIPQ"
     gene            13236..13321
                     /locus_tag="PXB38_001129"
     tRNA            13236..13321
                     /locus_tag="PXB38_001129"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13270..13272,aa:Leu,seq:gag)
     gene            13523..14089
                     /locus_tag="PXB38_001130"
     CDS             13523..14089
                     /locus_tag="PXB38_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL5353459.1"
                     /translation="MARSTTPLNSTQIDKAKPKEKEYTLADGKGLYLLVKPNGTKLWR
                     FNYYKPYTNPKKQALISIGSYPDVSLQQARQTKDEYNALLAQNIDPQAHRIETTITEQ
                     NRLVNTFAYVAEQWKASKEDVIKPLTLSKNWRIAEIYLLPHLKDLPIDKIIPAVVKPV
                     LDIPYKANKAKMFRKSMRLLNEILDYRK"
     gene            14184..14774
                     /locus_tag="PXB38_001131"
     CDS             14184..14774
                     /locus_tag="PXB38_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5353460.1"
                     /translation="MPEFCERLQNSNLELLTRYLIQWQLLTMIRANEAVTAEYTDIDE
                     EKRLWVIPPQKMKQKHGGKPHIVPLSKQAYSLLQKIKTLANGNGYLFPSVRTKTGRMN
                     PQTVNKAIRKSLGYSKEALTAHGLRKTTSSYLHEKGILPDVVELCLSHTIGGLRGVYN
                     KAKYLPQRREAMQLWGDYVAQCMAKSGVSHLKLVAW"
BASE COUNT         4816 a         3134 c         2912 g         4152 t
ORIGIN      
        1 atgaaatgct cgtcttttgt ttcacttttt atactgcttt ttatttttat accatttcca
       61 gcctaaaaat agaataacaa tgcctaaaat ggcaaaaatg aggtgctgcc cattagctac
      121 ttgttctttt agccaatcca aattagatgc cccatagtcg cctaaataaa cccaaattgg
      181 cacagagata atagcggcac agaaatcaac taataaaaat tttacgaagc tgacttttct
      241 ggtaatacct gaaactaagt aaaccaccgc gcgcaagcca ggtaaaaaac gagccataaa
      301 aagtagtttc catccttgtt tttcaaaacg ttcttgcacg gttgcaaaac gttcaggtgt
      361 cgcaacattc ctgattaatg gaaatttgag aattttttcg ccatagattc tacctagcca
      421 gtacattgtg ctatcgccaa ctaatactcc taacatacta acaaccagca tccaatgcac
      481 attggtgtag cctaatcctg aaataacacc accggatact aacgtaatat cttcaggaat
      541 cggcacaccg aaaccacagg caagtagcac aagaaaaaca gcccaataac catagctact
      601 aaaaaattca atcaatgttt ccatattact ccttaatgtt taaattccga accgatttac
      661 gtttgaccaa ttcaggaaag aactctaata ctttaggctc ttttgcgttt tcgttatctt
      721 caatacgttc taataataat tctaatgctg ccgagcctaa gcgagatttt gactgatgga
      781 ttgtcgtaag aggcggtgca taaaagcgtg agctatgcac gttatcatac ccgatcactg
      841 aaatatcttg cggcacattc agcccttttt cggtaatagc tgaaattgcc cctagtgcca
      901 ttgagtcatt aaaacaaaaa accgcggttg gtaatttttc actgctctta agcaaattat
      961 tcatacactc ataccccccc tcaggttcaa aatcgccttc ttgaatccat tcttcacgaa
     1021 tagacaaacc cgcctcagat agcgcttttt taaaaccttc aaaacgggtt cttgcaattt
     1081 ctttatctct attgccggta attacagcaa tatcttgatg cccgttttca attaaatgct
     1141 gagtcgcaat atagccacct tcaacaccgt gatctaaaat aatatcactg cgttcatcac
     1201 ttcgtcccca atccataatc accattggga tattgctgtt ttcaaagata tcaaatgaat
     1261 tagctgtata ttcggagcac atcaccaaaa tgccatcaac ccgttttttg atgagcatat
     1321 ctaaatgatt ttgaattttc tcaagtttgt tttgagtatt gcacaaaaat agtgaatacc
     1381 ctttgctata gcaaaattcc tctaccgcta acacaatttc agcgaaaaac ggtgattcgc
     1441 tggttgtaat gatcataccg atagatttag tcgtattaat tttcaaactc cgcgctacag
     1501 cactaggaga atagttcagc gctttaatag cctcccaaac tgcttttgta gtgtcctctg
     1561 ctacaaagcg ggttttgttt ataacgtgag aaaccgttgt agtcgataca ccagcatatt
     1621 ttgcgacatc ttttatcgtt gccatacctt tttcctccta aataagtagt ggtgcattat
     1681 aactgattct aactgacttt tattataaag aaatagatag aatgcaagcg gttgcttttt
     1741 atcaagaatt tgcaaaaaat tttacaaata tcaccgcttg ttaggcttta attgcaatca
     1801 ttgagccaaa attaaagcat tgaaaccaaa gttcaacttg tgtaaaacca gcttcttgca
     1861 gacgtttttt atgggtttca atactatctg ttcgcatcac attttccaaa gcattacgct
     1921 tttggctgac ttccaattca ctgtagccat ttgctcgttt gaatgtgtga tgaaggtcga
     1981 tcaatagctc gttcatttcc tcactctcaa aggtaaattt ttccgataac actaaaatgc
     2041 cattggcatt taatccttga taaatcttct gtaataatgc taggcgatct tctcttggta
     2101 aaaattgcaa ggtgaaatta agtaccacca ttgaagcatt tttaatttca atgtggcgaa
     2161 tatcatcaag taaaatcgtc accgggatct cagagtgata agcacttaaa tgggttttac
     2221 aacgctcaac catcggctga gaattatcta ccccgataat ctgcacattc ttcgcattca
     2281 cattacggcg aatagataaa atccctgcgc ctcgtgaaca acctaaatca taaacatttg
     2341 aattatctgt gacaaaacgc tccgccaaca ttccaatagc agtaataata ttggaatagc
     2401 ccggcacgga gcgttggatc atatccgaaa acacttcagc aaccgattca tcaaaagtaa
     2461 aatcgcccaa tttctcaatc ggagcggaaa ataatgtatc tctttgcatt tttctccctt
     2521 atttttctaa aaatttattg attgctctca caacagtttc tgttttttct gcgtgaaccc
     2581 agtgatcagc gtttgccaca atgaaagatt tggcctgcgg aaattgtgcc aaaatcgttt
     2641 gtgtatgctc tgcttgaata taatccgata atgcaccttt aataaacaag gtcggtttat
     2701 ccacaaatac ctgctgccac cccatcacat tctgataatt atcttttagc gcctgtaaat
     2761 taaaacggaa agattgctcg ctttgggcat caaaagattt caacataaac tgttgcacgc
     2821 cttcatctcg aatatattca gccattatcg ctttagcttg ctgacgattc tggggtttag
     2881 cttctttcac cgcaaataag gctgccataa cctgctgatg ccgattttgg gtataagtga
     2941 ccggggcaat atcaatcact accaatttct ccaccagttc aggagcaaat gcagccaatg
     3001 ccatcgcact ttttccgccc attgaatgcc caaccacaat agcattttgg atatttaatt
     3061 ctgtgagtaa ttgtgctaaa tcttgtgcaa tcaaagcata attcatttcg tctgaatgaa
     3121 aagatcgccc gtgatttctg agatcaacca ttaaaatgga gtaacgttct gcgaacggtt
     3181 ttgctattgc gcctaggtta tttaaatctc caaacaatcc atgtaagaag atcatcgtct
     3241 gagcattagc atgattattc gaaggttggt aattaaagtt taactgcgat ttttctgtca
     3301 tataaatgtc attgttcata taaattttca gcgatgatcc tctataaaaa acaatagaaa
     3361 tgcgtataat agcaaacact attaacgcat ttaatacccg cagatatttg aggatcccga
     3421 tgaaacgaat cgaaattgat gatgaattat atcagtatat tgcaagccgt acacaatcta
     3481 ttggtgaaac tgcgtcagat atattacgcc gtctattacg cctgccacaa tcgcctcagc
     3541 cttttgtttt agtacaagaa cacatgatca acgagcttaa agagcttgtc aaaacgcctt
     3601 ctcgtgctac gaaaaaaaat gaatccaatg cagaaaaaac cgttgaaaaa ttggaaaaca
     3661 ttttaaattc cgagcatttt atgaacgaaa ataaaaatgt agtgcgtttt actatgctat
     3721 tagccgcatt atatcgagca aatccggagg cttttgctaa agcaaccgaa aaagtgcgtg
     3781 gtaatgaacg tatctacttt tcgcaaagtg aagccgaaat tttagctact gggagtggag
     3841 taaaagccaa gcagatccca gattcaccgt tttgggtaat taccaataat aataccgcac
     3901 gcaagggact tattctcaaa ggcgtaatgg aatccatgaa agtaccaagc cagttaatcg
     3961 aacgcattca agcgcttttt atctaattaa ttgaaatgct catcaattct actcgctttc
     4021 ctacccaatt ttgggctgct cattcagccc aaaatgtggc gattatttgg gaaaaaggaa
     4081 catcagacta tcttaaccac cttccatcaa acatcacttg gtatagtttg aatcagttga
     4141 ttgcgcaagc tattttcgtg ttgcaacaac aaggtgctac tccgcacagt ttgattgcct
     4201 attgtggttc tcatcggctc attggcttgc tcacttattg tgctagcctt gctttggggg
     4261 ctaagattct aatgcttaac cctgctcaaa aagcaagtca acgacaagca gtcttagatg
     4321 acaatggtgt tgatctcatt attaatgatg ccgactttgc aaaattttca gcaaaaacga
     4381 ccgcttgtaa tgccttccct acgattgatt ttgaaaaacc agctacccta accctaacct
     4441 caggctcaag cggtaaacct aaagcagtgg tgcattctat agcggcccat ctctatagtg
     4501 ccgaaggagt atgtgaatta atggcatttg agcagccaaa ctcttggcta ctgagcttgc
     4561 ctctgtttca cgtttccgga caaggcatta tttggcgttg gttatttaaa ggtgcaacac
     4621 tgtatgttca cgaaggcaaa agtgattttt ttctttcagc acaaaaagtg agccatctct
     4681 ctttagtccc cacccaatta caacgctatt taaaccaatt agattctatg gtcagccaaa
     4741 aatgtttact gggtggatct atgcttccag ccgaattgat tgctcaagca caacaatctg
     4801 ggatgactac cttttcaggc tacggaatga ctgagatggc atcaaccatt tgtgcagtag
     4861 aaaatgattt aaacagtgtt ggttttccgt taaaacatcg ggaactaaaa ttagaaaatg
     4921 gtgaaatttg ggtaaaaggc aaatcactcg gcttaggcta ttggcaaaaa aatgggcaaa
     4981 ttcgaccgct tgtaaacaca caaggctggt ttgccactaa agatcgtggc gaatggaatc
     5041 acaaaaaaca gcttgtaata aaaggacgat tggataatat gtttatttca ggaggggaaa
     5101 atatccaacc tgaggaaatt gaacaactga tttttcgttc tcagcttgtc gaacagatta
     5161 tcgtgttgcc gattgaagat aagcaatttg gacatcgacc agtggcgttc ttacaattca
     5221 agcaatctga ttcaaaaaat gaactccata aattaaaaat ttggctgtct gataaattag
     5281 aaagattcaa acagcctgtt gcctattatt tactggatat agaaaaatac caaaaacaag
     5341 gcttaattaa actatcaaga acacaattac aacaagattt aaaactcaaa gtattaaagg
     5401 aaatctatgt ttagaccgat tttaaaaaca tttgtgctta gtttaggctt aatgctaaat
     5461 agttatgcat tagctgaatt gccaacccaa caggcagtgc aaacgcagtt agatagcgcc
     5521 aaaaaattag atcaagccga tgcggataat aaggcattgg ttcaaacact tgaagatacg
     5581 cttgctttct tagcccaaat tgataaacaa aaagcagata atcaggcatt gaataaatct
     5641 attcaagatt cccaaaaagc attaaaaaca agccaacata atcttgaaaa attaaaagag
     5701 gtgactattg caagtgtcga taatttaaca caaaaagcga caacagattt acaaaaagag
     5761 ttaacctcta cacaatctca gctggaaaca gtacaacacg atttaagtat tattaataat
     5821 aatttagttg cacaaaatac cgcaccggat aaggctcaaa cggccttaac cgagatggtt
     5881 aaacgtaaac aggaaattag tagccaactt tcagcgacta acattaaaaa tgaactacag
     5941 acaaagttag aagtagaatt agaattaata gaattaaaaa acacttacaa tcaaatatta
     6001 cttggtggca gcgaggattt atctgcgctt tactctgctc aattagatga aaaaaagcaa
     6061 gagcagcaaa atctacaagc agaaattgca aacctgcaga ctgctatcaa caataaaatt
     6121 gtagaagagt ctcagaacaa gctagatcaa gcacaagcgg ttcaaaatca gcaaaataat
     6181 gcaacgacga acccagttat cttgcgtgaa ttggatataa ataccaaagt cacacaagag
     6241 ttgctaaaac agaccaaaga tatgacgcag ttatcacaag ataatttgcg aatcaaaagt
     6301 gtgctagata atttacagca aacccaacgt aatattgaag aacaaatcag ttctctgcaa
     6361 ggtacgttgg tgctttctcg tattattaat aagcaaaaac aatcattacc acaagatgaa
     6421 atgatttccg gactatcaaa acaaattgca gatttacgtg tacgtgtttt tgatatcact
     6481 gaatttaaag actcttttgc ggacataaat gcttatatca gccgcataga gcaagatgaa
     6541 aaaacaacct ttacgagtaa agagaaagaa caactgagta aaattttaca ggaacgttct
     6601 gacactttaa ctgagatgat taaatcatta aataatcagc tcaatttatt aatcaatatt
     6661 gaactaaacc agcaacaagc gcagaccatt agtgatgcgt tacagcaaaa actgcaacag
     6721 caaagcttct gggttaaaag taacaacccc attgatcttg aatggtttag taaatttgtc
     6781 gatattaccc actatcaatt tattgatatt ggaaaaaaac tcaatttttc aaattggcgg
     6841 gataatttat tacctgcaag tattttagtc ggaattttat tgctattagc catctttatt
     6901 aatcgccaaa aagataaaat taaacaaaaa ttacaccaaa ttaataatcg actaaaaatt
     6961 gtcgccacag atagccaatg gaacacccct cttgctattt tttggacatt agtgctttgc
     7021 ctgccaagta cactaatgtt cttagccgga tttattgcta tcacttatat ttcatttgaa
     7081 aatcctcagg aagtctggac ttggggatta aaaatggcaa tttattggct gtattttgcc
     7141 tttttagtgg cgatgctacg cccgcacggc ataggacata ttcactttaa tatgccacaa
     7201 aaaagtaatg aaatcttccg taatatttta aaacgttcgg tatggatcat tgctttatta
     7261 ctgaacacct ctatttttac aaacttagag atgggaatat cttacgacat gcttggacaa
     7321 acaatgacta tttttgtcct tatattaatg atttggatga ttgtaccggc atttaggcaa
     7381 gctatttcca cctatgagaa tgtcacaaca gaagagaaaa aagaatctaa aagtatttta
     7441 ctcactattg tcaaattagt gctactgctt gcccctatca ttcttatcat tctgattgca
     7501 ttgggctatt actatactgc actggtgatc attgagcatt tagtagattc ttattttgcg
     7561 atcattactt ggattattat tcgtaatatt ctctatcgag cattctctat ttcatcacgc
     7621 cgtctggctt acagacgttt acaagaaaaa agagaagcag ctgaagccaa agcacgagct
     7681 aaagcagaac aaaatgatga aaacccggac ggtgtcgagc ttccttttga gctaaaagaa
     7741 gactctattg ccgtaagcga agtcaagaac caaatgttga aattaactga ttttgtgctt
     7801 tggattggct tatttgtgct gctttactgg gtttggtcgg acttaattac tgttgcactc
     7861 tacctagacg gcgttacctt atggcaacaa agtgttacaa cagaagccgg gattgtaatg
     7921 gaatccatta ccctgctgaa tttactcact gctattctga ttattgtggt aatggtggta
     7981 ctcattcgga acttatccgg tttacttgaa gccctgattt tctcgcactt caagttatcg
     8041 caaggtacac catacacaat taccacactc ttaacctatt tgattattgc gttaggggca
     8101 atctttgcgt tcggtacatt agggatgtct tggagcaagc tccaatggct actaactgca
     8161 ctttctgtcg gtctgggttt tggtatgcaa gagatctttg caaacttcgt ttcagggatt
     8221 atcatcttgt ttgaacgtcc aatgcggatt ggcgacacca ttaccatcgg cacttacagc
     8281 ggtacggttt ccaaaattcg tattcgtgcc acaaccttag tcgattttga cggcaaagaa
     8341 gtgattgtac caaacaaagc attcgtaacc gaacgcttgg tgaactgggc attaagcagc
     8401 accgcaaccc gcattattgt tcaagtcggc gtggcttacg ggtctgattt agaattagtc
     8461 aaacggctgt tattacaagt ggcggaagaa aatccgaaag tcttgaaaga tccgcaacca
     8521 agggcttatt tccttacctt tggtgcaagc actttagatc acgaattaag agcctatgtg
     8581 aacgatttat ctgatcgtaa cccaactatt gatgcactaa atacacgcat ccaccagctc
     8641 tttaatgaac ataatattga tattgcattt aaccaattag atgtttatat caaaaacaac
     8701 gatacacaag atgaaattaa agtagattca aaacgctttg agtttgaacg accaaataac
     8761 ataacagcaa aagaaaagga ataacaatgg caggcaacag catcggacaa ttatttaaag
     8821 tgaccacttt cggcgaatct cacggtattg cattaggctg tatcgtagat ggcgtaccgc
     8881 cgaatatggc tttaagcgaa gcagatttac agccggattt agaccgccgt aaacccggta
     8941 cttcacgcta caccacgcct cgccgtgaag atgatgaagt gcaaatttta tcgggcgtct
     9001 ttgaaggcaa aacgacggga acaagcattg gtttaatcat taaaaacggt gaccaacgct
     9061 cacaagacta tggcgacatt gccgaaaaat tccgcccggg gcacgcagat tatacctatc
     9121 agcaaaaata cggcattcga gattaccgtg gcggtgggcg ttcttctgct cgggaaaccg
     9181 caatgcgggt tgccgccggg gcgattgcca aaaaatattt gcgtgagcaa tttggcattg
     9241 aagtgcgagg ctacctctca caaatcggca atatcaaaat tgacccgaaa accgttgaaa
     9301 atattgaaca aattgattgg cacgcagtca atagtaatcc tttcttctgc cccgatcccg
     9361 ttgcgattga aggctttgat gccttaattc gtgagctgaa aaaagatggc gattcggtgg
     9421 gggcaaaatt aaccgtgatt gcagagcgtg tacctgtagg gttaggcgaa cctgtgtttg
     9481 accgcctaga tgccgacctt gcccacgcct taatgtcgat caacgccgtg aaagcggtgg
     9541 aaattggcga tggttttgca gttgtggaac aacgtggtag ccagcaccga gatgagatga
     9601 cgccgcaagg ctttctctct aatcacgccg gcggaatttt aggtggtatt agctccggtc
     9661 agccgattat cgctcatatt gcgttaaagc cgacctcaag cattactatt cccggcagaa
     9721 gcgtgaacaa aaacaacgaa gccgttgaag tgatcaccaa aggcagacac gacccctgtg
     9781 taggtattcg tgctgtgccg attgcagaag cgatgatggc gattgtacta ctcgaccatc
     9841 tgttaagatt taaggctcaa tgccgttaaa cacataaaat tggaaaaatg aaattattaa
     9901 aaacactttt agtctcaagc cttgctttta cagctaccgc actgaatgca acgcaatggg
     9961 agaaaatcaa aactccggtt caaggaaaag cacaatctat cggcggttat agtaacggct
    10021 gtattattgg ggcacagccc cttgcattaa aaggcgaagg ctaccaagtg atccgctcgg
    10081 ctcgtaaccg ctattacgga cacccacaac tgctcgatta tctcacttac ttaggcaaaa
    10141 aaaccaaagc tgccggtgtg ccaaccattt taatcggcga tatgggaatg cctgccggtg
    10201 ggcgttttgc ctccggtcac gcctcccatc aaaccgggct ggatgctgat atttggttta
    10261 agttcggacc gatggacgat gaaaccgccc gcaatccagc agggcttgcc accattatgg
    10321 taaaccgtag taccgagcgg gttgatgatt cactctggaa tcaacaccat actaatttag
    10381 taaaacttgc tgcaaccgat cctcgagtgg atcgcatttt tgtcaatcct gccattaaag
    10441 tgaaactctg ccaaaccgca ggcaatgatc gtgcttggtt acgcaaaatt cgcccgtggt
    10501 acggacacga ctcccatttc cacgtccgtt taacctgccc ggctgatgcc gcaagttgtg
    10561 aaaatcaagc ccctgtgcct gccggtgacg gctgtggtga agagctttac tcgtggtttg
    10621 agccgaaaga agcctccggc acaccaaaag ccaaagtgct acccacagcg cctgttcaat
    10681 gtcagatgat tttatctgaa caaggcttga attaattgca aaataacaac cttttttgac
    10741 cgcttgtcag cccacaagcg gttcattttc ttaaataatt tacgattatg cgtttatttg
    10801 ttgccgaaaa acccagcctt gcccgagcga ttgccgatgt gttaccaaaa ccccatacca
    10861 aaggagatgg ctttatccaa tgcggcgaac acgacactgt tacttggtgt atcggtcatt
    10921 tattggaaca ggctgaaccc gatgtctatg atgagcgttt caaaatgtgg cgaatggaac
    10981 atttgccgat tgtgcctgaa caatggaaat tgattcccaa aaaagagacg ctcaagcagt
    11041 ttaaagtggt ggaaaagctg attaaaaaag ccgatgtttt agtcaatgcc ggagacccgg
    11101 atcgagaagg gcagctgttg gtggacgaag tttttggcta tttgaattta tctgctgaac
    11161 gcaaaagcca aattcagcgt tgtttggtaa gcgatctcaa cccgaatgtg gtgagccgag
    11221 ccattgaaaa attgcaaaaa aacagcgatt ttataccgct tgcaacctct gctctcgccc
    11281 gagccagagc ggattggctg tatggtatca atatgacccg agcctatacc ctacaggggc
    11341 gttgggcagg ctataaaggc gtgttatcag tcggacgtgt gcaaacgccg gtattagggc
    11401 tgattgttcg ccgagatctg gagatcgagc atttcgtgcc aaaggattat tttgaggtgt
    11461 tggcacagat tgtcgtgccg gaaacccaag agcgatttaa ggcgcagtgg caaccgagta
    11521 aagcctgtga agattatcaa gatgaagatg ggcgggtgct gtctcgtcca ttggcagaaa
    11581 atgtggtaaa acggattacc gaccagccgg caaccgtcac cgaatatcaa aataaaattg
    11641 aaaaagaaac tgcaccgctg ccttattctc tttcggtatt acaaatggaa gccgccggca
    11701 gatatgggct atccgcccaa gcggtgttgg atatttgcca aaagctgtat gaaacccata
    11761 aactaattac ctaccctcgt tctgataatc ggtatttgcc gaccgaacat ttcaacgaca
    11821 gatttaaagt gatggcggcg attgctcatc atttacctga atatcaacaa aaaccggaag
    11881 tgattgatgc cactattcgc aatcgttgct ggaatgataa agaggtggaa gcccaccacg
    11941 ccattattcc cactgcacgg caagggacgg tacatttaac cgaaaatgaa aaaagagttt
    12001 atcaactcat tgcccgccaa tatctaatgc aattctgccc tgatgcggaa tatcgcaaaa
    12061 gtaaaatcgg gcttgaaatt gcaggtggta gttttgtcgc tcaagcacgc aaccttgtaa
    12121 ttgccggctg gcgagcgtta ctgggtaaag aagatagcct tgacgatgca gagccactac
    12181 taccgattgt caaaaaaggg caaatcctcc attgtgaaaa aggggaaatt gtcagcaaaa
    12241 aaacacaacc gccccgccac tttactgatc gcagtttgct ttcagcaatg accgggatcg
    12301 cccgttttgt acaagataaa gaattgaaaa aaatcttgcg tgaaaccgat ggtttaggca
    12361 cggaggcaac ccgagccggt attatcgaat tgctgtttaa acgtggtttt ttaatccgta
    12421 aagggaaaaa tatccacagt accgaagccg gcagaatatt gattcaagca cttcccgact
    12481 ctgctaccca gccggatatg accgctcatt gggaaatgca gctgaatcaa atcagcaaaa
    12541 aagagaccag ctatcagcaa tttatgtttg atctaaacca acagctccca catttattac
    12601 aaagcccaaa ccgccaagtg ttgcaaaatt tagcgaaaat cacaccgctt gcaagcggca
    12661 ataaacctcg ttattttaaa aagcgaacac aaactgctga aaattaaatc aagcaggtaa
    12721 aaattactgt ttagcacttg tcaaacgggc gtaaattcta tattatgcac gccattgcaa
    12781 atttcgcata aagaatacaa gagaataaat taatgttaat taatgtactc actattgttt
    12841 atcttgtagt tgccgtatta ctgatcgcat ttgtattaat gcaacaaggt aaaggcgctg
    12901 atgcaggtgc ttctttcggg gcgggtgctt cagcaacagt tttcggctca gcaggatcag
    12961 caaatttttt atcaagaaca actgctctac ttgcaacgat tttcttcgca attagtttag
    13021 ttatcggtaa tttaagctca cacaatgtag caccgaaaag ccaatttgaa gacttaagcc
    13081 aatttgaaga cttaagccaa tttgaagact taagccaatt tgaagactta agccaatttg
    13141 aagacttaag ccaagttgaa caaaagcaag tagaacctgt aaaaatagaa aatagcgata
    13201 tccctcaata atcgcttaac attaaaaaga ataaagctct ggtggtggaa ttggtagaca
    13261 cgccatcttg agggggtggt ggacacagtc cgtgcgagtt caagtctcgc ccagagcacc
    13321 aaattaaaga cctatagagt tctataggta ccttaaaagc cttgaaaatc aatacttcaa
    13381 ggctttttta ttgtcctatg catacctatc gagtacaatc aaatccgaag attttagtta
    13441 tacgtttagt tatacggtat agcaaatcta aaaagtcgta taactaaaac ttaatagcgt
    13501 ataactaacg caaggggaaa agatggcacg ttcaactaca ccattaaata gcactcaaat
    13561 tgataaagcc aagccaaaag aaaaagaata taccctagcc gacggcaaag ggctttatct
    13621 gcttgtcaaa cccaacggga ctaagttgtg gcggtttaat tattacaaac catacactaa
    13681 ccctaaaaaa caggctttaa tcagcatagg cagttacccc gatgtttctt tacagcaagc
    13741 aaggcaaact aaagatgaat ataatgctct tcttgctcaa aatatcgatc cgcaagccca
    13801 ccgtatagaa accaccatca cagaacaaaa ccgtttagta aacaccttcg cttatgtggc
    13861 ggagcaatgg aaggcaagca aagaggacgt tataaaaccg ctaacactct ctaagaactg
    13921 gcggattgct gaaatatact tactccccca cttaaaagac ttgccgatag ataaaattat
    13981 accggcagta gtgaagcctg ttttagatat tccctacaaa gcaaataaag ctaaaatgtt
    14041 cagaaagtcg atgaggttac ttaatgaaat tttagactac cgtaaatagc ttattcatca
    14101 ttccgctaaa tccttgtagc aatatcaaaa aagcatttga agcaaaacca agaggggaat
    14161 ttgcttatat tccttttgag gaattgcccg aattttgcga acggttacaa aactctaatt
    14221 tagagttact tactcgatac ttaatacaat ggcaacttct tactatgatc agagcaaatg
    14281 aagcagttac agctgaatat acagatattg acgaagaaaa gaggctttgg gttatcccac
    14341 cccaaaaaat gaaacagaaa cacggaggca agccgcatat agtaccatta tcaaaacagg
    14401 cttattcgct actacagaaa atcaaaacgc ttgccaatgg caacggctat ttattcccaa
    14461 gtgtaagaac gaaaacaggc agaatgaacc cgcaaaccgt taataaagcg atcagaaagt
    14521 ctttaggata tagcaaagaa gcactgaccg ctcacggctt acgcaaaact acaagcagtt
    14581 atctacacga aaaaggcata ttgcctgacg tggtagagct gtgtttatct cacactatag
    14641 gcggattacg gggcgtttat aacaaggcta aatatttacc acaaaggcgg gaagctatgc
    14701 agttatgggg agattatgtt gctcaatgta tggcaaaaag cggagtaagt cacttaaaac
    14761 tagtcgcctg gtaaattttc cgccaaaaat gaccgcttgt aatgccgtta ggttatcgcc
    14821 tgacggcttt tttatcgcca gcaattcccc ttgatgaaaa ttctgtaaac ttttcgattt
    14881 ttacccactt tacccacttt tcactattat ttttttataa ctaactgaaa aataaagaaa
    14941 aaatgacagt gggtaaacag tgggtaagca gtgggtaaag tgggttaaaa gtgggtaaaa
    15001 gtagcttact tgcc
//
LOCUS       DANLUT010000047        14707 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLUT010000047 DANLUT010000000
VERSION     DANLUT010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14707
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..466)
                     /gene="sixA"
                     /locus_tag="PXB38_001132"
     CDS             complement(<1..466)
                     /gene="sixA"
                     /locus_tag="PXB38_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL5353461.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAE"
     gene            593..2032
                     /gene="pyk"
                     /locus_tag="PXB38_001133"
     CDS             593..2032
                     /gene="pyk"
                     /locus_tag="PXB38_001133"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5353462.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGVP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEDVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            2128..3165
                     /locus_tag="PXB38_001134"
     CDS             2128..3165
                     /locus_tag="PXB38_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5353463.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGVMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            3205..4263
                     /locus_tag="PXB38_001135"
     CDS             3205..4263
                     /locus_tag="PXB38_001135"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL5353464.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            4318..5439
                     /gene="tyrA"
                     /locus_tag="PXB38_001136"
     CDS             4318..5439
                     /gene="tyrA"
                     /locus_tag="PXB38_001136"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL5353465.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(5630..6715)
                     /gene="recF"
                     /locus_tag="PXB38_001137"
     CDS             complement(5630..6715)
                     /gene="recF"
                     /locus_tag="PXB38_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL5353466.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            6855..7184
                     /locus_tag="PXB38_001138"
     CDS             6855..7184
                     /locus_tag="PXB38_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL5353467.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            7192..7797
                     /gene="recR"
                     /locus_tag="PXB38_001139"
     CDS             7192..7797
                     /gene="recR"
                     /locus_tag="PXB38_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL5353468.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            7869..8195
                     /gene="grxD"
                     /locus_tag="PXB38_001140"
     CDS             7869..8195
                     /gene="grxD"
                     /locus_tag="PXB38_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL5353469.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            8337..9374
                     /locus_tag="PXB38_001141"
     CDS             8337..9374
                     /locus_tag="PXB38_001141"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL5353470.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            9401..9949
                     /locus_tag="PXB38_001142"
     CDS             9401..9949
                     /locus_tag="PXB38_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL5353471.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            9958..10302
                     /locus_tag="PXB38_001143"
     CDS             9958..10302
                     /locus_tag="PXB38_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5353472.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(10335..12113)
                     /locus_tag="PXB38_001144"
     CDS             complement(10335..12113)
                     /locus_tag="PXB38_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL5353473.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLTNGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQIRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(12339..12908)
                     /locus_tag="PXB38_001145"
     CDS             complement(12339..12908)
                     /locus_tag="PXB38_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL5353474.1"
                     /translation="MNQENHKIEDIIRIFNQCFANEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            complement(12918..14681)
                     /locus_tag="PXB38_001146"
     CDS             complement(12918..14681)
                     /locus_tag="PXB38_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL5353475.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIAVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
BASE COUNT         4413 a         2842 c         3189 g         4263 t
ORIGIN      
        1 gctcagcttt tgtctttacc caattaattt ctgctatggt tgaagttgga aattgtacat
       61 tgctttggtt attcgttaaa atttggacga gatcgaacac aagtgggaga tgtgaaatca
      121 gaagaatatt ttttgcgcct tcctctctta aaaaatgtag atagctttct actgtatgcg
      181 ggtttccgtc aggcgtaacc tcgtcccaac tttcaatgag gttggtaaaa tgttggggaa
      241 aattgaccgc ttgcatacca ataagcacat tttcaagcgt ttgttgcgcc ctaaggtatg
      301 ggctgacgag aattttatct aattgaattt gttggttggc taaatgttct cctaaccatt
      361 ttccctgtga aatggtgttt tttataccat tgtcggttaa acagcgagca gcatcactcg
      421 aagcattaaa gcctgcttcc ccatggcgca taatccaaat attcataaca ttctccttta
      481 gttgtattta aactctcttg atttaggcgt ataatgaccc tcgtttaacg cataatcaag
      541 atgcttagaa agattttaac ttaattttta aatttattga tggagtcaaa taatgtctag
      601 aaaactcaga agaacgaaga tcgtttgtac aatgggccct gctaccgacc gtggcaatac
      661 tttagaaaaa atcattgctg ccggtgcaaa tatggttcgt atgaacttct cccacggtgt
      721 tcctgaagat cacattgaac gtgcgaataa agtgcgtgaa attgctgcaa gattaggtcg
      781 tcatgttgcg attttgggtg atttacaagg tcctaaaatt cgtgtttcga catttaaaga
      841 cggtaaaatt ttcttaaata ttggtgataa attcacttta gacgcagatt taccgcgtgg
      901 agaaggccat caagaagctg taggtttaga ttacaaaaac ttaccaaatg atgtagtacc
      961 tggtgatatt ctattgttag atgacggtaa tgttcaactg aaagtgttgg aagtggaaga
     1021 cgttaaagtc catactgaag tgacagttgg tggcccgtta tcaaacaata aagggattaa
     1081 caaattaggt ggtggtttat cagctcctgc attaaccgac aaagataaag aagacattaa
     1141 attagcggcg aaaatcggtg tggattacct agcggtttca ttccctcaat caagtgcaga
     1201 tttacattat gcacgtgaat tagcaaaaga agcaggctta gaagcgaaaa ttgtagcgaa
     1261 ggttgaacgt gccgaaactg ttgcgactga agaagcaatg gacgacatca ttttaggtgc
     1321 ggacgttgtg atggttgctc gtggtgactt aggggttgaa attggtgatg cggctttagt
     1381 gggtgtgcaa aaacgtttaa tccgccgtgc tcgtaagcta aatcgtgtgg taattaccgc
     1441 aacccaaatg atggaatcga tgattaaaaa accaatgccg acccgtgctg aagtgatgga
     1501 tgttgcaaat gctgtgttag atggtactga tgcggtaatg ctttccggcg aaactgcaaa
     1561 cggtgactac cctgttgaaa cggtaaaatc aatggcagaa gtgtgcttag gtgctgaaac
     1621 aatgccaagc attaacattt ctcgccaccg tatggaaggt acgtttaaat ctatcgaaga
     1681 agctgtggca atgtctgcaa tgtacaccgc aaaccattta gaaggtgtat cggcaattat
     1741 ttcattaact cattcaggcg aaacggctaa attaaccagc cgtatcagct caggtttacc
     1801 gatttatgcg atgtctcgta accaaaaagc attaaacctt tgtgcgttat atcgtggtgt
     1861 aacaccggta tattacaatg aagacagccg cacaatggaa ggggcgaaaa aagccattgc
     1921 tcaattaaaa gaacaaggct atttattaac cggcgaatta gtgcttttaa ctcacggaga
     1981 tgaattaaaa gctggcggta caaatacttg tcgtatctta agagttgaat aatctaaacg
     2041 attaacgcaa aagccacata aaacacttta tgtggctttt tttctgtctt aatatagctt
     2101 aatgtaatct gaactattga tattattatg cacaataaac ttctttctat ctgtattctc
     2161 cgcctttctg ccattggcga cgtttgccat accttagcgg ttattcaagc tattcaacga
     2221 aaatatccta gtgctgaaat tacttggatt atcggcaaaa cggaagcgta tttaatgaaa
     2281 gatattccga atgttcactt aattccttat gataaaaaaa tagggtggaa aggtatcttt
     2341 acactttggc aaaaactttc tcacaagcgg tttgattttt tattaaattt acaaacggca
     2401 ttccgagctt caattctatc gcttgggatt aaagcaaaga aaaaaatcgg ctttaatcaa
     2461 gacagagcaa gggaaatgca atggttgttt accaaccaga aagtagaaat gacagactct
     2521 cctcacgtgc ttgacgggca aatgatgttt gccaaagcca ttggggtaat ggatttatcg
     2581 gcacaatgga atttacctgt gagtgatgaa gatttagctt atggcaaaca atttattgat
     2641 tttacaagga aaaatatact cattgctcct tgttcaagca agaaagagaa agattggttg
     2701 ccggaacgct atgcagaaat tgctaactgg ctaagtaagc aaaatatcaa tgtattaatt
     2761 gcaggttctc catcgcaata tgaaatggaa accgcagcca aaattcaaca acttgccccg
     2821 aattgtacga gtattgccgg taaaaccacg ctaaaacagc ttgcaggtgt tattcgtcag
     2881 gttgatttgg tgatctcttc agattcaggt cctgcccata tcgccactac gcaaaatacg
     2941 ccggtgattg ggttgtatgc gattcataat ccaagacgga caggccctta caatgactta
     3001 gacaaagtgg tttcggtata tgatgaagcg attttgcaat cttatggtaa accttggcag
     3061 caattagctt gggcaactaa agctaaaggc aaaaattgga tggaaaaaat cacggtggag
     3121 agtgtgaaac aaaaagtagt tgaaacttta aaaattacgt tgtaaagttt gtgtattaaa
     3181 agatttacac aaaaggaaat taaaatgaac acagtgttta atcaagatag cgtgcataac
     3241 gtaaatatcc aagatgaaaa ggtattactg accccacaag agttaaaaca agaatttccg
     3301 ttgccggaac atttacgcaa tcaaattgaa cgttcacgca aaacgatttc cgatattatt
     3361 cacagacgag ataaacgcca actgattgtg attggacctt gttcgattca cgacccagtt
     3421 gctgcccttg aatatggtaa aaaattaaaa gctctttcgg agcaagtgag tgataagttg
     3481 tatattgtga tgcgggttta ttttgaaaag ccccgcacta ctgtaggttg gaaagggctg
     3541 attaacgatc cgaaaatgga cggctctttt gatgtcgaaa ccggcttacg tatcgcacga
     3601 aaactctgtt tggatttagc cgaacttggc ttgccgttag cgaccgaagc cttagatccg
     3661 atgacaccac aatatttagc ggatttgttc agctggtcgg caattggagc aagaacaact
     3721 gagtctcaaa ctcaccgtga attagcctca ggtttgtcaa tggcggtagg ctttaaaaat
     3781 ggtacagatg gtgatttagc cgttgcactt aatgcgatgc aatcttccgc tcaaagccat
     3841 agctttatcg gcattaacca acaggggcaa gttactttac tcaaaacaaa aggtaatgca
     3901 gacggacata ttattttacg tggcggtaaa accccaaatt atgaaaagca atatgttgat
     3961 gattgtgaat gggtgctaaa acaagcaaac ttacctacag cgattatgat tgattgcagc
     4021 cacggcaatt ccaataaaga ttaccgccgc caaccgctgg tggcagaaaa tgtattagag
     4081 cagctacttg ctggcaatac ttcgattatc ggtttaatga ttgaaagcaa tttacacgca
     4141 ggtaatcaat catcagaatt gccgttcgag cagatgaaat acggtgtttc tattacggat
     4201 gcttgtattg actggcaaac tacagaagag cttttaactc actttgctga aaagttgcgt
     4261 taaagataat ttgcaaaaaa ttgcataaaa acgaccgctt gtaaattggt aacaaatatg
     4321 aacccattag ccccattacg agaacaaatt gatcaagttg atcaacaact tatcgcctta
     4381 ctttctgaac gcttagctct tgtggcagaa gttgggaaag tcaaatcaga acacggcatt
     4441 cctgtttatg ctccggagcg agaaaccgca atgatttccg cccgccgctc tgaagcggaa
     4501 aaacaaggta ttccggcgga tctcattgaa gatgtgctac gccgtataat gcgtgaatct
     4561 tatgccaatg aaaacaaaca cggcttcaaa agagttaatt cggacattca aaaaatcgtg
     4621 attgttggtg gtaaagggaa attaggtggg ctgtttggca attatttaac cctatccggc
     4681 tataatgttg aggcattagg acgtgatgat tgggacaatg ccgagcagat tttagccaat
     4741 gcagatgtgg ttattgtgtg tgtgccgatt gccaacaccc tagcaaccat cgagcgttta
     4801 caatcttatt taaccgaaaa tatgattttg gcggatttaa cctccgtcaa acatcagccg
     4861 ttgcaaaaaa tgctggaagt gcataatgga gcggtagtcg gtttacaccc gatgttcgga
     4921 ccggatattg caagtcaggc aaagcaagtg gtcgcttgct gccacgggcg tttccctgaa
     4981 cgttatcaat ggttgcttga gcaaatcaaa atttgggggg caaaaattga agagattgag
     5041 gcagcagcac acgataatgc aatgacctac attcaagccc tacgccactt ttccactttt
     5101 gcattcgggc tacatctttc tcgccagccg gtgcaactct ctcaattatt ggcactatct
     5161 tcgccgattt accgcttaga gttggcaatg attgggcgtt tatttgccca agacggcagc
     5221 ttatatgccg atattattgc cgataaaccg gaaaatttag ccaccatcga aaccttaaaa
     5281 gagagttttg aacaagggct agatttcttt aaacgcaacg acaaagccgg ttttatcaag
     5341 gcttttgagg aagtgcatca ctggtttggc gattattccg agcagttctt gaaagagagt
     5401 agagtattgc tccaacaggc tcacgattca agaaagtaaa ggtaggttga ggttttgctc
     5461 tgatagcact agcgtccacg ctagtgctat ttaatattct acaagcggtt aataaagagc
     5521 tgttttttgc aaatttttat gcaaaattat ccgcttgttt tggcacgagc gtggacgctc
     5581 gcgccatcgg aagaaacatt tttgtaaaat tgcccccaaa tctgaccgct tactgtggct
     5641 gaatttctcc attttttacc gtaaacaaac aatcatcgct tctgtcttgc cattgcattt
     5701 gattgagctg atcttgagta atggcggtaa cgaatacttg tgagccactt tctcttaaac
     5761 gatgtgctaa aagctcacgt ttggttgggt cgagttcgga ggcaaaatcg tcaattaaaa
     5821 ataggcattg gcgttgtttt tgggcgacca aatgttcgcc ttgagccagt cttaacgcac
     5881 acatcaatag ctttaattgc ccacgggaaa gcacatcttc caccggtaag ccgttcgctt
     5941 taaaacggaa atcggctttt tgagctccaa tcatcgtata gccaagagct ttatcccgct
     6001 caaaaccttg tgccagaatc tcggcataat ccgccccttt ttcccagcct tgatgaaagc
     6061 tcaagccgat ttcgatttcc ggcaggaaaa attggcaggt tttctcaatt tcggggcgta
     6121 acgcttcggc gtattcggct cgcatttcgc tcacggcata agtggttttc accaattcga
     6181 tatcccacgc tttgagttct tgataagagc ggacttgttg caaagccgaa ttacgttgct
     6241 ttaataaacg gcgaagattg ttccaatgag cgtagaaatc agggtgctgg tgaaataagc
     6301 cccagtccaa aaaagcacgg cgaaagctcg gaccaccgtt aagtaaggtt aagccttcgg
     6361 gggtgatcac ttgcatcggc aataaatggg ctaaatcggc aattttgttg ccgtcttcac
     6421 cgttgatttt aagtgtcgtc tcgccactgc gaaatttctg aatgccgacc gaccaactgt
     6481 gctttgcctc gtcaatttta ccgtgtagta cgaaatcgtc tttatcgtaa tggataatgc
     6541 ggttgctgat atggcttttg aatgaacgcc cgtgtccaag atagaaaatt gattccaaca
     6601 aactggtttt gccacttccg ttcgccccga ctaaaaaatt aaaatgcggg ctaaatgcta
     6661 aatcggtatg ttggatattt ctaaaatggt tgattaataa acgggttaaa gccatagtta
     6721 aagtgcgagg aataaaaaga gtagccattt tagcaaattt gcaaaatttt gggaaaaatt
     6781 aaccgcttgc ggattagaaa gtggttcagt agaataagcc gtttattttt tattgaaaat
     6841 taagaggaaa aattatgttt ggaaaaggtg gcttaggcgg cttaatgaaa caggctcagc
     6901 aaatgcaaga gcgtatgcaa aaaatgcaag aagagatcgc ccaattagaa gtaacaggcg
     6961 agtctggtgc gggtttggta aaagtcacta ttaacggggc tcacaattgc cgccgaattg
     7021 aaattgatcc atcattaatg gaagatgata aagagatggt ggaagattta gttgccgctg
     7081 cctttaacga tgcggttcgc cgtgcagaag aaatgcaaaa agagaaaatg gcaagtgtga
     7141 ctgccggtat gcaactgccg ccgggtatga aattcccatt ctaatttaag tatgcaaacc
     7201 agtcctttac ttgaaaattt gatggaagcc ttgcgtgcat tgcccggtgt cggaccgaaa
     7261 tcggcacagc gaatggctta ccatctgttg caacgtaatc gttccggcgg tgtggcgttg
     7321 tcaaaagcct taaatgaggc aatgagccat atcggacatt gcaaatcgtg ccgtactttt
     7381 accgaagagg aagagtgtac gatttgtaaa aatcctcgcc gtcagatgag cgggcaactt
     7441 tgtgtggtag aaatgccgga agacattcaa gcgattgagc aaaccgggca attttcaggg
     7501 cgttattttg tgctgatggg gcatttgtcg ccgattgatg gtataggccc tcgtgaaatc
     7561 ggcttagatt tattgcaaca acgcttggaa caggaatctt tccacgaagt gattttggcg
     7621 actaatccga ccattgaagg tgatgctacc gcaaattaca ttgctgaaat gtgcagaatg
     7681 tataacgtga aagctactcg tattgctcac ggtgtgccgg tcggtggttc attagaaatg
     7741 gttgatggca caacgctttc tcactctttt gcaggacggc gtgatattga tatttaaagc
     7801 tatttctgtg ctaacttaat tctgatataa ttactcaact attttaaatt attattttga
     7861 ggctaaaaat ggaaactatt gacaaaatca aacaacaaat cagcgaaaac ccgattctac
     7921 tttatatgaa aggttcaccg aaattcccat cttgtggttt ctccgctcgt gcggtggaag
     7981 cggtaattaa ctgccaagtg cctttcggtt atgtggatat tttaaccaat ccggatattc
     8041 gtgcggaatt gccaaaattt gcaaactggc cgactttccc acaattatgg gtagaaggtg
     8101 aattagttgg cggttgtgac atcgtattag aaatgctcca aaaaggcgaa cttcaaacct
     8161 tattaaaaga aaccgcagca aaacacgcag cataatttca aaccagtatg ttaaggctct
     8221 tatgtttaag agccttaatt ttttcttgcg atttaggctt aaacttctta cctcaagagc
     8281 tattttgttt tagaatgtca aaattatttc gtaacataaa aataaaagga cacaacatgg
     8341 cattaaaaga gttagattgg gcaaatttag gcttttctta tatcaaaacc gattaccgtt
     8401 tcattgcaca ttggaaagac ggaaaatgga atgaaggcga attaactcaa gacaatacac
     8461 tgcatattca cgaaggctca actgccctgc actatgggca acaatgtttt gaggggttaa
     8521 aagcctatcg ctgtaaagat ggctcaatta acttattccg cccggatcaa aatgccgagc
     8581 gtatgcaacg caccgcagat cgtttattaa tgccacgtgt gccaaccgag ctgtttattc
     8641 gtgcctgtaa aaaagtggta aaagccaatc aagattggtt agggccttac ggttcggggg
     8701 caacccttta tttacgtccg tttttaatcg gcgtgggcga aaatattggg gtgaaagctg
     8761 cacctgaatt tattttttcc gtattctgct gtccggtggg ggcatatttc aaaggtggct
     8821 tagcaccctc aaacttcatt acaaccgact atgaccgtgc agccccaatg ggaacaggtg
     8881 gtgtgaaagt aggcggtaac tacgctgcga gtttattacc gcacgaattg gcggttgagc
     8941 aaagttcaac tacccgtaaa tttgccgatg cgatttattt agatccgaaa acccatacca
     9001 aaattgaaga agtgggggcg gcgaacttct ttgggattac caaagacaac aaattcatca
     9061 ccccgatttc agagtcgatt ttgccaagta ttaccaaata ctcattgcta caccttgctc
     9121 aagagcgttt aggtatggaa gcgattgagg gagatgtgta tatcgaccag ttagaccaat
     9181 ttgccgaagc cggtgcttgt ggtacggctg cggtgattac gccggttggt ggtattcaac
     9241 ataaagacaa attccacgtc ttctattcag aaaccgaagt ggggcctgtc acccgccgtt
     9301 tatacgcaga attaaccggt attcaatttg gcgatgttga agcaccgcaa ggctggattg
     9361 taaaagtaga gtaattttac acaagtaaca agcggtcgaa ttggcaaaac tttttgcaaa
     9421 ttcaaccgct tgtctttatt tagagaatat gaaaaagtta atttttttag gtttatcagc
     9481 acttgcatta gctggttgtt cctcaacaat ttctaatcct aatcaactga ttgggcaatg
     9541 gcaatgcact attgagtacg atgattttaa tattcgtacg gtggataatt tacgattttc
     9601 cacaaatggg actatgacca atcaaggtgg tatatattac cctattcaaa agtcgatttt
     9661 tgagtattca ttacaacaga atgggcgctg gagtgtgaaa aacggggcta ttgtttatcg
     9721 tatcgtctca gaatctgtac agcgtagcca tcgttcacaa atatggtctg aattacaacg
     9781 tgatgcggag ctacaacaat ttgaagagaa tttatttagc tcactttctg atagtgataa
     9841 taataaaaca gtggaactaa tcatcactga ttttgatgaa aaagaaatgg atatcaagca
     9901 agaaataaaa gggcataaag cttataaagg gcaatgtata aaacagtaga ggtaaaaatg
     9961 attcaacgtt ttgaagtagg tagccgtttt tcggaaatgg caatacataa cggtgtggct
    10021 tacttggcag ggcaagtgcc gttagatgac accgccgatg cttacaccca aacccagcaa
    10081 gtgcttgcag aaattgataa atggctggca aaagccaaca gcgataaaag taaaattcta
    10141 atggctacgg tttatttaaa agagatggca gattatgcgg aaatgaaccg tgcgtgggac
    10201 gaatgggttg ccccaaataa cgctccacca agagcggcgg tggaggctaa attagccaat
    10261 ccaaattgga aagtcgaaat tgtggttacc gctgcggtat aaatgaaaag cagaaagacg
    10321 atctctgttt ttcattatga ttcgtacatt ttttcgattt gttgcttata gcgttctaga
    10381 atgacctttc gtcttaattt taatgtaggc gtaatttctt ccattttggt gctaaatgct
    10441 tgcgaaagta gtgtaaactt tttgatctgt tcaaaacttg caaggtcttt ttgtaattcg
    10501 ttaatgcgtt gttcaaacat tctgacaacc tcataatgtt taatgagttc taatctgtct
    10561 tgatagcgaa tattgagctt ttttgcatac tcttcgaggc tatcaaagca aggaactatc
    10621 aacgcagaaa catatttttt ggcatcagca atcaccgcaa tttgctcaat aaacttatct
    10681 ttacctattt ttccttcaat gtattgtggg gcaatatatt taccgtttga agttttcatt
    10741 aattctttaa tacgatcggt aatataaaga ttgccttccg aatccagttc accggcatct
    10801 cccgttttta gaaaaccttc agcagtaaag gcttgagcag tggcttccgg ttttttgtag
    10861 taacctttca taaccaagcc tccacgcact aaaatttcat tttcttcact aattttgacc
    10921 tcaacatcag gcattaaggt accggttgag ttgatattaa agcctttttc ctgccagcat
    10981 gaaatagtgg cagtagtttc ggtcattccg tatccaagtt ttacattgat gcctatactt
    11041 tggaaaaata gcccgataga cggatctaat ttagctcctc cacacggcat catacgaata
    11101 cgaccgccta gtaaggctcg taattttcct agcaccaatt tatctgccat aatgtactgc
    11161 aagcggtgga aaaaggctga ttttttacca aacagattgt cttcggcggt acggattgcc
    11221 catttaaata acgctcggcg atgtatcggt gcttgttgga ctttatccca caccgcagta
    11281 tagatttttt catagaacct tggtacggca cacattaatg taggtcgtac cgttgagagt
    11341 gcttgacgta tctgttgagg atcttccaga tagcaattta ctgcccctct gtatagcaca
    11401 taagtgaccc aagcacgttc aaagatatgc gataaaggta aaaatgaaag ggatatatca
    11461 ttttcgtcaa tatgagggag tgctttatta tgtgcctgaa gttgatgagc taaattagca
    11521 taatctaaca taacaccttt aggctcaccg gttgttcccg aggtataaat taaagtgaat
    11581 aaatcctcta agcatttatc atttaaacgt ttggttaatt cagcttcatc ttgattaacc
    11641 ttaatgaaat cttgccaatg ttgagcgata gggaaatcac gcagatctat tgagtctttc
    11701 atcgcgacaa tttttattaa tagcgaacag ttgttcgcta tttctatggc ttgatcatat
    11761 tgttcctgat cgccaacaaa gaggattttt atatccccgt cattcaggat atattcaagt
    11821 tgtttggtgg tactggttgc ataaatcggc actgctaccg cacgaatttg cattgcagca
    11881 atatcggtaa ttgtccaacg aggcatattt tgtgcaaaaa tagcgatttt ctcttgaacg
    11941 gcaagaccgt ttgtcagcaa ggcataagaa agattattga cctgtttttg taattctaac
    12001 caacttattt ctgaccattt ttcatcttgc ataaaacgta aagctgggtg gtggctaaga
    12061 gcctgaactt gctggtggaa acggtggata aagtgaaaat ctaaagtgct cataatctta
    12121 tttttacttt ctatttcagt gaacagttgt acgctaatat aatagaaaat atgaaaaaaa
    12181 gaaacagttg tactctgaaa caaagggttt tggataggaa gtaatcaagg caatagaaat
    12241 agataagtag ggtatcgttt agtacaaatg caatattttt caaaaatgag accgcttgta
    12301 tatgcaacaa gcggtctgtt ttgttaaaaa ttttgcaact aaattcgttc aatatcaaat
    12361 tgagctaaat caatcacatc aggtgtaccg taaaaagcac agagggcttt acgcaaggtt
    12421 tcagctcgtt tgggaaggta gccacgttct gcatagagct tgacttggtc gtacactgct
    12481 tgtttaaagg ctgaattatc gccgggattg cccgagagat tgtcggcact agcaaaataa
    12541 cgaaaaccgg cagcagttgc taacacccat tcaatcgctt gcggtttgat ttccgcactt
    12601 tcaaattcac gttggcgttc ggcagagcgt ccgtccggct cgtaccaata gccaaaatct
    12661 tcaagtttac gccgagcttc tccagcaacg agccaatggg caatttcgtg caaggcactg
    12721 ctgtaatagc cgtgagcaaa taaaatcaca ttgtaagggc gttcgctcgg cacaccatct
    12781 tcgtccataa attcgggcaa gtaaatcgga taattacccc cccgctctag gcgagtgtta
    12841 tattcattag caaagcattg attaaaaatg cgaataatgt cttcaatttt atgattttct
    12901 tgattcattt cttttcttta taacttattc agccaagcta aaaattgctc ggcatccaaa
    12961 aagccagtaa cacgagattg gctcatttca ttgccgtttt catcaaaaaa cagaatcgtt
    13021 ggcaaaccta atacattaaa gtgtttcatc agctcgatat tttcagccga gtttttcgtc
    13081 atatcgattt gcaacactac catttcattc agtttgttct gaacattttg gtcactaaag
    13141 gtgtattttt caaactcttt gcaggcgaca caccagtcgg catagagatc gagcatcact
    13201 tttttacctt tggaagcggt caattttgtc tctaaatcgg caagtgattg aattttttct
    13261 aacgctaagt gcggtgtagt ttgctgttga gtggttgagc cgttccaagc taaatctgcc
    13321 caaggtttag cggcaatggc taaagcgagc aataataaga ctttgatgat ctttttcgtg
    13381 attgaattag atggaatcgc atccaccaac cagatcaaaa atgcaaccgc aagggccgac
    13441 cataaaaacg gttcatagtg gcttggcagc acacggctta ataagaacac cggtaaggca
    13501 agcataacaa aaccgaatgc agctttcact tttaacagcc attcgccgga ttttggcaga
    13561 attttgttgc cgaataaggt aatcaaaatc agcggtaagc ccattcccag tgcgagtaga
    13621 tagagggcta agccaccggt gactaaatcg ccactttgtg ccacataaag caacgcaccg
    13681 gaaagtgggg cagaagtaca aggggaagca attaagcctg cgatcatccc cattaaaaac
    13741 acgctaccca acgcaccacc ttgctgtttt tggctcattg cattgagttt ttgttgccag
    13801 ctatttggta gctggatttc gtataagcca aacattgagc aggcaagcag aataaagacg
    13861 atagataaac caatcaacac cggtgggctt tgtaaggcga tttggaaagg caagccgata
    13921 gccgctacaa ttaagccaag taaggtgtaa gtaactgcca ttccttgcac ataggcaata
    13981 cttaacagca atgctttagc ggtagaaggg cgttgcttat ttccaattac aatcgcagag
    14041 agaagtggta gcatcggcag tacgcaagga gtgaatgcta atccaacgcc taatacaaaa
    14101 aaccaaaaaa tggaaaaacg attgttagct aaattttcag ccagttgatc ttgctctgct
    14161 tttgccacat tttcaggggg cgccatattg tcggtttttg caaaattttc gctcttttcg
    14221 accgcttgtg cttccagttg cgccagttct tcaggtgtag cagagagaat actgtctaat
    14281 ttaagctcaa cccgttccgg tggatagcaa aagcctttgg tacacccttg atattccact
    14341 gcgattgagg cgttgtcttt aatttcttta aacggtacct ttagccctaa gtggttgcga
    14401 tagatttcca cctgcccgaa aaattcatcg ttatattgct cggcagcggg aaaagtgatg
    14461 tcgcctatct caatattctg tggcgtgaca cggatttctt ttttataaag ataataattg
    14521 tctgcaatat cccaatttaa ctgtaatgtt tcattttcat tttggattga aaaaacaaag
    14581 gcttcttccg attttaggaa tttgggctga gagaaaagat ttgcgtgaga tgagtttatc
    14641 atcaataaac tcaagacgag tgaaaaaaag tatctaatca tattgaaatc ctatttttaa
    14701 ttgtctc
//
LOCUS       DANLUT010000048        14165 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLUT010000048 DANLUT010000000
VERSION     DANLUT010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14165
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            35..808
                     /locus_tag="PXB38_001147"
     CDS             35..808
                     /locus_tag="PXB38_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5353476.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            891..1607
                     /locus_tag="PXB38_001148"
     CDS             891..1607
                     /locus_tag="PXB38_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL5353477.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            1617..2369
                     /locus_tag="PXB38_001149"
     CDS             1617..2369
                     /locus_tag="PXB38_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL5353478.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRAGK"
     gene            complement(2585..3118)
                     /locus_tag="PXB38_001150"
     CDS             complement(2585..3118)
                     /locus_tag="PXB38_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL5353479.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3224..3565)
                     /locus_tag="PXB38_001151"
     CDS             complement(3224..3565)
                     /locus_tag="PXB38_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL5353480.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(3589..4338)
                     /gene="trmB"
                     /locus_tag="PXB38_001152"
     CDS             complement(3589..4338)
                     /gene="trmB"
                     /locus_tag="PXB38_001152"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL5353481.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPDFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4348..5298)
                     /locus_tag="PXB38_001153"
     CDS             complement(4348..5298)
                     /locus_tag="PXB38_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL5353482.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEEPGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(5444..6463)
                     /gene="hemB"
                     /locus_tag="PXB38_001154"
     CDS             complement(5444..6463)
                     /gene="hemB"
                     /locus_tag="PXB38_001154"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL5353483.1"
                     /translation="MQVIQSQYPLCRMRRLRKHDFSRRLVAENQLTANDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDAKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(6544..7299)
                     /gene="tatC"
                     /locus_tag="PXB38_001155"
     CDS             complement(6544..7299)
                     /gene="tatC"
                     /locus_tag="PXB38_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL5353484.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYIVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7286..7930)
                     /gene="tatB"
                     /locus_tag="PXB38_001156"
     CDS             complement(7286..7930)
                     /gene="tatB"
                     /locus_tag="PXB38_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL5353485.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(7934..8155)
                     /gene="tatA"
                     /locus_tag="PXB38_001157"
     CDS             complement(7934..8155)
                     /gene="tatA"
                     /locus_tag="PXB38_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL5353486.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8266..9903)
                     /gene="ubiB"
                     /locus_tag="PXB38_001158"
     CDS             complement(8266..9903)
                     /gene="ubiB"
                     /locus_tag="PXB38_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL5353487.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(9977..10954)
                     /locus_tag="PXB38_001159"
     CDS             complement(9977..10954)
                     /locus_tag="PXB38_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5353488.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11115..11762)
                     /locus_tag="PXB38_001160"
     CDS             complement(11115..11762)
                     /locus_tag="PXB38_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL5353489.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(11953..12741)
                     /gene="ubiE"
                     /locus_tag="PXB38_001161"
     CDS             complement(11953..12741)
                     /gene="ubiE"
                     /locus_tag="PXB38_001161"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL5353490.1"
                     /translation="MSDVEQLAPKDEVQQSAETTHFGFKTVAKEEKQQLVANVFHSVA
                     GKYDLMNDLLSFGIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEV
                     ILADINSSMLEVGREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDK
                     DKALRSMFRVLKPGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRY
                     LAESIRMHPKQDELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13038..13991
                     /gene="corA"
                     /locus_tag="PXB38_001162"
     CDS             13038..13991
                     /gene="corA"
                     /locus_tag="PXB38_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL5353491.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
     gene            complement(14017..>14165)
                     /locus_tag="PXB38_001163"
     CDS             complement(14017..>14165)
                     /locus_tag="PXB38_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HDL5353492.1"
                     /translation="AKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVK
                     GSLG"
BASE COUNT         4013 a         3177 c         2784 g         4191 t
ORIGIN      
        1 aaaaatttat tttaccaatt aaaaggaaat gattatgttg aaaaaattat caattgctgc
       61 attagctctt accctttctg tttctgcatt tgctaaagag agcctacttg agcgtataaa
      121 caacaaaggg actattactg tgggtacgga aggaacttat gccccttaca cctatcacga
      181 tgcgagcggt aaattaaccg gttacgatgt agaagtaacc cgtgcggtgg ctgaaaaatt
      241 agacgtaaaa gtggaattta aagagacaca atgggacgct atgttagccg gtttaaaagg
      301 tgagcgtttt gacttagtgg caaaccaagt ggctttaacc agcccggaac gtcgagcgac
      361 atttgataaa tccgaatctt acagctggga cggtgccgcc ttattagtgc gtgaagatga
      421 aactaaaatc aaaacccctg ctgatgtaaa aggcgtgaaa actgcccaaa ccttgagctc
      481 aaactatggc gagattgccc gtgaaaacgg tgcagacatc gtgccaattg acggtatggc
      541 tcaaggctta ctgttaattc aacaaaaacg cgccgatgca actttcaata gccacttgtc
      601 gctattagat tacttgaaaa agaacccgaa ttccggctta aaaattgtgt gggaaaaaga
      661 agaaaaagtg ggtgcaggct taattgcgaa taaaggcaat gacgaagcat tagcgaaaat
      721 cagcaaagca atcgtagaat tacgtgaaga cggcacgtta aaaaaattgg gcgagcagtt
      781 cttcggtaaa gatattagtg tacaataatc catattggat taggcttggg gcgaattcgc
      841 cccttttatt tttaaatctc cctcaaaacg ggagatttta ggtttttcag atgttaaacg
      901 atctacttct ctcaatcccc tttatgaccc aagctcgggt cgatttagtg ctaagcggtt
      961 tttggccgat ggtacaagcg gcatttttag tctctattcc gctggcaatc gcctcattta
     1021 ttatcggtat gttaattgcc gttgcagttg cattagtgcg aattagccct gcaacaggct
     1081 tttttcaccg cttgctactg tggctggtaa aaggttatat ctcgattatt cgcggcacgc
     1141 cgatgttggt tcagatctgt attgtgtttt atggtttgcc tgcaatcggc atttttatcg
     1201 atccgattcc ggcggcaatt atcgggtttt cactcaatat cggggcttat ggctcggaaa
     1261 cgatccgtgc tgcgatctcc tccgtgccaa aaggacaatg ggaagccggt tatactatcg
     1321 gtatgactta tatgcaaact tttcgccgta tcattgcccc gcaagcgttt cgagttgctg
     1381 ttccgccact tagcaacacc tttatcggtc tgtttaaaga tacctctctt gcctccgttg
     1441 ttaccgtaac cgaaatgttc cgggttgctc aacaggtagc gaatatgtct tatgacttcc
     1501 tacctgttta tattgaagcc ggtttgattt attggtgctt ctgctgggtg ctatttttaa
     1561 ttcaggcgag attggaagtc cgctttaacc gatttgtggc gaaataagga ggaattgtgc
     1621 ttaaaattcg caatattcat aaaacctttg gcaacaacgc tattctacgc ggcattgatt
     1681 tagatattca aaaagggcaa gtggtagtaa ttttaggccc ttccggttca ggcaaaacca
     1741 cctttcttcg ttgcttaaat gcactggaaa tgcccgagca aggcacattg gaatttagtg
     1801 gtaatgctcc gctgaaaatt gattttgccg taaaacagag caaaaaagag attttagcgc
     1861 tacgccgcaa atccggtatg gtgttccaaa actacaacct gttcccgcat aaaaccgcat
     1921 tggaaaatgt gatggaagga ccggtatttg tgcaacaaca agcggtcgaa attgctcaaa
     1981 aaaatgcaaa agccctgtta gaaaaagtcg gactggcgga taaagcagaa ctctacccgt
     2041 ttcaactgtc aggcgggcaa cagcaacggg ttggcattgc acgagcatta gcaattcagc
     2101 cggagctgat gttatttgat gaaccaactt cggcacttga tcctgagttg gtgcaagacg
     2161 tgctaaatac gatgaaagaa ctggcaaatg aaggctggac aatggtcgtg gttactcacg
     2221 aaatcaaatt tgcccttgat gttgccgatg tagtggtggt aatggacggc ggtgaaatcg
     2281 ttgaacaagg ctcgccacag caactgttta accacccaca acacgaacga actaaacgtt
     2341 ttttaaatca aatcagagcg ggtaaataag aaacgatagc gctagcgtcc acgctagtgc
     2401 tatctaataa atggtacaag cggttaatta tgtataaatt gttatactgt tttggcacga
     2461 gcgtggacgc tcgcgccatc gtacagtaaa atcagctaac aaggttcccc ataaaggata
     2521 aataagacaa ggctccttaa tcttttagat taaggagctt atttttagat tttagaaatc
     2581 cgatttaagc cgcagcccat agtccaccaa aaatttggta gaacaagcta tttagtagca
     2641 ataagccgaa acctagcacc attaccgaga aatctaacat tcccgttctt ggcaggagct
     2701 tgcggataaa acctaacacc ggttcggtaa tttgtgctac cgtgtagtct aatgggtggt
     2761 tgccttgagt gacccagctc attaatgcac gaatcaaggt ggtgaaaaat agaatttgtc
     2821 cgaaggtttt gaccacactt aataagccga ttaatactgc tctgggtaaa tctacgccaa
     2881 acagaataaa ctgtaacgtt accaaagcgg cggcaattaa tagtgccgga aagcaaatat
     2941 ttttaacggt tggaatcagc ttgccaaccg gtgaaaccat cggttcggta attttaagta
     3001 aggtttgtga aatcggtaaa cgaggatcaa cccgacaaaa ttgcagccaa gttcttagca
     3061 ccagcacaaa acttaaaaag ccaacaataa gcgaaataac aggagctaaa aattccatct
     3121 ctttttctct ttctatacaa aacaagcggt cgttttttag aaaaaatttg caaattttca
     3181 gtaaaatctg accgcttgta tcttattaaa ttaactaggc aaattaagct tgtgctgggt
     3241 agtcccacca aatatcaaat aattcgctca cttgaacctc ttttaagccg ttagtttcta
     3301 accaagtttt cactaattgg cggtgagatt catcacattt gcctaatttt tctaagcaga
     3361 ctaaaccttc ccagtttaag tagccgttcg cttcaagggc taaaccgttt ggtcgaatca
     3421 cttcatcgat aaaacgatct acggtttcat caatttggtc aatgcctgtg ccttcagcaa
     3481 aggtgaattt aattaagaaa cctaattctt ggtattcacc taagtgcatt tttttacgtt
     3541 ggcgtgcgtt acgttgaata gccatttttt ctctcctcta tgaataaatc atttctttgt
     3601 aaaatataaa tcccacaccc cgtgtcctaa acgatgccct cgctcttcaa atttggttag
     3661 cgggcggaaa tccggacgtg gaataaaatc attagttgct gatgtatttt gcaactcgct
     3721 ctcaaattgg cgtaatactt caagcatatg ttctgcgtaa ttttcccagt cggtggcaaa
     3781 atgaataaag ccgttagggc ttaattttct gatcacacgg ctgataaatt caggctgcac
     3841 aatacggcgt ttgtggtgtt ttgctttttg ccaagggtct gggaagtaaa gctgtaagcc
     3901 acctaatgta ccgtcagcaa tgctgtctcg caaaatttcg gtggcatcgt ggcaaattac
     3961 tcttaaattc ttcacgcctt tttctaacgc ataagcgata caagccccca ccccgggcgt
     4021 gtgcacctca atgccgatat agttgcgatt cgggttttgc tctgccattt ccaccagcga
     4081 ttttcccatt ccgaagccga tttctaacac taccgggttg ttattgccga aaatctgctc
     4141 aaaattaaag ggcattggct ggtaatctaa gcctaaattt gcccagttgt tgttcatcat
     4201 atcacgttga taatcgctca aacgaccggt acgtaataca aaactccgca cttttcgtaa
     4261 ataacgccca tcttcggtaa actcggcttg ctcaacggtt ttacgttttt tatctgcaaa
     4321 agtctgtttt tctgacattt tcttgcctta aaacttcact aataccgaac cccaagtcca
     4381 gccaccgccg aatgcttcaa ggagtagtaa ttgcccacgt tgaattcgcc cgtcacgcac
     4441 cgcttcatct aatgccaccg gcactgttgc tccacttgta ttggcatatt tatcaagggt
     4501 aaccaccact tgatccattt ccatctctaa ttttttcgcc gttgcggtaa taatgcgtaa
     4561 attcgcttgg tgcggaatca gccaatctaa atcggatttt tgtagattat tcgcttctaa
     4621 ggtttcttct accacgcttg aaagttggtt taccgcaatt ttaaaagtag cattgccttg
     4681 catttcaata aagccggaac gctcttcgcc acgtttttgg cttcttaaag ttaagttatt
     4741 ctctaaatcc ggcgaagcgt gtaaatgggt cgaaataata cctggctctt cactcgcttc
     4801 taaaatcacc gcccctgctc cgtcaccaaa taacacaacc gtgctgcggt cggtttcgtc
     4861 cagcattctg gagttgatgt ctgaaccaat caccaatgcc tttttcactt gcccgttacg
     4921 cacgaattga tcagcgacag ttaaagcata cacaaagccg gtacaagccg ccgccacatc
     4981 aaaagcaatc gcatcttcaa tctgaagcaa accttgaatt tggcaagctg cacttgggta
     5041 agcgtgggag ttggtagttg ttcccaccac aattaaatca atgtcatttg cctcaattcc
     5101 tgccatttcc agtgcttgtt gagcggcttt tgcccccatt gttgccactg tttcgtcagg
     5161 ctcggcaata cggcgttcac gaatgccgga acgggttacg atccattcat cagaggtatc
     5221 gaccattttt tctaaatcag cattggtacg cacctttgtc ggtaaatagc ttcccgttgc
     5281 taaaattcta ctattcatat ttttattatt ctcaatcaat taaatgataa tccgttatta
     5341 tagcttgaaa accaacaaat atataggctt tacaagcggt catttttagc aaaaaagttg
     5401 cattcacgaa cgattttgca ctagaaccac ctcttgctag tatttatttc gcttgagcct
     5461 cttcgtatag ccacttcgct actcgcttgg cgaaataagt tagaataccg tctgctcctg
     5521 cccgtttaaa gcagagtaat ccctccataa tgcactcacg ctctttcagc cagccgtttt
     5581 ggattgccgc catatgcatc gcgtattcgc ccgaaacttg gtaggcgaag gttggcacgc
     5641 caaaattctc tttcacacgc cacaccatat ccaaataagg catacccggt ttcaccatca
     5701 ccatatctgc cccttcttga atatccatcg ccacttcgtg caagccttcg ttgccgttag
     5761 ccggatcgac ttggtaagtg tatttattac cgccttttaa gttgccggca gaacctactg
     5821 catcacggaa cggtccgtaa taattagacg catatttagc cgaatacgcc ataatttgcg
     5881 tattgataaa accgttttgc tcaagggctt cacgaatttt gccgattcga ccgtccatca
     5941 tatcgctcgg ggcaacaata tccgcccccg cttctgcgtg cgataacgcc tgttttacca
     6001 atacttcagt agtcacatca ttcagtacat agcctgtttc atcaataatg ccgtcttgtc
     6061 cgtgcgtggt aaacgggtct aacgccacat cagtaatcac gcctaattcc ggaaattgag
     6121 cttttaaagc tcgcacggca cgctgtgcca acccttgcgg gttataggcc tcttctgcca
     6181 tcagtgattt tttcgcatca cccaccacag ggaaaagagc caccgcaggc acgccatatt
     6241 taaccagttc tgcggcttca actaaaagct ggtcgatagt taaacgctct acacccggca
     6301 tagaaggcac ttgtactcgc tgattttccc cttcgatgac aaaaacaggg taaatcaaat
     6361 cattagcggt aagttgattt tctgccacta agcggcggct gaaatcgtgc ttgcgtaaac
     6421 gacgcatacg gcataaagga tattgggatt gaattacttg catttttaat ttcctaattc
     6481 ttaaaatacc tattcttgaa ataagaaagg catagcaaac aggtgctatg ccttttcaaa
     6541 atattactgt gcaacctgct ctgatggttc atcatcatct ttggggcgat aaaaccgagc
     6601 aaatagcaca ccaacttcaa acaataaaca cattggaatt gccaataatg tttgcgagaa
     6661 aatatctggt ggggtgagca acataccaat tacaaatgct gccacaataa tataagggcg
     6721 ttttgccttt aaatcttcgg gtgtggttac gcctgcccaa cataacaaga taatcgcaac
     6781 cggcacttca aagcagatcc cgaatgccat aaaaatggtt aaaacgaaat caagatagct
     6841 actaatatcc gttgccattg ttaccccttc cggagcggta gaggttaaaa agccaaatac
     6901 aagcggaaac acaatataat aggcaaaagc gacaccacaa taaaacagca atgtgctaga
     6961 taccaataat gggtaaacca aacgcttttc ctgcttgtat aaagcagggg cgacaaacgc
     7021 ccaaatttgg tacaaaataa aaggaactga taaaaacacc gaaaccacaa tggttaattt
     7081 aattggggta aaaaacggag tggctacatt ggttgcaatc attgttgcac cgtctggtaa
     7141 attgtccgtt aaaggtgttg ccaataaggt gtaaatatca ttggcccagt aaaccaatcc
     7201 gcaaaacacc aagagcacac agataaaact acgcagtaat cggtttctca gctcaattaa
     7261 atgtgtaatc agaggttgag actcatcaac ttgcgacatt atttgcctcc gatttctgcg
     7321 ctgattctga tgattgaggc gtagctaaat catcatctgg cggatagtaa gattccaacg
     7381 ttaaaagcga ttcgtccatt tctgcttgtt cagccagctc atcagccgaa agtggctttt
     7441 ctgtccgcgt aacattaagt tgctcagata aactatccac ttcaagcggt ttattttgcg
     7501 catttttttg caattcttgc gcctctaaca cctggctttc ttgctcgatt ttttgctgaa
     7561 tttctgcgac ttgctcatcg gttaatttag gaattgtgct gctttccgca gccgtttttt
     7621 ccaactcatt ttttgcagaa ttaagcgaat cttgcaactg ggtggctgac attttcagat
     7681 cttccaccgt tttatttaat tctggcgaaa gggagcttaa attcaactct tctgcctttt
     7741 taatgctctc ttttaattct tgcagtttca gctcttgagc cagttcattt tgtacgtttg
     7801 cggctaaacc tcgaattgta ctcacccagc ccattacggt acgaatcgca atcggcatac
     7861 gtttcgggcc tagcaccacc aagcccacaa tcataatcag tactaattca gaaaaaccta
     7921 tatcaaacac ggattaagcc tgctctttct cttttgcttt ctgctctgct gaaattgcat
     7981 cttttgcttc cactttttca aattcagcat cttttttctc atctgccatt gcttttttga
     8041 agccttttac agattcgccc aaatccgaac ctaaagtacg taatttcttc gtaccgaaaa
     8101 gtaatacgat gattgcaacc acaatcagaa gctgccaaat actaataccg cccataaaaa
     8161 ctcctttcat ttaataggga atagataaaa taaaacgctg tttattatat gttactttga
     8221 catataaaaa agtaattttg caaaaaattt gtcaaaaaca accgcttatt tgcgttgact
     8281 caaaatcaat accagtggaa ataaagttaa taacggcaca cttagccata tcggcaaaga
     8341 ttcaaatttc caaaatgcgc cacagatcac aatcgctgaa attgacagca caagaaaacg
     8401 gctatttgcg tttgaattct gtgcttttaa actttcgtta atttccgcta aacggaaatt
     8461 aatttgcttt tgctcttgta aggctttaaa caatgcctcc ggaaactccg caaaatgctc
     8521 ccgatattgc ggtaaacgtt gcttaatgtc tcgaaccatc gctttcacac ctacctgctc
     8581 attcagccag ttttgtaaaa acggttttgc ggtttgccat aaatccaact gtggataaac
     8641 ctgcctgccc aaaccttcaa tataaagaag tgttttttgc aacaacacca actgcggctg
     8701 cacttccata ttaaattctc ttgccacatt aaacaggttg agcaaaacgt gtccgaatga
     8761 aatttccgat aacggcttag caaaaatcgg ctcacatacc tcacgaaagg cttgctcaaa
     8821 tttatcaata tcggtatccg gcggcgtcca gcccgattcc acgtgcatta aggcaacacg
     8881 gcggtaatct cggttgaaaa atgcgacaaa actttcggct aaatagcgtt tgtcattgtg
     8941 gttcaacgtg ccgacaatcc cgcagtcaat gccgatatat tgcggatttt ccgggtgttc
     9001 tctgttcaca aaaatattgc cggcgtgcat atcggcgtgg aaaaaactgt cacggaatac
     9061 ttgggtaaaa aatacctgca caccacgctc tgccagcaat ttcatatcgg tgctgttcgc
     9121 ttccaactcg gcaatgttag acactggaat gccataaatc cgctccatcg caatcaagtt
     9181 tttatggcaa aaatcttgat acatttcagg cacatacagc atttcgctat tttcaaaatt
     9241 cgcccgaagc cgaatggcat tgtgcatttc tttgcgtaaa tccagctcgt ctaaaatagt
     9301 tttttcgtac tctcgcacca cttcaaccgc ccgtagccgt ttgccgtcat tcgataattt
     9361 cgggataaag tgagcaattt catacatcaa ctctaaatcc gccttaatca ccggctcaat
     9421 gcccgggcga atcactttta acaccacatc tttgcctgca agcggttgat tttggttaaa
     9481 ttttgccgtg tgaacctgtg caatcgaagc agaagctaag gcagtttcat caaagttttc
     9541 aaaccaagtt tcaagctttc cgcccaaagc ctgctcgata atttgacgag cgattttgcc
     9601 gtcaaacggt tcaacattat cttgtagcaa ggcgagctgg tcggcaagct ccggtgcaaa
     9661 cagatcacgt ctggtagcta acatttgccc gagcttgatc caaaccggtc caagctcttg
     9721 caaagccaaa cgtaaacgta caccgtaagg tttgtctgaa tgttgattct tcacccaaaa
     9781 caaagcctta cgccctagct ttattttgcg ggtaattggc agattcggaa tggcttcatc
     9841 aataccatag cgaagaaaag tgcggataat atggtaaaag cggttgagat ttttgatgtt
     9901 cattgaaata tatatttaat ggtaattagg aagattttag caaaattctg taaaaattta
     9961 accgcttgtt gggctactat gggtatttct gctcaaaatt ctcaatttct ttctgtactt
    10021 ccgcaataag tgtttgttca gaggggaggt aaagttggta ttggctggca aaaattttat
    10081 tctgattttc cggtagcgaa aattttacca ccgcatcatt tttatcggca caaagcaaga
    10141 caccaatagt ggcattttcg tgcggcagtt tttcaactcg gtcaaaataa ttgacgtaca
    10201 tctgtaattg ccccaaatct tgatgggtga gcttgtgggt tttaatttca aaaatcacaa
    10261 aacattgaag taaacggttg taacaaacca aatcgacaaa aaaatcatca ccgtctaggt
    10321 gcaaacgctt ttggcgtgcg ataaacgaga aaccgttacc caattctagt agaaaatcct
    10381 gcaaatgcgt aatgatggct tgctctaaat ccttttcgta ataagcactt tcccgtttta
    10441 gtccgagaaa ttccaatacc atcgggtctt taatgagctg tttcggatca accggctgct
    10501 gctcatttct ggcaacagca agcacacttt ccttatcatt actgagcaat aatcgctcgt
    10561 atagactact attaatttgc cgttccagct ggcgtgaact ccaattattc ttacaacttt
    10621 cagccaaata aaattccctt ttgtcagaat cggagatttg aattagacga cgatattgtg
    10681 tccaattcaa ttgcgaccgc agtgcggtcg caattggaaa cgcacgataa aactggcgat
    10741 aacgctctaa ttgacggcta caaaaaccac ttccaaattc tggctcaagc tcttttgcga
    10801 gcattttaat caggtatgtt ccataatcag cacgctcttg cccttgttgc tcctgttcaa
    10861 aaatccgttt tccgatgtgc caatacatca gcacacgttg gaaatctacc gcacgaaccg
    10921 cattttcacg agcttgagca ataatttgtt taatatctta gatcatcgtt gtttctatta
    10981 acataaaagc ctccgttttg gattaagttt atgcttaatc tatccggagg caatttcttt
    11041 cactcaactt ttcgagtcat atcacaattt tattttgtta aatttaattt tgcacaaacg
    11101 cttgcgtttg aacatcagct ttgctgatgg ctcgaagagc gaacgtagtg agtaaatttt
    11161 tgctctaatt tgagcgcttg ttgggcaagt tcttcgactt ggtcatagaa atgcaccgcc
    11221 tgtaaacgat gcaccaacac cggtctttct tggattaaat tctcaaccaa atgttgatta
    11281 ttttgctcaa attgagcttt tactttacct agcaattttt tagcaagatc ggtgctagtt
    11341 tgagccacta catcgccaac aaaaggggaa agcagttcgg cagggtcttt ttcgagctgt
    11401 tcaagtaatg cagtgaaatg ttgcaacact tgaatatcgc ccgtcagcac caacgattta
    11461 ttattaatca gctcggttaa tttttgctta tccgctagtt tcggcagggt gtcaaatgcc
    11521 agttgcaccg tacaatctgc ttccccctcg tagttgccaa gccaatcggt tcggctttcg
    11581 ctaaacaaca caaaaaagtc gattttaggc gaagttaggg cgatttttag cacttttccg
    11641 gacaatttac gcaaattcgg ttcaatatga ggcgagcgtt taagtaacgc attaaaagcg
    11701 gtttcaatca gaccaaaggt aaattgcggg agcattaatt gttgttttac attatttaac
    11761 attcgtacct acttaccctc ttcacttttg ggagaaggat agattgttct tcattaagaa
    11821 gcaaaatcag ggagaggggt atttgcaaaa tattgaataa atatgaccgc ttgccccctc
    11881 tctctgctta tttcgctaaa cgctcataag cggtctctct cccacaaagg gagagagtca
    11941 tttaagagaa aactaaaatt tataacctct gtgtaatgcc acaatgccgg cacttaagtt
    12001 gtagtaattc acgctttcaa agccagtttg ttccatcatt gcttttagct cgtcttgttt
    12061 cgggtgcatt cggatcgatt cagctaaata gcggtaactt tcggcgtcat ttaccaccac
    12121 ttcgcccact ttcggcaaaa tattgaatga gtagaaatta taaagctggc tgattgggtc
    12181 gataatcggt tttgagaatt ccaacacaag taagcgaccg cccggtttta gcacgcggaa
    12241 cattgaacgt agggctttgt ctttgtcggt aacattacgc aagccaaaac taatcacaat
    12301 acaatcaaaa gtgttatcag caaaaggcaa gcattcggca ttcgcttgaa cgtagctcac
    12361 atttccaacc acgcctaaat tgcgtaattt ttcccgcccg acttccaaca ttgagctgtt
    12421 aatatcggct aaaatcacct caccactttc accaacaatg cgagagaatt ttgcggtaaa
    12481 atcacccgtg ccgccggcaa gatccagcac tttttgccct ttacgcacgc cactgcaatc
    12541 aatggtaaag cgtttccaca ctcgatgaat gccgaaagaa agcaaatcgt tcattaggtc
    12601 atatttgcct gccaccgagt gaaacacatt tgcgaccagt tgctgttttt cttctttcgc
    12661 tacggtttta aacccaaagt gggtggtttc tgccgattgt tgcacttcat ctttaggtgc
    12721 taattgttct acatcgctca ttttcttgtc tctagttgca aaatttaggc gtaaccatag
    12781 caaaaaagcg gtcgtttttc tttaattttt tgcaaatttt cttaagtaaa taaccgcttt
    12841 cttgactaga aaagccaaat tctgtaacat tcgcacacta ttttttcttg aggattacac
    12901 attttggaca gtcatagtcg atacttaccc gtttaaccta tcttgtctaa cctcaatgtt
    12961 accgacaagg tcggtaatgc tcgcctagta tctttgttcc tttttgttcc aagcctccta
    13021 actatttgga gctaaacatg atccgtgctt ttggactaga taacgcatgt ttaatcagcg
    13081 ttgatgaaac taacccaact ttattaaatg atgcgatttg gattgatctc atcgatccat
    13141 cagaagctga acgaaccgta ttagaaaacc gcttagacca aacactcgct gaagaacgtg
    13201 aattggaaga cttagaggcg tctgcccgtt tctttgaaga tgaagacggt ttgcacctgc
    13261 actcgttctt ttactgctta gatgatgacg attacgccga tattgccact gtcgccttca
    13321 ctattcgtga cgggcgtttg tttaccttgc gtgatcggga tttacccgca tttcgcttgt
    13381 atcgaatgcg ttcccgccgt gagaaattga ttgacagcaa cgcctatgaa ctcttactcg
    13441 atttatttga gaccaaaatc gagcagcttg cagacgtaat tgaagaagtc tatgctgact
    13501 tagaaaaatt aagtcgggtt attctaaacg gtcagcaaga aaatgagaat ttcaatgatg
    13561 ccctttctcg cttaactgaa tttgaagatg caagttcaaa agtgcgttta tgtttgatgg
    13621 atacgcaacg ggcgttaagt ttcttactgc gtaaaacccg tttgccgaat aatcagctag
    13681 aacaagcccg tgacattatg cgagatattg aatctctgca accgcacaat gaatccttgt
    13741 tccaaaaagt gaatttttta atgcaagcgg caatgggtta tatcaatatt gagcagaacc
    13801 gaattatgaa attcttctcg gtggtgtcag tgatgttcct acctgctacg ctggttgctt
    13861 ctacttacgg tatgaacttt gaatttatgc cggaacttca tttccaatat ggctacccta
    13921 tggcgattgg tttaatgatt gttgccgcct ccgcccctta tctttatttt aaacgtaaag
    13981 gttggttata atttattttg gggctgtcct agataactaa cctaaactac ccttaaccaa
    14041 ttgttttaaa aaggatattt gagattttaa gtcactgtga ttaaaacgcc attcgcattc
    14101 tttcaaatac agctcaaaat gcactttggg aatgccgtta aacttacgca aatggcgttt
    14161 tgctt
//
LOCUS       DANLUT010000049        13795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLUT010000049 DANLUT010000000
VERSION     DANLUT010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..524)
                     /locus_tag="PXB38_001164"
     CDS             complement(<1..524)
                     /locus_tag="PXB38_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5353493.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVDALLNQNRRVPNLKNRVDEATEQAVVKFAFDNPAFGQVRVSNELRKQGIFI
                     SAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQALERKKEDDVACGEIET
                     AHPGYLGSQDTFYVG"
     gene            complement(664..1860)
                     /locus_tag="PXB38_001165"
     CDS             complement(664..1860)
                     /locus_tag="PXB38_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL5353494.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(1880..2371)
                     /gene="tsaE"
                     /locus_tag="PXB38_001166"
     CDS             complement(1880..2371)
                     /gene="tsaE"
                     /locus_tag="PXB38_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL5353495.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILINF
                     HQK"
     gene            complement(2371..2925)
                     /gene="orn"
                     /locus_tag="PXB38_001167"
     CDS             complement(2371..2925)
                     /gene="orn"
                     /locus_tag="PXB38_001167"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL5353496.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(2935..3414)
                     /gene="coaD"
                     /locus_tag="PXB38_001168"
     CDS             complement(2935..3414)
                     /gene="coaD"
                     /locus_tag="PXB38_001168"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL5353497.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(3416..4696)
                     /gene="waaA"
                     /locus_tag="PXB38_001169"
     CDS             complement(3416..4696)
                     /gene="waaA"
                     /locus_tag="PXB38_001169"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL5353498.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATPLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(4976..6355)
                     /gene="yegQ"
                     /locus_tag="PXB38_001170"
     CDS             complement(4976..6355)
                     /gene="yegQ"
                     /locus_tag="PXB38_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL5353499.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            6483..6854
                     /locus_tag="PXB38_001171"
     CDS             6483..6854
                     /locus_tag="PXB38_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353500.1"
                     /translation="MKLKYLLATILLAFSTFTVAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQAIEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(6893..10369)
                     /gene="dnaE"
                     /locus_tag="PXB38_001172"
     CDS             complement(6893..10369)
                     /gene="dnaE"
                     /locus_tag="PXB38_001172"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL5353501.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDF
                     TNFCGLVKFYGEALGAGIKPIIGADVYVRTEAGSEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYIEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(10595..11692)
                     /gene="lptG"
                     /locus_tag="PXB38_001173"
     CDS             complement(10595..11692)
                     /gene="lptG"
                     /locus_tag="PXB38_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL5353502.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRF
                     RIGLAVMKTALPLVLFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKAGTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPVPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(11692..12801)
                     /gene="lptF"
                     /locus_tag="PXB38_001174"
     CDS             complement(11692..12801)
                     /gene="lptF"
                     /locus_tag="PXB38_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL5353503.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(12975..13772)
                     /locus_tag="PXB38_001175"
     CDS             complement(12975..13772)
                     /locus_tag="PXB38_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353504.1"
                     /translation="MRFWGKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGN
                     VGNLLQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKI
                     GERLFLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIA
                     TNQEKIMAAKGKKAPQYKTVTKDNIGLKNLRVTALGTFLVFDTSVDAAKLRVKGNFED
                     IAQGENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT         3940 a         3184 c         2549 g         4122 t
ORIGIN      
        1 cccacataga aggtatcttg tgaacctaga tagcccggat gagccgtttc aatttcgcca
       61 caagccacat cgtcttcttt tttacgctcc aaggcttgaa cttggttttc actcagaata
      121 atgcctttct cagccactgc tttttctaac gcatttaaac gctgtttaaa gttagcgaga
      181 ttatggcgta gccaaataga acgcacacca cctgctgaaa taaaaatacc ttgtttacgg
      241 agttcgttac tgactcgtac ctgcccaaat gccggattat cgaatgcaaa cttcacaaca
      301 gcttgctctg ttgcctcatc cacacgattt tttagattag gaacacgccg attttgatta
      361 agtaaggcat ccaccccacc ttgctcaact gcttgttgat agcgatagaa tgtatctcga
      421 ctcatcccca tcaccttaca ggcttgagag atattgccca gttcttctgc taaatttaat
      481 aaaccggtct tgtgtttaat gagagggttg ttagaataaa acatgagagt ttcctttttg
      541 tttagattga tttttgacac tcatattcta aacgggaaac tctcactttt tagagtgaat
      601 tgtcagatca agtctgatct tctacaaata aaggctgatg gatatttcca tcagcctttc
      661 aatttacttc accttcaatt ttttacctac cgtgatctga taatttttca aattattcag
      721 ctcactgatt ttttgcggcg tagtaccgta agctctagca atcgagtaaa ccgtttcatc
      781 ttgttggaca atatggtagc cactgttaga caccttaatt tctctttgag agtctgattt
      841 tttagactga tttttttgat ctttctcaag agctgttttt tcttttagtt gctgctcttt
      901 tttcttattg gttttagccg aatcttcttt tttatcctct tttttgctct tttctttcaa
      961 ttttgtctta tctgattgcg tattcttctc ttgtttctca gaagcaggct ttttagttaa
     1021 atcagcttta gcagtttttt cctctttctt attttgctta tcttctttgt ccgatttttt
     1081 actgaccgaa gaactagcaa ctgcattttt tgcccgataa gcgactaatc cattataaat
     1141 ggcccgagca acttgtttac gataatttgc actggctagc tttgcttcct cggttgaatt
     1201 agataaaaat cccgtttcca ccaatacaga tggaatatca ggtgaacgca gaacacttaa
     1261 gcttgcgtgc tgaggagacg attttgctaa tgcagccaca tttgacattt tagctaaaat
     1321 gctcttgcct aattcatagc cggcacgttg agagtgagag aactgtaaat caagcactgt
     1381 ttgatttaaa taacgttcat tgttgcttga aagcaccgaa ccagccccgc caagtaattc
     1441 cgactgcttc tcgtggtctt ccaaccattt acccatttca tcgctagcac ggctattaga
     1501 aagtacccaa accgaagccc ctttcaagga atcgccacga ggcgaagagt ctgcgtgaat
     1561 agaaaccagc agatcggcac gatgcttacg ggcaatctcg gtacgttgcg gtaattggat
     1621 aaaataatct cccgagcgtg tcatcactgc tttaaaatta ggatcggcat ctaacaaggc
     1681 ttttagctct ttagaaattg cgagggtaac gcttttttcc aaaatcccca gatttttacc
     1741 aatagccccc ggatcttttc ccccgtgtcc ggcatcaatc gccacaatgg ttttggcaaa
     1801 tgtggaaaaa ctgaataaac tcaatgtgct aaaaacaata aatctgataa cttgcttcat
     1861 taccttccct acaagcggtc tatttttgat gaaaatttat taatatatct actgcagttt
     1921 gattttgcgg caacaggcta atctgccgtc cgtcattctt ataatcaatt tggatcacaa
     1981 aatcagcctc tggaatcatt cctttacctt taactgccca ttcaagcaaa caaagcgttt
     2041 gtggtttgaa ataatcacga attcccataa actccagctc ttcaggatcg gctaagcgat
     2101 acaaatcaaa atggtaaagg ctgaaaggcg gaagttggta ttcttccacc agagtataag
     2161 ttgggctttt tacattgcct tgatgcccga aagcccgtac gatcgagcga gttaaggtgg
     2221 ttttacctgc cccaagttcg ccgtttaggt aaacaaccag cgaatgagct tggtcttgca
     2281 ataaatattt cttaagttct aacgcgaatg attgaccaaa ttccagcaat ttagtttcat
     2341 cttcgcagta aaaagagaga gaatctgtca ttatttttgg tctagctgaa taaaatgttc
     2401 ccgataaaat ttcaattcgt taatggattc acgaatatcg tccaacgcta aatgcgtatt
     2461 gcctttactg aatttatcta aaatctccgg tttccaacgg cgtgccagct cttttaaagt
     2521 actcacatct aagtggcgat aatggaaata atcggctaaa tcaggcatat atttatacaa
     2581 aaaacgttta tcttgagcaa tgctgttgcc acaaatcgga gaagcgcctt ttggcaccca
     2641 gcgttttaag aagtctaaag tttgcaactc tgctgcccgt tcagtcaatt tgctcgcttt
     2701 cactcgttca atcagcccgt tagcggtatg ggttttgacg caccaatcac tcattttctc
     2761 taataaatca tcggtttggt gtaccgcaag taccggtcct tccgctaaaa tatttaaatc
     2821 cttatcggtc acaatggtgg cgatttcaat aatgcgttct ttttccggat ctaaccctgt
     2881 catttcaaga tcgatccaaa ttaaattttg ttcgttttga gccattttat ttccttacac
     2941 ttttgcaatt tttagggcat ttttgaccgc ttgcggcaca aattggctga tgtcaccatt
     3001 gtggcgatag atttccctta ccatcgttga agaaaggtaa cgccattcta ttgaaggggg
     3061 gaaaaaaata gtttctaaat cgcccgataa tttgtaattt aactgagcga gttggatttc
     3121 atagtcaata tcatctgccc cacgaatacc acggattaac gctttggcat tctgctgttt
     3181 ggcaaagtct gctaacaatc cactaaagcc aatcacctca atattttgcc actgggtaca
     3241 gctttgttta acaagctcca ctcgttcttc aagactaaaa agcggctgct tgcttgggtt
     3301 ttgagcaacg gcaacaatca cttttccaaa taagtgagag gctttgcaaa ttatgtccaa
     3361 atgcccattg gtaatgggat caaaggtgcc tgcataaatt acgttataac tcattttatt
     3421 tctctaaata ggaggctaat aaatccaaat ggcgttttaa tgccccttga ttttcctgta
     3481 acacgcttaa gccggatttt gcaatttctt gtccgatttg gggctgctta agcaataatt
     3541 gaatgctctc ggtcaaagcc tcgactgaac tttcaatttc aatcacgcct ttcacctcac
     3601 gcaatttctc aaagatttca gggaaattat aggtgtaaag cccagaaacc accggaatat
     3661 taaaagcgat tggttcaagt ggattatgcc caccgtgttt gaccaaactg cctcctacaa
     3721 aagcaatgtc agacaaccca tacagtaaca tcatttcccc cattgtatca cctaacatta
     3781 cttgagtatt ttggcttaac gttttattct cagtacgttt tacataattt aaatctgatt
     3841 tttgaatcag tagctcaact aaaccaaaac gctccggatg gcgaggcact aaaatcaaca
     3901 ctaaattcgg gtaatgctct aataagagtt tatgagcatc taaaatcagc ttctcttccc
     3961 cttcgtgagt actgccggca atccaaatcg gtctctctgt taaattcaga ctagctttag
     4021 ttttaatcac cgattgatga agctgtggcg taatttctaa atcaaatttc aggttaccgg
     4081 tattaaccat ttttgccggt gcataaccga gtgctaaata gcgatctcgg cttacctcat
     4141 cttgagccat aatcagacta atttggttga gcatatcctt aatgctacct tttacccagc
     4201 cataacgctt cgcagaacgt ggcgataagc gggcattggc aatcacaaat ggaattttac
     4261 gaatatttac tttacgaatt aaattcggcc aaagttcggt ttcaattaca atcatcaatt
     4321 tcggatcgat aaaattcaaa aaccgctcga tagcatcagg taagtcataa ggcaaataaa
     4381 aatgtgaaac actattacca aaagcagctt gcacacgccc agagcctgtt ggcgttaccg
     4441 ttgtgactat caacggaagt tcaggatatt gcttgctgac tgccttaatc aaaggcgttg
     4501 cagcaatcac ctcaccaacc gatgccgcat ggattaccac cccttttgct ttcggttttt
     4561 ccgattcgtc ataaatccca taacgctccc ataaacgttt ccgataagcc ggttgtttac
     4621 gccctttgta ccacattaat agcagaacca caggctgtaa tagataactt aaacaaatat
     4681 agagtaaacg tagcatttat tttccttata ccataaccct cgcctcttgt gggagagggg
     4741 gaatattgca aactgttaca aaaaaacgac cgcttgccct ctctctgata aaattgctga
     4801 acacaatttt atcggtctct ctcccacaag gggagagagt caaatacgcc aataaatcgt
     4861 tcctctcttg ttcgagaggg gggaacaagc ggttattttt accaaaaatt ttgcaatcta
     4921 tatcctcaaa gacaaaacca cggaataacc ttaatccgtg gtttatctcg catcattacg
     4981 cttgatgtgg attgcgggta ttcgtattca ctaagttacg cattaaaagt gcaaaatcca
     5041 actcaatatc tgccggcaca tctaaaaaga caaaatgccc gtcaccgagt gctgcgtcca
     5101 cattttcatt tttgcggtta agcatacgct cgattttaaa tacaatgttg cctttagggg
     5161 tcatcatttc cactgaatcg cccactaaga atttgttttt cactgccact tccgccaagc
     5221 cttctgcatt gcgtttgccg gtaaattcgc ccacaaattg ttggcgttct gaaatcgaat
     5281 agccatattc atagttttgg tattcatcgt gagtatgacg acgtaagaag ccctctgtat
     5341 aaccacggtg tgcaaggctt tcaagagtat ccattaaact ttcgtcaaac ggtttaccgg
     5401 cagcggcatc atcaatcgcc ttacgataca cctgagccgt tctcgcacag taatagaacg
     5461 atttcgtacg cccctcaatt ttcagtgaat gcacccccat ttgagttaaa cgctcaacgt
     5521 gttgtactgc acgcagatct ttagagttca taaaataggt gccgtgttca tcttcaaagg
     5581 cggtcatttg ctcatcaggg cgttgtgatt ctgtataaag gaacacttta tctgttgctt
     5641 cgccattacc tagagtagga gccacatttt tgacttcaat ttccggctca tacttaggca
     5701 caatttgccc tacctcatca atcttacctt cttccatttt atattcccaa cggcaagcat
     5761 tggtgcaagt gccttggttt gggtcacgct tattgatata gcctgaaagc aagcagcgac
     5821 ctgaatatgc catacacaaa gcaccgtgaa cgaagatctc aagctccata tccggcactt
     5881 gttcacgaat ttcttcgatc tcttcgagtg ataattcacg ggataaaatc acacgggtta
     5941 gccccatttg acgccagaat ttcaccgttg cccagtttac cgcattggct tgcaccgaaa
     6001 gatgaatatc catttcaggg aaattttcac gcaccaacat aattaagccc ggatcagaca
     6061 taatcaaagc gtccggcttc atatccacta ccacttttag atctttgatg aaggttttta
     6121 attttgagtt gtgtggcgca atgtttacca ccacatagaa tttttttcct aaggcgtggg
     6181 cttcatcaat cgcaactttt aaattggcgt ggttaaattc attattacgc acacgcaagc
     6241 tataacgggg ctgtcctgca taaatcgcat cggcaccata agcaaaagcg taacgcatat
     6301 tttttaaaga acctgcaggc gaaagtagct caggtttggc atattttaaa gtcatattat
     6361 tctcttttct gataacaagt caggacttct cgacgtgaga agcgtaagcg gtatattttc
     6421 taagaaatat tgcgtgatgg caagctaatc cattacaatc cgatttttat gtggggaaaa
     6481 atatgaaact taaatacctt ttagcaacaa tattactggc tttttcaaca tttaccgtcg
     6541 ctcaaagcat caagacggag atgatgcaaa tgaatatgca agcgaataaa ttgatgcgtg
     6601 ccgaatcggc agaagagttt agcgaaattg cgaatgattt cattataatt accgagaaaa
     6661 ccaaagggat ttttcccaat agcgtagaag gcgataaagc agctcaggaa gattaccaag
     6721 ccggtatgca aaaattaatt gatatggtta atcaagccat tgagaaagct caagcaggtg
     6781 aattgcaaga agcaaaaatg ctgatttccg agcttgaaat gatcaagcgt gaatatcaca
     6841 aaaaatacaa ataattcaac acattaaaag ggtgagctaa agctcaccct ttctattcaa
     6901 attccagttc aaccgaattc tcaccaagaa gtgcctttaa ttcgctaaac attgcctcat
     6961 tcgggctgat tcgccactct actccgcctt tgagcaatac cctaccttcc gggctttggt
     7021 aataaaaatg cagcggtaaa gtgccttctt tatgtggggt gatgatagcg gtcatttttt
     7081 taataaaatc tgcagaaagt tgctctttgc taatcgctaa cgctaaactt ttggcaaatc
     7141 gaccccttgc ttcatcaagg gataacactt ctcgagccga cattttcagt ccaccgctga
     7201 aatcatcaaa ctgtaccgaa cctgttgcca caataatttg gtcttgttgc atcaaatgcc
     7261 cgaaattttc taaggcttcc gagaaaaggg taatgtccaa tttccccgag cgatcttcaa
     7321 tagtcgcaat cccaatacgg cttcctcgct tggtaactgc cactcgagat gccataacaa
     7381 ttcctgaaac cgtggtcatt tgccctcgga aagtcggttg caattcattc agccgattag
     7441 gggcatagtg ggataattct ttgaggaatc taccaatcgg gtgtccgctt aaatacagcc
     7501 cgagcgtggc acgctctcca tctaaaatca cttgctccga ccattttggc gtattggcgt
     7561 aagcattttg cacttcttcc ggtgtctcgg taagcacgcc aaacatatcg ctctgcccga
     7621 gttcctccat tttagcgtgc tgatctgagg ctttaagtgc atcttccaaa ttcttcatca
     7681 aggcagctcg gtgagggcct aatttgtcaa aagcaccgga cataatcagg ctttcaaagg
     7741 tgcggcggtt gatttttttc agatcgaccc gagcggttaa atcaaataga tctttaaatt
     7801 tcccctcttt ttggcgagct gccagaattg cctcaatcgg tccttcccca acgcctttaa
     7861 ttgctcctag cccgtaaaca atttcgcctt tttcatttac gctaaaacga tgtttaccgc
     7921 tgtttacatc aggcggcaca acggttaagc ccatattcat acactcatcg tagaacccga
     7981 caattttatc ggtattatcc atctctgagg tcattaccgc agccataaat tctgccggat
     8041 aatgggcttt tagccaaagt gtttggtaag aaaccaacgc ataagctgct gagtgagatt
     8101 tattaaagcc gtagccggca aacttttcta ccaagtcaaa aatttgaccg gcaagtttac
     8161 cgtcaatccc tttggcttcc gccccttttt caaacacttc acgctgtgca gccatttcct
     8221 ccggtttctt cttacccatt gcacggcgga gtaagtccgc tccaccgagt gtataaccgg
     8281 caagctcttg tgcaatttgc ataacctgtt cttggtaaac aatgacccca taagtcggct
     8341 cgagaatagg ttttaagcat tcgtgttggt attgcggatc aggataagaa acctcttctt
     8401 tgccgtgttt acggtcaata aagttctgca ccatacctga ttccagcggc cctgggcgga
     8461 atagtgccac caatgcgata atatcttcaa aacagtccgg cttcaggcga gaaattaagt
     8521 ctttcattcc ccgtgattca agctggaata ctgctgtagt tttagctgcc agcaacagag
     8581 caaaggattt tttatcatca agcgaaatgg tttcaatccg aatcggctct ttgccttcac
     8641 gagccaaacg ttcgttaatc atctccaacg cccatttgat gatggtgagc gtacgcaagc
     8701 ctaagaagtc aaacttcacc aatcctgcat attccacgtc atttttatca aaatgggtaa
     8761 ccgggtgtaa gccctcgcta tcgcaataaa gcggcgaaaa atcggtaatc gcagttgggg
     8821 cgatcaccac accaccagcg tgtttacctg cattacgagt tacaccttcg agcttacgag
     8881 ccatatcaat aaggtctttc acctcttcat cggcttcata tagctcaggc aattttggct
     8941 cagcggcaaa ggctttttca agcgtcattc ctggatcggg cggaatgagt ttggagatgc
     9001 gatccacaaa gctatagggg tgtccaagca ctcgccctac atctcgaatg accgctttcg
     9061 ccgccatagt accgaatgtg ataatttgcg ataccgcttg tcgcccgtag gtttccgcaa
     9121 cgtgttcaat cacacggtct cgcccgtcca tacagaaatc aacgtcaaaa tcgggcattg
     9181 aaacacgctc agggttgaga aaacgctcaa aaagcaaatc aaattccaat gggtcaagat
     9241 cggtaatctt caacgcataa gccaccaatg agcctgcccc tgagccacga cccggtccta
     9301 ccggaatatc attatctttg gaccattgga taaactccat cacgatcaaa aagtaacccg
     9361 ggaaccccat ttggttgatc acatctaatt caacttgcaa tctttcgtca taaaccgacc
     9421 gcttgttcgc cctttcctca ggatcaggga atagaaactc taaacgctct tctaagcctt
     9481 ctttcgattt ttttaccaag aaatcttcgg tggaaagctc accggtcggg aaatttggca
     9541 ggaaatactc gcccaaacgc acggtaaccg aacagcgttt cgcaatttca accgtgtttg
     9601 ccaatgcact cggtaaatcg gcaaacagct tgcacatttc ctcttcagta cggaaatatt
     9661 gtttcggtga gtattttttc gggcgtttcg ggtcgtctag ggtgtagctg tcgtgaatgg
     9721 caacccgaat ttcgtgtgcg tcaaagtcat cttctttcaa gaagacaaca tcatttaccg
     9781 ccactaacgg aattgcattt ttttgtgaaa attcgaccgc ttgtttgata tagcgttctt
     9841 cgtctgcccg tccggtacgg caaacggaaa ggtaaaaatg attcgggtaa tattgctgat
     9901 aaaaagccac tttttcttca gcttcttgtc ggttttcttt gagtaaggct ttacccacat
     9961 cgcccattcg cccgcccgaa agaatgataa tgccttcatt caactctgcc agccattcac
    10021 gttccaccat cggaaattca atatagcctt gctgataggc cttagacaaa atttgggtaa
    10081 tgttatggta gcctttattg ttctttgcaa gtaatgtcag ttcaaaataa tcttcactgc
    10141 ctgcctcggt tctcacataa acatccgccc cgataatcgg cttaattcca gctcccaatg
    10201 cttcgccata aaatttcacc aacccgcaaa aattagtaaa atccgtcaag cccatcgcca
    10261 ccatattatt ggcaaccgcc gttttgacta acgatttaac cttagctaaa ccattaatca
    10321 ttgagaaatc actgtgaact tttaaatgaa cgaaacgaca atctgacata ggaatataat
    10381 ctaagtaaag cagttcccct ctttagtaaa gactgtcagg ttctaaaaag tgaagcctgc
    10441 tgtgaataaa atcccgttgg gcgaatgtta ttcgccccta caaacgagca ttattcttgc
    10501 tcagagttac atttaaaatc cgaatgtagg ggcgaattac attcgccctt tcagaacctg
    10561 acaaccctgc tttatctaaa gaggggagta aaaattaatc acgttttttg cttaacagcc
    10621 accaaacgat gatcaaacag agtaggcttg gaattaatgc tccaaccggt acaggtaacc
    10681 aagtggcaat taagcttaaa ttgccaaaca caatatttgc cacatagaac ataaagccgg
    10741 caacaatacc aatcacaatt ttcgccccca tcgtactact acgaagcggc ccgaaaataa
    10801 aggagatcgc aagtagcatc atcaccgcca ttgagattgg ttggaatact tttcgccaga
    10861 aggtgatctc aaaacgtttt ggatcttgtc cggtatcttt taagaagccg acataatctg
    10921 ccaagcctga aatcgagagc gactccggtt tgagtgaaac aatgcctaat ttgctagggg
    10981 ttaaactggt ttgccaaact tgatccggct gtttagcttg ctggatctga ttttctccca
    11041 cagtcgattt ttccacttta gacaacaccc agcctttttc atcgctgtaa ttcgcagtac
    11101 cggcttttaa aacggattgc aattcacgtt tgttttgtcc ttcgccgaat tgataaatca
    11161 gtacgttatc taagcttttt tcatttttaa tatgattgat atagataaat gaattgccat
    11221 ctttcgccca aaacccgtct tttgtcgcaa gcattgagcc accgctttga gcaatcgaac
    11281 gcatattacg ggcaaattgc tcggtttgtg gcacgcccca ttcgccaata atcatagtaa
    11341 aaagtaccag cggtaaggca gttttcatca cggctaaacc aatgcggaaa cgggaaaaac
    11401 cggaggcttg catcaccacc aattcactgc ggctcgcaag gttgcctaaa ccgagtaatg
    11461 agccaagtaa tgccgcaatc gggaaaaagg tttcgatatc tcgtggaata gttaaaaaag
    11521 tatagtatgc cgcttttaag ccatcgtaag agccacgccc tacatcacga aactcttcca
    11581 caaatttaat aatcgcccca agcccaatca acataaacag ggttaaaaaa atcgcggata
    11641 aaatcgtttt gccgatgtag cgttctaaaa tattcattga gaaaaattgc attatgccac
    11701 cgccttattg gttaattttt ttgcaccaaa ttgatagcgt aacttagaca taaatttact
    11761 atcccacgca tttaaaataa cacctaaaac taaaaaggca actgatacca acggcattaa
    11821 cacttccgca ttcaacttgc ctgatgcccc tgacgatttc agcgagcttt gtagtaagaa
    11881 atagattaaa taaagcaata acgccggcag tagtttagca aaacgccctt gacgagggtt
    11941 tacactactc attggcaccg ctaataatgc cattaacggt acagctaaaa tcaaagcaag
    12001 ccgccaatga agctcggctt ttgcttccgg cgttttggtt tccattaatt tcttgaaatc
    12061 ggctcgttgc actaatttct catcagattc aacgtcttga tagcctaaat aagcagaata
    12121 attctcaaaa tgtgaaatac ggaaatcggc actttgtggt gtaccttcaa aacgcttgct
    12181 ctctgccaag gttaagactt gatcaccatt tggcaaacct tgcaacgtgc cggattcagc
    12241 aacaaccact gaaggtttgt ttttcttctg ctgttccggc tggaaaacgt agatatcatt
    12301 tagactgtta ttttcaattt tatcaataaa taacacatag ccaccggcag acataaattg
    12361 tccggccgaa agagccgcaa aacgtgggtt ggctttcgct tccgctaaca tttcactctg
    12421 tttattaatt gcccaaggcg taagccaaaa cacgttataa accgctaatg cagtggtaaa
    12481 aatcgagaga aacatcgcca ctttaaccaa tagcccttgc ccgataccac aagcccgcat
    12541 tacggtaatt tcactttcgg cataaaaccg cccgagggtt aataacaagg cgataaacag
    12601 tgagagtggc agcattaatt gtgccattgt cggcatacct aagcctaata agctcaccac
    12661 taaatctgcc ggtactttac cactcacagc agaacttaga acacgcacta attgctgaca
    12721 aaaaaagatc agtaataaga taaacaatat cgccaattgg cttttaaata tctctttggt
    12781 taaatatcgg cttaagatca cgttttttct ctataacatt tacaaatctg aataccgcta
    12841 aacacaaacg gtctattttt gttaattttt tgcaaagagc gcaaaataac ttattcgaat
    12901 cgctaataat acctttttca tacaaaaaaa tcacctatag aaaatatcac gcacggcaaa
    12961 agcgtgcgta agtattattg ttttttcgat tttttcgatg atgttgcttt atgagcttca
    13021 agaattaatt tcttaccttg gctatcttca atttcaatct taggtggtgc ttccgtattt
    13081 tgatgaagga tagctataat attttcacct tgtgcaatat cttcaaagtt tcctttcaca
    13141 cgtaacttag ccgcatcaac actagtgtca aatactaaga atgtacctaa tgcggtaact
    13201 ctaagatttt taagccctat attgtccttc gttaccgttt tatattgagg tgcttttttc
    13261 ccttttgcag ccataatctt ctcttgatta gtcgcaatat taagaatatt ttgaacttta
    13321 gtcgcttctg ctgtagattg tgcctgttct gttaaatttg gttctccatc aaaaataaca
    13381 tccccaacaa attgcacctc tttaggctca ttttgcaata atggtgcaac gtctttagct
    13441 gaaacaacca aaaataaccg ttcacctatt ttttcaaaac ggacatcaat attggttaat
    13501 tgtgattcaa tttgttcatt aattgtcttg atcgcagttt ctgtctcatt ttgaagcgat
    13561 attttacgtg taatatcaac atcataagca ataaaaccaa cttttaaacg ttgtgataac
    13621 tgctgaagta aattgcccac atttccatca taagaaagac gtaactttgc ctgctcatag
    13681 cgactaattt gagcatcatc attagcgaaa atagtgtttt gagtccctaa gccgattaga
    13741 ccaacaacaa acgttttacc ccaaaagcgc atcattttta tctccaatta ttctc
//
LOCUS       DANLUT010000050        13788 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLUT010000050 DANLUT010000000
VERSION     DANLUT010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13788
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..737
                     /locus_tag="PXB38_001176"
     CDS             <1..737
                     /locus_tag="PXB38_001176"
                     /inference="COORDINATES: protein motif:HMM:NF024808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5353505.1"
                     /translation="NQLSDFFKNHLPEEFGVKYGSALIVNDEGTLASEFLMRYYALSD
                     SIFMENVLKLEMQSAKKALKQLKAFYQSAKLLEQGWWKDAVELFNLGEIPMLIVYMNH
                     FLPLSHKGLMLPLGVSTLPNNRALMGGGSLAIMKQTQKIAACETFFNWFLDNTTQEQY
                     VQLGGSSAKRDIVENQNITKYLPWLPLALKGDFSGVRENSNSRQEAINLRQAENIIGG
                     VVNVYLTTDMNEVEVVNLINARLSQL"
     gene            complement(783..1949)
                     /locus_tag="PXB38_001177"
     CDS             complement(783..1949)
                     /locus_tag="PXB38_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353506.1"
                     /translation="MFNVSRLLIMMFLQYFTQGAWNMTIGAVLADYGMKNSIGSTYAL
                     LGLATLISPLFIGMIADRFLAAQKTIAILHLLNSVILYQIPSTILHNEYSQFFMLIFI
                     VGLLYYPTTALSNSITFQHLSDSRNFPFIRIFGNIGFITAGLIMGYFNIFDQVIVFEI
                     AAFSSLICGLYCFTLPNTPPAARHSVINWKTLLCLDAFILFRDKFFTIFMAVTMLLML
                     TKTSYSAYISVYLQDFQLNAANMMQIAVISEVIFMLLLSLSIKKFGFKWVMGMGIIAW
                     FIRTYLLSIAATATTPLTYIVISLALQGVCWTFFFATGDVYINTRQMIIFERKHKVYA
                     SCFLTILECWLPLILSALSIIMLSRSINCLSLLSNGQNFGYIQVRLHWLPVFYF"
     gene            complement(2025..3083)
                     /locus_tag="PXB38_001178"
     CDS             complement(2025..3083)
                     /locus_tag="PXB38_001178"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HDL5353507.1"
                     /translation="MFMQFDINEHPHRRYNPLKDEWILVSPHRAKRPWSGQVDKAPTD
                     ELPSYDPTCFLCPNNNRVSGEQNPDYKGTFVFSNDFAALMPDSPNSPETSHPLLKIQG
                     VQGLARVICFSPDHSKTLPELPITAIKGIVDTWNEQLEELSKDYVWVQVFENKGAMMG
                     CSQPHPHGQIWANSFLPNEIEKKDKNLVRYYQKNGSNLLLDYAQLEMNDGQRTVIETE
                     HWIAVVPYWATWSFETMLMPKKRHIKRMNELTESEKQDLTYAIKLLTTRYDNLFECSF
                     PYSMGWHFAPFFKDGRDIEHWQLHATFYPPLLRSATVRKFMVGYEMLAETQRDLTPEQ
                     AAQRLASLSDVHYKQKEN"
     gene            complement(3154..4572)
                     /gene="uhpT"
                     /locus_tag="PXB38_001179"
     CDS             complement(3154..4572)
                     /gene="uhpT"
                     /locus_tag="PXB38_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HDL5353508.1"
                     /translation="MAGFFDIKKIPPIGLTTAQQRKLWLRQFLKAFMVVFLAYMAMYL
                     IRNNFKAAQPFLKEQYGMSTLELGYIGLAFSIVYGIGKTALGYFIDGKNTKRIISALL
                     IGSSIAVMLMGFILSAFGSVVGVFIVLWGLNGVFQSAGGPASYSTIYRWVPRTRRATA
                     MGLRNSSHNIGGAIAGGLALWGANTFFAGNIAGMFIFPAVIALIIGIVGLYWGKDDPE
                     ELGWNRSEEIFEEPIEEENAAAETMTKWEIFKKYLLSNPWVWVLCVANVFGYILRIGI
                     DNWAPLYVRETLHFNDFDAVNTILWFEAGAFIGSLFWGTLADFFKGRTAAVGTVCLAI
                     VFFVIDFYRDGTSVMAVNIALFALGAMIFGTLTLIPLSIINLAPKRGVSVANGMAGTF
                     GYLFGDSTAKVGLALIADPKREGLTVFGHNLHGWRDVFIVFNISCVIAVVLLFLVALV
                     EERKIRSIQKAKELGLKVAKVD"
     gene            complement(4599..5570)
                     /locus_tag="PXB38_001180"
     CDS             complement(4599..5570)
                     /locus_tag="PXB38_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HDL5353509.1"
                     /translation="MKVIKTVATTLLLSLFSLSSFADSATQKILDNFQQYPFSQITVT
                     HRAQAGVESRIFPENSLAAINLAINRGVGIIEIDPRLTADGHYVLLHDETLDRTTNVE
                     EVFPQYKEKDGQYAGQVLLSKLTLEQVKQLKLTDGFDGQIHQVPTLKEVLAAAKGRVF
                     LDLDLKEIDVEKLSALIKEFGNDNLLAYNSNAELLKQVTDKTGVIPLPINTPITKDGD
                     PIADFHKFQKMWGDDFKIMHTFMSDVTPELVALADKHKVRLWINTLNDADGAAERFDY
                     SLWKSYLGSGANVFQSDFSIELTRFIELRNSCLTLKNVQGCEVFTEH"
     gene            complement(5882..7552)
                     /gene="glnS"
                     /locus_tag="PXB38_001181"
     CDS             complement(5882..7552)
                     /gene="glnS"
                     /locus_tag="PXB38_001181"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL5353510.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQGYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(7713..8156)
                     /locus_tag="PXB38_001182"
     CDS             complement(7713..8156)
                     /locus_tag="PXB38_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5353511.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVTFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(8207..8782)
                     /locus_tag="PXB38_001183"
     CDS             complement(8207..8782)
                     /locus_tag="PXB38_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL5353512.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            8889..9779
                     /locus_tag="PXB38_001184"
     CDS             8889..9779
                     /locus_tag="PXB38_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5353513.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(9846..10412)
                     /gene="efp"
                     /locus_tag="PXB38_001185"
     CDS             complement(9846..10412)
                     /gene="efp"
                     /locus_tag="PXB38_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL5353514.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            10579..11148
                     /locus_tag="PXB38_001186"
     CDS             10579..11148
                     /locus_tag="PXB38_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353515.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVATGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            11202..12194
                     /gene="epmB"
                     /locus_tag="PXB38_001187"
     CDS             11202..12194
                     /gene="epmB"
                     /locus_tag="PXB38_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL5353516.1"
                     /translation="MQPIQIKPRWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(12294..13697)
                     /gene="asnS"
                     /locus_tag="PXB38_001188"
     CDS             complement(12294..13697)
                     /gene="asnS"
                     /locus_tag="PXB38_001188"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL5353517.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLRLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKSYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
BASE COUNT         4112 a         2859 c         2804 g         4013 t
ORIGIN      
        1 ttaaccaact gtctgatttc tttaaaaatc atttgcctga agagttcggc gtaaaatatg
       61 gctctgcgtt aattgtcaat gatgagggaa cattagcctc tgaattttta atgcgttatt
      121 atgcgttatc agattctatt tttatggaaa atgtactgaa gttagaaatg cagtcggcta
      181 aaaaagcgtt aaaacaactt aaagcctttt atcagtcagc gaaattattg gagcaaggct
      241 ggtggaaaga tgcggttgaa ttgtttaatt taggcgaaat tccaatgctt attgtgtata
      301 tgaaccattt cttaccatta tcacataaag ggttaatgtt gccacttggc gtttctacat
      361 taccgaataa tcgagcatta atggggggcg gctcattagc cataatgaaa caaacacaga
      421 aaatagcagc ctgtgaaaca ttttttaatt ggtttttaga caataccacc caagaacaat
      481 atgttcagtt agggggcagt tcagctaaaa gagatattgt agaaaatcag aatataacta
      541 agtatttgcc ttggttacct ttagcattaa aaggcgattt cagcggtgta agagagaata
      601 gtaatagtcg tcaagaagcg attaatttaa gacaagctga aaatattata ggtggtgttg
      661 ttaatgtgta tttaaccact gatatgaatg aagttgaggt ggtgaacttg attaatgcaa
      721 ggttaagcca gctatgaata aaacagcttg ctattaggtc gccttttcat ttttaaatag
      781 cgttaaaaat aaaataccgg caaccaatgc aatcgcactt ggatataacc aaaattctga
      841 ccattgctca gcaatgagag gcagttgatg ctgcgtgata acattattat agataatgcc
      901 gataatataa gaggcaacca acactccaat atcgttagaa agcatgaagc gtaaactttg
      961 tgcttgcgtt cgaatatgat catttgcctt gtattaatat agacatcgcc tgtggcaaag
     1021 aagaatgtcc aacatactcc ttgtaatgcc aagcttataa cgatgtaagt tagcggtgtt
     1081 gtagcagttg cggcaatcga cagtaaataa gtgcgaataa accaagcaat aatgcccatc
     1141 cccattaccc atttaaagcc aaatttcttg atacttaagc taagcaatag cataaaaata
     1201 acttctgata taactgctat ttgcatcata ttggcggcat tgagctgaaa gtcttgcaga
     1261 taaaccgaaa tataagcact ataagaggtt ttagtcagca ttaataacat cgttaccgcc
     1321 ataaaaatgg taaagaactt atctcggaat agaataaatg cgtctagaca taataaggtt
     1381 ttccagttta ttacgctatg acgggcagcc ggcggtgtat tcggtaaggt gaaacaatat
     1441 aagccacata tcaacgatga gaatgctgct atttcaaaaa cgatcacttg gtcaaaaata
     1501 ttgaaatagc ccataataag tccggcagta ataaagccaa tattgccaaa aatacgaatg
     1561 aatggaaaat ttctactgtc agataaatgc tgaaatgtaa tgctattaga aagtgcggtt
     1621 gtggggtaat agagcaatcc cactataaaa atcagcataa agaattgaga atattcatta
     1681 tgtaatatag ttgagggaat ttgatacaaa atcacactgt tcagtaggtg tagaatagcg
     1741 atagttttct gtgctgccaa aaatctatcg gcgatcattc caataaatag cggtgaaata
     1801 agggttgcaa gtccaagtaa agcataggta gaaccaatgc tgtttttcat tccataatct
     1861 gctaataccg ccccaatggt catattccac gccccttggg tgaagtattg cagaaacatc
     1921 ataattaaaa gtcttgaaac attgaacata tcaaccgtat tttctaaagg aggaatatat
     1981 ttagtggcta aaattgttat ctaaatatat tccgtgttga aaaattaatt ttctttttgc
     2041 ttatagtgaa catcgctcaa agaggctaaa cgctgtgcag cttgctcagg tgtgaggtct
     2101 ctttgggttt cggctaacat ttcataacct accataaatt tacgcactgt cgcagagcgg
     2161 agcagtggcg gatagaatgt agcgtgcagt tgccaatgtt caatatctcg tccatcttta
     2221 aagaatggag caaaatgcca ccccatagaa taagggaaag agcattcaaa taagttatca
     2281 taacgagtcg tgagtaattt aatcgcataa gttaaatcct gtttttctga ctcggtaagt
     2341 tcattcattc ttttaatatg gcgttttttc ggcattagca ttgtttcaaa cgaccacgta
     2401 gcccaatagg gtacaactgc gatccaatgt tctgtttcga tcaccgttct ttgaccatca
     2461 ttcatctcaa gctgagcata atctagcaaa agatttgagc catttttctg ataatagcga
     2521 actaaatttt tatctttttt ctcaatttcg ttaggtaaaa aagaatttgc ccaaatttgc
     2581 ccgtgtgggt gaggctggga acagcccatc attgcccctt tattttcaaa tacttgcacc
     2641 catacataat ctttgcttaa ttcttcaagc tgctcattcc aagtatcaac aatgccttta
     2701 attgcggtaa taggtaattc aggcaaggtt ttgctgtgat caggcgaaaa gcagatgact
     2761 ctcgccagcc cttgaacacc ttgaatctta aggagtgggt gagatgtttc cggcgagttg
     2821 ggcgaatccg gcattaaggc ggcaaaatca ttgctgaata caaaggtgcc tttatagtcc
     2881 ggattttgct cccctgaaac tcggttgtta ttcgggcata aaaaacaagt gggatcataa
     2941 ctcggtaatt catcagtcgg tgctttatcc acctgcccgc tccaagggcg tttggctcgg
     3001 tgtggagaga ctaaaatcca ctcatctttc aacggattat aacggcgatg agggtgttca
     3061 ttaatatcga attgcataaa catatcctga ttataataga cggaacagac cgcttgccta
     3121 aacaagcggt catttttcat tgaaaatttg caattaatct acttttgcga cttttaatcc
     3181 taattctttt gctttttgaa tactacggat tttacgttct tcaacaagag caacaaggaa
     3241 taaaagtacc acggcaatca cgcaagagat gttaaagacg atgaatacat cacgccaacc
     3301 gtgtaaatta tgtccgaata cggttaaacc ttcacgtttt ggatctgcaa ttaacgctaa
     3361 accgactttt gcggtggaat cgccaaataa gtaaccaaat gtacctgcca taccgtttgc
     3421 aacgcttacc cctcttttcg gtgctaagtt aataattgaa agtgggatta aggttaaagt
     3481 accgaagatc atcgcaccta aggcaaataa tgcgatattt acagccatta cacttgtgcc
     3541 gtctcggtag aaatcgatca caaagaacac aatcgctagg cagactgtac ctactgcggc
     3601 agtacgacct ttgaagaagt cggctaatgt tccccagaat aagctaccga tgaatgctcc
     3661 ggcttcaaac cataagatag tgtttactgc atcgaaatca ttgaagtgta aggtttcacg
     3721 aacgtagagt ggtgcccagt tatcaatccc gattcgtaaa atataaccga aaacatttgc
     3781 cacacaaagc acccaaaccc aagggttaga caacaggtat tttttaaaga tttcccattt
     3841 tgtcattgtt tcggctgccg cattttcttc ttcgattggc tcttcaaaga tttcttcact
     3901 gcgattccag cctaactctt ccgggtcatc tttaccccaa tacaagccaa caataccaat
     3961 gataagtgcg atcaccgcag ggaaaataaa catacctgca atgttaccgg caaagaaagt
     4021 attggctccc catagggcta aaccaccggc aatagcacca ccgatattat gcgagctatt
     4081 ccgtaaaccc attgcggttg cacgtcttgt tcttggtacc caacgataaa ttgtgctata
     4141 ggaagcaggg cctccggcag attggaacac cccgttcaat ccccataaca caatgaatac
     4201 acctacaacc gaaccaaagg cacttaagat aaaacccatt agcataacag caatagatga
     4261 tccaattaat aaggcagaaa taatgcgttt ggtatttttg ccgtcaataa agtagcctaa
     4321 cgctgtttta ccaatcccat atacaatcga gaaagccaag ccgatatagc ccaactcaag
     4381 agtggacata ccatattgtt cttttaagaa aggttgtgca gctttaaagt tattgcgaat
     4441 taaatacatc gccatataag ctaagaatac caccataaag gctttcaaga actgacgtag
     4501 ccatagctta cgttgttgtg ctgtggtcaa acctattggt gggatttttt taatatcaaa
     4561 gaagccagcc atataaactc caaattatcg gttaaagatt aatgttcggt aaatacttca
     4621 caaccttgta catttttcaa ggttaagcaa gaattacgca attcaataaa acgggttaat
     4681 tctatagaaa agtcggattg gaatacgttt gctccagagc ctagataact tttccataag
     4741 gaataatcaa atctttcggc agccccatcg gcatcattga gtgtattgat ccaaagacgc
     4801 actttgtgct tatcagctaa tgccactaat tcaggggtta catcagacat aaaagtatgc
     4861 ataattttga aatcgtcccc ccacattttt tggaatttgt ggaagtctgc aatcggatcg
     4921 ccatctttgg taatcggggt attaattggc agaggaatta ctccggtttt atctgtaact
     4981 tgttttaaaa gctcagcatt gctgttgtaa gccagtaaat tatcattgcc gaattcctta
     5041 attaacgcag acagtttctc tacatcaatt tctttcaaat ccaaatcaag aaatactctg
     5101 ccttttgcag cggcaagcac ttcttttagg gttggcactt gatgaatttg cccatcaaaa
     5161 ccgtctgtca attttaattg ttttacctgc tctaacgtga gcttagaaag caaaacctga
     5221 ccggcatatt gaccgtcttt ctctttatat tgtggaaaga cctcttctac gttagtggtt
     5281 ctatccagcg tttcatcgtg taataaaacg tagtgaccat cagcggttaa acgaggatcg
     5341 atttcaatga tgcctacgcc ccgattaatc gctaaattaa tggcagctag agagttctct
     5401 gggaaaatac ggctttctac accggcttgc gctcggtggg tgacggtaat ttgagagaaa
     5461 gggtattgtt ggaaattatc caaaatcttc tgtgttgcgg agtccgcaaa actagatagt
     5521 gagaataaag atagtagcaa ggtggttgct actgttttga ttactttcat agtaactcct
     5581 taatatagtt tggcgaccat ctcaaaataa ttgaaacgtt tcaattagag aaggtggatt
     5641 ttgtgactga gatcacaaat ttaaacattg gtctgtattt ttgagagatt ttgtttgaaa
     5701 ctgccggcaa attcgcttaa ccttaaggca acaagaataa gtgttgtacc tagcaaccta
     5761 acacataaat ttgctttccg agtggcccca agaattgggg ctttttttat gcttgatgag
     5821 tcgttttgag agtaaaaaaa ataccagcat atttgctggt atttgaatga agagagttag
     5881 attagaacgc tacgctttct tttaagctga cagttaagtt aaatacaagg ttgtctgccg
     5941 aaccatcttt gctgtctaag cagtagtaac cttcacgctc gaattggtag ccttgttccg
     6001 gtttggcgtg agctaaactt gactcaacaa aaccatgctt aaccactaat gattcaggat
     6061 ttagcaccgc attgatgtct tcttccgccc ccgggtttgg tactgtaaat aggcggtcgt
     6121 aaatgcggaa ctctgccggt ttgttatctt cagcagatac ccaatgaatc acgcctttta
     6181 ctttgcgacc atcagccgga tttttgccca atgtatccgg gtcgtatgtg caaaaaatag
     6241 ttgaaattcg accgcttgca tctttttcca cacgctcagc tttaatcaca taggcattgc
     6301 gtaaacgaac ttctttgcct aagactaaac gtttatattg cttattggct tcttcacgga
     6361 agtcggcttc atcaatataa atctcacggg tgaacggtaa atcacgctcg ccaagctctg
     6421 gacgatttgg gtgattaggg gcttttaata tttccttttc accgaagttt tcaatcacca
     6481 ctcgaaccgg gttaatcacc gccatcgcgc gtggtgcgtt ttcatttaag tcttcacgaa
     6541 tgcacgcttc aagggcagag tattccacca cgttatcttg cttggttacc ccaatacggc
     6601 gacaaaattc acgtaaagac gctggggtat aaccacggcg acgtaagccg gaaatggttg
     6661 gcatacgagg gtcattccaa ccatcaacaa tgccgtctgt gactaatttt aataatttac
     6721 gcttagaggt taaagtacct tctaaattta aacgtgaaaa ttcgtattgg tgcggtaacg
     6781 gtctttcaat cgaaatattg tccagcaccc aatcatataa gcggcggtta tcttggaact
     6841 ctagcgtaca tagcgagtga gtgattcgct caatcgcatc ggaaatgcag tgggtaaaat
     6901 cgtacatcgg gtagatgcac catttatcac cggtttgatg atggtgagca aatttcacac
     6961 ggtaaagcac cggatctcgc atcacaataa acggggacgc catatcaatt tttgctctca
     7021 agcaggcttt cccttccgca aactctccgt ttttcatttt ttcgaataac gctaagtttt
     7081 cttccacgct acgatcacgg taagggctgt ttttgcccgg ctcggttaaa gtaccacggt
     7141 attcacgcat ttcatcaggc gataattcat caacataggc taatcctttg ttgattaact
     7201 caatcgcata gccataaagc tggtcaaaat agtctgaggc ataacgaggc tcaccctccc
     7261 atttaaaacc tagccactcc acatcttgct taattgaatc tacatattcc acgtcttctt
     7321 taaccgggtt ggtatcatca aaacgcaagt tacataaacc gttataatct tgagcgatac
     7381 caaaatttaa acagatagat ttagcgtgtc cgatatgcaa ataaccgttt ggttcaggtg
     7441 gaaaacgagt gtaaacattg ttgtgctttc cgcttgctaa atcttcatca ataatatggg
     7501 taataaaatt ggctcgagtg ccagtttctg ccgttaaaat ttcttcgctc atagttctct
     7561 ctaaatgtat caataaaaat aacggattat tctacactta attgaaacag acttaaagac
     7621 taaagcaaaa ttcctcggtt tcctccaaag aattttgctg ttttagtaag atgcaatgga
     7681 attgcaaatt tttagctaaa tttaaccgct tgttattgcc tgatttcacg gctttcgctg
     7741 atcataaaat tcgcaatccg tttggcaatc cgccatttac cctcttgttt aacataggta
     7801 tcggcataac gcacgctgtg atcgtgcaag atctctttgc cctctttggt ttctaccagt
     7861 ttcaccgcac aatagttgat cgctgtggcg ttattttcat caataaaagt cacggtatgc
     7921 tgaccgttta aatgataaac gctgtgaaac ggggttaaaa aggtggtaaa cacctgttcg
     7981 atttctgcca cgccgtgcat ttcaaacacc aattttccgc cgatgtaggt gtttacgacg
     8041 gcatcttgcg tgaaaagcgg catctgctcg gcaacctttt tttcatcggc aaggttagag
     8101 aatgtatcta ctaaatcttt tagtgctaaa cgatcttgga tttgttgtaa gttcattgtg
     8161 ttttccttct gatttttgca aattttcttt ggtttttcac cgcttgttag gctgcaatac
     8221 caacactttc acggatttcg ctgttttcac gcaaaatgcg agccacaaaa tcggcaatgg
     8281 atttgcggga aacgctgtgt cctttgaacg gttcgccttt gtgagtcagc tgatattgca
     8341 cttccgaacc gttggtaaac cagcccgggc ggacaacggt ataatccaac tcgctggctt
     8401 caatcacggc tgccgattgg cggtaaggct ctaaaattgc cccgtgatct tcgccggttt
     8461 cgccataaat ccccattgag ctaatccaaa ccaagcgttt tacctgagct tcattcattg
     8521 cgttcaccac atttcccgcc atcgctttta agtcgccggc aagtccagcg taaacggcat
     8581 caacgccttg cattgcttgg gttaatgcgt ggaaatccaa cacatcgcct tgcacaattt
     8641 tgacgcgttc agtttcaaat ttcgctactg attgcggacg acgggcaaaa agggttaatt
     8701 gcacattatt gtcttttagc agttcaggaa tcacgacatt cgctaggcta ccgcttgctc
     8761 ctaaaattaa gatctgtttc attgctgttc tccattgaat gaagtcagta tagcggtgta
     8821 gattgcattt gattagtagg gtaaaatcgc ttgaagtaat gagaaaaatt cattaataag
     8881 gtggttaaat gaaagaaaac ctcaacgatt taagagcttt tttgttggta gcacaaacga
     8941 gcagttttac caaagcagca gcacagatgg gcgtgtcgca gtcggcgttg tcgcacagca
     9001 ttcgggggat tgaagaacgg ttgcaaatca agctgtttca tcgcaccact cgtagcattt
     9061 caaccaccga ggcaggggag aggctgtatc aacggctgtt accgctgttt gatgaaatcg
     9121 accaagaagt aaatgggctg agtgagtttc gcaatgcgtt aaaaggcggg ctgagaatta
     9181 acggtaatga acacgttttc cgtgatgtgc tggcagataa attcgctgag tttgtcaaac
     9241 gttaccctga agtagcattg gagctagtgg cggaagatcg ctttgtagat attgtcgccg
     9301 agcgttttga tgccggtatt cggcttgggg cagatgtggc gaaagatatg attgcactac
     9361 gcatttcgcc cgatgtgaaa atgaccgcag ctgccagccc caactatttg gcacagcacg
     9421 gcacgccgaa aacgcccttt gatttaaccg aacatcattg tctcaaacat cgtcttgcga
     9481 cattgggcgg cattctggcg tgggaatttc gggatcccat caccaagaaa atcgttaaat
     9541 ttcaaccgca gggcaatctt actgccaata acggcttctt gctgcaacac tatgccaaac
     9601 aaggtttagg cattctttgg agtccgcaag acagcattca aaccgagctg gataacggca
     9661 gcctcgtgcc gattttaacc gactgggcaa tgcagtatga gggctatcat ctctattacc
     9721 ccaaccgtcg ccaaaattcg cctttgctga aagcgttaat tgatgtgctg agaggatagg
     9781 taaaaatgag cggtcgtttt tagcaaaaaa ttgaccaaaa aacgaccact tgtagagaag
     9841 ctaaattatt tcacacgaga aacatattcg cctgaacggg tatccacacg gataacttca
     9901 ccgatttgaa cgaataaagg cacgtttacc acagcaccgg tgcttaatgt tgccggttta
     9961 ccgcctgtac ctgcagtatc gccttttaag cccgggtcgg tttcgacgat ttctaactca
    10021 acgaagtttg gtggtgtgac tgcaattgct gaaccgttcc ataaagtcac gatacattct
    10081 gcattatcaa ctaaccattt tacgttgtcg cctaacgctt tttcatctac cgagatttgt
    10141 tcaaaggttt cagggtgcat aaagtaccag aaatcaccat cgctgtaaga gtagttgtag
    10201 ttagaatcta ctacatctgc tgcttcaacc gaagtgcctg atttgaagtt gatctctaat
    10261 actttgccag agattaattt acggatttta gtacgggtaa atgcttgacc tttacccggt
    10321 tttacgaatt cgttttcaac aattacacaa ggttcgccat cttgaataaa ttttaaacct
    10381 tttttaaagt cgttagtgct gtagctagcc attatttcct caattattta aaaaataaca
    10441 ataaattaac aaattttgaa cccaacccta ttgggtttgt caaaaagagc catataataa
    10501 cctaaattca caaaattagc gaaagatctc ttgcgatttt tgctataatt tttcaaactt
    10561 tattgataag gaatgcgaat gaaaaaactg attactcttt ctgcgatttt agccgtttct
    10621 gttgcaaccg tggcagaggc aaaacgtggc ggtgggagct tccgttcagt tagcccgtca
    10681 aaagcggtag caactaagcc ggtagcttct caaaaatcaa ccacaaatca gcaaacgcaa
    10741 caaaaagatg ctacttttgc caatacgcca aacagtgcaa ctgcccagcc acaagtgcgt
    10801 caaggcagca cgatggcaaa tgtagcgatg ggggcagcag ccggttatat tttaggtgat
    10861 atgatgtcat caaatgcaca tgcaaatcag cctagccagc ctgcggatgc aaatgcacaa
    10921 gcggtcaatt ctgcacaaaa tgttgcaact ggagcagttc ctgctattgc agaatttaag
    10981 agtattggcg gtcaaatcga tccgttttta gtagaaaaaa ccgatggtta tcgccgttat
    11041 tgtatttcag gcgtgcaata cctagtcgct gcacaaggtg tacaaacctc accaactgta
    11101 atggttaatc caaatggcac gccattacaa tgtaacttaa ttccataatt atttttattt
    11161 gcgggcaggc aaaaacctgc cccttgtatc tacaatattc aatgcaacca attcaaatca
    11221 aaccgcgttg gctaaccgag ttggctcaag cctttaataa ccctatcgac ttattacaat
    11281 ttcttgaact caatccaaat gattttgagg gcgatatagc tgcccgtaaa ttatttgctc
    11341 ttcgagtgcc aagaatgttc gccgaaaaaa tggaaaaggg taacccaaac gatccgcttt
    11401 ttttgcaagc aatgtcttta caggcggaat ttattgaggc agaagggttt gtggtagatc
    11461 cattggaaga gcaacaaagc ccagcaccga atattttaca taaataccat aaccgtttgt
    11521 tatttatgct aaaaaacagt tgtgcgatta actgccgcta ctgttttcgc cgtcatttcc
    11581 cttatgagga agtgaaaagc ggtaaagctg tgtggcaaca gggactaact tatattgctg
    11641 agcatcccga gctggaggaa gtgattctgt ccggtggtga tccgctgatg gcaaaagatc
    11701 aggacttaga ttggatatta acgcaattag agcagatttc gcatatcaaa accctgcgta
    11761 ttcattcacg cttgccggtc gttattccca atcgaattac gacagaatta tgtgaacggt
    11821 tatcaaaatc tcgcttgaat gtcgtgttgg ttacccatat taatcacgcc aatgaaattg
    11881 atgctgtttt tgcaaacaaa atggctcaac tgaaaaaagc cggcgttgta ttgctgaatc
    11941 aatcggtgat gttaaaaggt gtaaacgata atgctcaaac cttaaaaagg ttaagtgata
    12001 aactttttga atatgggatt ttgccttact atttgcattt atttgataaa gtggcagggg
    12061 cgagccattt ctatattgaa gatgaacagg ctggtgagat ttaccgagaa ttacagcgta
    12121 tcacttcagg ctatcttgtg ccaaagctgg caagagaaat agcgaaagag ccaaataaaa
    12181 ttttgaaagg ttagcttaaa cagaaatcaa gaaacaaaag gcgaaaatgg taaaattttc
    12241 gcctttttta accgcttgtt gcaagcggtt aaattctctt acttttttgc aaattagaag
    12301 ttcgcattgc gtggagcacg tgggaatggg attacatcac gaatgttttg taacccggtt
    12361 acatacacga ttaaacgctc gaaacctaaa ccgaaacctg agtgtggcac tgtaccgtat
    12421 ttacgcaaat cacgatacca ccagtaatct tcagggttta agcccatttc attcatacgc
    12481 tgatctaaca cttctaaacg ttcttcacgt tgagaaccac cgataatttc accgattccc
    12541 ggagctaaaa cgtccattgc ggcaaccgtt ttgccgtcat catttaaacg catatagaag
    12601 gctttaatgt cttttggata gcttttcacg accaccggcg atttaaagtg ttcttcggct
    12661 aagaaacgct cgtgttcaga ggaaagatcg attccccaag acaccgggaa ttcaaattct
    12721 ttgccggatt tcaataagat ctcaatcgca tcggtgtaat ctacttgagc aaatggcgaa
    12781 ttgataaagt tttctaaacg actaatcgct tctttatcaa cgtgtttaac gaaaaattcc
    12841 atatcatctt tacgttctgc aagcaccgct ttaaacacat atttcagcat atcttcggct
    12901 aattttgcat tgtcgtttaa gtcggcaaag gcaacttccg gctccatcat ccagaattct
    12961 gcaagatggc gagttgtgtt tgagttttct gcacggaatg tcggaccgaa agtataaact
    13021 ttacttaagg cacacgcata ggtttccgca tttaactggc cggatacggt taagaacgat
    13081 tctttaccga agaaatcttg gttaaaatcc actttgccgt tttcgccacg aggtagattt
    13141 tctaaatcca gcgtagaaac acggaacatt tcacctgcac cttcagtatc tgaggcggta
    13201 attacaggtg ttgctaccca atagaaacct tgctcgtgga agaaacggtg gatagcttga
    13261 gctaaacagt gacgaacacg agcaactgca ccgattaagt tcgtacgagg gcgtaagtga
    13321 gcgacttcac gcagatattc gatagagtgg cgtttcgctg ccattgggta ggtatcagga
    13381 tcttccaccc aaccaagcac ttccacttta cttgcttgta attcaacggc ttgaccttca
    13441 gcaggggatt ccacaacttt accggtcacc accacagagc aacctgcggt taaacgtaat
    13501 acttcggcat tataatttgg tagatcgtta ttaataatcg cttgaattgg gtcaaagcaa
    13561 gaaccatcgt aaacgctcaa gaaagataaa ccggcttttg aatcacggcg ggtacgcacc
    13621 caaccacgca ctgtcgcttc ttcacctacc gctatcttgc cggataggat ttccgaaact
    13681 gttggaaatt tagacattga atacctcaaa ttctttattg tgagttttaa tataagaaac
    13741 gttccgtatt ctacaagaaa atagggggaa atataataat tttacgga
//
LOCUS       DANLUT010000051        13734 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLUT010000051 DANLUT010000000
VERSION     DANLUT010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13734
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..283
                     /locus_tag="PXB38_001189"
     CDS             <1..283
                     /locus_tag="PXB38_001189"
                     /inference="COORDINATES: protein motif:HMM:NF019151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL5353518.1"
                     /translation="TSIEHYLAQNRTSDSIVHNFGNLCLISPHQNSALSDYETTTKRS
                     FYEGASKRFDCMSLKQAIMLSKENWTEKDIEEHCEDMKKLLDTKPSQNK"
     gene            complement(426..608)
                     /locus_tag="PXB38_001190"
     CDS             complement(426..608)
                     /locus_tag="PXB38_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353519.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            758..1798
                     /gene="selD"
                     /locus_tag="PXB38_001191"
     CDS             758..1798
                     /gene="selD"
                     /locus_tag="PXB38_001191"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:803..805,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL5353520.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1798..2271
                     /locus_tag="PXB38_001192"
     CDS             1798..2271
                     /locus_tag="PXB38_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL5353521.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2261..3469
                     /gene="ubiH"
                     /locus_tag="PXB38_001193"
                     /gene_synonym="visB"
     CDS             2261..3469
                     /gene="ubiH"
                     /locus_tag="PXB38_001193"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL5353522.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3732..4964
                     /locus_tag="PXB38_001194"
     CDS             3732..4964
                     /locus_tag="PXB38_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL5353523.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            5031..6017
                     /locus_tag="PXB38_001195"
     CDS             5031..6017
                     /locus_tag="PXB38_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5353524.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKAFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNALPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVEGIGVFKEILSE"
     gene            complement(6058..6468)
                     /locus_tag="PXB38_001196"
     CDS             complement(6058..6468)
                     /locus_tag="PXB38_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL5353525.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6534..7844)
                     /gene="eno"
                     /locus_tag="PXB38_001197"
     CDS             complement(6534..7844)
                     /gene="eno"
                     /locus_tag="PXB38_001197"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL5353526.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(8259..8978)
                     /locus_tag="PXB38_001198"
     CDS             complement(8259..8978)
                     /locus_tag="PXB38_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5353527.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINGFSTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADGDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            9155..9433
                     /locus_tag="PXB38_001199"
     CDS             9155..9433
                     /locus_tag="PXB38_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5353528.1"
                     /translation="MSVLSDVKKTAQRDWHRADILAELRKKGWSLRTLADEGNVSYNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            9477..11312
                     /locus_tag="PXB38_001200"
                     /pseudo
     CDS             9477..11312
                     /locus_tag="PXB38_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251263.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            11360..12241
                     /locus_tag="PXB38_001201"
     CDS             11360..12241
                     /locus_tag="PXB38_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5353529.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTGVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACKGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            12252..12500
                     /locus_tag="PXB38_001202"
     CDS             12252..12500
                     /locus_tag="PXB38_001202"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353530.1"
                     /translation="MTCFRHWTQRVTDGTEDLFWLDELLVGKDERDGSFTLSIFDPDI
                     DDFLLYEKVKTRKDWEIAYRKAREIINEQDIDCRSFRV"
     gene            12510..12830
                     /locus_tag="PXB38_001203"
     CDS             12510..12830
                     /locus_tag="PXB38_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353531.1"
                     /translation="MQKVFSEKAGEMMNPFNAYIHDSLVKLEIATLECEALDLEIERV
                     EFEAASPPRLVLRDNRKTQDFVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            12833..13024
                     /locus_tag="PXB38_001204"
     CDS             12833..13024
                     /locus_tag="PXB38_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353532.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAKRLGVEAKTIRFMSSPAH
                     NKRVKYNGKAVRTVKVGLE"
     gene            13037..13654
                     /locus_tag="PXB38_001205"
     CDS             13037..13654
                     /locus_tag="PXB38_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL5353533.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSAEKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
BASE COUNT         3964 a         2642 c         3283 g         3845 t
ORIGIN      
        1 aacatcaata gaacattacc ttgctcaaaa tagaacaagt gattcaatag ttcacaattt
       61 tggtaatctt tgtttgattt ctccacatca gaattcagca ttaagtgatt atgaaacgac
      121 tacaaagaga agtttttatg agggagcaag taaacgtttc gattgtatga gtttaaaaca
      181 agctattatg ctttcaaaag aaaactggac agagaaggat atagaagaac attgcgagga
      241 tatgaaaaaa cttttagata ctaagccttc tcagaataaa taaattttca caagcggtgc
      301 aactttgcaa aaacttcggt attatgtagc agttgcacaa aaccccaaat tcattaaaac
      361 cgcttaaaaa tgaaatgccc taaactgatt tttcagtcta gggcatttat tatcacatat
      421 tatggttaat agggaaaact cacatcattg ttatgctggt gatatttttg ccaaaatgcg
      481 tgatattgtt ttttcaccga tgtgtttaat aaaaacggga ttatcaagac ataggtcggg
      541 caattccata gcattgcacg ttgtgtatcc gtgccgattt tggtgcgtaa gtaaccaaac
      601 tgatacatta gacccaatcc aaccgtcacc cattctaata gcataataac taaggtcgca
      661 tcattaaatt aaaagctcat tttttgcaaa aaatttccca aattccaccg cttgttggcg
      721 tacaataggc ataattttga tttacgatgg aggcagaatg tctgaaccga taaaacttac
      781 gcagttcagc cacggggcgg gttgaggctg taaaatttcg cctaaggtgt tagggacaat
      841 tttacaaact caattagaac aatttgtcga tccgaattta ttggtaggca atgaaacggc
      901 ggacgatgct gccgtctatg atttagggaa cgggcaggcc attatcagca ccaccgattt
      961 ctttatgccg attgtggacg ccccgtttga tttcgggcga attgctgctg ccaatgcgat
     1021 tagcgatatt tatgcgatgg gtggcaagcc gattatggcg attgcgattc tgggctttcc
     1081 ggtgaataaa ttgccggctg aagtggctca acaaattgtc gaaggtgggc gttttgcgtg
     1141 ccagcaagcc ggtattgcct tggcgggcgg gcattcgatt gattcgcccg atccgatttt
     1201 cggcttggct gttaccggca ttgtgccgac cgaacgggtg aaacgcaatg cctctgcggt
     1261 ggctgggtgt gagctgtttt taaccaagcc tttggggatt ggcattctaa ccacggcaga
     1321 gaaaaaaggt ttgttgaagc ctgaacatca acatctggca agcgaggtaa tgtgccaaat
     1381 caacttgatt ggttcagcgt tttccgaact gcctgaagtc acggcaatga ctgatgtaac
     1441 cggttttggc ttactcgggc atttaagcga ggtgtgtcaa ggctcgggct tacgggcgga
     1501 ggttgatttt gaggatattc aagtccttga tggcactaag gagtatattg cattgggagc
     1561 agttccgggt gggacaaatc gcaatttcga cagctatggg catttgattt cggcaatgac
     1621 ggacgagcaa aaagcgattt tgtgcgatcc gcaaacctct ggcggtttat tagtggcggt
     1681 gctgccacaa gcggtcgaaa aagtgcaaca aattgcaaat cgggcaaatg tgccgttatt
     1741 ccacgttggc agattgctgg aaatggaaca gggcaaacca cggattgagg taatttgatg
     1801 tttaaaccaa atgtaacaat ggcttgcgtg gtgcattgta agggaaagtt tctgtttgtg
     1861 gaagaaattg aatatggcaa acgtaccctt aaccagccgg cagggcattt agaaaaagat
     1921 gaaaccttgc tggagggggc aagccgtgag ctgtttgagg aaaccggtat tcgggcagaa
     1981 atggcaaatt tggtgaaaat ttatcaatgg caagcccctc gttcacaaac cgatttcttg
     2041 cgttttctgt tttcggtgga actggaagag tggctggagc cgaatccgca agatgcggat
     2101 attacccaag ccctttggct tactttagca gaatttgaag actacattca gcaacaaggg
     2161 caatgtgcca gaagcccgtt ggtggttcaa tcggtcaaag attatttaag cggtgagcgt
     2221 tatccattaa gtttgttgaa tgcgtttgaa tgggcgagaa atggaaaata aaacaacaac
     2281 ccaatttgat gtggtgattg tgggcggggc agtgaccggc tcggtgctgg cattggcgtt
     2341 aagtagtttt actcatcaca aaatctcgat tgcgatagtg gaaaaatcgc tgccggacta
     2401 tgaacagcaa ggcggttttg atgctcgcag tattgcctta gccgaaggca gtttgcaaaa
     2461 aatggggcaa atcagaccgc ttgcaggctc aagtttaggc gagatgatta gcgaaatcgg
     2521 cacgccgatt cagcaaattc aagtagcgga taaagggcat tttggtaaaa cgaccttgaa
     2581 agcaagcgag cagaatgtgg ctcaactggg tatggtggtg gaacttgcaa aattcggcag
     2641 aaaattgacc gcttgtcttg cacagcaagc taatattacg cttttttgcc cgaatcaagt
     2701 ggttggcatt gagcgttccc aacaacattg tggattgagc ttgaaaaatg gtgagaaact
     2761 aagctgttcc ttgctggtgg cggcagatgg tattcaatct cagattgcaa aacagtgcgg
     2821 tgtggaaacc gtaaaagtaa gggattatgc acaatcggca attatcgcca atgtggaact
     2881 gagtgaatct caccaaaatc aagcctttga atattttacg cctcaaggcc cttttgcttt
     2941 attgcctttg agcggaaata tgatgtcgtt ggtgtggtgt gtgaaagagc cgaacgagtt
     3001 aatccaactt tcagacagtg aatttttagc ccgtttgcaa caacaatttg gttggaagtt
     3061 agggcaattt gttcgagtga gcaagcggtt tgtttatccg ctcattttgc aaaaagccca
     3121 gtcgcatatt caccaccgct tagcagttgt cggcaatgcc gcacaaatgc ttcacccggt
     3181 tgctgggcaa ggtttcaact taggcttgcg tgatttgact accttagcgg aattagtggc
     3241 tttggcgttt aatcaaggga aagatatagg cgaattttcg ctcttatcaa cttttgagaa
     3301 tgagagaacg caagatcaag ccagaatgat aaatgctaca agcggtctga tttcgctttt
     3361 ttgttgcgaa atgttaccag ttcaggttgt gaggaattta gggttattaa cggtttccca
     3421 ttcaaaaata gccagagatt ttgttgctaa tcaggcatta ggttggtaaa aaacacaaaa
     3481 gcagcaattt tctatttgac actgttttta aaaaggcgta ttatccagcc cgtttaaaaa
     3541 tctcaccaaa gccttgaatg caaattcaag gctttttcct ttttagtgaa agcctatgaa
     3601 ttttgtttgc cgtaaaatcg gcaaaaaaat tttgcctaaa attcgcaatc gtttgcgaaa
     3661 taggtttata gcgttgtttt catctgggta actgcaatgg ttacatcgca atacatcaaa
     3721 gagagtaaaa aatgaccaca gaaaatatga gtacgccaaa gcaggcgttt atcgggctgc
     3781 aaatgctgtt tgttgcattt ggggcgttag tattagttcc gctgattacc ggtttagatc
     3841 ctaatgttgc ccttcttacc gccggtgtcg gtacgttaat cttccaaatt tgtactaaac
     3901 gtcaagttcc tgttttcctc gcatcaagtt tcgcttttat cgctccaatc caattcggtg
     3961 ttcaacaatg gggaattccc gtcacaatgg gagcattgct ctgttccggt tttatttata
     4021 tggcattatc tgctttagtg aaagcgaaag gggtgaatat tctgcataaa tacttccctc
     4081 caatcgtgat tggaccggta attatggtga ttggtttagg tcttgctcct gttgcggtgg
     4141 atatggcaac gggtaaatcg gcgaatattg cctataacac cgctattatt gtttcaatga
     4201 taacgctggt aactacgctg attgtggcgg tgtttgcgaa agggctatta aagctcgtgc
     4261 caatattagc aggtttaacg gtgggatata tcttgtctgt ttttatggga ttggtggatt
     4321 ttactaaagt ggttgaagct ccttggttta gtctaccgaa agtttccgca ccggaattca
     4381 aattagatgc aatcttgtat ttattaccta tcgcacttgc tccggcagtc gaacacttag
     4441 gcgatgtaat ggcaatcagc caagttgccg gtaaagattt tatgaaaaaa ccggggttac
     4501 accgcacgct tttaggtgat ggtttagcaa cttcagcagc tgcggcatta ggtggcccac
     4561 caaatacgac ttactctgaa gtaaccggtg cggtaatgct aaccaaaaac ttcaatccga
     4621 aaattatgac ttgggctgcg tgctgggcta tcgctttctc attctgcgga aaaatcgggg
     4681 cattccttgc cactatccct acttttgtga tgggcggtat tatgatgttg ctgttcggtg
     4741 cagttgcggt tgtggggatc aatactctaa ttaaagctaa agttgattta agcattccac
     4801 gtaatctttg tattgcttct gtagtaatga cattcggtat tggcggtatg ttaattaaca
     4861 tcggcgaatt ctcattaaaa gggatcagct tgtgtgcatt agtcgctatt gtacttaaca
     4921 ttgtattacc aaaagaaaaa gtagaagatt ctgctgctca ttaatcaaag gacgctgtgg
     4981 cgtccttttt gctaataacc ctctatttgt aaataaaaag gaataacact atgcaaaaac
     5041 tcacattttc accaccactt ttaaatacgc cttgcccttg gtgttcggag ttagagagct
     5101 tgcgtgaact ttatgcgtgt gaatataccg gtgcggtaac aacccgtact tcaatgcctc
     5161 aaccatatcc acacgattgg gcgaagaacc aatatgtact ctttgattcc aacgcacaga
     5221 aaacagcaag tgtgaatact caagatgcaa ctagcttaca aacagcaagc cttaacacca
     5281 tcggtttaag cccaaataat ctggatacca ccatcagctt tgtacgcacc atttcaaatg
     5341 agctgacagc gccatcaagc aaagcattta ttatttcggt gtttggttca cccgaagagg
     5401 tgggggaatg ttatgaaaaa attgttgctt tccaaactga agtgaaaatg cctttggcaa
     5461 tggagattaa tatctcttgc ccgaatattc cgggtgaaat ttcgcctgct tattccgcag
     5521 aagaattatc acattacttg cacgcactac aaacttcgct aaaaaaactg gctcaaggtg
     5581 ataatgcttt accaatcggg attaaaattc caccttttac ttaccaaaat caatatgatg
     5641 aattaatcaa aggcttatta caagcggtcg aaaatggcga aaatttacca atttccttta
     5701 ttacttcaac caatacgctt ggctcatcgc ttgtcttaaa tgctggcaaa gcggtattaa
     5761 attcagaagt gggaacgggc gtaggcggaa tggcaggaac ggcaatccat gcactttctt
     5821 tggggaatgt ttacacgatt cgccaaatgt tagatcaaga gcctaagctc aaacatcttc
     5881 aaattattgg tgtgggcggc gtgaatgata aagccggctt tgagcgaatg aaatcggttg
     5941 gggcagactt tgtggggtta gctaccgcat taggggtgga aggaatcggc gtttttaaag
     6001 agattctgtc tgaataatga agaggagggc gtgcattgca cgcccgaata aatgaaatta
     6061 gcctaaccat ttctccacta attcattagt ggtttcttta tgtacccaca tactgccaag
     6121 ttccggcatt gggaatttgg tgtggttgta gccgacaaat tggcggaaat caaacacggc
     6181 gtgcgggtag ccgttgatca gtaaaaaggc ttgatagccg tcttcactcc agcaaatttc
     6241 taaacggcga ggttctttta atgaattttg ctcaatatcg ctgacccgaa acacaaataa
     6301 actatccact accggctgtt cggtttggtg taagtccatt gcataaaagt agccgctttc
     6361 ttcatcaatt tcaaacatca ctactaaatg ttcgtgctgg gttgaatgag cgccattacg
     6421 gtaaggttcg ttcagtagaa tatgagcagt taaaacagag tagagcatta aattatcctt
     6481 ataagtaaaa tgccaccgat ttctcagtgg catttaaata tttaatcagg caattacgct
     6541 tgacctttaa tctctttacg gccgttgaac ggagccggtg taccagcacg ctctaacgct
     6601 tcttcgatac ggattaactg gttgtatttc gctacacggt ctgaacggct cattgaaccg
     6661 gttttgattt gacctgctgc tgtacctact gctaaatctg caatggttgc atcttcagtt
     6721 tcgcctgaac ggtgagagat aactgcggtg taacctgcat ctttcgccat tttgattgca
     6781 gctaaagttt cagttaaaga accgatttgg ttgaatttga ttaagattga gtttgcgata
     6841 cctttctcaa taccgttttt caagattttg gtattggtta cgaataagtc atcaccaact
     6901 aattgtactt tgtcgcctaa tactttagtt tggtatgcga aaccttccca gtcagattcg
     6961 tcttgaccat cttcgataga cacgattggg tactctttgc ataagccttc taagtagtga
     7021 gtgaactctt gtgaagtaaa ggttttgcct tcgcctttca tatcgtacac attgcgttct
     7081 ttgtcgtaga attcagatga tgcacagtcc atcgctaaag ttacgtcttt acctaacaca
     7141 tagcctgctt tttctaccgc ttctttaatg cacgctaatg cgtctgcgtt tgaagccaag
     7201 tttggtgcga aaccaccttc gtcacctaca gcagtattta agcctttcgc ttttaatact
     7261 tttgcaagat tgtggaatac ttcagcaccg atacgaagag cttcttttaa tgtagaagca
     7321 cctaccggtt gaatcataaa ttcttgaatg tccacgttgt tgtcagcgtg ttcaccacca
     7381 ttgatgatgt tcatcattgg taatggcatt gagtaaacac ccggtgtgcc gtttaattca
     7441 gcaatgtatg cgtaaagcgg taagcctttt gaagcggctg ctgcttttgc tgttgctaaa
     7501 gaaaccgcta agatagcgtt tgcaccgaat tttgatttgt tttctgtgcc atctaaatcg
     7561 atcataattt ggtcgatttc agcttgtgca gaaccgtctt tgcctactaa tgcgtttgca
     7621 atttcgttat ttacggcaga aaccgctttt aatacacctt tacctaagaa acgacctttg
     7681 tcgccatcac gtaattctaa tgcttcacgt gaaccggtag aagcacctga tggagcggct
     7741 gctaagccta caaaaccacc ttctaagtga acttctgctt ctacagttgg gttaccacga
     7801 gagtcgatga tttcacgacc gattacttta acaattttag ccattgttga tgtcctctaa
     7861 tatacgagtt aatagaaaaa agaataggta tatagtaaag cgattttctg cttttgtctt
     7921 ggaaaaactg attgagtggc agaaaatttg ccactaattt gatctaagac tatattcgcc
     7981 tgagattata gcaacctttg caaaaaacgg caaaaatttg cccgcttgta tgcttatttt
     8041 ttgattaaat gtggggtact gatctttttt gcatagagag aaagaaaaaa atttgggcgg
     8101 aaaaataacg gcgaggctag gaaatacaag gcttcgccgt ttttgtttgg ttggggctat
     8161 gcaaaaaaac aaaatgagca ggattagaaa aaaatgagca gtttttgcga tattttttgc
     8221 ataggtttga tcggttttaa aaccatttta aagcagtttt aaacgagaga atgcccgata
     8281 tgtaccactt gtccgatgat ttggaggttt tgagcttctt cggcggtaat ctgtattggg
     8341 cggtaggact cgttatcgct aattaattca atatagtccc attcttttct aatccgttta
     8401 acccatacgc tttccccatt ctgcacaaga taaatcttat catcaccacg aggctctcgt
     8461 ttgctgaaat ctaccagcat ttggtcaccg tctgcaatgg tagggtgcat tgatgttcca
     8521 tttgcccaaa acacgccgca gttgtgggct tttacgccga ggctttgcag caggctgtcg
     8581 gcgtaaggtt cttgcccgtc tggcttcgtt acgccctcgt taaagctgcc aaagcctgct
     8641 gaaacgttga ttgtgctgaa tccgttaatc attgaaacaa tatcatcagc cattttttct
     8701 agtcgctcaa actctcttgc cacaatactg gtattctctg attgtggttt gctttcctta
     8761 cctgttgcca gccattcaag gctcacattt gacacctctg ctatttttac aagatttgaa
     8821 cgagatggat ctgcctctcc ttttacccac ctagatagtg atgcttgggc tacccccact
     8881 gctcttgcaa actcactgta attgtcctta aagctatttt ttgcaatcca tttcattctt
     8941 tctgagaagc tctcatcgta aatgtttggt ttactcatct tttacgtttc cattaataaa
     9001 gttttactcg taaaacatac tcataaacca ttgattttca agtgatttgt gaataaagca
     9061 aaaatatttt aaatattttt atgttttacg gttgatttat ttaaagtttt acggttaaat
     9121 acacacatca gatagataaa aagaggtgta tcaaatgagt gtattaagcg acgttaaaaa
     9181 aaccgcacag agagactggc atcgagccga tattctggcg gaacttcgta aaaaaggttg
     9241 gtcacttcgc actttggcag atgaaggtaa tgttagctat aacaccctga aatcagtctt
     9301 agacaagcct tatcccaaaa tggaacgtct agtcgcaaat gctataggcg ttgctcctga
     9361 agtaatttgg gcaggacgaa ccgcagaacg tatagaacgt aatcggcgac caaccttaac
     9421 gaataagttc taatcataaa tgatctttaa cgtaaaagat acaaaaagga gcatttatga
     9481 gtgagataag tttaaaaaca cactattcag tagctgaatt attaagtttt aagttatcta
     9541 gtttgccaag tgctcataaa aatgtgcttg ataaagctat aagagaaaac tggcaatctc
     9601 aaaaacgcaa agggcgtggc ggtggtgttg agtatgaatt agcctgcctc cctcaagaaa
     9661 tccaaaccga aatccgctcc cgctttatgt cggcggtggt ggaagccaag ccgaaaaagt
     9721 taccggtagt gcgtgcggag gtggagttag gcaaccttac taccaaacag cgagaaattg
     9781 ctgatgcacg aatggcactg gtggcgtatg tgttggagtt ggaaggctca atgagccgaa
     9841 ttaaagcgat aacctacctt tgcaaccttg ccaaacaagg cgaaatgcca ccgcacttgg
     9901 cggagctggt tgccgtagca aatgctaaaa agacggcaaa acgcacactc tcggtgcgaa
     9961 ccttaaacgg ctgggtggtg gattactgca aggcggagaa cgccgagcaa cggttgaaac
    10021 tgcttgcccc acaggtacgg caggagacca agccagaaga aatttggtgg ctgagtgcct
    10081 ttttggggac gtatcgtcag aaaaacggca tttgcctcac cgaagcctac cgagaatttg
    10141 aggtggaatg ggcgtatcag tatgcagaca acccgctact gttggcacaa tgccccagcc
    10201 taagccaagt acagcgagcg atgaataagt tgccgttgta tgtgaaagag tacggcagac
    10261 gcaccggctc gcattacaag cagttgctta gctatgtgaa gcgggattgg tcggtacttc
    10321 gagcaaatga tgtgtggatt ggtgacggtc actcgctcaa actcaaagtg gcccacccga
    10381 tacacggcaa gccgtttacc cctgagctga caatgattgt tgatggtgca ggcagaaagg
    10441 tggtcggttg gtcgctggca ctcagcgaga atgcttttgc agttgctgat gccctaaggc
    10501 acgccattag cctacacggt gtgccggcaa tctactactc ggataacggt ggcggtgaga
    10561 aaaacaaatt tttggatgca gaggtgacgg ggatgttgcc ccgcctcggt atccgacacg
    10621 aaacagggat tgcaggcaat ccgcaggggc gaggcattat cgaacggtta aataaaacca
    10681 tcggtatgac gattgcccga cagtttgaaa ccggttacgc aagcggtgca gatccggaaa
    10741 cagtgcgtaa aaacctgtat gcggtgaact cgctggcaaa tgccaaaggg gaattaaccc
    10801 cactacaacg taaagcacaa ggcaaattgc caacgtggca gcagttgatt gatgtgatcc
    10861 agtctgtgat tgattggtac aacaacgagc atattcactc ggaaatccgt accacgccgg
    10921 cacgcaaata tcagcagatg ttgcacgcag aagatgtggt gatgttaagc cctgttgagt
    10981 tgcgggatat gagccgaccg gaatttatcc gtaagccgga gcgaggttgg gtaagttgga
    11041 ataacaacca ctattttaac ctgaaattac tggattttga ccgtgaagaa gtggtgatcg
    11101 gggttgatat tcacaatgcc gagagcgtgc aggtgcgtac caaagacggc agatttattt
    11161 gcgaggcaat ttggaacggc aacacccgag aggcattccc ggtggcgatg gtggaacagc
    11221 agcgtaaaga acgccataaa cgccgatcca accttaaaca gcaacagctt gatgagatta
    11281 atgcggaatt aaacccggtt ttaaccattg agcagaaaaa gaggattacg aaaaaaagtt
    11341 agcagtggga ggctaaacga tgaaaaacca agaacttaga gccttaatgg atagcaaagg
    11401 ctatcaacaa aaacaagtgg cacagctttt aggtgtatcc gttgccacag tcagtctgta
    11461 tctcaaaggc gattataacg gcaatgtggc tgaaatggat cgcaaagtag acgagttgat
    11521 tgagcgggat aaggcgaagg tggtggaagc gaaatataac gctgcatttg tgccaacttt
    11581 agcggcacgc agagggatgg aggtaatgca gtttgcccat attgaaggcg agattaatgt
    11641 gatttttggg gcagccggtt taggtaaaac ccaaatgctc aaagaatacg aacgccgaaa
    11701 cagctctgcc acattaattg aggttgatcc gagttgcaca cctaaagtct tgctccgcaa
    11761 gattgccgag gcggtggggg caaatgccag aggggtaaat aacgaactat tagaaagcat
    11821 tgtgaacaag ttaaaaggct ctgaaaggtt gctaatgatt gatgaagctg aattactttc
    11881 gacccgctcg ctagagttta tccgccgaat ccacgattta accggcgtgg gcgtagtgtt
    11941 agccggtatg ccgagattgt tggttaatct taaaggtaaa aataatgagc tggcacagct
    12001 ttatagccga gtaggttttg cttgtgactt aggcaatgcc ttgagcgagg aagatttagg
    12061 gctgttagca gaaagtgcgt taggtacaaa tgaatttaat gccccgctga ttaaagcctg
    12121 caaaggtaac gcacgccgat taagtaagtt aatgcgtggt gtcgtacggt ctagcgagat
    12181 taaccaaacg ccaattagta aagatttggt tgagcaatat agcaagatgt tgattagtta
    12241 gggagcgaat tatgacttgt tttagacact ggacacaaag agtaacagat ggaacagaag
    12301 atttgttttg gttggatgag ttgctagttg gtaaagatga gagagatggt agttttacac
    12361 tttctatctt tgatcctgat atagatgact ttttgttata tgagaaagta aaaacaagaa
    12421 aagattggga aatagcttat cgaaaagcca gagaaattat taatgaacag gacatagatt
    12481 gtagaagctt tagagtttaa ggggaaagta tgcaaaaggt atttagcgaa aaagcaggcg
    12541 aaatgatgaa cccatttaac gcttatatcc acgacagcct tgtgaagtta gaaattgcca
    12601 cgcttgagtg cgaggcgttg gatttggaaa ttgagcgggt ggaatttgag gcggcaagcc
    12661 cacctcgcct tgtgttgcga gataaccgca aaacgcagga ttttgtgaaa aacggcttag
    12721 caagcctatt tggaatgaaa acaaaaggcg gcagacggta tgacagctac caaatgcagg
    12781 tgcggggtgt gaaatgcgtg tgggagtctg aacgtgttac gaaggtgtag aaatgaaaaa
    12841 acggcgaatg atttatgccc tgtatgtcgg cgaagagaat gtggctgacg gcacggcgga
    12901 agaattagca aaacggttgg gagtggaagc aaagacgatc cgatttatgt cgtcccctgc
    12961 tcataacaaa cgagtgaagt ataacggtaa agcagtccgc accgtgaaag tcgggttgga
    13021 atagagagga agtattatga gtaaagtaac aatcggtaat gaaatttact ggaaagatgc
    13081 tgatggcaat ttaaagccgg aggcattagt aaaagaaatc gacaaagaac gtgatgaatt
    13141 agttcgccaa tttgtaagta aagcacaagc gttaagcaaa gcgttaggcg attttaaaca
    13201 atccgtattt gatgacgtag gggcttttgt cagcctatcg gctgaaaaat atggagtaaa
    13261 aattggcggt gcaaaaggca atatcacact atttacttat gacggtgaat ataagttgca
    13321 gttagcagtg caagagaata ttcgctttga tgagcgtatt cacgcagcaa aagccttgat
    13381 tgatgaatgc ttgcacgatt ggtcggaagg ggcaaaaccg gagcttaaag ccttaattga
    13441 taatgcgttt gaggtggata aggaaggcaa tttatctacg gcgaaaatcc tatccctacg
    13501 ccgtgttgag attgatgatg cacgctggaa tcaagcaatg acggcaattt cagacagcgt
    13561 gcaggtaatt ggtagtaaag gttatatccg tttttataaa cgtgatgaaa atggcaaata
    13621 tcagccgatt agtttagata tggcgggggt ttagaatgtt tattactttt aatgttaatt
    13681 atacggataa acctgttgtg gttaatacag acaaggtttg ttcaatagaa aata
//
LOCUS       DANLUT010000052        13689 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLUT010000052 DANLUT010000000
VERSION     DANLUT010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13689
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            29..502
                     /gene="nrdG"
                     /locus_tag="PXB38_001206"
     CDS             29..502
                     /gene="nrdG"
                     /locus_tag="PXB38_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL5353534.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            499..2280
                     /gene="nrdD"
                     /locus_tag="PXB38_001207"
     CDS             499..2280
                     /gene="nrdD"
                     /locus_tag="PXB38_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL5353535.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2337..2433
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2490..3308
                     /gene="thiM"
                     /locus_tag="PXB38_001208"
     CDS             2490..3308
                     /gene="thiM"
                     /locus_tag="PXB38_001208"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL5353536.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3301..4614
                     /locus_tag="PXB38_001209"
     CDS             3301..4614
                     /locus_tag="PXB38_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353537.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4750..4846
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4914..6443
                     /gene="thiE"
                     /locus_tag="PXB38_001210"
     CDS             4914..6443
                     /gene="thiE"
                     /locus_tag="PXB38_001210"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL5353538.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLPIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6436..7608
                     /gene="cytX"
                     /locus_tag="PXB38_001211"
     CDS             6436..7608
                     /gene="cytX"
                     /locus_tag="PXB38_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL5353539.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7647..7856
                     /locus_tag="PXB38_001212"
     CDS             7647..7856
                     /locus_tag="PXB38_001212"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5353540.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7864..8040
                     /locus_tag="PXB38_001213"
     CDS             7864..8040
                     /locus_tag="PXB38_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5353541.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8081..9937)
                     /gene="sppA"
                     /locus_tag="PXB38_001214"
     CDS             complement(8081..9937)
                     /gene="sppA"
                     /locus_tag="PXB38_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL5353542.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10045..10608
                     /locus_tag="PXB38_001215"
     CDS             10045..10608
                     /locus_tag="PXB38_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5353543.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10679..13003)
                     /locus_tag="PXB38_001216"
     CDS             complement(10679..13003)
                     /locus_tag="PXB38_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL5353544.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLREKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDINQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EIRKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(13003..13557)
                     /gene="pilW"
                     /locus_tag="PXB38_001217"
     CDS             complement(13003..13557)
                     /gene="pilW"
                     /locus_tag="PXB38_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL5353545.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
BASE COUNT         3682 a         3124 c         2976 g         3907 t
ORIGIN      
        1 cacaatatat tgtgttaatg aattagtaat ggaaaatctc agattcagct cggaacaaat
       61 tgtttggcaa gaagtgccga atgagacctc acttgctttt ctgattacag gctgcccgct
      121 tggctgtaaa ggttgccata gtgcggatag ctggaaagcc tgtcttggga aagagcttag
      181 cagtgaatat ctctctgaac gcctaaaacg ctaccaaggc ttaattagct gcgtattgtt
      241 tatgggcgga gaatgggaag cagaaaaatt actgccgctg ttgcaactgg caaaaaaaca
      301 ggggctaaac acctgtcttt atagtggttt ggagcagcac gaaatcgccg agactttatt
      361 acacgagcta acctacttaa aaaccgggcg ttggattgcc gaacgaggag gattggaaag
      421 tttaaccacc aaccaacgct ttactgattt acgcaataac caaaatctta accatctttt
      481 tattcgagga gcttcaatat gattcgctta caaccgacac aattagacgg aaaactacat
      541 ttcattaacc aatatattca agccaaaaat gccgcagacg gttcaaaaat ggacgccaac
      601 gctaacgtca cgcaaaaaaa catagcgaca atggaacagg agctaatgaa agattttttt
      661 gtgcaaatca accgagcaaa agtgagtgaa aaaattgcaa aaatttttgg aaaagaaacc
      721 gcttgtgaat atttacgtca aatcgaagca cacgaaattt acgtacacga tgaaaccagc
      781 ctaaaaccct actgcgtttc agtcactatg taccctttct tgcgtgatgg tttgactaaa
      841 ctcggcggcg aatccaaagc cccgaaacat ttagcctcat tctgcggttc ttttatcaat
      901 tttgtctttg cagtcagttc tcagtttgcc ggtgcagtcg ccacggttga atttctgacc
      961 tattttgact attttgcccg caaagattac ggcgataatt acttacagac tcatcgttca
     1021 gatattgaaa accacctgca gcaggttgtg tatagcatca accaaccggc agccgctcgt
     1081 ggttatcaaa gcgtcttttg gaatatttca gtgtatgaca aattctattt tgaagcgatg
     1141 tttagccgtt ttgtttttcc tgattttgag aaaccaaatt gggaaaccac ttcaaaatta
     1201 caacttttct ttatgcaatg gttcaataaa gagcgaagca aagcgattct cactttccct
     1261 gttgtgaccg cagcaatgct taccgaaaag ggcaaatgta aagatgacga gtttgccaat
     1321 caaatggcaa aagagctatc tcaaggcaat tcattcttta tttatcaatc agataatccg
     1381 gattcccttg cttcttgctg ccgcttgaga aatgaaatca gcgatcatag cttctcctat
     1441 tcattagggg ctggaggtgt tgcgacaggt tcaatcaatg taattactat taatatgaac
     1501 cgtttggtgc aagataaccg tgatttaagc gaagaagtca gcaagatcca taaatatcaa
     1561 tacgcttacc gcaaactgat ggaagagtat ttagctgccg gtatgttgcc ggtttacgat
     1621 gccggtttta tttcactgca taaacaattc ctaactattg gcattaacgg aatggcagaa
     1681 gctgctgaat cacaaggttt aaccgtaggt tacaatccag actatattga ttttgtgcaa
     1741 tctcggttaa aaattatttt ccaagctaac caagcagccg gtgaaaagta tggggtaaaa
     1801 tttaataccg aatttgtgcc tgctgaaaat ttaggggtca aaaacgccaa atgggacaaa
     1861 gaggacggct atttcgtacc acgagattgc tacaattcct atttctatgt ggtagaagat
     1921 gaagaaatta atgctttgga taaattctta ctgcacggca gagagctgat tgaatggctg
     1981 gacggaggct ccgctctaca cttgaattta gacgaagcct taacccaaac cggatatcgc
     2041 tccttgctgg ataccgccgc taaaaccggc tgcaattatt tttgtattaa cgttaaaatc
     2101 acgatttgca acgaatgtag ccacatcgac aaacgcacgt tgcacagttg tagcaaatgt
     2161 ggctccgata atattgatta cggcactcgg gtaatcggct atttaaaacg agtctccgcc
     2221 tttagttccg cccgccaaaa agagcacagc ttgcgtttct atcaccgaga agcagcttaa
     2281 ttgaaaactg cagttgtagc cctttacaac cgctttttta gtgattatat taaagcctca
     2341 tttagtcggg gtgcttgcct aagggcaagc tgagaaatac ccgttgaacc tgatgcagtt
     2401 agcactgacg taggaaacta aaggcgtaaa cccatctatt ccccgttggt gttggtgcgt
     2461 tgtttttcaa tcatattaag gaataaacga tgaccacatc actcccctat cactcgcatt
     2521 atttgcaaaa aattcgacaa aatcgaccgc ttgttcacaa cattaccaac attgttgccg
     2581 ctaatttttc tgccaacggc ttattggctc ttggtgcttc tcccattatg gcagctgcta
     2641 ttgaggagat ggaatccgtg ccggcactca gtaacgccgt ggtgattaat atcggcacgc
     2701 ttatcggcaa agaagtagaa gcaatggagc ttgctggcaa aaccgccaac cgtttaggta
     2761 ttccgctcat tcttgaccct gtcggcgttg gagcaacacc tttccgccgt caaacagttg
     2821 aaaccttagt cgaccaaatt cacttcaccg ccattcgtgg aaatgcgggg gaactagcta
     2881 ccctcgccgg tgtagaatgg caagccaaag gcgttgatgc cggcgaaggc tcgcataatg
     2941 tggttgaaat cgcccaacag attgccaaac gttaccaaac cttagtcgca atcagtggtg
     3001 aaaccgatgt ggtaagctct ggctcacaca cagctttatt gcacaacggc agcccgatgt
     3061 tccccaaaat taccgcttca ggctgtttat taagtgcggt atgcggggca ttcttagccg
     3121 ttgccgacaa agagcactat ttcaacgcac ttattgaggc ttgcgccgct tatgccgttg
     3181 caggcgaagt ggctgctcaa gcactcaaac caactcaata cgggcaattt gccgtcaatc
     3241 tgctggatac ccttggggca ttaacgcctg aaaccgttga gcaatatgtg agggttgaat
     3301 atgtctaaaa ctcactcaaa cccaactaaa gtggcggttg cctcaatggt cggcacggcg
     3361 attgaatatt ttgataacta catctacacg atggcagcag tgctggtgtt taatgtgcag
     3421 ttttttaata gcgatgatcc ggtttccaac caattaatgt cgctttccgt actagctctt
     3481 gcctttttca cccgcccgat ggggtcgatt ttattcgggc atttcggcga taaatacgga
     3541 cgcaaacaaa ctctgattgc ctcgctctta ttaatgggct tatctaccgt agcaatcggg
     3601 cttttgccta attatgccgc cattggcatt tgggcaaccg tgttactctg cctctgtaga
     3661 atcggacaag gtttaggctt aggcggcgaa tggggcggag ctgctctcgt tgccactgaa
     3721 cacgccccga aacacaagcg ggcatttttt ggtatttttc cgcaaatggg cgccccaatc
     3781 ggcttgctgt tggcaaacgg agcgttctac ttggtgaatt taatttacgg tgaacaaacc
     3841 ttcttggatt gggcgtggcg aattccgttt gtcgcttcta ttgtgatgat cgccattggg
     3901 ctttatatcc gaattaagat cagcgaaagc ccgattttcc ttaaagcgga acaacaaggt
     3961 aaaaaccgcc ataccccgct taaaactttg tttagccaac acctcaagcc ttttatgatc
     4021 ggcgtgctga ttgccaccgc cggctatgtg ttgttctaca ttttagttgc tttcaccccg
     4081 attttcgtca aaagcccggt ggcagtttct caagcaggac acgctacagg cttaggttta
     4141 ccggtaaatc tctacaccca atatttgctg attacctccg tgattttcgg cattgcgatt
     4201 ttcttctccg gcatttattc agacaaaatc ggacgccgtt tactgctgtt acttgccaca
     4261 ggagcaaccg tagtttacgg cttaacaatg ccgtttttcc tcgaaaacgg cacaccgact
     4321 tcgatcttta ttttcctcac cattggaatg atcttaatcg gcttaagctt cggcccgatg
     4381 gcagtaattc tacccgaact cttcccaaca gaagtacgtt acacaggggc ttcgcttgcc
     4441 tacaccgctg ccggtatttt aggagctagc gtgttcacta ttattgcggt caaaatcaat
     4501 gaaaatttcg gcttattcgg tgtaggcggc tatttatcgg ttgcctcatt actgagcttc
     4561 tgggcattgt ggcaagtcca cgaaaccaaa gatttggaat tagaggagat ataaaaaacc
     4621 actcacttaa cgacggggca agttaccacc ttgccccaag atgagggaat gcaaatttcc
     4681 ctctaataga cttcacaacg gatattttgc atttttttat aaaaaataac cgcttgtaag
     4741 ctatactaaa aacgcttgtc ggagtgccgt aaggctgaga tcgcaacagc gagatccgtg
     4801 gaacctgtag gttagtacct gcgtagggaa caagttttac ccaaattcag attttgggat
     4861 cattaccaca tctctggcaa gcaaaaccct aagcatatta tgaggatttt gcgatgtcta
     4921 attattcaaa ctctccatac caacctaacg tcatttggac ggttgccggc tcagattcct
     4981 gtgccggtgc cggtctgcaa accgatttac atacctttca cgattttaac ctagtgggtt
     5041 gttcagtagt tacttctgta acggctcaac atccgcacgg tgtgctgtgt gtaacgcctg
     5101 ttgatgatca caccttccgc caacagtttg aagccttgct ggttcaaggc tacccgaacg
     5161 caatcaaaat cggcttactc tgctcgcaag cacaagtaga gatcttgtgt gaatatatcc
     5221 aaaaaatccg tgcagaaagc tcgcattatt gttatgtggt ttacgaccct gtggcagtgg
     5281 caagcagtgg gcaggcgtta tccgacagta ttttattgcc gatagtgcaa caaaaattgt
     5341 atccgctggt ggatttaatc actccaaacg gcactgaact cgctttatta agcgacacag
     5401 aaatccagac ctttggtgat gtgaaaaccg ctagccacaa actgtttgca cagggaatca
     5461 aagccgtgtt agccaaaggt ggacattttg aatggctggg ggaaacggta agagattatc
     5521 tgctgactgc aaatgaaatt tatgccttta gtcacgcccg acagcaaagt gtgaataccc
     5581 atggcacagg ttgcacctat gcttcagcgg ttggagcgat gttggcaacc ggctttgatt
     5641 tagctgatgc cgtcactgtt gccaccgctt atttgcaaaa aggcttatcg gaaaaacaag
     5701 gcagagggca aactgcttta agttcacttt gccacaccgg ctaccctgat gatatcgctt
     5761 tcttcccaca aaccgagctg atttctgccc ctcttaaatt gccgaaagag ccttttgctc
     5821 caacggaata tcaacttggg ctttaccctg ttgtagatag cgttaaatgg cttgaacgct
     5881 taattcttgt aggggtaaaa accttgcaaa ttagaatcaa aaatcgaccg cttgcagaga
     5941 ttgagcaaga aattgcccat tcggtcgcac tggcgaaaca gcacaatgtg cgtttgtttg
     6001 taaatgatta ctggcagtta gccatgaagt atcaggctta cggcgtgcat ttagggcagg
     6061 aggatttagc caccgccgat ttaaatgcaa ttcagcaatc tgggttacgg cttggtgttt
     6121 caacccactg ctactttgaa ataatgcggg cattggcggt gaaaccgtct tatatcgctt
     6181 ttggccacgt tttccctact caaaccaaag taatgccgtc tcaaccacaa ggcttaacaa
     6241 atttagccaa atatgttgct ctcgttgcac cgcttaacat tccaactgtg gcgattggtg
     6301 gaattaatga gcaaagcatt gaaaatgtaa tgcataccgg tgtcggcagt gccgcggtgg
     6361 taagtgccgt tacccaagca aaagattggc aacaagcggt caaaaactta gcaaaatttg
     6421 caaatggagg ccgtaatgaa tagaactctt agtacgctaa acagtggttt gatttgggcg
     6481 ggagcgggca ttagtgccag tgcaatcgtg gttggcactt ggattgcccc acttggctgg
     6541 caacaaggct tgctggcgat agtgctaggg catttattag gcggcatttt gttttttgct
     6601 gccggcttaa ttggggcgaa aaccggcaaa aatgcgatgc aaacggtgca aatttccttt
     6661 ggcagaggct cggtgttttt ctcccttgcc aatgtgctac agcttgttgg ttggacagcc
     6721 attatgatct atacaggggc agagatcagt aatgccctta gccttgcctt atgggaatat
     6781 tcggctttct cgctttgggc aatcgtgctt gggttgctga ttgtgctatg gttatttacc
     6841 ggctctaatc aggtcggaaa attcaagtta gtgacattga tagcgatgtt tttgctcacc
     6901 ttatggctaa gcattaaggt attgaatggg caggaaaatt ttcctgtttc gggtgaaatg
     6961 ccgtttagca ccgcagtgga attagcaact attatgcctc tttcgtggct acctttggta
     7021 tcagactata ccgctaaagc gaaaaagcct tttgccgcga ccctttcggc gaccataggc
     7081 tatttgatca ccagtgcgtg gatgtatgcg ttaggtctgg gtatggtgct atttaccggg
     7141 caaaccgaaa ttgcccctat gttactaatg acaggaatga gccttatcgg cattatggtg
     7201 atgattcttt cgactgtgac taccacgttt cttgatgcct attccgccgg tgtaagtgcc
     7261 ggcaatatca cggcaaaatt caaagaaacc ccaaccgcca ttctagtcac aatcatcggc
     7321 acgctactgg caatcagttt accggttacc caatatgaaa atttcctgct gctgataggc
     7381 tcggtattcg ccccgatgat tgccgtgcaa attgcggatt tctttgtgtt aaaacgccac
     7441 caagcacagc ctaatgttga ttgggttgct gccggattat ggcttgtcgg cttcgtgcta
     7501 taccaccttc tctcttacca ccaagtgcat ttactactcg gcttaaccat tccagtgatg
     7561 ttagtgattt ttctcagcac catttttgtg aggaggttca caaaatagaa agataagcgg
     7621 ttcaattgga gtgaaaattt gctaaaattg agtcgcttgt tttaaacaat gactgggtag
     7681 taacaccaca agctcaactt gcctaccaca ccattaacgg taaagccgat gaggaacggt
     7741 taaatctttt agttgcccgt gccggcgtaa gagtagcaaa aggctttgcc ttgaataatg
     7801 gttggaatct gcaaccttat gcggaagtaa acggcattgc tgaaaaaggc caatagtacg
     7861 aaagtgcaag taaaccaata tcagtttgga gttgccgaaa acaagggcag agtgcaaggt
     7921 tcacttggct tgagtgcagg aaacggtaat caccgtttag gtttagaggc atcagttgct
     7981 tcaggtaaga aactgaaaca accatttaat gtattagtaa attatcgtta tcaatggtaa
     8041 tttaagaggg caggtgaaaa cctgccctta aattcaataa ttaatctatc ttcccacaat
     8101 ttaaacagta aagatacatc tgtttcggat cgttaaaacg tgaaagagtc tctagctgtt
     8161 gttgcggttg cttcaacagc ggtaaatcaa gccaatttgc cacgctaaat tgtaattgag
     8221 ctttgaaatc acgggcaagc gtgccaaata agctgtcatc ttgctccgca aaccattgta
     8281 agccgaactg ttcgacttta ggttggtttt ccgcttcacg tttttggttg atcaattcag
     8341 ataacgcatt atatgccaca ttaaaattgc ccaactcatc aaccaatccg tgttttaacg
     8401 catcagttcc cagccacact tgcccttgag ccactttatc taccacctct tttggcattt
     8461 tcctgccacg agaaaccagc tctaaaaaac ggtcgtagcc gttttcaatc ccaatttgca
     8521 gcacttctgc ctgctcttgc ggtaggcttt ttaaaccggc ttgttgtgct agggcagaag
     8581 tcgctatgcc gtcttcgctc acaccgagat ttttagcggt tttttcaaaa gttactgcta
     8641 aaccgaaaat accgatagag ccggtaagcg tattcgggct agcaataatt ttatcgctgg
     8701 tagccgcaat ccaataaccg cccgatgctg ccattccgcc cattgaagca accaccggtt
     8761 tgccggcttg ttgaaaggct tccacttctt ggcgaatcag ttcagacgcc acagcactgc
     8821 cgccggggct gttaatgcgt agaattaagc cttccacatt tttgtcatct cgagcttgtt
     8881 gcagtaattt taccagcgtc tcgctgccca cattcatttc gtcactttca ccgccagcaa
     8941 tcgccccttc cacattcact accgcaattt tcggagcatt cacttctgca aagcggtcgt
     9001 ttagttcagt catataatct aaaaactcaa tctggttata actgccttcg ctgtttttgc
     9061 caaactgtgc aatcagttta tcccgacttt cttggctgga cactaactga ctaacccatt
     9121 tttgatttaa tgccagttga gcatcatctc ctttagcttg tttatatttt tcaatgtaat
     9181 tggcaggcga taaatccagt gcttgcggtt caatgttgcg gttttgagct agtgttgcca
     9241 cagtttgttg ccaagtgccg tttaaccagc ctcgggcatt ttgtttcgcc tcctcagaca
     9301 tatcatcacg cataaacggc tcaaccgccg atttataagt accgacacgg aaaatatgcg
     9361 gttcagcctc aattttatcg agcaaggttt tgaaataagt gttggaataa tttaagcctt
     9421 ttaaatccac cgcaccgact ttattgagat aaatttcatc agcaaaggaa gcaagataat
     9481 attgtttttg cgagtagtct tcgcctactg caatcaccgg cttgcccgat tgtttgaagt
     9541 tgttgatttc attgccgata aaatccaatg agctgaaatc agcactttgt agcttttgca
     9601 gatctaacac caagccggta attttcgggt catttttagc gtggctaatc gcttgcacca
     9661 catcaaaagt cgagatttta aacggctcgg aactacctaa ttccgattgc accaagcggt
     9721 agaaatcagt gaattcttcc cgattatctg ctaaataacc atctaaattt aaacgtaacg
     9781 ccccttgatt gaacaccggc ttttgcgtgc tgccagaaga gctgataaat gcgaccaccg
     9841 gcactaatag caaaataaac agaataaaaa agagattaat gacacactct ctaatacaac
     9901 ggaagattcg gtaaaatgct tttaaaatcg ttaacatcgg aaattcctaa aaataaactc
     9961 agtcggcaca gtataaagca atcgctaaat gaagaaaata tgctattctt gacttgaacg
    10021 caaaaaatta acaaaggaac gcttatgcaa atcttggatt tattacacca tcgccgttca
    10081 aataaaaaat ttggcgataa agccccgaat gcagaacaac tggaacaaat tctaaaagcc
    10141 ggcttgcgag tgccggatca cgggcggtta aagccttatc gctttgtggt gattgaaaaa
    10201 agcggtatgc cacagtttgg tgaatgctta aagtctgcgg tagcagaatt tgatatgggc
    10261 gaggaacgct taaaaaaagc ggaaaaatta gctaatcaag ctccaatgat tatcggcgtg
    10321 gtagcaacat tagacgacag catcgccaaa gtgccaagtt gggaacaaat gattaccgca
    10381 ggctgtgcaa cttatgcgat tcagttagcg gcaaatgcac agggctttga tacggtttgg
    10441 atcaccaata aatggattaa cggctctgct cttcgctccg cttttggttg ccaagaatct
    10501 gataaaatca ttgccttaat tatgcttggc tcaccggcag agggcgagca aattgcatta
    10561 gcccctgaaa gtgaaagttt agaggggttt gtacgttatc ttaagtaagc aggttaacag
    10621 ataaaagtta gtaataaggg cgaaaaacat ttcgcccttg cttttatctg ttttcgcctt
    10681 acttcttcca gccttttaac gcatcggcaa aggcattgtt accaaaagcg ttgcgattgt
    10741 tgctttgcaa gcggtcattt ttctgcgtat ttttgcgaat ttctgctgaa tttcgaccgc
    10801 ttgttggctc ttttttatcg gttggtttgt cgtctaaacg catcgtaagg gcaatacgtt
    10861 tgcgggcagc gtccacctca agcactttga ctttcaccac atcaccggct ttcactaccg
    10921 tgtgcggatc ttcaacaaaa gagtttgaga gcattgaaat atgcaccaag ccatcttggt
    10981 gtacgccaat atcgacaaaa gccccaaagt ttgccacatt ggtcactgtg ccctccaaaa
    11041 tcataccggc tttgaggtcg gtaatttctt ccacgccgtc cataaacacg gcggttttaa
    11101 actctccacg agggtcacgc cccggttttt ctaactcttt gaaaatatcg ttcaccgttg
    11161 gtaaaccaaa ctgctcatcc acaaaatctt tggcgttgag cgagtgaatt ttgctgttgt
    11221 tacccattaa ttctgcaagt gttgaggtag ttgcctgtaa gattttttct accaccgggt
    11281 aagcttccgg gtgaacgctt gaggcatcaa gggcattttt cccgccgata attcgcataa
    11341 aaccggcaca ctgttcaaag gctttcggcc ctaaacgagg cacttttttc agctctgagc
    11401 ggctggtaaa acggccgttt tcgtcacgga atgccacgat attttgtgcc aatgttttgg
    11461 tcattcccgc cacccgagcc agcaacggag cggaggctgt attcagatcc acgcccactg
    11521 cgtttacaca atcttctact accgcatcga gtttacgggc aagttgggat tggtttatat
    11581 cgtgttgata ctgcccaaca ccaatcgctt ttggttcgat tttcaccaac tcggcaagtg
    11641 gatcttgcaa acggcgggca atcgaaaccg ctccccgtaa tgaaacgtct aaatttggaa
    11701 actcgttagc cgcaaattca gaggcagaat agaccgatgc cccagcctca ctcaccacca
    11761 ccgtttgcgg tttattctct ttgatttctt taatcaccgc tttggcaaaa cgttcggttt
    11821 cacgagaggc cgtaccgtta ccaatcgcaa tcagttccac attgtgttgt ttgattaagc
    11881 tgaaaatcgc aagctgtgcc tccgcctctc gcccagtgtg agggtaaatt gtggcggtat
    11941 ccagcaattt accggtgtta tccaccaccg ccactttcac gccggtacgc aagcccgggt
    12001 ctagccccat tgtatttctc gcaccggcag gggctgccat taataatgcc gagagattgc
    12061 gggcaaacac atcaatcgcc tcttcttcag ctttttcacg cagggttgcc attaattcgg
    12121 tttctaaatg cagagctgct ttgattttcc acgtccaagc aatcacttgc tcacgccatt
    12181 tatctgctgg ttgattatta aaaatcacgc ccaaatgctc acgaataatt tcttcacaat
    12241 ggctggattt tgtgccttct tctgcagtcg gatcggcatt taatgaaagt gataacaccc
    12301 cttcatttcg cccacggaac atcgccaaag cacggtggga aggcacgctg ttaaacggct
    12361 cgctatgagc aaaataatca cggaatttct cgccctcttc ctctttgccg tcaatcactt
    12421 tcgattccaa cgtggcgtaa gcggtcaaat attggcgaag ttttgcaagt agctcagcat
    12481 cttcgctaaa acgctccatt aaaatatatc ttgccccgtc taatgcggcc ttggtatccg
    12541 caacgccttt ttccgcatca acaaagtttg ccgctaaggt ttcaggatct tgtttcggat
    12601 cattccataa actgtccgcc aatggctcta accctgcttc aatcgcaatt tgccctctgg
    12661 tgcgacgttt tggtttatac ggcaaataga gatcttccag ctcggtcttg ctttcactgc
    12721 ttagaatttt ggcttttaat tcatcggtta atttgccttg ttcttcaatc gacttcaaaa
    12781 tggtttggcg acgttcgtcc atttcacgca aataaattaa gcgggtttca aaatggcgaa
    12841 gttgggtgtc gtctagcccg ccggtcactt ctttacggta acgagcaata aatggaatgg
    12901 tattgccctc acctaatagc gtgatggctg caagaatttg gtgtgagcca acgttgagtt
    12961 cgccggcaat aatttggctg atttttagat ttaagtcagt cattagtttt ccttcaataa
    13021 atttgctcga ggtttatcca atttctcaag ctcggtcaat gtttcggcaa ttttttgcag
    13081 attcggctct tttttcgcac ataacaccat attttctaag ctatccgctt ggtgatagta
    13141 gggtgctttg cttttgacag cctgctcaaa ttgctgataa gcctgttgaa attgaccctg
    13201 tttacataaa aaagtgccgt aattattcag cacatcaggg cggttttgac tcaatttcag
    13261 tgccgtttgg taagcttttt cggcattttc agcatcacct gtttgttggt aataataggc
    13321 aagcaccgaa taagggaggt aatctttttc atcgtgagcc aaggctttat caatattctg
    13381 cttagctttt gggaaatcat tttgctccag ataagctaaa gccaaattaa tacgggcttt
    13441 taccgcttcc gagcggttaa attcgacttc agaggaagaa gggggaagag aagaacaagc
    13501 cgctaataaa aaaatcagaa tacaagcggt catttttgga aaaaattttg caaacataac
    13561 gttctcctac aacaaagggc ttaattttac tgttccatcc tcgctaagac tagcgatttt
    13621 ttgcgaagaa gaaaaatttt tcgttttcat ttttcgacgc agatcgcaaa aataataatg
    13681 gggtgttgt
//
LOCUS       DANLUT010000053        13617 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLUT010000053 DANLUT010000000
VERSION     DANLUT010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13617
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            57..1010
                     /locus_tag="PXB38_001218"
     CDS             57..1010
                     /locus_tag="PXB38_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353546.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            1012..2982
                     /locus_tag="PXB38_001219"
     CDS             1012..2982
                     /locus_tag="PXB38_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL5353547.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEEPQSKEA"
     gene            2997..3803
                     /locus_tag="PXB38_001220"
     CDS             2997..3803
                     /locus_tag="PXB38_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5353548.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            3867..5453
                     /locus_tag="PXB38_001221"
     CDS             3867..5453
                     /locus_tag="PXB38_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL5353549.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIDFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            5499..6881
                     /gene="nhaC"
                     /locus_tag="PXB38_001222"
     CDS             5499..6881
                     /gene="nhaC"
                     /locus_tag="PXB38_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5353550.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSGIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(6924..8114)
                     /gene="ispC"
                     /locus_tag="PXB38_001223"
     CDS             complement(6924..8114)
                     /gene="ispC"
                     /locus_tag="PXB38_001223"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL5353551.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNQYEVFALVGGKNVELMLE
                     QCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAAIV
                     GAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQSL
                     PPEAQQKVGFCPLAELGVSKIILTGSGGPFCTKPLNEFDAITPAQAVAHPNWSMGKKI
                     SVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNPDM
                     CTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYATTA
                     MNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAKQA
                     VLQL"
     gene            complement(8233..10431)
                     /gene="relA"
                     /locus_tag="PXB38_001224"
     CDS             complement(8233..10431)
                     /gene="relA"
                     /locus_tag="PXB38_001224"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL5353552.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSLHTVVLGEGDKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            10685..11992
                     /locus_tag="PXB38_001225"
     CDS             10685..11992
                     /locus_tag="PXB38_001225"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL5353553.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMFTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLAHQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            12177..>13617
                     /gene="der"
                     /locus_tag="PXB38_001226"
     CDS             12177..>13617
                     /gene="der"
                     /locus_tag="PXB38_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL5353554.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIDAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEYQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEG"
BASE COUNT         3874 a         2941 c         2810 g         3992 t
ORIGIN      
        1 cttgtaggta aacttagatt taattttgga gtgtaactac actcaaggag aagaaaatgg
       61 aaattatact ccgattatta tggcgtcgcc taatggctct gccggtaatg atcttaggcg
      121 taactgcctt ggtatttatt gttttacaat tcacccccgg agatccggca accgttgctc
      181 tcggtgaaag cgccagcgaa gccgctaaag aaatctatcg tgaacaacat gggttaaatg
      241 atccattgct tgtacaatat tttcgctttt tagggaattt attcgtatta gatttcggta
      301 tgacaacccc tccagaacag cctattgttg atatgattgc taaagcattc cctttaacat
      361 tacagcttac ctttattggg gtcttcttag ctgctatcgt ctctttcaca ttaggtgtaa
      421 cggcagcact ttaccgtgat acttggattg atcaattaat ccgtttaatc tcggttgccg
      481 ctgttgccac accttctttc tggttgggta ttttattgat tcaatacttc tccttaaaat
      541 tagattggtt gccttcaggc ggttttattc catttagcga agatccaaaa ggctatgtaa
      601 actcaatggt tctcccttca ctcgctttag ctgttcctgt atgtgcctca ttgatccgtg
      661 tcgtgcgtac aacaatggta gaagaaatgg ataaagatta tgttcgaaca gccatcggta
      721 atggtgtacc ttactcaacg gtgattcgcc acaacgtgct tcgtaatgcc ttaattactc
      781 cggtaacagt attaggttta cgggttggtt atttattagg tggtgcagtt gtgattgaac
      841 agatcttcga cttaccggga atgggtaaat taattttcaa cggtatcgtc aatcacgact
      901 tgaacttagt gcaaggtgta gtattaacta tcgcatttac tttcgtgttg gtgaatatca
      961 ttgttgatat tctttacttg ctcattaatc caaaaattcg gagtttataa tatgtttcgc
     1021 caaggattag ctgctcgact tgcttcaggc ggtgcaagat ttagagcatt atcaaccagc
     1081 tcaaaaatcg ccttactctt tattgtattt atcgcattag tcgctatttt tgcaccatta
     1141 gtagcgcctt atgacccact acaaacgcta cgtccagtgc aagctccaag cggtgattat
     1201 ttattcggta cagaccgttt aggacgtgat attttctcgc gtatggtatg gggagcaaga
     1261 acatctctct ttatcggttt aggtgcggta ggcgttgcga ttctattcgg tagtatttta
     1321 ggggcaaccg cggcaaccgc cgataaattc ggtaacgaag tgattatgcg ttttatggat
     1381 atcttaatgg cattcccggg tatcgcatta gctgctgtat tacttgccac tttcggtaac
     1441 tctgtacctg tgattatcgt gactattgcg gttgtttaca ctccccaact tgcccgagtg
     1501 gtgcgtgcta acgtagtatc tcaatgggaa gaagattatg tgcgtgccga gcgtgtaatt
     1561 ggtggtagcc gtacttatat tctattaaaa cacgttgtgc gtaatactgc tgcaccggtt
     1621 ttagtattcg caacagtgat ggttgctgat gccatcgtat ttgaagcatc actttcattc
     1681 ttaggtgcag gtgtccagcc tccattccca tcttggggaa atatcttatc tgaaggtcgt
     1741 aaccttgtat taagtggctt ctggtgggct acaactttcg cagggattat gattttatta
     1801 accgtacttg cgttaaatat ccttgctgaa ggcttaaccg atgcgttagt aaatccaaaa
     1861 ctaaaacgtt caactcaaag taaagaagat gtcgcaaaac cattggcaac agacgttcaa
     1921 gaagcaatgt ctgaaactct tgcgttaaaa cgttacttac tcaaattaca cgagaaagaa
     1981 acgacccgta ctgaccgtat gcaattaaac tcaacggcca aaccgatttt acaagtgaaa
     2041 aacttatcaa tccgtttccc aaatcgttat ggtgaaactc cgcttgttga taatatcagc
     2101 tttactgttc acgaaggcga aaccatgggc ttagtgggtg aatctggttg tggtaaatca
     2161 atcaccgcat tctcaattat gggtttatta ccaaaaactg caaaaatcac tggtgaaatc
     2221 ctctttaccg accgttcagg taaacaacac aatcttttag aatcagccga tttaaatgcc
     2281 cttcgtggtc acgaaatctc gatgatttac caagatgcat taagtgcgtt aaacccatca
     2341 atgcgtatta aagaccaaat ggcacaatta atcagccgtg gtggtaaaca atcagcagaa
     2401 acattattgc aatgggtaaa acttgacccg gaaaaaacgc tcaaccgtta tcctcacgag
     2461 ttatctggag gacaacgtca gcgtgtatta attgcaatgg cacttgctcg tgaaccgaaa
     2521 ctattgattg ctgatgaacc aacaacagca ttagacgtaa ccgttcaagc tgaagtgatc
     2581 aaattattaa acgaattacg tgagaaactt ggatttgcaa tggtattcgt gagccacgac
     2641 ttagctttag tggcacaaat cgctcaccac atcacggtaa tgtatgctgg tcaagtggtt
     2701 gaaactgcac caactacgcc attattggca aacccaacac acgaatacac acgtggatta
     2761 ttaggctcgg tactttctac cgaattgcgt gcagaacgcc tataccaaat tccaggcagt
     2821 gtgccttcac catttgattt tgcgaaaggt gaccgttttg cgagtcgttc attaagacca
     2881 gatgcaaacc ctgaacagca cttgaaatta gtgccaaccg gtgatcaccc acaacacttc
     2941 tgggcttcac acttagaaga accacaatct aaagaagcat aaaggagagc aatacgatga
     3001 gtatgaaatt tatcaaagaa cagccaatta ttgaactgtc taatattgtt gtgcaatttg
     3061 cttctcgtga cggcacctta tttaacccga aaaaattcac ggcggtaaat gatgtcagcc
     3121 tagcaattca cgccggtgaa acagtcggtc tggttggaca atctggttgt ggcaaatcta
     3181 ctttagccag tgtgatgatc gggcttcaaa aaccaacctc cggcacagta aaatttaacg
     3241 gcttagagat gaaatatggc agtgcggaag ctcgcaaata tttcggtagc caagtgtcag
     3301 taattttcca agacccggca accgccctaa atccgcgtat gcgtgtgttg gatattttaa
     3361 aagatccgat ggatattcat aatatcttac aaccgcaaga acgtgagaag cgggtttatg
     3421 atttgctctc tcgagtcggt ctacctcgtt cagcggcgtt ggtcgagcca acccgattat
     3481 ctggtgggca aaagcaacgt gtagcgattg ctcgtgcatt ggcattaaat ccgaagctga
     3541 ttgtggctga tgaaccaacc tctgcacttg acgtatcggt tcgagctcaa gtactgaacc
     3601 tgctggcaga cttgaaaaaa gaactcaatt tagcgatggt atttatctct cacgacttac
     3661 aaaccgttca ccaagtttca gaccgcattg tggttatgaa cggcggtaaa attgtggaaa
     3721 tgggcgatgc ttcagacgta tttgaacgcc caacgcaaga gtacacccga accttaattg
     3781 aagcagcacc atctttatta taattgtgct ttgtgcctac aagcggtaaa atttttcgca
     3841 aattttaccc gcttgtgttt ttatttatga tccaaattac ccaaaccatt aacattgatt
     3901 tattaattgt cggctctggc atcgctgggc tttctgctgc agttgaggca aaagaaaaag
     3961 gcattaatac cttactgatt agcaaatcta cgattggctc gggagcgagc tactttccgc
     4021 ttaaggcaac acttggcatt caagtaaccg gcgatgaagc cgataaaatt cactttaaag
     4081 aagatattga aaacatcggc aaaggcaaaa tcaaccctaa tgtggtacaa gcctatatcg
     4141 aagattcacc acaagcgatt gaactactcc accgtatcgg ctttcagcct tggaagcgta
     4201 acgacaaccg tccggcttgt tttgccaaat accctcgccc aatttattta attaaagatt
     4261 ggcgggaatc tgccctacga gcgaaacaga ttttgcaaga gcaacacatt gatttctatg
     4321 aaaatgctac ccttttacac atcgtcacag acaataacca agtgcaaggt gcggtatttt
     4381 cgctcactac aagcggtcaa atttcctata ttttttgcaa aaccaagcat cttattttag
     4441 ccgcaggcgg gattgctggg ctgtataaag ataatctcta cccggctgat gttatcggtt
     4501 cacttcatta tgtggcacaa caagccgggg caaccttggt taatcttgcc tttattcagt
     4561 tcattcctgc ctttgtcgag ccaaaataca aggtgctatt tggcgaacat acattgaagt
     4621 atgtcaccca aatcaccgat tctaagggta acaatctatt tccacactta aatgccgagc
     4681 aatttgcaaa aatggtgctg gaacgtagcc attatgctcc tttcagcctt gattttgccg
     4741 gcgtggagtt cgatttagtg atgatgaaac atttgcttga aaaccctcac gaaaaaggca
     4801 tttaccttaa atacagcccc aaattgtatg aagacacgga agagttttat accgtctatt
     4861 tgaattggct caaaaatgaa gtcgggattg atttagtgca agataagatt gcaatcaagc
     4921 cgtttgctca tagctgtaac ggcggcattc aaattaatca atggggcgaa agtgcagtaa
     4981 aagggctatt tgcgattggt gagatttctc actgcattga aggggcaaac cgtatgggtg
     5041 gtaactcagt cggcggtggc ttagtgtttg ccaaacgtgc ggtatcggaa attgttcgtt
     5101 cgctagaaca gaatgatttg caaaaaaaca gcgaaatctc accgcttgca atggcagaaa
     5161 aagcattaaa tcagcttgct aattcaactg ctaatctaga actaactgcc agtgaagtgc
     5221 tttctactat tcgagagaaa atggcgttat acgccaatgt gtaccgcact cggagcaacc
     5281 tcaaactact acttgaggaa ttaaaccgtt tggaacaaga atttgaccca atctatcacg
     5341 ctcaatatca aggcattgaa atttacaatg cgttaaaaac cgctcaatta gtggtcaatc
     5401 aaatgctaaa tgagcagagt ttaggcgcgc actacttaga tgaacaaaat tagtctataa
     5461 tagccaactt atttaaaaat aataaattag gagtataaat gaataactac ctacttaaat
     5521 taaaaccaat gacagcggtc atactttcgc ttttgacggt ctttatctta ggttttacaa
     5581 tgattgggct tggctgggtg cctcaaattt caattctagc cgtgattgta atgctgctac
     5641 ttttcggctt aatcaataaa attccgttta aaaatatgca agagggtatg gcaagcgggc
     5701 tgatgtccgg tattggtgcg gtttacctat tcttttttat tggattattg gtttcagctt
     5761 tgatgatgtc tggtgcgatt ccaaccttaa tgtattatgg cttaagtgtg atttcacctg
     5821 aattatttta catttctgca ttcgcattaa gttctgtagt aggtattgcg ttaggcagta
     5881 gtttaaccac aaccgccacc atcggtgttg cttttatcgg tatggcttct gctttcggtg
     5941 cgaaccctgc gattgtagca ggtgcggtgg tttcaggggc gttttttggc gataaaacct
     6001 ctccactttc agacactact accattgctg cttccgtagt gggcattgat atgttcgctc
     6061 atatccgtaa tatgctttat accaccatcc ctgcgtggat tttaacagca ttattccttt
     6121 ggtttttaac cgaacctact gatgcacaaa atttagcaaa tatagagaac ctaaaaacca
     6181 atttgcaaga aacaggatta atacacggct actctttgct accttttgtt acgttaattt
     6241 taatggcaat taagcgtgtt aattcaattt atattattgt aactacagta acactctcgc
     6301 taattattac ctatatccac agttcgccaa cccttgaaca gctagggaat tatttcttta
     6361 ccagctataa acctgttgaa ggcgtagatt taggcgaagt ggcatcatta gtctctcgtg
     6421 gtggcattaa tagtatgttc tttaccatca ctattgtatt gcttgcgtta agtttaggtg
     6481 gtcttttaca aatcctcggc attttaccgg cactacttaa cggcattagc ggctttttaa
     6541 ccagcacagg acgtgttact cttgtagttg ccagcactgc ggtgggaatt aacgtcttaa
     6601 tcggtgagca atatttgagc ttattgttat caggtaatac tttccgctca acttatgagc
     6661 gtttaggcct agaagtgaaa aacttatctc gcaccattga agatgcaggc acggtaatca
     6721 acccattagt cccttggggc gtgtgcggtg tgtttatcag tagcgtatta aatgtaccgg
     6781 tgttagatta tctaccatac gcattcttct gttatatctg tttaatcctt accttaattt
     6841 ttggatttac cggggtaaca atcagtaaaa aagctaacta atatgtgaaa catgcctaca
     6901 aatttgtagg cattttcttt tcattagagc tgaagaacag cttgtttggc taactctctg
     6961 gcgagtttat caatatgcaa tacatcagca atttcactga cttgaattgg agcaatattt
     7021 tccaccaccg ttctattcac gttcacaata tccgtaaagc ggatttgctc gtttaaaaac
     7081 gcctcaacgg caatttcatt ggcggcattc atcgctgttg tcgcatactg tccttctgca
     7141 aaagcctcaa tcgctaattt taagttcggg taacgggcaa aatccggctc gataaaggtt
     7201 agctctttta atttaaagaa atctaatggt ggcacaccag cattaattcg gtttggatat
     7261 gccatcgtgt gagcaatcgg cgtacacata tccgggttgc ccatttgagc aatcaccgag
     7321 ccatcaatat aacgcaccat cgaatgaata attgattgtg ggtgaatgat gatatccatt
     7381 tcctcggctg ttgcattaaa caaccagcgg gcttcaatat actccaagcc tttgttcatc
     7441 attgtggctg aatcgactga aattttctta cccatagacc aattggggtg agcaactgct
     7501 tgagccggtg taatcgcatc aaattcattt aatggcttag tacagaacgg tccacccgat
     7561 cctgttaaaa taattttact gacacccagt tcagcgagtg gacaaaaccc gactttttgc
     7621 tgtgcctccg gtggaagcga ttggaaaatc gcattgtgtt cactatctac cggtaagagc
     7681 ttcgcaccgg atttacgagc ctcatcaata aaaatttgcc cacaggttac cagcgattct
     7741 ttatttgcca acaatacggt tttacccgct ttcaccgcag aaagtgtcgg taataaccct
     7801 gctgctccta caatagcagc cattaccata tccacttcgg aatgtgcagc aagctcacaa
     7861 atagctgctt gaccggctaa cacttcagtt ttagacccca aagttgccaa tgccgttttt
     7921 aatgcttgtg cggatttttc atcatccatt gccgcaaaag tcggctgata ttgacgacat
     7981 tgctccagca ttaattcaac attctttcca ccaactaacg caaacacctc atattggttt
     8041 gggttatgct caactaccga taaagtgctt ttaccgatag aacctgttga acctaaaatc
     8101 actaattttt tcattttgtt tctctttatc taatgactga taagggcgaa agatttttcg
     8161 cccctacgcc gtaattatgc ggatactcat tcgttgtttg taaattgttt agcaaaaaca
     8221 accgcttgta gattaactcg aaagccgttt tgcttcgata acatcatcta attgagcgat
     8281 acgagccaat aatttattca aaatttcaac gttgttaagc tgaatttcca tatcaatggt
     8341 ggcaaggcta cgtttcacat cggttcggct ggaaacgcct aacacgttta ctttttcatt
     8401 tgccataatt gcactgacat ctcgcagtaa gccgttgcgg tcattggcaa tcactcgaat
     8461 ggttaagctt aaaccagagg tatagccttc gccccaatcc gcctccacaa ctcgttctgg
     8521 gttgagactt tgtaattcaa acagttgctc acaatctgca cggtgaatcg aaatccctct
     8581 gccttgtgtg atgtaaccca cgatttcatc acccggaatc ggctggcagc aacgggcaat
     8641 ggaatgcatt aagttcccta cgccctctac aatcacatag cctttgcttg gcttcggctg
     8701 attggtgttt ttattcacct gtttaagtac cgcttcgtct tcttgttcgg cggtcggttt
     8761 aattaatttt gattgcaaga agtgcattaa ctgatgaaga cgaatatcgc caccgccaat
     8821 accggcatag agatcatcaa actgttttaa gttatagcga ggcagagcat attcttcaat
     8881 ttgcttgagc gtaaaaccga atttttccat ttcggcttca agggcctctt tgccgattgg
     8941 aatatttttc tctcggtcta attttttaaa ccacgcaata atttttgagc gagctttgcc
     9001 tgtattcaca aaaccggtat tcggattgag ccaatctcgg cttgggttcg gctctttttg
     9061 ggtgataatt tcaacctgat cgcccatttg cagatgataa gtgaatggca caatccgccc
     9121 tgccactttt gctccaatgc aacgatgccc gatttcacta tgaattgcat aagcaaaatc
     9181 aagcggcgta gctttttgcg gtaaatcgat cacctcacct ctcggggtaa aaacataaac
     9241 acgatcatca aaaatttgtg accgcatttc cgccaccata tcgcccgaat cggcaagatc
     9301 attttgccac tcaaggagtt tacgcaacca gacaattttt tcttcgtagc ccgaacgccc
     9361 tgcggttgct ccctctttgt atttccagtg agccgccacc ccaagctcgg catcatcgtg
     9421 catttgctgg gtgcgaattt gcacttcgat ggttttatcg ccctcgccta atacaacggt
     9481 gtgtaatgat tgatagccgt taggtttcgg gttagcaata taatcatcaa aatgttccgg
     9541 caaatgggta tatttggtgt gaataatgcc taatgccgtg tagcaatctt ctagtgttgg
     9601 cactattacc cgcactgccc gaatatcgaa aagctgatta aatctcaacc gttttttctg
     9661 cattttcttc caaatgctgt agatatgttt cgggcgtcca taaatctgca cattcttgat
     9721 ttcaggactt aaacaagcgg tcagatctgc tacaaaattt gcaatataac gctcacgatc
     9781 cacacggcgt tcgcccaatt caaatttagc aatttgagtg taagagacag ggtgtaaaat
     9841 gcggaaacag taatcttcca gctcccattt gagctgcccg atacccaatc gattggcaag
     9901 cggtgcataa acgtgagaac attctttagc ggcgagaacg gtatcttctt cggaatggtg
     9961 gttactatca cgcaggtagg caattcgttc ggcaagttta atcaccacac agcggaaatc
    10021 gtccaccatc gccaacaaca tgcgacggat attgtcgatt tgcagatccg acacattatt
    10081 ggcactaagc tggcggatat tctccatttc gagtacgcct ttaactaagt ttttgatgtc
    10141 gttactgaaa tcttctttta attgcaccaa gtcgatcaca ttgtgtttta ccagaggaaa
    10201 aagcattgcg gcaactaagc tgtcatcgtc catattcaag ccgtgcaata cttcaaccat
    10261 ctcaatgcca taccacatca gactatagtc ggtatccagt ttttcctgtg cataactcca
    10321 cgcattgtga atctgctcaa aagtcacagg agacatattc aggcttgcac accaactcga
    10381 caactcaaaa ttattcggtt caagttgatg ggaataacga attgctacca taaggcctcc
    10441 ttgtaaattt ttgtggaaat tagaccgctt gtacagctta aaatggagtt ttattatacg
    10501 tggaaattca gaaaaaattt acccctaatc gaaaatttaa tccaagttat cttatcctct
    10561 ttactcctta agaggtagca accttgtgat aaatcaaacc tatcaacaca atcatttgca
    10621 cgacttcacg ctcttgatta aaatacttgc gtttttattt tgatctttat ttttgtgggt
    10681 agcaatgaca attttagctt taggaatcaa ccataaaacc gcctctgtgg gtttaagaga
    10741 gaaagtggcg tttgtagatg acaaacgtaa actggctctt gaacaaatcc aaacgagcgg
    10801 attggctgaa agcgtggtca ttctctctac ctgcaaccgc accgagctct acttccacca
    10861 gcctaatatt tctccccgtg aagagagcga ggaaaatatc caatggcgtg aacaatgttt
    10921 ccgctggttt gcccaaattc atcaacttga tgaaagcgag ttgcgtgaat gtttatattt
    10981 taaacaaaat ttagaagccg ctaaccactt aatgaaagtg gcaagcggat tagattcact
    11041 aattttaggc gaaccacaaa ttttagggca ggttaaacaa gcctatcaat atagcgaaga
    11101 tttctaccaa catcagcaaa aagcgatgtt caccaagcta tcacgcttgt tccaacgcac
    11161 ctttgccacc gcaaaacgag tacgttccga aaccgaaatc ggcagccaag cggtgtcagt
    11221 tgcttatgca gcttgcggtt tagcccatca aattttcgat aattttggca agttacgctt
    11281 tttgctggta ggggcaggcg aaaccattga attagtcgcc cgctatttaa ttcaacacgg
    11341 ggcgaaaaat ataatgttgg caaaccgcac ccatattcgg gcggaaatgt tggcggaaaa
    11401 actaaacgct ccaatgcaaa ttctgtcgtt aagtgctttg caactcggtt taaaccaagc
    11461 tgatgtagtt attagctcca ccggtagccc tgatacccta atcagtaaag aaatggtgga
    11521 aattgcgcaa aaacaacgcc aatttgaccc acttttgctg attgatattg ccgttcctcg
    11581 tgatattgac gaaaaagccg gcgacttaga gggcgtttac gcttatagtg ttgatgattt
    11641 acaaaatatt atccaacgca atatggctca gcgtgaagaa gccgccaaac aagccgctga
    11701 aatcgtcaaa gaggaaagca aagcattttt tgaatggtta aaacaacagc agtctagcga
    11761 tttaatcaaa cgctatcgtc aagatgcgga gcaaacccgc caagaattgt tggagaaagc
    11821 cctacaagca atcagtcaag ggcaagacag ccaaaaagta ttaagtgagc taagctacaa
    11881 actcaccaac cagttactac acgccccaac ccaagcgtta caagcaatgg caaaaagtgg
    11941 caactccacc ggcttacaaa gtttttcaag agcattacgg ctagaagaat gatgctcagc
    12001 acattctttt aggcatattt gcaaaaaatt gaacattttt aaccgcttgc ggatgcacgc
    12061 cgtgcgtccc tccccgtgtt cccgatcttc ttctaatttc aacttcccca aatttccgct
    12121 ataataagcc aatttttgca accattttgc aaataaccgg atatagagga tacaaaatga
    12181 ctcctgttgt tgccctagtg ggcagaccta atgtcggcaa atcgacttta tttaaccgtt
    12241 taactcgtac tcgagatgcc ttagtagcag atttccccgg cttaacccga gaccgtaaat
    12301 atggtcacgc taatattgcc ggctacgatt tcattgtaat cgacaccggt ggtattgatg
    12361 gtacagagga aggcgtggaa gaaaaaatgg cggaacaatc tttattggcg attgaagaag
    12421 ccgatgtggt gcttttcttg gttgatgccc gagccggatt attacctgcc gatgtcggca
    12481 ttgctcaata tttacgccaa cgtgaaaaaa ccacggtggt ggttgccaat aaaaccgatg
    12541 gtattgatgc cgactctcac tgtgccgaat tctatcaatt aggcttaggc gaagtagaac
    12601 aaattgctgc agcacaaggg cgtggggtta cgcagcttat cgagcaagtg ttagctcctt
    12661 taggcgaaca gctaaatgcc gagcaattta accaagaaca agcgggcgaa aatgctaaaa
    12721 atgttgcaaa tgaagaaaca gacgaatggg ataccgaatt cgactttgag aacgaagaag
    12781 atgcggcatt attagatgaa gccttggcag aagaagcaga agagtcgatt gaagataaaa
    12841 atatcaaaat tgcgattgtc ggtcgtccga atgttggtaa atcaacactg accaaccgca
    12901 ttttaggcga agagcgtgtg gtagtttatg atatgccagg aacaacccgt gattctattt
    12961 atattccaat ggagcgtgac ggtcagcaat ataccatcat tgataccgcc ggtgtgcgta
    13021 aacgtggcaa agtgaattta gcggttgaga aattctcggt aattaaaacc ttgcaagcca
    13081 ttcaagatgc aaacgtggtg ctattaacta ttgatgcccg agaaggtatt tccgatcagg
    13141 atttatcact actcggcttt attctaaatg ctggtcgttc attggtgatt gtggtaaaca
    13201 aatgggacgg cttgtcgcaa gatattaaag atcaagtgaa atcagagtta gatcgccgtt
    13261 tagattttat tgattttgcc agagtgcatt ttatctcggc attgcacggc tcaggcgtgg
    13321 ggaatttgtt tgattcagta aaagaagcct acgcttgtgc aacgcaaaaa acctcgacct
    13381 caatgctgac tcgcattttg cgtatggctg ctgatgaata ccaaccacca ttggttaatg
    13441 gtcgccgagt gaaattaaaa tatgctcacc cgggtggcta caacccacca attattgtga
    13501 ttcacggcaa tcaggttgaa aaattagcgg attcttacaa acgttattta agtaattatt
    13561 tccgtaaaag tttaaaaatt atcggctcgc caattcggat tttattccaa gaaggca
//
LOCUS       DANLUT010000054        13518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLUT010000054 DANLUT010000000
VERSION     DANLUT010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(66..374)
                     /locus_tag="PXB38_001227"
     CDS             complement(66..374)
                     /locus_tag="PXB38_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5353555.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDDQALIQAVGNLKYTAKVIE
                     "
     gene            complement(376..744)
                     /locus_tag="PXB38_001228"
     CDS             complement(376..744)
                     /locus_tag="PXB38_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353556.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWRGE"
     gene            complement(719..1825)
                     /locus_tag="PXB38_001229"
     CDS             complement(719..1825)
                     /locus_tag="PXB38_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL5353557.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(2065..3108)
                     /locus_tag="PXB38_001230"
     CDS             complement(2065..3108)
                     /locus_tag="PXB38_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5353558.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEGSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(3212..3496)
                     /locus_tag="PXB38_001231"
     CDS             complement(3212..3496)
                     /locus_tag="PXB38_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353559.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(3526..3711)
                     /locus_tag="PXB38_001232"
     CDS             complement(3526..3711)
                     /locus_tag="PXB38_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5353560.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(3708..4274)
                     /locus_tag="PXB38_001233"
     CDS             complement(3708..4274)
                     /locus_tag="PXB38_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5353561.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGIAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            4383..5336
                     /gene="msrP"
                     /locus_tag="PXB38_001234"
     CDS             4383..5336
                     /gene="msrP"
                     /locus_tag="PXB38_001234"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL5353562.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            5336..5920
                     /locus_tag="PXB38_001235"
     CDS             5336..5920
                     /locus_tag="PXB38_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL5353563.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
     gene            6017..6668
                     /locus_tag="PXB38_001236"
                     /pseudo
     CDS             6017..6668
                     /locus_tag="PXB38_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            6920..8110
                     /locus_tag="PXB38_001237"
     CDS             6920..8110
                     /locus_tag="PXB38_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL5353564.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPICISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGEAGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFDLDWALEKIR
                     EVLA"
     gene            8185..9696
                     /gene="nhaC"
                     /locus_tag="PXB38_001238"
     CDS             8185..9696
                     /gene="nhaC"
                     /locus_tag="PXB38_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5353565.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     IAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            9813..13412
                     /gene="putA"
                     /locus_tag="PXB38_001239"
     CDS             9813..13412
                     /gene="putA"
                     /locus_tag="PXB38_001239"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL5353566.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKQFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQDPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQGEWANTSPAVRAKCLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAASLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNLQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGIGKGDLA
                     SQVQALIAIVTVGSQAVVEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
BASE COUNT         3938 a         2818 c         2909 g         3853 t
ORIGIN      
        1 attagatggg gaaaaaagga aggctaaatt aaaaaagctc aaacaataat gtttgagctt
       61 tggttttatt caatgacttt tgcagtatat ttgaggtttc cgaccgcttg tatcagggct
      121 tggtcatcca cactttcttt taccaccaca gtcgcttttc gctctttcat tgaggctttg
      181 gtggaaatca caccttctac tgctcgtagt tctttattga ctaaataaac gcagagctgg
      241 cagtacattt ccggaatatg gaggacgacg gttttctctg cttgtttcgt ttcaatttga
      301 gctgtttttt cttgtgcgta gcttgaatga accaaaccaa aagccaacag catcgttgcg
      361 atatattttt tcattttatt ctcctctcca catttccaaa atgtaaggca atacataagg
      421 gtaagttaaa aagaacatca ccaccacaga aactacccaa tacaaaatga ccagggttct
      481 gcgggagaag tatttggtgc agatgatttt gttggaaaaa ttcagcaacc agaagccata
      541 gccaaacgca gcgagcgaaa tcagcaacat cggcagttgt agaaactcca gttggtttag
      601 ctccatcaac caaggggaag agatgccaaa cactaaataa accagtggtc caatacaaca
      661 gaatgtggag gtcaccgccg acactatggc ggtcacgcac attgtgataa atttatggtt
      721 ataactcttt agagatgaat tcatagccaa attctttcgc ctcaaacgag tttaacgggt
      781 caccacctac ctcagcataa gggtagccaa agttattcag tggtgtaagt tccggttgtg
      841 gatataaatc gaaatcacgt ccgtgattga agcctaccca gttcatttcc cagttgccga
      901 ataagtattt cgagaccgct tgaacatcag catcatccac gtcttttttc tcggctaaac
      961 gcattttagc gacatcggca gaatctacag gcacccagcc gaagcctgct aaatagaact
     1021 ctgcacggca gtgctgcccg ccgctttcat tcgccacgcc atcttttgag ctaccaaatg
     1081 cggttttgga atattgcccc atttttaccg cttgccctaa acgaatacca aacacttcac
     1141 gagcaggaat gttagaggca cgagcaagtg ctacaaacac cgagttgatg tcggtacatt
     1201 taccttttag cactttggtg gtgagaattt tctccacatc gccatcgcca cagcctagca
     1261 ccgagttatc acgttccata ttatcaacaa tccacttgtg gataagttcc gcttttttca
     1321 acggattttg ctcgttaccc acaattttat cggcatattc tttcacaata ccgtctgttt
     1381 taatgtgagc cgttggtttt aaatactcca atacatcaac agaataagtg attttctccg
     1441 gcatttggta atttgccaac gccccttgag ccataggctc acgatcttgg gtttggatca
     1501 ccattttcac ttttagatca cgctttggtg catcagtatc ccaagtggca aacaaggttt
     1561 ttgcaccata agcgttattt tctgtgatat aggcgttttt gtaacttccc tcaaactcta
     1621 tcgattttac cgtttgataa tcggtatcag acggcaacgg aatccacaaa ttagttgttc
     1681 ctttcgagcc ttgtggcaca actaaatcat aagattgcgt aaattcgtaa gtgtgggtag
     1741 tggtgtggaa attgttctgt tgaacaggag cagcaaaagc cgtcgcacag cttgaagcca
     1801 ccaaagaggc aataagttta ttcattgaaa tgatccttat tagagtgaaa aaacagttaa
     1861 aacttaacat attaagtatt ctaactacgg attgaggttg catattagcc aatcgagatg
     1921 ggaaaagcaa tgggggagat gattttttag atagtgcaag cgtccacgct tgtactagaa
     1981 acaaagctaa aataatcaat aggcacaagc gtaaacgctt gcgccatcag agagaataac
     2041 aatcggtcaa aaatcctcaa aattttacaa atagattttt tgccctaatt ttgcactttc
     2101 aaatacgctt tcgatcactt ttagcacaaa aatgacgtct tcgagtttga taattggctc
     2161 agcattgtga gcgatggctt ggtacaaatc atcaaacaag ttttgataac tgccttcggc
     2221 atttcgatag ggctggcgaa ccacattacc ttccacttca gtgtgtaaaa ttccccagtt
     2281 ctccttttct tcgatattcc aatctttgcc aataggttgt acgccatttt tcagcaaatc
     2341 ttcttgatta tcgggagttt gtttcagata agagcctaat tttccgtgta atacaaatgt
     2401 cgggcttggt tcacgagcat atcggctggc tttcagcacc actttaaaac cgttagcata
     2461 atagagctga atatcaaagt tatcatcaac caatgcccct tcgtgctgat aacgcacatc
     2521 agcatacacc gcctccggct tcccgaaaag atacaaagct tggtcaatta aatgtacgcc
     2581 taaatcatac actaaacctg taccaagctc gcctgattct ttccatactt taacattttt
     2641 ctctttcgca taacggtcaa aacgaatttc gcaatctacc aactctccca gtaaattttg
     2701 ctccattagc gattttgccg tcgcaatatg gctgtcccaa cggcggtttt ggtacacata
     2761 aagcaccttt ccttgccgct ttgcaagttc cgccaactct tccgcctcag ccactgttgc
     2821 cactaacggt ttttcaacta aaacgtgttt gcctgcaagc aatgactctt ttaccattgc
     2881 ataatgggtt tgattcggtg tggtaatcag cactaaatcc acttctggcg ttaaaagagc
     2941 gttgaaatcc cgcactgttt ctgcattcgg caaccattct gccgcattgt tagaggttcg
     3001 ttcatatacc tttacaatat taaaacgagc atcttgtttc aaaaacggga tatgaaaaac
     3061 tcggctggaa aagccggcac ctgcgatggc aatattgatg ggttgcatag acaatcctca
     3121 taaaattttg atgttatctg cttaaataaa caagcggtca aattttagga aaattttgca
     3181 aaaaacagat aaaatacgac cgcttgttta actaatcata ggttttgcaa acaatatctt
     3241 tttcttcaca aaacatttca ctgtggtttg cacggcattg cttttgtaca tttaatttgg
     3301 ctctgcctcg gctactatgt tcactacgat attcctgagt aaatggcttt agagtacaaa
     3361 tgtgaacctc tttggaatca agtggatctg agacaccaat tataatcggc atagggatac
     3421 cggcttgccc cgtaggagta accggcacga cacagccact taatagtatg cttaaactta
     3481 ttaaccaata acgcatattt ttctcctttt aaaatgtata ataaatcaga acggagcatc
     3541 tttatcgtta cagtaagctc ttaatatctt gcctaatttc ttggtatttt tattaaaatt
     3601 tcggcattta gggcatacca aaagatgcaa ctgcaaacgc atatgttgtt gcaaacgaag
     3661 tttctcatca caagactgtg aaataagttc tgttgcttgc ctgcatttca ttttgattcc
     3721 tctctaaacc aattacgaga taaacactct tgtaaacgta aacgagcacg atgaagtaat
     3781 acatttaagt tagagagaga aatttcacat tcttggcaaa tttccgcact actcatctcc
     3841 aaatgttcac gcatcataaa tactcgtgct tgctgggcgg gtaatttatt taaacaaata
     3901 tcaaaaattg cccaaaattc tttttggtaa gttgattgag ctatccccct ccattcagtt
     3961 acatcttgat gttccaacca atgatcgtgg cgatcgaaaa aggcacttgg tgattcttct
     4021 tcctcacata gagaactgac aggaatatgt cgttttcgtg ttctgagtaa atctaaaatt
     4081 ttgttcttta aaatagcaaa aatccaagtt ttaagtgcag cttctcgccg aaaagaggct
     4141 gaatgcttat aggcattggt taaggcatcc tgtacaacat cctcagctaa atctttatcg
     4201 gctagttgta gggtggcaaa tttaaccatt tgctttctaa tctcttctat ctgtgtagaa
     4261 gatagactct tcatatatct cctttaggga atacccaata aaaaattaca cttattttgt
     4321 aagaattcta gatcagctga gtccaaaata ataacaacaa ttcataaaaa aaggatagtt
     4381 cgatgaaaaa attaacaatt caagatgtta cacccgaaac tattttctac caacgccgta
     4441 aaattattac cgcgttaggt ttaggtattg cagcttctgc attgcctaaa gtaagtatgg
     4501 cagaaacaca aagacacttg caatcactac agtttaaacc ggatccaaat aaagggcttg
     4561 aactcactcc ggaaaacaaa gtaataggct ataacaattt ctatgagttt ggcgtggata
     4621 aaagtgcacc agcaaaaaat gcggcaaact tcaaaaccga tccttggaca ttggaaattg
     4681 gcggagaagt tgaaaatccg tttagcttaa atcatcaaca attgcttaat acgtttccac
     4741 tagaagaacg catttaccgt tttcgctgtg ttgaagcgtg gtcaatggtt gtgccgtgga
     4801 tcggctttga gttagctcgc ttaattgaga tggcaaaacc aaccagtaaa gccaaatatg
     4861 tggtctttca cactttatat gatcctgcac aaatgccggg gcaaaaaaat cgcttgctag
     4921 gcggtgggat tgattatcct tatgtagaag ctttacgctt agatgaagcc ttaaattcat
     4981 taacactact atccgtcggt ttatacggta aaaccctgcc accgcaaaac ggtgctccta
     5041 ttcgcttagt cgtgccttgg aaatatggct ttaaaagtat taagtcgatt gtgaaaatca
     5101 cctttgctga aaaacgccca ctcactactt gggaaagtct tgctccaaat gaatatggct
     5161 tttatgctaa tgtgaatcca aatgttgatc atccacgttg gtcgcaagca tctgaacgag
     5221 taattggtgc aggcgggtta ttatccgtca aacgccaacc aacactaatg tttaatggct
     5281 acgaaaatga agtggcaaat ttataccgtg gcttagattt aaaggtgaac tactaatgct
     5341 aacctggtta cgtatactca ttcatcttgg ctgtttatta ccgctagttt gggtagcaca
     5401 gctattatat acgggtaatg aaacaatatt aggtgccgat ccgattaaag agctggagca
     5461 ttttctcggt tatggtgcaa tcgtcatttt ttgtataatg tttctacttg gtattgccct
     5521 acaataccta aagaaaaacc agtatcaaat tttacgccgt ccattgggct tatgggcgtt
     5581 tgtatgggca gctctacata tttcaagcta tctattgtta gaattaagcc ttgatgtaaa
     5641 attatttttt agcgagcttg ccggtcgccc atatttgatt ttaggagcag ctgctttttt
     5701 cattctaagc ataatggcaa taacttcgct gcctatgcta aaacgaaaat taggaacacg
     5761 ctgggggacg attcaccagt gggcttatcc tgcattagta ttggcgatgg tacattatta
     5821 ttggtcggta aagagcgtaa cattcgatcc aattatcatc ggagtcttag tgctgtttat
     5881 tgttgctcat aaaatacagg ctaaatttgc aaaaaaatag caaaatcaca ccgcttgcag
     5941 cagtcaaact acatacaaaa aataaggggc tgtcctagat aacgactaaa acatccattt
     6001 aggttaagat aacccaatga gaaaaagtcg tctaagtcag tacaaacaac ataaactcat
     6061 tgaactgttt gtagcaggtg tcactgctcg aacagcggct gagttggtga atgtaaacaa
     6121 aaccaccgct gcctattact ttcaccgttt gcgattgctc atctatcaac atagccctca
     6181 tctggaaatg tttgagggtg aaattgaagc ggacgaaagt tatttcggtg gtgctcgcaa
     6241 aggtaaacga gggtgtggtg ccgcaggcaa aactgccgta tttgggctgt taaaacgtga
     6301 tgacaaggtt tataccgttg tcgtaccaaa tacgcaatct gccacacttt tgccgattat
     6361 tcgggaggaa agtgaagcct gatagccttg tttacaccga tttttatcga agctatgatg
     6421 tgcttgatgt gagtgaattt aaccattttc gtatcaatca cagcaaacac ttcgcagaaa
     6481 atcaaaatca cattaacgga attgagaatt tttggagtca agcaaaacgc catttgcgta
     6541 aatttaacgg catacctaaa gctcattttg agctgtattt gaaggaatgc gaatagcgtt
     6601 ttaatcacag tgacttaaaa tctcaaattt ccattttaaa acaattggtt aggggttgtt
     6661 taagttagtt atctaggaca gccctaaatt ttatagttgg aatttcaacg gagaaagtta
     6721 tctataaact tataaaagtt atagaaaatg gaggcatttt tgcttaaagt atgctatcta
     6781 ttcatattaa ttgcatagtt aatcaacaac tgaagaaaaa tgagaagtag atcataaaat
     6841 caacaaaaag tccgtgtttt ttagctaaag attgttaaac tcttttgtgt tacaagtttt
     6901 taacataaag gagtttttta tgtctacttc tcaacaactc atccaacaaa ccgaacattt
     6961 cggtgccaat aactacctac ctctacctat atgtattagt aaagctaaag gcatttgggt
     7021 tgaagatcct gagggtaatc gctatttgga tatgcttagt gcctactcag cggttaatca
     7081 agggcattgt catccaaaaa ttgtacaggc actaaaagat caagcagaca aagtaacgct
     7141 gacctctcga gcattttata acgatcaact tggtatttgg tatgaaaaaa tttgcaaact
     7201 cgctaataaa gagatggcat taccgatgaa tacgggtgca gaagcggtag aaacagcgat
     7261 taaaactgct cgccgttggg gttatgatgt gaaaggaatt gcagaaaatc aagcagaaat
     7321 catcgcttgt gttggcaatt ttcacggacg tacaatggct gcagtatctc tctcgtctga
     7381 tccggattat aaacgtggtt tcgggccgat gttaggtggc atcaaacttg ttccatacgg
     7441 tgatttagaa gcattaaaag ctgcgattac accaaacaca gcagcgtttt tggttgagcc
     7501 aatccaaggt gaagctggca ttcttattcc acctgaaggt ttcttggaac aggcttatga
     7561 actatgcaaa gagaataatg tgctgtttat tgctgatgaa attcaggcag gtcttgggcg
     7621 tactggcaag ttatttgcaa cagaatggga aggctttgag ccagatattt atattctagg
     7681 taaagcactt ggtggcgggg tgttcccaat ctcttgtgtg ttagcaaatc gtgatatttt
     7741 aggcgtattc aatcctggct cgcacggttc gacatttggt ggtaatccat tagcctgtgc
     7801 ggtatctatt gcctcaattg atgtactgtt ggaagaaaaa cttgcagagc gttcccgtga
     7861 gttaggtgaa tacttcttgg cagagctgaa aaaaatccaa aatccaatta ttaaagaagt
     7921 tcgtggacgt ggactgttta ttggcttgga gttacatcaa ccagcacgcc cattctgcga
     7981 aaaactcaaa gaaaaaggct tactctgcaa agagacccac gatacagtta tccgctttgc
     8041 tccccctttg gtgattgaaa aattcgattt ggattgggca ttggagaaaa ttcgggaggt
     8101 gttggcttaa ttgtcatttt ctctatattt tatcctacca aatcgccttt aacccttttt
     8161 ggcaggaagc aaaacagttg taaaatgctg attttgcaaa ctttttccaa aaatcaaccg
     8221 cttgtaaaag gtggctttat gtcaaacaga acagaaataa cagaccaaaa tatccgaatc
     8281 ccgtttcgct atgctatatt gcctgtgatt attatggtat cgattatggc ggtggctatc
     8341 atcaaatttg aagcctcacc tcacgttccg ttgcttattg gggcaattag tgccgctgtg
     8401 attgcgatgg cacatggcta ccgttgggag acaattgaaa aaggaattta tagaggcatt
     8461 cgtatggctt taccagcgat tgttatcatt attatgattg ggctaaccat cggagcttgg
     8521 ctaggtggtg gaattgtagc tacgatgatt tactacggct tgaaattgat ctctccgtcg
     8581 ctgtttttag taactatctc aataatttgt gctattgtga cccttgcgat tggtagctcg
     8641 tggtctacaa tgggaacaat cggtatagcg gcgatgggga tcgggtttag tctcggcatt
     8701 ccggcaccga tggttgccgg tgcggtgatc tcaggagcat atttcggcga taaaatgtcg
     8761 ccactgtcag acactaccaa tctggcagca gggattaccg aaaccaatct gtttgaacat
     8821 atccgccata tgtttatcac taccgtgccg gcgttcctga ttgcgttatc tgtctatttc
     8881 tattttggta tggaatttag agccgaaaat ctcgatcttg ctaaaattga agacattatg
     8941 caggcaatgc aggaacattt cttgatttcg ccttggttgc tattagtgcc tttattagtc
     9001 gtggtgttgg tggcaaaaaa agtgcctgcc ttaccggcat tagctgcagg gataattctt
     9061 ggttggctct gccacgtttt tgtgcaaggc ggtgatgtca gcgtagcagt gattactctg
     9121 cacgacggct ataaaattga gagcggccac gagatgattg ataagctgtt caaccgtggt
     9181 gggatcgagt cgatgatgta caccatttcc cttacgattg ttgcgatgac ttttggtggc
     9241 attgcagagc aagctggaat gttacattca gtagtggaaa aaatccttac ccttgcaaaa
     9301 tcagcaggta gcttaattag tgctacgatt gtatcggcat ttattaccaa cgtaacgaca
     9361 tctgagcaat atatttctat tttattacca ggcagaatgt atataaaagc ctatagggat
     9421 aagggactaa gttcgagaaa cctttctcgt gcattggaag acggaggaac agttacttcg
     9481 gttcttgtac cttggaatac ctgtggtgtt tatgcgttct caatgttgca agtgagtgct
     9541 tttgaatatg caccgtatgc aataatgaat tggctcattc cactgattgc gattggcttg
     9601 gcaaccttga atatcaaaat tgagcgattg ccaccggaag aattagccaa agaacctgag
     9661 gaaattactc tgccaaaacg tggttgttgt ccataattta tctaaatagt atttaataac
     9721 aataggttaa gttaaataac aagcggtcgg ttttatctta aaatttgcaa gtttatacag
     9781 aaatttgatc gcttgctgta tagaaaggaa aaatgatgtc ataccaactt ttacctaaca
     9841 ccactatccg tcctgaattg agccgtcatt accgctttga tgagcaaacc ctggtgcaaa
     9901 atctgataga acaagcacat tgtgatgaac aggctgataa cattaaaaag ctcactaccc
     9961 aattagtcgg taaagtccga actgcacgcc agaaagcaag cggggttgat gcgttaatgc
    10021 acgaattttc actctccagc caagaggggg tggcgttgat gtgccttgcc gaagcattac
    10081 tacgcattcc tgacaccgcc actgcggata aattaattcg agacaaaatt gccaaagggg
    10141 attggcgttc acacaccggc aacagcccct ctctgtttgt gaatgcagcg gcgtggggct
    10201 tggtgattac cggcaaattg gtttcaaccc acagcgaaag ctcactctca tcagcacttt
    10261 cacgcctgat cgccaaaggt ggagaaccgc tgatccgcaa aggtgtggac gtagcaatgc
    10321 gtatgctcgg caagcaattt gtaacgggcg aaaccattca acaggcgatt aaaaacggcg
    10381 aaaaacgctt cgcaatgggt tatcgttaca gctacgatat gctgggcgaa gcggcactca
    10441 ccgccgaaga tgccaaacgc tattacaacg actatgttgc ctctattcac gctgtgggtg
    10501 ccacctcgaa aggcttgggc gtgtataaat cctcgggtgt gtcggtcaaa ctctccgcca
    10561 ttcaccctcg ttattccctt tcccaacacc aacgtgtgat ggacgaactc tatccacgtc
    10621 tgaaagaact gttcttgctg gcgaaaaagt atgacatcgg cttgaacatt gatgccgaag
    10681 aagccgaccg cctcgaattg tcgcttgatt tgatggacag actgcttgcc gaccctgatt
    10741 tggcagggtt taacggcatt ggttttgtgg tgcaggcgta ccaaaaacgt tgcccgtatg
    10801 tgatcgagca tttaattgag accgcccgta aacataatcg ccagctaatg attcgcttgg
    10861 taaaaggcgc atattgggac actgaaatca agcgggcgca aatggacggt gcagagggct
    10921 atccggtctt ctcccgtaag gtgcataccg atttgaacta catcgtttgt gccaaaaaat
    10981 tgctggcggc gcaagatgtg atctatccgc aatttgccac ccacaacgct caaactctcg
    11041 ccaccattta ccacttggca cagggcaaac gttttgagtt tcaatgcttg cacggtatgg
    11101 gagagagctt gtacgaccaa gtggttggca gcgataatct taacgtgcaa tgtcgcattt
    11161 atgcccctgt cggcacttat caaaccctgc ttgcctattt agtacgtcgc ttgttggaaa
    11221 acggagcgaa cagctcattt gttagccaaa ttgtggatga aaatctcagt gtagatgatc
    11281 tggctcaaga ccctgttcaa aaagcagaac tgactaatgg cactatgcac ccgaaaattc
    11341 cattgccagt cgatttattt gacgacaatc gtgttaattc caaaggctat gatttaactg
    11401 atgcagtaag cctacaaaat ttagaaaatg ccctcaatga acttaccaaa cagcattacc
    11461 gtgctgaacc acagctggca aatgataata caagcggtca agaaagccgc aaaatttaca
    11521 atccagcgaa ccaagctgaa ttagtcggcg aagtgattga tgccaccgaa aacgatatgg
    11581 aacaggcgtt tgaaagtgcg gcggcgttcc aaggtgaatg ggcgaatact tcccctgcgg
    11641 tgcgtgccaa gtgcttagaa aaaatggcgg acttgatgga agccaatatg ccacaactgt
    11701 tcgatttggc ggtgcgtgag gcaggcaaaa cgctcaacaa tgcaattgct gaagtgcgtg
    11761 aagccgtcga tttctgtcgt tattatgcca aagaggtacg caacaacatt gaagcataca
    11821 aaaatccgcg tggcattgta gtagcaatta gcccgtggaa ctttccgtta gcgatttttg
    11881 tgggtgaagt ttcatctgcg ttggtggcag gcaatgtggt actagcaaaa ccagctgaac
    11941 aaacttcgtt aatggcacat tatgctgcca gccttttcta ccaagcaggt gtgccgaaag
    12001 cggcgttgca atgcttaccg ggtagaggaa aaacggttgg ggtggcgttg gtggcagatc
    12061 atcgtgtgaa cggcgtgatt tttactggtt caacagagac agctaaaaac attaaccgca
    12121 atttgcacaa aaacgagaaa attataccgc ttattgccga aactggcgga caaaatgcaa
    12181 tgattgttga tagctcggca ctgggcgagc aggttgtgat agatgtttta aactccgcat
    12241 ttgactcagc agggcaacgt tgttcggcat tgcgtgtgct gtatctgcaa cgtgatgttg
    12301 ccgatcacat tctcacaatg ctcaaagggg caatggcgga gttgaaagtt ggtcttccac
    12361 aacacttaac taccgatgtc ggaccagtaa tcgataaagt cgcacaacaa cgcttgctcg
    12421 atcatattga aaacctcaaa aaatcggcga aaagttacta tcaggtggct atctcctctg
    12481 aaattgccga aaatggtatt ttcgtaccgc caacgctgtt agaaatagat catatcagcc
    12541 agcttaaaca cgaagtattc ggaccggtgc tacacgttat ccgttttgat gcggataaac
    12601 tcgaccaagt gattgccgac ataaactcca caggtttcgg tctaaccagc ggtttgcata
    12661 gccgaattga tgaaacggtg gatttatggt tgaaatctgt ccacgctgga aatctgtatg
    12721 taaaccgtaa cacggtaggg gctgtggtcg gcgtacagcc attcggtgga atggggttat
    12781 caggaactgg gccgaaagct ggcgggccgc tctatctaca acgtttagta aacctccaag
    12841 aatggacatt gaacggttta cagggcaatg cacaagcggt cgattttgac ttaaattttg
    12901 caatccgcaa ggttctaagt ggagctgagc agcaaacggc gttagatctg gccaaaagcc
    12961 ttgcacgccg ctcgccactc ggaaaaacct acccaatgca gggtattacc ggcgagaaaa
    13021 acgagatgat tttcgtggct cgcccacaga ttgggattgg caaaggtgat ttggcttcac
    13081 aggtgcaagc cttgattgcc attgtaacgg tcggcagcca agcggtggta gaaaaatcaa
    13141 gcgagctggc aaaacacgcc tctgcctttg gtaagaaatt acaggtggtg gatgatttca
    13201 acagtctcga tcacctcagc acactcattg tgcttgacct gctttctagt gaggaaaaat
    13261 tgcatcatgc cgaacgcaaa ggggcgattt tgacctacat cgaagggctg gatttagcgc
    13321 tctcactgct gccgttggta cacgagaaag caatcagcat caacaccgct gccgcagggg
    13381 gaaatgccag cttaatgagt gaaatggatt aagcaacaaa caaaagagta taagagggca
    13441 gatcacaatg atctgccttt ttattttaag gggctgtcct agataacgac taaaacttcc
    13501 attaggttaa gataaccc
//
LOCUS       DANLUT010000055        13481 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLUT010000055 DANLUT010000000
VERSION     DANLUT010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13481
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..776
                     /locus_tag="PXB38_001240"
     CDS             <1..776
                     /locus_tag="PXB38_001240"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL5353567.1"
                     /translation="TDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGTPEKTYKE
                     LIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLENINILNG
                     MAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIKTLTEDTR
                     IANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEGAVNHLWT
                     ISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            857..1999
                     /gene="nagA"
                     /locus_tag="PXB38_001241"
     CDS             857..1999
                     /gene="nagA"
                     /locus_tag="PXB38_001241"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL5353568.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2081..2395
                     /locus_tag="PXB38_001242"
     CDS             2081..2395
                     /locus_tag="PXB38_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL5353569.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2474..3664)
                     /locus_tag="PXB38_001243"
     CDS             complement(2474..3664)
                     /locus_tag="PXB38_001243"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL5353570.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFVNRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(4027..5331)
                     /locus_tag="PXB38_001244"
     CDS             complement(4027..5331)
                     /locus_tag="PXB38_001244"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL5353571.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(5341..7167)
                     /gene="oadA"
                     /locus_tag="PXB38_001245"
     CDS             complement(5341..7167)
                     /gene="oadA"
                     /locus_tag="PXB38_001245"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL5353572.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(7207..7461)
                     /locus_tag="PXB38_001246"
     CDS             complement(7207..7461)
                     /locus_tag="PXB38_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL5353573.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(7651..8838)
                     /locus_tag="PXB38_001247"
     CDS             complement(7651..8838)
                     /locus_tag="PXB38_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5353574.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFREAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANPPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(9113..9850)
                     /gene="pxpA"
                     /locus_tag="PXB38_001248"
     CDS             complement(9113..9850)
                     /gene="pxpA"
                     /locus_tag="PXB38_001248"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL5353575.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDSEHAVVFAERIKKELQAKGILVKA"
     gene            complement(9837..10766)
                     /locus_tag="PXB38_001249"
     CDS             complement(9837..10766)
                     /locus_tag="PXB38_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL5353576.1"
                     /translation="MIYIEKIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSASTDLKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSHIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYSAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(10763..11410)
                     /gene="pxpB"
                     /locus_tag="PXB38_001250"
     CDS             complement(10763..11410)
                     /gene="pxpB"
                     /locus_tag="PXB38_001250"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL5353577.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGSQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(11504..12328)
                     /locus_tag="PXB38_001251"
     CDS             complement(11504..12328)
                     /locus_tag="PXB38_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL5353578.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVGQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(12462..13277)
                     /locus_tag="PXB38_001252"
     CDS             complement(12462..13277)
                     /locus_tag="PXB38_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353579.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEAADFAKVEAVQPKAIFPFYVPA
                     ENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHFAAY
                     NDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNGELN
                     TYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISIGAT
                     RYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         3682 a         2998 c         3026 g         3775 t
ORIGIN      
        1 aaactgatca cgatgtgagt gtttgggctg ctcgttatat tgttgatcgt atcaatgcat
       61 tccaaccaac caaagaaaaa ccttttgtgc ttggcttacc aaccggcggt acgcctgaaa
      121 aaacctataa agaattaatt aaattatatc aagctggtga agtgagcttt aaaaatgtgg
      181 tgactttcaa tatggacgaa tacgtcggct tacctaagga acaccctgaa agctaccaca
      241 gttttatgtt caagcacttt tttgaccacg ttgatattcc gcttgagaat atcaatatcc
      301 tcaacggtat ggcggaagac gtgaatgcag aatgcgaacg ttatgaagaa aaaatccgtt
      361 tttatggtaa aatccatctg tttatgggcg gggtcggtgt ggatgggcat attgcgttta
      421 atgagcctgc atcttcgctt tcttcccgca ctcgaattaa aacgcttacc gaagatactc
      481 gcattgcaaa ctcacgtttc tttaacaatg acgtaagcca agtgccgaaa tttgctttaa
      541 ccgttggggt tggtacgttg cttgatgccg aagaagtgat gatcttagtg accggccata
      601 acaaagcctt agcattacag gcgtgtgtgg aaggggcggt aaatcatctt tggaccatca
      661 gttgcttaca attacatcgc cgtggtatag tggtgtgtga tgagccggca acccaagagc
      721 tgaaagttaa aacagttaag tatttcaaag agttagagaa aaacgtagct cgctaattct
      781 gattttacaa gcggttaatt ttgtaatatt ttttacaaaa acgaccgcct gttagcattt
      841 aaagagaaga gagaaaatga accattatgc cttaacaaac tgtgtgattt acaccggtga
      901 acaagtgctt taccaacacg cattagtggt gaaagaagat aaaatcgact ccattgtttt
      961 ggaagaaaat ttaccgctgg atctgcaaaa aatcgaccta aaaggagcga atctttcagc
     1021 cggttttatt gacttgcaac tgaacggctg cggtggggtg atgtttaatg aagaaatcac
     1081 tacccgcact ttagaaatta tgcaggaaac caatctgcgt tcaggcacaa ccagctattt
     1141 accgactttt attacctcgc ctgatgaggg agtgaaacaa gcggtggcgg taatgcgtga
     1201 gtatttgtcg aaacacaaaa accaagcact cggcttgcat ttggaaggac cttatctaag
     1261 tgtggcaaag aaaggagtac accgtccgga atttatccgt gaaatcagcc ctgaaatgtt
     1321 agatttctta tgcgataacg gcgatgtaat tacgaaaatc acgattgcag cagaaaaccc
     1381 gaccgcagac catatcaaac gctttaatga tgcaggaatt attgtatcta tcgggcattc
     1441 caatgccact tttgctcaaa ccaaacagcg aattgccgaa ggggcagcgt ttgctacgca
     1501 tttacacaat gcaatgtcgc cggtcagcaa cgggcgtgaa ggcggtgtag taggggcggt
     1561 gttggatagc gatatttaca ccggcattat ttgcgatggc ttgcacgttg aatggggcaa
     1621 cattcgcatt gccaaaaaag ccaaaggcga taaattagtg attgtcagcg atgctgttgc
     1681 tgccgcagga agtgatattg agtcgtttat ttttgtcggt aaaaaagtca cggtgaaaga
     1741 tggcaaatgc tacgatgaat tcggagcatt gggcggtgcg gcaatcacga tgatcgaatc
     1801 cattcgcaac gtagtgcaac attgcgatat tagcctgaat gaagcaatcc gaatgagtac
     1861 cctttacccg gcaaaagcga ttggggtaga ggaaacactc ggctcacttg aagccggcaa
     1921 aattgccaac cttgcgattt tcgataatca atttgaagta aaagcgactg ctgtaaacgg
     1981 gcaattacag tggcattaat tttgctacaa attctaagca taacagcata taatccaaag
     2041 gcaggcattg tgtctgcctt ttatttatag ggagaataac atgcaattta aagattactt
     2101 agccactttt ccaactattg atcatctagc cggcttaaac gtgataaata gcggtgaagt
     2161 gattcaacat attcctgcga ttgaaggtaa attaggttca ctaaaacttt acaatgcact
     2221 gtttgcgaaa tttgatggga aattaaccgc tagtgcagca aaacaagggt tggaatggtt
     2281 tgccgaacac gttgaagatg cgaaaaataa tgtgggtaag cacccgaata ttgatctatt
     2341 atttagggta attgagcaag atttatcttt aagtttagag ccgattgtta aataagattg
     2401 cactagtgaa aaataacaag cggtcattat ctgcaaaatt tttgcaaata atgactgctt
     2461 gtgtttaaga ggcttatttc acggtaatgc gtgcaaattt gcgtttgccg acttggtaaa
     2521 caaaagtgcc tttttgagca gtttgtttca catcttccac tttttcacca tcaattttaa
     2581 ccccgccttg ttgggctgag cgaattgcct ctgaagtgga cggtactaag ccggcttctt
     2641 tcagtagagc cgctaggccg atttcaccct caaaggtaaa ttcaggcact tcatcaggaa
     2701 ttgccccttt ttggaaacgg ttgacaaact cttgctctgc tgcatctgct gccgcttcat
     2761 cgtggaaacg agcgataatt tcttttgcca gtagaatttt cacatcacgc gggtttttgc
     2821 cattttcaac atccgctttt aattgtgcaa tttcgtctaa tggacggaat gagagcaggt
     2881 tgtaccaatc ccacattaaa tcgtctgaaa tcgacataat tttgccgaac atttcgcttg
     2941 gagcttcagt tacaccaatg tagttgccga gagatttcga catttttttc tcgccgtcta
     3001 agccgacaag tagtgggagt gtcattgcca cttgtggttt ttgaccggct gatttttgta
     3061 actcacgtcc aactaacaag ttaaaggttt ggtctgtacc acctaattcc acgtcagctt
     3121 tcagttctac cgagtcgtga ccttgtagta gcggataaat aaattcgtgg attgcgatcg
     3181 gttgttggtt cgtgaaacgg tttttgaaat cttcacgttc taacattcga gcaacggtgt
     3241 agttggaggc taagcggatc ataccttccg tacctaactt gcctaaccat tcggagttga
     3301 atacgatctt ggttttttgt ggatctaaaa ttttgaagat ctgctcttta taggtttcgg
     3361 cattgcgtaa cacgtcttca cggctaagtg gcggacgggt agagtttttt cctgatggat
     3421 cgcctaccat accggtgaaa tcaccgatta agaaatagac ttcgtgcccg aattgttgga
     3481 attgacgaag tttgttcagc acaacagtat gacctaagtg aatatccggt gcagttgggt
     3541 ctgcccctaa tttaatacgc aatgggcggt tttcttttaa tttggtgatt aaatcttctt
     3601 ctgaataaat attttccacg ccacgtttaa gttcggcaag gactgattcg atagcttgag
     3661 tcatttatct tccttttagt cttgaatata aaaaatggat ctattatagc ggtatgaatt
     3721 gaaattgata ggctataggc gaaaaaaaac gccgtatttt gtgggggaat acggcgtaaa
     3781 gagttggagt gattacctat tatttttgaa gtgatttaat gataatgatt atcatctgtt
     3841 aagtcaatac tttttttgaa aattttcaat aagaattatt ctcatcaatt aagtaagatg
     3901 gatactacgg caattagtga agaatgtaca gcggaatttt cgtattgtaa gagtgttggt
     3961 aagcggtatt tttagaaaaa acctccgaga gcggttattt ttcggaggtt ttttgcaaat
     4021 gaggatttac atcgttgaaa tgtatttcaa catcaccccc gctgcaatcg cagagccaat
     4081 cacgccggca acgtttgggc ccattgcgtg cattaacaag aagttttgtt tatcgtactc
     4141 ttgtccgact ttgtttgata cccgtgcagc catcggcacg gcagaaacac ccgctgagcc
     4201 gataagtggg ttgattttgt gctgactaaa gcggttcatt attttcgcca taatcacacc
     4261 gcttgcagtg ccgatcccaa aggcaatcac gcccaatact aaaatgccta gtgtttgcgg
     4321 ttgtaagaat ttgtctgcga ccaattttgc ccccaccgat aaccctaaga aaatcgtcac
     4381 gatattgatt aacgcatttt gggcggtgtc gtttaagcgt tctactacgc cactggttcg
     4441 cagtaagttg ccaaagcaga acattcccaa taacggtgca gcatccggca gtaagagtgc
     4501 cactaataat agcaacacga tagggaaaat aattttctca cggttgctta cattacggag
     4561 ctgaaccatt cggattttac gttcttgctc ggtggttaag gctttcataa tcggcggctg
     4621 aatcagtggc actaacgcca tataagaata agccgctacc gcaatcgcac ctaataattc
     4681 aggggcaagt ttgctggcaa gataaatcgc ggtcgggcca tctgccccgc cgataatccc
     4741 aatcgcagcg gcttgtggca atgtgaagtc gataatgcct aaccagttta gccctaatgc
     4801 acccagtacg gtagcaaaaa tcccaaattg agccgcagcc ccaagcatta acattcgagg
     4861 gttggcaagt aaagggccga aatcagtcat cgccccgaca cccataaaga taataagcgg
     4921 agcaacgccg tagccgatag caactttata gaataatgcc aacacaccgg cggtatagcc
     4981 catatcgcca gccattactt caagctcatt ttgaacagag ggagcagcca gtgcgatggc
     5041 atctttaatc gaatgcagat caaggcttgt actatttacc ttagcagcaa taattgccag
     5101 ttgctcggca gaaccgctgt ggagtaaatt gtctaatgcc gtcattgcca tacctgcttc
     5161 cggaatgttt gacatcaaac caccaaagcc aataggcagt agtaaaagcg gttcgaattt
     5221 tcgggcgatg gcaagccaaa gcaacactaa actgatgaca atcataatcg cttgccccag
     5281 ttctaaatgc attagcccca tacctttaaa aagtgcaata atactttcca taccggactc
     5341 ctaggcaata ctcattaaag tatcatttac cgccacaaca tcgccttgtt tgacattaat
     5401 gccttgaatc gtgccggatt ttgccgcaca aatttgggtt tccattttca ttgcttcaag
     5461 aatcagtaac acatcgcctt cagcaacttg ttgcccctct ttcacttcca ctttcaaaat
     5521 gttccctgcc attggagcat tcaccggttc ggcattggct gatagcgtat ttgcagattt
     5581 tggtgcagaa tcgaccgctt gcggagccgg tgttgctggt gttggagcga tattggttat
     5641 atcgccacct tcactcacct tcaccacaaa ggctttgcct tcaagctcaa cggtataaat
     5701 ggctgaaccg gattgtgttt gggcttttgg tgcagaagca gcggaggctt gtgccggttt
     5761 tgcttcatca gcacttggca ctggctcaaa ggcagacgga ttattgcggt tttccaaata
     5821 tttccagccc acttgttgga agagtgccac aatcaataca tcatcaatca tgttttcaga
     5881 tagcgtaatg cctttttctt ttgcacttgc agtcacttct gccactaatt tttccagttc
     5941 cggcggaaga tgatcggctg ggcggtcggt aatcggctct gctccctcaa gcactctgtc
     6001 ttgcaaggct ttgtttaccg gtgccggtgt gcgaccatat tcgcctttta aaatacctgc
     6061 agtttctttg gcgatagttt tataacgttc gcccattaat acgttcatca ccgcttgtgt
     6121 gccgacaatt tgtgaggttg gtgtcaccaa cggaatattg cctaaatctt cacgcacacg
     6181 aggaatttct tgtaaaacca agtctaattt atccgacgca ttttgttgct tgagttggct
     6241 ttcgaggttg gtcagcatgc cacccggcac ttgggcaacc aaaatacggc tatctatacc
     6301 acggagctgt ccttcaaatt ttgcatattt tttacgcacg ttacggaagt aggcagagat
     6361 tttctccaga gctggaatgc tcaagccggt ttcatacggc gtgccttgaa gtgtggcgac
     6421 aatagactcg gttgccgggt gaccgtaagt gccggacatt gatgaaatgg aggtatcgac
     6481 accatcgaca ccggcttcaa tcgctttgag caacgccatt tcagccatac cggtggttga
     6541 atggcaatgg agatgtagct caacgtcgta gcgtttttta atttcgctga ctaattcata
     6601 ggctgccatt ggggttaaaa tgcccgacat atctttgatc accaacgaat ccacgccaat
     6661 ttccaataat tgctcggtta catccaacca cgtttgtagg gtatgaacag ggctggtggt
     6721 gtaactcaaa gtaccttgtg cgtgcccgcc gtgttttttg accgcttgta atgcggcttg
     6781 catattgcga gggtcgttga gggcatcaaa tacacggaac acactcatac cgtttgccac
     6841 cgaacgctcg acaaatttat ctaccacatc gtcggcataa tgacgataac ccaataagtt
     6901 ttgcccacgt agcagcattt gcattggggt tttcggcatt gcttttttca gctcacgcaa
     6961 acgcacccac ggatcttcgc ctaaaaaacg aatacaactg tcaaaagttg ccccgcccca
     7021 agtttctaac gaccaatagc cgatattatc cagctcggag gcaatcggta acatatcgtc
     7081 taagcgtaaa cgagtcgcaa aaagggattg gtgtgcatca cgcaaaacca catcggtaat
     7141 cgcaattttt ttcggttgag ttgtcataat caaattcctt ctaattattt tatttttgaa
     7201 atcttgttaa tgttgcccgt taattcgacg atgatgagca atcgcagcgg caatcacagg
     7261 gcgtaaacgc tctaaatcat ctgggggaga ttgaggcaca gttttagagg ctggaataga
     7321 aacaggttcg gggaaatatt gattgataat cttggaaata aagctgatgg cataaattaa
     7381 aaccagcagg aacagcataa caaatcccat tccggctacc attaaattta taccttccgc
     7441 aaagagttct gcaggtgcca taatttatcc ttaaaatgta gaaatgatga agaaaatgta
     7501 gaaaaaattc agatttattt caaattattt agcctcaaaa tgagtggtag atcacaaact
     7561 ttaaacgcaa gcggtcagat tttacaaatt ttttacaaga gtagttaaaa tttgcaaaac
     7621 ctgaccttag gttagcttga agctaagtcg ttatgccatt agccccgaaa tatattttga
     7681 aagggtcatt gcacttagca ccgccattag aatcaccaca atcgcccctg aaacggtcat
     7741 ccacacaggg tgtttgtagt cgcccacaat cttggttttg tgagctgcca gcagaattaa
     7801 cccgagggaa atcggtagaa ttaagccgtt aagcgtccct acaaacacca agacttgtgc
     7861 cggtctgccg atggttgcca gcacggcggt tgaaaccaca ataaaggcga caatgaaaca
     7921 gtttttgtgt ttttcgataa atggcgagaa tgaagtaatg aaggaaaccg aggtataagc
     7981 cgccccaatc acagaggtaa tggaggctgc ccaaatcacc acgccgaaga tcatcaaacc
     8041 gacatcgccg gcaacgtggg caaatggggt agccgcaggg tttttcggat caagttgcac
     8101 gcccattgac accacgccca gcaccgctaa aaacagtacc acacgcataa ttgaggcgat
     8161 taaaatggct gacaccgagc ttttgctcac ctcttttaaa ttctctttgc ctttaatgcc
     8221 tgcatcaagc aaacggtgcg caccagcaaa ggtgatgtat ccaccaacag ttccgcccac
     8281 tagcgtgaca atcgcaatca cgtctaattt ttccggcaca aaggtatgca ccaccgcatc
     8341 gtcgattggc ggattggctt ttacggcaac gaagatggtt aaagcaatca tcacaaagcc
     8401 cataatttgt gcaaatctgt ccatcacttt accagcttca cggaacagga acacgcccac
     8461 ggcaatcgca ccgctgacca ccgcacccat ttcaggggaa agtccggtga gaatgtttag
     8521 ccctaaacct gcaccgccca cgttgccgat attaaaggct aaaccgccca tcacgataag
     8581 cagagccaga aagtaacctg cccccggcaa tacggcattg gcgatgtctt gagctttctt
     8641 ttccgatact gctacaattc gccaaatatt cagttgagca ccgatatcaa gcaagatcga
     8701 gagtaagatc acaaagccga agctggcaag tagggtttgg gtgaaggtgg ctgtttgggt
     8761 taagaacccc ggcccgatgg cggaggtcgc cattaaaaat gctgccccga gtagggcgct
     8821 acggttgttg tttgacattg tgttggttcc ttttttgttg ttaatgagtc attattcgtg
     8881 gatttatcat ggtaatattc ccctctttag caaagagggg ttaggggaga tttggcagta
     8941 gaactcatcg aagtgagaga gttaataatg ctcaatttaa cctcttgaaa ttacttattt
     9001 tctccgtaaa tcgcttctgt caaatctccc ccagcccctc ttttctaaag aggggagttc
     9061 gatctccaag agttttattt ctggttttcc gtccattttg actaaaacag gatcaggctt
     9121 tcaccaaaat cccctttgcc tgtaactctt ttttaattcg ctcggcaaat accacggcgt
     9181 gttcgctgtc accgtgtaag caaatgctgt cggctttaat cgccacatta ccaccatcaa
     9241 cggttggtac agtgccgtct aacaccattt gcaagacttg gctgatcgct tcatcatcgc
     9301 tttctaccat tgcatcatca cgggtgcgag gcacgagcga gccgtcagct aaatagtggc
     9361 ggtcggcaaa gacttcggaa atggtttcca aaccgtgctg ctcggcaatg ctcaacatca
     9421 ggctgccgga taagcccatc agtttgaggt tgggatcgaa ctgtttgacc gtattggcga
     9481 taagggtggc aaggtgaggg tctttggcgg ccatattgta taaagcgccg tgcggtttaa
     9541 cgtagctcat cggcatattt tccgcatcac ataaggcttt ggcggctccc agttggtaga
     9601 gcagacaggc tttaagttca tcatcgggca gttgcatatt ggtacgccca aagttttccc
     9661 tatctggaaa actcgggtga gcgccaactc gcacgctgtt ttccttcgcc cagttaatcg
     9721 ctttacgcat ttcattgtaa tcaccggcgt gcaagccaca gcagacattc gccgaagtaa
     9781 cgagctgtaa taatgaatga tcgttgccac aaccttcggc aagatcgaca tttaaatcaa
     9841 cgtgattcat tcgcttttct ccgaattgtt tccaaataat tttgatcttt ttgataaatt
     9901 tcgaccgctt gttcacggct tacttgctca aattgcaccg ttgagccgaa cggattttgt
     9961 gccaaccgcc cgagatcggc ctgaataatg caggcaattt tcggataacc accggtggtt
    10021 tgggcatctg ccatcagcac aatcggctgg ccgtccggcg gcacttgcac cgtaccactc
    10081 ggggctgagt aggagagcat ttcaagggaa gcggtcaatt ccaacgcttt ttctgcaaaa
    10141 cggtagccca tacggttgct gttgttttgc agttgccacc cttgttgcca aaagcgttca
    10201 cggctatctg cggtaaaggc ttcatattcg ctcgaagcgg ttgcccgaat gtgtgaggtg
    10261 aaatcaatcg gctcaatcga catcaaagaa agtcggctgt ctctgcggcc tgtggcgatg
    10321 ttatcgccgg cttttaacat tctgccttga aaaccgccaa attgagcttt gagatcggta
    10381 cttgccgaac ctaacacctg cggcaccaga aaaccgcctg ccacgcataa ataggcgtaa
    10441 ttgccgagaa caatccgttt tatcgtcagc gtttgacggg cgttggcagt gtagcggtaa
    10501 taggaaaaaa ccggcgtgcc gtccagctcc gcctccacca atgcaccggt gaggcaaaat
    10561 ggcgtgtcgc aatcaaaggt aatccgcatt ccgccaaggg taagttcaat cgcaggtgca
    10621 ttatttgcat tttttaacaa taaattaccc gcttgtaagg caaggctgtc catcgcaccg
    10681 ccgtggctca cgcctaaatg gcgataacca taacgcccta aatcttgaat gtgggcaaaa
    10741 ccctgtattt tttcgatata aatcatagcg ttatactctc cgccacaaat ctaacattat
    10801 cgccggctgt aagtagcgtt ggcggattgt gttgaatatc aaacaacggt aactcggttc
    10861 gtcctaacag ttgccagcca cctggtgagg taaagggata aatgcctgtt tgactaccgc
    10921 cgatgccgac cgaaccggca gggactttgg tgcgaggcac gtttcggcgt ggggtgtgta
    10981 aattttgcgg taagccgttg aggtaaggaa agccgggttg aaagccgatc ataaacacgg
    11041 tgtaagtcgg ttcggtatga cggcggataa tctcttcggg agtggtattg tggaattggg
    11101 cgacttcaaa cagatcttcg ccaaattcac cgccgtaatg gacagggatt tcaatcaggc
    11161 gtggggattg tgcggcttgg gcttggtcgt tttcccagag ttgttgaacc gcttggataa
    11221 ggcgtgtgct atcggtgcca atggcgtgaa atagggtaaa attgttcatt cctaccacca
    11281 cttccaacac gccatctaag gctcttgcct gttctgccac ccgccaaatc tgttgctgtt
    11341 tggcaagctc tgcaggcggt tcggctaagc agagcaggga atgttcgctg gtatgatgaa
    11401 tcgtcagcat aattgccctc aaattgttac aaaaaggtaa caacttttta cgctgatata
    11461 tccagactgt caattttatt ttgttgaaaa tgtgaaatag ctcttaattt tcagaaattt
    11521 gatcatttct tattcgccaa aacgttgcaa atctgggctt gcctgattct gtgacacctc
    11581 gatatttata ggtaatgatt gagccaatcg gtggcggatt ttctcgttct ttatctttaa
    11641 aaccgctgcc aatccgaaaa cgtccacgtt gattttcaca agtgattgcc ccgagtttat
    11701 cggtatattt ccctttgcct ttatgatggg caaccacagt gcattcctca tctaaaaccg
    11761 gtttgatttt caaaatttgg gcagaacgac cttgaatata gcctgcattc gggttgcgaa
    11821 cgataacccc ttcgccacct tgttccagca cagattggta aaattgttga aggtgggctt
    11881 tatctttaat cggaatttgc tcaataatag cgatatggag cgttggatgt tgcttcagat
    11941 aattctctaa ggtcgccagc cgttcaatca aattcccttg tgcatttggc acatcgaaca
    12001 cctgtaattt cagcttgtgc caacctttgg gctgagcgga acgcacaatg cttgaaattt
    12061 cctcaaattt gccccgttcg ctaaacagtt cgccgtcaat cgcaaaagga gggaaatctt
    12121 gaataaaata gtcgggtgga ttgagcggat aaccttggcg gctgatgagc tgttgaccgt
    12181 cccaaaaacc tcgcacgcca tcgagttttt ctgacattac ccagccactg atgtcttgat
    12241 cttgatattg cccaacgagc attaactcgg gcgatttggc aaaaataggg ttaccaatga
    12301 agagtaggaa taagagcagt tttttcatag tctctccgaa atagtgcctc cgaatatgca
    12361 aggcactata aaggaaagcg tgcaaacagt cagaaatgaa tctcaatttt tcgacgcaga
    12421 tcgcaaaatt ttccgaaaaa ctgatcgctt gagtgagaaa tttaacgtac tgtttgaatt
    12481 aaagcagaaa tatcctcgct aaaggtttcc aacttcgcca tttcttcaat ttggctatga
    12541 gaatatttct tcacattgta aacgaccacc atacttacat cacctacttg caataaatta
    12601 ctttcgccaa aaggcgtgta gcgtgttgcc ccaatgctga taatcgcttt agttgggtag
    12661 tttgcctgtt ttaacatttc ggaaatgttg ttcatcggac cttcatcggg ctgattattc
    12721 attctctcta caatccaatc gagcaatttt tgatggaaat agctgtactc caccgcaggg
    12781 ctgtcgatgc cgtaggtatt cagctcgcca ttacgtttat ggaaacaagc gatgttgtaa
    12841 ttatccagcg tgccgccttt gttgaagtta tctaatggaa gatgaattgc cgaaagccct
    12901 ttagacgaag ccccccagtt tttcttttca cagattttat tcgcattcgg acggcggata
    12961 gagcagtcat tgtaagccgc aaaatgggtt ggcgtgagcg aaaccacttg ctgatcttgg
    13021 tagccaattt cacaaattaa cgccacttca ggctcaattt gcagattatc agcatcactc
    13081 gggaaattaa tcgcagtatt tgaaagcgga taggtggata aaaactgata atcccccaaa
    13141 ttttccgccg gcacataaaa cgggaaaatc gcctttggct gcactgcttc cactttcgca
    13201 aaatccgccg cctctccggc ttgttctaaa tgtccagcaa aattgccggc cacgcctaaa
    13261 ccgataaagt gttccataat ctactcctta attggtaaaa gttggataaa attttaccgc
    13321 ttgtaaccaa aaattgcgaa tgtttatttt gatctgattg acagaaaatt attgaattga
    13381 gattaaattt agccatattt tgaacataaa attagcgctt tgttataaaa acaagcaagc
    13441 ggtcattttt tttcaaattt tttacaaaaa ccgcttgcgt t
//
LOCUS       DANLUT010000056        13093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLUT010000056 DANLUT010000000
VERSION     DANLUT010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            55..960
                     /locus_tag="PXB38_001253"
     CDS             55..960
                     /locus_tag="PXB38_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5353580.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQGAKDISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEIGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVDGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKGDN"
     gene            960..2201
                     /locus_tag="PXB38_001254"
     CDS             960..2201
                     /locus_tag="PXB38_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5353581.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQKLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            2198..2830
                     /locus_tag="PXB38_001255"
     CDS             2198..2830
                     /locus_tag="PXB38_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL5353582.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNLACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETAKLHFILQGQKVRYLTDDEVNDLKNRGK"
     gene            2832..3608
                     /locus_tag="PXB38_001256"
     CDS             2832..3608
                     /locus_tag="PXB38_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL5353583.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCKNV
                     HVMAAVVPEGEDREAYKQTFIENVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            3661..5019
                     /locus_tag="PXB38_001257"
     CDS             3661..5019
                     /locus_tag="PXB38_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL5353584.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMNKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLIPIIFSVARRLGGNILVYSLPIGLSMLLVHVLLPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNYFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEMLDSALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLAFILSALLRAAQGSATVATITTTTILAPAAAAAGYTELQLALL
                     TCAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            5081..6421
                     /locus_tag="PXB38_001258"
     CDS             5081..6421
                     /locus_tag="PXB38_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL5353585.1"
                     /translation="MLKKSLLCMLLISSALYAEDRVQENQLTNITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKAEWTQTAEPDKIKTPYLDDFVAKQVSLDKPENKLNYRFYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYHSPEVIGWLLQQKRH"
     gene            6433..7122
                     /locus_tag="PXB38_001259"
     CDS             6433..7122
                     /locus_tag="PXB38_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL5353586.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            7279..9096
                     /locus_tag="PXB38_001260"
     CDS             7279..9096
                     /locus_tag="PXB38_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL5353587.1"
                     /translation="MIIKDTHWTSQQTSPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            9099..9716
                     /locus_tag="PXB38_001261"
     CDS             9099..9716
                     /locus_tag="PXB38_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5353588.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(9800..10411)
                     /locus_tag="PXB38_001262"
     CDS             complement(9800..10411)
                     /locus_tag="PXB38_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL5353589.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            10606..11514
                     /gene="glyQ"
                     /locus_tag="PXB38_001263"
     CDS             10606..11514
                     /gene="glyQ"
                     /locus_tag="PXB38_001263"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL5353590.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            11594..11854
                     /locus_tag="PXB38_001264"
     CDS             11594..11854
                     /locus_tag="PXB38_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353591.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            11897..12931
                     /locus_tag="PXB38_001265"
     CDS             11897..12931
                     /locus_tag="PXB38_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5353592.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKVVLEQRLHLAV
                     ERAKERFLLK"
BASE COUNT         3874 a         2589 c         2973 g         3657 t
ORIGIN      
        1 ctattggtta atataccgcc atcaagttca ttaatttatt tgagggaata aacaatgagt
       61 caaaaatata gcgtagccgt catcggctta ggagcaatgg gtatgggagc agcaaaatct
      121 tgtatcgctg ccggattaga cacatacggt gtggatctta acccgaatta tctggaaacc
      181 ttaaaagcag caggtgctaa gaaagtcggc acaagtgcgg tcgattttgc cgctgaatta
      241 gatgcggtgt tgttattggt ggttaatgcc aaccaagtga atgctgtgtt attcggtgaa
      301 aacggcttag cccaacattt gaaacaaggc acggtggtga tggtgtcttc caccatttct
      361 gcacaaggtg caaaagatat ttcacagaaa ttaacagatt taggcttggt gatgttagat
      421 gctccggttt ccggtggggc agcaaaagcg gcacaaggtg aaatgaccgt aatggcatca
      481 ggctcaagtg aagcgtttga gaaactaaaa cctgttttag atgctgttgc aggaaaagtt
      541 tataacatcg gcgaagagat cggcttaggt gcaacggtga aaattatcca ccaattatta
      601 gctggtgtgc atattgccgc aggtgcagaa gcgatggcat tagccgctcg tgccggcatt
      661 ccgttagatc tgatgtacga tgtggtaact aatgcagcag gtaactcttg gatgtttgaa
      721 aaccgtatga aacacgttgt tgatggcgac tacaccccgc tttcaatggt agatattttc
      781 gtcaaagatt taggcttagt gaatgacaca gcgaaatcat tacgcttccc acttcattta
      841 gcaagcacag cgtactcaat gtttactgaa gcaagcaatg caggttacgg caaagaagat
      901 gatagtgcgg tcatcaaaat tttcagcggt attgagctac caaaaaaggg agacaactaa
      961 tgttaggcat tattgcagat gattttactg gtgcgagcga tattgccagc ttcttaaccg
     1021 aaaacgggct aaaaacggtg caaatgaatg gtgtgccgaa aactacactt aacagtcaag
     1081 ttgatgcgat tgtgattagc ctgaaatctc gctctaaccc tgtggaagaa gcaatccaac
     1141 aatcattaca agccttagat tggctgaaac aaaatggttg ctcgcaattc tactttaaat
     1201 attgttccac ttttgacagc acggagaaag gcaatatcgg gccggtaacc gatgccctaa
     1261 tggcggcatt agataccgat tttaccgtag tcacaccggc tctgcctgtc aatggcagaa
     1321 ccattttcaa cggctatttg tttgtgggcg atgtgctact gaatgaatct ggtatgcgta
     1381 accacccgat taccccgatg aaagatgcca acttggtgcg tttaatggat gcacaatctc
     1441 aaggcaaaac cggcttggtt gcctatgctg atgtgattca aggggcagag cgtgtgaaag
     1501 cccgttttgc tgaattgaaa cagcaaggct acaaatatgc ggtagtagat gctgccgata
     1561 attcacaact tgcggtgctt gccgaagcgg ttgccgattt tcaattagtc acaggcggtt
     1621 caggcttagg ggcttatatg gcggcttacc gttcaggcgg caaaaaaggc acgaatgcgt
     1681 ttgtaccaag caaaggcaaa accgttgtgc tttcgggttc ttgctcggta atgaccaata
     1741 cccaagtggc ggcttaccag caaaaagccc caagttattt cttagaagcg gaaaaagcca
     1801 ttcaggatcc gaactatgta gaaacgcttt atcaatgggt gattgcaaac ctagacggtg
     1861 actttgcccc aatggtttat gccaccgttc cccctgaaaa attgaaagag attcaaaccc
     1921 aattcggcgg cgataaagcc agccacgcca ttgaaaatac ctttgccaaa ttagccgaaa
     1981 aattacaagc cgcaggcgta actaacttta ttaccgcagg cggtgaaact tcgagtattg
     2041 tggttcagaa acttggattc agcggtttcc acatcggcaa acaaattgca ccgggcgtgc
     2101 cgtggttaca agcggtcgaa aaaccgattt ttcttgcatt gaaatcgggt aacttcggta
     2161 aagaagattt cttcagtttt gctcaggaga tgtttgtatg acagaacaag aacaaaagat
     2221 tgaaatggtc aatcttgccc gctcgctgtt tgagcggggt tataccgttg gcggagcggg
     2281 caacctctct gtgcgtttag atgaaaatcg cattttagtt accccaaccg gctcatcgct
     2341 cgggcgttta gaggcagacc gcctttccgt attggatatg cagggtaatg ttctttcagg
     2401 agataagcct tcaaaagaat cagtattcca cttagcgatg tatcagaaaa acctggcttg
     2461 ccaagcgatt gtgcatctac attccactta tttaaccgca ctttcttgct tggagaattt
     2521 ggataccgac aacgctatgc gtgctttcac cccttactat gtgatgcggg tgggaaaatt
     2581 gccggtcatt ccttactacc gcccaggcga catcaacatt gcccgagagt tgggggaacg
     2641 agccttggac ggtaaagcct ttttactggc aaatcacggg gttgtagtta caggttcaga
     2701 cctgcgtgat gcggtggata ataccgaaga gttggaagaa accgccaaac tccattttat
     2761 tctacaaggt caaaaagtcc gttatctcac cgatgacgaa gtcaatgatc tgaaaaacag
     2821 aggaaaataa aatgcctaaa tttgcagcaa acctgacgat gatgtttaac gaagtgccgt
     2881 ttttagatcg ttttgaagcg gctgccaacg ctggatttaa atatgtagag tatttatggc
     2941 cttacgatta tccggcagca gaactgaaag ccaaacttga gcaatatggc ttaaaacagg
     3001 tgttattcaa taccgcagcc ggcgatgttg ctcaagggga atggggcgtt tccgccattc
     3061 cggggcgtga agccgatagc catcgtgaca ttgatttggc gttggaatac gccctcgcat
     3121 taggttgtaa aaatgtgcac gtgatggcag cggtcgtgcc agaaggcgaa gatcgtgaag
     3181 cctataaaca aacctttatc gaaaacgtgc aatatgccgc cgataaattc aaaccgcacg
     3241 gcattaacgt tttgcttgaa gccctaagcc cggaagtgaa accgaattat ctgcttaaaa
     3301 gccagtttga tacgctagaa attgtggaag cggtaaaccg agacaatgtg tttgtacagc
     3361 ttgactactt ccacgcacag aatgtggacg gcaacttatc tcgcctaacc gacaaactca
     3421 agggtaaatt tgcccacatt caaattgcct ctgtgccaga tcgccacgaa ccggacgaag
     3481 gggaaattaa ctaccaatat atcttcaaca aactcgatga aatcgggtat gaaggctatg
     3541 taggttgcga gtataaacca cgagcggaaa ccacctcagg actaggttgg tttgagcagt
     3601 ataaataacc acgatgatta gcggataaat acgtgaatac aacatttaga aggaaacttt
     3661 atgtcaaatg aaatgttaat tttgattgga ttagcaagcg tagttgctct tctggtcatt
     3721 atgattaaag gtaaagtaca cccattctta gcattgggat tagtaagtat cgcagttgcc
     3781 ttaactgcag gtattccaat gaataaagta atcccaacct tgatttcagg gatggggagt
     3841 actctaggaa gtgttgctct gatcgttggt ttaggagcaa tgttagggaa aattatcgaa
     3901 aaatctcacg gtgcggacgt attagcaaat tggttgttac agcgttttgg tgagaaaaat
     3961 gctccctttg cattgggtat gactggcttt atcttcggga taccggtttt cgttgatgtt
     4021 ggttttatcg tattgatccc gattattttt agtgtggcga gacgtttagg tggaaatatt
     4081 ttggtttact cactacctat cgggctttct atgttattgg ttcacgtttt gcttccgcct
     4141 cacccgggaa ttgtggcggg tgcacagaac ttaaacgctg atattggctt tgtattggga
     4201 attggtttag ttgcagcact gccggcatat ttaatcggtc agaagtttat tccattcttt
     4261 acgaaaaatt actttgtaaa agtagtgact tcaaccgatc ttttacagca ccaaaaagat
     4321 ttgattaaag agaaagggat tgaattacct tctttcggta aagtattggc aatgatttct
     4381 ttccctttga tcctgattat gttaggtacg gtaacggcaa caaccttgcc gaaagaacat
     4441 atcgtgcgtg aagtgttcag tatggtagga agctctccgt ttgccttatt tgtggctgtt
     4501 tgtctttctg cttatgtact aggctttaga tacggttgga ctaagcataa attagaagaa
     4561 atgctggatt ctgcgttagc accgattgcc gggattattt taatcactgg tgccggcggt
     4621 atgttcggta aagtgttaga tgccagtggc gtaggtaaag cattggcaga tgtattagcc
     4681 aacacaggtt taccattact ggttctggct ttcattctgt ctgctttact gcgtgccgca
     4741 caaggctcgg caacagttgc aaccattact actacaacga ttttagctcc ggcagccgca
     4801 gcagcggggt acactgaatt acagcttgca ttgctcactt gtgctatcgg agctggttca
     4861 atgaccttat cccacgttaa tgattcactc ttctgggtat ggacgaagtt cttcaatgtt
     4921 cccgtatcgg taggcttaag aacttggacg tttttaacca ctattttcgg tgtaatcgcc
     4981 tttgctgttg ttggcattat ttggatgtta ttcgtttaat atcactctgt tactgcttaa
     5041 aatccgcctc ttatgaggtg gattttttta ggagaaacct atgctgaaaa aatcgctttt
     5101 atgtatgcta ttaatctctt ccgcccttta tgcggaggat agagttcaag aaaatcaatt
     5161 aaccaatatc acgctgcttg ccgaaatcac cgctcaaggt caaaaaatta acggcgtggc
     5221 attggaatat cctgataatg tattatcggg tagcgatctt cgccaactgt atcaggtcaa
     5281 aacggcatta gatagtgcgg agaaagaaaa ccgttcggta ctcaaagcct atgtcaataa
     5341 tgagccaaaa gtgaccgcac ttccgcaagc cggtaaattt gtaattattg aattggatac
     5401 ggcagataaa aatgcggcaa cttatagcgt aaaagatgcc aataaagcac cgatgaagtt
     5461 taaatccaaa gatgaaaacg gcaacattgt cgaaaccgag aaagtacaag cggtcaaaat
     5521 tcccgaattt tttgcaaatc gcctaatcta ttcggtggaa caaaaaggct tgcttaaatt
     5581 aaccagcggc acaactctag gcaaggctga atggacacaa accgctgaac ccgacaaaat
     5641 caaaacccct tatctcgatg attttgtcgc aaaacaagtg agcttagaca aacctgaaaa
     5701 taagctgaac taccgcttct attcgccttt gcaaaaaaat ggtgaaaaat acccgcttgt
     5761 gattttccta cacggctcag ggcaagtcgg atcggataat ttggctcacc tgctttccag
     5821 taaaggggcg attgctaccc tgccttatgc cccaagtttt gtgcttgctc ctcaatacga
     5881 ccaagtgttt gacccatttg ataatgccgc caaggggcaa aaaggcggta ttcactggca
     5941 aacggaaaat cgtatcaatc tcgtgttaaa aatgattgat gaaaccctca aagccaatcc
     6001 tcaaattgat accacacgca tttatatcaa tggtttatct cgaggtgcag aagggggctt
     6061 aaatctgttg ttggctcgcc cgaatttctt tgccggagca ttattaatga gcggtcgtga
     6121 agcctacacc aacgaatggg tggacggcaa tgccaccaaa acgaatttgg cggcaattaa
     6181 acatataccg atttggtttt tccatagtaa agaggacaaa gtctcgccgg taaaaggttc
     6241 tcgcattaac taccgcattc tcaaagatga gttaaatgcc cccaatgtga aatataccga
     6301 attcactttt gaacaagccg gcgacaacgg cattgtcaat aataaccctc ataatacttg
     6361 ggacgctgtg tatcacagcc ctgaggtgat tgggtggtta cttcagcaaa aacgccacta
     6421 aggaggctca ctatgtttat gtatttgtct cacccgttag atcctaaaga tttagcttgg
     6481 ccgggagaac ctgttgttga ggtgactcgc tgcacagacg taggtgaaga aacgccattt
     6541 agcagtttta tcacgaaact accgaatcat tgcggcacac atatggacgc tcctcgccac
     6601 tttgtgaaag acggtttaag tatcaatgaa ttgccgatag agtatttctg ccataaagag
     6661 gtcgctttaa ttgaaattcc caaaggagag gcagaaggga tcaccaaaga agatttattg
     6721 ccttatgtcg atattctctc caaggtgtct tttgcctttt tacgaacggg gtttgagaaa
     6781 tatagaaccg agaaccctgc tatttatcaa aatgaatgcc cctatatttc aaccggtgcc
     6841 gggcagtatt tatctgatac tttcccgaat ttgaaaggag taggcattga tttcttggca
     6901 ctagggtctc cttcttcccg agtgcctgat gcggaaaacc ctaaaaattg ccatcgagcg
     6961 attttaggct actataccgg caggtttacc actgtgattg aagatatgca cttagcggaa
     7021 ctccctaaaa atgccaacat taagcagttt tttaatgcac cgtggcgaat taaagggtta
     7081 gattccagtc aagtgacttg tattgtggaa ttacagcaat aaaccatagc tatattcatt
     7141 ttaggagagg ctatttacta tagtaagcat aactcaatca ttaattgaaa ataattatta
     7201 tttgatttta atcaagtcat tcataactta attttgttat aaatatgacc ttgtttatag
     7261 cactattttg tttcgataat gattataaaa gatacacact ggacatctca acaaacctct
     7321 ccaaatgctt tcccagaacg acaagcactt atgcctattt ggggtgggaa aaatattgaa
     7381 cgcaatcaat ggcaatcttt atggctggaa caagcaccaa atgcgttatt acaggatggt
     7441 ttagcttatt tccatattcc gttttgtgct agtcattgta ttttttgtgg tttttatcgc
     7501 aatgcttgga aggaaaatta tagccagatt tatactgatc gtgtgattag tgaacttcga
     7561 tatgaatctt cactatggcg aggacaaggt aagattcatg ccgtttattt tggtggagga
     7621 acgccaacag cgttacatac agaagattta gtacgattga ttcgagcttg ttatcgttat
     7681 ttgccactcg ctgaagactg tgaatttact attgagggta gaattagcca ttttgatata
     7741 gataaggcta aggcttgtat tgaagcaggc gtgaaccgta tttctattgg tattcagact
     7801 tttaactccg aaattcgcaa acgtttaggg cgcaaacata gtggcgaaga ggctcaaact
     7861 tatttaaaag ccttatcgga attaaatgct gtgattgttg ctgatttaat ttttggcttg
     7921 ccaaaccaaa cagatgatat ctggcaaaac gatattgaaa ttgcgactag tttaccgatc
     7981 tcaggcttag atatttacgc ctttaataat tatcctttcc tgcctattaa tcgcttaatt
     8041 gaacatggaa aattacctgc gcccgcaggg tttgacaccc aaagcttaca ctatgcttat
     8101 gcagtagaga agttaaaagc acaaggttgg cagcaagtga gcaataacca ctttgctttt
     8161 ccaaatcgag gtgaacgcaa tcgctataat actttggtta aatcgaatat gccttgtttg
     8221 gcatttggtt ccggtgcggg gggaaatttt ggtgggctga gttaccaagt acaatctgat
     8281 ttaaagacct acttagattc gcctcttgat cagaaaagcc tttctttttt gagtaaacat
     8341 ggtgaacata aagcactgct tggtgtgata caacatagca tggaattggg ttacttagat
     8401 acaacgcctt ttgaacaaaa tgcgaaagct gaaaaattat tgcaacaatg ggaagcgctt
     8461 gatttactga agcgtgaaaa aaatcaagta tatctcaata ccagtggtcg ttactggtca
     8521 ccaacattaa ttcgtaaact aatgttaaca cttcctcaat caagtaagga taacaacatg
     8581 ataacgccat taactaaaga attagaaaat aaattgcgga caaatttaaa agaaaaccca
     8641 gggcaaattt tagaaatgct ggcaggaatg aatcaatgta gcttggaatc ggtaattaac
     8701 tgtctgccca aagaaatggt aatgcaaaca ggtggtgagc gttttgtgga aattatgcag
     8761 gcaattgctg gttggaatga agctgtgact tttattattc atacgcctga tgcgattgca
     8821 gaggtaactg ctaaattgcc acaaggtaaa attgggcgag gcttttataa ttttgaacat
     8881 ggtgtagatg gaggaattca cggtcattta cgctatgaaa attgtgctgc tatttactta
     8941 cttgatcgcc catttatggg aaaaagaacg gtggcgttaa cttttatcaa tcaaagcggt
     9001 gaggcgatgt ttaagatttt tgttgggcgt gatgaacaag gtcaattacg agaaaatcag
     9061 attcaagcca tgcggaaatt aattggagga tgctagtcat gattttggtt tgtggggcaa
     9121 atgggttgtt aggacgagca atctgtgaca aattacctag agagaaaacg atagccgtct
     9181 tacgaaaaga tgctatggat acgtttttca gcgaacgaaa tatagcagta gaaatagcag
     9241 atttattaga tttggaatcc tgcaacgcct tgttacaaaa aacacaaccg gaaatcttga
     9301 ttacggtagt aggaggaaaa aatgaacaag gtattcgtag cgacaaaaca gcaaatatta
     9361 atttgataaa agcagttgaa aaatattcac caactacgaa agtagtttta gttactagtg
     9421 ttgggtgtgc agaacaatgg gatttaatta gcccattagc acagcaagct ttaggtgaag
     9481 cactaaaagc caagacggaa gctgaagctt atttacagca aacagcatta aattggctga
     9541 ttattcgacc cggtgggtta aataatgatg aagtaaatga tgagtatcag attgtgcgtg
     9601 atttacctaa tgaacggaaa atgtatgtaa gccgtaaatc tgtcgcaaca ggcatagtgc
     9661 gtttactgga tagtacggaa aatcatcaaa tcttctctat tattaatagg ggatagtata
     9721 tttcaacgaa ggcaagcggg catattttat ggttattttg caactataaa acagaccgct
     9781 tgtgagatct ttttctattt tattgagaac tggatgccgc attcatctgc aagtagcgaa
     9841 gcaccttttt ctgggtagct tcgtccatat cggtaaaacc gaccattccg ttaaatactg
     9901 caatccattc gtttgcatca tgcattttag gatcacgttg tttatggcac acgctgcatt
     9961 ctgttttata ggtatttttg gtgttcgccc aaaagttagt gagatcttgg gtaaattcgg
    10021 cattttccac ccacacgttc attttcactt tttgccatac caagccggtg ttcggatctt
    10081 ccttgctctc tacaatctct aacagtgggt tgttgctgat aaaagatttc tcaaataccg
    10141 catcggtaat atttttactg aaagaatgat accaaatccg cccgaaacct ttgctttttc
    10201 gccataaatt cagctcaatt tcagcggctt ttgcggttgt ttgcaccaat ttaatttctg
    10261 ctccggcttc tagctgcccg attttctgtg tcaaattttc atcggcaaat aaagggattg
    10321 tttccgtggt gtaactgttt gaaccggcaa aacaaaatgt tggcatgatg aatgccaaga
    10381 aacagaaagc gattttcgat aatgatttca tcataaaccc cacaaattag atgagaaatt
    10441 aggttatatg ttacacaaat tgagcaaaaa agcgttgatt tacatcataa aactgatttt
    10501 atgtcgattt cttaattttt tgcaaaaaaa tcccaaaaaa tgaccgctta caagctataa
    10561 taaccagtat ttttcgacca tttttcaaat tcaagagaaa ataaaatgag tacaaaattc
    10621 aacgtaaaaa cctttcaagg aatgatttta gccctgcaag actactgggc aagcaaaggt
    10681 tgcaccattg tgcagccgtt cgatttagaa gtgggggcag gcacctcgca cccaatgacc
    10741 tgcctgcgtg cgcttggccc tgagccaatg gcgtttgcct atgtgcaacc atctcgccgc
    10801 ccgacagacg gtcgctacgg cgaaaatccg aaccgtttac agcactacta ccagttccaa
    10861 gtggtgatta aaccttcgcc ggataacatt caagaacttt acctcgacag cctgaaaatg
    10921 ctcggtttcg acccaaccca aaacgacatt cgttttgtgg aagacaactg ggaaaaccca
    10981 acgcttgggg cgtggggctt aggttgggaa gtgtggctga acggaatgga agtgacccaa
    11041 ttcacctact tccagcaagt cggcggcttg gaatgtaaac cggtgacagg cgaaatcacc
    11101 tacggcttag agcgtttggc gatgtacatt caaggcgtgg acagcgtgta cgacctcgtg
    11161 tggtctgacg gcgaactcgg taaaaccacc tacggcgacg tattccacca aaacgaagtg
    11221 gagcaatcca cctacaactt tgaatacgct gatgtggact tcctgttcca atgcttcgag
    11281 cagtacgaaa aagaagccca atacctgtta ggcctagaaa aaccattgcc attgccggca
    11341 tacgaacgca ttttaaaagc cgctcacagc tttaacttat tagatgctcg taaagcgatc
    11401 tcggtaactg aacgccaacg ctacattcta cgcattcgtg ccttaaccaa aggcgttgct
    11461 gaagcgtact atgccagccg tgaagcgttg gggttcccgg ggtgtaaaaa ataatcgtag
    11521 ggacgccatg cttggcgtcc gtcaataaat tacaaaacgg acacgaagca tcgtgtccct
    11581 acaaggattt acgatgaaac cgattttata cttcgccgat tggtgtccgg ataccgcccc
    11641 atttgtggca gaactagacc gcttgggcat tgaatatgag ccgtgcgaca tcaccaaagg
    11701 aggctcaaca cttaaaccat ttttgaaact gcgagacacg cattctgcct ttgaccacgc
    11761 caaagccaac ggctatattg gcattccggc attgctgatc gaaggcgaaa aagtcgtgct
    11821 ggatttggct gaattagagg gtattttcgg ctaacaagcg gttgaatttg gcggaaatgt
    11881 tgcaaaggag ccaataatga agacagtaat agcagataat tcggctgaat ttgtgaatga
    11941 aatttcacaa cttattcaat cgagtaagca acgaatgacc gttgcggtta atgcagaatt
    12001 aaccttgctt tattggcata tcggaaaacg gatcaatgac tatattttgc agggtgaacg
    12061 tgcggaatat gggcaagaag tggtgaaaaa tcttgctcaa agtctgacgg agcaatttgg
    12121 taaaggttgg agtaaacgcc atttaaatta tacaatgcaa tttgctacaa ctttccctaa
    12181 tttggaaatt gtgcacgcac tgcgtgcaca attaagctgg acacatttta agcagattat
    12241 tcatattgat gatccaacaa agcgagggtt ctatgcaaca atggctgcac aggagcgttg
    12301 gagtacaagg acattagaag atcgcattgg ctcattattg tttgaacgca cggcaatttc
    12361 caaaaagccc gatgaaacca ttatcgctga attgagtttg ctacgtgaaa aaggcgaata
    12421 taatcagtca atggtgttga aagatcccta tattttggat tttctcgacc ttaacgaccg
    12481 ttatatggaa cgtgatctcg aagatgcgat tctacgagag atcgaacagt ttttactgga
    12541 acttggggcg ggttttacct ttgtcgcccg ccaaaaaagg attcagattg ataatgatga
    12601 tttctatatc gatctgctgt tttataaccg taaactcaaa cgcctgattg cgattgaact
    12661 aaaaaccgaa agcttcaaac attcccacaa aagtcaaatg gaactctatt tggcgtggct
    12721 ggcgaaatac gagcaagaag cagacgaaaa cccaccgctt ggaatgattc tctgcaccgg
    12781 taaaaagcag gagcaagtgg aattgttgga tttgaaaaat tccgatattc atattgcgga
    12841 atatatgacc gtgttgccga gtaaagtggt attggaacaa cggttgcatt tggcggtgga
    12901 aagggcgaaa gagcggtttt tactaaaata gcaagcggtt aaaatcagcg gaaatgttgc
    12961 aaaatgaaag tgtgatggaa acgatttggt tgcatattcc gttggtgggt ggttagagat
    13021 tttcaaatct cccccctccc cctctttggc taaagagggg gcgatcattt agtgagtaat
    13081 tttaattcat ctg
//
LOCUS       DANLUT010000057        13055 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLUT010000057 DANLUT010000000
VERSION     DANLUT010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13055
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(388..1428)
                     /locus_tag="PXB38_001266"
     CDS             complement(388..1428)
                     /locus_tag="PXB38_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5353593.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMTENSA
                     KQGDVDNIREQLRKSKGVGNFKNLFVHSPGGNKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
     gene            complement(1437..3239)
                     /locus_tag="PXB38_001267"
     CDS             complement(1437..3239)
                     /locus_tag="PXB38_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL5353594.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMIQ
                     RCLVDSMEIWKDYVFTDGYMRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAEQAAEIIAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            3389..4216
                     /locus_tag="PXB38_001268"
     CDS             3389..4216
                     /locus_tag="PXB38_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL5353595.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            4230..5258
                     /locus_tag="PXB38_001269"
     CDS             4230..5258
                     /locus_tag="PXB38_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL5353596.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEQLAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            5268..5957
                     /locus_tag="PXB38_001270"
     CDS             5268..5957
                     /locus_tag="PXB38_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL5353597.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            6069..6584
                     /locus_tag="PXB38_001271"
     CDS             6069..6584
                     /locus_tag="PXB38_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL5353598.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            6581..6793
                     /locus_tag="PXB38_001272"
     CDS             6581..6793
                     /locus_tag="PXB38_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5353599.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            6799..7005
                     /locus_tag="PXB38_001273"
     CDS             6799..7005
                     /locus_tag="PXB38_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL5353600.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            6998..7564
                     /locus_tag="PXB38_001274"
     CDS             6998..7564
                     /locus_tag="PXB38_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5353601.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            7561..8016
                     /locus_tag="PXB38_001275"
     CDS             7561..8016
                     /locus_tag="PXB38_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353602.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            8165..8386
                     /locus_tag="PXB38_001276"
     CDS             8165..8386
                     /locus_tag="PXB38_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL5353603.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            8383..8868
                     /locus_tag="PXB38_001277"
     CDS             8383..8868
                     /locus_tag="PXB38_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5353604.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHEIYD
                     IYIRIPLTERVIVKEQDGHLIATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            8861..9325
                     /locus_tag="PXB38_001278"
     CDS             8861..9325
                     /locus_tag="PXB38_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5353605.1"
                     /translation="MSEPIEQVKTAFDHLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWNLKVKYASRELLGFTDEDRQMVEDYVIRALSGSAY"
     gene            complement(9364..9606)
                     /locus_tag="PXB38_001279"
     CDS             complement(9364..9606)
                     /locus_tag="PXB38_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353606.1"
                     /translation="MEAVFAYLLVGSVIFMLITFAFTGFAWVASAIVLILSALVSPFV
                     LVARLFIADKTANDTEKQAIMAYHQAKYGTIEKIRK"
     gene            9652..12585
                     /locus_tag="PXB38_001280"
     CDS             9652..12585
                     /locus_tag="PXB38_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5353607.1"
                     /translation="MSQNLKIQVLLSAMDKLTAPFKSASKSAEQLAQKLKKQKSELST
                     MNKEYARNAAQINQYAKTINPLKNQLTATSQKLKEAQNEAQKLAAKFESTTNPTKRLI
                     KQFEKAKQTVDKLKRAKVEQAQKLDAARRKLSDSGINTERLSKSQQELSHKMKLANRN
                     IAEQADKLGRLNQRAKANAAYAKRVDTVNNMSDRASTLGQRAMAAGLGVGRLLQQPVQ
                     NFMEFEDAMAGVARQVQGLKNESGKFTPEYDIWREKIKGLSRELPLTTTEIANMIESA
                     ARMNVPKEQLEDFVRLNTQMATAFDAQNPDELVEQFGKVTKNFKLSAAAGKDLADVIN
                     YLDDNAISKGNEIIGFMNRVSGIAGIAKISEKNMAALGSTLQTAGATEESSATAVNAI
                     FTRLSSASKKKPVKNGLAALGLNVSKIELGMAKDANATLLSIVEAVKKLPEQKRLGVI
                     ADLVGTEHSKTLALLVSNTEEWRRQIELANSSDALGSMAREFDTRMTTLSAKWQIFKN
                     QLFNSSSEVGVALKESLVGGMDSITAILDKINVWVKANPELTAQIIKWGIALTGSLLT
                     LGLLSLTFSFMFSPLIRFGLFIHKAGGSLKFFAKENAGAIKTLNSWRTVLPAVGGGLK
                     TLGLWVLKLLNPWTYLKGAILLGKSALLGVLGVMKFMLATPLGLLISSIAAGALLIYT
                     NWEKVKAFFGGFFEGFSAAAEPIKQAFAPISPLFDLIANAVSGVWDWLKKLLTPTQET
                     ASSLETAASWGKKFGEWTAAALNLALAPLTALIDGVSWLINNISNISFDGVKNKLSDI
                     GSGIADKVGTLWDKTKAWWNNEPQTKNATSSVAGMVAGITQNLPKGKFSSGGYTGNGG
                     KYEPAGIVHKGEYVMTKEATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKID
                     SRPPLTASQPSPTVAPVSQNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSS
                     LRDRG"
     gene            12647..12826
                     /locus_tag="PXB38_001281"
     CDS             12647..12826
                     /locus_tag="PXB38_001281"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353608.1"
                     /translation="MMFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQ
                     KSQELNEFQREVVYG"
     gene            12819..>13055
                     /locus_tag="PXB38_001282"
     CDS             12819..>13055
                     /locus_tag="PXB38_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5353609.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADE"
BASE COUNT         4129 a         2749 c         2892 g         3285 t
ORIGIN      
        1 aatgtgcagt atatgtatat gcaattaaag aataacgatt tttcctgaca agcaatattt
       61 ttgcgttgag gtgcgtaaaa ttgcgtaaaa agatcgagtt tttaagatcg ctttgcgatt
      121 atatggggct tgtagggatc gcctttttgc atttgcgtat aaatcgacaa attaagtgtg
      181 cgggcgaggt gagggataga ctgcgcgggg ttggaggtgg tgaagtcgtt gaaaaataaa
      241 ggaaaaatta ttttttaagt gtattttatt tgttgttttg atataataga ttgccgaaat
      301 atataatcta atcaggcaaa acttttgctt tatatattaa aaaagcccca atctaggagc
      361 tgtattgtca gtttgtaaag atctgtttta ttgtgtccgc tgtaacaatt tagacggttt
      421 aaatttgata acctcttgac ctaaccactg attaaactct ttcaatcgct cttgcaatgg
      481 ctcaatctcg gtgataaaaa acacctcggc agcatcagcc acgttgccaa aaccgccggt
      541 gttgtttggg ataataccca tcagttgtgg tggcacacgg tgagctgcta acacatcatc
      601 acggcttacg tttttaatat taaaaaattc gtcttttgcc gatacatcag caatcggaat
      661 tatttgaatg ccgtctttgt taccacctgg agaatgtaca aatagatttt tgaaattccc
      721 cacccctttt gatttccgca gttgctctct gatattatcc acatctccct gttttgcgga
      781 gttttccgtc atataaaaca caaagccggc gtgagctcca tttaaaaaat acttacggcg
      841 aaacagagta gcactctcat ttaaccaagc ggattgcaac gccgaaagat attgtggcaa
      901 gccgtaaata tcttgattaa tatcaggctc aagcaagtga tagattgagc ctttggcaaa
      961 ttcgtgttct tggtgatcga atcgttgtgg cacatagtaa aattgaccag cctctaaacc
     1021 ctttcgcaca tattttgcca aaggtgattc gattcgctgt acctgcccaa ggcgatttcg
     1081 caccacctca aaataggcgt tgccaaatac taaataatct ttaacaaacg atgacaaatc
     1141 acggcgtgat aaataacggc tatcaacctc gcaagtggaa agcaaaatat ttgctttggt
     1201 gatgatcgca ctttcgtggt gtgttgatga ccttaacgat ttcgccaagc catcaaagct
     1261 catcggtggg ttataccatt tctcatacat cgccgaacac tccaaataat tgagaatatc
     1321 ggcacggtct aacaccggaa tcgggtcacc aaaactgaaa atttcggttt gtgcttgcgg
     1381 ttgtaagcgg tcattttggg ttaaattttt gcgcaattgt tttttcattt tttgtcctaa
     1441 tcatctaaaa aatctactgt gccggtcgtt tcttccagtt tcccatcaaa cggctcatta
     1501 ataaatacct gcaagcaagc ccacgcaagg tcggcgtggc ttgcctcttc cgaacggtct
     1561 gccacataag tcacttgccg tccgctgttg gtgatctgtt ttttaattgc cataaaactc
     1621 gcaccaacct caacagcgtg cattgagtca aattcaaatc gtcctttgct gataatatcc
     1681 aagcctttta ataccatttt ggatttcagc tctacgttgt aagtaagagc caccgcatca
     1741 ggccgttctt ttttcacgat ttcatacacg ccgacaccaa gccctgtggt atcaatcgcc
     1801 agtctggtca cgttatattt tgcacaaata gcgataattt ctgccgcttg ttcggcaaaa
     1861 tcagcccctt taaaagtgcg atattccaac aaacggaact tgcccccatc gactttcggt
     1921 ggagcaatca ccaccaatgc cgagcggtcg ccggtgtaag acggatcata gcctacccac
     1981 acttctttat tgccaaacgg tcgcatatag ccatcggtga aaacgtagtc tttccaaatt
     2041 tccattgaat cgaccaagca acgctgaatc attgtaaatt taaagacgga ttggttatca
     2101 tcaataaact cacacataaa gagctgctcg aactcatcag gcgagttttc cagtttgagt
     2161 tgctcaatat caaacaggtt acagccacct gcctcggcat cgtagatatt cacgatttgt
     2221 cgccattggc cgtctccgca ttttttgccg tttttcaaat tagcgtgcga aatatcaatt
     2281 tccacttgct ccgctttcgg tcgtttgcgg ttaaacagct tgcccgacca aagcagatag
     2341 gcggaatggg taatgctcga aggggtagaa aaataagtaa tccgatattg tttttggctt
     2401 gccatacccg cagcaacttt gcggatttct tcaaagcggt ttacccaaaa gatttcatca
     2461 aaatagagat tgccgtggta agactgtgcc gttttcgagt ttgtacccaa gaaaattagt
     2521 tgagactcgt tcggcaaggt aatggtttcg ccttttagct ccacatcggc aacccgtttg
     2581 gcgtatgcca caatataggc tctaaattgc aatgcctgtt ttttcgaggc ggaaataaaa
     2641 atctgatttc taccggttac taacgcatca actaacgcct cgtgagcaaa ataataagtc
     2701 gctccaattt gacgactttt aagaatattg cggattcgat gagtcagccc agcttcgtgc
     2761 cattttttct gataatggaa cattccgtct aaaaagccgt ttatcaacag ttcggcttgc
     2821 tcttcggaaa tggcattttg ctcgggcttt ttgcggtcgc ctttattacg gtttttaata
     2881 tttgggttga ggtcggcttc attacctccg ccgttagaat attttttgat tcgtgctgta
     2941 ctttccaaca accgacgtaa agcatccatt tctttgtagt cgttattgtt tttgctctct
     3001 ttcataatca gcaaattcag ccgtgattcc agtgtggctt ccacacgtcc aacggggctg
     3061 atttcgtccc atttctctcg ctttttccaa cttgcaatgg tagagacggg aatatttagc
     3121 tgacgagaaa tttcggtcac ggtgtaacct gcccaatact ttgattgagc ctctcgttta
     3181 tcgtgtagag ggttggcagc caacacctcg tattcagtga ttgtattttc attttccata
     3241 ggtgcgatta tcaaaaatcc accttgttta agcatttgct tgaggctgtg aaacccgatt
     3301 taacacgtac cacacattga aaccgccggc acaaaacaag atcataaatc cgatttttac
     3361 ccctcccctt tagagcaagg aaaaacagat gacaacaaaa tccaaatggt ttgtggtagc
     3421 aacggaagga gcaactacag atggacgcga aattagtcgt gaatggctca cgcagattga
     3481 agaaaattac gacccgaaaa ataactatgg tgctcgtatt aaccttgagc atttccgctg
     3541 gcgttggttt gagaaagatg acccgcattc ttacagctat ggcgatgtgt tagcggttaa
     3601 aacagaagaa cgtgaagacg gcaaattaca gttactggca gaaatcgccc caaccgaagc
     3661 cttagtgaag ttagtcaaag acaagcagaa agtttatacc tctgtggaaa ttgaccttaa
     3721 ttttgcggac acaggcgagg cgtatttagt tggtttggcg gtgactgata caccggcaag
     3781 cctcggcacg gaatacctca cattttgtgc cggtgcaacc cataacccac tagcagaccg
     3841 caagcaaaag ccggaaaacc ttgtgagtga ggcagtagag gcgaatttag aatttactgc
     3901 tgaacctgaa aaaggtgcgt ggctggagaa atttaaggcg atgtttacca aagccaaaac
     3961 cgacaatgac ggcaaatttg ccgaacacga aaaggcaatg gaactgttag ctgagcaatt
     4021 tagcaaagtt tcgacagaaa acgaccgctt gcaaactgaa ctaagcacat tgcaaatcga
     4081 atttaccgaa ttgcaaaaac aagcgggcga atttgccgaa aaatttgcaa aactggaaca
     4141 agaaccgtct gccaattaca ccccacgccc aaaagccact ggtgcgaaag caggtgatgt
     4201 acaaaccgat ttttaattga ggatcacgaa tgaaagattt aacccttgaa aaatataacg
     4261 cctaccttgc acgccaagct gaattaaaca acttgccgtt taatgcattg gcaaccggca
     4321 ttaaattcac agtgcaacca tcggtacagc aaaagctgta tgaaaaggtg cgtgaaagct
     4381 ctgatttctt aaaatctatc agctttgtgt ttgttgatga gcaaaccggt gaaaccttag
     4441 gtttagattc agctcacacc gtggccagca ccaccgatac cagcggtgac ggtgaacgca
     4501 aaaccacctc tattgcgaag ttggtaaaac aaacctacca ctgccaacaa atcaattttg
     4561 acacccatat caattataaa cagttggata tgtgggcgaa attccctgat tttcagcaaa
     4621 aagtggcgaa tgttgcggca aaacaacgca aacgtgactt aattatgatc ggctttaacg
     4681 gcacaagtcg tgcggcaacc agtgatcgca acagcaaccc gttattgcaa gatgtggcaa
     4741 aaggctggtt gcagaaaatg cgtgaagatg ccaaagagcg tgtaatgaat ggcgaaagca
     4801 cagacaacca agttttagtc ggcaaaggtc aagagtatgc caatcttgac gcactcgtaa
     4861 tggacgccac cgaagaactt attgatgaat ggcatcgtga tgacaccgat ttagtggtga
     4921 ttaccggtcg caagttgctt gcggataaat atttcccgat tgtgaatcag caaaacgcac
     4981 caaccgaaca acttgccgct gatattgtga tctcacaaaa acgcattggg ggcttaaaag
     5041 cggtgcgtgt gccgttcttc ccggcgaatg cgattttaat cactaagctg gaaaatttag
     5101 ccatctatgt gcaagagggg acaacccgca agcatattga gaacgtgccg aaaaaagacc
     5161 gtattgaaac ctacgaatca gaaaatatcg actacgttgt cgaagattat ggctgtgcgg
     5221 cattaatcga aaacattaca ctcaaagata aagagtaagg tggaactatg cgaatgagtc
     5281 cggctcgggc tcattttttg cggaaaaccg cagaaagtga gtctgcaacc ccaaaccgag
     5341 aaaaccttga aggcttacaa ggctatgact tagttttagc ccaacttaaa gcccatcaac
     5401 gccaattaaa gaaaatccag tcgattgagc gaaagattga gtttaaacgc aacaattttg
     5461 agcaataccg accttgggtg gaaggctccc ttgccaaagg ctccggtgtg caagacacgg
     5521 ttatcaccac aatgctgatt tggtcgattg atattggcga ttacccaacc gcccttgcga
     5581 ttgctcaata cgttttaatg cacgatttgg caatgccgga gcagtttgaa cgcacaccgg
     5641 caaccgcctt ggttgaagag cttgcagagg cggcaaagaa agcccgagac caaaaacagc
     5701 cgtttgaggc agccgtgctg aaacaggcaa acgacctcac cgctgaattt gatatgcccg
     5761 acccagtgcg agccaaatta ctgcgtgagc taggcgagct aatccaagag gcagagccac
     5821 aaaccgccct tgaacactat caaagagcga tagccctcga ccctcaatgc ggtgcaaaag
     5881 gcttgcgaga caagttagaa aagcaacttg ccaaacaagc cgaagagccg aaaccagcag
     5941 aagaacagaa tgagtaggcg aaagccgaaa tagagcgtat ccacgccagc caaggggcgg
     6001 attttaaagg gtgatttatt cattttgcac ccttttaaaa tccccacccc ttaccttacg
     6061 gaaaccttat ggaacaacgc aatcacgtta ttagtatccc gaaagtgaat ggctatgaat
     6121 ccagcaaaaa tgcgatcaag cccaccgcag aatctgatga aactatcacc aataatggct
     6181 tttttccgaa cattgagcta ctggaggtgc gaaatgcaat gcggattgat ggcacggtca
     6241 ttaatgagcg gctaaaacaa gcggtgattg aggcaatggc aacagtcaat gccgacttaa
     6301 aagcctatcg cctcaatgca gagcaagcac aaaaagcgaa cttgcaagcc tgtgatgatg
     6361 agcaaatcaa cggcgaaagc gtgctggttt acaaatataa acgagcggtc tattgccttg
     6421 cagtagcgaa cctttacgaa cgctaccgca gttatgacag caccaaagac ggccacgaca
     6481 aagccgaaga gctagaaagt accgccggtg atttgaaacg agattaccac tttgccgtgc
     6541 gtgatatttt gggcgaaaac cgaatgatta gtgaattgat atgaacacct tgattgcacg
     6601 ccaagacgac accttagacg agctgatctt tcggcactac gggcaaacgg caggcttagt
     6661 cgagcaagcc ttagaatata accccgaact ggctcatttg ccacgtttgc cgatcggcac
     6721 tgtagttaca atgccggata ttgagagccg ttttgcaacg gtggcgaaat ccagcgtgca
     6781 actttgggat taaaaaatat gcacaaaact gaacaagcct cctattttgg ggcaattttt
     6841 ggcttttttg gtagcctcac cctatctgat tggggggtgg tagtgagtat tctggtagct
     6901 attttaacct tattacttaa ttgggcatac cgagccaaag aatacaaact gaaagagcga
     6961 gaatttgagc taaagctaca aaaccaaggg aaaaagaatg agtaaaagtg taaaagttgg
     7021 cgtatttgtc tgctccgttg cagctattat cgggacggta aagcaatatt acagctccga
     7081 aatccgcacc agcgaaacag gcttagccat tatcggcaat gcggagggtt gcagacgtga
     7141 tccgtataaa tgccctgccg atgtaatcac ggttggcatt ggctcaaccg aggcaagcgg
     7201 tgagaaaatt aatgtcaatc acaaatacac cgataaagag attgccgagc gttggataaa
     7261 agatcttaaa atagctgaaa ggtgtatcaa tcgttatttt aatggcgaca aaatgaacga
     7321 aaatcagttt tcggcgatgg tatcagcagc atttaatatg ggatgttaca accttagatt
     7381 ttatccaaat gaaaatggta aatacattca gacaacaatc cataaatatg ctatggctaa
     7441 ggattttaaa gcgatgtgta ataggatacc tgattttaac cgctcgggag gtaaagtgct
     7501 aagaggtttg aaaatccgcc gagaaaaaga aaaagccctg tgtctcgggc aggaggttaa
     7561 atgattgtca aactctgcca aatgaccaat aagcatttca gcccgctaat gattgtgctg
     7621 gtgctagttg gcgtattagc caatttcgtg cagtttcgcc aaaacgaaag cctgaaagca
     7681 gacttacagg cacgcaccac gcaaaaccaa ctgattcaag ccgataaccg caatttagcc
     7741 aatcagcttg aaaacagcca aatacagctt gaggcgtatc aaaaacaggt ggacgacctc
     7801 aatcagaaag tgttagccaa aatgaaacaa gcggagcaac gaagtaatga aatccttaac
     7861 gaactggaaa agcataaaaa gtgggctgat tctgccgtgc ctcctagcgt tggcaagctg
     7921 ctcaaccaac gaaagcgtgc ggtatcacac cctcaaatcg aacccgataa tctgtccgaa
     7981 aaggctggag tgccaaacac cggcaaccga gattaacacc aacggtgatc ttgtcaaagc
     8041 actagacaaa agactcaaca ccattgaggt atgccaagtc atcatcgaat cgttcgagca
     8101 ttgcatcgag caatacaaca aaatcaacca aggcgagtga tcgccttttt taataaggac
     8161 gactatgtca gaccaaatcg accgagccaa cgaattagcc gaaaaagcca gagaggcggc
     8221 acttgcaaaa attctgcaaa atcagaccgc ttgcaccagc ctttttgagt gtgaggattg
     8281 cggagagcca atccccgaaa aacgccgaga aatggttatt ggttgcaccc gttgcattga
     8341 gtgccaaacc atttacgagc ataagcaaaa aggctaccgc agatgattaa acctgatcgc
     8401 ttgcgagccg tgctcacaca aaccattgat atattccaag ctaaccccga aaagctgatt
     8461 ttgcaatatg acaaaggcaa aattaaaagc aaagggagcc aaagccattc gtttgaatac
     8521 cactacgatt tagagctaat cgtggtggat tttccgtatc accccgacgt gttgtttgtg
     8581 ccggtgctaa attttgtgcg aaatgaacaa tgggagctac tgcaaaaccc ggaactacaa
     8641 gacaaaatcg aatttgaaat cgaccacaac aatcacgaaa tctacgatat ttatatccgc
     8701 attccgctca cggaacgggt gatcgtgaaa gagcaagacg gacacctaat cgcaacccac
     8761 gccgatgaac cgaaccttgc cgatgtttcg ccatttaccc gtttaaccga atatgaggtt
     8821 tacctcaaag acgaactgat ttatcagtgg gcagagccaa atgagtgaac cgattgaaca
     8881 agtaaaaacc gcctttgacc acttgctaaa taatatcagc aaacctcgta gacggttgat
     8941 gtatcaacaa atcgggcgag agttagcacg ctcgcaacgt agacggatta aagcacaaca
     9001 aaaccccgac ggctcggcat acgaaccacg caaaaagccg aagaaagggg taaaaagcaa
     9061 aattaaatcg ggcaagatgt ttgacaaaat cacccagcca cgctttatgc gactacgcct
     9121 cgaaagcgag ggtgtcagcc taggctatga aggtggtgat gcggtcattg cccgaatcca
     9181 ccaacaaggc ttaatcggac gagtgcggaa agattggaat ttaaaagtga aatatgccag
     9241 ccgtgagttg ctgggcttta ccgatgaaga cagacagatg gttgaggatt atgtgatcag
     9301 agcgttaagt ggctcggcgt attaaaaaag cggtcaaatt tgaccgcttg tactgaaaat
     9361 agtttatttt ctgatttttt ctattgtccc atatttagct tggtgataag ccataatagc
     9421 ttgtttttcg gtatcgttcg ctgttttgtc cgcaataaat aaacgagcca ctaaaacaaa
     9481 tggagagacc aatgctgaaa gtatcaaaac aatcgcactt gcaacccaag caaaacctgt
     9541 gaatgcaaag gtaattaaca taaaaataac ggagccaaca agtaaataag caaataccgc
     9601 ttccatcttt ctcacctttt tgattaatca ttatcaatct agagatatat tatgagccaa
     9661 aacttaaaaa ttcaagttct tttgtcagca atggataaat taactgctcc attcaaaagt
     9721 gcatcaaaat cggctgaaca attagcccaa aagctgaaaa agcaaaaaag cgagttaagc
     9781 acaatgaata aagagtatgc aagaaatgca gctcaaatta accaatacgc aaaaactatt
     9841 aacccactta aaaatcaatt aacggcgact agccaaaagt taaaagaggc tcaaaatgag
     9901 gctcaaaagc tcgctgcaaa atttgagagt acaacaaatc caaccaaacg cttaattaaa
     9961 caatttgaaa aagccaagca aacggttgat aagctgaaaa gagccaaggt agagcaagcc
    10021 caaaaactgg atgcggctcg ccgcaaattg tcagacagcg gtattaatac agagcgattg
    10081 tcaaagtcac agcaagagtt aagccacaaa atgaaactgg ctaacagaaa tattgcagag
    10141 caagcggata agctaggccg attaaatcaa cgtgcaaaag cgaatgctgc ttatgctaaa
    10201 cgagttgata ccgtcaataa tatgagcgac cgagcttcca cacttggtca gcgtgctatg
    10261 gctgctggtc ttggtgtagg gcgtttatta cagcagcctg tgcaaaactt tatggagttt
    10321 gaagatgcca tggctggtgt agctcgtcaa gtgcaagggc taaaaaatga aagtggcaaa
    10381 tttacgccag aatatgatat ttggcgtgag aaaatcaaag ggttatcaag agaattaccg
    10441 ctaacgacaa ccgaaattgc caatatgatt gaatctgctg ctcgaatgaa tgtaccgaaa
    10501 gagcagttag aggattttgt cagactcaat actcaaatgg caaccgcttt tgatgcacaa
    10561 aacccagacg agctagtcga gcaatttggc aaggtcacta aaaactttaa actttcggct
    10621 gctgcaggca aagatttggc agatgttatc aactatcttg acgataatgc gatctctaaa
    10681 ggcaatgaga ttattggctt tatgaatcga gtatcaggga ttgcaggtat agctaaaatc
    10741 agcgaaaaga atatggctgc tttaggctca acgctacaaa ctgccggagc aaccgaagaa
    10801 agctcggcga ctgcagtaaa tgcgattttt accagattat cttcggcaag caagaaaaaa
    10861 ccggttaaaa atggcttggc agcattgggg cttaacgttt caaaaatcga gttaggtatg
    10921 gcaaaagatg ccaacgccac gcttttaagc attgtagagg cagtcaaaaa gttaccggaa
    10981 caaaaacgat taggtgtaat tgcagatctt gtcgggacag aacatagtaa aacccttgca
    11041 ttgttagtat caaacaccga agaatggaga agacagattg aacttgctaa tagtagcgat
    11101 gctttaggta gtatggcaag agagtttgat actcgaatga caacgctttc ggcaaaatgg
    11161 caaattttta aaaatcagtt atttaattca agcagtgaag taggtgttgc tctcaaagaa
    11221 agccttgttg gcggaatgga tagcattaca gcgatcttag ataaaattaa tgtttgggta
    11281 aaagcaaacc cggaattaac tgctcaaatt ataaaatggg gtatagcctt aacaggctct
    11341 ttgctaacgc ttgggctatt aagtctaaca ttctcattta tgtttagccc gcttattcgt
    11401 tttggattat ttatccataa agcaggtggg tcacttaaat tttttgcaaa agaaaatgca
    11461 ggagcaatca aaacattaaa tagttggcga acagtattac ctgcagttgg aggtgggctt
    11521 aaaacgttag ggctgtgggt attaaaatta cttaaccctt ggacttacct taaaggtgct
    11581 attttgttag gtaaatcagc ccttttaggc gtgctgggcg taatgaaatt tatgcttgca
    11641 acaccactag ggttattaat cagcagtatt gctgcaggtg cgttattaat ttacacaaac
    11701 tgggaaaaag taaaagcctt ttttggtggc ttttttgagg gatttagtgc tgccgctgaa
    11761 ccgataaaac aagcgtttgc tcctatctca cctctttttg atttgatcgc aaatgctgta
    11821 tcaggtgtat gggattggtt aaagaaactt ttaacaccaa cccaagaaac agcctcaagc
    11881 ctagaaacag cggcgagttg gggtaaaaaa ttcggcgaat ggacggcagc agcgttaaac
    11941 cttgctcttg caccacttac agcattgata gatggtgtca gctggttgat taataatatc
    12001 agtaatattt catttgacgg tgtaaaaaat aagttaagtg atattggtag cggtatagcg
    12061 gataaagttg gaacattatg ggataaaacc aaggcttggt ggaataatga gcctcaaact
    12121 aaaaatgcaa catcaagtgt tgctggtatg gtggctggaa ttactcaaaa tttacccaaa
    12181 ggcaagtttt cttcaggcgg ctacactggc aacggtggca aatacgagcc tgccggtatt
    12241 gtacataaag gcgagtatgt aatgaccaaa gaggcaactg cacgcttggg tgtggcaaat
    12301 cttaaccggt taaattatgg caaagttgct gggctaactg cacttgcgtc aagtgttgcg
    12361 tttgctcaac caatgcctgc ggtcaaaatc gacagcagac caccgctgac ggcaagccaa
    12421 ccaagcccaa cagttgcacc ggtgtcgcaa aatatccata tcaccatcaa cgccaccggt
    12481 gggcaagacc cacaagcaat cgcccgactg gttgcaatgg agttggaaaa acaacaacgc
    12541 caagcacaag caagagcaag atcgtctttg agagacaggg gctaatttga caaagtagaa
    12601 tgaaaagcgg acaatgctct aaattgtccg ctttttatag gagcaaatga tgtttaaaga
    12661 aaaaggatat gatgaatttg tgaatgaatg tgtgcgaaaa ggtagagaag aacacaaagc
    12721 tggtttagga tttacgctag agcaatctcg cttacatatc aaaaaaacca ttgagcaaaa
    12781 atcacaagag ctaaacgaat ttcagcgtga agtggtttat ggctaaaatt accattaaac
    12841 cacaagcatt gagtcaattt gacgagattg taaaaagtgt tatcgaattt accggttttg
    12901 aaacgagtgg tattcgatta caaagtgata tttttgacaa aatagagcaa attgcattta
    12961 tgccactctc tggaagagca agagaagatg ggacaagaga aactttcgtc agacgttatc
    13021 gtattgtgta cgattacgat aggcaggcag atgaa
//
LOCUS       DANLUT010000058        12877 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLUT010000058 DANLUT010000000
VERSION     DANLUT010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12877
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..960
                     /locus_tag="PXB38_001283"
     CDS             <1..960
                     /locus_tag="PXB38_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL5353610.1"
                     /translation="VNRSLLVLYQCSQLLTAKPINKEVLNQVLKTVFDNEHLLGIDLQ
                     VYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPDGRLIQNVSEMIGRS
                     LYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKLAKTDEKRNEILT
                     VFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSAQIRLSCKLPSHM
                     FNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQDNGVGLAAHTQP
                     EGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            1011..1529
                     /locus_tag="PXB38_001284"
     CDS             1011..1529
                     /locus_tag="PXB38_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5353611.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEQGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            1572..2171
                     /gene="rdgB"
                     /locus_tag="PXB38_001285"
     CDS             1572..2171
                     /gene="rdgB"
                     /locus_tag="PXB38_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL5353612.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTSLSAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            2168..2488
                     /locus_tag="PXB38_001286"
     CDS             2168..2488
                     /locus_tag="PXB38_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL5353613.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVAIGTA
                     VVIR"
     gene            2492..2944
                     /locus_tag="PXB38_001287"
     CDS             2492..2944
                     /locus_tag="PXB38_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL5353614.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(2985..3566)
                     /gene="lpcA"
                     /locus_tag="PXB38_001288"
     CDS             complement(2985..3566)
                     /gene="lpcA"
                     /locus_tag="PXB38_001288"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL5353615.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            3875..4834
                     /locus_tag="PXB38_001289"
     CDS             3875..4834
                     /locus_tag="PXB38_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL5353616.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            4827..6578
                     /locus_tag="PXB38_001290"
     CDS             4827..6578
                     /locus_tag="PXB38_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5353617.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVIMSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            6581..7546
                     /locus_tag="PXB38_001291"
     CDS             6581..7546
                     /locus_tag="PXB38_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5353618.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFLATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            7533..8426
                     /locus_tag="PXB38_001292"
     CDS             7533..8426
                     /locus_tag="PXB38_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5353619.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASHWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            8497..9582
                     /locus_tag="PXB38_001293"
     CDS             8497..9582
                     /locus_tag="PXB38_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5353620.1"
                     /translation="MALLDIRHLSIEIDTPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMCS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAENTPFVVAEIAEKEAF"
     gene            complement(9591..9821)
                     /locus_tag="PXB38_001294"
     CDS             complement(9591..9821)
                     /locus_tag="PXB38_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL5353621.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            9951..11033
                     /gene="leuB"
                     /locus_tag="PXB38_001295"
     CDS             9951..11033
                     /gene="leuB"
                     /locus_tag="PXB38_001295"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL5353622.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLPPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(11120..11515)
                     /gene="msrB"
                     /locus_tag="PXB38_001296"
     CDS             complement(11120..11515)
                     /gene="msrB"
                     /locus_tag="PXB38_001296"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5353623.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            11740..12744
                     /gene="gap"
                     /locus_tag="PXB38_001297"
     CDS             11740..12744
                     /gene="gap"
                     /locus_tag="PXB38_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL5353624.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         4009 a         2250 c         2762 g         3856 t
ORIGIN      
        1 gtaaatcgtt ctttactggt attatatcaa tgctctcaat tattaactgc taagccgatt
       61 aataaagaag tgttaaatca agtacttaaa acggtatttg ataatgaaca tttgctaggg
      121 attgatttac aagtatatgg ggctgaatat tggaatgtat caatagacaa taaaccaagt
      181 ttagattggg tttctgctga aattgcaata gaaaatgaaa aattgggtat cttaagctgg
      241 aaaccctcac tggtttgtcc tgatggacga ttgatccaaa atgtgtcgga aatgattggt
      301 cgtagccttt atgtagtgca gatgcaaaag caacagcaac aattggtact catggaggag
      361 cgtgcaatta ttgctcgtga gttacacgat tccttagccc agtctcttac gtttttcaaa
      421 attcaggtta gcctgcttaa gcttgctaaa acagatgaaa agcgtaatga aattttaact
      481 gtatttgaaa aagcgttaaa tgatgcttac agccaattaa gggagctgtt gacgacgttt
      541 aggctaacga ttcaagaagc gaatttacaa caagcgttag aaaaaatttt agaaagctta
      601 agaccgaaaa cctcagcaca gattcgctta agttgcaaat taccttcgca tatgtttaat
      661 gctcagcagc aagttcacgt attgcaaatt gtacgagaag ctgtgattaa tgctattaag
      721 cattcgcaag ccactgaaat taatgtgatt gctgaaacaa atgatgatgg tgaacattgt
      781 ttgactattc aagataatgg cgtagggctt gctgcccata cgcaaccaga agggcattat
      841 ggactgacga ttatgcaaga acgggcggct gaactcaaag ccgaattttc gattgaaaat
      901 gtggaaagtg gcggagtaaa agtacaggtt ttattgccga gtatgattag caagcggtaa
      961 taaaatatta attttttgcg tattattggc aacgaataaa aggataacaa atgcaattcc
     1021 gaaaagcagt agaagcggat tttgagacaa tattggcaat ttataatcaa gcaattccca
     1081 ctcaccaaat taccgccgat ttagaactag caactacgca aaatcggcgg aagtggttcg
     1141 attttcacct tgaaacagcc caatatccta tttgggtggt cgaagatgaa caaggcattg
     1201 ctggctggtt tagtttttca ccattttatg aaagaccggc atttttacat acttcggaaa
     1261 tcagtatcta tttagaccgc tattccaaag gaaaaggcta tggctcaaaa attattgagt
     1321 ttatgcaagc tgaaatgctt aatcacaata ttcatacgtt gatggcgtat gtgtttgaat
     1381 taaatacagt gagccaaaat ctaatgagaa aacacggctt tgaacaatgg ggaagatttc
     1441 cgaatattgc taatatggga aaagatgaga aaggtgagga taaatggcga acgttgctga
     1501 tgatgtctta ccaaaaaggt atcgaataac aagcggtgat tttttagaat atttttgcaa
     1561 ataaggacaa tatggaaaag acaaaaattg tacttgcaac aagtaatgca gataaagtta
     1621 aagaaatggc agatgtactc tcacaatttg gttttgaggt ggtggctcaa agtgaatttg
     1681 ggattgaatc accggaagaa accggtttga cttttgttga aaatgcgctg attaaagcac
     1741 gatttgctgc taaaatgaca agtttatcgg cgattgccga tgattcaggt ttatcggtta
     1801 tggcacttgg tggtgaaccg gggctatatt ctgcacgtta tgccggagag caggcaaccg
     1861 atgccgataa tcgccaaaaa ttactagcca aaatgcaagg gcaagagaat cgtctggcga
     1921 aatttgtcag ttgtatcgtg tttttaaaac acgaaactga cccaacacct tatattgcgt
     1981 cgggtgaatg tttcggtgaa attttgacgg aagaaagagg tgaaaatggt ttcggctacg
     2041 attccctgtt tttctaccca ccgaaagctt gcacttttgc cgaattagaa accaaagaga
     2101 aaaaagcgat ttcacaccgt gcaatcgcac tagagcaatt aaaacagcaa ttagcaggag
     2161 agaataaatg attattacaa ctacacctac gatagagggt aaacaaattg tagaatacaa
     2221 agggttagta tttggcgaag tagtttctgg ggctaatttt atccgtgatt tcttagccgg
     2281 tatcaccgat attattggcg gacgttcagg tgcttatgaa agcaaattaa acggtgcaag
     2341 aaaagaggca ttagctgaat tagctaagga ggcacaaaaa gtgggggcaa atgcggtggt
     2401 tggcgtttct atggagtatc aatcaatggg cggcgataaa ggaatgttca tcgtggtagc
     2461 gattggtact gcggttgtaa tacgttaatt tatgcagttt gaacaacact ttgaagcaaa
     2521 tttctggcag aacaaatcgc tacttgaaat gaatgatgct gaatgggaag cattatgtga
     2581 cggttgtggt aagtgctgct accggaaata tattcaggga agagggcggc gtgaacggct
     2641 ttactatacc tcggttgcct gtaatttatt agatgtgaat acaggccgtt gtatgaatta
     2701 ctcgaaccgt tttaaaattg agtcggattg tacaaaatta actaaaaaga acttacctga
     2761 ttttggctgg ttgccaaaaa cctgtgctta tcgtttactt tatgaaggaa agcctctttt
     2821 tgattggcac cctttaatct ctaaagatcc tgattctgta aaaaatgccg gaatgctgat
     2881 tgctaacggt attcacgaaa aagatgtgat tgattggttt gagtttgtta ttgatgaagt
     2941 atgagaaaaa ggcgtttggt gcaaacgcct ttttgttata gagattaggc tttttccatc
     3001 tcaaattcaa ttaacatcat caaaatatga atcactttaa tgtgaatttc ttggatgcgg
     3061 tctgcgtaac ggaaatgagg tactcggatt tccacatcgg ctaatcctgc catttgcccg
     3121 ccatctttgc cggtcattgc aatcactttc atgccttttt ctttggcaac tttgatcgca
     3181 tttaacacat ttttagagtt accagaggtt gatagaccaa agagtacatc gcctttttgc
     3241 ccaacggcct ctagataacg agagaagaca tattcataac cgaagtcatt acttacacag
     3301 cttaaatggc tgacatcgga aatagcgatt gccgggtatc cgggacggtt ttcacggtaa
     3361 cgacctgtta attcttcggc aaagtgcatc gcatcacagt gcgaaccgcc attaccgcaa
     3421 gaaatcacct taccaccttg cttgaaacta tttgcaatca gcatggcggc atcttgaatt
     3481 aatttaatat ttttttcatc agacataaat ttgtctaata catctgcagc ttcttgaagc
     3541 tcagctttaa tttgttctaa atacatcatt tgctcctttg tttgcaaaac gcttaccttt
     3601 aaacatcggc tttaccaatg ggggtagcga gtaaaaaatt cgttttttat gaccgcttga
     3661 ggcataaaaa gtgcaataag tttagaagat ctatgctgta ttgtaaacct aataacttaa
     3721 ataatctgaa tagggttgta aacaaaagtt tccaaaagag aaaaatagcg gtatgatcgc
     3781 ctcacaatcc ctctcgcatt gttaactcta gtagctaata tcaggcttta agcgtattaa
     3841 acaatgcaca aatttgctat ttataggaga ctatatggtc gtaaatccag aatcttttga
     3901 acagataatt ggacaatctg taaagataaa agaggttgtt gaacaagcaa aaaaatttgc
     3961 caaccttgat gcaccattat tgattcaagg tgagacggga acaggaaaag atttatttgc
     4021 caaatcttgt caccattttg gatctcgtcg aatgcaaaaa tttattgccg tgaactgtgc
     4081 cggtttaccg gctgaagaag cagaatcgga aatgttcgga catcgtggca atggcgttga
     4141 gtccgtcggt ttttttgaat atgctcacgg tggtacagta ttattagact ctatttctga
     4201 gttatcgctg gaaatgcaag ccaaattatt gcgcttttta aatgatggct cttttcgtcg
     4261 agtgggcgaa gatcaagaga ttcaagtcaa tgttagggtg atctgtactt cattacagcc
     4321 tttgtcatta ttagttgaaa aaggcaaagt aagagaagat ctgtttcatc gtttaaatgt
     4381 tctcacttta aatttaccac ctttgcgaga tcgaaaagag gatattccat tattagctga
     4441 ttactttatc gcccaaatta gcaatcagtt gggggtgagc aaattagagt atgataatgt
     4501 ttttttgcaa gcattgcaga attatcactg gcgaggcaac ttaagagagc tttataacgc
     4561 actttatcga gcttgtacac tttcgcatag ctaccgttta gcggtaaaag atcttcattt
     4621 acccagagat atggaggcga tgattgaagt acgtgaggag gcgacacttg aggaaatgat
     4681 gagccagtat gaagcccaat tattgcacca attttatgca gaatatccga gtacccgaaa
     4741 attagcacaa cggctcggac tttcacatac tgcggtggca aacaaattgc gtcaatatgg
     4801 gttaacaaaa aatggaaaca gtaaagatga ataaactagc ggtcattttt tcagtatgtt
     4861 ttgcaaattt agggctaaat tcgaccgctt acgcagcgcc aagtattcct caagagctac
     4921 ttgaaaatag ccttgtgtat tgcactactt catcgggatt ctcttttaac ccacaaaaat
     4981 ctgatgtgag ttcgaatatg aatgtggtaa cagagcagat ctacgataaa ttagttgagt
     5041 ttaatccgaa aaaaaatcga ctagagcctg ctttagctga aagttattca atcagcgacg
     5101 atggtttagt gattacatta cgtttaagaa aaaatgtcgc ttttcataca actccatggt
     5161 ttactccgag tcgtaaatta aacgcagaag atgtggtgtt ttcgctaaaa cgaatgattg
     5221 gtaaagaaag tgatttacct gaagtgaaaa gtgagcctga aagtgtatta caccaccagc
     5281 gacaaagcta tatttaccaa aaaacagcgg ggcagattta ttttccttat tttgaaagtg
     5341 ttgatttagc gaataaaatt gccagcattc attctccgtc aaatgacatt gtaaaaattg
     5401 aattagtccg tcctgattca gcattgttgg cgcatttagc cagccaatat gcagttatta
     5461 tgtctaaaga atatgcttta cagctcaatg cagatgataa cttagttcaa ctggatttat
     5521 taccggtagg aacaggcgta tatcaacttg aaagttatga aaataatgat tatgtgcgtt
     5581 taaaaccaaa tatgaattac tggggcaaaa aagcatatat tcaaaatatg gtcgtagatt
     5641 tttccacaga agcgaccggc aggatggcaa aatttttaaa taatgaatgt gatgtggttg
     5701 cttttccgga acctagccaa ttatcagtgt taaataatcg gcagcttatt agtagtaaag
     5761 gtgctaattt ggtttattta gcattcaata tgcaacgggg tattgggcag gatttggcat
     5821 tacgccaacg tattgcacgc ggcataaatc gcaaacgtat tgcagagaaa ttattttatg
     5881 gtacaggtga agtagcggat aacctattac caacagcttt gtggtcgaaa aaaaataatg
     5941 gaagctaccc ttatcaacca caccaaaatt caggtgagca agcggttgaa atgcatgaca
     6001 gtattataaa tcggtcttta gatagcaaaa cagagaccga agaagtaaac caaaaacagc
     6061 gcttaaaact gtgggtaatt gatgaaaaac gagtttataa tcaacaccca ttaaaaatgg
     6121 cagaaatgat acgtgctgat ttagctacgc aaaatttaga ggtcgaaatt cgcgcagtaa
     6181 gtcgagctta tttggtgcaa cagcttgcta ataaaagtgc ggattatgat ttgattttag
     6241 gtggttggtt agcaaataat cttgatccta acagtttttt ggaggcctta ctcagttgta
     6301 aagctgcgga aacggtgact aatttatcaa attggtgcaa tgaagatttt gatttttggt
     6361 tacaaacagc ccgtctaagt gatgatccgg catcagctaa tttattgtat gaatttgcac
     6421 aaaaattatt agaagagcaa ttgcctattc tccctttaat gaatgctaat cgtgtattag
     6481 tcataaaaga tggagtgaaa caggcagata tttccccttt cggccaggta aaattatcag
     6541 agttacgttt gggcttgggg cataaaaaag gaaactaatt atgctgattg tcttttttcg
     6601 aaaaattttt ctaaccttga ttacgttgat ttttttgtca cttatcagtt ttaatattct
     6661 gttacgagat ccattaaacc acttagccga gttaggctgg tttgaggctt attgttatta
     6721 tgtaaaatct ctgctaaatg gtgattttgg tattagtttc agtaatggag aaccgctcac
     6781 agcgcaaatt ttacaggtgt tcctggctac aattacgctt tgtttatcgg ctctcattgt
     6841 ttctttaatt attggtttgc ctcttggttt ttttgcggct actcagcaaa aaaatatggt
     6901 tgggcgatta ttaaatacac taggttcatt gagtttagcc gtgccggtat tttggctggc
     6961 attagtgcta atgtattacg cttctctcaa tcagtgggaa gtgtcagcaa ttggagaaat
     7021 ccattcgctt tatccgaaac agatggtaac cggctttttg ctattagata tttggttatc
     7081 tgatgtacct tataaattaa aaatgatgca gagtgcttta catcacttag ctttgccgac
     7141 attagtcttg gctgtgccag ctacattaga agttatgcat attactcaag ctagagcagg
     7201 ttatgtaatg aaacaaaatt acattaaaat agcgaaaacg cgtggctgga caccgtttag
     7261 agtttggaga acgcatatta tttgtaatac tttacctgca ttattaccta tgattgcccg
     7321 tacctttatt ttaatttttg ccttcggtat gttaattgag aacatattta gctggggagg
     7381 aattggacgt tggctgataa atgcccttgc tattcaagac tataatgcga tttcagcggg
     7441 agtagttgca atcggggtgt ttgtgttatt agtagatatg gttacaggct ttgtgcgggt
     7501 gatgttagac ccatcagata aaaaggattg gtatggcagt tattaaagaa cccgagcaat
     7561 ttagagaaac caacgcattt aaggcatttt ggtttcattt ccgacaagat aaacttgcac
     7621 ttggcagttt ttatcttttt ttgctattac tggctctcat ttttgttggt agtttgcttg
     7681 ctccttacaa ttataatgaa caatttgttg gtttagaatt aatgcctccc tcttgggacg
     7741 acaaaggtca aatcagccat tttttaggca ctgacgattt aggacgggat attttaagcc
     7801 gtattatgta tggtttttac tacacgcttg gttccgcact gatgattacc ttattaattg
     7861 cgattatcgg cggtatgatc gggatttatg ccgggctgaa aaaaggacgt tcattttggt
     7921 tgattagcca tttgttcgat acctttttat ttatgccgat tttattgatt gcgatcatca
     7981 ttgcaacctt aatggaagcg agtttggtca atgcaatgtt ggcgattttc ttagcgatgt
     8041 tgccgcattt tatccataaa atttatcaag caaccgaaaa acaactcaaa aaagagtaca
     8101 tcattacctt aaagctagac ggtgcaagcc attggtattt aattcgagaa gtgattattc
     8161 ctaatcttac cggcgtggca attaaagcac tttcacatat ttttgtgatc gccatattag
     8221 atattagtgc gttaagtttt attatgctgg gggctaaaag cccgacccct gaatggggag
     8281 cgatgattcg tgaatccatg gaactgattt atatagctcc ttggacggtg atattacctg
     8341 gcttagcaat tatttttagt atttttaccg ttacaatact tggtacacgc ttaagcgtga
     8401 tttttgaaaa ataccgtaaa gaatagtatt taaataggat actgacacat aacaagcggt
     8461 catttttaag taaaatttta cagattaagg aatagtatgg cattacttga tattcgccat
     8521 ttaagtattg aaattgatac gccaaaaggc agagtaaaaa tggtggataa catcaacctg
     8581 actgttgatg agggcgaaat ttgtggcttg gtgggagaat ctggttcggg aaaaagcctc
     8641 atagccaaag tgatttgcgg tatgattaaa gatgaatgga ttgtgagtgc agatcgcttt
     8701 cgctttgacg atattgaatt actgaaactt tcgccagcgg aacgccgaaa attggtaggc
     8761 gatcatattt caatggtatt ccaagatccg cttactagcc ttgacccaag ccagcaaatt
     8821 ggtaaacaac tgatgcaaac cattcaattt agagggaagt ggtggcaacg atttgggtgg
     8881 aaaaagaaaa aagcaatcga gctactacac cgtgttggta ttcgtgatca tcaagatatt
     8941 atgaaaagtt acccaagcga tattaccgaa ggcgaagctc agaaagtgat gattgcaatg
     9001 gcggtggcaa atcagccccg attattggtg gcagatgagc cgactaatat tatggaatca
     9061 accacgcagt tgcaggttta tcgcttgctt tccagtatga atcagaattt gggaacctca
     9121 atcttgctgg tgagtaatga catgtgtagc attcaaaatt gggttgattc ttacaatgtg
     9181 ctttattgtg gacaaaccgt tgaaattgcg gataaagaga gcattcttga atcgtcttac
     9241 cacccctata ctcgagtgtt actcaatagt tcgccggact tttctcagcc tttagccttt
     9301 aaaagtagct taaatacgct acgaggctca gtcccgatgt tacaagaaat gccgattggt
     9361 tgtcgtttag gccctcgttg cccttttgca caaaaaaaat gtatcaacaa accgccatta
     9421 gtgaaagtaa aacagcacga gtttgcctgc cattttccga ttaactttag agaacaaaat
     9481 ttgcttaaaa ataaaacgga aaatacgccg tttgtggtgg ctgaaatagc ggaaaatacg
     9541 ccgtttgtgg tggctgaaat agcggaaaaa gaggcgtttt aatgtggtta ttattggcta
     9601 agtgtaacgg gtaacattaa agtatctaat acgaaactca agggtaaatc gatcaccgca
     9661 agcaccgcga atataccgcc ttcttgcatt acttggaaat cttttattac gccggcataa
     9721 acacggtaat cctgttcaac caagcttagt actgtgccac aagcggtgag gttaaacatc
     9781 aaatagagta gaaaaacgag tttacaagcg gtcaatttca tcaaaaaatc tccaaatacg
     9841 cttttatttt acgctatttt tatcgggttg gcgtaaaatt cgttttaaaa acagctattt
     9901 tcaggcagaa tgtagccgaa tcgacattaa atatactaag aggatcttat atgcaaactt
     9961 acaacattgc agtgcttgcc ggtgacggca ttgggccgga agtgatggca gaagctatca
    10021 aagtgcttga agcgactcaa caaaaatttg gctttaaact aaattttaat caatataaca
    10081 ttggtggagc agcgattgat gctcaaggta aagcgttacc cgaaaatacc ttaaaaggct
    10141 gtgaagaggc agatgcgatt ttgtttggct cggtaggtgg cccgaaatgg acgcatttac
    10201 cacctgatga gcaacctgaa cgaggttcgc tattaccact gcgtaaacat ttctcgctat
    10261 tctgtaattt acgccctgct gcattgtatc aagggctgga aaaattctgc ccattacgtg
    10321 ccgatattgc tgctaaaggt tttgatatgg tggtggtgcg tgaattaacc ggcgggattt
    10381 attttggaca gccgaaaggc cgtgatggtg aaggtgcgca aacgagagcg tttgacaccg
    10441 aagtatacta caaatatgaa atcgagcgta ttacccgtgt ggcgtttgaa tctgcaatga
    10501 aacgtaaaaa acacgtaacc tctgtggata aagccaatgt gttacaaagc tcaattttat
    10561 ggcgtgaaac cgtcacggaa gtagctaaag agttcccaga agtcacgctt gagcatatgt
    10621 atattgataa tgcgacaatg cagctaatca aagcacctga atcgttcgat attttattat
    10681 gctcaaacat cttcggcgat attatttccg atgaggctgc aatgattaca ggttctatgg
    10741 gcatgttgcc ttcagccagc ctcaatgagc aaggtttcgg cttatatgaa ccggcaggcg
    10801 gttcagcacc ggatattgcc ggtaaaaata ttgcgaatcc gattgcgcaa attttatcag
    10861 ccgcaatgat gttgcgttat agctttaact taggtgatgc tgctgatgcg attgaaacag
    10921 cgatccaaaa agcccttgct gatggctacc gtaccgctga tttagctgat gacagcaaac
    10981 cgctttctac ctcagaaatg ggcgatatta ttgcgaaaaa tattctcgct taaggctaga
    11041 agttaaatag cacaagcggt cattattcgc caaatttttg caaattttcc gctaataatg
    11101 accgcttgtt tattactcgt tagccgtcaa tctcttcgcc tgtttcttcc cacttaaaat
    11161 tcaatgccgc agagttgagg caaaaacgca accctgttgg tggtgggccg tccggaaaaa
    11221 cgtgtcccat atgcgaatca caattcccac aacgaatttc gatacgatga cgtcctaagc
    11281 tgtaatcatc taagtaacgt agtgacgatt ctgaaatcgt ttggtaaaaa cttggccagc
    11341 cacaaccggc atcaaattta gtatctgagt gaaataaatc gttatggcat ctggcacaac
    11401 gataaattcc tacccgatgt tcattcaaaa attttccggt aaacggacgt tccgtaccgt
    11461 ggttgattaa aatatcaact tgttgttctg tcagggcgtg aataggttta atcatcagca
    11521 attctcctaa gatagtagcg aagtcattgt agcttttttt gacctgaaaa tcgttataaa
    11581 tttcaaaatt tgacatagat cacaaaaaat ttatctgtta tattggaagg gttcttttgg
    11641 cttgtcagga aagtgaaaag atgtgctata attcaagcat ctttagtgta gtacataaag
    11701 aacaaatttt gtttaacttt aatataggta gaaaaatcta tggcaattaa aattggtatt
    11761 aacggctttg gccgtatcgg tcgtatcgtt ttccgtgcag cacaacaccg tgatgacatc
    11821 gaagtggtag gtatcaacga cttaatcgat gttgattata tggcttatat gctgaaatat
    11881 gattcaactc acggtcgttt tgacggtact gttgaagtta aagacggtca attagtagtt
    11941 aacggtaaag cgatccgcgt aacagctgag cgtgacccag ctaacttaaa atggaatgag
    12001 atcggtgttg atatcgcagt tgaagcaaca ggtttattct tagatgatga aactgctcgc
    12061 aaacacatca ccgcaggtgc gaagaaagtt gttttaaccg gtccgtctaa agatgcaaca
    12121 cctatgttcg taaacggtgt aaacttcgat acttatgcag gtcaagacat cgtatccaac
    12181 gcttcttgta caacgaactg tttagcacca ttagctaaag ttattcacga aaaattcggc
    12241 attaaagaag gtttaatgac aactgttcac gcaactactg caacgcaaaa aacagtagat
    12301 ggtccatcag cgaaagactg gcgtggtggt cgtggcgcat cacaaaatat cattccttca
    12361 tcaacaggtg cagcgaaagc agtaggtaaa gtattacctg cattaaacgg caaattaacc
    12421 ggtatggctt tccgtgttcc aaccactaac gtttctgttg ttgatttaac tgtaaactta
    12481 gaaaaaccag caacttatgc agaaatctgt gctgaaatca aacgtgcttc agaaaacgaa
    12541 atgaaaggcg tattaggcta cacagaagat gcagttgttt caacagactt caatggtgca
    12601 actgaaactt cagtatttga tgcagcagca ggtatcgcat taactgatac tttcgttaaa
    12661 ttagtatctt ggtacgataa cgaagttggc tactcaaaca aagtattaga cttagttgct
    12721 cacgtatata actacaaagg ttaattgcta agttatattt taaatataga gccaaattct
    12781 gaacggaatt tggctctttt gctgcgaaca ataaattgaa tatagtcgcg ttttcccata
    12841 aaatcaattt cctacaaaca ggaactaagc acagtaa
//
LOCUS       DANLUT010000059        12856 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLUT010000059 DANLUT010000000
VERSION     DANLUT010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12856
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..893)
                     /locus_tag="PXB38_001298"
     CDS             complement(<1..893)
                     /locus_tag="PXB38_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL5353625.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDPNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGEAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFI"
     gene            complement(890..1609)
                     /gene="nfsA"
                     /locus_tag="PXB38_001299"
     CDS             complement(890..1609)
                     /gene="nfsA"
                     /locus_tag="PXB38_001299"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL5353626.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQTLIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGIFAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(1621..2406)
                     /gene="mtgA"
                     /locus_tag="PXB38_001300"
     CDS             complement(1621..2406)
                     /gene="mtgA"
                     /locus_tag="PXB38_001300"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL5353627.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(2381..2701)
                     /gene="trpR"
                     /locus_tag="PXB38_001301"
     CDS             complement(2381..2701)
                     /gene="trpR"
                     /locus_tag="PXB38_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL5353628.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWVNGKVNGTV
                     NGKA"
     gene            complement(2781..3422)
                     /gene="lolA"
                     /locus_tag="PXB38_001302"
     CDS             complement(2781..3422)
                     /gene="lolA"
                     /locus_tag="PXB38_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL5353629.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSSDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(3533..6391)
                     /gene="polA"
                     /locus_tag="PXB38_001303"
     CDS             complement(3533..6391)
                     /gene="polA"
                     /locus_tag="PXB38_001303"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL5353630.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDTKGKTFRYELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIGLQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
     gene            complement(6514..7920)
                     /locus_tag="PXB38_001304"
     CDS             complement(6514..7920)
                     /locus_tag="PXB38_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL5353631.1"
                     /translation="MKLTKIALSVVAVISAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFSSNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMDEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELPED
                     ELQMALFMIVMGAGSLGQ"
     gene            complement(7970..8776)
                     /gene="trpA"
                     /locus_tag="PXB38_001305"
     CDS             complement(7970..8776)
                     /gene="trpA"
                     /locus_tag="PXB38_001305"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL5353632.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPIAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQTGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLSNQANLLKELAEFVQVMKAATK"
     gene            complement(8778..9968)
                     /gene="trpB"
                     /locus_tag="PXB38_001306"
     CDS             complement(8778..9968)
                     /gene="trpB"
                     /locus_tag="PXB38_001306"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL5353633.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            complement(9980..10732)
                     /locus_tag="PXB38_001307"
     CDS             complement(9980..10732)
                     /locus_tag="PXB38_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5353634.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERNSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            complement(10958..12490)
                     /locus_tag="PXB38_001308"
     CDS             complement(10958..12490)
                     /locus_tag="PXB38_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL5353635.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIVGYLVVGFTQSAVLGFIATAIVMAILILLFKEK
                     KH"
BASE COUNT         3700 a         2926 c         2327 g         3903 t
ORIGIN      
        1 ttgataaaat aagaaaccat ttcagaagct atatcaacat catttactct ctctatgcct
       61 tcaaatcctg ggctggcatt gacttctaaa ataactacgc ctttctctgt ccgcagaaaa
      121 tcaacgcctg caatatcaag ccctatcgtt ttagttgctt taattgctaa cgcacgttcc
      181 atctgagtta attcaatcgg ttgagccgtt ccaccttgat gaatattggc tctaaaatca
      241 cctgttacgc tggttcggct catggcagca accacttcat tgccaatcac aaacgcccga
      301 atatcttgcc ctttagcttc gcccacaaat tgttggcata gataaggctc atttacttgc
      361 ctaaaggtcg ctaacacggc ctcggcatta tttttgcctt caaatagcat tacgccattc
      421 ccctgtgaac catttagcac ttttgaaata agtggaaaag caaattgatt gagttgtgat
      481 ttcacagaaa ccaaatgccc tgcaaaattc gtattaggaa ccggcaaatt gtgtttggct
      541 aatttttgta atgttcgcca tttgtctcgg gctaacgcaa atgccgctga atgatttaga
      601 acaggaatac ctttcgcctc aaaatggcgt aacaccgaac agcccatttc ggtactgcct
      661 gtgccaaaac ggggtaaaat gccgtcataa ttcggcaaca ataccggctc cggacggttg
      721 ttatcatagc tctcgccagc ttgatagtag atcttaaatt cgccattttc taatccgagt
      781 agcattcgat tcgggtctaa aatatccagc tcaatcccct ttgcctcaca agcggctttt
      841 attcgacagc agctatataa acgaggctct cgacatagca ttagccactt cattttttca
      901 gcaatccttt ctgattgaaa aacggcaaaa tatgcggacg aacaggctta tccaatgttt
      961 tatgaatagc tgcttgccat tgttgtggct cgccgattct ggcttggtag taagcggtca
     1021 aattttcatt atattttgca aattcagtcc aatcaaaatc ctgatattga ttgttataac
     1081 aaaccaaact attcggcaaa cgaggtttta ttgccggctc ttgtgccgga taccccaaac
     1141 acatacccac cagtggaaca caatattccg gcaagttaag ggctttagaa acccgctcaa
     1201 tatcattacg caatgctcca atatacaccg ctcccagccc tagtgattcg gcggctaaaa
     1261 atacattctg ggcaaaaata ccggtatcta ccgccccaat caacgacacc tccgcccatt
     1321 ccaactgcga ttcagggaca agttgtttgt gtttattaaa atcaatgcag aacaccaaaa
     1381 attcagcaca atctactaca tattgcatac ctgaaacggc ttttaatgtt tctcgaatct
     1441 gccgatcggt tacacgaatc accgtcacac attgcagatg atttgaactt gaagccgctt
     1501 tacctgcctc aattaaggtt tggaaaatct cttcagaaat aggctgttcg gtaaatttac
     1561 gaatagaacg gtgagataaa atcgtctcaa gagtcggttt actttgcata tttttctcgt
     1621 ctaaagttta tctaaataat ttttgccatc aagcaaactt acttgtcgca taatccacgc
     1681 ttggcgtttt cgcatactcg ggccgggttt atctacccta aacaccaacg ggttaggcaa
     1741 agaggctgcc aatagtgcgg attcttgcaa ggttagctgt ttggctgatt ttttgaaaaa
     1801 atgctttgcg gctgcttcca ccccgaaaat gccgttacca aattccgcaa tattgaggta
     1861 cacctctaaa atccgatcct tactccacac attttcgact aacagggtta aaggcacttc
     1921 aatccctttg cgtaaccagc tttgcccgtg ccacaaaaac atatttttta ccgtttgttg
     1981 cgaaatggtt gaacctccac gcactttttt ggatttagca ttcagtttca aggcagtttc
     2041 tatcgcttgt aagtcaatgc caaaatggct ttcaaacttt tgatcttctg aggcaatcac
     2101 agccatttgc atttgccacg aaatctcatt caggctcacc cattcttttt tgatcgggta
     2161 agatttcccc tgaaccagat tctccacctt tttttgcacc atatacgcag aataaggcac
     2221 cggtaacacc gaaaaaatca gtatcggaat caggaaaaat gtgccaccaa aggttaataa
     2281 gcgactagaa ccaaaccaaa gccagcccag tttacttttt attttgcgag gaataaaaaa
     2341 aagccctatt ttcttcaaaa gagagcttaa aaatcgcttg ttacgctttg ccattgactg
     2401 ttccattaac cttgccgttc acccattgca gaaaatcttg gtcgagtgtt ttaagcatat
     2461 ttgaaccacg agtgatggtt gccgcactgg tatttaaatt ttgttggatt tcccgttgcg
     2521 aatcttcacc ttttagcaaa gcttgcacaa tttgtaaacg caagcctaat gaacctcgct
     2581 catcggcggt gagaaacatt gagaaaaacg gctcaagttt atcttccgca accgcttgtt
     2641 caagcagagc caaaaactgc gtccactcgt ttggatctcg ctggttatag agtgttttca
     2701 tactgtccct tgaagtaaaa acggtgacaa gcggtcagat ttttacaaaa ttttgcagaa
     2761 aaacgaccgc ttgctctcca ttattttttc gattttttac cgccacgttg gtcgtctaac
     2821 tctgcccctt tcggtacgct gaatttaaac aaatcgcttg agacaccgcc ggtagtaata
     2881 ttgcgtaaca catataagtt actttgcccg tcacgctcaa tggtgctgaa accttttaat
     2941 aaaccgcttt ggtcaatccg cacatcaaac tgttttaaat tgcttttttt cgattttggc
     3001 ttaagcacga aagtatcagc actctggctg acatcatatt gatcccagtg gcttttatca
     3061 ctgctggtta ataagacgaa tggcgtatta ttaactgcat cttgcacggt atttaccgta
     3121 acttgtgaaa cgaaaggatc gtaaaaccat aaatctttgc cgtcagatac aatcaaattt
     3181 tcttgtggtg atttggtatc cattctaaat aagttcgggc gttttacttg gaatttgcct
     3241 ttgccttgct gaatttgttt acctttgcta gaacgcacgg tttggtcgaa atccgcacta
     3301 tattggctta cttgttccaa acggcgttgt aattctgcaa cagattgagc atcagccaat
     3361 gccacatttg ccaagccaaa taacgctaaa ccgaataccg attttttaaa taatgttttc
     3421 atttgttttc ctttttacca acaagaattt tcttgtttga caataaaatc atcaaaagtt
     3481 tcatattaat gaactgttac aacaatacaa taaaagtcgt gaattgtata gtttaatgag
     3541 cttcgtccca gttttcgcct acgccaactt cggcaatcag tggcactttg aggctaatcg
     3601 ctttttccat ttcggttttg attaattggc tgtaatggtc gattttatcg gctttgactt
     3661 caaacaccaa ttcatcgtga acctgcataa tcattttgat ttcatcatta tcacgaatcg
     3721 cattatcaat accaatcatc gccaccttaa taatatcggc agccgtgcct tgcattgggg
     3781 cgttgattgc cacccgttct gctgctttac gcaaaatagc attgccggat ttaatatcag
     3841 gcaagtacaa acggcgacca aatagggttt caacatagcc tttttcaact gcaacttcac
     3901 gaatatcggt cataaattgt tgaaccgccg ggtaacgttg gaagtagaga tccatatatt
     3961 tttgagcctc tgcacgccca atccctaatt ggtttgaaag cccaaatgac gacattccgt
     4021 aaatcagccc gaagttaatt gctttcgcac tgcggcgttg ttcggaggtg acttcaccta
     4081 actccacccc gaaaatttcg gcagcggtag cacggtgaat atctttgccc tccgcaaagg
     4141 cgttaatcat tccctcatca ttcgataaat gagccataat ccgtagctca atttgtgaat
     4201 agtcggcagc gacaatttta taaccttctc tcgcgacaaa agcttggcga atccgtctgc
     4261 cctcttcatt gcggatcgga atgttctgca aattcggatc gctggaagaa aggcgtccgg
     4321 ttgcggtgac tgcttgattg taagaggtat gcacccgccc tgtttttttg ttaatcagtt
     4381 gtggtaattt atcggtgtag gtagatttca acttacttaa cccacgatgc tccattaata
     4441 acttcggcac taaatgccct tgttgagcca actcgtctaa cacttcttcg ttggttgagg
     4501 gtgcaccttt tggggttttc ttcaacaccg gcaagcctaa tttttcaaac aaaatctctt
     4561 gtaattgttt agttgaggca agattgaagg tttgccctgc ttctgcgtgt actaatgttt
     4621 caacttcctc caaacgtttt tcaatttcag ccgattgggt caataatttt ttcgggtcaa
     4681 tcaacacgcc attgcgttca attcgagaaa gtacgcccac aagtggcatt tcaatttcat
     4741 cgaataactt caccaattca ggctcttgct gtagtttttc ccacaatact tggtggagtt
     4801 tcatcgtcac atcggcatct tctgccgcat attcagccgc ttttgctatc tcgattttat
     4861 cgaaggtcag ttgatttttc cccttaccag caagctcttc aaacggaatc gttttatgcc
     4921 ccaaataacg ggcggctaaa tcgtccatat tatgacgacc ggtgctgttt tgggtgtaag
     4981 attcaatcat cgtatcaaaa gcaacacctt gtagcccaat gccgtagttc gcaaaaatgg
     5041 ttaaatcata tttaatattc tgcccgatct ttttaatctc cgggttaagc aaaatcggct
     5101 tgagtttact taaacaagcg gtcaaattta gctgattttt taccaattca tcggaagacg
     5161 ggctttctga acgctcctca tcaccgaaca tatcggcttg ttgcggttgg gctttttgct
     5221 tatgcccaag cggaatatag cacgcctcgc cattttccag tgcaaaggaa ataccgacca
     5281 aattagccga cattgcgtca aggctgtcgg tttcggtatc caccgcaatc aaacgagctg
     5341 cggtgagttt ttcgatccag gctgataatt tctgttcagt atcaacggtc tcatatttgc
     5401 tacgatcgat ctcgaccaca tttgcaacat tttcctcatt tctgaccgct tgtgttactt
     5461 ggtaattatt cggtactttt tcagccgaag tttgagtgac cggattggca ttttgattca
     5521 cttcgttcag ccagcgttta aattcataat gctcaaataa ttgagcaagc tcagcacggt
     5581 cttgcggctg tgttaaaagt tgatcgtgag taacatcaag ttccacatcg gttttgatgg
     5641 tagcaagcaa ataggataaa tcggcattcg ctttttccgc ttccaatttt ggggcgaaat
     5701 tttttgcccc acggaaagaa agggtggcaa tttgatccaa attagcataa atctgttcaa
     5761 gtgaaccaat gccttgcaat aaagctaatg cggtcttttc ccccacacct tttacgcccg
     5821 gaatgttatc ggcggaatcg cccattaatg ccagaaagtc gataatcaac tcaggcggaa
     5881 tgccatattt ttcaatcacg ccttcacgat ctaacaaagt attgttcatc gtgttaatca
     5941 acataatgtg atcgttcacc aattgtgcca tatctttatc gccggtgctg atcaacacat
     6001 ctttgccgtc tttagcggct tgcacagcaa gcgtgccgat cacatcatca gcttccacac
     6061 cttcaatcga aatcagtgga atgcctaagg ctttgataat gcgatgcaaa ggctcaattt
     6121 gagggcgtaa atcatcgggc attggtgggc ggtgcgattt atattgctta aacaactcat
     6181 aacggaaggt tttccctttg gtatcaaaca ccacagcaat atggcttgga ttcacttgtg
     6241 aaatcaggct ttttaacata ttcagcacgc catacattgc ccctgtcggt tcgcctaagc
     6301 gattagtgag cggagggaaa gcgtgaaatg ctcgatataa ataggaagaa ccatccacca
     6361 ataccagtgg attttttgcg atagttgcca taaaaatctc tttataatca aataaatatt
     6421 ggcgttatta tacaagaata ggcgaaaaat aggataaaaa aagcgtattt ctgctattgc
     6481 aaaaatacgc ttcattttac tgggaaatta tgattattgc ccgagtgagc ctgctcccat
     6541 cacaatcata aacagagcca tttgaagttc atcttcgggc agttcacgtc cgtttaaatt
     6601 cacttttccg ttatctatag ttaattcaat cttcacattg ttgtcatcta cttttcttaa
     6661 tccgtactgt tcaactcccg cattgagaaa aacagcatca acttgttgct tggcaaatgc
     6721 tttcgcttct tcttcgccta atttttctgt aactattgag acttggcgaa taatatcttc
     6781 cgcatattga cggttgatat ttgaagtgaa tttacttgtt gaaagggctt gcaataccgc
     6841 ttgcatatta ccaagatttt gtgggtcaaa ttgagccata ttcagtaata aagccaaatc
     6901 aactttgcct ttgctgtttt caagtgagaa attattaata tggaatttaa atgattttgc
     6961 taatagttgt aataataact cgcctgtttt ttcattttct aatgtttgag gattagataa
     7021 taaaggcgta atatcattgg ttaatttagc atctaaatcg tatgccatat ccatttttaa
     7081 tttacccatt tcaacaccct caatgttgaa agtggctgcc tctaaatctc cggtagaaat
     7141 taaacgatcg ccttttaata gattatcgcc cttcaccaca acatctttaa tttgagataa
     7201 tttgccatct ttagacttaa actcaatagc gttaattttt ccactacctt tgcctaaagt
     7261 taaattagga taactttcat tattttctgt ttgaacatca taaactatac cttgaatttg
     7321 aaaatcaaat tcttctgctt ttatcttaag actttctagc tcaacagtgc tatcaacccc
     7381 ttttaatttt tggtcgtagc tatattgcac tttgattggc gtggtttcaa tatgacctgt
     7441 ttcatcacta tgtttaatcg gggaaatatc aaaatgccct tccacatcgc ccgaatagct
     7501 gatattagaa aaaccggtgc caatatgttc atccatcaat tttttaaggg cttcaggagc
     7561 ttgtaatttg ctttccgcac tcatcattac aggagctaaa ttaagtttcg ctaaacgatt
     7621 aagcggtagc ggaccgtgat gaagtttatc attaccaaca aagtccaatt tcttaccatt
     7681 acccaaatcc acttctaaac gatatttcgc attagagcta aagaaatggc gatcgatctg
     7741 cacatcttta agctcaatat tcgcaccaaa ttcgccactc agttgtttaa gttggttatt
     7801 agcttgaaca accaattctt gatatttttc ttcaacctgc ttacctgtgt accaacttcc
     7861 gccaactgca acagcactaa ttaccgctac aactgaaaga gcaatttttg ttaatttcat
     7921 tctgtttcct tttattttca aaaaaattta aaaaatgacc gcttgtagtt tacttagtag
     7981 ccgctttcat cacttgtaca aattcggcaa gttctttgag caaattagct tggttagata
     8041 aattacgttc aataattttc acaatcgctg agcctgaaat cgccccgtct gctccgagcc
     8101 ttaacgcctc tttcacctgt tcaggtttgg ctatgccaaa accttgtaaa ataggtgcag
     8161 ctccggtttg tttcaaactt tccactaaat tatctaaatt acttgcgtga gcttggtttt
     8221 cagcactagt tacaccggca cgggaaacta aataagtgta gccttgggtt aattgagcaa
     8281 tccgttcaat ggtgttttga tcagcattcg gcgggcaaat aaacaccggc tgaattccat
     8341 atttttcagc ggttggcaca aactcttggg cagcgaaaac aggcaaatca gcaatcaaca
     8401 ccgcatcaac tccactttgt tggcaacgtt ggaaaaatac ttctgcgatt ggcacaaaaa
     8461 ttaaattggc gcacagtagt aaaccgatag gaatgtctgg atatttagct cgaattttgg
     8521 caatcagctc aaaacagcta tcagtgctat agccaccatc taaagctcgt ttattcgctg
     8581 cttgaatcac cggcccgtct aagagggggt cagaaaacgg aaagcctagc tctaaagcat
     8641 cagccccgtt tttaatcatc gtgtcgataa tctcaaaact gcgttcaaaa ccaggatcgc
     8701 ataatgtcac aaacggcaca aaagcccctt cgttttttgc ttttaatgca gtaaatagcg
     8761 tatcaaagcg gctcatttta ctctcctcca tttaaaattt tatccacggt gaaaatgtct
     8821 ttatcgcctc gacccgataa attcaccact aataactgct ctttttcagg gttctgctta
     8881 atcattttta acgcataggc taaggcgtgg gaagattcta acgccggaat aatcccctca
     8941 tttttggcta atgcttggaa tgcctctaaa gcctctgcat cggtaatcga tacatattca
     9001 gctcgccctg tcgcatttaa ataagcgtgt tgcggcccga cagaagggaa atctaagccg
     9061 gctgaaatgg agtaagactc ttcaatttgc ccgtctttat cctgcataat cggcgatttc
     9121 ataccgaaat agatccccgt tgtgccgtgt ttgagcggtg caccgtgttc accggtttca
     9181 attccttttc ctgccggctc aacaccgatc aatttgacgg attgctcttc gataaaatct
     9241 gcaaacatac cgatagcatt tgatccaccg cctacggcag caatcaccgc atcaggcaag
     9301 cggtcttctt ttgctaaaat ttgacgtttg gtctcttcgc caatcatttt ctgaaattca
     9361 cgcaccattg tcgggaacgg gtgcgggccg gctgcagtgc cgattaggta atgggtagta
     9421 tcataatttg ccgcccaatc ccgcattgcc tcgcaacagg catctttgag cgagcaagag
     9481 cctttttgta ccggaatcac ctccgctccc attaaacgca tacggaatac atttggcgat
     9541 tggcgttcta catcttttgc gcccatatac accacgcaag gcattcctaa catcgcacac
     9601 gctaatgcgg ttgccacacc gtgctgtcct gctcctgttt cggcaataat gcgggtttta
     9661 cccattcgtt tagcgagtaa gatttgccct agcacttggt tggttttatg tgccccaccg
     9721 tgtaaaagat cttcacgttt taaatagagt ttggttttac tgcctttggt taaattacga
     9781 caaagggtta aagcagtcgg gcgaccggca tagtttttga gtaaatcggc aaattcagct
     9841 tggaatgttg ggtcttgctg agcatctaca aaggcttgtt ctaattcttt tagcaccggc
     9901 actaaaattt ccggcacata cataccacca aattcaccaa aataaggatt aagaagtgtg
     9961 tctgacataa tatttccttt taaatatttc tcgctacatt taaggcagaa gaagtttgag
    10021 ccaccggcat cacttcaacc cgattaatat taacgtgttc aggttgctga ttcagccaaa
    10081 gcacaatatt tgccacatct tccgggcgca caaactgcac gttttcataa actttagccg
    10141 ctttttcatc atcgccttta aagcgtacat ttgaaaattc cgtaccgcca catagccccg
    10201 gctcaacatt ggaaacacgc actttagtgc cggctaaatc tgcccgcaaa tttaggctaa
    10261 actgtttcac gaaggcttta gtaccaccat atacattacc acccgggtaa gggtaagtgc
    10321 cggcaatcga gccgatatta ataatatgcc cactgttccg ctccaccatt tcaggcaaaa
    10381 ctaagcgtgt catcgttacc aatcctttaa tattggtatc gatcatttga taccaatcgt
    10441 tcaaatctgc tttctgtgcc ggttctaagc cgagtgcaag gcctgcattg tttactaata
    10501 aatcaatttg ttgccacgct ttagggcggc tattcagtgc tttttccacc tcatcgggct
    10561 gttgaatatc aaatgcaagc ggtagaaatt tatcgccaaa ttgtaaatgc agttcttcta
    10621 aacgctctgc ccgtctgccc gtgccaatta ctttataacc cgattgaagc aataatttac
    10681 aaattgccaa cccaaatcca gcagttactc ctgtgactaa tgctattttc atcttttcac
    10741 cctcaaattt aaaatgtact attaaagtag tacaaaaaaa ttaaaattgc aagaaataat
    10801 attgccataa aagaaaaaag cgtaccaaaa ggtacgctaa tgctaggagg atcttatttt
    10861 aagatttata taacacaaca ttcgatatcc atatcttgag tgctatttta tctcatcaat
    10921 aaatctcatt ctgtgattcc cttcacattt tcggaaatta atgctttttt tctttaaaaa
    10981 gcaaaatgag tattgccata acaatagctg tagcaataaa tcccaatacc gctgattggg
    11041 taaagccaac cactaagtaa ccaacaatag aagctgttgc aactaataaa gcataaggta
    11101 attgagaaat gacatgatcc atatgattac attgtgcgcc tgttgaagaa agaatagtgg
    11161 tatcagatac tggagaacag tgatcaccac aaaccgcacc agccattact gcagataaac
    11221 aaggaataat taatgctgga tctgaatgca ctgccattga ggctccaatt ggcaacataa
    11281 taccaaatgt tccccagcta gttcctgttg aaaacgccat tgctgcggct aacacaaata
    11341 gaattgcagg taaaaactct gctccaatgc tttctgcaac caatcctgat agatatttcc
    11401 ctgtttgcat atcacttact acgccgttta ttgtccacgc aaagaagaga atagtgattg
    11461 caccagacat catcttcaca cctaagccat aagcacggac gtaattttta aaagaaatat
    11521 taccgcttgt aatgatacaa atagttgcaa ctataagccc tgccacacca ccaacaacta
    11581 atgaaatgcc taccgtagta ttttcaaaag cacctagtat agaaaatgaa gcacctgatt
    11641 cggccagtgc atctgcacct gttttcatca tcattgagac tgtagcaaca ataagtgcaa
    11701 taattggcaa aatcaaatcg cgcacgtgtc ctttcgtttc aatttgctca tcatctaatt
    11761 ctgctaaatg cgctgcttga cgttcaaaac gcgccatcga accaatatca aatgagaaat
    11821 atgccacaaa gaacaccata atcatcgcaa aaatggcgta aaagttcatt gcgctcattg
    11881 tcataaatgc gcctagtggc gaatagcctg tgatggaatg cgtagccaat aagccagcta
    11941 ttaaggtaat aatataagcc ccccagcttg aaattggcat taacacgcac attggagcgg
    12001 cggtagaatc taaaatataa gctaatttag cacgagaaac acggaattta tccgtaacag
    12061 ggcgggcaat cgcacctact gctaaactgt ggaaatagtc atcaataaag gtaaagaaaa
    12121 ccaaacctgc cgccattaat tttgcgcctc gtttgccttt tacctttttc tgcgcccaat
    12181 tcgcaaacgc ctgattacta cctgaaatac ttaataatga cgttaatacc cctaataaaa
    12241 gcaaaaataa aataatgtta acattatttg aatttaatcc ttcttcagcc cctttataaa
    12301 ctaaagaaac aacgctattt ttaatataag taagtgcatc aagaaaattg ctattagtaa
    12361 gcataaatgc accaaagaga ataccgatgc taagtgaaat aatcaccttg cgtgtcacaa
    12421 ttgccaatat tagcgcaatc agtgccggca ataccgacca aagtgacgta gaataatcaa
    12481 ctagattcat aaaacctcta aaatgactgt gtataatttg tataaataag aatagccaaa
    12541 caagagatct actgggatat ttataaaaat aaatatgaaa ggaaggcaaa tgtgaaatat
    12601 ctgaaaccca ccctaacagt agcactccgt agcatttact acgacagtgt cgtttctttc
    12661 gacaacgacc ccaaccaatt aagatgacgc ttaattgatt tcggcaaatt cacctttcct
    12721 tccccttcat cgttttccac tcagaagaaa tacttattga attcgcacct ctacaatttg
    12781 taggacagtg tttaagatag cacgaatatc tttagatata aagtatctat ttttttattt
    12841 atgcttattt acctaa
//
LOCUS       DANLUT010000060        12574 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLUT010000060 DANLUT010000000
VERSION     DANLUT010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12574
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            126..2402
                     /gene="gshAB"
                     /locus_tag="PXB38_001309"
     CDS             126..2402
                     /gene="gshAB"
                     /locus_tag="PXB38_001309"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL5353636.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKQKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
     gene            2724..3701
                     /gene="manX"
                     /locus_tag="PXB38_001310"
     CDS             2724..3701
                     /gene="manX"
                     /locus_tag="PXB38_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL5353637.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHAVAVDQKDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            3713..4513
                     /locus_tag="PXB38_001311"
     CDS             3713..4513
                     /locus_tag="PXB38_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL5353638.1"
                     /translation="MELSALQIVFLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            4527..5363
                     /locus_tag="PXB38_001312"
     CDS             4527..5363
                     /locus_tag="PXB38_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL5353639.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNDPGRKEAIKRHSEFFNTQPFVAAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTIRPVFAGLGAVLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTTEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGASTGA
                     LA"
     gene            5456..5941
                     /locus_tag="PXB38_001313"
     CDS             5456..5941
                     /locus_tag="PXB38_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL5353640.1"
                     /translation="MTNTILILFILLGLGFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRTPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLADVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(6028..6819)
                     /gene="tpiA"
                     /locus_tag="PXB38_001314"
     CDS             complement(6028..6819)
                     /gene="tpiA"
                     /locus_tag="PXB38_001314"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL5353641.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAKA"
     gene            6979..7998
                     /gene="truD"
                     /locus_tag="PXB38_001315"
     CDS             6979..7998
                     /gene="truD"
                     /locus_tag="PXB38_001315"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL5353642.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTSANTLFVGEKLAKFVGISEREMSYAGLKDRHAVTEQWFCLHLAGKETPDFSTFEC
                     EGVEVLEVTRHNRKIRVGSLAGNHFELLLRDVTESEELIYRLQQLQAVGFPNYFTEQR
                     FGRDGHNLTQALRWANGEISVKDRKKRSFYLSAARSEVFNLVVSQRISDGLIQKVLKN
                     DYVQLAGSNSFFCVKSDEIAETQARLTQQDLLLTAPLIGERSLELECNPAEKTIIEQH
                     AQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGLRLKFFLDSGSYATALVRELILLA
                     EQNEA"
     gene            8161..8949
                     /gene="surE"
                     /locus_tag="PXB38_001316"
     CDS             8161..8949
                     /gene="surE"
                     /locus_tag="PXB38_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL5353643.1"
                     /translation="MRILISNDDGFHAVGIQTLAKTLREAGHSVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     NQPFPQNHVLNVNVPNLPYSELKGTMITRLGARSTAAEIVKQKDPRNADVYWIGVTGD
                     PIDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            8936..9520
                     /locus_tag="PXB38_001317"
     CDS             8936..9520
                     /locus_tag="PXB38_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5353644.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            9538..10038
                     /locus_tag="PXB38_001318"
     CDS             9538..10038
                     /locus_tag="PXB38_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL5353645.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            10051..10251
                     /locus_tag="PXB38_001319"
     CDS             10051..10251
                     /locus_tag="PXB38_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353646.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            10270..11550
                     /locus_tag="PXB38_001320"
     CDS             10270..11550
                     /locus_tag="PXB38_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5353647.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATKTITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRATDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            11974..12540
                     /locus_tag="PXB38_001321"
     CDS             11974..12540
                     /locus_tag="PXB38_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL5353648.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVSAHTETSKAMPKALKKRGVVF
                     VGETTCYAFMQSMGLVNDHVNNCVFKHK"
BASE COUNT         3719 a         2588 c         2717 g         3550 t
ORIGIN      
        1 gaagcagtat ttctgttata accaaatcat ctacttcatt ccaataaact aaaacccact
       61 atttcactaa gtctttcatt tgtgttattg tgccgataca tttttttgac tacaaaggat
      121 agatgatgaa actacaaaaa cttatccgag aaaatcattt agcattgcta tttcaacaag
      181 ggaattttgg gcttgagaaa gagagccaac gggttgatcg caacggcaat atcgttacta
      241 ctccccaccc tgccgtattc ggtaatcgct cttaccaccc ttatattcaa accgattttg
      301 ccgaaagtca gctagagtta atcactcccc cgaatgctaa attagaagac agttttcgtt
      361 ggctctctgc tattcacgaa gtggtattgc gttcgttgcc agaggaggaa tatatcttcc
      421 ctctcagtat gccggcaggc ttgccgccgg aagagcaaat tcaagaagca caatttgaca
      481 accctgaaga tgtgcaatat cgccaacacc tttccaaaaa ctatgggaaa tataagcaaa
      541 tggtaagcgg cgtgcattat aattttcaac tttcaacgga atttgtcgaa aaagcctttg
      601 ctttacaaac ggaatatagc gagctgaaag ccttccaaaa cgcactttat atgaagttag
      661 ctaataactt tttgcgttat caatggattt tgctctattt attggctgcc acgcctacgg
      721 tggaatcgca atatttttat gaaaaatcac cgcttgcgag agggcaactt gtccgcagct
      781 tgcgttcaag cccttatggt tatgtgaatt cggaaaaagt ggtggttaat cacgacagct
      841 tagaaagcta tgttgaaagc cttgaagcca atgttgccaa cggattatta attgccgaaa
      901 aagaattcta ttccaatgtg cgtttacgag ggggcaaaaa agcccgtgag ctattggaaa
      961 acggtgtgaa atacgccgaa ttccgtttat ttgatttaaa ccctttcgcc ccttacggca
     1021 ttgagctgaa tgatgccaaa tttatccatt atttcttact cggtatgctt tggctggagg
     1081 aaacaagcgg tcaaaaagag gtcgaaatcg gcaaacagaa actttaccaa gtcgcacttg
     1141 aagatccaag aacagaaacc gctttccgtg ccgaaggtga agccatttta aatcaacttt
     1201 tagcgatgct tgaagaatta tctgccggtc aggaaagcct agatttggtg cgggaaaaat
     1261 tagctcaatt tgctgatcca agcaaaaccc tgaacggacg tttaattgcc gcaatagagg
     1321 aagtcggcag ttataaagca ttgggggcta aattggctca aacctataag gcacaagcct
     1381 ttgagcgttt ttatgcgtta tcggcatttg ataatatgga actttccacc caagccctgt
     1441 tttttgattt gatccaacaa gggattgagg tggaagtact ggacgaaaac gatcaattcc
     1501 tcgccctgaa atttggcgat catttggaat atgtgaaaaa cggcaatatg accagccgag
     1561 atcaatacat ttcaccgctg attatggaaa acaaagtggt gacgaaaaaa gtattggcaa
     1621 aagccggctt taacgtgccg aaaagcgttg aatttaccaa ccttgaacag gctgtggcac
     1681 attatccgct atttgaaggc aaagcggtgg tgattaagcc gaaatcgact aactatggtt
     1741 tagggattac catcttccaa caagcggtca aaaatcgaga agattttgca aaagcggttg
     1801 aaattgcgtt ccgtgaagac aaagaggtga tggtggaaga ctatttagtc ggtactgaat
     1861 accgcttctt tgtactgggc gatgaaaccc ttgcggtgtt actgcgtgta ccggcgaatg
     1921 tagtgggaga tggcattcac agtgtaaaag agctggtgga gcgtaaaaat gacgatccgc
     1981 tacgtggcga tggctctcgt agcccgttga aaaaaattgc cttaggtgaa attgagcagt
     2041 tacaacttaa agagcaaggc ttaaccgtag attccgtacc ggcgaaaggt caaacagttc
     2101 aactgcgtgc caattccaac atcagcaccg gcggcgattc gattgatatg accgaccaaa
     2161 tgcacgaaag ctatagacaa attgcagtgg gaattgctca ggcaatgggg gctaaagtgt
     2221 gtggggtgga tttgatcatt cctgatctca ccaaacctgc cgagccaaat ttaagctctt
     2281 ggggcgtcat tgaggcaaac ttcaacccaa tgatgatgat gcacattttc ccttaccaag
     2341 gcaaatcccg ccgtttaacc aaagcggtaa tcaaaatgct gtttcctgag ataggcaatt
     2401 aaattttctc tctatacctc ttttaaggag aatttactca agaattctcc ttaatttatt
     2461 tctaaagttt tactccaatt aaatttcact ttgtgcaaaa cactccaaaa gaagaatttt
     2521 tttgtataag taaaaacgat cgaaaatatc tccgttaaca aaatgttata aagaaaagac
     2581 atttagccca atttatagcc aaaaaagctt attgtctgtg atatagatca cacttttgta
     2641 attaatacat tgtgtgaaat aattatcata ttaaaatctc gccccagtaa ataaacaact
     2701 taaaaaaccg caaggagtaa caaatgagca ttgctattat catagcaacc catggtgttg
     2761 ctgcagagca acttctcaaa acaactgaga tgttgattgg tgaacaagaa gatgttgctt
     2821 acattgactt tgttcccggc gaaaatgcag aaacgattat gggcaaatat caagcattgg
     2881 ttgaaggtcc actatcacac tgtgaccaag tgctgttttt ggtggatatg tggggaggaa
     2941 gcccattcaa cgccgcaaac cgattccaag atggaaaatc gggtatggat gttgttgcgg
     3001 gtgtgaatat tcctatgtta gtgaacacct gtatggctcg tgatgatgtg gagtcgttgg
     3061 aagaattggt ggaagtcgca ttagaagccg gctcaaccgg gattcgttca cttaatcacc
     3121 aacctgaagt ggctgaggtg caaaccgcta ctcctgcaca agaaactgca gctgttcaac
     3181 agcctgaaat tgttgatgac ggacgtcgta tgaccattgc ccttgcccgt attgatgacc
     3241 gcttgattca cggtcaagtt gcgacggttt ggacaaaaga aagtaaagtc aatcgcatta
     3301 ttgtggtaaa cgaaggtgta gcaaaagata gtgtacgaac tactatgcta aaaagtgttg
     3361 ctcctcttgg cgtaacggct cacgttgttg atgtacctaa aatgattcgt gtctataaca
     3421 accctgaata tgccgatgat cgtgtaatgt tactctttac caacccaagt gatgtcttag
     3481 ccttaattga aggcggtgta ccactcaata gcattaacgt gggcggtatt tcgcataaag
     3541 aagggaaaca aatggttagc catgctgtgg cggttgatca aaaagatatt gatgccttca
     3601 aagcaattga tgcgaaaggt gttgaattag aagtacgcaa agtctcaagc gatagccgtc
     3661 agtatatgat ggatttattg aaaaaacata acttaatcta aaggaaatta ctatggaact
     3721 ttcagcatta caaattgtgt ttttattcct cgttgcctgt atctcaggta tgggctcaat
     3781 tcttgatgaa tggcaaaccc accgtccgtt aattgcctgt acgatgatag gcttagtgct
     3841 tggtgatgtg actaccggcg ttattgttgg cggctcatta gaattattag ccttaggttg
     3901 gatgaacatt ggtgccgctg ttgcaccaga tgctgcatta gcctctattg tctcaaccat
     3961 tttagtcatt gtaggtcgtc aagatatttc aaccggtatc gccatcgcta ttccgcttgc
     4021 agctgccggc caagtattaa cctatgttgt gcgtgcaatc accgtgggtt tccaacacgc
     4081 agcagataaa tcaattgaag acggtaactt aagccgttta gactggttac atcgcggtgc
     4141 tttattgctt caagcaatgc gtattgccat tccggcatta atcgtggcat taacagcagg
     4201 tacagatgcg gttcaaacaa tgttaaatgc cattcctgaa gtggttacaa ccgggctgaa
     4261 aattgccggt ggcttcattg ccgtggtagg ttatgcgatg gtaatcaata tgatgcgtgc
     4321 aggtcattta atgccgttct tcttcgctgg ctttgtaatt gcaggcttta ccgattttaa
     4381 ccttgttgcc cttggagtat taggtacggt tattgcaatg gtttatatcc atatgcaccc
     4441 taaatataac aaaagccagc aggtagtggt ggcagctgca ccaaaaaatg atttagacaa
     4501 ccgtttagac taagagggca tttaaaatga caactgaaat caaaaaagta acaaaaagcg
     4561 atttgaatgc cgttgtacgt cgttcaaact tattccaagg ttcgtggaac tttgagcgta
     4621 tgcaggctct cggttttgcg tatgcgatgg taccggttat caaacgttta tatccggatc
     4681 caaatgaccc gggtcgcaaa gaagcgatta aacgccattc tgaattcttt aacactcaac
     4741 cattcgtagc tgcaccgatt ttaggggtaa cgattgcgat ggaagaggaa cgagccaacg
     4801 gtaaagaaat cgacaatgcc gcaattaacg gtattaaagt tggtttaatg gggccgttag
     4861 ccggtgtggg tgatccaatt ttctggggaa ccattcgccc tgtatttgcc gggttagggg
     4921 cagtcttagc cttaaaaggc gagcttttag gtccaatcct gtttttcgcc ttatttaaca
     4981 tagtgcgttt agcagcacgc tattatggcg tagtgtatgg ctataaaaaa gggttagatg
     5041 ttgtgcaaga tatgagcggc ggtttattgc aaaaattaac cgaaggtgct tcaattttag
     5101 gtctgtttat tatgggggca ttggtacaaa aatggacgag cattaacgtt ccgcttgtgc
     5161 tttcaaccat tcaaaaacaa gacggtacaa ctgaagtaac aacggttcaa agcattctcg
     5221 atagcttaat gccaggctta ctcccattat tattaacctt tgcttgtatg tggttactgc
     5281 gtaatcgagt aaatgctatc tggattatcc tcggtttctt tgttatcggt atcctcggcg
     5341 cttcaaccgg tgcattagct tagttgcaaa attttctgtg aaaaagaccg cttgaacttg
     5401 aacattcaag cggtttttta tacgctttag cctaaataaa ttcacttgct taattatgac
     5461 caataccatc cttattctct ttattttact tggcttaggg ttcgccattt atgaccaagt
     5521 ttttatgcac aaactcaaag gaacaacctt actggaaatc cgtttaaaaa agcaaaaaac
     5581 aattgatact tggttattga ttggtttaat cgtcttgtca attagctatg gcgtacaaaa
     5641 tcaaatccag ccctttacac tctacctgct ggcgacgtgc attattctgt cggtctatct
     5701 cgcctttttc cgcacccctc gcttgttgtt aaaacagcac ggttttttct ttgcgaatgt
     5761 cttttttaat tacgacaaga tttatcaagt caatattgca gaaggaaaag cagacgaaaa
     5821 aattttggta attgatttac atagcggaag aaggctactt gccgatgttg aaaatgcgga
     5881 agatcttcaa ccggtagtgg atttttttgg cggttataaa aaggaaagtg agcagaaata
     5941 gtttgcaaac aaaacaacaa gcggtcattt ttccctgaaa ttttgcaaaa aaccgaggaa
     6001 agatgaccgc ttgtaaaatc ggttagatta ggctttagca gccgctgccg ctttaacaat
     6061 caccgcaaat gcaggcgctt taagtgaagc accacctact aatgcaccat caatatccgg
     6121 ttgagtgaat aactctgctg cattggcatc gtttacagag ccaccgtatt gaatgatcac
     6181 ttggtcagcc actgcttgtg atttagctgc aatatggtca cgaataaatt tatgtactgc
     6241 ttgtgcttgt gccggagtgg ctgatttgcc ggtaccgatt gcccaaattg gttcgtaagc
     6301 aataactgca ccgttgaatg cttccacacc gtgtgcgttg atgaccgcat caatttgtct
     6361 tgcacacact tcttcggttt tacctgcttc attttcggct tcagattcac cgatacataa
     6421 tacaggcact aagccggcat cttttaatac tttgaatttt tgagcaataa attcatcgct
     6481 ttctttgtgg taagtacggc gttctgaatg cccgataata atatatttcg ccccaaactc
     6541 ttttaacatt tcaggtgaaa tatcaccggt gaatgcccct tttacgttca catccacgtt
     6601 ttgtgaacca agtgcgatta agcctttgtc gctacaacca cagccacaac cggcaagtga
     6661 tgcttcagcg tgtgccaaat acatcaccgg tggagcgatt gctacatcac agccttcaac
     6721 gccgtgtaat tctgctttta aatctgcaat cagggttttg gtaaaggctt tatcaccgtt
     6781 taatttccag ttacccatta caagtggacg acgtgccatt ttgtttctcc tatatgaagt
     6841 tgaacttaaa tctaacatca agcactatac caaattttgt agccgttttg tgctttttat
     6901 tttgcttttt atgatctaga tcgaaaggtt taacgtataa tttctcaatc ttacgtatat
     6961 ccttaatatg agaacctgat gaaactgaat tatttatact ctcctcctca agctgttggg
     7021 cgactaaaag ccgaatatgc agactttatt gtgcgtgaag aactgggcta cgaactagcc
     7081 ggcgaagggg aatttgtggc ggttaaaatc cgcaaaacca gcgccaacac gctgtttgtg
     7141 ggggaaaagt tagccaaatt tgtcggcatt tccgagcgtg aaatgagtta tgcgggctta
     7201 aaagaccgcc acgctgtgac tgagcagtgg ttctgcttgc atttagcagg caaagaaacg
     7261 cccgatttct ccacctttga atgcgaaggc gtggaagtgc tggaagtgac ccgccacaac
     7321 cgcaaaattc gggttggctc tttagccggc aatcattttg aattattact gcgtgatgtc
     7381 acagaaagcg aagagttgat ttaccgtttg caacagttac aagcggtcgg atttcccaat
     7441 tattttaccg aacaacgctt tgggagagac ggacataacc tgactcaagc cctgcgttgg
     7501 gcaaatgggg aaattagcgt gaaagatcgc aaaaaacgta gtttctacct ttctgctgcc
     7561 cgctcggaag tgtttaattt agtggtttca cagcggatta gtgacggctt aatccaaaaa
     7621 gtattaaaaa atgattacgt tcaacttgcc ggctctaaca gctttttctg cgtgaaatcg
     7681 gacgaaattg ccgagactca agcccgttta acacagcaag atctacttct caccgccccg
     7741 ttgataggcg aaagatcgct tgaattagaa tgcaatcctg ctgaaaaaac tatcatcgaa
     7801 caacacgctc aactggttgc attaatgcaa aaagagcgta tggcagccgc tcgccgagct
     7861 atgctttgta agccacaaaa tcttgaatgg caatttgaac aagagggttt acgtttaaaa
     7921 ttctttttag attcaggcag ttatgccact gcactggtgc gagagttaat tctacttgcc
     7981 gaacagaacg aagcctaagc actcacaagc ggtaagattt aaatgatttt ttgcaatttg
     8041 taaaactttg gtaaaatctt accgcttttt acactttaga ctaaaaaaac tgtcgaaaaa
     8101 ttgttagaat tgcgatcttt gtatttagac tctatcaaga tgtaagatct aaaggaaatt
     8161 atgcgaattt taattagtaa tgacgatggt tttcacgctg tcggcattca aaccttagcc
     8221 aaaaccttgc gtgaagccgg acatagcgtg accattatcg caccggatcg taaccgcagt
     8281 gcagcttcaa gttgcttaac cttagttgat ccgctacgag tgcatcgttt tgatgaatat
     8341 aattatgcag tgatcgccgg cacgcctgcc gattgcgtac atttagcctt aaacggctta
     8401 tttgacggca aatttgcgga aaaatttgat ttagtggtct ccggcattaa tcacggagcc
     8461 aatttaggcg atgatgtagt ttactccggc acggtagcgg cagcgttaga aggtcgccac
     8521 ttaccgttac cgagtattgc agtatcactg gttgggcgta aacattcttc gtttttagac
     8581 ggtgaaaatc attttggaac ggcagcacag gtagtgttag atttattgga aaaaatggaa
     8641 aaccagccat tcccacaaaa ccacgtccta aacgtgaatg tgccgaattt accttattca
     8701 gagctaaaag gcacaatgat cacccgcttg ggtgctcgtt caactgcagc ggaaattgtg
     8761 aagcaaaaag atcctcgcaa tgccgatgtt tactggattg gcgtcaccgg tgatccgatt
     8821 gatgaaagtt ttggcaccga tttttatgca ttaaaccgag actgtgtctc tattaccccg
     8881 attcaggtgg atatgaccgc tcataaaacg atagcaacct taaaaggcat ttttaatgaa
     8941 actgtttgaa acaatttatg acaaaacaat gcagtggtct aagcaccgtt tcgctgcttt
     9001 ttggttgagt tttgtcagtt ttattgaagc gatctttttc ccgattccgc cggatgtgat
     9061 gttgattccg atgtcgatgg caaaaccgca aaatgcgttt aaatatgcag tttacactac
     9121 ccttgcttcg gttgccggtg gtgttatcgg ctattttatc ggcctatatg ctaccgattg
     9181 ggtgcaaggc gtcatcgcaa attggggaat gcaagcaaac tttgataaag cgaaattatg
     9241 gtttgaaact tggggggttg cggtagtatt tttagccggt ttttcgccga ttccctataa
     9301 ggtatttacc atctgtgccg gtgtaatgca gatggcgttc ttcccgtttg tgattactgc
     9361 tgcgatttct cgctttgccc gttttatttt ggtagcaaaa ctctctgctt ggggtggcaa
     9421 aaaatatgaa caaaaaattc gccgctcaat tgaattaatt ggttggggaa caatcgtttt
     9481 agccgttgtt gcctatataa tttatacatt aatgaaataa attttaagga tataaaaatg
     9541 aaaaaatcac tttttgtttt atctctgatt tcttttgctt tagtgggttg ttcaagcaat
     9601 tcgggtgaat ccacttctgc ggtagaaaca acagaagcaa atgcaacttg gcaatcagca
     9661 gatagcattc aaactgcacc aatgcctgcc tcgatgaatc aacctattgc cactcagcca
     9721 acctatcagc agccgactta ctctgcacca caaccaattt cggcagcacc agcaccaatg
     9781 cctgtttcaa gtggtagtga tagctctcaa gttgaaacag tagggaactg ccaagtggtg
     9841 cgtgatgcga ataatgctcc tatctattca caaattacca aaggctgcta cacagaaagt
     9901 cactatacgg taggtaaaag tgatacgctt tatttaatcg gttatctaac cggcaccaat
     9961 gccaatcaaa ttgcgcagct aaatggttta aataccggct ctccactgaa agtcgggcaa
    10021 gtcttacgtg ttcgttaata ggcagagaaa atgaacagaa cccttttagc atttgcaatt
    10081 tcttgtgcat ttttgaccgc ttgtagctcg cctactcagc cacaagttga agatccaaat
    10141 atgttacctg caggcacatt acaaccgatt gaaggctcag gcgcaagcca agacagttac
    10201 agttggccgt ctgatattca atcaacgtca atgcctgaca gtatgaaata attttaggac
    10261 aatcatttaa tgaaaaaaca atttattctt ctccctttag tctctgctgt tttggcagcc
    10321 tgttcttcaa acaatccagc accggtggtg aatgcttccg gtaataacga attaagcccg
    10381 ggcgtgatgc agcctgttga tgtgagtgca ggtgcaatta attcaagcgg tggctggcag
    10441 tctgatattc aatctgcacc aatgccaagc tcgatgaata ccactccggt gcaaacaatg
    10501 ccccagccgg tttcagtgcc acaacctgtg gcgactgtac cgcagccaat taccaatccg
    10561 gtgattaccg aacaaccacc acagccgaca accacgacca aaatcgtgaa aaaaacgaaa
    10621 acggtcgaga aaaaagtgga tcaaaatttt gagatcccgc gtgatgccaa caatgcccca
    10681 atgtacaacc aaattcaaaa agggttctac gatggctcta cctataccgt acgcaaaggc
    10741 gacacaatgt ttttgattgc ctatattgtg ggtaaagatg taaaagaaat cgccgctctt
    10801 aataatatga gcgaacctta ccaattaagc gtagggcaaa aactcaaaac cggcaaatct
    10861 gcaacgaaaa ctattaccgt ggaagaaaaa gtcaccgtac cggttgaacc acaaattacc
    10921 taccaacaag gtgcaaacgg cacaacctat gcttctggcg gtaatattac tgggccggta
    10981 aaagcaggca cagccaacgc tgatgtcacg ccggttaata acggtattaa agcaacaact
    11041 gcaactgctc cggcagtaac tgcttctgtc ggtacagtaa atgcaacaga ggaccgtacc
    11101 gcctccacca ttcgtgccac agatggcaca gcaagtggtg ccgtacaaag tagtaatact
    11161 gtttctgcac cagcttcatc aattaaatgg caatggccaa ccagcgggcg tgtaatttca
    11221 ggcttctcct cagcagaagg aggtaataaa ggcattgata ttgccggcaa taaaggacaa
    11281 gatgtacgtg ctgccgccgc aggtaaagtg gtatatgccg gtaatgcctt gcagggttac
    11341 ggtaacttaa tcatcatcaa acataccgat gatttcttaa gtgcttatgc acacaacaat
    11401 actattgaag ttgatgagca agaaacggtg aaagccggtc agaaaatcgc gactttaggt
    11461 agtacaggaa ccaatacgaa taaattacat tttgaaattc gttacaaagg aaaatctgtc
    11521 gatccggctc gttatttacc aagaaaataa gagtaacttt ttagcataat ccgaccgctt
    11581 gtgtactaca agcggtcaat ttttaggaaa attatgcaaa tgaaaaaata tatcgcacac
    11641 atgataagtt cgttactgct gatagcttgt tcggactacc gagcaacacc aactagccca
    11701 agcgatgctt acacttgctc tccttctttt cgctactctt tcttaaaaaa acgtgcatac
    11761 ctttattcag tatagccgac attcaattat tggatccaac cgagccttca catcgcattt
    11821 atattttgtt atctgaagat cgatttcaag ccgaagtctt ctcaacgaag ctctctgaat
    11881 cttctatgtt attggaggcg gttaaaggag gctatatttc aaaagacgga aaagttcgtt
    11941 tactcaaaaa agctgaaggt tggaaaattt actatgagtg agactaaaat acgttgtgat
    12001 tggtgtaaaa gcagtgaaat ttatatgaaa tatcacgacg aagaatgggg aaaaccggag
    12061 tttgacagcc tcaaactgtt tgagaaaatc tgccttgaag ggcaacaagc cggactttct
    12121 tggattacgg tgttgaaaaa acgggaagcc taccgccaag cattccatca gtttaatcct
    12181 gaaaaaattg ccaaaatggg tgaagaagaa attgatttgt taatgcaaaa cactagctta
    12241 atccaccacc gagcaaagtt agaagccatt ataaaaaatg cgaaagctta tatcacaatg
    12301 cagcaaaatg gcgaagactt cagtcggttt atttggtctt ttgtgaatta tcagccgcaa
    12361 attaatgatg taccaacact tgaagctgtt tctgctcata cagaaacctc aaaagcaatg
    12421 ccaaaagcgt tgaaaaaacg tggggttgtg tttgtaggcg agactacttg ctatgctttt
    12481 atgcagtcaa tggggctggt taatgaccat gtgaataatt gcgtgttcaa acataaataa
    12541 acacaaaaaa ttaggcgacc atttggtcgc ctaa
//
LOCUS       DANLUT010000061        12396 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLUT010000061 DANLUT010000000
VERSION     DANLUT010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12396
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..171)
                     /locus_tag="PXB38_001322"
     CDS             complement(<1..171)
                     /locus_tag="PXB38_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5353649.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEIFNMD"
     gene            306..488
                     /locus_tag="PXB38_001323"
     CDS             306..488
                     /locus_tag="PXB38_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353650.1"
                     /translation="MNNQYNPLYGMLGILASAASVILPLYAAYKDYQFGENMLSLMDI
                     IIFPLGIVRGLMYLFG"
     gene            492..821
                     /locus_tag="PXB38_001324"
     CDS             492..821
                     /locus_tag="PXB38_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353651.1"
                     /translation="MKKYLFFAFMTLSNVAYSNLDEWYSASDKERREFIAKHFAEEIV
                     RSDRNTPYDYAMCTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQ
                     NCAKYIQ"
     gene            complement(857..1609)
                     /locus_tag="PXB38_001325"
     CDS             complement(857..1609)
                     /locus_tag="PXB38_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5353652.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1648..2895)
                     /gene="clpX"
                     /locus_tag="PXB38_001326"
     CDS             complement(1648..2895)
                     /gene="clpX"
                     /locus_tag="PXB38_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL5353653.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQTTNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2895..3488)
                     /gene="clpP"
                     /locus_tag="PXB38_001327"
     CDS             complement(2895..3488)
                     /gene="clpP"
                     /locus_tag="PXB38_001327"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL5353654.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTHRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3600..3983
                     /locus_tag="PXB38_001328"
     CDS             3600..3983
                     /locus_tag="PXB38_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL5353655.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(4087..4163)
                     /locus_tag="PXB38_001329"
     tRNA            complement(4087..4163)
                     /locus_tag="PXB38_001329"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4127..4129),aa:Asp,seq:gtc)
     gene            complement(4252..5007)
                     /locus_tag="PXB38_001330"
     CDS             complement(4252..5007)
                     /locus_tag="PXB38_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5353656.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLADQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(5067..6062)
                     /gene="trpD"
                     /locus_tag="PXB38_001331"
     CDS             complement(5067..6062)
                     /gene="trpD"
                     /locus_tag="PXB38_001331"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL5353657.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVH
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKATAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(6080..6466)
                     /locus_tag="PXB38_001332"
     CDS             complement(6080..6466)
                     /locus_tag="PXB38_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL5353658.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQVHR"
     gene            complement(6459..7049)
                     /locus_tag="PXB38_001333"
     CDS             complement(6459..7049)
                     /locus_tag="PXB38_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL5353659.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMPVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(7059..8615)
                     /gene="trpE"
                     /locus_tag="PXB38_001334"
     CDS             complement(7059..8615)
                     /gene="trpE"
                     /locus_tag="PXB38_001334"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL5353660.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVTNFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8757..9374
                     /locus_tag="PXB38_001335"
     CDS             8757..9374
                     /locus_tag="PXB38_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL5353661.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTPFN"
     gene            9520..10587
                     /gene="rluB"
                     /locus_tag="PXB38_001336"
     CDS             9520..10587
                     /gene="rluB"
                     /locus_tag="PXB38_001336"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL5353662.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRATVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10652..>12396
                     /locus_tag="PXB38_001337"
     CDS             10652..>12396
                     /locus_tag="PXB38_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL5353663.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDAVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIVAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVL"
BASE COUNT         3461 a         2439 c         2710 g         3786 t
ORIGIN      
        1 atccatatta aatatttctg cgatttgttc tattttcggt aaattagaga tagtttcacc
       61 acgttctatt tttgcataac ctttggttgt catacttaat ttttgagcca tttcatcttg
      121 tgtccaatga ttattttctc gcagtaattt gattttttcg tgtactttca tataacacct
      181 atagattgtg ggagttggga tataacttga tgtggtaaag gataaatttt gtggattgta
      241 gcagtttatt gagcaattta gaatagagta aattttatct taagctcaca ggagaagaaa
      301 cattcatgaa taatcaatat aatccattat atggaatgct aggtatttta gcgtcagctg
      361 catcagtaat tttgcctctt tatgcagcat ataaagacta tcaatttggg gagaatatgt
      421 tatctcttat ggatataatt attttcccgt taggtattgt tcgtggactt atgtatttat
      481 ttggatagat tatgaaaaaa tatttatttt ttgcttttat gacattaagt aatgttgctt
      541 attctaattt agatgagtgg tactcagctt cagataaaga gcgaagagaa tttatcgcaa
      601 aacattttgc agaagaaata gtaagaagtg atagaaatac accgtatgat tatgctatgt
      661 gcactggtag aatgtttgct aaacaactga ctcgagatga agtcaaagac taccctttgg
      721 caaacactaa gccgcaatat ttaacccgtg atagacggat tgagattatg tctaatttac
      781 ctcgtgaaat attacaaaat tgtgctaaat acatacagta attttatgag taacaccact
      841 ttggaattaa gtggtgttat tttaatttta ataatgtctc taaaatcatc tccaacataa
      901 actcaataaa gccggtagaa tcattttggc tgtctgcgag agaaagcatt tgataataac
      961 gttgttgatt ttcgtaaacc attgtttcaa tcggcaacca agcgaaaagt gggttccatt
     1021 gtgctaaaag gacattttgc cataatcgac ccattctgcc gtttccatca ctaaaggggt
     1081 gaatcatttc tatttcatag tgcataaccg agcttttaat gagtgcaggt gtatcatctt
     1141 gtttagccca agagaacaac tcattaatca aattctctac gaattgagga cgagccccca
     1201 tatgcacaag ttgcccactg aaattataaa tgccgacatc ttttgaacga aaagcccctg
     1261 cgtcatttac taagtcagca gtaagaaact tatgtgcttt gagaaaatct ttaatcgagt
     1321 aaggattata gtgcatcatt tcatcgtaag cgtcataggc atttttgact tcacgaatat
     1381 ctttggggtg tccgagaacc tttttgccct taatgattgc ggtaacttgc tcaatcgtta
     1441 atgaatttgc ctcaatagct aaagaggctt gaattgatct caagcggtta ttttttctaa
     1501 gatgtaaatt acgctcaaaa tccaattgta gcgttcccaa tttatgagaa atttctacaa
     1561 ccagattcag cattttagtg gtaactgtaa aaggtggttt ataagccatt ttgcaataat
     1621 cctaaaaaat taaaccgctt gtcattgtta ctccaccttc ggcttatcgc cgttttcaac
     1681 acagcctttg ccgatggtga cttttttcgc attgagggtt gggagatcgt acattgtgtc
     1741 aagtaataag ttctcgacaa tagaacgtaa cccacgagcc ccggttttgc ggctaatcgc
     1801 tttttgggca attgaaatta atgcatcttt ggtgaagtgc aattcaacgc cttccatttc
     1861 gaataaggct tgatattgct tgatgatcgc atttttcggc tcggttaaga tttgaatcag
     1921 agcttcttcg tccaattctt gcagcggagt caccaccggt aaacgcccga ttaattcagg
     1981 aattaagccg aatttgacta aatcttccgg ttcaacttgt ttgaatagct cggttaaatc
     2041 ttggcgatct ttatcttttt tcaatgccgc tgcaaaaccg ataccacctt gagtgttggt
     2101 acgggcttcc acgattttat ctaaaccggc aaaagcaccg ccgcaaataa agagaatttt
     2161 ggaggtgtcc accggaatgg tttcgccttt cgggtgtttg cgaccgcctt gtgggttaat
     2221 gttcgccacc gtgccttcaa gtagttttaa taaggcttgt tgaacacctt cgcccgatac
     2281 atcacgggta atggatgcac tttccgattt acgggtgatt ttgtcgattt catcaataaa
     2341 aacaatgcct cgttccgctt gttcggcttc aaaatcgcat ttcattaata atttttgaat
     2401 cacgttttcg acatcttctc ccacatagcc tgcttgggta agggtagtag catcagctac
     2461 cgcaaaaggt acgtttaaac ggcgggcaag ggtttctgcc aacaaggttt taccgctacc
     2521 ggtcggcccg attaataaaa tattactttt acctaactct acgccattag tggtttgatg
     2581 gtttgacaat gcacttctta agcgtttgta gtggttataa acggccaccg aaagcacttt
     2641 tttcgcgtgt tcttgaccga tgacataatc atctaaatga gcgtgtaatt cgtgaggtgt
     2701 cggcacattg gtgaaaaaac tgccttcatc gtcttggttt tcatcaatta acggctcttc
     2761 ttcaccgtgt aataaggcgt aggattcctc gatacattca ttacaaatat agccttctgt
     2821 gccttcgact aattgatcga cttcggtacg ttttttaccg caaaaactac agtggggttc
     2881 tttttcaaat gccattacgc cacctcactg cgagaagtta atactttgtc gattaagcca
     2941 tactcagcgg cttcttccgc agacataaaa ttatcacgct cggtatcggc taacactttt
     3001 tcatagctct gaccgctgtg ttctgccata cggtgggtaa gggtagcttt caagcgtaaa
     3061 atttcttccg cttgaatttg aatatcggtt gcttgacctc tcgctccacc taaaggttgg
     3121 tgaatcataa tacgagcgtg cggcagagca aagcgtttac cttttgcccc ggctgaaagc
     3181 aaaaatgccc ccattgaagc cgcttgccct gtgcaaaggg ttgctacatc gggtttgatg
     3241 aagttcattg tatcgtaaat tgccaagcct gctgttacca cgccacccgg tgagttaatg
     3301 tataaataga tgtctttttc cggatcttcg gcttctaaaa acagaagttg tgccacaatc
     3361 aggtttgcca tattgtcttc cacctgaccg tttaaaaaaa taatacgttc ttttaataaa
     3421 cgtgaataaa tgtcgtaaga acgttcgcct tttgaggtct gttccaccac cattgggact
     3481 aatgccattt tgttttcctc tgtcgtaata caaaatctcg ctattctagc aaattttcag
     3541 aaaatcatta acaacaagcg gtcagattgt taaaatcttt tgcaaatgat gaggaaatta
     3601 tgacattaac agaaatttac caaaaatttg aacgttgtaa atcgtgggaa gaaagatacc
     3661 gcttgttaat tcagctaagt cgcttgttac caaaaccaag tgagcaagag ttggcacaaa
     3721 tagcggaaat tgagggctgt gaaagccgtt tatggtttga atttcaagct gagccacgaa
     3781 aagtagtggc atatagcgat gcccgtttaa tgcaggggat tttatttatt gtgagtgtag
     3841 ctttaactga aaaaacggca gaagagctga aaggctttga cttaaaaacg atgtttgatg
     3901 agctaaaaat ttcacaaaat ttaaccagca caaggttaaa tgggttgggt cagttacaga
     3961 aacatataat gatgaatttg taatttaccc tctcccacaa ggggcgaggg taaataaaat
     4021 ccgcaggatt ttattcggga gaggggaata taaaaaacct ctgatttctc agaggcttaa
     4081 atttgttggc ggaacggacg ggactcgaac ccgcgacccc ctgcgtgaca ggcaggtatt
     4141 ctaaccagct gaactaccgc tccgtactgg tgctaaaata atagtggttt cctcaacatt
     4201 gagcaaatag tttttgcaaa atagtgttta attggttgta aaataaccac tttatttctg
     4261 cttgatcgcc ttgataaaca gcaacggcgg acggtgctgt aaatctttaa attcattgtg
     4321 ccaccgaggt tggtctgcca gcattggttc ttccatttgc acaatctcaa acccgccttg
     4381 aataaggtta ttcacaatgg ttgccattgt gcggtggtag gttttaaagg gttgttgaaa
     4441 ccaacttctg tcccgttcgc cctcttcccg ataatagttc aagcggtaag caacttgttg
     4501 tttttcttgg tttttctccc aacgatagcc ttctcggtaa caggtgacaa tcgggtgttc
     4561 ttgcgagaaa atcagcgtgc cacaagcagt cattttttgc gaaatttttg caagtagttc
     4621 ggaaaaatca gcaatataat gaaacgcaaa agagctggtt actacatcga aatcgccctc
     4681 gctgatctca tttaatcgct ccatcggcag gcagtaaagg gaaaaatcgt tgcctttttg
     4741 ccaatgagca gaaagatcgc tttctgcctg ttgtagcatt aattcagata aatccaaccc
     4801 caccactttt tctgcaccga gcgttaaata atgggctaaa tgaactcctg tgccacaacc
     4861 taaatccagc acttttttgc cggttaagtc tggcagtaga gagaacattg ttggcttttc
     4921 caccacttca ttcatactta ttggattttg tcgaagttgt tggtaacgct caaagaaaat
     4981 cggagtgtcg taaatgcttt ttttcactta atagccttta aacaaatata aaataaggcg
     5041 ggttaaaacc cgccactacg atatgattag taagtcgata attttcgcaa agtttctaac
     5101 gcttttccac tctcaagcgt ttcttttact ttttgcacat tggcttttaa atcatcttct
     5161 ccaaaggttt tcattaataa tgcgacattt gctgccaccg catcaatatg agccagttta
     5221 ccttttcctt gtaaaatagc ggttgctttt tcggcatttt ctgcaggttc accgcctttg
     5281 agatcttcta acgaatggcg ttcaatgccg aaatcttccg gcgttaaggt gtaatagtcg
     5341 atctgtccgt tttgaatttc cgcaacctgc gtttcgccgt gaacggcaac ttcatctaaa
     5401 cctgcaccgt gtaccacaat agtgtgttcg taacctaagg cttttacggt ttcagcatag
     5461 actttcacta actcagggga gtacacaccg agtaattggc gtttagcgtg agccgggttt
     5521 accaacggcc ctaaaatatt gaaaatcgtg cgggttttta aggcttggcg aacaggagcg
     5581 gcatatttga atccgctgtg gtaggttggg gcaaacaaaa agcagatgtt ggtttcatct
     5641 aaagcaaggc gtgccgtttc aggtgaaacg tcaacattaa tacctaaatg gcttaataca
     5701 tcgcttgagc cggttttact tgatacgcta cggttgccgt gtttggcaat tttatagccc
     5761 attgtggcgg caacaatcgc acttgtggta gaaatgttga tggtattatg cccatcgcca
     5821 cctgtgccga caatatccgc aaaagggtaa tcaggcgttg agaacggatt ggcattttca
     5881 agtgcggctt ttgcagcacc tgcaatttca tcaacggttt cgccacgcag ttttagagcg
     5941 attaaggcag cagcaagttg ttcatttgat acattgcctt taataacttc actaaaaaaa
     6001 cggtgagatt ccgcttgggc taaggcttgg ttggcgaata atttatctaa aagtgcttgc
     6061 atagtctctt cctttttaat tagcgatgta cctgatattc caaatcggtt gcctcgttgc
     6121 cggtcattcc acgaaagccc cagcaatgct ctggctgttc tttaatggtg atttcaacgt
     6181 ccatcggcac aatgccgact ttggtgtgta aggcactaaa tagtccttta attaagcgtt
     6241 ttttgagctg ttcgctccgc ccttgcatca ggtttatttc aatcacaata aaatcttggc
     6301 tacggttaat tgggggatag aaattttccg catccaataa gtcaaaacgc aaagcgtggc
     6361 gttgttttgg tacgccaagg ctcatttgca tacagtcaaa aatcacgtct gcaatcaggg
     6421 ctctgcggtc tgctaaggtt tgttttaatc catatacact aatcattttt ttctcctaat
     6481 aaccattcca ccgactgctt aagtaatttt gtgccttgca cggttaaaat ggattccggg
     6541 tggaactgga aaccgcaaat cggtaaggtt ttgtggcgaa ttgccatcac aatatgttca
     6601 aatttcgcat taacgataaa ttctgccggt aattcatcgc ccattaatga gtgataacga
     6661 gcgacaggca ttggattgtt aatgcctgaa aacatcgctt ggttatcgtg ttcaatacga
     6721 gaaactttgc cgtgcaatac tgtgccggta tgcactactt tgccgccaaa ggcctcaatt
     6781 agagcttgat gtcctaaaca aatgccaatc atcggtactt tgtctttcag acggcgaata
     6841 atttccaata aattgcctgc ctcagccgga ttacccgggc cgggggaaag ggcaaccaaa
     6901 caattttcgg tggtttcagc tttggctaaa aaatcctcaa gcggataatc attgcggaaa
     6961 atcgttacct gatgccctaa ttcacgaaat tgatcgacca agttataggt aaaagagtcg
     7021 aaattatcaa taaaaagaat atttgccata gtttgtcctt atgcttttgc attcacctgc
     7081 ccaatcgctt ttaacaccgc gcgtgcttta tggcgtgttt catctgcctc taattgtgga
     7141 tcggaatcca gcacctcacc acaaccagct tgcacatagg caatgccatt ttgaacaaag
     7201 gcggaacgga tcacgataca ggtatctaaa ttgccgtctg aggttaaata gcccaccgca
     7261 ccgccgtagc tatggcgttt ttgttgctcg acttggtaga tcagttgcat tgccttaatt
     7321 ttcggagcac cagttagcgt tcccatattc atacaagctt gataagcgtg cagagcgtca
     7381 agatcttttc taagtgtgcc gatcacacga gaaactaagt gcataatttg cgaatagcgg
     7441 tcaatttgca ttaaatcaac cacacggcga gtgccggatt cgctcacacg agccacatca
     7501 ttgcgggcaa gatcgactaa cattaaatgt tcggcaagct ctttttggtc taaacgcagt
     7561 tctaattcca aacgggaatc taattcagga tcgatattac cttgttcatc aaaaccgcgt
     7621 gggcgagagc cggcaatcgg gtaaatttcc aactggcggt tggcttgcga atatttcaac
     7681 gcactttcag gcgacgcccc aaacagagtg aaattttcgc cctgcatata gaacatatac
     7741 gggcttggat tgttgatttt gagctgttta tagctggcaa gagtattcgg gcaaggcaag
     7801 ctgaaacggc gagagggcac aatttggaac acatcaccga tattaatatg gtgtttgagt
     7861 ttgcggataa tcgctttgaa atcttcatct tcaatattgg cggttgcctc actcgttgcg
     7921 gtttggttcg ctagaggcag ttcaatatgt gacagatttg caagtttttg cgtaaattcg
     7981 accgcttgtt ggttcaaatt ggtttgttca ttcggttcaa aacagaaggt gtttagcacc
     8041 gcagtttcgg tttggtggtc gattgtaacc agttgctctg ctaaatagaa agtgtaatct
     8101 gggcaactta agccatcatc ttgcaggctg atattttcca tcggaataaa atttgttacc
     8161 aaatcgtagc taaataatcc gcccaaatag ataggcgatg tggaatcagc aaacagttgg
     8221 ctcaccgttc ttagcccgtc aaacacggtg gtggttttga gcttgctgtc ttcatctaac
     8281 tggttgctga tggttgggaa aatcgcttgc aagcggtcgt ttttgtctaa aaatttgcaa
     8341 gtcggagcag ggtttaacag gctcaatgcg tttgcaatca aaggtaaaac cgcttctccg
     8401 tttggggtta aagcgtggaa agtcacggtt tgatcttcac agaaaatatg cactgccgat
     8461 ttcgcaaaca gcaaactttt tacactgttt ttactttgaa tttccgctga atctaataat
     8521 agcgtatgtg ggcgttcgcc gcataatgcg taataaacac gggtcgtatc ggcaaaatag
     8581 ggtaattctg tttgagtaat cgttaattga ggcatagcaa attcctattc aatttttcgt
     8641 actattaaac tagtacatta aaaagaagtc aagcaattat tccagataat tatgcgagct
     8701 tgggcgaact tggtgtataa ttagcccaat ttttagaaag tcgaaggctt gagactatga
     8761 cacaattttt ttatatccac cccgacaacc cacagcaacg cttaattaac caagcggtag
     8821 agattattcg aaacggtggc gtaattgttt accctaccga ttcaggctat gctctcggtt
     8881 gtgcaatggg cgataagcac gcaatggata gaattgtagc aattcgtaaa ttgccggaaa
     8941 atcacaattt taccttagtt tgtagtgatt tatccgagct ttctatctac gcgttggtca
     9001 ataatcaagc ctatcgctta attaagaata ataccccgaa tccttatact tttattctgc
     9061 cggcaactaa ggaacttcct cgcaggctga tgacaaagcg taaaacagtg gggattcgtg
     9121 tgccggataa tgcgatcgca ttggcgttaa tttccgcctt aggtgagccg attctttctt
     9181 gctcgttaat gttgccggag acggaaatga ccgagtcaga ccctgatgaa attcgggatc
     9241 atttgcaaaa tcgggtggat ttaattatcc acggtggtta tttagggcag cagcctacaa
     9301 cggtagttga cttaaccgat gacgtgccgg ttattattcg agaaggatcg ggcgatccaa
     9361 caccgtttaa ttaaattgat gttgtatgat taatatatag aattatgcgt aggggggctg
     9421 tgccagtccg tattaatatc gttatttgga cagacacagg acctgtccct acaatgaaaa
     9481 tcaaattcag acgcttgtga aagcgacaaa aggaacctta tgacaacttt tcaaaaaaaa
     9541 tcaactgcga ctttccgtgc agacaaacgt ggtgaaagcc gtccctcatt taaaaaagaa
     9601 gagcaaaaat ctgaacgcaa atttggtaaa acgtcagaaa aaccaccacg tccaacttct
     9661 aagccattaa cgcaaagaat tgcaaaaaaa gtggaaaaaa cgaccgctag tgaagtggca
     9721 tctcaagaga aaaaagccaa agtagtaggt gaaaagctac aaaaaatctt agcgcgagca
     9781 gggcaaggtt ctcgccgtga attagaagag attatcgctg ctggacgagt gagcgtggac
     9841 ggtaaaatgg ctactcttgg tgatcgtgtg caggttagct catcgactaa aatccgcatt
     9901 gacggacatt tagttaattt aatgccggca caaaaagaga tctgccgtgt attaatgtat
     9961 tacaaaccgg aaggggaact ttgcacccgt tccgatccgg aaggacgagc caccgtattt
    10021 gaccgcttgc ctcgtttaag tggcgctcgt tggattgcgg tcgggcggtt agatattaac
    10081 acctcaggct tattattgtt cactaccgat ggcgaattag ccaaccgttt aatgcaccca
    10141 agccgtgaag tcgaacgtga atattcggtg cgtgtgttcg gcaacattga cgatgcgatg
    10201 ttacaacgct tacgcaaagg cgttcagttg gaagacggac cggcaaactt taaacaaatt
    10261 aaggttgtgg gtggcacagg cttgaaccaa tggtttgatg tgactttaac cgaagggcgt
    10321 aaccgtgagg ttcgccgcct gtgggaatcg caaggggtag aagtcagccg tttgattcgt
    10381 atccgttacg gcaatatcaa attagataaa ggcttacctc gtggcggctg ggaagaaatg
    10441 ggcttagaac aagtcaatta cttgcgtgag ctggtagggt taccgccgga gactgaaact
    10501 aaagtggaag tgggggtaaa ccgccgccga accaatatcc gtcaaattcg taaagcggta
    10561 aaacaacatc aaaaatatcg tggctaaaca ccatctttgg ggctgcatta gttctgctaa
    10621 tgcagctatt ttctttcaaa aaggagcatt tatgtcttgg gatattgttg caacattggc
    10681 ggtcactggg attgccgtat ttttatttgc aactgaaaaa atgcgaatgg acgcagttgc
    10741 gattttagtg ctgtgttcat tagtattatt agggcaggtt gataccaaat ctgctctgag
    10801 tggattttca aactcagcta ctgtaaccgt aactgcaatg tttgtattag ctgctggttt
    10861 acaaaatagt ggtgctttag atagtgtagg cagtttactt gctaaggtaa aatccccttg
    10921 gttattcttg cttgtactct gtggcgtaaa tgctgctgtt tctccttttg tgaataatac
    10981 ggcagtggtc gcagtattaa ttccgattgt gattgtcgca gcacagaata taaaaatggc
    11041 tccttccaaa gcccttattc cgttatcatt ttcttctcaa atggcaggtg tttgtacact
    11101 gatcggcact tccactaatc tattagttaa tgcaatcgct caaaagcaag ggcattccgg
    11161 tttcggtatg tttgaatttg cccctttggg gattattttt ttagtggttg gggttgccta
    11221 tttattagtg accagccgtt tcttattacc cgaatcacat ttgcaacttg aagatggtga
    11281 ggggtttgga aaatatgttt ctgaacttaa agtaaataaa gactctgtat taattggcaa
    11341 aagtacattt gaatcaggat taaatgaaga atttaatcta tttactattg gtgttttgcg
    11401 tgatggggaa agattatcga caccgagtca tcaagtattg caaaaacatg atattttatt
    11461 gttgcggggt gaatcggaaa atttagcaaa agtacgagaa aaatatggat tgcaccacgt
    11521 tgtgtatgga cgccgtgaga atgatgaaga taatctggat gaagacttga tggtggctga
    11581 agtgatgatt tctcctattt ctcgttggat aggagggact attcctattt tacaacagcg
    11641 ttggaataaa aatgcaacgg tgttaggcat tcaacgccaa agtaaagtaa ttcgtgagcg
    11701 tttacgcacc actgctttta aaatggggga tattttatta ctcacattac caaaagagga
    11761 tatggagacg ttacgccaag ataaagactt tattgtgtta tcttctgatt tagtcaaaac
    11821 ggaggaatcg tggaaaagta aatttgcttt aggggtaatg gttttggtgg tggcaacagc
    11881 agccttaggc tgggttccta tttcagtgag tgccttaatt ggtgcagttg cgatgtgtgt
    11941 tgctggttgt ttaacggctg aagaagccta tcaatctatt gactggaaaa tcattttagt
    12001 cttagctgga ttactgccat taggtgaagc gatggcaaat agtggggcgg cgcaatttat
    12061 tgttgataac acgcttggta aagtagggga gttcgggcct ttagtggtgt tagctgtatt
    12121 atatttactg acaatggtgt taaccgaatt tatgagtaat gcagggactg ccgtgttgct
    12181 tacgcctatt gcggtttcta ccgctaaaat gttaggggta gatgcttccc cattcattat
    12241 tgccgtaatg tttgcggctg cgaccagctt tatgacccct gttggctatc aaaccaacac
    12301 gatggtatac ggtgcaggtg gctataaatt cacagatttt attaaaattg gtttaccgct
    12361 aaatgtaatc tattggattt tagggatagt attaat
//
LOCUS       DANLUT010000062        12307 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLUT010000062 DANLUT010000000
VERSION     DANLUT010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12307
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            1..1366
                     /locus_tag="PXB38_001338"
                     /pseudo
     CDS             1..1366
                     /locus_tag="PXB38_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992286.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
     gene            complement(1453..2313)
                     /gene="pdxY"
                     /locus_tag="PXB38_001339"
     CDS             complement(1453..2313)
                     /gene="pdxY"
                     /locus_tag="PXB38_001339"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL5353664.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            2432..2507
                     /locus_tag="PXB38_001340"
     tRNA            2432..2507
                     /locus_tag="PXB38_001340"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2465..2467,aa:Thr,seq:tgt)
     gene            complement(2602..3555)
                     /gene="accA"
                     /locus_tag="PXB38_001341"
     CDS             complement(2602..3555)
                     /gene="accA"
                     /locus_tag="PXB38_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL5353665.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(3609..5033)
                     /locus_tag="PXB38_001342"
     CDS             complement(3609..5033)
                     /locus_tag="PXB38_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL5353666.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSIERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(5035..5769)
                     /locus_tag="PXB38_001343"
     CDS             complement(5035..5769)
                     /locus_tag="PXB38_001343"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL5353667.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            5916..6413
                     /gene="tpx"
                     /locus_tag="PXB38_001344"
     CDS             5916..6413
                     /gene="tpx"
                     /locus_tag="PXB38_001344"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL5353668.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(6498..8123)
                     /gene="yidC"
                     /locus_tag="PXB38_001345"
     CDS             complement(6498..8123)
                     /gene="yidC"
                     /locus_tag="PXB38_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL5353669.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(8276..8701)
                     /locus_tag="PXB38_001346"
     CDS             complement(8276..8701)
                     /locus_tag="PXB38_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL5353670.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(9030..12122)
                     /locus_tag="PXB38_001347"
     CDS             complement(9030..12122)
                     /locus_tag="PXB38_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL5353671.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFAHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         3390 a         2543 c         2639 g         3735 t
ORIGIN      
        1 cggctctact ttatcactag ctgcggtaaa agagggtaaa gctcagtatg tgacccaaaa
       61 aggtttatca atgagtgcta ttacttctga ttccgcaatt aagggtaact ttgctgcaat
      121 agaaacctca gggttattaa ctgcgacggc ggaaaaaacc aatgagaatg aagtaaaagc
      181 aacagttagc cggaaaaatg tagcagacta tgtaaacgaa aacacctctg gtgatgcaat
      241 gtggaaaaat gtcgcgactg ctttagagag ctcattttcg gcattggata accaaattga
      301 aggaaataat ggttctacaa atgctacaaa tgatgaattc gcacaacaag cggctacttt
      361 acaaaacagt attgcaaaca tcaatacgca aagtgtggtt ttagatagct tatctggtca
      421 aatttatgcg tctgcgcaag cgcttacttt tgaaaactca gaaacagtga ataaagatct
      481 ctctaaccgt cttgtaatgt taggaacgct ggataatgta ggtgagactg ctggtgtgtg
      541 agtaacgggt atttatggga atggtactct aaaagaaata gggtttggtg aaggtaaaac
      601 caatacctat gctggccaaa taggttttga taagccagtt acagaccatg tgattttagg
      661 tgcggcactt aattattcta aagcaaaagt gaacttcgat cgttatggcg gtagttcaaa
      721 agcagatgga ataggtgcat cattatatgc ccgtataggc aataagcata aaacaccttg
      781 gtatttacaa ggtcgagccg gttatggcag tgttgattca gatgtagagc gtcatattat
      841 tttggcggat aataacgcaa gtacagcaaa aatcaaccac cgagacagag tgttttctgc
      901 ttatgtcgaa tcaggctatg acttcaagca aggtcgcttt gcgttaactc catttgtcgg
      961 ttttagtcat gatgttgtca gacgtggcgc attcagtgag caaaacagtc aatttggtct
     1021 caccgcggac aaagcaacct ataaacaaac aagcggattg attggtttac gaacatcttt
     1081 agaggtgaat ttagctggga tgaaaacgac tttccaaggc tatgtaaatc atcaaaaagc
     1141 gtttaatcga gaagatctta gctttaaagc aagttataca ggtttacaag atgcaaaatt
     1201 cgacgtaaaa ggtattgggc ttgcaaaaca taaaacgtgg gtagggattg gtgcattggc
     1261 ggaagtaaat aaaaatactt ccttatatgt gaattacgac cttaaactcg caaaaaatag
     1321 tggtcacaac aacgttgtga ctgctgggat tagaattaat ttctaactga atctttttaa
     1381 acaaaacggg cgtttatacg cccgtttttt tatagttata gagataataa tgttatttta
     1441 tacttcattt aattaggcaa tctttacagc ttggtaacta cactgtggat taacaatccg
     1501 atcacgagaa gcaataattt gtaactcata aagccctgat ctagcggttt gttccattac
     1561 ctcattgacc gcatttgcag tgtgttcaaa ggcttctaga tcggattttc catttaataa
     1621 gttcgccaca aatagccctg cggttaaatc gcctacaccg acaggttctt tggcaaattg
     1681 gtagagtggg cggctgatgt gccaaatgcc atcttggttg gcgaacagca tttcaaattt
     1741 gttgctctct ttgccgactc ggcttaaatg tttaaccaat acttttttcg ggcctttggt
     1801 taaaatcact ttcactgcct cgaccgcttg ctcaaaattt tccaccgtta aaccggttaa
     1861 ttctcttaat tccactaaat ttggtgtgat aatgtcggct tgtgccattg ccagattgat
     1921 caatccctct tttacgccgt ctgccacaat gcagcctttg tcggggtgtc ccattaccgg
     1981 gtcgcataca taaattgcgt ttggattttc cgctttcact ttatgaaaag cctgaataat
     2041 ttcggctact tgttctgccg agccgatata gccagagagt acggcatcgc aacgatgcag
     2101 ttcaccgata ttgtgaatgc catcaacaat gctaccgatt tgttcttttg gcatcaccat
     2161 accgccccat tttccatatt gggtatggtt ggaaaactgt acggtattta acgcccatac
     2221 atcaacacct aacagctgca taggaaaagt tgaagcctta ttgccggcat agccgtagac
     2281 aacgtgcgat tgtatggata gtatgttttt cattcattca ctcctttaaa atttcaatat
     2341 gtgttgtttt ttagtcattt gaagttgcaa ggacttgaag ctcatcaaga aatctctata
     2401 atcccgcctc gttctcttat ccattcaata tgccgactta gctcagtagg tagagcaact
     2461 gacttgtaat cagtaggtca ccagttcgat tccggtagtc ggcaccatca cctttatttt
     2521 ctgatgagtc ccctttaatg taaaatggca agattttgca aattttcaca aaaatcttac
     2581 cgcttgtagg gtgaaattga attagacgta accgtaattc attaagcgtt gataacggcg
     2641 ttccagtaaa tcctctttat taagttgatc taaccctgcc aaatcttcaa caatacgctg
     2701 tttaaggttt tgggcgattt gttcaacatt gcgatgagca ccgcctaagg gttccggcac
     2761 gatgttatca atcagctcaa gctcttttaa acgaggggca gttaaaccca ttacttctgc
     2821 tgccgttgag gctttatcgg cacttttcca cagaatcgag gcacagcctt caggtgaaat
     2881 taccgagtaa gttgaatatt gcaacatatt gaccttatcg cccacaccga tcgctaatgc
     2941 accgcccgag ccaccttcgc caattaccgt acagattact ggcacggaaa gttgagacat
     3001 ttcacgcagg ttacgggcaa tcgcttctga ctgaccacgc tcttccgcac caatgcccgg
     3061 ataagctccc ggtgtgtcga taaaggtgat gattggcata ttaaagcgtt ctgccatttc
     3121 cattaaacgt aacgctttgc gatagccttc aggagcaggc ataccaaagt tacgtttcac
     3181 tttctctttt acggtacgac ctttctgatg accgataacc atcaccggac gtccgtccag
     3241 acgggcaata ccaccgacaa tcgctttatc atcggcaaag gcacggtcgc ctgccagttc
     3301 gtcaaattca gtgaaaatat gctcaatata atctaaagtg tacgggcgat tggggtggcg
     3361 tgccatacgg gaaatttgcc acgcatctaa attagcaaag gttttcttgg ttaattcctc
     3421 gcttttcttt tgtaaacgct tgatttcatc atcaagatta attttgtcat cttgctcgct
     3481 gactgctctt aaagactcga tcttggcttc caattcagca atcggcaatt caaaatctaa
     3541 aaattcttgg ctcattctat tttccttttt atgggcaaaa ttatggggca ttattgctta
     3601 tcagtcggtt attgtccatt ttcaattacg ctaaattgac ccatcgtacc tctatcacgc
     3661 agcataaaat cgctcacgcc aaaggtaaat ggcagttgct caggggcagt attatcaaag
     3721 cgaaccaaca gcgtgatttc ttgctccgcc tcgagccaaa cggtgtcccg ccacgcaagt
     3781 tgtttgatag ggtattgctt gcggtttagg gtttcaataa tgaattttgc accttgtagc
     3841 gtaaatccga ccgcttgtgt gctatgtaaa taccaacgct caatgctgcc tttttgcgcg
     3901 gtaaaatcaa tgcgttttgg gtcaaaccgc ttttggttga ttaaataatc agccggacga
     3961 atggcaaaac gtctctcttg gctgattttc aggttaaatt cctctaagtt gaaagccggt
     4021 aaactcggtt tattattcaa taccgctgcc attccttcag ggcgaagctc taaaatcacg
     4081 ttatcattca attcgtcgtt gtcagcaaag acctgcccga ttttgtaaaa aatatctctt
     4141 ttttgaccgc ttatcagcga taccgctttc ccttcgctta aatcgaccaa cacttccacc
     4201 ctttcactcg gtgcaagttg aaccgattcg gtttcaagtg gctctgccag cattcctaag
     4261 ccggtggcga ttaggtacaa cggctgctcg ttatctaagc gtaattcata agcacgggaa
     4321 agtgaggcat tgacgatccg caatctgacc cagccacgag gcacgttaaa ataaggcgat
     4381 tcctgcccgt tgacaaataa tcgcttaccg aaaaattgtg aggtgttttt atctaacacc
     4441 tgtacgccgt ctttgttgag aagctggtct tgcagaatta acggaatgtc gttcacgcca
     4501 tatttattcg gtaaagtggc ttttttgctc tgttcatctt caatcatcca caagccggct
     4561 aagccacgat acacttggaa tgccgagttg agcattgtat cggcgtgata ccaacaagta
     4621 caagccggtt gattgataga aacaatcggc gaccagctac ttttggggtc aagggaacga
     4681 tgcaccgtgc caatcatctc acttgaggct tgcaatcctt gaatattcat tgagattttt
     4741 tgcggtaaat tattgagata agttaatttg acaaaatccc ccgattttac ccgtacggtt
     4801 ggggcaagat attgcccgtt cacaccccat acatcaacca atttgccttt atcaaattgg
     4861 gtttgtgcgg ggcgtaaatc caaccgaacc ggctttcctc gcccaatatc cattaaaggc
     4921 ggaatgttca gttgcggtcg ctctgctgct aatagcggtg ttggcactgt tgcaaatcca
     4981 gccgcaaggg cagagccttg taaaaattgg cgtcgggtga tctgtttttt catattaggc
     5041 gttttttgca gtgttttcta actgttcgac ttcttgatta agttgttcaa attttgccaa
     5101 cataatttga tggcactttt ccatcagttc tttgacgttt tcacgggaat agcctgaagt
     5161 atcaatcgga tcaagcattt cacagattac tgtgccgtta tttgaacggt tcaaatccac
     5221 tttattgtgt aaattagagc aaactaccgg cacaatcggc acgccggcag aaatggctaa
     5281 atggaatgca ccggttttaa atggcagtaa accacgccca cggctacgag taccttccgg
     5341 gaacatccac accgacacat tgcgttcttt cacgatttgc cctgctttat tcattgtttc
     5401 aatcgcactg gaacgctttt cacggtgaat aaaaatattg ccggttgccc agtaaaccaa
     5461 accgaaaaac ggaatccaaa tcaggctttt tttgccgata ctcaccgtct tttctgccac
     5521 cattgaggaa atcgttacca tatcgtaatt gttttgatga ttgccgatat agacaaccgg
     5581 atagttaatt tccggctttt tgcgggtaat taattccaac ccgactaatt tatgcaaagc
     5641 accaaaccaa cgagctacca cacccacgct acttgggtga cgtaaacgca gtaacgcata
     5701 aatagtgcca aaaatagaaa tgaaaatagc ggcaagggca acaattaaaa tacgaaaaat
     5761 ttttaacata atggaataac cttaaaaata aattgtctag gagtatagca aaataaggtt
     5821 attttctaaa ggctatccac attaaattga tagtttccta ttttgcaaaa aatcggtata
     5881 tttaaaccgc ttgtttattt gataaggaga aaaaaatgag taaagtgact ttagcaggaa
     5941 gcccgattga tgttgcaggc acatttccac aaaaaggcga tgtggttgcc gattttacct
     6001 tagtcaacag tgatttaagt gatgtttcgc tttccgattt tgatggcaaa cgcaaagtgt
     6061 taaatatttt cccaagtatt gacaccggca tttgtgccac ttctgtgcgt gtgtttaatc
     6121 aaaaagcggc tgatgtagcg aatacggttg tcctttgcat ttcagcggat ttaccttttg
     6181 cccaagcacg tttctgtgga gcagaaggaa ttgaaaatgc caaagtatta tccagtttcc
     6241 gtcatcgtga tttacacaac aaactggggg tagatattat ttcaggtccg ttggcaggct
     6301 taacttcacg ttcagtaatt gtgttagatg aaaacaacaa ggtattacac agcgaattag
     6361 tgccggaaat taaacaagag ccggattatg aggcggcgtt agcggtatta taatttgcag
     6421 aattatgctg gaaaataacc gcttgtaaag caacaaaaag cccgttgatt caattcaacg
     6481 ggctttgttt ttagtgatta tttcttacga gagtgtaagc cttttttctc aaggttacgg
     6541 taaatcaacc attgctgtgc aatcgtgatt aagtttgagg ttaaccagta aagcactaag
     6601 cctgatggga accataagaa gaacacggta aagataaccg gcataaaggt cattactttt
     6661 tgttgtaccg ggtcagctac cggtgttggc gacatttttt gtaacaagaa catcgaacca
     6721 cccattaata aaggcaaaat gtagtatggg tcttgtgccg ataagtcttg aatccagccg
     6781 aagaaaggtg cgtggcgtaa ttctaccgct tccataaatg tccaatataa agcaatgaaa
     6841 atcggcattt ggattaaaat tggtaagcag ccacccattg ggttcacttt ttcttctctg
     6901 tagagtttca tcatctcttg gctcatacgt tggcggtcgt cgccgaaacg ttcacgcatt
     6961 tcagtaatgc gaggttgtaa catacgcatt tttgccatcg aggtgtattg tgctttggtt
     7021 aatgggtaaa gaatggtttt cactacaata gtgacaccga taattgccaa gccccagttg
     7081 cttacgattt tttgaattgc ggttagtaac cagaaaagcg gtttagcgat aaaccacgcc
     7141 cagccgtaat ctacggttaa gtctaggtga tttgctgatt cgcccatttc tttctgatct
     7201 ttagaacctg tccaaagttt gctatttaaa ttagcctctg aatttggcgc aatcgtagtt
     7261 aaagggccac ggtaaccgat agttgctacc ccattattgg tgcgtgaata aaggctgtta
     7321 tccgcatctt ggtttggcac ccaagcagac acgaaatagt gctgtaatac cgcaatccaa
     7381 cccgctttgg tgtccacgct taagttggct ttttccatat cttggaaact gtattttttg
     7441 tagttggttt ctgaagaaga ataagccccg ccggtgtaag tcggcatggt taaattgccg
     7501 gaactttcaa ctatagagtg ttttaattgc ccgtaaggct gaacttcaat cgcttgtgca
     7561 gtattatttt tgatattgaa gtttacccca acatcgtagc taccacgttt tagcgtgaaa
     7621 gttttggtgt aaaccacacc ctctttttca aaggttaatg gtacagaaat ttcattttgc
     7681 ccttcggcta atttgaagct atctgccgtt accgcatatt gtgggcgacc ggcattggta
     7741 tcaatcccgt ttttacccac taaaccgctt tgagcaacgt agattttgtc gccgtcttgc
     7801 tgtaatagtt taaatggcgt gttagagtgt aattcagcat tgtgttttaa caaatctgag
     7861 ccgatgacat caccgcctaa ggtatcaata gtcagacgta atacatcgct ttccacggta
     7921 atggttttac cttgcgtgat gctatctgcg attggattat tggcattgga agcagacgga
     7981 agatcacccg cttgttgggt ttgtgctgcc acttgagctt gtttttgtgc ttgaatttca
     8041 ggatcaaaat cttgttgcca ttgtgtaaaa atcaaaatag acacaagaaa taaacccatt
     8101 agcagtaagc cacgattatt catgttggaa ttctcttgtt agtaatggat aaaaagaaag
     8161 gtattttata ataggttagc ttgttttcca aacgcctttt atgaacaagc ggtcggattt
     8221 tccaagtttt ttgcaaaatt ttcggagaat ttgaccgctt gtggagaata agaaactaac
     8281 gtttatctaa ggttttggtg gaaaggcgag caactgcaca caggttacct tgttcgtctt
     8341 taatgtcgat attccaaacc tgtacttcac gccctaattt cagcggtgta gctttggcaa
     8401 tcgcttttgt gcctgccgga atcgatttta aatggctgat gtttagctcc attcccaccg
     8461 caatttgatg gggttcacac accattaacg cccctgcatt ggcagtagtt tccgcgagtg
     8521 ctgccgatac accgccgtgc aatacgccaa acggctgttg agtgcgttcg tccacctgaa
     8581 gctgtgcttc aatccaatct tcaccgatag cggtaaattc aatccctaag tgtgacaccg
     8641 ccgatttttg gctgagtgtg tttaattgtt cacaagttgc tgtttgcttc caaatggtca
     8701 ttattatttc ctgtctaata aaaaagctgt ctatttagac agctttcatt atctctttga
     8761 gcgaaacata ctacgccaat agtacattgt ttggtcgccc atattacctt aagccatata
     8821 gcactaagga ggtgatttat gtgagaaaat cagaagtttt ctttctggtt gcgttgctaa
     8881 tattattagc aacttccgct agcattaaag tactcaccat acttgatgtg ctagtttggt
     8941 tattcgctag ataacctaaa atcagacaga ggcaggctgg ttacctgcct cgctttttat
     9001 tctaagtcct tttaggttac atttcaacct taaatcacgt ccagcaacgc ttgaattggg
     9061 tgtttaatgc cttgttgttc aaaacgtttg acttgcgagc ggcaggagta gccggttgct
     9121 aggcaacgct caagcggttt attttttaat ttaatttgcc atgattgctg ataaatcgct
     9181 ttcgacattt caacgtgttt ggtttcgtgt ccgaacgtgc ctgccattcc acagcaaccg
     9241 acattttcat tgagtaaggt ttcaccaaaa tgggcgaaaa tagcttgcca ctctttcatt
     9301 gagcttggca aggcggtgga ttcggtgcag tgagcaaata aataccacgg caagcggtcg
     9361 gaatttgccg attttttgca attttccagc tcgccgtttt taatcacttc ccttaaccat
     9421 tcgtgtgcca ataagacttt gaaatccccc cgagcttctt tgaggatctc tttgtattct
     9481 tcacgataaa gcaaagttaa ggcaggatcg acagccacca tcggtagccc caatttcgcc
     9541 acacggttta aaaaatcggc ttggtttttc gctgttttcg caaatttatg caaaaagcct
     9601 ttaacgtgtt gtgctttacc acttggcttg aatggcaaca caatcggctt aaagcctaat
     9661 tttttaatga gagcgataaa gtctgccacc actttggcat cgtaataaga ggtaaacgga
     9721 tcttgcacaa taaacaaggt tttgcaattt tttgcagaaa aatcaccgct tgtagcttgt
     9781 tgttcaaggc tttctaagct ctcgccttgg tagccgactt ccaccaactg atgttgcaga
     9841 tttggcactg acaatgccgg caaataggtc attccaatgg ttttgtttgc agctttttcg
     9901 gcaaaagttg aggtgctgaa aaagttaaaa aaacgtggtt gtttcgccat taaaggggcg
     9961 ataaattcta agtttgagac cacataatct ttcagtggtc gcaaatagcg gctgtggtaa
    10021 agctcgttaa attgcgatct gaacgtcggt acgtcaattt tgattgggca ttggctggca
    10081 caggctttgc aggcaaggca ggtgtccatc gccgctttga cttcgtgtga aaaatcatac
    10141 tctttgtttt tattgagcgt gttgcgaatt tttgcaacaa aatcagctaa tttgaccgct
    10201 tgtttgcgag gtttgaagat caaatcgtcc ggcgaaacgt tttgttcggt aagtaatctg
    10261 agccattcac gcacaagagt agcccgccct ttcggtgagt aaagacggtt gcccgagact
    10321 ttcattgaag ggcacatcgt gctgtgtaca tcaaagttaa aacatagccc gttgccgtta
    10381 caattcattg ctcctttaaa ttcttctcgc acttggattg gaatttggcg gtcaaaatcg
    10441 gctcgcattt gtgagtcaat cgggtagagc gaggtttcgc tttctaatgg tgtacaaatt
    10501 ttacctgggt tcaagcgatt gtacgggtca aataaggttt tgatgtaacg gagttcttgc
    10561 cacaaagttt cgccaaagaa acgttcgccg tagtaagaac gcataccttt gccgtgttcg
    10621 ccccaaatca agccaccgta tttggcggtg agttcgacta cttggtcgga aatttgctta
    10681 aaggtttcca cttgggcttt gtcgcataag tcaagagcag ggcgaacgtg tagcacgccg
    10741 gcatcaacgt ggccgaacat tccgtaaggc agattatagc gatctaataa agctcgaaat
    10801 tccacgatgt aatcggcaag gttttccggt ggcacagcgg tgtcttctac aaaggcgatc
    10861 ggttttgccc agcctttggc attgcctagc aggcctacgg cttttttccg cattgcgtag
    10921 attttctcga tagaatttac atcactcgtg agttggtagc cgataatccc ggcttcatta
    10981 tttgccattt tttgatcaag gctttggcag agtgctttca cttgggtttc aatttgagtc
    11041 tgatcgcttg aggcatattc aacaatgtta atccctaaaa tcgggttggc tgggtcttcg
    11101 gttaataaat ctgacaccga atgccagacg atatcttgct tggcaagatt gagcactttg
    11161 gaatcaaccg tttccaccga taaggctttt gcctctaaca taaaaggagc ggagcgtaag
    11221 gcggcatcaa aggaattata tttaatatta attaaggtgc gatatttggg aatcggcagt
    11281 aaattcagtt tggcttcgca aataaaggca agcgaacctt cagaaccggt taaaatacgg
    11341 gtaaggttaa attcgctttc accatggtta aacacatttt ttaaatcata gccggtaata
    11401 aaacggttaa gctgaggcag ttcgttcagc actttggggc gtaatgtttt gcaacggttg
    11461 aaaatttcac ggtgcaaggt tttgccgaga gcggagagat ttaacccttc aatatgtgca
    11521 aaaaaatcgg cagatttgac cgcttgtgtc tctaaaatat cgccgttaat aagcacagat
    11581 ttgatggcaa gaatatgatc agatgttttg ccatattgca aagaaccttg cccagaggca
    11641 tcggtgttga tcattccgcc taaagtcgct cggttactgg tagaaagttc gggggaaaag
    11701 aaaagtccat gtggttttaa aaattgattg agctggtctt tcaccacgcc agcctgcact
    11761 cgaacccaac gctcttccac attcagttcc aaaatctgat tcatatggcg ggagagatca
    11821 acaataatat tattgttaag agattgcccg ttagtgcctg tgccaccgcc tcgtggagta
    11881 aaagttaaat gttgatattc tggcttttgg gcaagtttgg ttagaattac gacatcagaa
    11941 acggatttcg gaaacagaat agcttgcgga atttgctgat acacgctgtt gtctgttgcc
    12001 agtgaaagcc tatctgcata atttgatgca atttccccac taaaatgctg attgacgagt
    12061 tcagttaaat aggattgggt ggctttatcc agttgcggta cttcagagag tctaggtatc
    12121 ataagctgtg tttggttttt tataataaaa gcactaaatt ttgcttatct tagcaatttt
    12181 tctaaaaatt gggaatggaa tatcaatttg attaaatagt gttcgaaaaa tggtttttgg
    12241 ttaaaatata gacaaattat tacgtttcta tacatttcat caggaaaaaa cgattgattt
    12301 ttcgaaa
//
LOCUS       DANLUT010000063        12252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLUT010000063 DANLUT010000000
VERSION     DANLUT010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            138..1115
                     /locus_tag="PXB38_001348"
     CDS             138..1115
                     /locus_tag="PXB38_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5353672.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYRYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPEFLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            1102..2769
                     /locus_tag="PXB38_001349"
     CDS             1102..2769
                     /locus_tag="PXB38_001349"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5353673.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            2773..3192
                     /locus_tag="PXB38_001350"
     CDS             2773..3192
                     /locus_tag="PXB38_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353674.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(3427..4188)
                     /gene="nudC"
                     /locus_tag="PXB38_001351"
     CDS             complement(3427..4188)
                     /gene="nudC"
                     /locus_tag="PXB38_001351"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL5353675.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(4181..4864)
                     /locus_tag="PXB38_001352"
     CDS             complement(4181..4864)
                     /locus_tag="PXB38_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL5353676.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWHIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(4861..5709)
                     /locus_tag="PXB38_001353"
     CDS             complement(4861..5709)
                     /locus_tag="PXB38_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5353677.1"
                     /translation="MEKRTLALLKVHGTAVLFGASVIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(5709..6194)
                     /locus_tag="PXB38_001354"
     CDS             complement(5709..6194)
                     /locus_tag="PXB38_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL5353678.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSATSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(6196..7518)
                     /gene="pepQ"
                     /locus_tag="PXB38_001355"
     CDS             complement(6196..7518)
                     /gene="pepQ"
                     /locus_tag="PXB38_001355"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL5353679.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     VPFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFVGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            7529..7771
                     /gene="tusA"
                     /locus_tag="PXB38_001356"
     CDS             7529..7771
                     /gene="tusA"
                     /locus_tag="PXB38_001356"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL5353680.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(7838..8269)
                     /gene="rraB"
                     /locus_tag="PXB38_001357"
     CDS             complement(7838..8269)
                     /gene="rraB"
                     /locus_tag="PXB38_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL5353681.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(8284..8895)
                     /locus_tag="PXB38_001358"
     CDS             complement(8284..8895)
                     /locus_tag="PXB38_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL5353682.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFEVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(8897..9313)
                     /locus_tag="PXB38_001359"
     CDS             complement(8897..9313)
                     /locus_tag="PXB38_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL5353683.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(9317..10147)
                     /locus_tag="PXB38_001360"
                     /pseudo
     CDS             complement(9317..10147)
                     /locus_tag="PXB38_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
     gene            complement(10484..10599)
                     /gene="rrf"
                     /locus_tag="PXB38_001361"
     rRNA            complement(10484..10599)
                     /gene="rrf"
                     /locus_tag="PXB38_001361"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(10761..>12252)
                     /locus_tag="PXB38_001362"
     rRNA            complement(10761..>12252)
                     /locus_tag="PXB38_001362"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         3669 a         2782 c         2343 g         3458 t
ORIGIN      
        1 aattattttt ctttataaat caataagcta ccaaagacca ataaaaaaga gtgtttgtca
       61 agacttgtct tgaaactttt tttgcataca atcatctacc agttccaaac ataaacttta
      121 agatagagcc tacgaatatg tctagaaacc tcttccaaaa acgcttaaat attaagccgt
      181 atgagtatcc tgagcttctt gaatttaaag atgcaattcg ccattcttac tggttacaca
      241 ccgaatttaa cttcaccggc gatattcaag actatcgcac caccattaac gatcacgaac
      301 gtcacgtgtt aacccgagca atgcttgcga tttcacaagt agaagtgaat gtaaaacgtt
      361 tctggggcga gctataccgc tatttcccaa aaccggagat ggacgatgta ggcggtactt
      421 ttgctgaaag tgaagttcgc cataaagatg cttactcgtt cctattggaa aaattaggcc
      481 taaatgaaat gttcagtcaa attcatgaaa ttgaaccatt aatgaaccgc attcgttata
      541 tggaaagttt tatgaaagat aaagatgctg gcaaaggcga atttgtttta tcgttagtgc
      601 tgttctcttt atttgttgag catatttcat tgtttggaca gtttattatc atgatgtcgt
      661 tcaacaagca taaaaacctg tttaaaggga tttccaatgc ggttgaagcc acctcaaaag
      721 aggaagaaat tcacggtaaa ttcggaattg cgttatacga aattttacgt gacgaacaca
      781 gtgaactatt cacaccagaa ttttttgaag atttgcaaac cttggcaaat caagcgtttg
      841 aagcagaacg tggcatctta gactggattt tcgaagaagg tgatttaagc tttatcacca
      901 aagcgacggt agaaaattac attaaaaacc gttacaacaa ttctttaagc attttagggt
      961 tagagccgcc acacgacatc gaccctgaat tcttaaaaga gactgagtgg tttgatattg
     1021 aaattctttc aaccaaagaa accgatttct ttaacaaacg tagcaccgat tattctaaaa
     1081 aaatgaaaca gattaccgca gatgacttat tttaatacag accgcccgga cttccactgg
     1141 cttaatgaag acagccgttt attcttacaa cgtggctatt tattggaagg aacaaccgca
     1201 ttagaccgca ttcgttttat tgccgaacac gcagagcgaa aactcggcat tgaaggctat
     1261 gccgataaat tctatcacta tatggcaaga ggctacttct cgctttcttc gccaatttgg
     1321 tcaaactttg gcttagatcg tggcttaccg atttcttgtt tcggtagcta catcggcgac
     1381 tctatccatg aaattatggt gactaccgct gaagtgggca tgatgagtaa aattggcggt
     1441 ggtacttcgg cctactttgg cgatattcgt ccgcgtggct cgttaattaa aaacaacggt
     1501 aaatcagacg gctcatttaa cttcagtaaa ttatttgaca ctgtgattga cgtgatttca
     1561 caaggaacat cacgcaaagg tcagtttgcc ggttatattg atattgagca cggcgatatt
     1621 gacgaatggc tggatattca caccgaaggc aacccaattc aattaatgta ttacggtgtg
     1681 tgtgtcggtc acgattggtt agagtcaatg aaagccggcg atccatacaa acgtcagctt
     1741 tgggcaaaat tgttacaacg taaaaccgaa accggtatcc cttatttatt ctttaaagac
     1801 aatgccaacg caggtcgtcc tgatgtatat aaagataaaa atatgacgat tcacgcctct
     1861 aacttatgta ctgaaattat gttgccttcc agcaacgaag aaagtttcgt atgctgctta
     1921 tcgtctatga acctactcta ctttgatgag tggaaagata ccgatgcacc agaaacatta
     1981 acctatttcc tcgatgttgt aatgagtgaa tttattgaga aaagtcaatc aattccattc
     2041 ttagaccgtg caaaccgctt tgcccgtcgc catcgtgcat taggtttagg cgtgttgggc
     2101 tggcacagct atctacaggc aaataatatt gcctttgaca gcttccaagc gatgcaaaaa
     2161 aacaacgaga ttttcaaaac gcttcaagca aaaaccttga aagcctcgca agaattggct
     2221 caacgcttcg gcgagccgga aattttagag ggctatggtc gccgtaatac tacattaatg
     2281 agtattgctc cgactaaatc cagtagcttt attttaggca gtgtgtcgcc atcggtagag
     2341 ccgtttaaat ccaactacta tgtaaaagat ttagcgaaga tcaaaaccgt gtataaaaac
     2401 ccgttcttag agaaattact ccaagaaaaa gggctagaca ccgaagaaat ttggacgtct
     2461 attttacaaa atgatggctc ggttcagcat ttggaacagc tttccgagca cgaaaaagaa
     2521 gtatttaaaa cctttgccga aatcagccaa ttaagcgtga ttcagcaagc tgctcaacgt
     2581 caaaaatata ttgaccaagg gcaaagtatt aatgtgatga tccacccagc cacaccggct
     2641 cgtgatctta accaattata cttaacagca gaagagctgg gcttaaaatc catctactac
     2701 caaaactcaa tgagtgcagc acaggtattt aaccgtaacc tattaagctg ctcaagttgc
     2761 gaagggtaaa taatgggaaa tttatcgcat acttcaccta atactattgt tgaagttgtt
     2821 ggtgaatttc ctgaaataac atctagtggg tatacctttg ataaaggtcc tattcaatta
     2881 agaatcggca aacatactgc tccaaataaa ggctttggtg taaagcatat tgaagccgag
     2941 catatgcaag aaattcttaa tctaggattt acatcagtta atgaatttgt caaagctatc
     3001 atagtagaaa acgctaaaat tttttgcgaa ttctcagatt taaaaggcaa tcatcgccct
     3061 attattctga aagcaagtat tggcattgtg gttctagagc gtaagttttt ggaaagcggt
     3121 acgatatatt cagttgtaac cgcttataga agaacaaatc cccacggaat acaaataggc
     3181 actatgaaat aaagtacgtt agtgttataa tcagttccac gcaagagcat ttgtagaaaa
     3241 taacaggcgg atttggtttt ctactgtggg cggcaggttt ccgctaacct gtaatagcta
     3301 tttaattttt atattaaatc ctgaacttga aacagactaa gggattgctg cggtagctaa
     3361 gaatacaaac ctctctataa tcatatagag aggttttttc ttattgatga gcacaagtta
     3421 agataattat ttactctccc gacataactt caaggtagct tgaatcagct caaaagctat
     3481 tgtgccttgt tgtgggattt caggtaagct ttcctcacag tcgaaccatt ttgcatcgca
     3541 gatttcttct tcctgtagct gaatttcacc gctttcataa tccgctaaaa aacctagcat
     3601 taatgaattg ggaaacgccc aaggttggct tccaaaataa cgcacatttt tcactttaat
     3661 gcccgtttct tcaaacactt cacgatgcac cgcagtttct accgcctcac cggcttcgac
     3721 aaaaccggct aaagtggtat aaattgtgcc tttatggcgt agatgattgg ctagtaggat
     3781 ttgtctgcct tttcgcaccg ccacaataat tgacgggcta atcgttgggt aagctcgatt
     3841 gccacacgca ttgcagtaaa ttgcaatttc atcgcttgcc agtatggttt tctcgccaca
     3901 ttttccgcaa aattggtgag tctgaaagaa atggttaagc gaaacagctc gatgcaacaa
     3961 atgagacagt tcgggtggtc ggttaatttg gcttcttaaa taagcaaact ctcgctgatt
     4021 atccgattct aacgccttca ccaaataagc cggcgagcct tgatattgcc cgatggttaa
     4081 tttctcacgt ccacttaagc ccagctcttc cgcacttccg aatggaattt ccccagcctc
     4141 caaggcaata tcaaaatcgc tgacgataat ccaatatcct ttattcatct ttcaatccta
     4201 attgtgtaaa caacttacgt ttttcatttt cagatagcac ttgaaactca ccacagccta
     4261 aattgcctaa tctaaactgg cctatcccaa cacgaattaa ccgtaaagtc gggaaaccga
     4321 tatgtgcagt cattcttctg acttggcgat ttttcccttc agaaataatc aattctatcc
     4381 agctggtcgg aatggttttc cgctcacgaa tttgcggggc gatatgccaa gcaaaatcgg
     4441 gcgttgctat tgctctgact ttcgcgggct tggtcaaacc atcttttaac tccacccctt
     4501 ttgctaattt ggcaagatct tccggttgtg gaacaccctc cacttgtacc caataggttt
     4561 tctgcttgtc aaatttcggg tgagctaaac ggtgctggat ttcgccatta ttagtcaaaa
     4621 gcaacaatcc ttcactgtct ctatctagcc gcccgaccgg gtaaatattg ggcatcgtaa
     4681 taaaatcttt tagcgttttt cgcccctgtt catcggtaaa ttgggttagt acatcataag
     4741 gcttattgag taacacaagg gtggtttccg caaaggtaag cggtcgtttt tgcggatttt
     4801 tttgcaaatt tttagcgaaa tttgaccgct tgtttgtcat tcttttaaag gttggttgtt
     4861 tcattttttc aggttcgccc acgcaacaga aagtaaaata attaagccac cgataatcat
     4921 tttaagggtt ggcacttcat taaagcaaag ccacgcgatc acaatcgcat acaccggctc
     4981 gagggaaata atcattgagg cagtacgggc gttgatggta tcaaggcttg aaataaacag
     5041 cgtataggca agggttgtac ataaaaaacc gatacagaaa atccaaaacc aatcttgggt
     5101 ggaaacgctt ggaaattcag tgatggagag aggcaacaga aaaagtgtag caaaaatata
     5161 ctgccaccag cttgcttgca caccggaaat tttgctcatg gtacggcgat tcgctaccgc
     5221 caaaatacca tacaccaaag cagataacac gccccacaat aaaccttgag tggcttgatt
     5281 accaaaagta aattcagggg taactaaaat taaaccaacc gtgatggcaa ttaatagcac
     5341 cacttcacga aagcgtaatt tttcacggaa gaacaggctt tcaaataacg ccacaaatgc
     5401 cggaaagctg gcaaagccta aggttgctac cgccacacca cctactttaa ccgccacaaa
     5461 aaaagtaacc cagtgggcag ctaataaagc tgcagaaaat gcaagttgag ccatttgctg
     5521 taagttgagc tttacaagcg gttgtttttt ccataaaaaa tacaaagaga tgatagcaaa
     5581 agcaatcatc actcgcccaa gcacaatggt ttcagccgag ctttgaatta atgctccgaa
     5641 gatcaccgag gcaccaaata aaaccgctgt gccgtgtact ttaagtagtg caagtgttct
     5701 tttctccact atttgatcct attatgttga tcttgctcgt ccggcttgcg ttcaaattct
     5761 gcatcaaacg tgttgctatc ttgcgcagat gtagcagaaa aagacgaagt ttgggcggta
     5821 aaatgcataa acaccttatt ctttacgcta ttaattacga aggcttgaat ccattttcgg
     5881 ctaaagggta acacgcataa aatcgctaaa atatcactta aaaagccggg aataatcagc
     5941 aaaatgccgg ctacaataaa catcaccgag ttgccgactg cttcagtcgg tatcttgcct
     6001 tggcttaaat cttgcttgat ggaaaagagg gtataaacgc cccttaactt cacaatccat
     6061 aaccctaaaa atgaaatcac gaccagtaac aaaatcgtgg gtaacacgcc aatgatcgag
     6121 ccaatattca ccagcagcga aatttcgcaa tagatataaa agaaaatacc aaacagaatc
     6181 gctaaaatag gcatattatc ctcccaacgt tgcggcagcg tttgccgtca gattttctgc
     6241 cccattggct cgcatgacaa tattgtcttc ggtacgaatc ccgccaaagg ctttgaaagc
     6301 ctcaattttc tgccagttaa aggcagaaga taaggcactg tttttccaag gcttaagtag
     6361 catctcaata aaataaaaac ccggctcaat ggtaagcacc atattttcct gtagctcacg
     6421 ggtacaacgc aaacttgggt aaacctctgg aggagcttta tggctgcctc gggcattttg
     6481 ctgaaaaccg cccacatcgt gcacttgaat acccaataaa tgccctagtc cgtgtgggaa
     6541 gaacgtacgg ctaatccctt gttcaaaaat ttgctcggct gaaagatgaa taaattgatg
     6601 ttccgctaat aattgcgaaa tcatctgctg cattcgggtg tgataatgca ggtagttcac
     6661 cccaatactc agctcagcaa taatctgcaa cttcaactgt tccattttcg ccaccagctc
     6721 ggcaaattca gaaccgctgt caaaggcata ggtgcgggtg agatcggagg cataaccatt
     6781 taccgttgtg ccggcatcaa ttaaaaaact gtggcgtttt gcgtgggtgt caaaatctaa
     6841 cgccgtataa tgtagcaccg caccattttg attaatcgcc acaatattgc cataaggaac
     6901 attgagatca gattgctgcg tcgctttcaa atattcaagg ttgatttcaa attcgctttt
     6961 gccgacaaaa aatgcctctt ttgctacttg atgccctttt aaggctgaaa attgggcttg
     7021 gtaaatactt tcaatttcaa actccgtttt gatggagcgg gcaaaattca ggctattcag
     7081 cactttctgc ggattaatat ggctaaagcc taactttttg gctagctcaa catcttcacc
     7141 gataaaggca caagcggtcg gattttggat aaaggttgca atttcattct ctgctctcaa
     7201 caaaacccac tcaaattccg cagcgaaaaa ggcctccgtt ggcactttta gagtggaaac
     7261 ccaataatct tcaggggcat aaaaatagat tttcggctta tttttgccat ctaaaaataa
     7321 ccagcaattt tcagcttggg gatatgggaa aaagtaatta aaataagggt taattttaaa
     7381 cgggacggtt tgatcgtcta aaaataaggt ttttgccttg ccggcataaa tccataaacc
     7441 gtctaaaaag gcattttcca gcaagctttg cactgtctgt tgcaaacgtg cgagatgcgt
     7501 agagaataga tttttcataa ggaataaaat gactcaatta actgtaaata aagaattaga
     7561 taccttgggg ctacgttgcc cagagccggt gatgctcacc cgtaaaacaa tccgtaatat
     7621 ggaagaggga gaaattttgc atatcatcgc cgatgacccg gccactaccc gtgatattcc
     7681 gagtttctgc gaatttatgg atcaccaatt aattcaaaaa gaggtggact ccaccccata
     7741 ccattactgg attaaaaaag gcttggaata aaccacaagc ggtcgatttt agccataaaa
     7801 ttgcaaattt atgcacaaaa tcgaccgctt gttttaatta atgacggcga ggttcgtcct
     7861 caaaatcgtc attttcatca tcgaaaaatt caccgtcatc gccgtactca tcttcatcag
     7921 cattcggatc ttcaaagtag gttccccagc cctcatactc cgcaccggct ttttcaatta
     7981 atggcagtaa ctctttttgt tgtgcggtaa tgagatccgc attcaagtga atttcgctca
     8041 caatgtcgca tacaaaaatc actttaccat tttcgtcttc cacttcttcc gcttcggaaa
     8101 tttcatagcc cagcttatag gcatcaacta ctaatttttc caatttatca aaatcgtggt
     8161 gagcaacgtg gtgttcaata atataaaggg cttcagggtc tgaaccatcg gctaataatg
     8221 atgaaatggt ttcatcggtt tctgtgcgta attcatcgag attgtacata ttgaattcct
     8281 tacttattct gtgattaatt ttggtgcaaa ccagctatct aatttgttcg acagcttatc
     8341 aataccgatt ttattcagtg cggaataagc ctctacttgg atatcacctt ggaatggtaa
     8401 aatcgcttct cttaccattt ttacctgctt agagcgtgcc gattggctta acttatccgc
     8461 tttggtcaac agcagtaaca ccggcaagtt ggctgacact gcccattcaa tcatctgttg
     8521 atctaaatct ttcaacgggt ggcgaatatc cattaaaatc accacaccgc ctaaacattc
     8581 acgcttttgt aaatactcgc ctaatgcttt ttgccactgg attttcatct gttcaggtac
     8641 tgctgcatag ccatagccag gtaaatccac taatttacaa ttcgtttcaa cctcaaacaa
     8701 gttaatcaac tgcgttcgcc ccggtgtttt ggaagttcgg gctaaacttt tttggttagt
     8761 taaagcgttc aaagcagtcg atttaccggc atttgaacgc ccggcaaaag caatctccac
     8821 acctgtatct tcaggtaaat gacgaatatc cggtgctgaa gttaaaaaat gggttttatg
     8881 atagtttaat ttcattttat tctctaaatt taaaagataa gccttgctcg ccatattgat
     8941 tcggttcagg attaccggca aatacacccc attctaaaaa gagcaacatt ccaataaatg
     9001 ccggcatcac ctgtccaagc aatatctgca taattccttg tgaataagga gctgcaagat
     9061 aacaaataat cggcactaat gccattaaca gggcttttgc cgaacgattt cggtcgtgta
     9121 atcgtttaat aataatagca gacaggctaa atcctgtaat tataagcggt agcacactca
     9181 ataaagacaa ttcagccaaa tttatccaca tagcaaccat aaacaggaaa agaaagtgga
     9241 ttccaaatcc aatccaaaaa cctcgtctat ttagcctacc gttaaaacta aaaagtgctt
     9301 tataccaact cattttctac cctaaagtta catcaagtac catcattact acaaagccta
     9361 acatcaggct taaagtcgca atatcagtat ttcccgaact ttacgattcc ggaatcagtt
     9421 cttctacgac cacaaaaatc atcgctccgg cagcaaaggc aagagcataa ggtaaaatag
     9481 ccgtcatcga cagcacaaaa accgccccaa tcaccgccgc aataggctca accactgctg
     9541 acatagagcc ataccaaaat gctttcttcc gactatgccc ttcgcctcga attggcaatg
     9601 caagtgacga gccttcggga atgttttgta accctattcc gattgccaaa ccgatagctc
     9661 ccataatgga agcatctacg cctgaaactt gggttgccaa agcaccgaaa gccaccccta
     9721 tggctaatcc ttctggaata ttatgaatgg taatcgcaag aaaaagcaaa gtagattttg
     9781 ataagccttg tttaagttga tcatttcctt cagcttgctc aatcggctta ctcaagtgca
     9841 aatgcggcac aacatagtca attaatcgaa taaaagctcc accggcaaga aagccaatcg
     9901 ctgcaggcag ccaagctaaa gagccataat ccgcctcggc atattctaaa gaaggtgcaa
     9961 gcaaagacca aaacgaggct gcaatcatta cacccgcggc aaagcccatc atactgtcta
    10021 ataattttcg attaaccgat ttaaaaaaat agacaaatga cgaaccgaaa atcgtacaac
    10081 cccaagtaaa taaacccgct aaaaaagctt gccatattgg agaaagtgaa aggaaatatt
    10141 caaacaagaa atagtaccag ctaaaataaa tattggctca ttctatcaaa gattcagggt
    10201 tattaatata gtgtagccaa aggctcaacg aagatttcac ttgtaaaact tagcaagaaa
    10261 ataaccgctt gcatttccct ttcataaata caatgaaaat cctaacaagc ggtcattttc
    10321 cgtgagtttt ttatctttac cacaacaaca aaaaaccgcc tgtatctcta caggcggctc
    10381 tttcttggat tacttgtact ttgtttattt gtacttattt tgcttttgct taagttttcg
    10441 cttttgtaac ttttagcttt cgcttaagct cgcttaaatt aaaacccgac gatgctctac
    10501 tctcacatgg cgaatcacca cactaccatc gacgttactg cgttttactt ctgagttcgg
    10561 tatggggtca ggtaggacca cagcactctt gtcgtcggga aaattctttt ctatttttga
    10621 atttctttaa gttaacttcc taatctaact cttagttcac tttaatagtt agattaactt
    10681 ccttaacttc aattgatttc ttctctagtt tcgttcttct tctcaataca aaaacaagcc
    10741 taaaaacatt tgagcgttgt atagttaagc ctctcgggca attagtactg gttagctcaa
    10801 tgtctcacaa cacttacaca cccagcctat ctacgtcgta gtctccaaca acccttacac
    10861 acttatagtg tgggagaact catctcgagg caagtttcgt gcttagatgc tttcagcact
    10921 tatctcttcc gcatgtagct acccagcaat gcctctggcg agacaactgg aacaccagtg
    10981 atgcgtccac tccggtcctc tcgtactagg agcagcccct ctcaattctc caacgcccac
    11041 ggcagatagg gaccgaactg tctcacgacg ttctaaaccc agctcgcgta ccactttaaa
    11101 tggcgaacag ccataccctt gggacctact tcagccccag gatgtgatga gccgacatcg
    11161 aggtgccaaa caccgccgtc gatatgaact cttgggcggt atcagcctgt tatccccgga
    11221 gtacctttta tccgttgagc gatggccctt ccattcagaa ccaccggatc actatgacct
    11281 gctttcgcac ctgctcgact tgtctgtctc gcagttaagc ttgcttatac cattgcacta
    11341 acctcacgat gtccgaccgt gattagcaaa ccttcgtgct cctccgttac tctttgggag
    11401 gagaccgccc cagtcaaact acccaccaga cactgtccga gaccgcgttc cgcaatcttc
    11461 gttagaacat caaacgttaa agggtggtat ttcaaggacg cctccacaat cactggcgtg
    11521 actgcttcaa aggctcccac ctatcctaca catcaaaatt caatgttcag tgtcaagcta
    11581 tagtaaaggt tcacggggtc tttccgtcta gccgcgggta caccgcatct tcacggcgat
    11641 ttcaatttca ctgagtctcg ggtggagaca gcctggccat cattatgcca ttcgtgcagg
    11701 tcggaactta cccgacaagg aatttcgcta ccttaggacc gttatagtta cggccgccgt
    11761 ttactggggc ttcgatcagg agcttctctt gcgataacac catcaattaa ccttccagca
    11821 ccgggcaggc atcacaccct atacgtccac tttcgtgttt gcagagtgct gtgtttttaa
    11881 taaacagttg cagccagctg gtatcttcga ccggttcaac cttcatccgc aagggactac
    11941 aatctacgcc ggcgcacctt ctcccgaagt tacggtgcta ttttgcctag ttccttcacc
    12001 cgagttctct caagcgcctg agtattctct acctgaccac ctgtgtcggt ttatagtacg
    12061 gtttataata acctgaagct tagtggcttt tcctggaagc gtggtatcgg ttacttcatc
    12121 tccgtagaga ctcgtcatca cttctcggtg ttaaggaaga ccggatttgc ctaatcttcc
    12181 cacctaccgg cttaaacaga catccaacag tctgctaacc taaccttctc cgtccccaca
    12241 tcgcagttat ta
//
LOCUS       DANLUT010000064        12242 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLUT010000064 DANLUT010000000
VERSION     DANLUT010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12242
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            30..2120
                     /locus_tag="PXB38_001363"
     CDS             30..2120
                     /locus_tag="PXB38_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL5353684.1"
                     /translation="MLISLIFSNGICRIPNLEHFLPDCRIIRIPSWRKKLGNKAKVDQ
                     IIGWGLRPSAVGARAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDVGIYYDT
                     TCPSRLEKFLLEQPLQDQEQIKLAEKALSQILTYQLSKYNHALDFSEIPSIKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YADRVRIITEDVNPASLIKWCEKVYCVTSQMGFEALLLGKKVVTFGVSWFAGWGVTDD
                     RHNSVQLLIQQKRRQARSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIEYLHKATILN
                     RRLSGNVYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLAENAKILVWSNGK
                     PEIIQFAKENHIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENPSRLEQIL
                     LEAEDFSENDLSYAEALRQKLVATHIGKYNVGSGEVQVNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            2143..3375
                     /locus_tag="PXB38_001364"
     CDS             2143..3375
                     /locus_tag="PXB38_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5353685.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYVELPVVSEPEKVAK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYKHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPIFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3456..4517
                     /locus_tag="PXB38_001365"
     CDS             3456..4517
                     /locus_tag="PXB38_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5353686.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGLEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHLAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNLVQCIE"
     gene            4668..6320
                     /locus_tag="PXB38_001366"
     CDS             4668..6320
                     /locus_tag="PXB38_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL5353687.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAAGGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKWPKAEISYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            6373..7305
                     /locus_tag="PXB38_001367"
     CDS             6373..7305
                     /locus_tag="PXB38_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDL5353688.1"
                     /translation="MAQKIILDCDPGHDDAIAMMLAWGNPNIDLLAVTTVVGNQTLEK
                     VSRNALAVAEIAHICNVPFAKGCARPLVREVENAPDIHGDSGMDGLVLPESTRQFEKK
                     HAAQLIIDLIMSHPEKSITLVPTGGLTNIALAARLEPRIIERVKEVVLMGGGYHTGNW
                     SAVAEFNIKIDPEAAHIVFNAGWKVTMVGLDLTHQALATPDVVERFKALNSKSGQFVV
                     ELLAFFAKMYKQAQGFDAPPVHDACAVAYVIDPSLIEVQQVPVNIELTGTHTLGMTVA
                     DFRYPPKQCNTWVAKKLDKSRFWDLVIESVKNLP"
     gene            complement(7327..9408)
                     /gene="recG"
                     /locus_tag="PXB38_001368"
     CDS             complement(7327..9408)
                     /gene="recG"
                     /locus_tag="PXB38_001368"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL5353689.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQACKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(9412..9840)
                     /locus_tag="PXB38_001369"
     CDS             complement(9412..9840)
                     /locus_tag="PXB38_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5353690.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(9840..10127)
                     /locus_tag="PXB38_001370"
     CDS             complement(9840..10127)
                     /locus_tag="PXB38_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5353691.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            10291..12174
                     /gene="htpG"
                     /locus_tag="PXB38_001371"
     CDS             10291..12174
                     /gene="htpG"
                     /locus_tag="PXB38_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL5353692.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTEQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFSDPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMCGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
BASE COUNT         3536 a         2402 c         2763 g         3541 t
ORIGIN      
        1 tttaataaat ttaaagataa ttattaagta tgctcatttc ccttattttt tcgaacggaa
       61 tttgtcgtat tccgaattta gaacattttc tacctgattg tcgtattatt cgaatacctt
      121 cttggcgtaa gaaattaggt aataaggcta aggtagatca aatcatcggc tgggggcttc
      181 gtccttcagc ggtgggagca agagcttatg cacaaaaaca ccaacttcct tatattgcat
      241 tagaagacgg ctttttacgc tcattaggct tgggtgtaaa aggctatccg cctttttctc
      301 tagtgtacga cgatgtcggg atttattacg atactacttg tccttcccgt ttagaaaaat
      361 tcctgcttga acagcctttg caggatcaag agcaaattaa gcttgcagag aaagctttat
      421 ctcaaatctt aacttatcag ctttctaaat ataatcacgc attagatttt agtgaaatcc
      481 cctctatcaa agaaaaaatc gtattagtta ttgaccaaac ctttggtgat atggcggtga
      541 aatatggcca agcgagtgaa gtggatttca ataaaatgtt ggaaacggca atcagtgaga
      601 atccagaggc tcagatttgg gtgaaaactc accccgatgt attaagtggc aagaagaaag
      661 gctatttgac cgatttgcct caatatgctg atagagttcg tattattact gaagatgtta
      721 atccggcaag cttgattaaa tggtgtgaga aagtctattg cgtaacttcg caaatgggct
      781 ttgaggcatt attgttaggt aaaaaagtgg ttacctttgg tgtgtcgtgg tttgccggtt
      841 ggggggtaac agatgatcgg cataactcag ttcaattatt aatccaacag aagagacggc
      901 aagcacgctc attgttacaa ctattttatg cagcatattt tgattacagt cgttatatta
      961 atccgaatac gggtgaaaaa ggctctattt ttgatgtgat tgagtatctg cacaaggcga
     1021 caatactcaa ccggcgttta agcggaaatg tatattgtat aggtatgtca ttatggaaac
     1081 aggctgtcat taagccgttt tttaatttgc ctcaatgccg tttacatttt gtgcgttcgc
     1141 taaattcttt gaaaaaacga ccgcttgcag agaatgctaa aattttagtg tggagtaatg
     1201 gtaagcctga aattatacaa tttgcgaaag aaaatcatat tccactgttg agaatggaag
     1261 atggttttat ccgttcggtt ggacttgggg caaatttagt tgcgccactt tctttggtag
     1321 tagatgattt aggtatttat tttaatgcag agaatccttc ccgtttggaa caaattttat
     1381 tggaagcgga ggatttttct gaaaatgatt tgtcttatgc tgaggcatta agacaaaaat
     1441 tagtggccac ccatattggt aaatataatg tcggtagtgg tgaggtgcag gttaatgccc
     1501 aaggcaaaaa aataatttta gtaccggggc aggttgaaga tgacgcttcg ataaagtccg
     1561 gttctccaca aattaaaaga aatctggatt tactgaaaaa agtgagggaa ttaaacccta
     1621 gtgcctatat tatttataag cctcaccctg atgtggtaag tggtaatcga gtcggtcaga
     1681 ttcctacggc agaaacacgc aggtttgcgg atcagatggt ggataatgcc aatattttag
     1741 attgtatttt aattgcagat gaagtgcata caatgacatc tttagccggt ttcgaagcat
     1801 tattaagagg taaaaaagtg cattgctacg gattaccttt ttatgctggt tggggattga
     1861 cggaagatag attgaagtcg gcacgcagag gtaaatcttt gacattatct cagttaattg
     1921 ccgcaacatt gatatattac cctctgtatg ttgatcctat aagcaggcag tttattgatg
     1981 ccaatcaagc gattcatata ttgtcacaac agaaacgaaa cctaaccaat caaaggatta
     2041 aacgttcttg ggtgagtaaa caatatggaa aattacagca tctttatcgt gcgtttaaat
     2101 atgcttccca cactaaataa gcgtagaggg taggaaatta agatggaaca ttatttagat
     2161 gagctaatca tcaatagcca gagaatttta ttgttacaag gcccgatagg ctcttttttc
     2221 actgagtttg cccgttggtt agaaagtgag caaaaagagg tcttcaagtt aaattttaat
     2281 ggcggagatg aatatttcta tccaaataat agcccgaata cttttcctta ctatgatagc
     2341 ttagataatt ttgaagccta tttaattcag ttttgccaaa ctcatcaaat agataatatc
     2401 ttatgttttg gcgataatcg ttattatcat aaagtggcta aaaacgtttg cttgaagtta
     2461 aagttggtct tttgggcgtt tgaagaaggg tactttaggc cagaatatat tacgttggaa
     2521 aaatggggtg taaatgcttt ttctccaatc ccgaaaaatc acactttctt tttgccttat
     2581 gtcgagttac cagtagtcag tgaaccagaa aaagtagcta aaggctttag atgtatggcg
     2641 ggaaaagcaa tcccgtacta ttggaatgcc tataaaaaac gtaaagcata cgcaaaatat
     2701 aagcatcatc gttttctgaa tctcaaatac taccttaatt tatggacaag gtcgggaatt
     2761 aagcgaatat gttattggtt acatgataaa ggatttgcca agcgggtaga aaaaggagag
     2821 tttggtgaat ttttcattgt gcctctacaa gtttatgatg acactcaagt gaggattcat
     2881 agtgaacaaa aaagtgtaga gcgtttttta agggaagtgc tgaattcctt tgccaaattt
     2941 gcaccggcac atctcaattt aattattaag catcacccga tggatagagg atttatagat
     3001 tataaaatgg tgatttatga attcttagag caatatcccc aattaaacgg tagagttttt
     3061 tatattcacg atgtgccgtt acctatcttt ttacgttatg ggaaaggaat ggtgacttta
     3121 aattcaacca gtgggctttc tgcattgctc cataatatgc cggtcaaaac cttaggtaga
     3181 gccaattatg attttgaggg attaaccgat aaacagccat tagatacttt ttgggctaat
     3241 cctcagccac ctaattcgga agtatttaaa ggctacagac aatttcattt acataaaacg
     3301 catattaacg gtaattttta ccataaatcg attttgcgtt atccttataa ttgggaaaat
     3361 gaagcacaca ggtgatggaa aatattaaaa taagtaatat cttatagcta aattattgtg
     3421 ttattattac acctattgtt aaaagagggg gcattatggc tatttatgca atatggaata
     3481 ataaaggtgg ggttggtaaa agttatttaa cttttcaaat cgcttgtgag tatgcaaaac
     3541 aatacccagc aaaaaaagtt ctcgttgttg atttatgtcc tcaagcaaat tcatcatcta
     3601 tgctattagg cggccttgaa aaaggtgagc aagagttagc aaaaattcat tctcaagtaa
     3661 acaagaatac tatttcagga tatatttcag aaagattagt aagtccttac cgttctatta
     3721 atagtgcaac gaaatatgta actcaagtta gcactataaa tgaatatgta ccaaaaaatg
     3781 tttatcttgt tgttggtgat gaggaattag aaatccaatc atctggtatt ttacatgctt
     3841 cccaagctgt tcatgttcct gattcttggc ggctagtgca tctttgggtg cgtgatttag
     3901 tttctgatat acagaacgct tgggataatg atgataacgt tgtatttatt gattgcaatc
     3961 caagtttcac tatttatact gaattagcgt tggctgcttc agatagattg atcatccctt
     4021 tttccgctga tggttcatca aaacgagctg ttaagtctgt attatctcta gtatatgggg
     4081 ttaaaaggca ctctggggat gtcagctctc atttttatac agaatctcaa aagagtaagt
     4141 tagcattacc tcaaatttat atgtatgtag gtaatagatt aacgataaat gccaaagcat
     4201 cagcaaccgc atttaaaaca gttgtagagg aaataggtga tgaaatctat aatatatgga
     4261 aaactaatgc taatttgttc tgtattcacc tagcaggtgt tggtactcct acaaataaat
     4321 caagcttcag aaaaatgttt cagtatgagg tgagagatgc aaatacagca tctgttgttt
     4381 caggtgcttt aggtattccg attagtcgct tatcatcagg aaaaagagat gttttaggta
     4441 aaaatgtaat ggtgaatcag tcacaattag atgctcaagt tcctaacatt caaaatcttg
     4501 ttcagtgtat agaataaaga aaaatagcgt atattaagta cgctattttt tatttctgac
     4561 aaatcttttt atttgatagc tcgatcacaa aaaagaaata tctcctttta aataaaagga
     4621 ctttgggcta atctaaacag agtttttaaa ttacatagga gtaaaaaatg actattttcc
     4681 aagttgcaca aaattggtta gcccaagacc cggatgcaga gacccgtgcg gaattagagc
     4741 agttaattca agcggcagaa tcggacgaga aagcaaaagc agaattaaca gcccgttttg
     4801 acggacgttt acagtttggt acggcgggtt tacgtggtcg cttacaagcg ggttcaatgg
     4861 gtatgaaccg tgttttggtg gcacaagctg ccggcggttt agctgggttt attaaaggtt
     4921 atgataaaga gccgtcaatt gttattggtt atgacggtcg taaaaattcc gatgtgtttg
     4981 cccgtgacac cgctgaaatt atggcagcgg caggcattaa aacgtacctg cttcctcgca
     5041 aattgccaac accagtgctt gcctatgcga ttcaatattt tgataccaca gccggtgtga
     5101 tggtaactgc cagccacaac ccaccggaag ataacggcta taaagtttat ttaggtaaag
     5161 ctaacggtgg cggacaaatt gtttcgccgg cagataaaga aattgctgct ctgattgata
     5221 aagtagcagc aggcgatatt cgtgatttac ctcgtagcca agatttcacg gtgttagacg
     5281 atgaagtggt aaatgcttat attgagaaaa ccgcctcact agccaaatgg ccaaaagccg
     5341 aaataagcta cgtttatact gcaatgcacg gtgtgggcta tgaagtgtta agcaaaacat
     5401 tagaaaaagc cggcttaccg caaccgtatt tagttagtga gcagattcag ccggacggtt
     5461 cgttcccaac ggttaatttc ccgaacccgg aagagaaagg ggcgttagat ttagcgatta
     5521 aattggcgaa agagaaaaat gccgaattta ttatcgccaa cgacccggat gctgaccgtt
     5581 tagcggtagc cgtgcctgat gctcaaggca actggaaacc actgcatggc aatgtaatcg
     5641 gctgtttctt aggctggtat ttagccaaac aattccacgc acaaggtaaa caaggcgtgt
     5701 tggcttgctc gttagtatcc tctccggcgt tagctgaaat tgcgaaaaaa tatggtttaa
     5761 gctcggaaga aaccttaacc ggctttaaat atatcggaaa agttgaaaac ctattatttg
     5821 gctttgaaga agccttaggt tatttggttg acccagacaa agtgcgtgat aaagacggca
     5881 tttccgctgc cattatgttc ttagatttag tgtgcagcct caaacaagaa ggtaaaaccc
     5941 ttgcggatta caccaccgag tttgtacaag agttcggggc ttatgtaagc ggtcaaattt
     6001 cgatcagagt ttgtgattta gccgaaatcg gcaaattaat gacggcgtta cgcaacaatc
     6061 ctccaagcga aattggtggc tttaaagtgg ctgagtttat tgaccatacc aaaaccacac
     6121 gccaaaatga cattttagtg tttgtgttgg aaaatggcag ccgtttgatt gctcgccctt
     6181 caggtactga gccgaaaatt aaattctatt tagatgctcg tggcacagac gctgaaaacg
     6241 cagagcaagt gctggctcag tttgacgaaa gtgtgcgttc gctgcttcgc caagaagaat
     6301 acggcaaaca agattgctaa tggcattaat tgagggggag cttaggctct ccctttttta
     6361 aaggagacaa taatggctca aaaaattatt ttagattgtg atccggggca tgacgatgcg
     6421 attgcgatga tgctcgcttg ggggaatccg aatattgatt tgttggcagt gactacggtg
     6481 gtaggcaatc aaaccttaga aaaagtatcg cgtaatgcgt tggcggttgc ggaaattgct
     6541 catatttgca acgttccttt tgccaaaggt tgtgccagac cgctggtgcg tgaagtggaa
     6601 aatgccccgg atattcacgg tgattcggga atggatgggc ttgtactccc tgaatctacc
     6661 cgacaatttg agaaaaaaca cgccgctcaa ttaattattg atttgataat gtcgcacccg
     6721 gagaaaagca ttaccttagt gccgaccggt gggctaacca atattgctct agctgcccgc
     6781 cttgagcccc gtattattga aagagtgaaa gaagtggtgc tgatgggcgg aggttatcac
     6841 accggcaact ggagtgcggt ggcagaattt aatattaaaa ttgacccgga agctgctcat
     6901 attgtgttta atgccggttg gaaggtgacg atggtcggct tagacttaac tcaccaagca
     6961 cttgcgaccc ccgatgtggt tgaacgcttt aaggcattaa acagcaaatc ggggcagttt
     7021 gtggtggaat tgctggcgtt cttcgccaaa atgtataaac aggctcaagg ctttgatgct
     7081 ccaccggttc acgatgcctg tgcggtggcg tatgtgattg acccaagcct gattgaagtt
     7141 cagcaagtgc cggtcaatat tgagctaaca ggcacgcata cactgggtat gacggtggcg
     7201 gatttccgct acccgccaaa acagtgtaat acttgggtag caaaaaaatt agacaaatcc
     7261 cgcttttggg atttggtaat tgaatcggtg aaaaacctgc cgtaatctaa ataacccgct
     7321 tgccggttaa gcgttggtat attccgcctt gttgtctaac caacgcttaa ttaacgcctc
     7381 tgcaagcggt tgattttcgc taataatttg cttggcgtaa cgttgcacca gcggaatcat
     7441 tttgcggtct cgcattaaat ccgccacctt aaattctgcc attccggtct gttttgtgcc
     7501 gagaatttca cctgtgcctc gaatctccaa atctttttcg gcaatgtaga aaccgtcttg
     7561 gctatcacgc atcacttgta accgcttgct ggaaattttc ccgagcggcg gtttgtacat
     7621 taagacgcaa tgcgaggcgg ttgcccctcg cccaacacgt ccacgcaact ggtggagttg
     7681 agccagcccg agtcgttcgg aattttcgat aatcattagg ctagcattcg gcacgtccac
     7741 tcccacttca attacggtgg tcgcaaccag caaatctaaa ttcgctgcct taaattccgc
     7801 cataatcgct tgtttttcct gtggtttcag ccgtccgtgt actaacccga tgcgtaaatc
     7861 cggcaaggct cgctgtaaat cttcggcaat cgctgccgcg gcttgagcct ccaacacttc
     7921 gctttcatca atcagggtgc agacccaata ggcttggcgg tgttcttgct tacaggcttg
     7981 gtacacccgt tggacgattt ctgctcgccg atcttcagaa atcaccacag tcgtgattgg
     8041 cgttctaccc ggtggcagtt cgtcaatgat tgaggtgtcg aggtcagcat agaccgtcat
     8101 tgccagcgtt ctcggaatgg gggtcgccgt cataatgagc tgatgcggat agttattttc
     8161 tttcgctcct ttttcccgca aggtcagccg ttggtgtacg ccaaaacggt gttgttcatc
     8221 aataatcacc aacgctaaat ggtgaaattc cacattgtct tggaacaggg cgtgagtgcc
     8281 gataatcatc tgcacatcac cgtttttgat tgcctcaagt tgtgcggttc tcgccttgcc
     8341 tttcacttta ccggcaagcc agccaacctc aatcccaaag ggattaagcc agttggcaaa
     8401 attattggcg tgctgttcgg caagaatttc ggtcggtgcc attaatgcca cctgcttgcc
     8461 gttatcaatc gctaatagtg ctgccaaggc ggctactaag gttttacctg aaccaacatc
     8521 gccttgtacc agtcgcatca tcgggtgtgg tttggcaaga tcttgctcaa tatctgcggt
     8581 tactcggctt tgtgcgtgag taggcttaaa aggcaaactg tcgagaaaac gctgttttat
     8641 atcggtttgg taagtaagtg cctctgcata ttgctgtttt acccctaaac ggagttgctg
     8701 catcgctaaa ttgtgtgcca gcagttcttc aaaaatcagc cgtttttgag cagggtggtc
     8761 acctttttcc aagacttcgg cagaaatcgt cggcggtggg cggtgcaata actgcaacgc
     8821 ttcttttagg ctgtatttgt gcggattgta ttcatcaggc aacagctcgg cgactttcac
     8881 tttctctaat aaagcgaggg cttgctcggt taatttccgc agcgaggctt gttttaaccc
     8941 ctcagtggtg gagtaaatcg gggtcagggt ttcagccagt acaagcggtt gattatcccg
     9001 aataatttga tattcagggt ggtgaatttc cgccataaat cgcccacgct taatttcccc
     9061 aaaggctttt acccgaacgc cggtggcaag gctatttttc attccagcat tgaaattgaa
     9121 gaatttaagc ataattttgc tggtgctgtc ggagagtgta accgataaaa tcgggcgttt
     9181 accaaactgg acttcggtaa gttgtacata gccttcaatg gtggcaaagc tttccgggcg
     9241 aacatcagca atcggggtaa tacgggtgcg atcttcatac cgcattggca gatgaaacag
     9301 taaatcctgc acattattaa tgccgattcg acttaacttt tcggaaattg ccgctcctac
     9361 gccggaaagg gcggttaatg gcacgccgtc taataattgt tcactcatta tttatgcggt
     9421 ttcaaatggg ttaaataaac gcacatcaca acggataaaa tctttggtgt tgcgggtgac
     9481 taaaatcaga ttgtggtatt tggcggttgc cgcaatataa gcatcattta aatccatttt
     9541 attgggaata tggtactctg atgccaatag agcaatgtcg ttattcacca caaacgcttt
     9601 tgtttgataa gcctttaata cattattttc aaaccaatca tttaatcggt ctgattgttc
     9661 tttgtctttg cgggctttca gcaaaatacc tgttttgatt tcagataacg taatacagct
     9721 gatattggtc tggctaggat taacccctct cagccactgg cgaacattga catccatctt
     9781 gtcatttctt aacttataaa gctcggaaac tatattggta tcaaaaaggt agcgatacat
     9841 tactcatctc caaaatcaac aggtcttggt ttattgcttt tgcggatttc aaccaatgtt
     9901 tgttcaaact cttgccaaaa ttcatcgctc acatcctcat tttcggaaga ggcgaatagc
     9961 tcttcaaagc ttggctcgct aggctttttc tgctgataat ccatataact agacaccaca
    10021 ttgacgattt tgccccattt ggtaataaaa accggctctt tttctgccat ttttaacact
    10081 ttgctggcat tttgattaaa ttctctggaa gtaatggtta ttgccatatc gatctccaaa
    10141 atgtagtaaa aagatgagtg tattttatta aatgtagtaa tatctttcaa ttaattcgct
    10201 atttggcaac agatattttg caaaaaatct tgaaaatctg accacttgcc ccatctattc
    10261 cctgtttttt aatgaataaa ggaatacaca atggcaaata atcaagaaac ccgtggcttc
    10321 cagtcggaag tgaaacagtt attgcaactg atgatccact cgctttactc caacaaagaa
    10381 attttcctgc gtgagcttat ttccaacgcc tctgacgccg ccgataaatt gcggtttaaa
    10441 gccctttccg agccggcttt gtatgaaggt gatggcgaac tgcgtgtgcg tgtctctgtt
    10501 gatgaaacac tcggtacgat tacgattgcc gataacggta tcggtatgac ccgtgagcag
    10561 gtgatcgacc atctcggtac gattgcaaaa tctggtacca aagaattttt gaacgcactc
    10621 ggcactgagc aagccaaaga cagccagctt atcgggcagt tcggcgtggg cttttactct
    10681 tctttcatcg tggcggataa agtgacagtc aaaacccgtg ccgccggagt gcctgccgag
    10741 caaggcgtga tttgggaatc tgccggtgag ggcgattaca ccgttgccga tctggagaaa
    10801 aaagagcgtg gcacggaaat cattcttcac ttgcgtgagg acgaaaaaga gtttttaaac
    10861 gaatggcgtt tgcgtgagat tatcggcaaa tactccgacc atatcggcct ggcggtggaa
    10921 attcagacca atgaatacga tgacgagggc aaagcaagcg gtcaaaaatg ggaaaaaatt
    10981 aacaaagctc aagcgctttg gacacgctca aaaaatgaga ttagtgacga ggagtacacc
    11041 gaattttaca aacacctcag ccacgatttt tccgacccgc tgatttggtc gcacaataaa
    11101 gtcgaaggta agcaagaata caccagcttg ctgtatgtgc cgagcaaagc cccgtgggat
    11161 ctgttccaac gcgagcaaaa acacggcttg aaactctacg ttcagcgtgt atttattatg
    11221 gacgatgcgg aagtctttat gccgaactac ttgcgtttta tgtgtggctt gctcgacacc
    11281 aacgacctgc cgctcaacgt cagccgtgaa attctgcaag agaataaagt tacccaatcg
    11341 ctccgttctg ccttaaccaa gcgtgcgtta caactgctgg aaaaattggc gaaagacgat
    11401 gccgaaaaat atgcccaatt ctggcaagcg ttcggcgtgg tgctgaaaga gggcgtgggc
    11461 gaagactttg ccaacaaaca acaggttgca ggcttactcc gttttgcctc cacccagcgt
    11521 gatgacagcg aacaagcggt cagttttgcc gattatattg caagaatgaa agaggggcag
    11581 aaagcgatct acttcttaac cgcagacagc taccaagcgg ctaaaaacag cccgcactta
    11641 gagctgttcc acaaaaaagg cattgaggtg ctactgcttt ccgaccgcat tgatgaatgg
    11701 ttggttagcc acctcaccga gtttgacggc aaaccgctac aaagcattac caagtcggac
    11761 ttagacttag gcgagcttgc cgacaagcag gaagaagaga gccaaaaagc ccaacaggcg
    11821 gagtttggtt cgttcttaga acgggcgaaa ggctactttg gtgaacgggt caaaaacgtg
    11881 gtgctgactc accgcttaac cgacacaccg gcagtggttt ccactgacag cgatgaaatg
    11941 accacccaaa tggcaaaact gtttgcagca atggggcaac aagcaccaga agtgaaatat
    12001 acttttgagc tgaacccaga tcacccaatg gtgaaaaaag tagctgatct tgccgatgaa
    12061 gccgagttcg ccgattggat tgaactgctg tttgaacaag ctctgcttgc tgaacgaggc
    12121 acgttggaaa acccgacagc ctttattaaa cgggtaaata aattgttggg ctagccatta
    12181 ctaaaaacgg aaatctaggt ttccgttttt ccatattcaa tatataatgg aacaaaaatt
    12241 aa
//
LOCUS       DANLUT010000065        12116 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLUT010000065 DANLUT010000000
VERSION     DANLUT010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12116
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            34..1032
                     /gene="yiaK"
                     /locus_tag="PXB38_001372"
     CDS             34..1032
                     /gene="yiaK"
                     /locus_tag="PXB38_001372"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL5353693.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNRRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKTNGIPVDDTVWAKLQAL"
     gene            1157..1630
                     /locus_tag="PXB38_001373"
     CDS             1157..1630
                     /locus_tag="PXB38_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5353694.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNFAVFFPEDCHRTAIFDDTETIRKVVVKIAMSEIEEQR"
     gene            1627..2106
                     /locus_tag="PXB38_001374"
     CDS             1627..2106
                     /locus_tag="PXB38_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5353695.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            2107..3384
                     /locus_tag="PXB38_001375"
     CDS             2107..3384
                     /locus_tag="PXB38_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL5353696.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVAAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            3487..4473
                     /locus_tag="PXB38_001376"
     CDS             3487..4473
                     /locus_tag="PXB38_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5353697.1"
                     /translation="MKLFNLKTLVALVAGVAVMSGSAMAETSLHFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEIRKAFVEKHGDELLKKVDALAQ"
     gene            4547..5530
                     /locus_tag="PXB38_001377"
     CDS             4547..5530
                     /locus_tag="PXB38_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5353698.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSELYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            5661..7145
                     /locus_tag="PXB38_001378"
     CDS             5661..7145
                     /locus_tag="PXB38_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5353699.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVMVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMLLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            7340..8386
                     /locus_tag="PXB38_001379"
     CDS             7340..8386
                     /locus_tag="PXB38_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353700.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            8399..9508
                     /locus_tag="PXB38_001380"
     CDS             8399..9508
                     /locus_tag="PXB38_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5353701.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            9613..10503
                     /locus_tag="PXB38_001381"
     CDS             9613..10503
                     /locus_tag="PXB38_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL5353702.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIALLPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            10575..12044
                     /locus_tag="PXB38_001382"
     CDS             10575..12044
                     /locus_tag="PXB38_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL5353703.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPVVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         3356 a         2611 c         2923 g         3226 t
ORIGIN      
        1 actatttgaa atattgaggt attcaagatg actattcgag tttcctatga agaattaaaa
       61 gctcaattta aacgtgttct gttggctcgc aatgtgcgtg aagagattgc cgaagagtgt
      121 gccactgtgt ttgccgacac cactcaagcg ggtgcttatt cacacggggt aaaccgtttc
      181 ccacgcttta ttcagcagtt agagaacggt gatattgtgc cggaagccgt gccgactaaa
      241 gtgctttcac tgggggcgat tgagcagtgg gacgctcacc aagccatcgg taacttaacc
      301 gcaaaaaaaa tgatggacag agcaatggag cttgcatctg aaaacggcat cggcgtagtg
      361 gcgttacgta atgcaaacca ctggatgcgt ggcggttctt acggatggca ggcggcagag
      421 aaaggctata tcgggatctg ctggacgaac gcccttgcgg taatgccgcc ttggggggcg
      481 aaagagtgcc gtatcgggac gaacccgtta atcattgcgg tgccgactaa cccaatcacg
      541 atggtggata tgtcttgctc aatgtactca tacggaatgt tggaagtgca tcgccttgct
      601 ggtcgtcaaa cctttgtcga tgctggtttt gatgatgacg gcaacccaac ccgtgatccg
      661 gcaacggtcg agaaaaaccg ccgtctaatg ccgatgggct tctggaaagg ttcgggctta
      721 tcgattgtgt tagatatgat cgccaccttg ctctctaacg gtgaatccac tgcggcagtc
      781 accgaagata aagacgatga atattgcgtg tcgcaagttt atatcgctat tgaagtggat
      841 cgcttaattg acggcaaaac caaagacgaa aaactcaacc gtattatgga atatgtgaaa
      901 accgcagaac gtgccgaccc tgatgtggca gtacgtttac cgggccacga gttcacccaa
      961 attctagccg ataacaaaac caacggcatt ccggtggatg acactgtttg ggcgaaatta
     1021 caggcgttgt aattgcaaat tgaccggtag ggtgggcgta agcccacgca ttagacacaa
     1081 tcataagatg acgtgggctt acgcccaccc tacaagcggt catttttccg cagaatttta
     1141 caaaacggag gtatgaatgt tttttggtca tatttcacaa gttaaagcga atcgataccc
     1201 gccggcgatc caaattgcgt tgaactatct gaaaaatacc gattttgatg cgatggaagc
     1261 aggggtttac gaactcaaag gcagacaaat ttatgtgcag gtgttggatt tgaacaccaa
     1321 atcgaaacac gaatttcagc cggaagtgca tcgcaattac ctcgatgtgc agtatctaca
     1381 ccgaggcaaa gagataatgg ctgcggcggt ggataccggc accaatccga ttgcgatgga
     1441 atacaaccct gagcgggata ttcaatatta tcaatccgtt gccaacgaaa atgaatttcg
     1501 ctgcgttgaa ggcaattttg cggtgttttt ccccgaagat tgccacagaa cggcaatttt
     1561 tgacgacacg gaaaccattc gcaaagtggt ggtaaaaatt gcgatgagcg aaattgagga
     1621 gcaacgatga aagccttagc tcaattagtc ggaaaactgt tagaaatctt ggtggtggtg
     1681 attttatccg caatgtcgat tttggttttc gtcaatgtgg tactacgtta cggttttaac
     1741 agcagcatta gcgtgaccga agaggtgtct cgctatatgt ttgtttggtt ggcgttttta
     1801 ggggcggtgt tggcatttag cgaaaatcaa cacgttaaag tcacaatgct gaccgataaa
     1861 ttatcgccaa cggctcgtaa tatcttaagc gtagtcacag atttagcgat gttgttctgt
     1921 tgctacttaa ttgtggacgg tagctggatt caatttaacc tcaacctgaa taactttgcc
     1981 ccgatttcag gcttaccgca aggcatcact ttccttgcca gcacagtggc aggggtatta
     2041 atcggtttat taattattgc ccgcattgtg gcaacggttg gcgtgattgc aaaaggagaa
     2101 aaatagatga ctgtggtaat ttttctttcc gtcttgcttg gctcgatttt attgggcatt
     2161 ccagtagctt tcgccctgtt ggtctgcggt gtggcgttaa tgttgcattt agatctgttc
     2221 gatgcccaaa ttttggctca acaaattgtg agcggtgcag acagtttctc gctaatggca
     2281 attccgttct tcattcttgc cggtgaaatt atgaacgagg gcggtctctc caaacggatt
     2341 atcgacctgc cgatgaaatt agtcggtcat aaacggggcg gtttaggttt tgtggcaatt
     2401 ttagcggcga tgattatggc aagcctttcc ggttcggcgg tggcggatac cgcagcggta
     2461 gccgcaatgc tactgccgat gatgaaaacc accggttatc cgattgaccg ctctgccggt
     2521 ttaatcggta cggcagggat tatcgcccca atcattccgc caagcattcc gtttatcgta
     2581 tttggtgtgg ctagtggcgt gtccattacc aaactgttct tagccggtat tttcccgggc
     2641 attatgatgg ggatctgctt ggctgccctt tggtggtggc aggcaaaacg tttggattta
     2701 atgaccttct ccaaagcgac caaagaagaa ctttgcattt catttaaaaa cagtatttgg
     2761 gcgttattgt tgcctgtcat tattatcggt ggtttccgct cgggaatgtt caccccaacc
     2821 gaagcgggtg cggtcgcaac tttctatgcc ttgattgttt cactgtttgt ttaccgtgaa
     2881 atgaagttca aagatttata caaggtagtg ttggcggcag cgaaaaccac ggcagtagtg
     2941 atgttcttag tggcagcggc aaatgtgacc ggctggctga ttaccgtagc ggaattaccg
     3001 atgatgctca ccgagctgtt agagccgtta attgaaagcc cgaccacact cttattggtg
     3061 attatgttag cggtgtttat tatcggaatg gtgatggact taaccccaac cgtgcttatt
     3121 ttaacgccgg tattaatgcc gttggtggaa gaggcaggca ttgacccggt ttacttcggt
     3181 gtgctgttta ttcttaacac ctccatcggc ttgattacac caccggtcgg caacgtgcta
     3241 aacgtgatta ccggcgtgtc gaaactgccg ttcgaccaag cggctaaggg cgtaatgcct
     3301 tacctcgtaa tgatgatttg tttactactg ttgttcgtgt tcttcccgtc actggtgtta
     3361 gtgccgttaa gctggatgca gtaatggttt gaaccgaaac aagcggtcga attgacgcaa
     3421 aaatttacaa atttttttgg caaaacagac cgcttgcaac tcaattttta atcacaggag
     3481 aaccctatga aattatttaa tttaaaaacc ttagttgcct tagtggcagg cgttgcggta
     3541 atgagcggct ctgcaatggc agaaacctca ctgcattttg gttatgaagc cccacgttcc
     3601 gatacccaac acatcgccgc caaaaaattc gatgaattat tggcagcaaa aaccaaaggt
     3661 gaaattaaat taaaactgtt tccggacagc accttaggta atgctcaaac gatgatcagc
     3721 ggcgtgcgtg gcggtactat cgacattgaa atgtccggct cgccaaactt taccggctta
     3781 gagccaaaac taaatgtgat tgatattccg tttattttca aagatcgtga acacgtttac
     3841 aaagtattag acggcgaagt tggtcaaggc ttattaaaag atttagaagc ccaaggctta
     3901 aaaggcttag ccttctggga cgttggcttc cgtgctttct ccaactcaaa acaccctgtg
     3961 accaagccgg aagacatcaa aggcttaaaa gtccgcacca accaaaaccc gatgtacatt
     4021 caagccttca ccttactagg cggcaacccg gtgccaatgc cactttctga gctttacacc
     4081 gcactcgaaa cccgtgccgt tgatgcccaa gaacacccaa tcggcatttt ctggtcggca
     4141 aaactgtttg aagtacaaaa acatttaagt ttaaccaacc acggctacac cccgttaatc
     4201 gtggtgatga acaaagcgaa gtttgacggc ttagctcctg aattacaaac cgcattggtt
     4261 gaagccgcaa aagaagccgg tcaattccaa cgtgatctca acgtgaaaaa cgaaaaagag
     4321 atcatcgaaa aattacgcaa acaaggcatc gaagtgatcg aacaagtgga taacgccccg
     4381 ttcaaagcag cgattgaagc ggaaatccgc aaagctttcg tggaaaaaca cggcgatgaa
     4441 ttattgaaaa aagtggatgc gttagcacag taattgactt tattttagtc taaagctccc
     4501 tccgtttggg gggagttgtt gtatagactc tactatagga gagactatga aactgtttaa
     4561 tttaaaaact ttagccgctt tcgttgccgg ttttgcactg ttttcaaccg cacaagcaga
     4621 aacctcattc cgctttgcgt atgaagctcc tcgttctgat actcaacata ttgcagcgaa
     4681 aaaatttaat gatttgctgc aagaaaaatc ccaaaaaggg ctgaaattaa gcctcttccc
     4741 tgatagcacg ctcggcaacg cacaaacggc gattagcggt gtgcgtggcg gtactattga
     4801 tattgcaatg tccagctcct ctaactttac cgggttagaa ccaaaactga atgtgattga
     4861 tattccgttt attttcaaag acagagacca cgcctataaa gccttagatg gagagattgg
     4921 tcaaggttta ttaaccgcat tagaggctca cggtttgaaa gggttggcgt tttgggaagt
     4981 tggtttccga gcgttttcca actccaagca cccgatcacc aaaccggagg atattaaagg
     5041 cttaaaaatc cgtactaacc aaaacccgat gtatattcaa gccttctcta ttttaggtgc
     5101 aaatccggtg ccaatgccgc tttccgagct ttacactgca ctggaaacca aagcggttga
     5161 tgcccaagaa cacccaatcg gcattttctg gtcggcaaaa ctctatgaag tacaaaaata
     5221 tttcagcttt actaaccacg gttacacccc gttaattgtg gcgattaaca aagcgaaatt
     5281 tgatgcactg ccagccgagc aacaaaccgc attagttgaa gcggcaaaag aagccggaaa
     5341 ataccaacgc caacttaacc tagaaaatga gcagaaaatt atcgactcgc tcaaaaaagc
     5401 aggtattgaa tttgtggata acttagatac cacaccgttc aaagatgccg tatcggctga
     5461 aacccgcaag gcatttatcg agaaaaacgg tgatggctta gttaaagcca ttgatgcatt
     5521 ggcgaagtaa aaatagagct acaaagtgct cggttaaact aacctcacac gaatcgtgtg
     5581 aggtacaagc ggtcaaaatc cgcaaaatct ttacacatct ttcctcaaag gaggaacaaa
     5641 tggcacagcc cattttaagt atgcagcaca tcatcaaacg ctttggtagc catacggcgg
     5701 tgaatgatgt cagccttgat atccactcag gcgagatcgt tgccttactc ggtgaaaacg
     5761 gtgcaggtaa atcgacccta atcaaaatcc ttgccggtat ttatgaccgt gacgagggtg
     5821 atattctttt ccataaccaa aaaatccaat ctgcccacgc tattgagaaa ggcaacaaaa
     5881 agcccatcgc ttttatccac caagatttag gcctaataga atggatgacg attgccgaaa
     5941 atatggcatt tgtaatgggg ttccctcgca aatttggctt gattgactgg gcgaaagtgc
     6001 gagagcagtc gcaaaaagcc cttgattttg taggcattaa actctctgcc gacactcgag
     6061 tgtttgattt aagccgtacc gaaaaagcct tactcgccat tgcccgtgcg attgccgtca
     6121 atgcagaaat cttggtttta gacgaaccta ctgcttccct acctgcctct gatgtagagc
     6181 atcttttcac tgtgttaaac cgcttacgtt cccaaggtgt gggaatgatt tatgtgaccc
     6241 accgtttaga tgaagtgatc gccatttccg accgcatttt ggtgatgcgg gacggtttcc
     6301 cggttgcaga agggcaaacc aagctctatg acgtcaaagg cttggtcaaa gcgattgtag
     6361 gcgaagagag ccgtggcaga cagcgggtgg atttaccaac cgatactcct gaaattttaa
     6421 gcctgcaaaa tgtcatggtt ggcgacaccg gcccggtgaa tttccgtctg cacaaaggtg
     6481 agatgattgc ccttgccggc ttgcgtggag cagggcagga agaaatcggc cgcttattat
     6541 ttggggagcg aaccttagac aaaggcgaaa ttcagttaga caagcggtca tattctgcta
     6601 aagatccgca agatgcgata gccaaaggtg tggcattggt tgcgggagac cgcacccgtg
     6661 aaagcgtgtt tatgtcaatg actaccagtg agaacctgtt tatcaacccg gtactaagcg
     6721 gtcattcacc attaaaacgc tactcccgcc gtgaagagtg gggtgagagc tggtacaaat
     6781 tccaactatt cgatattcgt ccgaaaaatt tgtttattga tgccagtgcg ttatccggtg
     6841 gtaatcagca gaaaatcgtg ttggcacgtt ggatgctcct caatacgcct gttctgattt
     6901 tagaagaccc gactgccggc gtggatgtag gagcaagggc agagatttac gacttgctca
     6961 acaaagccct tgcagaaggg gtcgcaatta ttgtgatttc caccgacttt gaagagatcg
     7021 ctcatttgtg taaccgagca ttagtcttca accgagggga aattgccggt gaactactga
     7081 acgaagaggt gactttcgcc aatttgctgg cgttggcatc ggatagtcag tcgaaaaaac
     7141 aataacttac tctcgcccgc ttgcgggaga gagacagcta aaaatagcgt caggctattt
     7201 ttagcagaga gagggtaaac aagcggtcat ttttcttaaa aaatattgcg aaccctctcc
     7261 ctccgaaagc ctaacggctt tctcctccct ctcccgcaag cgggcgaggg gaaaatgcag
     7321 aattttaacg gagtaattta tggctcaaac aaacatcaaa tcaaccgcac tggaacaacc
     7381 ggtatctatc gcccgtgacg gttttatggc atggttttca caaatgtcca ctcgttatgg
     7441 cttactgtgg ttatgtgtgt tattggtgat tattttctca cttaccaccg aatctttcgc
     7501 ctcaatgctg acattaaatg cgattttaga aagtaaatcg aaaattgccc tacttgcttt
     7561 ggcagccaca actacaatga ttgtcggcaa aatcgacctg aacgtgggtt tcggtattgt
     7621 gttgtggcac attcttgtga ttactctgca agtccaatac ggcttctcgt ggtatatggc
     7681 gatcttaatc gtgttagtga ttgccgctct ttacggcttg ctgaatggga ttttagttgc
     7741 tcttgctgat atcgatagct ttgtggcaac acttggctca ggcacagtgc tttatgccgt
     7801 agcactctgg cactcgggcg gtcgccaaat tgtcggggat ttacccgatg aatttatcgc
     7861 actcaacagc acagaaattt tcggtatccc gatttctgct ttctatgtgc tggcagtggc
     7921 tatcgtaatg tggttggtga cagaacatac cccgaccggt cgttgtatgt atgcggttgg
     7981 tggcaaccca acggcagctc gcctaaatgg tatcaatatt aaaaaataca ccattgtgcc
     8041 gtttattgtc tctagtgtaa tcactgcttt cacaggcgta ttgatctctg ctcaacaagg
     8101 cgttggtcag gcaagtgtcg gtatggacta cttactgccc gcattggttg gggcattctt
     8161 agggagtacc actattcgcc cagggcgtat taacgtatgg ggaacagtgg tggggattgc
     8221 cattcttgcc atcggtattt caggtattca acaattcggt ggagcgttct gggttgagcc
     8281 actctttaac ggtgcaacac tgttactttc catcactatt gcaggctatg cccaacgcaa
     8341 acgcttgtta aatcaaaaag ctgtacagaa aaaatcgacc aactaagagg atttgattat
     8401 gaaaaaagca tttcgtacaa ccttaactgc aatcgcaacc ttaactgcta ttgctttcgg
     8461 aaataatgcg tttgccaatg acgacccgtt cgtacaagaa gcaaaacagc ttgtcgcagc
     8521 agctacggct aagcaagaaa aatgggacgg accgacaacc ggccctcaat tacaaaaaga
     8581 gaaaactgtg atttttattg cctctgatat gaaaaacggt ggtgtacttg gtgtgattga
     8641 cggaatgaaa gaagctgttg gcgtaacggg ctggaagtta gatgtattag acggtgcagg
     8701 tacggtaaac aaccaactcg ccgcacttaa ccaagcgatt gcccgcaaac cggatgcgat
     8761 tgtgattggt ggctggaacc cgaatgtggc gaaaatccca ctacaaaaag cgactaaaaa
     8821 cggcattaaa cttgcagctt ggcacgcaac accggagccg ggtgcgattg ataaatacgg
     8881 cattttctac aacgtgacct ctgactcaga cgaaattgca cgcttatcgg caatgcttgc
     8941 ggtggcagaa tctaacggta aggcaaaagc gattatttta accgactcgc tatatgaaat
     9001 tgcgttacgc aaagcgaacg tcatgaaaga agttatcgaa aaatgtaaag agtgtaaggt
     9061 gttagagttt atcgacacgc cattggcgga tacctcaagc cgtatgccta acctcacttt
     9121 cagcttactg caaaaatatg gcgacgattt agagtatgcg ttggcaatta acgatctcta
     9181 ctttgacttt atggctccgt ctttacgcac cgctggtaaa gataaaccgt ttagcatttc
     9241 cgcaggtgat ggctcagtaa cggcttatca acgtattcgc aatggtgata aacagtttgc
     9301 aaccgtccct gagccactta acttacacgg ctggcagtta gtcgatgagc taaaccgtgc
     9361 tttcgctaac gaaaaaccgt ctggttatat cacaccggct cacctagtga ctaaagaaaa
     9421 tgtggcgttt gacggtggtg aaaacaacct gtatgcccca caaaacggtt acaaaggcgc
     9481 ttacaaagcg atttggggcg tgaagtaatg acgtaggggc aaataaatat ttgcctcgaa
     9541 caagcggttg ttttttgcaa agattttgcg aaatttaacc gcttgtcata aaaaatagag
     9601 agggtaatac aaatgagcaa taaatttatc cccaaaatct ccaaccctcg ttttaatgag
     9661 ctggttggga atacgtttga acttgaagag ctttttgata aggcaatctg ggcagaaggg
     9721 ccggcgtgga gcaagccaca acaagccctc tattttagtg atgtaaaagg ttgcacaatg
     9781 taccgctgga cagagcaaga tggtacacag gttttccgcc agccgtctta tttttctaac
     9841 ggcaatgcgt ttgatgcaaa cgacaacttg attacctgtg aacacggcaa tcgaggtatc
     9901 agtttaacca cgccaagcgg tgaatatcgt tttttggtcg gtcaattaga cggaaaacga
     9961 ctgaattcac ccaatgatgt ggtggtaaaa tcagacggca tcatttggtt cactgatcca
    10021 ccttacggta ttttgtcgga taacgaaggc aaacagtcgc caagcgaaat tatcggttgt
    10081 tatatttact gctatgatcc gaaaaccgac aagctgaata ttgcaacttt caacacgatg
    10141 cgaccaaacg gcttggcctt ctcgtcagac gaaaaacaac tctttgtggc agatatgtcg
    10201 agcgtggaat ttgacgaaga tggcttacac cacttagtcg tatttgatgt ggacggtaat
    10261 aaactaaaaa atcgccgaga tgtggcggaa attagtcccg gcattccgga cggcttccga
    10321 attaaacaaa acggcgtaat tttctgctct tgtgaagagg gaattattgc tcttttacct
    10381 gacggcacgg agctgggacg atttgtgctg ggtaagctaa cctcaaattg tagctttggc
    10441 gatgatgaac aaacactgtt tattacttgt tcgaatagcg tttatcgttt aacaattaaa
    10501 tagcagaatg cattaagtgc gtctgttgta gcattacaag cggtttcttt ttcaaaattt
    10561 tttacaaaca aataatggat aacaaaatga actacacact cggcattgat tgcggtggga
    10621 cttttatcaa agccgctctt tttgatacac aaggtaatat tcaagccctt catcgtgaaa
    10681 acgtttcggt aatcagtgaa caggcaggtt atgcagagcg tgatatgtca caactctggg
    10741 ctatttgtgc ggaagtagtg cgttcaacca ttgaaaaaag tggggtaaac ccagcggata
    10801 ttaaagcagt agggatttcc gctcaaggca aaggggcgtt tttactggat aagcagaatc
    10861 gaccgttggg gcgtgcgatt ttatcttccg accaacgttc ccttgagatt gttaaacaat
    10921 ggcaggctga aggcattccg caacaacttt acccgattac ccgccaaact ctttggacag
    10981 gacaccctgt gtcgattttg aagtgggtgc agcaaaatga accggagcgt tatgcacaaa
    11041 tcggggcggt gttgatgtcg cacgactatt tgcgtttttg cttaaccggt gagttgcatt
    11101 gcgaagagac caacatttcc gaaagcaatc tttacaatat ggaaaaaggc gaatacgacc
    11161 aacagttagc cgatttgttg ggaatgccgg atgtgttgga gaaattacca ccagtgattg
    11221 aaccgaataa aatttcggga tatgtgactg aaaatgccgc caaattaacc ggtttagcgg
    11281 tgggtacgcc ggtagtcggt ggcttgtttg atgtggtttc taccgcacgt tgtgccaatt
    11341 tagatgacga aaccaaactg aatgcggtgc tgggaacgtg gtcggtggtg agcggcatta
    11401 ccgatcatat tgatgcaagc caatcattac cttttgttta tgggcgttat gccgaggcag
    11461 ggaaatttat cgtccacgaa gcaagcccga cttctgccgg taatttagag tggtttgtga
    11521 atcagtggaa actcgattat gtgaaaatca accaagctgt tgcccaatta ccgccggcgg
    11581 caagctcggt gctgtttgtg ccgtttctgt atggctcaaa tgcaggctta ggaatgcaag
    11641 ccggtttcta tggtatgcaa gcccaccata cccaagccca tctcttgcag gcaatttacg
    11701 aaggagtgtt gtttagcttg atgagccatt taaaccgtat gtttatccgc tttccaaagg
    11761 ctgacgtgct gcgagttacc ggcggaccgg tgaaatctaa agtttggatg caaatgttgg
    11821 ccgatttaac cggaatgcgg cttgaaatac cacaaatgga agaaaccggc tgcttgggtg
    11881 cggcattaat ggcaatgcaa ggggttgggc tggatataag ccaagttcaa gccctaaata
    11941 atgaaatgca ggtgtttgag ccaaatccgg aaaattatgc ggcttatcag acgaaatatc
    12001 agcgttacca aaaattaact gaagcattaa atacaatgat ttaacctgaa tttatgcttt
    12061 tacaagcggt aatatttggt tacttttttg caaaaattac tgcttttttg tttatt
//
LOCUS       DANLUT010000066        12101 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLUT010000066 DANLUT010000000
VERSION     DANLUT010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12101
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(71..490)
                     /locus_tag="PXB38_001383"
     CDS             complement(71..490)
                     /locus_tag="PXB38_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353704.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFSVTFTALFTMMRLLHIFILSDLLDKIGCNTYE
                     LPKIEDIHKYEMLSILKIQAAKENNAELRYYVKKKKK"
     gene            complement(560..1693)
                     /locus_tag="PXB38_001384"
     CDS             complement(560..1693)
                     /locus_tag="PXB38_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5353705.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1824..2852)
                     /locus_tag="PXB38_001385"
     CDS             complement(1824..2852)
                     /locus_tag="PXB38_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353706.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2864..4408)
                     /locus_tag="PXB38_001386"
     CDS             complement(2864..4408)
                     /locus_tag="PXB38_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5353707.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4459..5397)
                     /locus_tag="PXB38_001387"
     CDS             complement(4459..5397)
                     /locus_tag="PXB38_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL5353708.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5729..7240)
                     /locus_tag="PXB38_001388"
     CDS             complement(5729..7240)
                     /locus_tag="PXB38_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5353709.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAVADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            7459..8283
                     /gene="iolB"
                     /locus_tag="PXB38_001389"
     CDS             7459..8283
                     /gene="iolB"
                     /locus_tag="PXB38_001389"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL5353710.1"
                     /translation="MSSPLLSKPNFSQPEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYTFENIGNRTTPFEKIPPYAVYIPPHKSVLIKTEL
                     NLELAVCKAPSQGHYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEPADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(8359..9810)
                     /locus_tag="PXB38_001390"
     CDS             complement(8359..9810)
                     /locus_tag="PXB38_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5353711.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDAEGIG
                     RELSTHPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTMGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQEMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(9988..11298)
                     /locus_tag="PXB38_001391"
     CDS             complement(9988..11298)
                     /locus_tag="PXB38_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5353712.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVVAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLLIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDAIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(11314..12009)
                     /locus_tag="PXB38_001392"
     CDS             complement(11314..12009)
                     /locus_tag="PXB38_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5353713.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKRRVGLLATDATLAVELYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
BASE COUNT         3475 a         2799 c         2366 g         3461 t
ORIGIN      
        1 gccaaacaga tatgaataat caaaaagaag ataataccta aaaaacgtcg agatattgat
       61 attctgactc tcattttttc ttctttttca catagtatct caactctgca ttattttcct
      121 tagctgcttg tatttttaat attgaaagca tttcgtattt gtgtatatct tcaattttag
      181 gcagctcata agtgttacat cctattttat caagaaggtc tgataaaata aaaatatgta
      241 ataaacgcat cattgtaaat aatgcggtaa atgtaactga aaaaaagaaa attgctgcaa
      301 tataatcaat ggtttttgtg agatatattt ccttttgctg tatcgcaata tagataggca
      361 cttgatgaac aagttggaag taagcatcca aataaacaac tatcaatatg aagcctaaaa
      421 accattctgt ttgcataaga acattgatag ggctgttttt tgtgctaaaa atttctttaa
      481 ttgaactcat aatttttcct taaatgtaaa aaaacgtacc tcaaccaatt tgagatacgt
      541 ttctatttta atgtaattat taaatctcac tcacctccac ccaccttttc tcctccgccg
      601 attttgctat cgcttccaat actctggaga ttttatagcc ttcttcaaaa tcgggataca
      661 tcgggtcatc agcggcgatg ccgttgatga ggtcacggat ttccaccgct ttttggtcgt
      721 taaaaccgat gccgtgaccg gcactcacac aaaaagcagc gtagtcggga tgttccgggc
      781 cgactaaaat ggttttgaat ccttggcggg atttatcgtc atcgtgcaaa tagagtttga
      841 gttctgccat tcgttcttgg gtatagctga gcgtgccttt agtacctgta acgacatagg
      901 tcagccccat tttacgcccg caggaaatgc gggagctttc gagcgtgccc attaccccat
      961 tagcaaatcg tatgagacta cttgcctgat cttcgttttc tactttgatt ttttctgctg
     1021 gattgtgcgg actagggcgt tcttcaatca ctgtttgcat atcgccgata acacgctcaa
     1081 tgtctgaacc aaccaaatag tgtgcgatac tgacaatatg tgcggctaaa tctcccaacg
     1141 taccaagccc ggctttggct ttgtagcagt gccaatcaat cggggtatta gggttggcga
     1201 gataatcttc gttatgcgtg ccgtagaaat gcaccacctc accaatttcg ccgttttgaa
     1261 taatttggcg agccagttgg gtggttggat ttttgatata gttgaaaccg accaaggttt
     1321 taactcccgc ttgttgagcg gcaatcacca tttctttggc atcttgggcg gtgagtgcaa
     1381 gcggtttttc tgaatagacg tgtttgccgt gtttaatcgc ttctaaggca atttctttgt
     1441 gcagaaaatt tggtgtacaa atgtccacca catcgacatt cggatcggta accaattttc
     1501 gccaatcgtc agtagcacgc tgaaagccaa attctcgggc tttttgatcg gctaatgctt
     1561 ggttgatttc ggcaaggtat tccagttgga ttttgccttt aagtggaaac agggttgggg
     1621 cttgagcgta ggcaatggcg tggcagcgac cgatatagcc ggtgccaact aagccgattt
     1681 tgatggtttt cataatacta tcccagtagg gtgcgtttgc taacgcacca ttagaatttt
     1741 cagtgcattg gcaaacgcac cctataagaa agcggtctgg ttttgcaaaa tttttacaaa
     1801 atcagaccgc ttgtgttagc tatctataat gctcctcgtc tgctcttcgc ataggtgtcg
     1861 aaggcaacgg caaggatgat gattaagccc ataatgattt gttggtagta agcggaaacg
     1921 tccattagta ctaaaccgtt aatcaataca cccataataa tggagccgat gatggtgcct
     1981 gtgactcgtc cgtatccccc cattagggaa gttccgccga taaccactga ggcaattaca
     2041 cgtagctcaa aagaaacgcc ggcaacggat tcggcactgc ctaaacgggc ggagagaatg
     2101 aaaccggcaa gtcctgccaa tgctccgatc accacataaa cactgactaa ggtacggttg
     2161 atattcacac cggctaaacg ggctgcttcc ggattgccac ctaccgagta cacatagcgt
     2221 ccccagcggg ttttatgcaa tgcgaagtaa ccgataatgg cgactacggc aaaaatcact
     2281 accggcaccg gtacgcctaa aatatcgcca cgtccccacc agcggtaacc ttcgtcaaat
     2341 ccggcaattg gcgagccgtt atttaacaca agtgttaaac cacgccaaat tgtcataccg
     2401 ccaagcgtga taataaacgg tggcagtttg agtttagtga cgcctaagcc gtgtaaccaa
     2461 ccaatgaaag tgcctaaacc taaacagata ctcaaaccta tcagccagct cattccgccc
     2521 caagcaccgg cttctagcgt taccgtatta tcgcctttga taatataggc cgcgaacatt
     2581 gcggtaacag caaggattga gccgacagag agatcgatcc ctgcagttaa gatgacgaaa
     2641 gtcattccta ccgccataat gccgaaaatc gacacttcgg ttaaaacgtt atagatgttg
     2701 cgttgcgata aaaatgcccc gttttgtgaa gtgaagaaaa taatcagtaa gatcaagaaa
     2761 atcagtacgc cgaaacgttc aaagaaggcg ataaaatcga tttttccttt gtcatcgacc
     2821 atacccatat tttttagaaa ttgcgttgtc atacaaacct ctcttatgct gccgctttac
     2881 gctgaacgcc aacagccatc attgacatta atttttcttc ggtggcatca tcgccgtgaa
     2941 tttcgccagt tacccgacct tcggaaagag tgataatgcg gtcggaaatc gccataattt
     3001 ccggtaaatc ggaggaaatc actaataccg caacaccttg ttttgccata tcaaacagca
     3061 cttggtgaac ctcagatttt gccccaacat caatacctcg tgtcggctca tcaacaatta
     3121 gtactttcgg gttgagtgcc atacaacggg ctaaaatcac tttttgctga ttaccacccg
     3181 ataatttgcg ggcttcaagt tcgctacttg ccattttgat gcgtaacgct tggcggtagg
     3241 tttcgattaa atcatcttct ttttgattat cgacaaacaa gttacccttc aataatttgc
     3301 ttaaaatcgg cagggtcata ttggttttaa tcggtaaacc gagaactaag ccctcttttt
     3361 tgcgatcttc cggcacaagg gcaacccctt tttccaaagc atctaacggc gaggtggcag
     3421 cataaggctt accgtctagg ctgatttcat cagccgtata attttctacc ccaaacaagc
     3481 aacgggcaat ttcagttcgc cctgcgccaa ctaagccggc gatccctaat acttcaccct
     3541 cgtgaatgtt aaaagagaca ccgtggagag caatgccgtg tggatcgaat gccggttttt
     3601 cccgatgcag atttttcaca gctaaacgta ttggtcggtg ggtatggtga gtctcttctg
     3661 gtggacggcg agtaaaggca acttcacgtc ctaccatcat tttaataatt tgatcgacat
     3721 tcacattttt gacttcaccc tcaccagaat agcgcccgtc ttggaaaacg gtgaaacggt
     3781 cgcatagggc aaacacttcg tttaagcggt gggtcacata aatcacgcta atgccacggc
     3841 tttttaaatc acgcacgatt tggtgtagtg tttccacttc tttatcactt aaggcagcgg
     3901 acggttcgtc cataataatc aacttagcgt ttaaggtcat tgcacgggca atctcgacca
     3961 tctgctgttg tgccacactt aaacgggaaa cttgggtgtc aggtttgata tttaagccga
     4021 gattatccag cactaattgt gcttcctcat tcaccgcttt ttcattgacg aataaacctt
     4081 tcaccggctc tctgcccaaa aagaaatttt cagcaaccgt catattcggt aacaagttaa
     4141 attcttgata aatcgttacg atgcctttga gttggcgatc aaacggggaa tcgctcaaac
     4201 ttaaggtttc accgttaaag ataatttcgc cacttgtttg tggctgagcg cctgaaagtg
     4261 cttttaataa ggtcgatttt cctgcaccgt tttcacccaa caatgcgtga acttcgcctt
     4321 ttcccacagt cagtttcacg ccattgagtg ccataacacc agagaaactt tttgtcagat
     4381 ctttcacttc aagtaaggga gtagacatac aacctccgta aaaaaacgcc ctccggcctc
     4441 agccggaagg cagataaatt attcgctgat ttctgcaaaa cgttctgctt cttgcagatt
     4501 atctttcagg ataatttttg gcggatagtc cgcaccgctc acttctttgc tctcacggat
     4561 attgccaacc acttgctcta atgcggtgct taccgcaaaa cttgggcgtt ggtcagcggt
     4621 gagatacaac cagccatctt tcacacgtgc aagagcctca ggggttgagt caaagccggt
     4681 tactaaaata tcgccggctt tcaaaccttg gctacgcaat gcttcaatcg caccaagtgc
     4741 catatcgtca ttcgctgaaa taatcacttc tggtttctct tttaaggttg gtaacacact
     4801 ttcaataatg cgtaatccct cagaacggag ccagttaccg gtttgatcaa ccacgatttt
     4861 atatttgtca ccaccggcag ctaattcatc acgaatacct ttggtacgtt caatgttaga
     4921 ggttgaaccc ggctggccgg ttaaaagaat aatttttgcc ccattcgggt atttggcttt
     4981 cactgctttt gcgacttctt gaccgcctgt gtagttattt gccccaaagt gtggaaccgg
     5041 cttactgctt tcaacttttc ggtctaatgt cgcagcagga attttttctt tgataatttc
     5101 ttccactgca cctgaaatcg cattcacatc attcggggaa atgataatgc ctttagcacc
     5161 acgggtaatt gcattttcta agtcagaagc ctgcttagta gaagaacttt gcccgtctaa
     5221 tacttgcaat ttgatctcca actttttact ggtttctacc gctacttttt gtagttgaac
     5281 ttcaaacggg ctggataggt tcggtaagct aaataccaca agctcatctt tcgcaaagct
     5341 gttcattgct aagcctaacg ttaaagcact caatacaaat ttaatacgct ttttcattac
     5401 aaaatcctct ttttaagatg ggaattgacg gcgaatattg ccaatgttac ttcaaactgc
     5461 gaaggaaact taagtcttat ttcaataata aacctcaatg aaataaattt ttcaatttag
     5521 aatatatcat tcaaaatttt ccaaaccaaa tgctttgttt caaatttgtt acgtagatca
     5581 catttttagg aagagataaa tgcaagcggt caaaacaggt cgcttttttg caaaaatttg
     5641 aataaaaatg accgcttgtg agatgaaaac caataaaaaa gcggtgattt ctcaccgcta
     5701 aacactcaaa aaagaaatgt actcgttatt ataaggttgg gaaattaaat gccgcttggc
     5761 tacgcaccga gctgtccggc caacgggttg tgatggtttt catacgggtg tagaaacgca
     5821 cgccgtctgt gccgtacaca ttgagaggcc cgaaaataga ggctttccaa ccgccaaagc
     5881 agtggaacgc cattggcaca ggaattggaa tattcacgcc caccataccg gcttgtacat
     5941 cttgggtgaa ttgacgtgct gaatcgccat ctgcggtgaa aattgcacta ccattgccgt
     6001 attggtgact gttaatgagt gcgatccctt cggcataatc tttcacacgc acaacagaga
     6061 gaaccggtcc gaagatttca tcttgccaga tggtcatttc aggtgtcacg ttatcaaaca
     6121 gcgtacctcc gacaaagtaa ccgttttcaa acccttcgac tttatagcct cgaccatcga
     6181 cacagagttt cgccccctgt gccacccctt gatcgatata gctctcaatt ttggctttat
     6241 gctctttgga aatcaccggc cccatatcat tttcaagcac gccttgtggt agtaagcctg
     6301 aaccgatttt caatgctttg accttaggaa ttagctcttc aatgatttta tcggctaatt
     6361 catcaccaac aactaccgct accgatagtg ccatacaacg ttcaccggct gcaccaaatg
     6421 ctgcgcccag taaggcatta attgtgcctt gtacatcagc atccggcata atcaaagcgt
     6481 ggtttttcgc accgcccaag gcttgaaccc gtttgccgtt tgctgagcct ttctcataaa
     6541 tatattgtgc aattgcagtt gagccgacaa aactcaccgc ctgaatgcga gagtcggtta
     6601 aaagaatatc taccgcttct ttatcacctt gcaccacatt gaatacaccg tccggcaagc
     6661 cggcttcttt taataattct gccaagcgaa tagacacact tgggtctttt tcagacggtt
     6721 ttaaaacgaa agtgttaccg caagcaagtg ccactgggaa catccacatc ggtaccattg
     6781 ccgggaaatt gaacggggta atgcctgcca ctacgcccaa cggttgctgg attgagtgaa
     6841 tatcaatgcc acgccctgca ttggcagaga actcaccttt ttgtaagtgt ggaataccgg
     6901 tggcaaattc caccacttct aaaccacggg ttaattcgcc aatcgcatcg gaatagattt
     6961 tgccgtgttc tgagctgatt aaacgagcca actcatcaaa gtttgcttcc aataactctt
     7021 tgaatttaaa taaaattctg gcacggcgta gtggtgattg ttgcgaccag cttttgaaag
     7081 cctgatcagc cactgcaatc gctgcatcga cttcgtttgg caggcttaat ttgacttttt
     7141 tggtctcttc accggttgcg ggattaaata ccgaggtaac acgctggctt tggctttcaa
     7201 cgactgcacc gttaataaaa ttttggacaa attggctcat tggaggctcc ttatcaactg
     7261 attgagagga aaaacggata aaatacagcc gataaactac cgctaaaaat ggaaaatatc
     7321 aatacacaat actaaaaaat gaaaaattta tttcattttt gtgatctaag tagcaagttt
     7381 acagattgcc tgtattaaaa tgcgataaaa tttcgtatag tttgaagacg tattccattt
     7441 cgttaagcga ggtttcctat gtctagtcca ttattgtcta aacccaattt cagccaacct
     7501 gagggattaa ttcaacacat tacccctgaa aatgcacagt gggaatatgt tggatttgat
     7561 gtttatcagc tcagtaagca acaaattacg ctggaaagtg gtgaaaatga actttgtcta
     7621 gtctttgtga ccggttttgg ttctgtctat gttgatgatt atacctttga aaatatcggc
     7681 aaccgtacca caccatttga aaaaattccg ccttatgcgg tctatattcc gccacacaaa
     7741 agcgtgttga ttaaaactga actcaattta gagttagcag tgtgcaaagc accaagtcaa
     7801 ggtcactatc cggtgcgttt gattagcccg aaccatatcg gtgtggaaaa acggggcttt
     7861 ggcaacaatc aacgcttggt gcataatatt ctgccggaaa ccgaaccagc cgacagtttg
     7921 ctggtggtgg aagtctttac cgatgaaggc aataccagtt cctacccaag ccacaagcac
     7981 gatgacaaac actctaccga agaaacctat ttggaagaga cctactacca ccgcttcgat
     8041 ccaccacaag gttttgcaat gcaacgggtt tataccgatg atcgcacact tgatgaatgt
     8101 atggcggtgt atgataaaaa tgtggttaaa gtgcctcgtg gctaccaccc tgttgctacc
     8161 attgcaggct ataataatta ttacctaaat gttatggcag ggccggtacg caagtggaaa
     8221 tttacttggg aacaagatca tctttgggtg aacagtgaaa cctataaagc caaatttgag
     8281 taatacaagc ggtctttttc caccaatttt ttacaaaata agggattaaa aatgggacgc
     8341 ttttggcgtc ccattcggtt atactttcat acaaagatat tttatttcta aaaactcttc
     8401 aataccgtat ttcgaacctt cccgcccaag cccggactct ttccagccgc cgaatggggc
     8461 tatttcgtta ctgatgatcc cctcgttaat cccgacaata ccgtattcca actgttccga
     8521 cactcgccaa attcgcccga tattttggct gaataagtaa gccgccaaac caaactcagt
     8581 atcattcgcc cactggataa cctcttcttc ggtttcaaat ttgaaaatcg gggcaagggg
     8641 agcaaaggtt tcctcacggg caactttcat ttcttgagtc acatttttta gaatagttgg
     8701 ttggaagaat gtgccgccca gtgcgtggcg ttcaccgcct aacaccagtt ctgccccaag
     8761 tgaaagggca tcgttaatgt ggctttcgac tttttccacc gctcgttcac taattagtgc
     8821 acccatcgtg acctcttcct caaatggcga gccaagcttg atttgagcca ctttctcact
     8881 caattttgca agaaattgct cataaatgcc cgcttgcaca taaattcggt tagcacagac
     8941 gcaggtttgc ccaccgttac ggaatttaga ggcaaacacg ccctcaaccg ctgtatctag
     9001 atccgcatca tcaaacacaa tcgccggtgc attaccgcct agctccaatg ccaatttttt
     9061 taccgtccct gccgattgtt gcattaaaat tttgccgaca cgggtggagc cggtaaaggt
     9121 gagtttgcgt acggtcggat gagtgctcaa ctcccgccct ataccttcgg catcgctact
     9181 ggtaataatg ttaaataccc ctttgggaat acctgcttga tccgctaatt gggctaatgc
     9241 taaggcagaa agcggggttt ctgccgccgg tttaatcaca atcgcacaac ctgccgctaa
     9301 cgccggtgcc gctttacggg taatcattgc atttgggaaa ttccacggtg taattgctgc
     9361 caccacgcca atgggttgtt tagtcacaaa caagcggcga ccggctttat cttgtggcaa
     9421 gacatcgcca taaatccgct tgctttcttc ggcaaaccac tcgataaaac tggctccata
     9481 ggcaatctcg cctcgacttt ctgccaatgg tttaccctgt tctagactta aaatctgggc
     9541 gagttcttct tggttttgca taatcagctc aaaccattta cgcaaaatca cggaacgctc
     9601 tttgggcaat aatgcctgcc attttttctg ggcaactgcg gctgcttcaa tcgcttgagc
     9661 ggtttcttcc gtgcctaaat cagccacctc accgattttc tcaccattag tcggattctg
     9721 taccgtaaag gttttcccat tttggcttga aacaaattta ccgttaatat aggcttggaa
     9781 acggagtagc aaaaatttgt gatttggcat aatcactcct tgaatggtta aaaagagaac
     9841 aatgttgact ataatccaat ttcagtaaag agaaaagagc tgaaaaataa ctttttactc
     9901 aataataaag caccttagac aagcgttctt ctaaggtgca gccatttatt attgagaatt
     9961 aacttaaatt ctctacatat ttaataatta agatacaatc attggagccc atacgaatcc
    10021 aaaagcaagc ccaacagcaa ccccaactaa agctggaagc ataaacggat gatctataat
    10081 atatttgcca gcacgagttg aacccgtagt atctaattcc atcgctgcta atgaagttgg
    10141 gtaggttggc aggataaaaa tgcctgtaat tgcaatgaaa gaagccaaaa ttgcccagtt
    10201 agggatcccc aagcttactg ctaatggaat aataagagca gaagttgacc cttgtgaata
    10261 aagtaatgca caagtaaaaa agagtactac agctaacaac attggatatt cagttaaaat
    10321 atttccaata gaggctttaa tttctattaa atgtgcatcg acaaaagtca tacctaatgt
    10381 aacaatcccg ataattaccg caatagaagt cattcctgag cggaaaattg gactagccac
    10441 aatcgcatca ggtttaattt ttcctaccaa catcattaag cacgaagagg ctaacatcat
    10501 cacaataatt atatctcggg tactcattga cttcccattt tcatatactg gctttaaccc
    10561 tggaacggct gcaagtagaa caaccaatac agttgctagt aagaaaatgc caatcaatag
    10621 ttttgctcct tttgaatagg tagattcact cgctaactta cgagatgggc tgacgattcc
    10681 tgcttttaaa cgttctaaat aaacaacatc attttgcaat tcacagccct gcttagaagc
    10741 aacaaatgca acaaccatag aggcaataaa agaaacaggt aagcatactg ctattacttg
    10801 aaaaaatgta acactgttgt tttccattac tgctatcata gccgccattg cagcactcaa
    10861 tggagaacct gcaatagcta attgagaaga cacaaccgag ccggctaatg ctcttgaagg
    10921 gcgaatacca ctctcttttg ccacttctgc aatcacaggt aaggtagaaa agacgataaa
    10981 acctgtacca gccataatcg tcattaacca agtaatcatc ggtgcaataa agttaatata
    11041 tttaggattt ttacgcatca atacttccgc ataacgaaca agtaaatcca tacctcctac
    11101 tgcttgtaac acagcagcac ctattacaac agtcataata atcagcatta catcaactgg
    11161 aatagaaccc ataggtaaac caaaacctag agttagaatc gcaagcccta aaccaccata
    11221 tagtcctatt cctaagcccc cagaacgcag tcctaaatag attgcagcaa gtaccacaaa
    11281 gatttctgca taaatcatat ccatctcctt aaattaatga gtttgatacc aatcaattgc
    11341 ttttttaacc aataccaacg ttgaatctac ataacgcatt ggctcacgct ctatttcttg
    11401 agctaaaata ataggtactt ctgtacaacc taaaataatt acttctgcac ctaaacgaat
    11461 gagttcatca cgttgttgta acattagctc tgtggctttc tctaactcac ctgattttaa
    11521 taaatagata ctatccatta ctgccttttg accattttct gtcgggcaaa taaaagtcag
    11581 tccttgtgct tcaagctgtt ttttgtatag ttctaccgcc aaagttgcat cagttgccaa
    11641 caatccaacc cgccgttttc cacacttcaa aacctcatca accacacaat caatcatact
    11701 tagcatctct acctgacttt tggccttcaa gtgttcaaac caataatgtg cagtattaca
    11761 tgcaataatg atgcaggttg cccctgcact ctcaagccct tcaatatatt tttccattac
    11821 cggagccgga ttctctccat ttgctaaaat atagcgagtt ctatctggta tgtcgggaat
    11881 agaggaaatc aataatggaa tatgagcttg atcacaatca gctggtgtta agcggataaa
    11941 tttttggaac atatctgctg ttgctgcagg tcccattcca cctaaaatgc caataatatt
    12001 tcttgccata cacttctcct tataagattt aatttactgc gatgacttat acaaacaagt
    12061 tatgcaaaaa agaaatgcaa taaatcgaat cagtatgcaa a
//
LOCUS       DANLUT010000067        12012 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLUT010000067 DANLUT010000000
VERSION     DANLUT010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12012
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            91..348
                     /locus_tag="PXB38_001393"
     CDS             91..348
                     /locus_tag="PXB38_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018346247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353714.1"
                     /translation="MFGYKTKKQLIAEGYTHYGSLWGIPCYIGDVESEAPIIATANFI
                     PQWFLDVADWIMFTMHDLVNVNNPDAEPLMFKILLKNPIEE"
     gene            715..1239
                     /locus_tag="PXB38_001394"
     CDS             715..1239
                     /locus_tag="PXB38_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5353715.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAKNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            1223..2443
                     /locus_tag="PXB38_001395"
     CDS             1223..2443
                     /locus_tag="PXB38_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDL5353716.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAY
                     LEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEA
                     GKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVDKWKGSVE
                     DGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYAL
                     TPLMQVKSAKGVLL"
     gene            2440..3816
                     /locus_tag="PXB38_001396"
     CDS             2440..3816
                     /locus_tag="PXB38_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL5353717.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            3770..4708
                     /locus_tag="PXB38_001397"
     CDS             3770..4708
                     /locus_tag="PXB38_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5353718.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            4695..6065
                     /locus_tag="PXB38_001398"
     CDS             4695..6065
                     /locus_tag="PXB38_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL5353719.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            6058..6492
                     /locus_tag="PXB38_001399"
     CDS             6058..6492
                     /locus_tag="PXB38_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353720.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            6507..7493
                     /locus_tag="PXB38_001400"
     CDS             6507..7493
                     /locus_tag="PXB38_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL5353721.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSESILNKVMTIPQIAKIVPASRVPQNEILGLCKRSD
                     VYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            7505..7747
                     /locus_tag="PXB38_001401"
     CDS             7505..7747
                     /locus_tag="PXB38_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353722.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGETGETGETGETGQKGKKDKGK"
     gene            7750..8127
                     /locus_tag="PXB38_001402"
     CDS             7750..8127
                     /locus_tag="PXB38_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353723.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            8127..8471
                     /locus_tag="PXB38_001403"
     CDS             8127..8471
                     /locus_tag="PXB38_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353724.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            8473..8841
                     /locus_tag="PXB38_001404"
     CDS             8473..8841
                     /locus_tag="PXB38_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5353725.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            8838..9218
                     /locus_tag="PXB38_001405"
     CDS             8838..9218
                     /locus_tag="PXB38_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353726.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            9222..9704
                     /locus_tag="PXB38_001406"
     CDS             9222..9704
                     /locus_tag="PXB38_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5353727.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(9744..10160)
                     /locus_tag="PXB38_001407"
     CDS             complement(9744..10160)
                     /locus_tag="PXB38_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5353728.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(10216..10392)
                     /locus_tag="PXB38_001408"
     CDS             complement(10216..10392)
                     /locus_tag="PXB38_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5353729.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            10489..11160
                     /locus_tag="PXB38_001409"
     CDS             10489..11160
                     /locus_tag="PXB38_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353730.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(11175..11408)
                     /locus_tag="PXB38_001410"
     CDS             complement(11175..11408)
                     /locus_tag="PXB38_001410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353731.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
     gene            11577..>12012
                     /locus_tag="PXB38_001411"
     CDS             11577..>12012
                     /locus_tag="PXB38_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353732.1"
                     /translation="MKKMIVFVASVLSSFVIASDWEIIEAAQNKVKAELIRKSEKKAE
                     LCLNVAQAVLITNQKVQKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIE
                     SDYIYQRATKDFYFNYNGKKSAYYDPQSDLARLQEVSDSMFNA"
BASE COUNT         3651 a         2393 c         2836 g         3132 t
ORIGIN      
        1 gagtacctcg tcaaagtaat gggagaacgt gatttgtgtg ctaatcaaat cgaccgtatc
       61 agagaatggc aggcagaggt tagcaaataa atgttcggat ataaaacaaa aaaacagtta
      121 attgcggaag gatacacgca ttacggcagt ttgtggggca taccttgtta tattggtgat
      181 gtagaaagcg aagctcccat aatcgctaca gctaatttta ttccgcaatg gttcttagat
      241 gtagctgatt ggattatgtt cacaatgcac gacttagtaa atgtgaataa tcctgatgca
      301 gagccgttaa tgtttaagat tttactgaaa aatccaatag aagaatgatt acagaggagc
      361 ttaaacgctc cttttttatt ttaatgaaaa gtaaatgcta cataatttag ctatggtttc
      421 ggggttggtt ggataaaaca ccgaggaaat acctaagtga tgtgatttat ataaaacaaa
      481 accccgaaca tttgcggtgt tcgaggtttt ttattaccca ttgaaacgga atgagtaaca
      541 agttatggaa attattacat ttttaaccgt aaccatcaag gagattctta tggaatatgg
      601 tttatggcaa ataagcctag cagtaacagt ccctattttg gcgttcgtgt cgccaaagct
      661 gattaatgct attgctaatc tattaaatgc aatgaagtaa aggaatttaa cccaatgact
      721 aaaaaaggcg aggttaaagc cacgtctaaa ggcgtgggta aattaactga taaacagaaa
      781 cgatttgtag aagagtatct gattgacttg aatgcgactc aagctgcgat tagagctggg
      841 tatagcgaaa aaacagcata ctcaatcgga gaagagaacc tgagaaaacc tgaaatcaga
      901 agtgcaattc aggaggctaa aaataaacgc tcggagcgaa ctcaaattac acaagatgat
      961 gtgctaaatg ggttgcttga agttattgca atgagtactg gtaaaaaaat tgtgacagaa
     1021 actgatgttg caaaaaatga caatggtgag ttggtcggtt ttgatattgc aaaaacaaaa
     1081 ttcgaacctg ccgccgcaaa taaagctctt gagttactag gtaaacattt aggaatgttt
     1141 aaagacaagg ttgatttaat taattctgat ggttcactga atcgaccgat ggtgattgaa
     1201 ttaattgctc cgagtttaga cgatgaaagc acagattgaa ctaccaccta aactgttgcc
     1261 tgtttttgcc aaagattatc gttacaaagg tgcttatggt gggcgaggtt caggcaagac
     1321 tcgggcattt gccaaaatgt cggcagtgtc tgcttataaa agagcaatgc aaggggaaag
     1381 tggcgttatt ctttgcggtc gtgagtttat gaactcattg gaagaaagct ctcttgaaga
     1441 agttaaacag gcgatcaagt ctgagccttt tttagcaaat ttttttgatg tcggcgagaa
     1501 gtatgttcgc actaaagatg ggcggatttc ttatgtgttt tccggacttc ggcataactt
     1561 agatagcatc aaatctaaag cccgtatttt gattgcgtgg atagatgaag cagaaacagt
     1621 aagcgaaact gcttggcgga aattaattcc aaccgtgcgt gagaataatt ccgaaatatg
     1681 ggtaacttgg aacccggaaa atagagggag cgcaacagat actcgcttca ggcaaaatcc
     1741 acctgaaaac agctgcataa ttgaaatgag ctaccaagat aatccttggt ttcctgatgt
     1801 gctcgagcaa gagcggctaa atgacaaaca gcggcttgat gatgcgactt atcgctggat
     1861 ttgggaaggt gcttatttgg aagcgagcga agcgcaaatc tttcgcggta aatatcaaga
     1921 aatggaattt gtgccgaacc ctgattttga tggcccatat tacggcttag attttggttt
     1981 cgcgcaagat ccgacggcgg cggtcaaatg ctgggtattt aatggcgatc tgtacatcga
     2041 gtttgaagca ggcaaagtgg gcttagaact tgacgacacc gcagacttta ttgccaaagg
     2101 cgtgccacaa attgccgatc acgttgtgcg tgcagattcg gcgcgtcctg agtcaattag
     2161 ttacctcaaa cgtcacggct taccgcgcat tatcggtgtg gataagtgga aaggctcggt
     2221 tgaagatggc attgagcata ttaagtccta cggcaaagtc tttattcacc cacgctgtca
     2281 gcaaacgctc aacgaatttc gcctttattc gtacaaaacc gaccgcttgt cgggcgatgt
     2341 attgcctgtc gtgattgatg cccataacca ctttattgat gcgctacgct acgccttaac
     2401 gccgttgatg caagttaaaa gtgccaaagg agttttacta tgagcctaga gcaagacaga
     2461 ctggcttttt tagccgaagc cctagggctt ggcaatatca aacgaagaac gttatggaag
     2521 gagtttggct accctaatac cttaacattc aaccatttct taaaagccta taagcgcaat
     2581 agtatcgctt ttgcagcgat taaccgctta cttgacggtt gttgggttga ctgccccgta
     2641 atcgttgagg gtgagcaaaa gaacgaatca aagcagacaa ccgaatggga gtccaaagtt
     2701 gaacgtttta tgaaacgcta ctggtcggca atcaaagagg cagatagacg aaaccttgtc
     2761 ggtaactatt cggcgttatt acttcaagta agagatggtc aacaatggga tcagcctatt
     2821 ttgcaaggcg cgctatctag cattggagag ttcggactgg ttaaactgat ccccgtgtgg
     2881 cagtcacagc tttcagtgac agagtttcaa gaggatgtga ccgccgataa ttacggcgaa
     2941 ccgctgatgt atcaattcag cgaatctgcc tttggcaaaa aaagcgtgtc acgaaatatc
     3001 aaggttcacg caagtcgtgt aattttgctc aatgagggtg gcgactttaa ttcccctcat
     3061 tctggagttc ctctgcttga ggcgggttac aacaagctag ttgatctcga aaaaacatcg
     3121 ggcggcagcg ccgaaggttt tctgaaaaac gcaagccgac aattagggat caaattaaca
     3181 aaagatgttg atttgagaca gctcgaagac agcgcaaaag cccttgggtt ttcttcattt
     3241 tctgatgcgt tgaacgacaa gatcaagaaa atcaactcag gaacagactc agccttgatt
     3301 actcacgaag gtgatgcctc tgtgttgtca gtcgcaccag cagatccgaa gccaacgtgg
     3361 gaaatttctg caaatgagtt tgccgcctca gtacaaatcc ctttcacgat tttgttcgga
     3421 cagcaaacag ggcgattggc aagtgacgag gacaaaaccg actgggcaaa ccgttgcaac
     3481 ggtcgtcgaa atggttttct caccgatgtg ataacacaac tacttaatcg cttgtggttc
     3541 atcggtgtgc tacctatgcc aaaaaatagc gatgtcacag tgtcttggtc tgacttactt
     3601 gcaccaagcg aaaaagagaa aatcgcaaac gcacaggctt tggcttcagt tgcaactaca
     3661 tcgcagtctg cctttggttt tgccgcggta acagcgaacg aaatccgcga atctttaggg
     3721 tttgaacctc tgcctgataa tctgattccg ccaacaattg acgacgaaaa tgaagatcaa
     3781 gacgaaaatc aagccactgc ggattccgac aaataaagcc gatccgctca atatgggagt
     3841 gtcggttgcc aagctatttc gtcacattga tgtcatttac tcacaaatta agcgctccat
     3901 taagcaacaa atcttgcaaa agatgtcact gcgactgcaa gcaaataatt ttgagtattt
     3961 tccttcgtat cttactgcga ctgagttggc ggatttgctt gaaaccttgc aaaagattat
     4021 cgacaaagag attttgtcga atggttctca aggcgaaaat ctctggtttg actcctatat
     4081 cgacgaagca gcactaaaag gcactcagtc tgcggtcact gatttaggtc tgcaatcaga
     4141 ggcttatcgc agtcagcgaa acttatcatc aatcgttttc agtcctgcgt acttcaatcg
     4201 attggcgatt gcacacatgg caagttatag cgagtggcaa ggtttaagcg acgagttgcg
     4261 aaaatctttg gcgggggtga tcacggaggc ggttttaaac ggcaaaaacg tgaaagaaac
     4321 tgcccgtgag attcggcaaa aacttgatgt gtcatcaaaa cgggcgaagc gaatagcgca
     4381 atcaagccag ttggcggcat atcgtcgggc agaatggcaa gaggcggaag aggcaaaaga
     4441 agaacttggg ctaaacacca agctcttaca tttttcagcg ctcaaagcta ctacgcgatt
     4501 agcacacgcc caacgccacg gcaaatactt cgatgttgca gaggtgcgcg aatggtatag
     4561 ccgagacggc aaccaattca actgttactg caagcagtct gtggttgtgg tcaatgccga
     4621 cggtaaaaca gatattgagc ctctccttgt tgggttggct aaagaacgta aacaatgggt
     4681 aggagcatta aaaaatgtca aaaaataacg tgaacatcgt caccgtcatt aacagcaaaa
     4741 atatcagcac agaatctatt gacggagatc aacacctgat tatccgcggc gttgtgccga
     4801 ttgttgatga tgttgtgatg aacgacggac tttatcctgc ggatgaaatc aataaaagct
     4861 acaacagctt agagggcaac tttatgccgc ttgggcatcc aaaaatcgaa ggtaaatacg
     4921 tttcagccca agatgttcga gcggtgaaca aacatcacgt cggtgcgtgg gcgaagaacg
     4981 tacgcaagga aagtggcaaa gtgctggtcg atatgtatat caaccgccgc tttgcggaag
     5041 gttcagaaca gggcaaaacc ttgcttgaac gacttgacgg aatggtgaca aacaccaacg
     5101 ctgaacctat tcacgtttcc acagggctga ttctaaacaa agtcaagcaa tcgggtaaat
     5161 ccaaaggcaa gaaatatagc tggattgcga caaatatgtc gttcgatcat attgcaatat
     5221 tgcttgatgt gccgggcgcg gcgacacctg atgatggcgt ggggattttt gtaaaccaag
     5281 acggaagcga aatgggggtg gaaaatgtaa acctaacaca agcggcggat taccgcacag
     5341 aaaagctgtt tgacaaagta cgattttacc tgatggcgaa ctcagattta tcgtttgaag
     5401 aaattcatcg cgcgctgcgt gaagctattc gccccgaagg caaagataag tggtcatttt
     5461 gggtcgaagc tgtttacccg aaatacttca tctattcgga cgataacagc ggcaagaaat
     5521 acaagcggag ctattttatt gacgaaaatg acaatgtgca actcactagc gaacctgtcg
     5581 aagttgtcaa gaagattggc tacgaagaaa ttacaaccaa tgaggaacat aatccaatga
     5641 aaaccaaaat cttagccgtg ttgaatgcgg caaacgtgaa aacggaaggc ttaaatgacg
     5701 atcagctctt ggaagcctac aacaagctgc aagcggataa gggtaaagag cctgaaaagc
     5761 ctaaaaatga agatgacagc gaaattgatg agaaaatcaa gaaagcagtc aatgccgcga
     5821 ttgagccact ccagcaagcc ttgcaagcta atactgacaa agagcaagca gcaatgcgtg
     5881 cggcggtgaa agccaagttc aatatgagcg atgccgcagt caatgctttg caaggcgagg
     5941 tattaactga gttgtatgcg caaacgcaac aatcggtcgg attaaacaat aattcggcca
     6001 acggcaacgg cgacaatcaa tgggatggtt actcactcaa ccaagaggag aaaggcaatg
     6061 agtaatgtaa tttatcgcgg ttcggtcaag cgtgaacctc aaacggtgaa tatcgtgatc
     6121 aacgatactt cggcaccggg tgcagtagtt aaactccaca acggcaaatt agaggcggcg
     6181 gctgatttaa aaggtcgccg ttttttattg ggcaacaacc gctttaaggg gcagacaatc
     6241 gaacaagcgt atgcgaaggg cgatactgca acggcgtttc gtttagagcc tgaacaggag
     6301 tattacgcgc aaattgccga cggcacttat aactttggcg atgaactcac ggtaaaacaa
     6361 gcgggcggca aactgaccaa agcggagacg ggcgatgtag tgctattttt cttcgacgaa
     6421 gaatcgcagc gtgtaatcag tggcggcaaa ggctatgccg atgtcgtggt ggcaaacgcc
     6481 tacactaaat aagaggtaac aaagcaatgt tgaaattcac aaaagaacaa gaacgcttcg
     6541 tgattaacga gcggatcaat tacgacaaaa aacacgcgct aatggcagca aattcggcgg
     6601 ggttattggg caacgcgatg actttgccga aagatgtctg ggcggaatgg gatcgtgatg
     6661 cagtgcaaat tcagcgcgaa gaattggtgg tgtttaacga tttagcgggc atttcaaaat
     6721 caatgccgat tggcaaactt attcaccatt tccaaacggt atctgatagc ggttcggtta
     6781 atatctcatt agacggtcgt tcatcagcga aaaccgataa cgtggtgctt aactaccacg
     6841 gtacaccgtt gccgattatt gattccactt tctcttttgg ctggcgcgat atgtcggcag
     6901 ctcaaagcga agggtatcag atcgacggtg cagcacgcgc gaacagtctc cgcaaggtgg
     6961 ctgaaaaaat ggaagatctc gctttaaatg gtgattcctc tattgtggtt ggcaatgcca
     7021 agctttacgg cttgcgtact gcgccaaatc gtatgactaa cacacacaat ctggatttag
     7081 ccactgcgac accgaaagaa atttacgatg tgttccgtga cttgattagc aaattccacg
     7141 cgaagaacta ctactctcct gtaacgcttt atgtgaacta tggcgactat ttcgcaatga
     7201 gtacacgtga ttactccgag cagaaatccg aatctatctt gaacaaagtg atgacgattc
     7261 cgcaaattgc gaaaatcgtg ccagcaagcc gtgtaccgca aaatgaaatt ctcggcttgt
     7321 gcaagcgttc ggatgtgtac caagtgctta acggtatgcc gttagtgact cgtccgattg
     7381 cgcgccataa tgaaaccgat gattactcgt tccaaattat ggcagccgtt gccgtggagt
     7441 tcaaattcga cgataaaggc aatgctggct atatccagta cactaaatcc taaggcggtg
     7501 caaaatgaag tggctattaa cacacgatag ccacgagttg aagaaaggcg atgtttacga
     7561 aggcgaaaca ttaccgcttt ggcttgtggg caaagctatc gaaatcgaag aaaaatcctt
     7621 tgaagttgca acgccttctg atcacgctga cggcgaaact ggcgaaactg gcgaaactgg
     7681 cgaaactggc gaaactggcg aaactggcga aactggtcag aaaggcaaaa aagataaagg
     7741 caaataacta tggcagcaga aatagagcta tccgaagcgc gaacaacgct tgacgaactg
     7801 ggtttcactt cgccgaactc tctgcttgag ctttacgttc agcaaacgaa caccttagac
     7861 caggcgttga acaaatcggg gtacagcgaa gaaacacaga aactgatcaa gctctatctg
     7921 gttgctattc ttgcaatttc atctggggcg cgccgtataa agtcagaagg tgcgcctagc
     7981 ggtgcaagcc gaacgtttga gtatgatcca aacgcgctag acaaccttaa gtcggcgatt
     8041 cgctcaattg atccgaaagg ttgcgctgaa agtttgctac ccaaagataa agttgtcggc
     8101 tttttcgatg tggtcggagg ctgctaatgt caaatttatc gaattggtcc tacaccgcaa
     8161 aagccacgct ttggcaggct aaaggaaaga acgatgacgg cgttttagtt ttttctacgc
     8221 cacaaatcat ttcctgtgac tacggtgcag atagaaagcg cgcacgtttt gagattgggc
     8281 gtgaacaagc ggtcaaaaat gtgatctgga cggagttcgc ccacgccaaa ttaggcgatt
     8341 atgttctgat tggcgaaagc gagcaagccg atccgatttt ggctggcgca gaggaaatta
     8401 ttcatataca gcgctttgct gatacgttcg accgcaatcg tgatgatttt gcgctgataa
     8461 caggcgggta aaatggggat caaagtaaaa ggcataagac aggtcaagca gcggctgaat
     8521 caggttgttg gcgaggttca gagccaaaaa gcaactcggg caatgtttcg cattttgaat
     8581 gcggttgccc ctcttgcggc gcactatacg cctgttgata cctcaacgtt gatcaacagt
     8641 caattcactg aaatggaagt gaacggcaca cgcttgattg gaagagtggg ttattctgct
     8701 aattatgcgg cttacgttca cgatcctaat atcaagcaaa acttccgcaa gccttcagcg
     8761 aagaaagagt ttttgacttc cgcgctgaac gaatcaaagg ctacgatcaa atccattgtt
     8821 aaagaggagt tgtcactatg atttcttatg tcaaagcctt caaacaatgg ttagaggctc
     8881 actctcttgc agacggctat gttgtgcagc tttaccagtg ggaggatacg caaaaagcca
     8941 agcctgttat tgttattcag ccaaatagtg gttcgccgca agtttctgac ctgagcagcg
     9001 aacactatct gctaattagc cttgttgcag gtaaaaattc aggttacaca atcgaagagc
     9061 gagcaagggc gattatgtca aagattttag ttgagccttt cgcttccttt ggttacatcg
     9121 aatcaatggg cggattaccc gccccaattt tcactgaaga taatcgaatg atttttcgct
     9181 taccacttcg gattatttca acaaatcaag aggagtagtt tatgggttct ccatctccac
     9241 aaaataacgc agaaaatctc gtggtggggc gtgccgtagt tttagagtac ggtacgactg
     9301 atgcaaagcc acaagaaagc gaatggaagg ttgcgggcgc aatgacgaca aagagttggg
     9361 attttagccc aaattcggtt acatcagagg ctgatgatgc tggcggcttc cctgaaacct
     9421 taattacaaa ctcagacttt agtatttctg gtgacggtga gtggcgcaaa cgaccaaaat
     9481 cgaaagaact aggcatcaaa gatctagttg tgttatacgc aaatgcggta aaaaatcgca
     9541 cccaacctta catttgggtt cgtttgaaat acgcaggctt aacaattctc ggaaaaatgg
     9601 ttatcactgc attaagtagc gaagccccaa ccaatgactt agtgaaattc tctatagagt
     9661 tcaaggttgg cgattcaagc actatcgaaa ttgctgcagc gtaaaaaatc ccaccctcta
     9721 taacaagagc ggtgggatta tcattatcct agggatagtt gtaggggctt tcctaagcta
     9781 gccaaaatac gaccaatagt gtcgattttt gtaatatggc gaggggctaa aattcgctgt
     9841 acttctggcg gacggatatt agttaatcgg gcaatttctg ccttgcttac cgcttgttct
     9901 tgcattgtat tatgcaaaag cacttttgcg tagatgctct ctggcataaa cacaggcact
     9961 tcgtcggtat ttactgggcg agtgagcgga aagcgtctat cttcatcgaa ataaatttca
    10021 acacaagata gtagcacgtc ttctgccatt tccattgctt cttcaaatgt atcgccttgg
    10081 gtgatagctt ctggcaaatc aggaaatgtc actacaaagc ccccttcttc agcgggggta
    10141 aataacgctg gataaaacat attttctcct tattcaaggg tgtagtgaaa gccccttaac
    10201 atcaggggct ttatattatt ttaagcctag ttgcttttta accccttcca ctaagcctgt
    10261 ttttaactct tggcttgggt gtttggggag gtggcttctt ttgcccttgt agtagagttt
    10321 caaatgcttt gatccatttt caacctctac cccattagcc tttagccacc ttaggaattc
    10381 gctttgcttc actacctcct cctatttgtt taacttgggt tcattatatg caaaaatgct
    10441 aactttgtca acagaaagtt agcaaaaatg ctaatttttt ttgttgaggt gaaaatggtt
    10501 agctatccaa ttactgaaat tggtgaaatg cttattgcaa ccgatgggcg agacttttta
    10561 ttcagaccga gtttcaaaaa tatctacaaa attggaagcc cacaagaaat tgtaaaaatc
    10621 tatgcactat tgcacggctg tgagattcga gagatattgc cgcacatttt aaccaaatcg
    10681 gagtctcatc aatcttactt ttggtcagtg ctgaattcgc ctgtttttgg cagaaaaatt
    10741 ctgcaaaacg caatgatcgt gatgtcgtgc tgttgcgatg atgatatttc cctgttgatt
    10801 ggcgagtggc tgccgtcaaa gtctggcgtt aggtacaagt tgggtaaaat gccacctgag
    10861 acaattatca attttgcaaa aaatttaatg ggtcacggag tgattggttg ctgcgaattg
    10921 ccaaagaaag aacaatctgc aaaaaatgaa ttttcagaaa gttttgatgc tgttgagtac
    10981 ataagtttag cccgaactca tttcaatatg agccgcgaag acgctgaaaa tctcacgatg
    11041 accgaattgc agcaacttct aaaaagtcaa atgcctgccg aaaataatag ctatggacag
    11101 ttcaccgaag aagagtacga cagaattatg gcggaatatg agaaaagaag agcggcttaa
    11161 atagccgcta acatttaaaa gaacctacct gatagaacgg gagtgaaatc cttgtaatgt
    11221 gctgaataaa aaagctctct tatgtcattg agtagctcaa attcatcttt ggatcttgcg
    11281 ttgcagattg ccacatagtc atctacgcag gataaaatac gttcaatact gacttctttt
    11341 atccagcata cttcttggtt ttcattcagc cagttggcaa agtcttgttt agtgcagtct
    11401 tttttcataa gttctccttt ttgattattt gcaaaaaaaa tcatatcaaa tcatccgttg
    11461 ttatctattg gcgaaaataa tttttgcgac acagatcgca aaaataggtt ttgacggtgg
    11521 aaaaacgaat cttaattcgt agaatggtaa aatttcttta tttttaaggt atttttatga
    11581 aaaaaatgat tgtttttgta gcttctgttt tgtcatcttt tgttattgca tcggattggg
    11641 aaataataga agcggctcaa aataaggtga aagcagagct tataagaaaa tcagaaaaaa
    11701 aagcagagtt atgtttaaat gttgctcagg ctgtcttaat tactaatcaa aaagtgcaaa
    11761 aagatacttt ctcaatgtgt ggtgaatttt cgacagagat tgtcttttct gactctaaag
    11821 catatagcct tgcagtatgt ggaaaggtta aaggtaaaga tattatcgga aatccgatag
    11881 agagcgacta tatataccaa agagcaacta aggattttta ctttaattat aatggcaaaa
    11941 aatcagctta ttatgatcct caatctgatc ttgcaaggct tcaagaggtc tcagactcta
    12001 tgtttaatgc ta
//
LOCUS       DANLUT010000068        11954 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLUT010000068 DANLUT010000000
VERSION     DANLUT010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11954
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..615)
                     /locus_tag="PXB38_001412"
     CDS             complement(<1..615)
                     /locus_tag="PXB38_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353733.1"
                     /translation="MAEILFRSCLCAMQSVFFIYLQFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NAKAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFV"
     gene            698..1159
                     /locus_tag="PXB38_001413"
     CDS             698..1159
                     /locus_tag="PXB38_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5353734.1"
                     /translation="MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILD
                     LNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLS
                     TDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            1172..2065
                     /gene="murQ"
                     /locus_tag="PXB38_001414"
     CDS             1172..2065
                     /gene="murQ"
                     /locus_tag="PXB38_001414"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL5353735.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(2151..3095)
                     /gene="prmB"
                     /locus_tag="PXB38_001415"
     CDS             complement(2151..3095)
                     /gene="prmB"
                     /locus_tag="PXB38_001415"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5353736.1"
                     /translation="MFKYNTALLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            3188..3733
                     /gene="smrB"
                     /locus_tag="PXB38_001416"
     CDS             3188..3733
                     /gene="smrB"
                     /locus_tag="PXB38_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL5353737.1"
                     /translation="MNDTLLADEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            3797..4282
                     /locus_tag="PXB38_001417"
     CDS             3797..4282
                     /locus_tag="PXB38_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL5353738.1"
                     /translation="MSEQTFHQITALLDSHRARYRVVEHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(4284..5018)
                     /locus_tag="PXB38_001418"
     CDS             complement(4284..5018)
                     /locus_tag="PXB38_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5353739.1"
                     /translation="MEKHFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKNLYAYG
                     TSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREILWGFD
                     RQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVIELLPI
                     EGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            5190..6053
                     /locus_tag="PXB38_001419"
     CDS             5190..6053
                     /locus_tag="PXB38_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL5353740.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            6216..7739
                     /locus_tag="PXB38_001420"
                     /pseudo
     CDS             6216..7739
                     /locus_tag="PXB38_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            7794..9644
                     /locus_tag="PXB38_001421"
     CDS             7794..9644
                     /locus_tag="PXB38_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5353741.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTENKPTFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCEVDVAMSGEETYQHFA
                     QDSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(9740..10294)
                     /locus_tag="PXB38_001422"
     CDS             complement(9740..10294)
                     /locus_tag="PXB38_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL5353742.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(10361..11842)
                     /locus_tag="PXB38_001423"
     CDS             complement(10361..11842)
                     /locus_tag="PXB38_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL5353743.1"
                     /translation="MKMKNFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGN
                     AAVADNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTA
                     IVPNAYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLNAVNVNFSAAYD
                     LGYGFVLGAGLNAVHAKAELERFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAG
                     IAAGNTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNSIQNTNASSTIHKLK
                     GDKWALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAE
                     MDGTLRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTEN
                     FNDSQRIALGLSYDVNEILTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTP
                     NLSADVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         3706 a         2216 c         2616 g         3416 t
ORIGIN      
        1 tacaaaaata aattgttcat ttagtattcc ttttaatgca ccaaatttaa agcgttcgca
       61 ttgcccattt gcacattcat gtgttttggg tgcggtttta aacataacga atagcataat
      121 aatttcaatg cagcagctaa tccaaataag ccattctgct ttacggtaga aaataaatgg
      181 aatagtaagt aatggtgcta ccatcgctga caggcttgat accttcagaa atttaccttg
      241 agccttagtt ttgagttggt aactatctcc ggtatcttga atattggcta ataagaatgc
      301 tttcgcattg gtactaaata aggtgctacc gagcccgaag aaaaaggtag caagtaatag
      361 cagagggtaa ttttttgttg tcagtaataa aatgtaagct agggcatcga gcaaacagcc
      421 aagcatcatg atagggtaac gtccaaaact atcaccccaa gaacctgcaa aaagggaaaa
      481 tgcttggctg gtaaagacca acaaagaaaa tgcagttgca atttggctgg tttcaaagcc
      541 tttgtagaat tgtaagtaga taaaaaatac gctttgcatt gcacataagc aagaccggaa
      601 aagaatttcc gccataaaat gatattttgg atattcatag ataatattta atgagaaaaa
      661 tgatttctaa tataactaaa tttaataagg aagcacaatg agaaaaatca aattattgca
      721 tgttatttta tctttaatat tagggctttc tgcggcagcg attggaagtt atccggcaat
      781 aaaagagatt ggcgaggagc gggcaaaaaa acatcaagat atattagatt taaatagaga
      841 actttatagt gcaatggtga accgtgattt ttcggctttg caaacattac taagcgatga
      901 ttttgagctt tattcatcaa caggtgaagt gattgataag caagaatgga tcaaattaat
      961 ccaaaagaga gtattggaat ttgataaggt tgatttgcta tctaccgatt ttcaggggaa
     1021 tcaatcatct ggattattaa gagtaaatgg tgagtttttt gggatagagc gggataatgt
     1081 ggtggtagaa atgaatattc gaaccattgt gagaaataca gaacgccaaa ttaaatgtat
     1141 tgtgattaaa gaggtttaag tgtcgcaact attgaatgcc ttagggcaga tgattaccga
     1201 acaacgtaat ccgaattcga tgaatattga ccgcctttca gcgttagata tagtccaagt
     1261 catcaaccaa gaagacaaac aagtagcgat tgcggtggag cagtgcctgc ctcaaattgc
     1321 acaagcggtg gaaaaaattg tgcaagcctt tgagaaaggt ggacgattgg tttatgtcgg
     1381 tgccggcacg agcggaagat taggggtgct tgatgcttcg gaatgtccgc ccacttatgg
     1441 cgtaaaacct gaaatggtgg ttggattaat tgccggtggt gagcgggcat tacgtttccc
     1501 gattgaaggg gcggaagata atcgtgagca aggcaaagta gatttacaag cggtcaattt
     1561 tagcgaaaaa gatgtattgg tcgggattgc agccagtggg cgaacgcctt atgtgttagg
     1621 ggcgatggaa tatgctaagc aacttggtgc gaccacggtg tcgattgcca gtaacccaaa
     1681 ttcggcaatg gcacaaattg cggatattgc gattgaaacc gttgtcgggc cggaagtgct
     1741 aaccggttcc agccgtatga aatccggcac agctcaaaaa ttggtattga atatgctcac
     1801 cactgcgtcg atgattttaa tcggtaaatg ctaccaaaat ttaatggtag atgtgcaagc
     1861 aactaatgaa aaactcaaag ctagagcaat tcggattgtg atgcaagcga cagaatgtga
     1921 acgagaagtg gctgaagata cactaaaatt agctgaaaat aacgctaaat tggcaattat
     1981 gatgatttta ggtaacttag ataagcagaa agccgaagat ttattaagcc aaaatcaagg
     2041 gcgattacaa aaagcgttaa aatagaagta tgtctgctct ctccccttgt gggagagaga
     2101 cagatcaatc attcattcag aatgattgat cagagagagg ggaggcagat ttaagcaaat
     2161 aaatggcgat gtttcactag ttcttctttg gttaaactga acacccctaa gccaccgtgt
     2221 tcaaattcca gccagttaaa cggcacactg gggaattgtt cgattaaatg caccatactg
     2281 ttgccgactt cgcagactag cacgccatca tcatttaagt aatcagcggc ttgagcaaga
     2341 atccgcttgg ttaaatctaa cccatctttg cccgagccaa gagctaatgc cggctcgtga
     2401 tggaactctt cgggcatatc gcctaagtct tcttcatcaa cataaggcgg attagtcaca
     2461 attaagtcgt atttatcttg cggtaaattg ttaaacagat cggaacagat cgggaaaact
     2521 cggtgagaca cctgatgacg ctcaatatta atttgagcaa cgtctaaggc atcaagggaa
     2581 agatcaaccg catcgacttc tgcttccgga aaacgctcgg cacaggcaat cgcaatacaa
     2641 ccgctgccgg tacacatatc taaaattcga tgtggctcgt ttttgataat gcctttaaac
     2701 ccttttttga tcagctcacc aatcggtgaa cgtggcacga tcacacgctc atcgacataa
     2761 tattcaccgc cacaaaacca agccgagttg gtaaggtatg ctacaggttt gcgagagcct
     2821 aaacgctcac agattaaatt gatgatacgt tctttctcaa ctcgagttaa gcgagaggaa
     2881 taaagtgttt ccggtacatc aaacggcaaa taaagccctg ccaacactaa ttgttgtgcc
     2941 tcgtcccacg cattatcgta gccgtgcccg taataaagat cagaggcatt aaaatagcta
     3001 tacccccaac gcatcatatc ttgaatagtg actaaatcat tcacaatggg cagggcggaa
     3061 atttcatcaa gaagtgcggt attatattta aacattggcg tgcctttttt cgtattgtta
     3121 aaatggctgt gttataccac attttgcttt gtgttagaat gtaaaaatga ataagaagga
     3181 aaagataatg aacgatacgt tattagccga tgaatttgca ttattcagag aggcagcaaa
     3241 aggcacgaaa aagctgacac aaaatacctt tgtgccgaaa gcggaacctc gcaagaaatt
     3301 gcaagaattg cgagaattaa aagaaaaagc tgatacagaa ttttatttct cggatgaata
     3361 tgagcctttg ctgaaagaag aaaatgaaaa agtgaaatat ctgcgagaag atgttgatcc
     3421 ttatattctc aaacagttac ggcgaggcga tttccaaccc gagctgtttt tagatctgca
     3481 tggtttaact cgagaaaaag cgaagaaaga gttggctgcg ttgattttag cctgtgagcg
     3541 ggaaaaggta tattgtgcca gtgtgatgac cggctttggc actcgcacgc tcaaagatca
     3601 aattccacgc tggttggttc agcacccaaa agtaatggcg ttgcaccagg ccccgaaaga
     3661 gtggggcgga gatgcctcta ttctaatttt ggttgagcag cctgaaaatc ctgaaaaaat
     3721 gtttgggcgt taaaattcgg ctgaattgcc aattttttat taaaaacgac cgcttgtgta
     3781 tcattaagga gaaatgatgt cagaacaaac tttccaccaa attacagcat tattagattc
     3841 gcaccgagct cgctatcgag tggtagaaca tccttctgcc gggaaatcgg aagaagtggc
     3901 aaaaattcga ggaacagaaa tcgggcaagg ggcgaaagcc ttagtttgca aggtaaaagg
     3961 caatggggta aagcaagctg tgcttgctat attacctgct gattaccaag cggatttaac
     4021 aaaaattgca gagcatcttg gtgggttaag agcctcactt gccagcccgg ctgaagtggc
     4081 agaattgacc gattgtgtat ttggggcaat tccgccgttt agctttcacc ccgatttatt
     4141 attggtggct gagccaagtc tgtttgagcg ttatgctgaa ttagccttta atgccggtac
     4201 gttggaacgt tcgattattc tgaataccga ggattaccaa aagatagtta atcctgtgtt
     4261 ggttcaattc gccaaaagct aggttatggg gcgaaaaact ccacgatttt gccaatagcg
     4321 atatccatta atttagggtt agaaaaagcg tgatctgccc cttcaatcgg gagcagttca
     4381 atcacgttat tatcggcaaa ctgctgtgaa gtgcttaacg ccaccatttc atcttccgtg
     4441 ccgtgcagaa ttaaaatttg ctcggcataa tccaaataat cgttttgggt aatatcggtt
     4501 agctcatcaa aaaaggcttg gctgattttc atctggcgat caaaccccca caaaatttct
     4561 cgccctttgg caagtttttg ccgttcctct tctgacaagc ggttcattaa cgaatggtag
     4621 atttgtactg ccggtgcccg caatgcaatt ttccgaaacg gattgccttt ttccgccaga
     4681 tatttcaagg ttaaatagcc gccaaaacta gtgccgtagg catacagatt tttagcattc
     4741 aggctggttt tggcataatc aatcaccagt tgcagataag taatggattc ctcaaccgag
     4801 agttttttac gggcatcatc accgtggcaa gggaaatcaa aggcaagggc agcgtagcta
     4861 aggcgttccc caaatttggt attcgatttc agatctttag acgaaccaaa gccgtgcaac
     4921 acaatcacta cattctcgat ctgctgcaat tctttttcat aaaacagttt acagcgaatg
     4981 ctgagaccct gttcattaat ctcaaagtgt ttttccattt tatgttaagt attgaaattg
     5041 aagatgacaa aattttagca ctatttgagt gcaagcggtc ggatctctcg caaaatttgc
     5101 aaattttccg gtaaatttaa ccgcttgtac tagccaaaat ttaagcatat ttatagaata
     5161 cagccttcgt ttttaaaagg agaaatgaaa tgttacaact tattttagcg attttatgta
     5221 gcgtgactgt aggcgtgttg attaaattcg cccgccaaaa agggattcgt atcgaccaaa
     5281 gtattgcggt gaactatatc gtgactacca cgatgacgtt tttattacta aaaccggatt
     5341 accaagggca gtcgattacc gatattattg ctaataaccc gacttcctat atttttgtga
     5401 ttttaagtat cacattgcct actattttct tggtgcaagc aaaagcccta gagtttgccg
     5461 gtattatccg aaccgatgcg gcacaacgtt tatcgctgtt cctgccgatt ttggcggcat
     5521 tcaccatttt tggtgagcag gttacgcaaa ataaattaat tgcacttctg ttagctttcg
     5581 tggcactcgg ttgcttatta tggaaaggca atcagggaat ggaaaaaggc ggaaaaattg
     5641 cgattatcag ccttgctctg gtttgggtag gctatggcgt gaacgatatt ttatttaaac
     5701 agattgccaa atcaggctct gctttccctg tcaccctttc gattgccttt atcggtgcag
     5761 gctgttttat gtttatctat ttgctactta aacgcactca atggcacgtt ccaagtgtct
     5821 taaccggctt attgctaggc gtgttgaact tcggcaatat tctgttctat attcaagctc
     5881 accaagccat gaaagatgac ccaactttag tcttcactgg aatgaactta ggggtaattt
     5941 gcttaggcac tttcgttgga gcattcttct ttaaagagaa aatccacaaa gtgaactact
     6001 taggcgtggc gattgcgatt gtggcgatta tttgcttgtt ttattggcgg taaatatact
     6061 ttccaaaatt aagggcgaac attatgttcg cccttaattt ttgagtaata tagtgtaaaa
     6121 tattcaataa attcgaccgc ttgttgtacc gattcatatt tcataaagga caaaaaatga
     6181 agctaaaagc cttatctaca ctcattgcct cttcaatgct atatagtcag agttttgctg
     6241 taccgccgga aaaaacagct gaagagccac agcccttttt caataaaacc gaatctgggt
     6301 atgatttagt ctttaatgat caaaactatc gtttaattga aacggaatta aatggcgaga
     6361 aaatccaatt ccgtgccttt gagcggattg tgtatgtgaa caatccgatt gagccagatt
     6421 accaaacaat taatctgtat gtgccggaag cttactacaa taatggcgaa atcaatggct
     6481 accaagcgga taccgccccg atcttcttgc caaattcagt gggggctata tgccggcaaa
     6541 agcggcaagt tatgataaaa aaagacgtga cggttcacca ggtacgattt tggtggcgtt
     6601 atctaaaggc tatgtggtgg caagtgtggg agcaagagga cgcacgctac aaaaagaggg
     6661 aaaatacacc ggcaaagcac cttttgccat tattgattta aaatcagcag tgcggtatct
     6721 gcatgctaat gatgaaaaaa tgccgggcga tgcaaataaa attatctcta acggcaccag
     6781 tgccggagga gcattatcta ctttgttagg agcttcagct gatcattacg actatgagcc
     6841 ttatttgaaa gaggcggggg cattgaatgc cagtgacaaa atttttgcag tttctgccta
     6901 ttgcccaatt accaaccttg aaaatgcgga tatggcgtat gaatggcaat ttaatggtgt
     6961 caatgaatat agccgaatcg atatgagtcg attaaatgca gcagagttta acgaccgctc
     7021 aaaaccaaag ccgaaaattg aaggctcgtt aaatgaggcg gaaattaaag tttctaatga
     7081 attagcagaa cgctttccga cttatttgaa cagtttgcat ttggttgatg agaaaggcaa
     7141 tcctttaaca cttgatccaa aaggcaacgg ctcgtttaaa gattatttat ctgaagtggt
     7201 aaaaacggct gcaaataaag cctatagagg tttagttcaa gatagcgaag agcaaaaagc
     7261 ctttcaacaa attagttggc tttcatttga gaaaggcaaa gtcagcagtg tggactggtt
     7321 tggttatgtg ttttcagata aacggatgaa atcaccacct gcatttgatg cgttaaatgg
     7381 aagttcgggc gagaataatt tatttggcac agacacggaa aataaccgcc attttacgct
     7441 ttatagtgcg gaacgttctg ccaataaaga tctcaattta gccgatccgc aaatcgtgaa
     7501 acggatgaac ccgatgcact atttggataa ccgcaaatgc tgcggaacat tggcggatta
     7561 gggtgggaac ggcagataga gatacctcgc tggcaatttc tgcaatctta gcaataaaac
     7621 tgcaaatggc aggcaaaaat gttaattatg aaaccccgtg gaatgtaccc cattcaggtg
     7681 attatgatgt aaatgaatta ttcctatggg ctgatgagct agtcaaaggc aaaaagtaaa
     7741 aaatagagta aaataaagca gatctgatgg tctgtttttt gttttgaggt cgtatgcaag
     7801 ttaaaaaatt tagccaaaaa tatattaatt gggtattaaa gctagggcgg ttaaaagctt
     7861 ctcttttagg cttttttatg gtcgctcttt cggcaatttt aattcaaagt agcttaacct
     7921 atctttttat tgggcgagta gtcgtggtgg atattttacg ctccatcgct tttggtttaa
     7981 tttctgcgcc ttttgtgctt tatttcttca cgttattggt ggaaaaactt gaaatatctc
     8041 gcttgaaatt agaaaaagca gtaagagatt tggaagaact ccgggaacaa gatgcctatc
     8101 ttaacgctaa attagaaaaa aacagccgtg ataaaagcat tttaatggcg accattagtc
     8161 acgaacttcg tactcccctt aatggaatta tcggcttgag ccaaattttg ttagatgata
     8221 aaaccaccga aaaacagcaa gaatatctaa aaactatcaa tatgagtgcc actgcattgg
     8281 ctcatatttt tggcgatatt attgatttag aaaaaattga tagtagccga attgaattgg
     8341 taagaaaaga ggtggaattt gaacaactca ttcacgatat tgctaatttt gggcatttta
     8401 tggcgggcaa taagcagatt aattttgaag tgaagtatcc gcctgatttg ccgaagtata
     8461 tctatatcga ccacgcacgc ttgagccaaa ttttatggaa tttgatcagc aatgcggtga
     8521 aatttacccc tgcaagcggt cgaattttgc tggaaattta ccaattagat aaagaacagt
     8581 ttagctttgc ggtgacggat tcaggcatcg gtattccgga aaaagatcaa cgcaaaattt
     8641 ttgatatgtt ctaccaagcg gaaaactcta aagagaaaaa agcgcaaggt agcgggattg
     8701 gcttatcggt ctcgaaacgc attgcgaagt taatgggcgg tgatttggtg gtggcaagcc
     8761 aagaaaatca aggctcaact tttaccctca ccgtgcaggc ggaaagcacc gaaaacaagc
     8821 cgacatttgc tattcagcag cattccctta aggtgttatt ggtggaagat atcgaaatga
     8881 atgtggtggt tgctcgagca atgttggaaa aaatcgggtg tgaggttgat gtggcaatga
     8941 gtggtgaaga aacgtaccaa cattttgcac aggacagcta cgatctgatt ttacttgata
     9001 ttcaactgcc ggataccacc ggttttgaaa ttgcacagca attaagattg caatatgaaa
     9061 acgaggaaat tgactattta ccgctgttgg ttgctttgac ggcaaatgtg atccaaagcc
     9121 ggcaggagta ccaagcacaa ggtatggacg atgtgctaca caaaccgctc tctttagatg
     9181 aattaatgcg ttgtctcaac caacattttg gagatgattt tttgcaaaaa aatgaagaaa
     9241 aacagccgct tgtagagaga ggttctgaga atttacctta tagcattaca attcttaatg
     9301 aattgattgg ggtaatgggg aaagagaatg tgcttgccaa tatggattta tttgctgatt
     9361 taatgcccac ttatttggca aatttacagc gttatttaag tgattggcaa accacaaatt
     9421 ctgtggaaag ccgtaaatta acggcggacg aggctcataa gattaaggga gcattagcat
     9481 cagtcggatt acatcagcta caacaaactg ctcagcttgc tcaatccgat aacggcgagc
     9541 agtgggagca aaatattgca cactgggtgg aaatgatttg ttccaaatgg cagatggatt
     9601 tgcaattagc taaggaatat gttagaagca agggggacat ttagtaaatt tgaaatgtta
     9661 cgatggtgca agcgtccacg cttgtaccaa ttttaatatc tgaagcacaa gcgtggacgc
     9721 ttgtgctatc aaaacgtatt taccatttct tggttttcgg ttttacaaat tcaatgcctt
     9781 tatctttata ggtaatatct tccagctgta atagaaaacg cttattcggc aagccaccac
     9841 cgaatccggt taaggcttga tttttcccta ataccctatg gcaaggcact aaaatcgaaa
     9901 tcgggtttcg cccaactgca ccgccgacgg ctcgcatcgc acttggcttg cctagttggg
     9961 tggcaatttc gccataagta gtagtttgcc cgtaagggat ttcacgcaaa attttccaaa
    10021 ctgattgctg gaatggagtg ccttgcgggg caagaaaatc caactgctga aaatccaatg
    10081 gctcgccggc aaaatagcgg tctaaaattt ctttggtttt gcaaaaaatt tctaaaatct
    10141 gaccacttgc agcttgagcg gaaaggaaat tatcaagcga ggtggtttgt tgctcttgcc
    10201 ctagctcaat gtaaatcaag ccttcttctg tggctaaaag caataattgc ccgatagggc
    10261 ttgggtagta atcgtaataa atttgagatt tcatgttttt atgccaataa aaaaagaggt
    10321 gtaattgatt ttacacctct ttaaacctta attcatcaaa ttagaatttg tagtttacgt
    10381 ttaaaccgta aagatttgca cgagctttgc tcttgaatgt ggctaaaccg tcttcagaga
    10441 aggtcaggtt gctaccacga agatgtgagt aacctacatc agcagatagg tttggcgtga
    10501 aacgcacggt tgcacctaca gaataccaag cacgatcagt gtccggaatt gagattgatg
    10561 gatgagttac acttgcactt tcatcaaatg ctacacctgt acgcaatgtt agtatttcat
    10621 tcacatcata agacaagcct aatgcaatac gttgagagtc attaaagttc tcggttttgt
    10681 gcaataggcg gttaccttgc atatcataag cttctaggct ttggaatttg ctccagtctg
    10741 tgcgtttata gctgtattgt gcagcaagtt tatcggttag tttgtggtaa cctgacactt
    10801 cccagaatgc cggtaggcgt aatcttagtg taccatccat ctctgcaccg ccggtaatgg
    10861 tatctaccat cttaggaata actacaggaa cggtattaga atatttgcct ttaaatttaa
    10921 gatcaatttc agagtggtaa gtaaaaccta aacggtttct ttcattgata ttataaacca
    10981 agccaacatt ccaacccaat gcccatttat cgcctttaag tttatgaatt gttgaacttg
    11041 cattggtatt ttgaatgcta ttaaccaaac gttctaattg agcagaattc gtgatggttt
    11101 ggtttaaatt ttgagatttt aataaaccgt ttacttgagc taatacttgt gttttttgag
    11161 cttcaagagc ggtattacct gctgcgatac ctgcctcaag agcttttaaa ccttgaattg
    11221 cactttgtac ttgtactttc ttgtcttcca aaaattgttt agctggagca aaacgtgccg
    11281 caccggcacc taagaaacgt tctaattctg cttttgcgtg tactgcattc aaacctgcac
    11341 ctaatacaaa accataacct aaatcataag ccgcactaaa attaacattc acagcattta
    11401 atgatgtacg accacctaag aaaccagcag aatagttagg gtcaaattca gatatcaaac
    11461 cataatttac atttacgcca ccaccaatag aaaggcgctc attgataggt gaaacgatat
    11521 aagcatttgg aacaatagcg gtaggaatga catttttatg tgaggcatct gcacctgtag
    11581 cattgagctt tccatcaata tttacatcag catctacgaa aataccaccg gcagaaattt
    11641 cggtttgttt aaataacgtc attaacgcag ggttggttgc aacaacagaa gcgttatcgg
    11701 ctacagcggc attacctgcg taagctctac ctaaaccgga tgttgaaatt tcagctaatt
    11761 ggaatgcggc agcagatgca ccggctgagc tgaatgctac taatgaagcg attaaagttt
    11821 tgctaaagtt tttcattttc ataggaaatc tcttaaaaaa tatatatttt agaatgaata
    11881 attcataaaa gttataagaa gtaagaagaa agtgcagatt ttatgtgtcg aagtactctc
    11941 tatcaattaa attt
//
LOCUS       DANLUT010000069        11938 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLUT010000069 DANLUT010000000
VERSION     DANLUT010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11938
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            52..1503
                     /locus_tag="PXB38_001424"
     CDS             52..1503
                     /locus_tag="PXB38_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5353744.1"
                     /translation="MKKIVSTLLILTSNLAFAETIPAQLQEKMDNQRMQENPTLEKPE
                     PQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQLP
                     ASEQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENRENE
                     AAEAQFYKLQAGKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGTT
                     YGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRES
                     LGLGYQNAKQKITLLPFFEQMWYASGSSQTESTKRYSNAGGVNARWQYWITPQWQSAI
                     SYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRRG
                     VSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKGI
                     TPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(1551..4148)
                     /gene="mutS"
                     /locus_tag="PXB38_001425"
     CDS             complement(1551..4148)
                     /gene="mutS"
                     /locus_tag="PXB38_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL5353745.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNAQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            4298..4861
                     /locus_tag="PXB38_001426"
     CDS             4298..4861
                     /locus_tag="PXB38_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL5353746.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            5035..5664
                     /locus_tag="PXB38_001427"
     CDS             5035..5664
                     /locus_tag="PXB38_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL5353747.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMATAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAAPMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            5812..6441
                     /locus_tag="PXB38_001428"
     CDS             5812..6441
                     /locus_tag="PXB38_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5353748.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAEAVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAGASIPPFATLVFEVELLDIL"
     gene            6507..7022
                     /locus_tag="PXB38_001429"
     CDS             6507..7022
                     /locus_tag="PXB38_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL5353749.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(7070..8124)
                     /locus_tag="PXB38_001430"
                     /pseudo
     CDS             complement(7070..8124)
                     /locus_tag="PXB38_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009500034.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            8321..9679
                     /gene="mnmE"
                     /locus_tag="PXB38_001431"
     CDS             8321..9679
                     /gene="mnmE"
                     /locus_tag="PXB38_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL5353750.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            9680..10945
                     /gene="tilS"
                     /locus_tag="PXB38_001432"
     CDS             9680..10945
                     /gene="tilS"
                     /locus_tag="PXB38_001432"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL5353751.1"
                     /translation="MTLFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSDELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELLYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(10935..11828)
                     /gene="xerD"
                     /locus_tag="PXB38_001433"
     CDS             complement(10935..11828)
                     /gene="xerD"
                     /locus_tag="PXB38_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL5353752.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGGVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         3596 a         2776 c         2564 g         3002 t
ORIGIN      
        1 actaaaggct attgaaaaat agccttttct attcaaataa aagatagctt tatgaaaaaa
       61 atagtctcaa cgcttttaat ccttacctca aacctggcat ttgcggaaac cataccggct
      121 caacttcaag aaaaaatgga taaccagcga atgcaggaaa accctacatt agaaaagcct
      181 gaacctcaag ccaaaccaca agcggttaat gcacaggctc accggcaatc gatctctatt
      241 tcaagccaac agctgcttca acagcctgag ttgctcaact cggcaatgct aactgcgttg
      301 gtcactaacc acactgagaa tgttcaattc ttactgccta tttatcaaca attacccgcc
      361 agtgaacaaa acagcgaagt tgtacaatgg gcggaggcag ttaatgccaa agcaaaacaa
      421 aattattcag aggcaataaa aggctaccgt cagctactgg caaaataccc tgaaaatcag
      481 ccaatccgta tgcaattagc ggttgcattg tttgaaaatc gggaaaatga agccgcagag
      541 gctcaatttt ataagttaca agcgggcaaa ttaccgcaag aaattgcaaa tgcggtcaat
      601 agctatttgg aggcgattgg caagcaagat caatggagtt ttcaaggcgg cttaacctat
      661 ttgaatgacc cgaatatcaa caatgctcca aatgcaggca cgacctatgg caactggact
      721 gcaccgaaaa aagaatccgc ccaaggggtc ggctttcact ttgaggcgga taaaaagtgg
      781 tcttggggca atggtttctt ccacgagttt cgtttaaacg gaaacggcaa atattactgg
      841 aataacaaaa aatataacga atattcgctc agagaaagcc tcggcttggg ttatcaaaat
      901 gcaaaacaaa aaatcacctt gttgccgttt tttgagcaga tgtggtatgc cagtggctca
      961 agccaaaccg aaagcaccaa acgctactcc aacgcaggcg gtgtgaatgc ccgctggcaa
     1021 tattggatta ctccacagtg gcaatctgca atcagctacg aatatgcgga acagcgttac
     1081 actcgccgcc aacatttaga cggcaattat cattttattg ccccgagcct ctatttttac
     1141 cctaacagcc ggcaatattg gtttgtgggg gcgaatttta accgcaccag cccccgtgat
     1201 ttagatgata gctttattcg ccgaggtgtt tctattggtt ggggacaaga gtggaaaaac
     1261 gggctttcaa cccaattaag tgccagctac gcccgcaaac aataccgagc cccaatgccg
     1321 attttccaaa ttacacaacg taacagtgaa tatggtgtgc aagccagcat ctggcacaga
     1381 gccttgcatt ttaagggtat tacccctcgc ttaacgtggc aatataacaa ggtaaaaagc
     1441 aatcatagct tctatagtta tgacaaaaac cgtgtctata ttgagttttc acatacgttc
     1501 taaacaaaaa cgccccttaa acggggcgat ttcttagtta ttttttcaat ttaccccaac
     1561 aattttttca agcgatacaa ctcgtccaaa gcctgtcttg gggtaagttc atcaggctga
     1621 agggctttca gggctttttc aacttcattt tctactacaa gcggttgaat tgcttcattt
     1681 ttttgcaaat caaaaccatc ggaaaacaac aaatccgcct gtggatgttc gtttgcttgt
     1741 ttggtttggt gggaaatttc ctccaaatgt gccaaacgct gctttgccag ttgaatcact
     1801 tgctttggca cacccgccaa ggctgccacc gccaagccgt aacttttgct ggcggccccc
     1861 tcttgcaccg agtgcataaa cacaatactg tcttgatgtt cacgcgcgtc taaatgcaca
     1921 tttgccaccc ctttgagctg attcggcaag ccggtaagtt caaaatagtg ggttgcaaac
     1981 aaagtgagtg actgggtttt cttcgccagc cattcggcac acgcccacgc tagcgataaa
     2041 ccgtcatagg ttgaagtgcc tcgcccgatt tcatcaatca acaccaagct gttttccgta
     2101 gcttggtgca gaatatttgc catttcggtc atttccacca taaaggttga gcgaccagag
     2161 gctaaatcat cgcttgcccc aatacgggtg aaaatgcggt caatcgggcc gatttccgca
     2221 ctttctgccg gcacaaaact gccgatataa gccatcagcg taatcagggc aatttgtcgc
     2281 atataggtgc ttttaccgcc catattcggg ccggttacaa tcaataaatg ccgttgggca
     2341 tttaaaaaca ccggattggc aataaacggt tcggttaaaa cctgctccac caccgggtgt
     2401 ctgccgcctt tgatattcac cattcgcatc gggctaaagc tcgggcaaac atagcctaaa
     2461 ctatcagctc gctcggcaag gttggttaag acatcaagtt cagacagcat catcgccgct
     2521 aattgcaatt cgcctaagcg aggcattaac acatcaaaca gttcatcata aagctgtttt
     2581 tcaagggcaa gcgatgcccc ttttgctttc agcactttgt cttcgtaagt tttcagctca
     2641 gggataatat accgctccgc atttttgagc gtttggcggc gaacatagtg aatcggggct
     2701 ttgtgtgctt gcccttggct gatctgaatg taatagccgt gaaccgcatt aaagccgatt
     2761 ttcagcgaat caatgccggt gctttcacgt tctctgatct ccaaattttc cagatattgc
     2821 gttgccccgt ccgaaagttg ccgccattcg tcaagctcgg cattataacc ttctgcaatc
     2881 accccaccat cacgaatgag ttgtggtggg ttttcgataa tcgcccgctc cagcaaatcg
     2941 tgtaacgggc tgaaatccgc cagttgagcc aaaagctgat cgatactagc ggtcagattt
     3001 tgtgaatttt ttgcaatttc cggtaactga gccaatgcag tgcgtagtcg ggtgaggtca
     3061 cgagggcgag ccgtacgcaa cgccactcgg gcgagaatcc gctccatatc gccgacttgt
     3121 tgtaataacg gctgtaaatc cgacattcgc tcatattgta tcaatgctgt tatcgccttt
     3181 tgtcgggctt gtaatttacc acaatctcga atcggctgat gaatccaacg cttgagcaga
     3241 cggctcccca ttggggtcac acatttatct aacaccgccg ccagcgtgtt ttccgtgcca
     3301 cccgctaagt tttgggtcag ctctaaattg cgacgagtag ctgcatcgag caaaatagta
     3361 tcgctatgtt gtgccaaatg aattgcgtta atgtgcggta aagcggtgcg ttgcgtttct
     3421 tgggcataat gcaagacaca gccggcagca caaagtgcca ccaccgcttt ttccacccca
     3481 aatccggcaa gtgtttgcgt gccgaattgg cgatttagca gctgaatcgc cgttaccagc
     3541 tcaaattccc acaccggacg gcggcgtaac cctttgtaat tcgttaaaat tgaggcagcg
     3601 gaaaaatctt ccgcatacag aatttctgcc ggttgtacac gttgtaactc ggcggataga
     3661 gcctctttgc tagcaagttc actgattaaa aaccgcccgg aggtcatatc tagcgtagca
     3721 atcgcaaatg tgcctttttc ttcgtaaact gccgccacca agttatcttg gcgttcgggt
     3781 aacaatgcct catcgctaac tgttcccggc gtaacaatcc gtaccacttt gcgttctacc
     3841 ggcccttttg aggttgctgg gtcgccaatc tgttcacaaa ttgctaccga ttcccccaac
     3901 gccaccaatt tcgccaaata cccctccact gcgtgataag gcacacccgc catcggaatc
     3961 ggctcaccgg cagattgccc tcgcttggtg agcgaaatat ccaacaatgc tgccgctcgt
     4021 ttcgcatcat cataaaacag ctcataaaaa tcccccattc ggtaaaacaa tagtatgtcc
     4081 ggattttgag ctttgagttg caaatattgt tgcatcattg gcgtatgggt ggagaaatct
     4141 tgtgtcatca gtctatttat tgtgagaaat cattgctgat agtttaacag attcagccaa
     4201 gggataaaaa caagcggtca tttttcgcag aaaatttgca atggtcagcc gctgtttttt
     4261 tgttacaatg caccaaattt ttaaaacaga ggtcagaatg ttaagaaaaa tagtgctact
     4321 ttctacaggc ttattattgg cggcttgtag cagcaatgaa ccgcaacaac cggaagcatt
     4381 cccgggcgaa tttgccaatg ccgattatgt gctttcggaa gaaaatgctc aaaaatgggt
     4441 aattgccagc gaacaggcaa aacagtgtat ctaccccaat ttaacccgta ttcagcaaga
     4501 gcatttttcc aaagaagatt cttatatttt ctcacaatat gtatttttct atccgcttga
     4561 agagattatc ggggagcagt atgtaaaaat cattcaaaat gatgaaaaat caatgggtta
     4621 cgctcaatat ttattcaaaa aactgaaaaa taacgaagcg gttgaagcgt taccgaaaaa
     4681 acaatgtgcg accttacgca ccaatgcaaa aaatgatttg gcagtggtaa aagggcagta
     4741 tcaaagcggt atgatcgaag aaaccaatag ccaagaaggg aaatcaggcg ataaagttgc
     4801 caccaatgat aataaattct tcttcgatat tatcaaatgg ggcagtatgt tacttctcta
     4861 gtgagcctca atactcggtt gttttaacca caaccgagcc atttatacct accgattgaa
     4921 cttttatcta aagcctcagt cttaaaatac agtttttttc aattattttc cctcttttat
     4981 atttaaggat tttcaataaa agcattaaaa acattattag cattgggcgt ggcaatggct
     5041 gtttcagcta cttcatttgc acaaaccact caacctactg cggctgaaca aatgaacgca
     5101 gttaaagcct ctgttgccga aaaagcaact gtggctaaag aagcaacaaa agagaaagca
     5161 gcggagttaa aagccggttc tgcggaaaaa atggcgacag caaaagccaa aaccgaatca
     5221 tttaaagatt ccgctaaaaa caaaatggac gcagtaaaag ccaccacagc agaaaaaacg
     5281 gacgtgatta aagcgaaagc cgcatctgca agcgacacaa tgaaagtgaa agctcaggaa
     5341 gcaaaagccg ccaccgcaga gaaagctgca actgctcatg aaaccttaaa ttcagccaaa
     5401 accgcaaccg ctgaaaaagc ggccccaatg aaagcagctg caacagaaaa aatgtcagca
     5461 gtgaaaaaat cacaaaaagt gaatatcaac actgccaacg aagagcaatt acaatcgctt
     5521 accggcattg gtgaagcaaa agccaaagcg attgtagaat accgcaaaaa acacggtaaa
     5581 atcaaaaatg cagcagaact ggcgaacatt cccggcattg gcgatgcaac cattgagaaa
     5641 gttgctccat atttaacttt ctaatgttct gcaagcggtt attttgttgc aaaattttgc
     5701 agaaaaataa ccgcttgttc atttcacacc ttgtattctt aaatttcacc cccattaagt
     5761 gaatcgtatt tctttcaata cagtattcaa taaactcaaa aggaacagaa aatggcatta
     5821 gatttcaatt cagttggatt agattcagta gaagcaaaag gcggttacgg catcggttta
     5881 caaattggtc agcaactttt aggcagcgga atggacgtaa acgcagaagc cgttgcccgt
     5941 ggtatttatg atgtgttaaa caacaatgag ccggcaatcg acatcaatga agtgaccgct
     6001 gcattacaag aattaggtca gcgtgcggaa gcggctcaag cagaagcatt caaagcgatt
     6061 gatgccgaaa acaaagcgtt cttggaagag aataaaaaag caaacggtgt aatcgttacc
     6121 gacagcggtt tacaatatga aattttaacc gaaggcacag gcgaaaaacc gactgcgact
     6181 tcaaccgtgc gtgttcacta caccggttca ttaattgacg gcaccgtgtt tgacagctcg
     6241 gtaaaacgcg gtcagccggc agaattcccg gtaaacggag taattcgtgg ttggacagaa
     6301 gcattgcaat taatgccggt tggctcaaaa tggcgtttaa ccattccaca agaattagcc
     6361 tacggcgaac gtggtgcagg agcatcaatt ccaccatttg cgaccttagt gtttgaagtg
     6421 gaattgcttg atattctcta atcaaactca aataaaaaac ctgtgaaggc atttcacagg
     6481 tttttgctat ttaagataac tatattatgc agaaaaaatc actcatatct cgcttactta
     6541 aaaatatttt cctctacggc agcctgttta tcattattag cctggtggtt gattggtatc
     6601 gctcgccctc cgctccggca caatttgagc aaaccgtgca ttatgatatt caacaccagc
     6661 cgaaagtaat cgcccaatta agccacgaga agccgatgct actctatttt tggggaagtt
     6721 ggtgccacta ttgccaagtg gtttcgccga atatccaaca attagcgaat gacggcacgg
     6781 aagttttagg tgttgccctg aaatccggcg atgaaaatga cgtacaagcc tatctcaatg
     6841 aaaatggcta cactttcgct actttgaatg acccaagcgg tgatttctct cgaggttgga
     6901 acattcaagc caccccaacc atcttgatta tcaaagacgg taaaatcgcc caccacacca
     6961 ccggctacac tagctatttg agcttaaaat tcagactatg gctggcagac gtgttgtatt
     7021 aaacgattcc tttcatttgc aaaaaaatcc actaaatccg accgcttgtt tacaccaaaa
     7081 agacaagcgg tactaaattc attgtcatca ttgtggtgat cgataaaatc agcctcgatg
     7141 agccaaaaat aaagcctcgg tttttgccgt tgtcgaattt caccagtaaa tttgccattg
     7201 ctgtgagggc gtacacttcc accaccgtaa aaatcacggt gtaaatatag gcagcggtca
     7261 gagttgcgac ttttaccgca ataaaccaag gggcaataat cgccaccgct aataacggcg
     7321 aaatccaaat taattgctgt ttggtgaggt tgattttacg agaaaaagtc gattgcaaac
     7381 tgacggttaa aacaccgttg atgaataacg caatcggcga atgctccggt gcgtgcagga
     7441 cattgtcgaa taaatacgga aaaataataa aataggacga tgccacactc agtggcacaa
     7501 atagcattaa gtgagcgaac aaaaactctt tgttgatgat ttccttaatt tgtgcgaaac
     7561 gaaatttcac gccgccattc acgccttcca ccgaataaaa cggcttgacc ataaacgcaa
     7621 acaagccggc ttccaaaata aagcagatcc aaatcagcgt ttcaatcatc tcaaacctaa
     7681 taaacggaat aataatcagc ggggcgagca ttgaagacat actggtgact tttagatatt
     7741 tgccttgtaa acgggtttta gcagcatatt catcgccggc aatcgccagt aaacaggctc
     7801 tggcattagt gccgaataag caactcccca acccaaagca agtggttgcc aacaataaaa
     7861 tgaggtaatt atccgctgct aaaaacagca tataggcaac cacatctaat aaacagccca
     7921 ataacatcat ttttgccaag ccgtagcgat ccccccaaat gccggctaaa attgccaatg
     7981 cctgattaca aaacaacagc aatgaaagga aaaaagcgat ttgggcgtta tctagcttaa
     8041 ataaaagaaa aacacgcttt gcattgaaaa aaaggcggtg gtggaaataa aacggcgtag
     8101 gagtaatagt ttttctaaag acattcagaa tggttgaatt ggttaaataa agagcggtta
     8161 ttctaccttt taagtcaacc ccaatcaatc ggcttttgtt ttacctttgg cgtgggtttc
     8221 ggtatgataa gcgatatgta gtggcgggtc ctgtgcccgc ctaaatacca atgataactt
     8281 gcgggcgagc acaggactcg cccctacgat aaacaagaaa atgaaagaca ccattgttgc
     8341 tcaagcaaca ccgattggca gaggcggtgt ggggattctg cgagtttccg gtccgcttgc
     8401 cgaaaccgtt gctcaagccg tattaggcaa aacattgcca ccccgtatcg caaattattt
     8461 gccgtttaaa gacgaagatg gcactgtgtt ggatcaaggc atcgccttat tttttaaagc
     8521 tcccaactcc tttaccggcg aagatgtgct tgaacttcaa ggacacggtg ggcaggttat
     8581 tttagattta ctgctcaaac gcattttaca agttaagggg ctacgcattg cccgagcagg
     8641 tgaattttcc gaacaggcat ttttaaacga taagctcgac cttgcccaag ctgaagcgat
     8701 tgcggattta atcgacgcca ccagcgagca agccgctcgt tcagccctga aatcactaca
     8761 gggcgaattt tctaataaaa tcaatgcgtt agttgattca gtaatttatt tacgcactta
     8821 tgtggaagcg gcgattgact tccccgatga ggaaattgac tttctggcag acggtaaaat
     8881 cgaggcaaaa ttaaatgaga ttatcgctca attagacggt gttcgccgtg aagcgaaaca
     8941 aggctcgatt ctgcgtgaag gaatgaaagt agtgatcgcc ggtcgcccga atgcagggaa
     9001 atcaagcttg cttaacgcct tagccggacg agaggcggcg attgtaacca atattgctgg
     9061 cacaacccgt gatgtgttgc gtgaacatat tcacattgac ggaatgccgt tgcatattat
     9121 cgacaccgcc ggtctccgtg atgccagtga tgaggtggaa cgtatcggca ttcagcgtgc
     9181 ttgggaagaa atcgcccaag ccgaccacgt tttattaatg attgacagca ccgagcaaca
     9241 agccgatcag ttccgacaag agtgggcgga atttctagcc aaactaccgg caaatatgcc
     9301 tgtgaccgta attcgcaaca aagtcgattt atccggcgag caggaaggct taattcaggt
     9361 ggacgatttc acgatgattc gcctctctgc ccaaaccaaa gtcggcgttg atttattgcg
     9421 tgaacacttg aagaaatcaa tgggctacca aagttctacg gaaggcggat tcttggctcg
     9481 ccgccgtcat ctgcaagcat tggaaaccgc tgccgagcat ttagagcgag ggcatatcca
     9541 gcttactcaa ttcttagccg gcgaattgtt agcggaagag ttgcgtatgg tgcaaaatgc
     9601 cttaagtgaa attaccggcc agttcacctc tgatgactta ttaggcaaca ttttcagctc
     9661 attttgcatc ggtaaataaa tgacactttt taaccgcttt caaacccagt gtgcaacgca
     9721 tttgccgaac caaaccgcct ttttaatcgg cttaagcggt ggggtggatt cggtggtact
     9781 actccacctt tttgcccgca cctcatttca cgttagggca atttatgtcc accacgggct
     9841 aagcccaaat gcggacgact gggcagcctt ttgcgaacaa tattgcaagc ggttaaatat
     9901 tccctttatt ttacaaaagg tcagagtgga tagctcaaac ggcgttgaaa acggggcgag
     9961 agaagctcgt taccaagcca ttcaacaaca gcttaagccc aatgaagtgt tcgccaccgc
    10021 ccaccattta gatgaccaag ccgaaacttt tttgctcgcc ctcaagcgag gcagtggagt
    10081 caaaggatta tcggcgatgc aagcggtcac ttttttgcaa aattttaccg tttttcgacc
    10141 gctactcact tttactaagt cagatttgat gggttatgcc gttcaacatc agctaggttg
    10201 gattgaggac gaaagcaatg ccgataaccg ttacgaccgt aatttccttc gcaatagcat
    10261 cttgccacta ctcaatcaac gttggcagca cttcagccaa atggttgccc gttccgctca
    10321 gcattgtgca gaacagcaag ccttgataga agagctatta agcgatgaac tcaagtcaag
    10381 aacaggggaa aaacaacaac tcaacattaa cggctttggg caattttcac ttgccaagca
    10441 acagcaactt agccgccttt ggctggaaca aaacggagtg agaatgccaa gccaagccca
    10501 gctacaagcg gtcatttctg aactgatttt tgcaaaagcc gataaaaacc cacaggttaa
    10561 agtcggcgaa aatattatca gacgctatca acaagctatt tacgttaccg aagagatcgc
    10621 cgacattccg ccatttgagg tagtacttcc cacagaaacc aaagtggaat tactctatca
    10681 gctcggtact attattcgcc aacaacaaga gatcatttgc aaaaaaaacg ggaaaaatca
    10741 ccgcttgcaa ctgccccaag agctggctca atcaactatt tctattaaaa tcgggcaact
    10801 aggcaaagta aaatgctacg gcaaggctca acgggaagaa atgaaaaaga tttggcaaaa
    10861 tcacggcata cctgtttggg aacgcaaccg tacaccgctg attttttggc aagacgaatt
    10921 agttggccta ttacctatcc tctagggtga aattgctgat gaagcgattt caaacgggct
    10981 tttgccactt gagtgtaaat ctgggtggtc gataaatcac tatgccccag caacatctgt
    11041 accactcgca aatcagcccc atgattgacc aaatgggtcg caaaggcgtg gcgaagcacg
    11101 tgaggcgaga gtttatctgc atcaatacct gcaagcacgg catagtgctt aatccgatgc
    11161 caaaacgtct gccttgtcat ctgctgccct cgccggctcg gaaatacaac atcagactgc
    11221 tgattattca gcaaaatagg gcgaccgtac tggaaaaact cctgtatcca ataattcgcc
    11281 tcctcgccca atggcactaa ccgctcttta tcccctttac cgataattct caccccccct
    11341 tgtttgaggc tgatattatc catcgaaagc gacaccagct ccgttacccg cagaccggtg
    11401 gcatacagca gctccagcat tgctttatcc cgtaactcta tcggatctaa cgtattcggg
    11461 gcatctagca aatccattac ctgatcttca cttaaggatt tgggtaaaga agcaccccgt
    11521 ttaggggaag aaagggttaa agtcgggtca tcttggcgat aatgctcaag gcataaaaaa
    11581 cggaaaaatt tccttaaaca actcaacatt ctggcagagc ttgtcgcctt atagccttgc
    11641 tccaaacgct cgccgagaaa accttgtaag tcgatatgat cgagagacag aaatgcttta
    11701 ggttcagaaa aataatcgga aaaacgctct aagtcagaac gataagaggc aacggtattt
    11761 tcagacaaac cgtgttcttg ccatagtgta tcgagaaatt gttcaataat agggtcaagc
    11821 tcagccatac aagcgggtat attttcagga aattttgcaa attttaacag aattaaatct
    11881 ataaaaatac aaaagcgata gaaaagaaaa aaccgattag cttatgctaa tcggttta
//
LOCUS       DANLUT010000070        11802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLUT010000070 DANLUT010000000
VERSION     DANLUT010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            6..353
                     /locus_tag="PXB38_001434"
     CDS             6..353
                     /locus_tag="PXB38_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353753.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            350..1267
                     /locus_tag="PXB38_001435"
     CDS             350..1267
                     /locus_tag="PXB38_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL5353754.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1267..2058
                     /locus_tag="PXB38_001436"
     CDS             1267..2058
                     /locus_tag="PXB38_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL5353755.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2436..3353
                     /locus_tag="PXB38_001437"
                     /pseudo
     CDS             2436..3353
                     /locus_tag="PXB38_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3355..4023)
                     /locus_tag="PXB38_001438"
     CDS             complement(3355..4023)
                     /locus_tag="PXB38_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL5353756.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(4067..5434)
                     /locus_tag="PXB38_001439"
     CDS             complement(4067..5434)
                     /locus_tag="PXB38_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL5353757.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5553..5648)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5819..6871)
                     /locus_tag="PXB38_001440"
     CDS             complement(5819..6871)
                     /locus_tag="PXB38_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5353758.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(6918..7343)
                     /gene="ruvX"
                     /locus_tag="PXB38_001441"
     CDS             complement(6918..7343)
                     /gene="ruvX"
                     /locus_tag="PXB38_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL5353759.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(7343..7903)
                     /locus_tag="PXB38_001442"
     CDS             complement(7343..7903)
                     /locus_tag="PXB38_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL5353760.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(7903..8634)
                     /gene="rsmE"
                     /locus_tag="PXB38_001443"
     CDS             complement(7903..8634)
                     /gene="rsmE"
                     /locus_tag="PXB38_001443"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL5353761.1"
                     /translation="MRIPRIYHPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8694..8984)
                     /locus_tag="PXB38_001444"
     CDS             complement(8694..8984)
                     /locus_tag="PXB38_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5353762.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(8965..9138)
                     /locus_tag="PXB38_001445"
     CDS             complement(8965..9138)
                     /locus_tag="PXB38_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353763.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(9310..9897)
                     /locus_tag="PXB38_001446"
     CDS             complement(9310..9897)
                     /locus_tag="PXB38_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353764.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            9989..10300
                     /locus_tag="PXB38_001447"
     CDS             9989..10300
                     /locus_tag="PXB38_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5353765.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSPNCLGVG
                     Q"
     gene            10392..10481
                     /locus_tag="PXB38_001448"
     tRNA            10392..10481
                     /locus_tag="PXB38_001448"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10426..10428,aa:Ser,seq:gga)
     gene            complement(10657..11031)
                     /locus_tag="PXB38_001449"
     CDS             complement(10657..11031)
                     /locus_tag="PXB38_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL5353766.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(11056..11358)
                     /locus_tag="PXB38_001450"
     CDS             complement(11056..11358)
                     /locus_tag="PXB38_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL5353767.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11479..11799
                     /locus_tag="PXB38_001451"
     CDS             11479..11799
                     /locus_tag="PXB38_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL5353768.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
BASE COUNT         3486 a         2240 c         2294 g         3782 t
ORIGIN      
        1 attatatgtt cagagaagaa gctattgaat atcaatcgaa aaaatggaaa agcacagctg
       61 tactatttag cagagttcca gctttggttg tcttttccat ttctttcttt atctttactg
      121 cctttattct atttattgtg tttggtaatt atacccgccg tgaaacggtt gtgggtgaat
      181 tagtgatgca atctcatccg attttattat ctgccccaaa atccggctat atatccgaaa
      241 attatattca accacatcag caggtaaaaa aaagggcgat ccgctggtta aaattacgct
      301 ggatagaatt acgcatagcg aaaatattaa tgttaattct attctttcgt tgaaatcaca
      361 aattcaagca acagaacaag cgataactgc tttatataag aataaatcag aaactattaa
      421 tagccttgaa aagcagatca aaaacagtca aaaaatttat caagataagc agagttattt
      481 agtggaaatt gaaaaaagta tgaatgacta tgcggagttg gttaaacgct atgagaaatt
      541 attaaaagta gggcattcca gccacgatga agtgaatatt cagaaaagcc gttatttcca
      601 acaaaaatca ctgtttaatg agctaaagca agaattaatt caattaaaat ccacccaact
      661 tagcttggaa aatgaaattg aaacccgtaa aaccgaattt aataatcaga ttattcgcta
      721 tgaaatgcaa aaaagcgatt taaacattcg tttaatggaa tttgaatctg tttcagatat
      781 tattgttaat gcctctttag acggaaaaat tgaaagtacc agcgtaacag ttgggcaaat
      841 tattaaagaa aatgacccgc ttgcacaaat tctgccacag aataaaggaa attatcagct
      901 agtgatgtgg gtaccgaata gtgccatttc atttattaaa caaggcgatg aggtgaatat
      961 tcgctatgag gcttttccgt ttgaaaaatt cgggcagttt aagggcaaaa ttacgtcaat
     1021 ttcaacctta ccagcttctt tgcaagaact tagtttttat aaaaatctcc ctgtaaattt
     1081 agagcaaggt attccgcttt ataaaattct gattgagctt gccgatcaaa acgtaaaata
     1141 taatgatacc tccctttatt ttatgagtgg aatgaaagcc gaagccacgt tatttttaga
     1201 aaaacgtaaa ctgtatgagt ggatattttt ccctatgtat caattacgca aaaatatgga
     1261 gcaataatga caggaattaa gcagttaaaa tttgattttc ggagaagaat acctgttatt
     1321 ttgcaaactg aaacagctga atgtggctta gcctgtttag cgatgatgtt gggctattac
     1381 gataaaaaca ccaatttatt tgaattgcga agtcaatatg gtacttcctc tcgtggcgta
     1441 acgctgcata ctttaatttc tattgcaaat gactgtggtt taataactcg ccctctttct
     1501 ctagagttag atgaagtacc acaacttcgt ctgccttgta ttcttcattg ggattttaat
     1561 cattttgtag tattaactca cgcaagtgaa aaacagttta ttatccacga tcctgctttc
     1621 ggtaaacgta aattatcccg tgctgaattt tccaaccatt ttaccggagt cgctttagaa
     1681 gtttggtctg aagttaaatt tgagaaaagc aacaatgaaa ataccattag tttgtatgaa
     1741 accttaaagc atatttctgg cataaaaggt gcattagtga aaatttttgc cctttcaatg
     1801 ctcattgaac tcattgcctt attgatgcca attggaacac agttagtgat ggatcacgtt
     1861 atgcaagcga aagatcaatc attactttta attatctgta ttgggctatt tttatttacc
     1921 ctttttcgca caatggtcag tatgtttagg gcttgggttt ccttgaaaat gaattattta
     1981 attgattttc aatggacagc cagtttcttt tctcatctct taaaattacc gcttgatttc
     2041 tttgaaaacg ccaagtaggt gatattcatt cccgatttag ttcattaaaa accattcaga
     2101 aaactctaac ttcaagcatt attaccacga ttattgatac gattatgatc atcagtttaa
     2161 ttattatgat ggtgttatat ggcggttggc tcttttgggt agtattagct ttttccttta
     2221 tctattttat tcttcgaatg gttacttatt tagtttatcg tcaactgaat gaagagcaga
     2281 ttattaaagg agcaaaagcc cattcgcatt ttatggaaac tttatatggt attacaacgt
     2341 taaaatcatt aggattggaa aataaacgac aagaacagtg gatgtcgctc aatgcggatg
     2401 cttttaacac atcaattaag gtaactaaat ttgatatgct gttttccggt attcatacct
     2461 ttatttctac catcgaacag attttaattc tttggattgg ggcgacaatg gtgattgaaa
     2521 atgtgatgac attaggaatg tttgtcgctt ttaatgccta tcgaggctct ttctcttcac
     2581 gaatggggaa tttaattgat attattttta gcctaaaaat tctttcatta catagagagc
     2641 ggattgcaga cattgcttta aatgaagtcg aagatgaaag taaatatcaa gaactcagat
     2701 ttgaacataa ccaaacagat atagaagtta aagacctttg tttcaaatac gatccttttt
     2761 ctaaaaatgt gcttgaaaat gtcaatttag tgatcagaag tggggaaagt gttgctatta
     2821 ccgcaccatc aggttatggc aaaacaacgt tattaaaatt aattgcaggt ttattaaaac
     2881 caacctcagg ttctgtgtat tttaacggca ttgatattta tcagttagga ttaagtcaat
     2941 atcggagcca aattgcttgc gtattacagg aagataaatt cttttctggt tccattttag
     3001 agaatattgt tagttttgaa agtaattatg atcgagaatg ggctatcgaa tgtagcaaac
     3061 ttgcgaatat tcacaatgat attatggcaa tgccgatgaa ttatgaaacc ttattaggag
     3121 aattaggaaa taatttgtct ggcggacaaa gataacgatt gtttattgct cgagctttat
     3181 ataaaaagcc taaaattctt ttgatggatg aggcgactag ccatttagat gaagaaaatg
     3241 agaagcttgt caatcaagct atttcacgaa tgaagataac aaggattatt attgctcata
     3301 gacaatcgac tattcagtcg gcggatagaa ttattgccct gaatgacagg taaattaatt
     3361 cctatttttc tgttcttgcc gataaagttt attgcacgga atgctgtcgt tgttgccgtc
     3421 tagctctttc cagccgcatt gttgaaagta gcgttttgcc tgtgcgtaat tgccgatttg
     3481 gttgcagctt aatttaattt ggcaatcaat cgttggtggc tggtttgcaa tattttccgg
     3541 ttttttgacc gcttgtggta aggttgaggt gtgtgttttt cgccattggc tcgggttaat
     3601 cgggaatttg tcctgccata agccgatttt agcttgctgt gcttgatctt gtgcttcgat
     3661 atattcccgc tttgtggtgt aagcccacgc cataccgttt tccactaagg ctaagttgat
     3721 gtttttatcg tttaagtaga gggtggcaag taatcgttgg taacgatcat agcctgaaac
     3781 tatggcagta atgttttgtt gaaacacgaa ttgagccaga gcttgtttgg ctttgttgcc
     3841 gtaaggctgc gcttgttcgg gggcatcaat atgttgtagc cttattttta gtggtgtttt
     3901 attgaccaaa caagtgaggg tgtcgccatc gctaatgcca acgactttgc attgtagttg
     3961 gcgttcggcg gcatataccg atgagaaaaa taagctaaaa atcagggcgt aaagatattt
     4021 cattattaaa aaagagaggg ctaataagcc ctcattctat cattttttat tcggctttac
     4081 ctgttttaag gcgagcgaag aaatcttttg tttcactaat aatcactttg cgtaacgcaa
     4141 tcaatgcgat taaattcggg aatgccatta agccgttcac gatgtctgcc agcgtccaaa
     4201 ttgtatcgag ttgtaaaaat ggagcagagg cgatgagtgc aataaacagc aagcggtata
     4261 atttaatgta ttgggtgcga cctcgagtga gatagacaaa acagcgttca ccgtagtagc
     4321 accagcctaa aatggtggta aaggcaaaga agactaaacc aactgtcaca attatcgcac
     4381 cgaatgagct gtttaaacct tgagtaaaag cggttgtggt gagttctgcg ccttttacat
     4441 cgcctgccca agcccctgaa atcacaatta ctaagccggt cattgtgcag acgataatag
     4501 tgtctaagaa cgtgccggtc attgaaatta ggccttgacg taccggctct ttggtttggg
     4561 cggcagcggc ggcgatgggg gcagagccta atcctgattc attcgagaaa ataccacgtg
     4621 caacccctaa ttgaatcgct tgcatgacgg tgaatccgac tgctccgcct aatgccgctt
     4681 gtgggttgaa agctgcgtgt acaatagtaa taattgcttg tgggactttt tccatattca
     4741 gtagaatgac ggataaagcg gcgatgacat acccaatagc cataaacggt acaacaatgg
     4801 ttgcaatttt agaaatccgc tgcacgccac ctaaaataat agcggtaacg ataagggtta
     4861 aaatgatcgc actgaagata atcggcacat caaaggtgct ttctaaggcg tgggtaatgc
     4921 cattcacttg ggggaacgtg ccaataccaa gcaaagcgac caatacgcca aaaaacgcaa
     4981 aggctttagc aagccaacgc catttttttc ccattcccag ttcgatatag tacatcggac
     5041 caccagccac aaatccggct ctatctttag ttcgatattt aattgccaat aagccttcgg
     5101 catatttcgt agccataccg aataaggcaa tcagccacat ccaaaataat gctccaggcc
     5161 cgcccgaatg aatagcggtt gccacgccga caatattccc cgtgccgata gtagctgcta
     5221 gggcagtgga aagggctgca aaagcggaaa tatcgcccga ttgccctttg cctttttccg
     5281 gtttgaacat atagcgaaag gcttgcccta gttggcttaa ttgaatacct ttgagtgaaa
     5341 aggttaaata taaccctacg cctgaaatta aaatcaggag tggcgggccc caaacaaaac
     5401 tgttgatttg attaagaata gtgtcgatag acatttgatg ttcctcgtaa aaactgctta
     5461 caaggaaaga aaaggaatgc aagagacaag cggtcaaaaa acggaaattt tttgcaaaga
     5521 attagcaaaa aaacaccgct tgtatcgtat aacttttctc ccctgtcctt ttgcctgagc
     5581 gtttcacaca ttgctgtatt ttcgccttcg gcggcggatt ttaatccgct ctctccaagg
     5641 gttcgtccag taacagtccc cgcagtgttc actgcacctg aaagagttta cctcgtcggt
     5701 gaaatgttaa ttcatttctc tccagctacc ttcatccgaa caatctaatt tattttataa
     5761 tgtaaaataa aaaagatttg ccaaattcta gcaactcttt tgcttccgtc aagtgaattt
     5821 aacgatattt ttgttctttc ggtacttctt ctaaatcgct aaataatacg gcatattttt
     5881 gggtggcttt attggattct aatgccactt tacacgccat cgtaagtgga acagaaagta
     5941 acattcctac ggtgccaagt aaccaccccc aaaatagaag tgagaggaac actacaaggg
     6001 tagaaagccc gagtttcttg cccattaatt taggttcaag cgcattaccc acaaccatat
     6061 taatcacgac aatgccgatt aaagtgccta atcctataga aaagccattg agtaccaagg
     6121 cttgaatcac aattggaatt cccgccaaaa tagagccgat attcgggacg tagttaagca
     6181 ggaaggttag aattgcccat aaaatcgcat attctacgcc tagaatttct agtaagatcc
     6241 aaactaaccc tccggtgagt aggctcacaa aggttttaac tccaaggtaa ccaatcaccc
     6301 cttcaagtac ttggttgata tactcttttt cgttgcttaa atcatcatct gggctaagtg
     6361 cgagggctaa tttatatttg gcaaccggca tttccaatag cataaaaatg acgactaaga
     6421 aaatcacaaa aatattcgat aatgcaccgg atagccccat tagcagtttg ctgaccaaat
     6481 tcattattga gcttgggtca aatttgctca taatctcttc ttgtgagagg gtaagtggaa
     6541 tatgccatct atgggcgagt tctagaatca cctggattct agatgaaagc tgaattttgt
     6601 attgcggaat agcattagta aattcttgca aggtgttatt aataatgcct gctaagaaac
     6661 tgaatcctaa gataaaaaca ataagtaaaa tggtaatggc taaccataat ggcactttac
     6721 gcttagtcat aaatttgatc attggtgaac aaataatggc aataaatagc gaaagtaaaa
     6781 atggcacaac aatttcattg gataatttaa tccctgccag aataatgata atggaggcta
     6841 tcgccacgag agttttggtg gaatgtgtca taatttttcc ttttacaagc ggttaaaaat
     6901 cagcaatttt ttacaaatta gtgattctca aaccaacttt ctaaaattaa acaagcggaa
     6961 atggaatcca ctttatcctt ttttaatgct ttgtaaccac cacgagaaaa aatttccgct
     7021 tttgcctcaa cagtagtgag gcgttcatct tgtagctcaa ccggcagatt aaagcgtccg
     7081 tttaagcgat tggcaaattt tctggcacgc tgagttaaag gctgctctgt gccgtccata
     7141 ttcaagggta gcccaacaac cagcatatct ggtttccaat cttgcaagag ttttccgatc
     7201 tcttcccagt ttggaatacc gtcttgggct ttaaatgtag ttaaaccttg agctgtgccg
     7261 gtaatacttt gtccaactgc acagccgatg ctatttgtgc caaaatcaaa ggcaatcacg
     7321 gtttttgttg tggtttctgt cattaagctc tcccagctct tgacggtatg cttgaaagcc
     7381 ccatcatttc ataggcttct gcccaacgct ctaaataacc ggtttcaaac agcgtttttt
     7441 cattcgcatc agacacaatc caataatttt gagcaatttc ttgctcaagc tggctgccac
     7501 gccaagtgga acaacctaaa cacacaataa atttttcagg tgaagccagt gtgccaaagg
     7561 agtctaacac atcaccggag gtagtgagcg taattttatc ggtgatcgga taagtgtgaa
     7621 taaaatcatt ggcggttttg gtgtgaataa taaagccacg atcttgattt accggcccac
     7681 cgcttaacac catttggtct tttttgtaat cacgctggtt cgccatttgg aaatccattc
     7741 gggtaatcag ctctagaacc gacagatcgg taggagtgtt aattactact cccattgcac
     7801 cttgcggatt atgttcgcaa atatagacca ccgtacgctc gaaatagtca tcgtccattt
     7861 ccggcgtggc aattaaaaat ttaccttgta aattctctaa cattaaatat ctccaaaaca
     7921 aacttgtaac gcagtaattg ccgcaagtga ggcggtttct gtgcgtaaca ctcgtttacc
     7981 cagtaatact tcagtaaaac cttcgctctc ggtcatggcg atttcttcgg cagataatcc
     8041 gccctcagag ccaatcagta aacgaacacc agctttcggc acattcggca gttcacgaat
     8101 ggtatatttg gctcttgggt gcaaattcag tttcaacata tcgtcttgtt ctttgcacca
     8161 gtcggtgagt ttcataatcg ggcgaatttc agggatttca tttcgtccgc attgttcaca
     8221 ggcggcaatc gcaattttct gccattgctg taatttttta tcttgccgtt catcattgag
     8281 tttcacgcca caacgttccg accaaagtgg ggtaatagtt tttaccccca gctccaccga
     8341 tttttgaatg gtaaattcca ttctatcgcc tcgggaaatc acttgcccta aatggatcgg
     8401 caggttggat tctcggtcat ctaattcact tgaatcaatt tttgcaataa tttgcttttt
     8461 ttcgaccgct tgtaacgtag cgtggaaaac gtggtttgaa ccatcaaata aaatgatttg
     8521 ctctccttgt ttcattcgta gcactcgccc aacgtggtta gcggcatctt cacttaacac
     8581 gcaactttga agaccagcta acggctgtgg gtggtaaatt cttgggattc tcataattat
     8641 ctagttataa attaaaggca gacgattgtc tgccataggt aagttaaaac gggttaagga
     8701 taaagtcttg aacaatgcac aatagtaata atcgaaattt cattctcttt aacttcacac
     8761 actattctat agccgttatg atatagttct ctcgtattaa taattgcacc ttttacaccc
     8821 attgtaggaa aaatggctaa attattaata ctattttcca attcttctag tatcctaatt
     8881 ccactacttg cataaccggt aaattcacta actgagatgg caatattctc taaatctatt
     8941 aaggcctctt cagtataata aatattatgc aacttttttg gcattttcag cacctctaaa
     9001 agcggcagca ataactcttt ttctgacctc ttcgggtgaa taaatccgac cgtttttaat
     9061 atcttccttt ccttgcttta cttttttagc aagataatca agatattctt ggctaacatt
     9121 atgataagga ttattcatat ttttcctccc tgcgatgagt ctctattgtg ggggctactg
     9181 atcgtttaat caagttaatt tatcttattt ttcgagccac atcacaaaac gagaaaacaa
     9241 caagcggtca tttttccacg ttttttgcaa aaaatcgaag aaagatgacc gcttgccaga
     9301 aaaaattaat tatttgaact ggtgaattgc attggcgatt tcattatcgt tgtaaatagc
     9361 tttcaccaca tcagaatagg cttggtctaa cactttcttg atttcatcat tgcttgcacc
     9421 aaatgcacct tcgtaaccac gggtagcgtt gaagtttttg ctaaagtttc ctttagaacc
     9481 ttgcactgcc acttttacac tcacttgtgc atcggctttg tagcgtaagt ttccttgttc
     9541 tactgtggca aagaatttac gaatattcac taccacattg gcattcgctg caccttgtac
     9601 aatttggaaa ccttttgcat tcaggtcttg ttggacggct tgttggaaca ttgcagcaac
     9661 ttcaggcact gcggttaaac gaatgacctc tccgttttta gtgtagcttg cgatttcacg
     9721 cgaggtgcgt aaatcttgtg tcattacatt caccgcagcc gtttgattgt ttgtgttaaa
     9781 tacagcagtt ggcgttgggg tagagaatgt taatgtgttg gattggcttt ggcagccggc
     9841 tagtaatgcg gcaacaaaag tagtggctaa cactaacgtt tttttagagc gtttcatagt
     9901 aaatccttct atattgaata aatttcgaga aaatttctgc ttagtatagt attatttcgt
     9961 tttgattttc aatgaacgag agcaaaaaat gtcggtagaa cagacaatta ttcaaaaaat
    10021 taagacagaa tttcagccga ttttctttaa tgtcgaaaac gaaagctata tgcacagctc
    10081 aggtagagga gcagaatcgc attttaaatt aactttggtg tcagataaat ttgaagggca
    10141 gagaacagtt gcacgtcatc gtgctgtcta tgcttgctta gctgaggaat tagctaatgg
    10201 cgttcacgca cttgctttgc acctatatac ccaaggtgaa tgggaagcga ctggcggact
    10261 tgtacctaaa tcgccaaatt gcttaggtgt tgggcaataa gtggataaaa atgatttatt
    10321 ttattttgtg aagaaaatac ttgaaagaac cgtgtaaaat tgctatattt acgccatctt
    10381 tttgttgatt cggtgagatg tccgagtggt tgaaggagca cgcctggaaa gcgtgtatat
    10441 gggaaactgt atcgggggtt cgaatccccc tctcaccgcc attcatactg aaagattcct
    10501 tactgttttc atagatattt ccttggttaa gttaaagtag ataatacttt ttcattttta
    10561 ggttatccct gagcaaacat tgcttgggga tttttttatg cgatcggcga tagattacaa
    10621 agaaaaagga ttcctaagaa tcctttttat ctgcttttaa cgtactttac ctagtttata
    10681 gttattgctg ttttttaccg tgttgccatt tgggtcgcaa agttcaacgt gttgttcaga
    10741 cacttggaag gcaagattgc ctgatgcttt ttccagacga atcacatttg gcttattggg
    10801 ttcccaactg tatgtgcctt tgtctcggta agtgtattct tttttatctt taaaatatac
    10861 cgtatcatat tggtaggttt tatctgcatt taaggttagc tgggcttgga ttttctcaca
    10921 gtcagcacac ggtaattcac ctgcataagt accgctaacg cttttttgtg gtagcaatga
    10981 gcaagcccct agcattgcgg tggtaaaacc aatgagtgcg atttttttca tactattttc
    11041 ctcttcaaaa ttaaattatg taacactcgg atttactcta aattcaagtt gggttatttc
    11101 aggtaaatcg gtttgtatct gttttagtaa catattttgt tgcaagatta aaccttgccg
    11161 tacggttgca ttcttaacgc tcacaataag ctgattatca actaaattca ctactcggta
    11221 aagcccacga taagattctg gccatctttt ctgaattttt tggtttaaat cgttaatgaa
    11281 gtttgctttt tcgacaatac ggcttaagct tgagttctgt aaaatgtcat taatcttttt
    11341 aggtgctgaa tttttcatct gtttctttac atttcgtctt attttaggct tgattttacg
    11401 atacttgacc caataattta ctcattcggc tttactttag cgtataatta gcccaatttt
    11461 ttcgtttatc ttaatttaat gagcttattt ttaaaacact ttcatcgaac gcctttttgg
    11521 tcgcaactct ttttgggaat ggttgcgata cttgctttac ctgaaattca ggttgcgtac
    11581 gccaatgaaa gtgaacagga aaccgttctt aatcaatctt ttcttcaata tgctcaatcc
    11641 gctaatgata ttgagcaaca atcgcttttt attgcagagt taatccataa aattgtggaa
    11701 attaaaccac aagcggtgca tttttgcgaa ttttttgcaa actcctaccg cttggataga
    11761 caaaatgctt accccattcg agccgggcca caaacctaaa ta
//
LOCUS       DANLUT010000071        11759 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLUT010000071 DANLUT010000000
VERSION     DANLUT010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11759
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            98..355
                     /locus_tag="PXB38_001452"
     CDS             98..355
                     /locus_tag="PXB38_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5353769.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(402..1022)
                     /locus_tag="PXB38_001453"
     CDS             complement(402..1022)
                     /locus_tag="PXB38_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL5353770.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(1024..1677)
                     /locus_tag="PXB38_001454"
     CDS             complement(1024..1677)
                     /locus_tag="PXB38_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL5353771.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            1726..2385
                     /locus_tag="PXB38_001455"
     CDS             1726..2385
                     /locus_tag="PXB38_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL5353772.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(2422..3468)
                     /locus_tag="PXB38_001456"
     CDS             complement(2422..3468)
                     /locus_tag="PXB38_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL5353773.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(3468..4421)
                     /gene="dusC"
                     /locus_tag="PXB38_001457"
     CDS             complement(3468..4421)
                     /gene="dusC"
                     /locus_tag="PXB38_001457"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL5353774.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(4499..5125)
                     /locus_tag="PXB38_001458"
     CDS             complement(4499..5125)
                     /locus_tag="PXB38_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL5353775.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(5125..5982)
                     /gene="djlA"
                     /locus_tag="PXB38_001459"
     CDS             complement(5125..5982)
                     /gene="djlA"
                     /locus_tag="PXB38_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL5353776.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(6030..6740)
                     /locus_tag="PXB38_001460"
     CDS             complement(6030..6740)
                     /locus_tag="PXB38_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5353777.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(6976..7449)
                     /locus_tag="PXB38_001461"
     CDS             complement(6976..7449)
                     /locus_tag="PXB38_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5353778.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAGEFG
                     GLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADERGTPE
                     YNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLEY"
     gene            complement(7476..8762)
                     /gene="tolB"
                     /locus_tag="PXB38_001462"
     CDS             complement(7476..8762)
                     /gene="tolB"
                     /locus_tag="PXB38_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL5353779.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(8778..10001)
                     /gene="tolA"
                     /locus_tag="PXB38_001463"
     CDS             complement(8778..10001)
                     /gene="tolA"
                     /locus_tag="PXB38_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL5353780.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQAQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(10015..10452)
                     /gene="tolR"
                     /locus_tag="PXB38_001464"
     CDS             complement(10015..10452)
                     /gene="tolR"
                     /locus_tag="PXB38_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL5353781.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(10594..11274)
                     /gene="tolQ"
                     /locus_tag="PXB38_001465"
     CDS             complement(10594..11274)
                     /gene="tolQ"
                     /locus_tag="PXB38_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL5353782.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(11296..11697)
                     /gene="ybgC"
                     /locus_tag="PXB38_001466"
     CDS             complement(11296..11697)
                     /gene="ybgC"
                     /locus_tag="PXB38_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL5353783.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
BASE COUNT         3407 a         2643 c         2143 g         3566 t
ORIGIN      
        1 acttattctc cctataaaat gtggtaatgt aactacaaat taattatata atgaacctaa
       61 aaaaggttca acattatttg tacctaatat aggtgcaatg aaaaatctta gattatcaat
      121 acattccagc gagcatattt ggttaagaga actattctta aaacgccgtt tggaactagg
      181 gctaacacaa cgcacattag gagaaaaaat gggcgttctt tactcattta tcggaaaagt
      241 agaaacagga gatcgcagat tagatatttt tgaatttatc gcttattgca aagggttaga
      301 tttagatcct ttatctgtat tgcaagaaat tgaacaacaa tttcctcata aataaaggca
      361 ttgagttata actcaatgcc tttattttct atgtcaaatc tctacatgct cggcttagtc
      421 tctgccagaa tggcgtattt attattcatt tcctctgccc aagcggttaa atttgggtaa
      481 ttttttgcaa gatcgtagcc tatcttatct aagcggaatg cccaccagtc aattaatgct
      541 actgcggtta atgtgcctaa attcagctct gtgccaaact cttgcaatgc ctcttctaat
      601 tgtctgaacg aacggatatt gcgttccatt aattgctcgt ggcggctgac ccaccattca
      661 ttctcggggc gagccatacg ttcttgtaat aaagttggca tcgtattttc cataatgccg
      721 tccgccaaat tatgtaatgc caacactgcc cagcgaggtt taccctcttt aggtaacagt
      781 ggagtgttat tgcctttttg gtcaagatat tcgctaatta acaaactacc gaaaagccaa
      841 cgtccgcagt tgcgttgtag ggcaggaata cgtcctaacg ggttatcttg attatgtggc
      901 gaatttggat ccattgcttt tgtcacccgc aacatttcga ctttatcgtc taattggtgg
      961 tgtttaatca ccgcaagggc tttgcgggcg aaagggctgg tggttgagta ccaaagtttc
     1021 atactattct ccgtgtttga tgtgattgga tttgcaaatt ttttgccaaa aatgaccgct
     1081 tgtcggcaag gcttgcactg agattttctc attttcgtat tcaaaatcaa gctgataagc
     1141 gtgcaaataa acacggtcgg cttggctacc tgaatagagt ttatcaccta aaatcgggct
     1201 gcccaaactt ttcattgcca ctcttaattg gtgagttttg cctgttttgg gttgcaaaat
     1261 aaaatgcctg agcgagtctt caacagaatg agaaataaat tgcgttactg ccgggttttc
     1321 cttactgtgg cataatttcc acgctccatt tctgcttttt tgcatatcgc caacaattct
     1381 accctgcttt ttcttcggct ttttatcgct taatgcccaa taggttttgt agattttatg
     1441 ctgttcaaat aaatggtaaa accttgctgc cgcctcttta ttcaacgcta aaatcagtaa
     1501 acctgaggtg attttatcca gacggtgaac cagccaaacc tgctttacat tcagttggcg
     1561 agccactaat tccgttaagc cgatttcagc ctcatcttta tgcacactca agccttccgg
     1621 cttattgata ataataaaat cacgatgttg ataacaaata ggcaatgttg gggtcatttt
     1681 gctataatcc ttccaatttt tgactatttt agcaaggaaa ttacaatggc tgttaccatt
     1741 tatttagtac gacacggcag aaccgtgtgg aatttggaag gcagattaca aggctcgggc
     1801 gattccgctt tagtagaaga agggattatc ggagcgaaga aaaccggcat tgcgttaaaa
     1861 catattccgt ttaccgccgc ctattccagt atgcagaaac gggctcaaga taccgcaaac
     1921 tacattttag cagaaaatga acgcagtaat attccgcatt ttcatcataa aggcttgaat
     1981 gaatttgatt ttggcagctg ggaaggaatg aaatctgtcg atttgcaaga aaatgatgaa
     2041 tattgggtga tgaaacgtac accggcagaa tatctggcaa aagcaaacgg tggcgagcga
     2101 tttgagcaac tttatcaacg ggtgactcag gcgttcaatc aaatcgccga gctacaccaa
     2161 aatgacggca aagtgctgat tgtttcacat ggtatgacct taaccttact cacggctgtg
     2221 ttaaaaggca ttgcgtggca agatttccgc aatgaagaaa aacatagctt tgtgttcaat
     2281 actgccatta cgaaagtaga agtagagaat ggcaaagtaa cggtgctgga atttaataat
     2341 accgaccatt tggataatgt gccaacaagc caatacaaac gataatatta agggcggaac
     2401 attgtccgcc catagcattt tctaatcaga gaacactttt tctttcgttt ctgttttagc
     2461 aaataccgta tttttgaccg aagtaagcaa ctcctgacga atagctgaaa ttcttggctt
     2521 ctcattcgct tgaaaagcaa caggacgaca aaattccatt gctttaatgc caaggcgagc
     2581 agtgagtaaa cccacaccaa taccttgtgc ggcacggagc gataatttcg ccgtaaggtt
     2641 ttgcgagaag aaatccattc caacatcagt agcgatttcg gttgcaccgg cgaacaccat
     2701 atttttcagc accattttga acagttttaa gcggctgata taacccaatt ccattccata
     2761 ggctttggta attttattca ctaaagcgat atttcttgcc gccattaaca acacatcaac
     2821 tattgccagc gggctaaccg ccacaatcac cgcattttct gccgcattgc gggaaatcat
     2881 ctgcttaacc tgtttatcta tcggctttag cacattttcg ctaaacagat atagtacctc
     2941 tttggcatta taagcctcgt tcagttcgct tttccaaagt tgctcggctt gagcaatgct
     3001 cggcaagtga ttaagctgat ttgcaatatt ttcgcaaaat ttgaccgctt gttcgccatc
     3061 attggaaggc agctgttcca gcaataattg gttactcatt tgttgatttt tctgatgatt
     3121 tcgcaaatac accaactttc gccattcgga aataatcgcc ccaacgccca acaagctgac
     3181 aataaaaaag actatcgaga acgcaaaata gatccactct ctttgctgga acgtatcaat
     3241 caaccactga atactttgag caattaccgc cacgccaaac aaggcaagtg tggcaagtag
     3301 tactcgaatc caaaagcggg aaggcttaag gctttcttca ataatcagct ccgcctcaac
     3361 tgctttttcc tcttcttcaa taatcgcatt ttcgagatca aactcttgtt taggttcaaa
     3421 atgctcggtt gtttttagct cttcttcatt aaaaatttgc ttactcatta ttcctccact
     3481 gccttttcaa tatgtgcttt tagaccatca tagccgtgtt cggttttcaa gatatcaaat
     3541 aattctaccg cttgaggata ttctttatcc aaataacgta gccattgttt gatgcgagca
     3601 acgtggtaaa aaccggtatc aaactgattt tccatctgaa cgtacttaaa caatagctgt
     3661 agcacttcat tccacgccat tttcggaaca ttatatttca ccactttgct taaattcggt
     3721 gtgtttaacg ccccacgccc catcattaat gccttgcaag cggttatttt ttggcaattt
     3781 ttcgccgatt caaaatccca aatttcgccg ttggcgataa caggaataga cagccgttgt
     3841 tgaatttcgc caatcgcctg ccaattaatt ctttctgctc gataaccatc aactttggtt
     3901 cgcccgtgaa cggtaatttc attcgctccg ccctgttcta ccgcatcggc aatttcaaaa
     3961 cattggctaa cggaatccca acctaatcgc acttttacgg aaacgatttt atcgcttggc
     4021 acagcttcac gcatcgcttt ggttgcacga taaatcagtt ccggatcttt taataacgaa
     4081 gccccaccat tgctgccatt taccgtttta gaggggcagc cacagttgag atctaccccg
     4141 tgtgaaccaa gctcaatggc aagagctgca ttttctgcca gccactgtgg gtgttgccct
     4201 aaaagctgta cccgcactgg tgtgccggaa tcggttaatc cgccttgata tagctcaggg
     4261 gctaggcgat aaaaggtttt cttcggtaaa cgttgatcga ccactcgcac aaattcggaa
     4321 atacagagat cgtagtcatt cactgaagtt aaaaggttgc ggacaaaagg gtctaaaacc
     4381 ccttgcatcg gggcaagaat aacgttagga attggattca ttggtaaaat aaaaaataca
     4441 agcggttatt ttttctcaac attttgcaaa aaattggcaa gaaacaaccg cttgaaggtt
     4501 aaaaatgtct atcgtgaatg cgcaaatcgg ggcgagcgat caggtaaatc atcagtgcgg
     4561 ttaatgcccc aagagtatcc gcaagcatat ctttttgagc gtcccaaata tccccttgcg
     4621 agcctagaaa ttccacgccg gcattgccac cttcaatcac ggcatattgc cattcaataa
     4681 tttcgtaagc tgccgccacc gacataatga aaaacagcga gaagaaaaat gctacgccca
     4741 ttccgcactt gcgtttacgc agtaaccatt ctgccatcgg gaagctgtaa aaaccgataa
     4801 tgtaatgtgc tactcgatca aaatggttac gatcttcacc taaaatcggg gttagaaatt
     4861 gatttgccca ctcaaacggc acattggcaa aggtatattt tgccccgatc aagtgcataa
     4921 tcagccaaag cgacatcaaa aaataagcta acccactaaa ctgaaattta gggtaagtga
     4981 taattaaaag ggcaaaaacg ataaaaatcg gtatcacttc cgcataccaa actgcgcggt
     5041 ctgtcggatt taaccctgac caaaccgcaa tcacggtaat aacaatcgct aaaaatagag
     5101 ggatgatatg cgagcgtgaa tccattattt ccactctttc actttacaaa ttaaatcgta
     5161 cgccgcttga atttgttgag ctttctcttt tgccaactcc atcatctcat caggcaaacc
     5221 tttagcggct aatttatccg ggtgatgttc gttcattaac ttacgataag cccgtttcac
     5281 tgtattttga tcgtcttgtg cggttacgcc taatacggta taggctgcct caatgcttgg
     5341 ttgtgcaggc tgctgataac tgccctgata gccaccttga gattgctgat gataactccc
     5401 attttgctga taatagccac cattgcggaa ttgttgagct gccataatca ttgcgatcat
     5461 ctgctcaaat tggaagcgag acattcccat tgtttcggca atcgtaaaca gaatttgttg
     5521 ctcgttcaca tcaagttgcc catcttgcaa ggctgcctgc atttgcactt cgacaaagaa
     5581 acgtaataag tcagttcttg ccccacaggc ttctctgaac tcttgaatga cttggcgtaa
     5641 cgggaagtca ggctctttac ctaaggtaaa ggcattttgc gctaattgct gggctgcact
     5701 atctaatttt aagcgagcca ttaacgctcg ggctaattca atatccgctt cagtaacacg
     5761 cccttttgct ttcgcaatat gccccaacac cgcaaaagtg gtttgggtga aaagcgattg
     5821 gcgagttaaa tttttaccga aaagacttga acgaactgaa cctaattcat agagtttttt
     5881 atcggctaaa tgcccgataa aagcgccaag tatcccacca aataaaccgt gaaaaagctg
     5941 atagcccaag aaaaaaccga ctatttttcc gataaattgc atttttttat ccttttatag
     6001 aaatgaataa acgttattct aacaaaattt tactttgatt gctttttagt taatacaaac
     6061 ataagccagc ttgagacaaa aataattgca taacctagcc aactcaacat atccgggtat
     6121 tgttcaaaga acaacaaccc taaaattgca ctaaatagca cagaggcata actataaatt
     6181 gagatgtctt tcgccgccgc atatttatag gcggtagtta cacaaaactg cccgaccgct
     6241 gaagttaccc ctgctaacac taagtagatt gtctgtaaat tggttagcac tacataatca
     6301 atggcgacaa aaggcaataa tatcaaggtc gaaaaggcag aaaaaaagaa aacaatggta
     6361 ttaggtgatt ctactttttt ggtttttgcc aataacctta agcataaata ggcaatggct
     6421 gcaaacacag agccaatcac gccaaccaga taaggcataa agcgaatatc aactgccggt
     6481 ttgataataa aaagtgcccc gataaaggca ataaggcata aaatccattg caggagagat
     6541 gctctctctt ttaaaaaaat cgcagaaaga ataattaaaa tgaacgacgt gagtttgcca
     6601 atcatatcga catcacttag cacaaggtga tcgatgatat atacaccaca taaaatcccc
     6661 aataacccgg tgatggaacg gcttaataat aacaaacgat tttctgcata accaaagaat
     6721 aattggcgat ttttccacac aatataaccg cttatcaatg ctgtgcgttg cgaaaaatcg
     6781 ctttttgtgc aatcggtaca tcccccgaaa gacgaagaaa agcagccata atcgcaaagc
     6841 ttagtgccga caaaagcaca caaaaaatgg ctttaaataa cggcgagagc gaattccaaa
     6901 aattcatagc ataaaggctt ttaataaaaa taaagccctg attattcagg gcttcaattt
     6961 agaatcaact aagaattagt attctaatac tgcacgacgg tttttcgcgt agtcagcttc
     7021 tgagtgacct aatactgctg gtttctcttc accgtaagaa acagttgaag tgttgttagc
     7081 acctttagct gctaagtaac ctttaactgc atctgcgcga cgttgaccta atgcgatgtt
     7141 gtactctgga gtaccacgct catcagcgtg accagcaata gttacgttac cttgagtttt
     7201 tgctaataat tgagcgtgag cgtctaataa ttgacggtat tcaccttcaa ctgcatagct
     7261 gtcaaaaccg aagtatacag tgttgtattg tgcttttaat tgttcagctg ttaaaccacc
     7321 gaattcgcct gctgcatttg ctgctgcatt tgctgctgcg tttgctgctg catcatctga
     7381 tgagctgcta catgctgcta atgcgaaagc tggtactgct accattaata ctttagcaaa
     7441 ttttttcatt tgttgctcct aatagagaaa tattattatt tagttaagta tggtgaccat
     7501 gcagggaatt tataatgtcc acctgcgcca ggcaaattag ctttaaaacg cccatctgca
     7561 gacaccaatt gtagcacttt actcgtacct ttggtagagc tataaataac cataatgcca
     7621 ttcggtgaaa tacttggact ttcgtctaag aaagttgaac tcagtacttc tgtgccacct
     7681 gaagcgagat cgcgtttcac aactctatca ccggcaatca tgattaaatt cttaccatca
     7741 gatgatactt tcgcattata gctaccgcta ccgcccattg ggctagcacc accacctgat
     7801 gaactcattc tataaacttg aggagaacct gcacggtcag acgtaaagta gattgtgcta
     7861 ccatctggag accagcttgg ttcagtatta tttccagcat tagcggtcaa tttacttggt
     7921 gtaccaccgc cactacctac aacataaata tttaactcac catcttgatt tgaggcaaac
     7981 gcaatgcgag aaccgtctgg agagaatgat ggcgcaccat tatgtccttt caatgctgcc
     8041 actacacggc gagcacctga acgaatatcg tgaacaacaa cctgcgcttt tttattttca
     8101 aatgtcacat aagctaatct gctaccatct ggtgaccact ctggcgacat taaaggctct
     8161 ttactggttg taatagtaaa ggcattaaaa ccatcataat cagatactcg taattcatac
     8221 gatgatacgc cacgttgaac cacatacgca attttagttc taaatgcacc gcgaatttgg
     8281 gttaattttt caaatacctc atcacttact gtatgcgcac cttgacgaat ttgggctgcc
     8341 ggaacaataa atgaaccttg ggcaatgaca ccacccgctg tacccgatgt accaagagta
     8401 tcaattaatt gataagcgac attataaccg ccacctgtgc tactcacttg gccaactaca
     8461 atattatcaa taccgatagc actccattga tctgccacca cttccgctgc tgatcccggt
     8521 tgagcaggca tttgagagcg ttcaagcggt gtaaatttac cactatttcg caaatcatca
     8581 gaaataattt gtgcaacatc tgccggcaca ccgctggctt taaatggcac aaccgcaatc
     8641 ggctgagcca tacttacacc ttcatcaata gaaattcgca catcagaatc agcaaccacc
     8701 tgagttgtca ataatgctga aaagatgcct attacacccg atatacgaga gaataatttc
     8761 atttgtagtc ctctaaatta tttaactttt aaactaaaat caagtgttgg tgatttaaac
     8821 atattatata ccgcatctga tggtgcaggt ggtacttttc tagttgccac tattgcactt
     8881 accgctgcat cacatactgc tttatcgcca ctgataactt gatagttagt aattgtgcca
     8941 tctcgactta agaatatctt aacatcacat tgttttccgg caaaacttgg atcaacccga
     9001 tatcgagatt gaattaattt cttaattcgt tgaccatatg cattaccatc tacattagta
     9061 ccttgcccta agccacttgt accaccagaa ccttgtgatc ctgctgagtt tttgttacca
     9121 cctttacttg aaccaccacc gatgtctcca ctattgagga aatcatcaag tgctttattg
     9181 tttttcgctt gggcggcttt tgcctcagca gctgccttcg ctttagcttc tttctcggct
     9241 ttctctttgg cttctttttc tgcttttgct ttggcttctt tctcagcctt ttcttttgct
     9301 tctttttctg ccttggcttt agcttctttt tctgcttttt ccttcgcttc tttagcttct
     9361 tttgcctgct gttccttcag ttctttttgc tcttttaact ttttctcagc ttccgctttc
     9421 ttctgctgtt caagcttctt ttcaagtgct tctttagctt ttttctcttc ttcagcttgt
     9481 ttagcagcag cctctaaacg cttagcttct gcatctgctt tcagttttgc tgcttcagct
     9541 gcttttttac gagttgcttc ttctgcttgc tgctttttaa gctcttcttg cttagcttgt
     9601 gcttgctttt gctgttcttg tagtttttgc tgacgctcaa tttcttgctg acgctgtttc
     9661 tcttgaatcg ccgctaactc agcttgtttc tgtttttgga tctcttccgg agtcggttta
     9721 tcttccacat cttcttcaac agcttcctct ttaggctcta cctttggctt cgatgctttt
     9781 gagccttttt tctctgccaa taactgccca tattcagcag ccacttgccc agtatctacc
     9841 atcacagctt caaagctatc gctatcgcca ccactgccac cagccgcagc gagttccgtc
     9901 ttagtgaaaa gagacccgag caataacaac ccgattaaca atatatgcaa taagatcgaa
     9961 acaataaccg ctagctctag tctatcttgt tgagatttca cacgttatcc ttggctattt
    10021 accttctgtc attaaaccta ccgatttcac tccggcgtct ttaagtagtg taataccttt
    10081 cataatttct tcataaggta ctactttatc accggcaact aaaaataagg tattgttatc
    10141 tttttgaaat tgttcccctg cataggcaac aacttctgat tcattaatat tctcttgccc
    10201 attactttgc acatagttac cgtcaatttt caatttatat tcaccaacac ctgccacctc
    10261 caaaatcact ggagttttat cttcattaga aactgattgg ctatgcgtat cttccggtaa
    10321 attaacttct acactttgac tgataattgg ggccgttgcc ataaaaatca gcaataatac
    10381 caacaataca tcaagaaatg gaacaatgtt gatttctgat ttaatgtcat tacgttttaa
    10441 acgacgagac atatattcct ctttacaggt gcttagcacc ttaattgatc tgaaataacc
    10501 ggcacagtgt cccggtctcg aataatgcgg ttacaagcgg tcttttttac gaaaaacttt
    10561 acaaattttc attaaaaatc aaccgcttgt agattatctt tttgaaaaag cctgacggtg
    10621 taataaggtc gtgaactcat caatgaaatt cacataccct tgctcaactt tacctaaacg
    10681 taaattcaaa cggttatatg ccattactgc aggaatcgcc gcaaataaac cgatagccgt
    10741 tgcaattaat gcttctgcaa tacccggtgc gactgattgt aaagttgctt gcttaactgc
    10801 acttaatccc ataaaggagt gcataattcc ccaaaccgtt ccgaataaac caatatatgg
    10861 gctgattgaa cccactgtgc ctaaaaacgg aatgtagttt tctaaacttt ccatttcacg
    10921 gtttaatgct aagttcatcg cacgggtaga accttgaata atcgattctg gcgcatctgg
    10981 gttcgcttgt tgtaaacggg taaattcttt aaacccaaca taaaagattt gctctgaacc
    11041 atttaatgca tcacgacgat tctctaaacc ttggtgtaaa cggtttagat cttcccctga
    11101 ccagaatcga tcttcaaaag caagggaatc ttttttggct ttagttaaaa ttttgctgcg
    11161 ctgaataatc accgcccaag acaaaattga gaatacaata aggatcagca tcacgatctt
    11221 taccacaata cttgcttcta aaaataacga aagaagacta aattcagttt gcattaataa
    11281 aactccgaat agtttttaaa tagaaaaata acttttttgt aatgcttgac gaatatcatc
    11341 aggaattgca accggcttca ttttgattaa atcaacacaa gcgaccgtaa catttgcctc
    11401 actcagacaa tcgccatctt tccacaatcg ttgtttaaag ataagggttg ctttcttcaa
    11461 ttctgagagt gttgtttcca catttaataa atcatctaaa cgagcaggga gcttataatc
    11521 tatttcaatc ctcttaacaa caaaagcaag ggattggcta aaaagttcct gctgtgagaa
    11581 atgctgctgt ctcaaaaatt ccgttcttgc ccgctcaaaa aaattcagat agttggaatg
    11641 ataaactact ccgccggcat cagtatcttc ataataaaca cgaatcggga aatccataag
    11701 cattatttct ctcattcaaa atgaaaaaac gcccaaaatt taggcgcaaa ttgtgagat
//
LOCUS       DANLUT010000072        11577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLUT010000072 DANLUT010000000
VERSION     DANLUT010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..4457)
                     /gene="mukB"
                     /locus_tag="PXB38_001467"
     CDS             complement(<1..4457)
                     /gene="mukB"
                     /locus_tag="PXB38_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL5353784.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTVLIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAEQALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDYVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFESVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQLLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFA"
     gene            complement(4633..5349)
                     /gene="mukE"
                     /locus_tag="PXB38_001468"
     CDS             complement(4633..5349)
                     /gene="mukE"
                     /locus_tag="PXB38_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL5353785.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKVGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5398..6741)
                     /gene="mukF"
                     /locus_tag="PXB38_001469"
     CDS             complement(5398..6741)
                     /gene="mukF"
                     /locus_tag="PXB38_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL5353786.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAGIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(6999..7886)
                     /gene="galU"
                     /locus_tag="PXB38_001470"
     CDS             complement(6999..7886)
                     /gene="galU"
                     /locus_tag="PXB38_001470"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL5353787.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLTLADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGDKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8022..8207)
                     /gene="csrA"
                     /locus_tag="PXB38_001471"
     CDS             complement(8022..8207)
                     /gene="csrA"
                     /locus_tag="PXB38_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL5353788.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8297..10924)
                     /gene="alaS"
                     /locus_tag="PXB38_001472"
     CDS             complement(8297..10924)
                     /gene="alaS"
                     /locus_tag="PXB38_001472"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL5353789.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
     gene            complement(11119..11544)
                     /locus_tag="PXB38_001473"
     CDS             complement(11119..11544)
                     /locus_tag="PXB38_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5353790.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQDSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRQVMNNITVDMLVVPLADE"
BASE COUNT         3132 a         2688 c         2198 g         3559 t
ORIGIN      
        1 ttagcaaagc cttttaaacc aacaacgtga acatactctt ggttattggt gattttacgc
       61 accaatttat aagttgtgcc tcgttcaggg ctaatatttt caggggctgc aattaataac
      121 tgcatatcca aacgttcgca gagttcaaat agcgtattaa ttgaggtagc atctaatcga
      181 gccgcttcat ctaagaacaa taagcgagcc ggtagaatat ctttggcacg catacggcga
      241 gcttcttctt cccagctttg aactaccatt aagagaatcg acatacctgt accgatcgcc
      301 tcaccggtcg ataatgcact actttctgca cgcatccagc cgtctgcacc acggaaggtt
      361 tccacttcta aatctaagta gttacggtaa tccaataact cttcaccaat ggtctgtggt
      421 gtacgttgcc ccatctcaat atgagggttc acccgtttat acaacatcgc taaggcttcg
      481 gagaagctca gtttttggct gtcgaataaa tctttgtgtt cctcacgatt attggataac
      541 gcattgagta aaatagcgtg cgtatctcgg atattcacca ccaaacgcac cccttttacc
      601 tgaccgaatg caatattttg taaaccttgg ttcagttgca aaatgcgttg ttgttcacgc
      661 tgaatggttt tacgtaaaat atttgccaca ctttccgcac tgatcgccag ttttttctca
      721 cgaccggtta attcattggt taagcgtgaa agctcgattt ccatctgctc aatcgcatca
      781 atcggatcat cggttttgat aatgtcttgg cgaatccgct cacgcaaatg ctgataaacc
      841 gcaataaaga acgccacttt gttttccggc ttgcgactat cttcagaagc ccgcaagcta
      901 tcacgtaggt attcattatc cgccacggcg gtgcgtaatg ccccgagagc tttatccgaa
      961 atcgaacgta attcttcagc cgattgataa gccaattcac ggcgatttaa acgtttttcc
     1021 acatcgctgt tacgagataa acgttgcaca atacaccagc tggcttttgc ctgcaccacc
     1081 aattcacgtt gtgtatgata atcacgttcg gctttacgta aggtgcggtt aaggttatcc
     1141 atttccgcct cgatcaccgc aatttgttta tctaaataac ctttgcggga acgttgctgg
     1201 cttaaacgtt gttgcaattc atcacggcgg aatctggctc gctcttccgc tccgctatca
     1261 ccacgcacgc ccaaatcgtc aatttcacga attaactctt gtagcatttg gtttttcgcc
     1321 tcataagaac tgcgtaagcc ggtcaatact tggttatatt gtgaaagttg agcttgagct
     1381 tgacgcagct gatcacgagc ctgttcacgc tcacgttgtg cattttccaa acgttggcgt
     1441 agctgttcgg ttaatgcaga gccttctgta cccaccgttt cttgatagct aaaatggagg
     1501 cggcgattca ttacatcagc caagctgaac actttttgct gtaacacttt ttgctcggca
     1561 actgaacggc ggtaatcggc ttccaactgt tcaaataaag ccggatcact ttttaatgcg
     1621 gctgcaatcg gctcaagttg gcttaatgtt gctccaaatt ggcggataaa catttcatct
     1681 tcttctgcca attctaattg ctcacgacat tcctccgctc gtgcttccag cgtttcatcg
     1741 gctaataaat tcgcaagcgg tagaatttta ttcaacattt gcaactgggc ttttacgctt
     1801 tctaattggt gacgtaattg ctgttcgtta ccggctgatt gtgccaattc acgttcaatt
     1861 tctgcccgtt ctgccgcaat ctcttgcatt aacatttcag ggttttcttg gaacgctaaa
     1921 tttaagtgcg tgccgataaa ttggcttaag tgttgatgta aacgctggca tttctgcaca
     1981 tcaaaggcac gttcagcgtg tttttctgcg gtttcatcac gctctgcttt taaagtcgct
     2041 aaatgttttt cacgagcagc acgtccgaat aacggcactt cagggaattt agaataacgc
     2101 cattggcgat cggagacttt caccaccacg ccttcgccta attcctcggc actaaatacc
     2161 gcatcgtcaa aggcggacgg atcaccttca attaaataaa gatcacttgg gcaatcgtct
     2221 aatttctcta gctgtgtttt aaccgcctct aaatcacgca ctacaatagc gtggcgagcc
     2281 tcgccgtata aggcggagaa ataaggcgca tcttcaattg atacatcatc atataactca
     2341 gagagtaaca ctccaccaaa acgttctgcc aactggttta agcgggcgtc ttccgagccg
     2401 tccggctggc ttaagcgatt aatttgctca tcaagcagtt gttctttacg agccaattca
     2461 tcacgagcaa gggtggcttc acgctctttg ctcagcatat tttgcataaa ctgcatcact
     2521 gattggctgg cttcaaactt ctcgccacat tgctcttcta aacgagtcag agccgattgt
     2581 gccgtatgcc aagccggtgc attcttcgct aattgctgat attgttgatt aagctgttca
     2641 cgttgttggc gttgggttga acgttgttct acaaagtccg aaagctctgc ctctaaatct
     2701 tctaggcgag cttgctgctc ttcaaaatag gcgtctaatt cttccgctga attgagttgt
     2761 tgttgcgatt tttggttaaa ttccgccact aaacgctggg cattttgctg ttgttgcaaa
     2821 cgctgttcta aatcgttgag tttttgacgt aaactcaccg cttgctgagc ttgcattttt
     2881 tgctcaggga aggcagaaag taacgcacga gcctcttccc acgcttgcaa gcggtcaatt
     2941 tcaccggaaa ttttgcaaac cgattcaaac gctttttcaa attgggtttt cgccatatcc
     3001 gacacgctta aacgttgttc cagctcaaat acttgatcgg taagatcttc ggcttgagcc
     3061 acaaattctg cgtggtaatc ttcaatatta tttaaatcta aattcactaa gccggttagc
     3121 tgtttggctt tttctaacgc attcaccgct tgttggtatt gcaatgcacg agtttgctgt
     3181 gcatctaagg cttgttggta atccgccatt tgagaacgca attcttcaac gtaatcatct
     3241 gcctcatccg cacgagcctg agcattttcg gcaatttccg caatttcttc caatgcctct
     3301 tgctgttctt ccagcttaat attcagctct tcaacttcgt cttggtagcg ttcgattttc
     3361 tcttggtggc gtaacgcatt catcactaaa tttagatgat cgttcgcact attgtaatcc
     3421 gcctctaacg cctgctctgc ttcggcaata tccgcacttt cacggctaaa ttccacaaag
     3481 cgttgctgtt cgagcaaaat tttggatttt gccgcatacc actctttgcg ttgctctaag
     3541 gcttgttgta cattgccacg gcgttcattc gcattacgca tataatccgc cgacacataa
     3601 ttggtcgatt cggtaattaa gcgtttgaac atatcccgat ccgattgcgt gaccttaatc
     3661 gcctctaagg tcatacggtt ttcacgcaga gcggattcca tatcttggaa cgcttggcga
     3721 acgcccgtat tttccggcaa caagtaatca cgcaaggatt tggtgatcac acttgaaata
     3781 ccaccataaa gcgaggcttc gattaatttg tagaatttgc tacggtcggc tgccgaacga
     3841 aggcgttttg ggattacgcc caaatcgaac ataaaactgt ggtaatcagt aatcgaatgg
     3901 tactgtttga attggacttc gctgttctca aattgatctt tgagttcatt taacgccagc
     3961 actcgagcct tattccccac ttgttcggtc agtaggctga taatgctttg ctcttgagga
     4021 atattctgga gcgagaacga acgaatatcg acttttttat cccgtccgac aatttgttgc
     4081 aaacgcacgc cggtaataat ccgttgccca cgggaattga atgactctaa caccgcatag
     4141 caaacacccg cttttaactt accgtataag cctttatcac gagaaccggc ggttgagcct
     4201 gcttcagtcg tattacggaa attaagcaag gttaaatctg ggatcaagac ggtcacaaac
     4261 cctgccattg tggtagactt acctgccccg ttaccgcctg aaagcgtggt cactaagtca
     4321 tctaaatcaa aggttcgagc aaaaaaaccg ttccagttaa tcagcgttaa agagagaaat
     4381 ttaccgcgtt gtacatcatt cgggcgtgca agcggtgcaa tttgaggatt attttgcaat
     4441 tctgtggtat caatcattat gttttctcac taattgtcct agcacgctaa agcgtactag
     4501 gttaggtata ggtgagtagc tccgctactc taatcgcaac ctcagccttg gagggctgct
     4561 ttatgcttaa cctagttcgg ctttaccgtg tctagggcag actcattaaa tgctgaatct
     4621 attcgaatga aatcactcat tttctccgtc aaagggggct tcatctgcaa tattttcatc
     4681 tatttcaacc gcttgttcgt ttaacaacgc aggggttgtc gcttcaccat cacgaattaa
     4741 gcgaagctgt gcctctcttg ggtcatcacc ggtacgcaca tcagccccaa aacggaagac
     4801 cgattctgaa atcacaaatt ttttgctgtt ttgctcgcct actcgggtaa taatgccgat
     4861 acgggctaat ctgcgtaacg ctccgccgac tttttctgcc agcttggcac ggtctaaatc
     4921 ggaaccggtc gaacgtgggt ttaccgcttt taataatttg ctttcatcgg caagactgag
     4981 taattcttca tacacatcat cttggctgaa aatcccctgc tgagccaaac gttccggact
     5041 taaatagagg tagcacaaca ccttacccac taacatttcc atttctgaca ttgccgaacg
     5101 ggcaattagt gtcgaggctt tcgggcgtag gtagaaaaag ccttccggtg ctcgaatcaa
     5161 ctcaacgtga taacggcggt aaaaactctc tagttccgct tgaaaatcca tcaaaaagac
     5221 gtgttggtca agctgctcgg tattgatatg gcgaccggct cgtaattggc tgtctagctc
     5281 cggaaaaatc gggttggcaa tcgcaagtgc cagtttcggg gaaatgaaat cttggatatt
     5341 ctctgtcatt gtcattctct tcaattttgc aaaattctgg gtaaaaacga ccgcttgtta
     5401 tttattgtat tggtcgataa cattcgcctg cacttccgcc ccttgctcgt taatcggctg
     5461 ccattgtggg taaacggctt ggctatcttg gcttgccata cctaacttaa cagcttgatc
     5521 gacaataata cgagccacgt caaaatggcg ggattccggg aatcgggcaa gctgttcacg
     5581 caagataacg cctaaatcta tcggtttacc ttcagcacgg aacggcgcta aatgagcttg
     5641 cattgccgaa acaatttgct cttgcacatc tgaaagcgac tcatactcta actcacttgg
     5701 caactcgccc accgattctg cctcatttaa cattgcttca tcatcacgca agtccagtaa
     5761 cgaatcggct tttgcagtat aaagcaacca agggctgttg taataatctt gaatcgattg
     5821 gcgtaaccgt tgcccgaata cacggttttt gtccatatca atcgctgtac gaataaattt
     5881 atgcacatgg cggtcatagc cgatccaaag atcgatagct tgttgtcccc agctgataat
     5941 acggtctaac ttattttgta gattcacaat cagctgatcg ataaaatcca aatcattacg
     6001 agccatcagg caactttgaa tccgcaataa ttgagcttgc agtttatcac cagcggcatt
     6061 taaggtatct tgcaactcac gcaaattccc cgaggtttcg tctaacaatt gctcacaact
     6121 cataattgct tcgtgccagt tttggctaag cagttcggct attcgttcac ggatttggtg
     6181 ctgattttcg tccataatcc gttgtgaaag atcgatgctg tcaaagattc cggccaccga
     6241 atatttcaat ggggcaaaca cattatttcg ccaaaaacgt tcatcttgtg cctgctctat
     6301 tccctcttcc gctgctactg aagctcgctg aatttcatct gccacaatcg aaagttgaat
     6361 cgataaacgc agggtagaaa attcccgctg gcgaacgtaa taatttgaaa ttcccacccc
     6421 taacggcgta acacgataaa tcgccaaacc ttccgtaaat tcgctactaa aacggtttaa
     6481 caaccgttgt ctgactaaat cattaatcgc attattggca cgctgggtaa aagtggcatc
     6541 agattgctca aacgaatttg aaacataacg gaaaagatca ataagatcac tttctaacaa
     6601 ttcaccatct gtctgttctt ggttataaat agagatagca agtagaaacg ctaagcggtc
     6661 ggaagaaagc gaaagtgaaa attcacgatc tttcgtccaa gagatgagtt ctggaatagt
     6721 ctgtgccaat tcgttctgca tacgggctta atctttaatt tctatacaaa aatggtattt
     6781 attgtaactg aatgtaatca aaatgggaat ggataaaacg cagacaagag aaatgaacaa
     6841 tataagcggt caaatatggg tgattttttg caaaaagtat tttaaaggta aatgaatccg
     6901 aaaatttatt atcactacgc taatttatga taccataaat agaaaggact ggatccaata
     6961 gaatatcaga ccttagatca tagtctaaac tctaaggctt agagtgattt agctaactct
     7021 ttaataaatg ctttaaattc ttttccgcat ttgtcatgat ttaaactata ttctacaaat
     7081 gctttcatat agccgacttt atcaccacaa tcaaatgagc gccctgtcat atgaaaagct
     7141 tcaaccgttt cttggtgaat caacatatca attgcatccg tcagctggat ttcatcacct
     7201 acgcctactg gcgttttttc taataaattc caaatatttg aggaaaatac ataacgtcct
     7261 actaccgcta aattagaagg cgcctcttca atacttggtt tttcaaccat tttcgcaata
     7321 ggcgctgccc ccccgagagg gatatctaca ccatggcagt cagcaacccc atagctactt
     7381 acattttcca ttggaaccgg cgcaaccata atttggctat atccggtttc ttggaaacgc
     7441 ttcaccatcg cagctaaatt ttccgttttt tggtttgctg taaattcacc aagtaataca
     7501 tctggtaata caaccgcaaa cggttcatcg ccaaccactg ttcgtccaca tagaaccgca
     7561 tgacctaaac ctttggcttg cccttggcga acgtgaatta aggtaacatc ttttggtaca
     7621 atagaacgta catcatctaa taattgacgt tttactcgtt tctccagcat cgtttccaat
     7681 tcaaaagagg tatcaaaatg gttttcgata gcattctttg aagagtgagt aaccaataca
     7741 atttctttaa aacctgcagc cacacattca tttacaatgt attgaataag aggtttatct
     7801 gcaagggtaa gcatttcttt tggaatagct ttggttgcgg gtaacatgcg cgttcccaat
     7861 ccagcaacag gaataatgac tttcatttgg aatcctttga tgacttaaca tattagatat
     7921 aactgaaata aaccgcttag acataacaag cggtcaattt tcagaaaatt ttgcattgcc
     7981 tgcttcgctg ttatcatcta gcagctttac agttaaaatg cttattccgc attttcctct
     8041 tctactgagg cttttattct ttcataaatc tctcggcggt gtacagagat ttcttttggt
     8101 gcattcacac ctaatttaac ttgatttcct cggatgctga gtaccgtaat ctcaacatca
     8161 tctcctacga gtaaaacttc cccaatctta cgagttagaa taagcataat tgtctcctaa
     8221 aaagtgaaaa actctataaa tacttaaata tagagtaaag ttttaaaggc gagttcagct
     8281 cgccttgtta ttatttttaa agttttgctg taatccattc ttgagcaagt gacaatgcct
     8341 gcaataaatg ttgtggttct gagcctccgg ccattgccat atcaggacgt ccgccccctt
     8401 tacctcccac tttttcagcc attgcaccaa ctaattgacc cgcattgact ttatcggtta
     8461 aatctttggt cacacctaca atcaaattga ctttatcttc cgccgtagtc gcaaatacaa
     8521 caactgcact gcctaattga ttttttaggt catcaaccat cgttctcaat gcttttggtt
     8581 caacattctc taattgttga atcactacat tcacgccatt gatttgggta gcttgtttgg
     8641 ctaaatctga acctgcttgt gctgcaagtt tatcttttag ctgttgaagc tctttttctg
     8701 tacgtttagc cttctcttgt aattgaacaa ttttctcaac gaatgaatga ctgtctgctt
     8761 ttaacaattc agcactttgt tgaacggctt gttgtaaggt atgcaaccaa gcaatcgcat
     8821 tttcaccagt gacagcctct atacggcgta cacctgctgc taccgcacct tcagaggtaa
     8881 ttttgaataa gccaatatca ccggtttgtt taacgtgtgt gccgccacaa agttcaatcg
     8941 agaaatctga catttccact acacgcacta cttcgccata tttttcacca aataacgcca
     9001 ttgcaccttt cgcttttgca gattcaatat ccatttcttc aatgattacc tgaatatttt
     9061 cacgcacttt agcattcacg atacgttcaa cttcttcaag ttgtgattta gtaattgctt
     9121 ccggctgaga aatatcaaaa cgtaaaatat tttctgacac taatgagcct ttttgagcaa
     9181 cgtggtcgcc tagcacttgg cgtaacgcag aatgcagtaa gtgggtagca ctgtggttta
     9241 atgtaatagc atgacgacgc tctctatcta cgatcgtatt aactttgtcg ccaacagaaa
     9301 gtgagccgga agttaattgc ccaatatgcc cgaatacttg accatatttt tgcgtatcta
     9361 ctacctcaaa attgcaaatt tctgcggaaa tttgaccgct atctcccact tgtccgccca
     9421 tttctgcata gaatggggtt ttatctaaaa tcactaccgc attttcaccc gattgaatag
     9481 actcaaccga ttttccatta ctaaataacc caattacagt agcatcattt aagctggttt
     9541 cagtatatcc actaaagcat gttttactgt ccactttaat cacattgtta taatctgtgc
     9601 caaagctact gctggctttc gcacgctcac gttgtgcggt catttctgca ttgaagccgt
     9661 cttcgtcaat tttaatatca cgttcacggc aaacatctgc ggttaaatct aacgggaagc
     9721 cataagtatc ataaagtttg aacgcaactt cgccagataa ggtgttattt tcaaccttcg
     9781 ctaatgcttc ttctaataaa ttcaatccac gctcaagagt acgggcaaat tgctcttctt
     9841 ctgctttgag tgtcttttga atatgcgctt gtttttgggt cagcacctca ccagcttgcc
     9901 ccattaccgt tgcaagtgtt ggcaccaatt tatagaaaaa ggcttctttt gtacccaaaa
     9961 tattaccgtg acgaaccgca cggcggataa tacggcgtaa tacatagcct cttccttcat
    10021 ttgaaggtaa aacaccatcg gcaatcagat aggaacaagc acgaatatgg tctgccacta
    10081 cacgtaaaga tttattatct aaatctttca cattaagcaa agtagcgact tctttaatta
    10141 aagtttggaa aatatccgtt tcgtagttgg agtttacgtg ttgcattacc gcagtcatac
    10201 gttctaaccc catccctgta tctacagaag gcttaggcag tttttccatc gtaccgtctg
    10261 ctaaacgatt gaactgcata aatacaatat tccatacctc aatatagcgg tcgccatctt
    10321 cttctgggct acccggtaag ccaccccaat gttcaggccc gtgatcatag aaaatctcgg
    10381 tacaagggcc acaagggccg gtatcgccca tcgcccagaa gttatctgaa gcataaggtg
    10441 cgcctttatt atcgccaatg cgaataatat gttccgatgg tacacctact tctttatgcc
    10501 aaatatcgta ggcttcatca tcagtttcat acacagttac atataatttt tcttttggta
    10561 agccaagcca ttgtggagaa gttaaaaact cccaaccgaa tttgattgca tcttgcttga
    10621 agtaatcacc aaagctgaaa ttccccatca tttcaaaaaa agtatgatgg cgagcggtat
    10681 aacctacgtt ttctaaatca ttgtgtttac cacctgcacg tacacaacgt tgtgccgtag
    10741 tcgctctgct ataagggcgt ttttctaacc caagaaaaac atctttgaat tggttcatgc
    10801 ccgcattggt aaataataat gtcggatcat tctcgggaac aagagagctg cttggaacaa
    10861 tcgtatgtcc tttagtttgg aaaaactcta gaaaagattg tctgatatct gaagttgttt
    10921 tcattaaaaa tcactctttt tgtaaataga agttaaacat ttagttatct tgctatttta
    10981 cacatttttt atgctattgg gggagctata tgctacttat tttttcaatt aaataatttt
    11041 tgtaaatttt cccaaaaaaa taaccgcttg taagacagat aaactgtctc aagcggttat
    11101 ttttcattca ttttcttgct attcatctgc taatggcaca accagcatat caacagtgat
    11161 attattcatg acttgacgag ttgaagacat aaatttactc cagaagtcct gatgatggcc
    11221 agtgatgagt aaatcgacat tgtgtttttc tacggcctct tccaaaactt gactaaaatc
    11281 tcccgttccg tttaaacatt cagatacagg ataatttact tttgaggcaa gttcagccag
    11341 tgccgtattt gtttcttcaa caacactgtc ttgtaccgaa gacatattaa tatcaattaa
    11401 tcctgtatag agatccgaaa aattaacatc aacgtgaatg agggaaagtt tagctccgca
    11461 tttttctgct aacgcagccc ccttacgcac taaaacaaga ctttcttcag aaagatccac
    11521 tgcaactaag atatgtttat acataatatg ctccttgctt gtgagagttg tttactt
//
LOCUS       DANLUT010000073        11540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLUT010000073 DANLUT010000000
VERSION     DANLUT010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            103..1995
                     /gene="mnmG"
                     /locus_tag="PXB38_001474"
     CDS             103..1995
                     /gene="mnmG"
                     /locus_tag="PXB38_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL5353791.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINVA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQAAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2090..2314
                     /locus_tag="PXB38_001475"
     CDS             2090..2314
                     /locus_tag="PXB38_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353792.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2327..2941
                     /gene="rsmG"
                     /locus_tag="PXB38_001476"
     CDS             2327..2941
                     /gene="rsmG"
                     /locus_tag="PXB38_001476"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL5353793.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEITEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3209..4571
                     /locus_tag="PXB38_001477"
                     /pseudo
     CDS             3209..4571
                     /locus_tag="PXB38_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            4594..5640
                     /locus_tag="PXB38_001478"
     CDS             4594..5640
                     /locus_tag="PXB38_001478"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL5353794.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5643..6281
                     /locus_tag="PXB38_001479"
     CDS             5643..6281
                     /locus_tag="PXB38_001479"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL5353795.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6300..7280
                     /locus_tag="PXB38_001480"
     CDS             6300..7280
                     /locus_tag="PXB38_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5353796.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETVEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7342..8682)
                     /locus_tag="PXB38_001481"
     CDS             complement(7342..8682)
                     /locus_tag="PXB38_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353797.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8872..9945)
                     /gene="glpQ"
                     /locus_tag="PXB38_001482"
     CDS             complement(8872..9945)
                     /gene="glpQ"
                     /locus_tag="PXB38_001482"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL5353798.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10015..11460)
                     /gene="glpT"
                     /locus_tag="PXB38_001483"
     CDS             complement(10015..11460)
                     /gene="glpT"
                     /locus_tag="PXB38_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL5353799.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3330 a         2431 c         2485 g         3294 t
ORIGIN      
        1 ttagatctta acctctctaa aaatctattt cccagatgat ccctttttac gctaaaatat
       61 gcgctcattt ttcagcagaa tttgtaagat agtagaagag atatgattta caaccaaatt
      121 tacgatgtga tcgtggtcgg cggtggtcac gccggcacag aagcggccct agcaccggca
      181 cgaatgggct taaaaaccct gattttaacc cacaatgttg ataccttagg gcaaatgtcg
      241 tgcaacccgg ctatcggagg gatcggcaaa ggccatctgg ttaaagagat cgatgcgatg
      301 ggcggtttaa tggcaaaagc aacagacgtt gccgggatcc aattccgtac cctaaacaac
      361 tcaaaagggc ctgcggtgcg tgccacccgt gcccaagctg accgtgtgct ttaccgtaat
      421 gcggtacgca ctgcgttaga aaatcaacca aatttagata ttttccagca agaagtagtg
      481 gatattttgg tggaaaacaa ccgtgcagtg ggtgcagtta ccaaaatggg cttaacgttt
      541 aaagcccgtg cggtagtttt aaccgctggt acgttcttag cgggtaagat ccacattggg
      601 ttggataact atgcaggtgg tcgtgccggc gatcctgctg caacaatgtt ggcagatcgt
      661 ctgcgtgatc tgaatttgcg tgttgatcgc cttaaaacag gtacaccacc tcgcctcgat
      721 gcccgtacca tcaactttga cgtacttgcc aaacagcacg gcgatgaggt gttacctgtc
      781 ttctctttta tgggcgatgt ctcacagcac ccacgccaaa ttccgtgcta catcacccac
      841 actaacgatc aaacccacga tttaattcgc aacagtcttg atcgcagccc gatgtacacc
      901 ggtattatcg aaggggttgg tccacgttac tgcccgtcta ttgaagataa agtaatgcgt
      961 tttgccgatc gtaatagcca ccagatctac cttgaaccgg aaggcttaaa tacgattgag
     1021 gtttacccga acgggatctc caccagcttg ccgtttgatg tgcaaatggg gatcgtcaac
     1081 tcaatgaaag gcttggaaaa cacccgcatc atcaaaccgg gctatgcgat tgagtacgac
     1141 tacttcgacc cgcgtgattt aaaaccaacc cttgaaacca aagcgattga cggtttattc
     1201 tttgccggac aaattaacgg cacgaccggt tacgaagagg caggtgcgca aggtttgctg
     1261 gcagggatta acgtagcgtt acaggttcaa ggtaaagagg cgtggtatcc aacccgtgat
     1321 caagcctaca ccggcgtgtt ggtggacgac ctctgtacat taggcaccaa agagccatac
     1381 cgtgtgttta cctctcgtgc cgaataccgt ctgttgctgc gtgaagacaa tgcggacatt
     1441 cgtttaacac caaaagccca cgaactagga ttaattgacg aggcacgttg ggtgcgtttc
     1501 aaccaaaaaa tggaagcgat tgagcaagaa agagctcgtt tgaaatccac ttgggcacat
     1561 ttgcaaatgc caaatctgga cgaattgaac gcgttattgg ctaatccttt agcccgtgaa
     1621 gcaagcggtg aagacttaat ccgccgtcct gaaatgagtt acgaaaagct gacccaaatc
     1681 gccctatttg cccctgctat tgaagacaag caagcggcag aacaggtgga aattgcgatc
     1741 aaatatcagg gctatattga gcatcaatac aacgaaatcg aacgccataa acgccacgaa
     1801 aacaccctga ttccggtaga gtttgactac gacaaagtcg aaagcctctc caacgaagtg
     1861 cgagctaaat tgatgcaaca ccgccctgtc tccatcgggc aggcaagtcg catttccggc
     1921 atcacaccgg cagcgatttc cattctgttg gtgaatttga agaagcaagg aatgttgaaa
     1981 cggggtgagc tgtaaatact acaagcggtt ggttttgcag aaatttttgc aaaattgacc
     2041 gcttgtattc tttggagaag gaaatacccg aactaccgcc gtatttttaa tgatatatct
     2101 gcgtaaactc ggtttttcgc cgttcgatca ccaaatgttt gcccaacctt cgtggtattt
     2161 ctgcaatgca cttgttcata ccaattatga aaatctgcga caaggtgtat ttgtgactaa
     2221 agcgtattta gtgatgtttc ttgaaaattt attgtttgaa aaaagtcatt cgttaagtaa
     2281 tcgggcattg cgtattaatg aaaataatga ttaaggaatt tgcaaaatgt tagctaaatt
     2341 aaaccgcttg cttgctcaag ccgaaataaa tttgaccgat caacaaaaag agcagttagt
     2401 tggttttgtg agattattgg ataaatggaa taaggcgtat aacctcactt ccgttcgcaa
     2461 ccctgatgaa atgttggtta aacatatttt ggacagcctt gttgttagtc gtcatttaca
     2521 aggcgaaacg tttattgatg tcggcacggg gccggggcta ccgggcattc cgctggcgat
     2581 tgctaaccct gataaacagt tcgtgctact agacagctta ggcaaacgca tcacttttat
     2641 caaaaatgcg ttgcgtgagc ttggtattaa aaacgttacc ccagtgcaaa gtcgagtgga
     2701 ggaatacact gaaagccagt ttgacggcgt attaagccga gcctttgcct cgcttaatga
     2761 tatgatcgac tggtgttatc atttaccgac tgaaaacggt aaattttatg cattaaaagg
     2821 cgtgtatgat gagcaggaaa taactgaaat caaacaaccg attcagctag tggaagtgat
     2881 taagcttgaa gtacctgagt tggtaggaga acggcattta gtagtgttga aaaagcccta
     2941 atacattgga agtttaatga tacaagcggt cgaatttgta aatttttttg caaatctgac
     3001 tgcttgtgtt aactattttt cataaagcat acctggttaa taaggtgtgc tttttttata
     3061 acctattatt tcatctgatt tatttctatt ttgtgatgtg cttcacaaaa acaaaaaaac
     3121 ataatgtagt aaaaaatatt cgtaattgaa gcccttattt ctttacctga aaataagcga
     3181 acttaattat ataacgagga ggttcgtaat gaacagggta acaaataagg cagatgagtt
     3241 tgctaaactc agtacgtttg aacgtattgc ttatggtagt ggcgacttag cccaaaattt
     3301 agtttttggt acagttggtg gtttcttact cacttacgta actactgtaa acggcatttc
     3361 tgccgtagca ggagtaacga ttttcttaat tgtaaaatgg ggaaatgtgt tttgggatcc
     3421 gtttgtcggt gcctttattg acaaaagcaa gccctcagca cagggtaaat accgcccgta
     3481 tttactgaaa tttgggattc ctcttgtggt tttagcttca ctactatttc ttcctcttga
     3541 atcagtacgt ggctcagtga tttatgcttt cctttcttat tttgccactg cgatgggtta
     3601 atattcctta tggctcgctt tctgcttctc ttactcgaga cacagacgaa attgctaaat
     3661 taaccacaac ccgtatgaca atggcaaata tcgctaattt gtttgtttat accttattcc
     3721 cactttttgt gtagttactt gcaccacacg ccgaattaaa aaacaccggc tttttcggta
     3781 ttgagctcta tttaggtgat tatatgtctg ctgctgcagg ccctgcttgg tttaaggttt
     3841 atgcggtcta tatggtaatt ggatttgtgg cgttaatgct ctcttatttt ggtactaaag
     3901 agcggattat tccaacagcg gaagaaacag ataaagtcaa gtattcagat ttagttaatg
     3961 aactcaaacg caatcgtcca ttacagattt tagggttatt cttcttaata ggttttactt
     4021 ttatgttctt cggaaatacg gtgtggcctt tttacctaaa atataatatt gggcattctg
     4081 agtggattgc ctccgtcggt ttattaggct ctatccttgg gattttcgtt ctagggcaac
     4141 tttgtctatg ggtatggcaa tttgactcct tcaaatactc tccaacctta ggctatatcg
     4201 gtcgtttctt acaacaatgg ggattaactt ctgctaccgg ttttatgtgg gcgttagtgc
     4261 ctgaggttgt tacctttgga gagtttaagt cgaaaaaacg tgtagcaggt attattaatg
     4321 cgttaatggg cttgttcttt aaaatcggct tggcgttagg cggtattatt ccgggttata
     4381 ttaatgcggt ttatggtttt aacggctcgc ttttggctca aaccgaagag gctttatttg
     4441 gtatcaatct ttcaatgatt tgggctccaa ttattttagc gattattgca ggatttgtga
     4501 tgagtcgcta tccgttaagc gatactgata ttgatcatat caacgaaaaa attactgctt
     4561 attccaaata atttgagtat aggagaatag attatgcaaa ttcaaaatcc agttttaccc
     4621 ggtttcaatc cagatccatc tattgtgcgt gtgggtgata cttactacat tgcaacttct
     4681 acttttgaat ggtttccggg agtgagaatt cacgaatcga aagatttagt gcattggaat
     4741 ttagttaaaa atgtcttaga tacaaccacg ttgttagata tgcgaggcaa tccctcttca
     4801 ggtggtatct gggctcctga tctttcttat gcggaaggta aattttggtt ggtttatacc
     4861 gatgtaaaaa ttacagacgg tgcattcaaa gatatgacta actatctaac tactgccaaa
     4921 gaaattcaag gtccttggtc agctccgatt aaattgaatg gtattgggtt tgatgcttcg
     4981 ttgtttcacg atgatgatgg gcgaaaatat ttagtgcaac agacttggga tcaccgtgaa
     5041 tatcatcacc cctttgacgg tattacgtta acggaatttg atgttgccac aatgaaactc
     5101 aaacctgaaa cccagcgtac gatttttgaa ggtacagaag tgaaattggt ggaaggtcca
     5161 catatttata aaattaatgg cgaatattat ctgtttgcgg cggaaggcgg cacagtattt
     5221 acgcatcaag aagtagtggc tcgttctaaa acattggagg ctcactcttt ccaactggct
     5281 ccaaatacac cgtttattac taattttgat acacctaatt cttacctaca aaaacaaggg
     5341 cacggttcat tagttgatac cccaagtggt gaatggtatt acgcttccct cacagcaaga
     5401 ccttggaatc atgcaacaga atccgcaacc gatcctcgtg gttggtcaac attagggcgt
     5461 gaagccgcca ttcaaaaagt agaatttgat caagacggct ggccttatat tgtgggtgga
     5521 cacggtggaa aaacctttgt agaagcccca aaagatgcaa tttttaccga agctcctatt
     5581 gatcattctc aacacgatga gtttgatagc tcaacgttag atattaactg gaacacttaa
     5641 gagtgccttt tagtaaagag atgggcgaag ttggtaatgg tgttttaaaa ttgattgggc
     5701 gaggctctct tgcaaataca cacgatttat cgctaatcgc acgccgttgg caagccttct
     5761 attttgatgc ggaaaccaaa gtgaaattta caccgttttc ttatcaatct atggcaggtt
     5821 taactaacta ttacaatcac tcacactggt cttggatttt catcaccaaa aatgatcaag
     5881 gacaacaggt gattgaagtt gcagaaaata aaggtggact cagaaatggg caatatactt
     5941 cttaccttaa agataaagca attgtcattc ctgatggaac ggagtatgtt tggtttaaga
     6001 ctaaagttcg gaaagaaact taccgttatg aatattcatt cgatggcaaa caatggcaca
     6061 ctattccggt tgaattagat gcggcagtgc tttcagatga ttatgtgtta cgcagttatg
     6121 gcggtttctt cacaggagct tttgtcgggc tggctgcagt ggattactcc agttatgaat
     6181 ctacagcaga atttagctac tttgactata aagagttagg cgataagcaa cttacagacg
     6241 gctcattctc ttgggaaaaa tctgaaagtt gctttggcta aaatgaggag aatatcacaa
     6301 tgaaacaacg cagatttggt aaaaccaaca aaatggtgtc agaaattggg ttaggcactt
     6361 ggcagcttgg gacgaaatgg ggtgaaccgt tcaatcatca agaggcgatg gcaattttag
     6421 aaaccgctta tgagcaaggc atcaatttta ttgataccgc tgatgtgtat aacaacgggc
     6481 aaagcgagaa agccattggt gatattttga aaaaataccc tgactttttc tatgtcgtta
     6541 ccaaatgtgg acgtgcgtta aacccgcata ctgctgaaat gtacacgcca caggcaatcg
     6601 aaaaatttgt tgatggtagt ttaagccatc ttggcacgga aaagttggat atgattttgc
     6661 tccactgccc gccaacgttg gtttatcgca atgatgagat ttttacgaaa ttggaacagc
     6721 ttaaagccgg cggaaaatta atagactacg gtgtgagtat cgaaacggta gaggaaggct
     6781 tgttggcaat ggagtatgac attgcggcaa tggaagttat cttcaatatg ttccgcttaa
     6841 aaccattgga gcaactcttc ccaaccgctc agcaaaaaaa tgtgggtatt atcgcccgtg
     6901 tactgttggc aagtggtttg cttacaggca gatataatgc ctgcacccaa tttggcaaag
     6961 acgaccaccg cacatttaac cgcaatggtg aagccttcga taaaggcgaa accttttcgg
     7021 gtgtggatta tcaactcggt ttacaagcgg tggaagaatt gaaagcccta ttcggcacgg
     7081 aagatttaat tccttacgcc ctacgttggg tattgatgaa tgaagctgtg agtacagtaa
     7141 tcccgggagc aagtaaggtt tcacaagtaa ttactaacgc agcggtggat aatttccctc
     7201 cactcactga aaatgaaatg caaaaagtgg aagatattta caaccgctta attcgcccaa
     7261 gtgtgcatca tttgtggtaa tttatccaac gctataaaaa atggaactct aacttgagtt
     7321 ccatttttgt caattttagc cttaaacctc taactgttta gaggttttct taaacagagt
     7381 caatgcaata aacgcaaagg ctaagaaaca ggaaaggatc agggcataga aaccaccgtc
     7441 ccagccgaac atatcaacca gtttacccat cacataacct gcacttgcag agcctaacaa
     7501 gtagccgaat aaaccggtta aacctgttgc tgtaccggtg gcaacacgag gcactaaatc
     7561 cgctgcttgt aaaccgatca tcatcaccgg cccgtagatt aagaaaccaa tcgccactaa
     7621 gcagatgttg tcgattaacg ggttgccggc tgggtttttc cagtacacca caatcgcaat
     7681 taacacacca gcaaggaata acaacatcgg cggcgcacgg tgacctttga atactttgtc
     7741 gcttaaataa ccgcttgcaa gcataccgaa gataccggca tattcataca agaagtacgc
     7801 ccagctctgt ttatccacag agaaatgttt cacttctttt aagtaagtcg gtgcccagtc
     7861 gataatgccg tagcgaatga aatagacaaa cacgttggca atcgcaattg cccacaggaa
     7921 tttgttgttt aaaatatatt tgtagaaaat gtctttggaa gagagtgtgt gggcagactc
     7981 cactttttcc accactttct cgcctttgta ctcatcaatc ggcggtaagc cttgagattc
     8041 cggcgtatca cgcatcaaat agaacatcac aaacgccagt acaatcgcaa tcaacgccgg
     8101 cagatagaac agggattgcc acacgccaaa aatagataag cctaaaatcg ccaacggccc
     8161 gattaaaccg ccgcccaagt tgtgcgacac gttccaccag ctccaccaca cgccacgttc
     8221 agaggttgag aaccagttgg tcatcgtttt cgcccccggc ggatagccca ttccttggaa
     8281 ccagccgttt aacgccgcca aaatgatcat aattggaata gacgaaagca cgcccggtac
     8341 taaaccgaac accagactca caatcgctga accgagcaag ccgatagtga taaagtattt
     8401 cgggttagaa cggtcggaaa cgttacccat aataaattta ctgaagccgt aagcgagtga
     8461 taatgccacg cccaccgtac ctaagtctgc tttggtgaag ccatattcat caatcaaata
     8521 cggcattgcc aacgagaagt ttttacgaat taaataatat gccgcatagc cgataaagac
     8581 gcctgcaaac acttgccaac gtaatttgcg atattccgca tcaactctgc tggcttccac
     8641 tttttgttct gctggtggag aggcttttag aaaggaaaac attttactac tcctttaaga
     8701 atgaaatcct atggctacta taatctttca tttggagcag aaaaagtgga tttttgaaaa
     8761 tttgtgagca agattaaaat tattttgagc gaaaacgaaa atcggttaaa tttccttctt
     8821 tttttgcaaa aaatttgaga aatctaaccg cttgtttcac ttaaaaatca gctatttctg
     8881 ctttttcaaa aattccacgc ccgtatcagg gaagtcagta aagacgcctg ttgcacccgc
     8941 tttattcagc agggcatcgt acatttcatc gacattttgg aaaaagtccg gcagagcatc
     9001 tttgcgcacg gtgtatgggt gaagttccat tttgtacttc gccaactctt tcactaatgg
     9061 cgtgtaaaca atgttgccga ctttagattt ttctttatcc accaacatat accagcccgg
     9121 gccgacacca tcggcatatt ttgccacttc tgccatcgca ccgtctttga acatccagtc
     9181 gtagtcgtaa ttaacccagt tgccgttttt atctttctct tcggtttcgt gccaatcggt
     9241 gtaggcaact aactgcacca attttacgtc catacccagt ttcggtagta attcggtttt
     9301 gatccgtttc agctcgttga aatcgaaggt ttgcaggtaa attggtgagg ttttgctgtc
     9361 gtagccatat tttttcaaca ctttcagggt ttcgagtgca atgtctttac cctctttatg
     9421 gtgcaaccaa ggggctttaa tttcaggata gatcccaatt tttttgccgg ttgatttctc
     9481 taatccttga ataaattcca gctcttcttc caaagtgtga atggtgaaat gggactgcca
     9541 catcgggaag cggttcgggt aaacttgtgc ctgcttgccg tctttcacct caaaattctc
     9601 ggtcatttca agggttttaa tctcatcaag ggtgaaatcc accacataat aacgaccgtc
     9661 tgctcgttta cgctcaggga attttttcgc cacatcagtt aaaccgtcta aaaagtggtc
     9721 gtgaatcaca atcaggcggt tatctttggt catagcaaga tcttgctcta aatagtccgc
     9781 ttgttgcccg aatgctagag ctttagattc aagcgtatgc tcaggtaaat aaccgcttgc
     9841 accacggtgg gcaatcacta atttatcaga ttgttgtgca taggcaccca atgctgtcgc
     9901 ggacaatgct aatgcagcaa ccaatgtttt gaatttaaat ttcatagaat tacctcatat
     9961 aatgtaaaaa taaaaggaag aacaaaaatg tccttccttt tgataagtta tttattattt
    10021 accatagtga tcttctaatt ttgctttgtg cttgccttct tcaaccatca caatgaaggt
    10081 taagagaatg gctaatacac caccaccgat catcacgtag aaaccgccgt cccagccaaa
    10141 tttatctgct gcccagccaa ctactgcaga ggctgccact gtaccaccta agtaaccgaa
    10201 taaaccggtg aaacctgctg ctgtacctgc tgcttttttc ggtgcaagtt caagggcgtg
    10261 taagccaatc aacattaccg ggccgtagat taagaaaccg atagtggtca tccaaatgaa
    10321 gtccattaat tgatatgggt tttcatacca agcatggcct gcatattgtg caatttcaga
    10381 ttccggtgtc gcagggttga gccagaacgc aaccactgct gcggtggtaa gaatcataaa
    10441 gatgaaaccg gttaaaccac gtttgccttt gaacagtttg tcagagaccc aaccacagag
    10501 taatgtacct ggaatcgcag ctaattcata aatggtatat gcccatgctg tacctttaat
    10561 gttgaagtgt tttacttcgc ctaagtacac cggcgaccat ttcaatacgc catagcggat
    10621 taagtaaacg aagacattcg caatggcaat gtaccataac agtttgtttt tcagcacata
    10681 agtcacgaaa atctctttgg tgcttaaatc gtgttcatag gttttttcgt tatagtcgtc
    10741 agggtagtcg ttacgccatt tttcaactgg cggtaaaccg caagattgtg gagtatcttt
    10801 catcacaagg tagattggaa tagctgcgat cattgctgca attcccggga aataaagggc
    10861 ttgttgccat acatcttttg ccgttgcttc tacaccatac tcactgaaat agagcgcact
    10921 tgctaatagc accatcgccc ccggcaccat accgcctaag ttgtgagcgg tattccagat
    10981 agaaacgata gtaccacgct cagatttaga ccaccagtga accattgttc gtccacacgg
    11041 tggccaaccc ataccttgaa accagccgtt taagaagatc attacccaca ttactaaaat
    11101 gcttgatgtt gcccaaggca ttaagcccat aagggtcata catagacctg aaagtaacaa
    11161 tccggtcggt aaaaatactt tcgggttaga gcggtcggac attcctgcca tcacgaattt
    11221 tgataaaccg taggccaggc cggcagctgt accaatcaca ccgagatcgg tttttgtata
    11281 cataccagct tcaatcaagc ctttttgtgc taagtcgaag tttgcacgca caaaatagta
    11341 agcggcatag ccgaagaaaa ttcctgcaaa cacttgccaa cgcaagaatt tatatcttgc
    11401 atcgactttg tccgccggta attccgcaat gtgcggagcg ggtttaaatg gaccaaacat
    11461 agtattctcc aatattactt agtaaaacct ctgagtaatt cctttttagg aaattaggga
    11521 agcaataata aatgaaaata
//
LOCUS       DANLUT010000074        11413 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLUT010000074 DANLUT010000000
VERSION     DANLUT010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11413
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            27..2165
                     /locus_tag="PXB38_001484"
                     /pseudo
     CDS             27..2165
                     /locus_tag="PXB38_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694042.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2236..3924
                     /locus_tag="PXB38_001485"
     CDS             2236..3924
                     /locus_tag="PXB38_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5353800.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAANVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDWTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHSIGAYVLHPTIRLPDFRLNT
                     KVSFNHQGLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            3936..6758
                     /locus_tag="PXB38_001486"
     CDS             3936..6758
                     /locus_tag="PXB38_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL5353801.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTTKDKFSRKLAKEGKILNQGKI
                     TAKGERAFVVLVGDDVANEGEINAENYYKKETKRVRECYNDPWSWGQQCYDIDKEIVK
                     STSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNEGAIIANGDITFTAKGRNQA
                     LDSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYDGPKENI
                     KVVSKTGSKVTAPVIDFKGKTVNIQGSFGREDRTEHYNDELKTLRTVVNIEVPNTEDI
                     RIADTDNGGSGSFIQAGALGSLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFIN
                     QADINIHNADIHSNGRLFMLTNLPNDTDFQSNIRITDSKINLGNGAMGFGRSAKRWEM
                     HDVVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGN
                     SRVFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDEIDLNWEYNQRFDGFAAKH
                     NHRAPIAGTEINIANSDIGLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRL
                     GLNGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTD
                     SNVKIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNA
                     TAIVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPD
                     KLTPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDE
                     QNKCEERMLGNKNTNAKVIVGDIKFE"
     gene            6881..7012
                     /locus_tag="PXB38_001487"
                     /pseudo
     CDS             6881..7012
                     /locus_tag="PXB38_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(7067..7828)
                     /locus_tag="PXB38_001488"
     CDS             complement(7067..7828)
                     /locus_tag="PXB38_001488"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL5353802.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTAQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNKLVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(7840..8871)
                     /gene="murB"
                     /locus_tag="PXB38_001489"
     CDS             complement(7840..8871)
                     /gene="murB"
                     /locus_tag="PXB38_001489"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL5353803.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVAGSAPIQNIGAYGVEFEQLCDFVEVLNLRSGERFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPKQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQTKFPTIPHYPQANGSVKLAAGWLIDQTGLK
                     GLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVREKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(8975..9649)
                     /gene="crp"
                     /locus_tag="PXB38_001490"
     CDS             complement(8975..9649)
                     /gene="crp"
                     /locus_tag="PXB38_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL5353804.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKDPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIMKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(9711..9929)
                     /locus_tag="PXB38_001491"
     CDS             complement(9711..9929)
                     /locus_tag="PXB38_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL5353805.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(9932..10537)
                     /gene="slmA"
                     /locus_tag="PXB38_001492"
     CDS             complement(9932..10537)
                     /gene="slmA"
                     /locus_tag="PXB38_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL5353806.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAT
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(10549..11004)
                     /gene="dut"
                     /locus_tag="PXB38_001493"
     CDS             complement(10549..11004)
                     /gene="dut"
                     /locus_tag="PXB38_001493"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL5353807.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLIGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
     gene            complement(11038..>11413)
                     /locus_tag="PXB38_001494"
     CDS             complement(11038..>11413)
                     /locus_tag="PXB38_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5353808.1"
                     /translation="FYLNAKHFSKQPFIQLTERFKENLPFGDQDILNYCFQYNWIELD
                     RKYNYQTEHLLDDIAQQKISPNYIPHIIHFTGGIKPLEGKFNSSYVENVASLFRFYHN
                     TSWEILTELPLGTIQLKPFITE"
BASE COUNT         3395 a         2477 c         2518 g         3023 t
ORIGIN      
        1 ccttatacct aaaaagagga gtaaaaatgc aactttctaa actatccctt gcgattactg
       61 ttagtttatt ctctgcaaat atttttgcaa atcaatccat agaattagat accgtcaacg
      121 tcattgccac ccgtgatcca agtaaatttg ctgatacgcc acaaaaacaa actaaagatg
      181 cacttttggt aaaacaagcg acgagtgtgg cggtggcatt aaaagcgttg ccgaatgtgg
      241 atgtgcaagg aggggcccgt gcgattgcgt agaagccgtc tattcgtggg ttgagcgata
      301 atcgtgttgt gcaggtgatt gacggagtgc gtcagaattt tgatttggct caccgtggtt
      361 cttattttgt gccgatgtca ttgattcaag aaattgaagt aatcaaaggc ccaagcagtt
      421 cgttgtgggg gagcggtgcc ttaggtggtg tggtggcaat gcgcacaccg aatgcgttgg
      481 atttattgaa aaataatgac aaattcgggg caaaaatccg tcaaggttat caaacggcga
      541 ataatctttc cgaaaccgaa gcctcggtgt ttgcagcaaa tgatcggttt gatgccttgc
      601 tgagtggttt ctacaataat gctgacaatt tgcgtagtgg tgaaggcagg gagctgaata
      661 acaccggcta taagcaagcc ggtggcttgg taaaattcgg ttggcaactg aatgaggcaa
      721 accgtgtgga gctttcacac cgtgagagcc aatttaagca aacagcacca agtaacaatg
      781 atgtcgaaaa tcaatttacc actgcagaca tcaacgccaa aattgcggcg tggcacgcag
      841 ccaatccgcc ttcaacaccg aatttctttg cgaaattagc ggcattttat ggcggtttgg
      901 gcgcacaatt tggtagcgtg agttatttga gcgatcaaaa aattaacgat aaaagcaccg
      961 cacttaacta ctatttcaac ccgagcaatc cttatgtcaa tgcgcaagtg acagtctatc
     1021 aaaacagcac cacggaaaaa gagcaacgta aagtgagtgg tgtggaagat cgaaccaaat
     1081 taaccacgcg cggcatcaat ctgcgtaacc attccgaatt gccttggttc tcgttggtct
     1141 atggtgtgga ttatatgcag gataaagccg acaccgagcg tggcacaaac aatagtgatg
     1201 cccgctatcg ttctaatccg tatcaagcaa aatccaatac gacaggtgca tatttaatcg
     1261 cccatattcc gctttggggc gaaaaactgc tgttctcgcc gagtgtacgt tatgaccgtt
     1321 tcaacacctc aagcgaggcg gtgaaatacc aagacagcca ttggtcgccg gcggcaaaat
     1381 tgacatggaa agcgacaact tggttagatt ttaccgcaaa atataatgaa gccttccgtg
     1441 cgccttcaat gcaagagcgt tttacaggcg gttcgcactt tggtactcaa ggacagggcg
     1501 gtgcaccgat tatcaatatt tttgtacaaa acccgaattt acgtcctgaa actgcgaaaa
     1561 ataaagagat cactgcccat gtgcattttg atgatctgat cacacaaggg gataaattca
     1621 gcgttgaagc cacttatttc cgtaacgatg tgagggattt catcaatctt caactttaca
     1681 aagccaatcc ggcaagcccg atggaagtga ttccaacccg ttcgcaatat cgcaatgtaa
     1741 ccaacgcacg attaagcggt gtggagttac aaacccaata tcaaaccgag cgtgttacgt
     1801 tcttggcaaa ctacggctca accaaaggta aagataaaga cagcggagaa gccttgtcga
     1861 acattgctgc aagcaaaatc ggctttgggg tcaattatgc cgtggtgcaa gacaaattca
     1921 cggtgggggc aaacgtaacc cgttatcaag cacaacatcg tgtgccgaaa aaccacggtg
     1981 tgacttacca aggctatacg ctgaccgatc tacacgccac ttacgcccca ttaaaaggcg
     2041 aatggaaaaa cctgcgttta gacttggcgg ttgaaaacct attcgataaa aaataccaac
     2101 cggcattcag cttaatggaa ggcagcggtc gtaatgtgaa actcagtgcg gcttacagct
     2161 tctaatgtct ttaacggaag acggcacaag cggtcgtttt ccggttattt tttgcaatat
     2221 taaaagggag ttactatgaa attttatccg tcgctgatcg caagtgcggt cagttttgcc
     2281 gttgttttga gtggacaagc ggcagcgaat gtgccggatg ccggctcgtt acagcgtgaa
     2341 ttagaccaac gtcaagctca acaaaaagtc aaaccgagtg gcgaatggtt taatcaagcg
     2401 gcaaaagcac cttataccgc aacggacggt caagaactga catttccatt aactcaggta
     2461 caagtttttg attggaccaa ccaagaaatc tctaccccgg aattagcccc gattttggca
     2521 aactatgtgg gtaaagcggt ttcgctgacc gatttaagca acttggcaaa tgagatcacc
     2581 gagttttatc gcagccacaa ttatctggtg gcaaaagcca ttttaccgcc acaggaaatt
     2641 gaacaaggta aggtgaaaat cctgttgttt aaaggcaatg tcggtgaagt gcggttacaa
     2701 aatcagagtg ctttaagcga taaatttgtt gcacgccttg ccaacaccac agtgaatggt
     2761 tcggaattta tcctaaaaga cgagctggaa aaatttgccc tcacgatgaa tgatgttccc
     2821 ggggtgaata ccggcttgga gctttctgcc ggtaagcaag caggcgaggc gaatttgctg
     2881 attaagctcc aaaatgccga gcgtttctca ggctatgtat cggcagataa ccaaggcaat
     2941 aaaaataccg gacgttaccg tttagccaca gggataaaag ccaataatct gataggttgg
     3001 ggcgatgagt tgaaagtgga tttgatgagt tccaacaacg ctaatttaaa aaatgcgcgt
     3061 ttggattatt cgagcttgat tgacggctac gctacccgtt tgggcttaac ggcgaattat
     3121 ctcgactacg aattaggcgg taactttaaa gccctacaat cccaagggca tactcacagc
     3181 atcggggctt atgtgctgca cccgacaatc cgcttgccgg attttcggtt aaacaccaaa
     3241 gtcagcttta atcatcaagg tttaaccgac aaacaacaag cggtcaatgt ggcacaaaaa
     3301 cgccaagtaa acagcttaac ggtgggcatt aacgggtcgt ggaattcgct taaagacggc
     3361 acaagctatt tctctctgtc tgccttgttc ggcaatttag ctaaccacac caacgagcaa
     3421 gcgcattatg tggcaacaga ttttcagccc aaatcccgtt ttacggtcta tcaatacagc
     3481 ctgtctcacg aacaagcgct gccaaaatcc tttgccttca accttggcgt gaacgggcag
     3541 tttgcggata aaaccctcga cagctcacaa aaaatgttac tgggcggttt atacggcgtg
     3601 cgtggtcatc aagccggtgt cgcttcggtg gatgaggggc atttagtgca aaccgaactc
     3661 aagcattatt taccgctctt ttccaaaagc ctgctgacca gctcggtctt ctatgattat
     3721 ggttggggaa aatactataa acacagcgga tttttggcgc gtggtgtaaa caatagcgtg
     3781 aaattacaga gtatcggagc agggctttcg ctctctgaag caggcagtta tgccattaac
     3841 gccagtgttg ccaaaccgct gggtaaaaaa atcgagaatg cagataaaca ccaattctgg
     3901 ttctccgcca tcaaaacctt ttaaggagac aatttatgtt taaacgtaat gcaatttctc
     3961 tctgcatttt gaccgcttgc agcggtttag cctatgccaa tacagcagat ttgccgcaag
     4021 gtgaaagggt gcgtgtcggg acggcaacga ttgagcgcac aaccgataaa atgaccgtga
     4081 atcaatccag caataaagta caaattgatt ggaacagctt tgatattggt aagaataaag
     4141 aagtggaatt caaacagccg acagagatgg cggtggcata taaccgtgtt accggcggaa
     4201 acgccagcca aattcaaggc aagctgaccg caaacggcaa agtgtattta gccaacccga
     4261 acggtgtact catcaccaaa gatgcggaag tgaatgtggg cggtttgtta gtgaccacaa
     4321 aagatttaga aaaaatcagc gaaaacggca caacaaaaga taaattcagc cgcaaattag
     4381 cgaaagaagg caaaattctt aaccaaggta aaattactgc caaaggcgag cgggcttttg
     4441 tggtattggt gggcgacgat gtggctaatg aaggggaaat taacgccgaa aattactaca
     4501 aaaaagagac caaacgggtg agagaatgct ataacgaccc gtggagctgg gggcaacaat
     4561 gctacgatat tgataaagag atcgtaaaaa gcaccagtgg cgaagtgcat ttatcctccg
     4621 gagaaaatgt cacctttacc ttaagcgacc gctatattga tgtggcgtta gacgataata
     4681 cggtcaatag cattatcaaa aatgaaggtg ccattattgc caacggcgac attactttta
     4741 ccgccaaagg gcgaaatcaa gccttggaca gcttaattat caataatggc gtgttacaag
     4801 ccaataaggt gcaaaataaa aacggcacca tcattttatc tgccggtgaa acccaattac
     4861 acgaaaaaag ccagattaaa ggtgagaaag tgagctttgc cgaagcttcc tattacgacg
     4921 gcccgaaaga aaacatcaaa gtggtgtcca aaacaggctc aaaagtgacc gcacctgtga
     4981 tcgatttcaa aggcaaaacc gtgaatattc aaggcagttt tggtcgtgaa gacagaacag
     5041 agcattacaa tgatgaactc aagacattgc gtacagtggt aaatattgaa gtgccgaata
     5101 cggaagatat tcgcattgcc gataccgaca acggcggtag cggttccttt atacaagcgg
     5161 gtgctttagg ctcattactt gcaaataacg gtcgagtgaa tgtacagggc aaaggctttg
     5221 atgtctcagg caagttgaat gtgaatgcct ttaaacaaac ggattccgtg ctgaaattca
     5281 tcaatcaggc ggatatcaat atccacaacg cagatattca ctcaaacggg cgtttattta
     5341 tgctgactaa cctcccgaat gacacggatt tccaatcaaa tatccgcatt accgacagca
     5401 aaatcaacct aggaaacggt gcaatgggct ttggtcgcag tgcaaaacgt tgggaaatgc
     5461 acgatgtggt tcgacgtgcc gatacggaac tgcgtaaaaa attcaatctg gatatgaaaa
     5521 acgtggaatt aaaccaagtg gatgattttg tggtggcggg cggtttccaa caagttaatt
     5581 tggataacgt gaaagcccgt ggcaaaacca acttctatct ggattccggc aactcccgcg
     5641 tgtttgtcgg tgagcagatt tatgaatatg gcgtaaccga tattgaaaaa cgcacccaat
     5701 tggcgaattt agaccagcgt agaaaacgtt ggaattcgga taactatgat gagatcgatc
     5761 tcaactggga atacaaccaa cgttttgacg gctttgcagc aaaacacaat caccgcgcgc
     5821 cgattgccgg tacggaaatc aatattgcca atagtgatat cggcttagat aacggttttg
     5881 tgcatttaat ggcagaaaaa atcaatctgg acgacagcaa aatcaatatc accttcaacc
     5941 aagacaacag cttggatgaa agtacccaaa tcaaccgctt aggactaaac ggcaaagtgt
     6001 cgatgaaaaa cagccatatt aacgtagtgg gcgatgaaaa agacggtatc tcaccggctc
     6061 gccattatgc cacgatgttc ttagtggggg agctgcttgg tgaaaagagt tctattttcc
     6121 tcaaatccca ccaaggtgca gtattgagaa ccgacagcaa tgttaaaatt gccggtaaaa
     6181 acagcaaaga cgacctcaaa attaccgcca ttaccaccgg taaaaaaatg ggcaatgaaa
     6241 tcatcggacc ggacggcttg ccaacctcgg aagataacga tgccaacgcc agcaacaccg
     6301 cctttgccat cggctatgaa cctaacgcta cggctatcgt cgaaaatgca agcattaccg
     6361 cattagcacc aaacggcggc ttggcataca ccggcacgtc taaaacccaa attgacgcga
     6421 aggataatgc tacctttacc ttctttgaaa aacctcgagc cggctatgac aaattgcttg
     6481 gcgacatcaa aggtaacccc gataaattaa ccccacgcga tttcgcccgt ttatacgaca
     6541 acattaaagg catcaaagcc agcagcctat ccgaacaaca gcttggccta gcagacaccg
     6601 cgaagaaaac cagcgaacac accttagcaa acagcctaga cgtagaaaat ttggtttcag
     6661 tgacagtgtg tgatgagcag aataagtgtg aggagcgtat gttaggtaac aaaaatacca
     6721 atgctaaagt tattgtcgga gatatcaaat ttgagtagcg ttgaagaaag tggtagaagc
     6781 tcagacttga tctgataaag cactctaaaa agtgagagtt tcccgtttag aatatgagtg
     6841 tcaaaattca atctaaacaa aaaggaaact ctcatgtttt attacttaca atcccctcat
     6901 taaacacaag accggtttat taaatttagc agaagaaccg ggcaatatct ctcaagcctg
     6961 caatgtggtg ggtatgagcc tagatacatt ctattgctat caacaagcgg ttatttttgg
     7021 caactaattt gcaaaaaaac aataaaatcc gaccgcttgt agagggttaa tccgccctta
     7081 gtgaaatttc accgatgccg aaatagcgga ggttgtcgcc ctgttttaga atgagttcgc
     7141 cctgctcgtt aatgccttgc gaaatgccgt ggatttcttc ggcttcggta atgagcttaa
     7201 ccgctttatg gcggaaaagg tcgaaacttt gccagcgttc ggcataatga gcgaagccga
     7261 caagcggata aattttgaga tttttttgca attcataggc taaacggcaa accaatttgt
     7321 tgcggttgaa atgatattgc gataaatctg cccacgcttg cgtcacaata ttttcatcca
     7381 cttttgccat tcctaggttc agcccaatgc cgataaccac atctaaacca ttgcgattgg
     7441 cttgggtttc caacaaaatg ccccccattt ttttgccttg gtaataaatg tcattcggcc
     7501 atttaatttg aatatctttt acattttgag cagtaaggct ttccgcaatg atcaaggcta
     7561 ccactaaact taagggcggt aaatctgccg cctgctccat cgggtaatgc cataaaatcg
     7621 agaaatagag attttcactc tcgggcgaat accaagttcg acctcgtctg ccacgtccgg
     7681 cagtttgttt ttcagcgagg caaaccgtgc cgttttccaa acgttggtga tgagtgagca
     7741 aatattcatt ggttgaatca atttcatcga acacaacggc ttgcccgcaa attaacgcat
     7801 tttggatttg agcttggtta agtttcatta tgtccccact tagcgagtga ttttttcgct
     7861 atcgacctcg ccgttcttgc cgataaaacg cacttcaggc tgaatttcta ccccaaattt
     7921 ttctctcact ctctggcgaa cggttttggc taacgccaaa acatcttgcc ctgttgcatt
     7981 ttctttgtta atcagcacta aggcttgctg ggtatgtacc gccgctccgc caatttgtaa
     8041 gcctttcagc ccggtttggt caatcaacca acctgcggct aattttaccg aaccattagc
     8101 ttgaggatag tgaggaatgg ttgggaattt ggtttgtatt ggtgcaaatt gttcgtttga
     8161 aatcaccgga tttttaaaaa agctgccggc attgccaaat tcatcagggt taggcaattt
     8221 tgaggagcga accgcacaaa cttcatcaaa aatctgtttt ggcgtaacgg tttccggatt
     8281 gagttgggct aatgatccgt aacttagcac cggtttccac gctttggcta gctttaagcc
     8341 taccgagata atcgcaaatt catcacggta ttggtgttta aacacacttt cacggtagcc
     8401 aaattcgcac tcggatttgg atagcttaaa gcgttcgccg gaacgtaaat ttaacacttc
     8461 cacgaaatca cacagctgtt caaattccac cccgtaagcc ccaatatttt gaattggagc
     8521 agagccggcg acacccggaa ttaacgccag attttcaatg ccggcaatat tgtgtgccaa
     8581 cgtccattta accaattcgt gccagttttc cccaccttga acgtgcaaat agtggaaatg
     8641 ttcgtcttcg tggtgcgtaa tccctttgag tttatttact aacaccacac cgtcaaaatc
     8701 ctctaaaaac aaaacgttag agccttgccc gagaatcaag attggcagtt gagcgttaaa
     8761 ggctttttgc cattcgctca atagctgttc gactgtggta aattcaataa tttgggtcgc
     8821 ttttgcaggc aaatggaaag tgtgaaaagg ggttaagcta tgtttcatca tcaaattagt
     8881 tagttaagaa gtggaaataa caagcggtga tatttttaca aaattttgca attaagattt
     8941 tgggcaggca caggatctgc ccctacattc agaattacct tgccccatat accacaatgg
     9001 ttttgccgtg agcagaaatt aagccttcgt cttccaacat tttcataatg cgtccaacgg
     9061 tttcacggga acaaccgacc atttgcccga tttcttggcg ggtaattttg atctgcatac
     9121 cttccgggtg agtcattgca tccggcattt tagctaagtt gagcaaggtt tgagcaatgc
     9181 gaccggcaac gtctaaaaag gcaagattac cgacttggcg tgaagtttga cgtaaacggc
     9241 gagccatttg tgccgataaa tacattaaaa tatcggggtt taaatggact agttgtttga
     9301 attttttata ggaaatttcc gcaatttcac aaggatcttt agtgcggacg taagcggtac
     9361 gttgttggac tttttcttca aataaactta attcaccgac aaactcacct gtgcctaagt
     9421 tagttaagag catctctttg gtttcatcat ctttgatgta aaccgacact gagccattca
     9481 cgatgtagaa aagtgattct gcatcttcac cggcgtgaat gagtgtatat ttcgccggat
     9541 aacgatggat atgacaatgg gttaaaaacc actccaccgc agggtcgtga atagagggcg
     9601 gaggagttac attttccaga ggagctgttg aaagtgtcat atcttgcata gtatttccta
     9661 taactcttat actaggttaa atttttagaa ttttaacacg aaattaaagg ttagcctaaa
     9721 aaagattttt tgtctttaat atcaaggctt tcgtgtaatt ccgaccaaac aatcaccact
     9781 ttatctgcct taagttgtgt gagtaatcgt tctctttttt ctgccagaga aagttccctt
     9841 tccccgtagt ctgtgccttc tcgtaaaatg aaggaatcta aaatattatg taaggttgat
     9901 tcttcgagtt cttgccaagg tataatcata attaatcaaa taaaggctta ataaatgccc
     9961 actgtttttc aaaatgttgg tgttggttat agctgaaatt agaacgaacc aagcgtaaaa
    10021 attgcccttc gcagaaattc actaaataac cggctaaggc tctttcgtct tcaaagctct
    10081 tgcgttcacg cagtttacta agttgcaaaa tattggcaaa ttgtaactcc aagttatcaa
    10141 agaattttgc cactcgagct ttgagcagct cctcttcaaa catcaaggcg tgtccggtca
    10201 ggatgcgggt aacgcccggg tttttgcgag caaattctaa aatcacatat aaaattgctc
    10261 gcaccgaatt ggcactgctg tcttggcgtt tattggcgtg aatatagctg gtgagggtct
    10321 gctcgatttt ctcgattaac gcttcaaaca tcttggtttt acttgggaaa tagcgataca
    10381 acgccccctc cgacaccccc accgcagtgg ctaaacgctc ggtagtgata cgctgcattc
    10441 cctcttcaga atttaacaag ctgattaaca cttccaacac ttgttggcgg cgttccacca
    10501 ctgatttttt cggcatttta attttaggtt ctgtcattgc caatcctatt attgcttacc
    10561 tgaatgccca aaaccgcctt cgccacggtc ggtctgctca aactcttgca caatgttaaa
    10621 acttgcctgc accaccggca caaagactaa ctgagcaata cggtcgccca cgttcacggt
    10681 aaaatcagct tggctacggt tccaaagcga cactttcagc tcgccttggt aatcgctatc
    10741 gatcaagccg attaagttgc ctagcacgat cccgttttta tgccctaaac ctgatcttgg
    10801 taagatcacc gccgccaaat tcggatcggc gatataaatt gaaatccccg ttgggatcaa
    10861 caccgtttca cccgctttta ccgtcagcgg ctcgttgagc atcgcccgta gatccaagcc
    10921 tgccgagcct tcggtcgcat acgcaggtaa tggaaattca ttgccgatac ggctatctaa
    10981 aatttttaaa tcaatttgtt tcattctttt tcctttttgt aaatttttaa aactatatta
    11041 ttcagttata aaaggtttta attgtatcgt tccaagtgga agttcagtca atatttccca
    11101 gcttgtgttg tggtaaaatc gaaataaact tgcaacgttt tcaacgtagc ttgaattaaa
    11161 tttaccttct aatggcttta ttcctccagt aaaatgaatt atatgtggaa tataatttgg
    11221 cgaaattttt tgctgggcaa tatcatctaa taaatgttct gtctgataat tatattttcg
    11281 atctaactca atccaattat attgaaagca gtaattaaga atatcttgat ccccaaatgg
    11341 taaattttct ttaaatctct cagtaagctg tataaatggt tgcttactaa aatgctttgc
    11401 atttagataa aat
//
LOCUS       DANLUT010000075        11361 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLUT010000075 DANLUT010000000
VERSION     DANLUT010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11361
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            170..1965
                     /locus_tag="PXB38_001495"
                     /pseudo
     CDS             170..1965
                     /locus_tag="PXB38_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
     gene            2045..3106
                     /locus_tag="PXB38_001496"
     CDS             2045..3106
                     /locus_tag="PXB38_001496"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5353809.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3094..3558
                     /locus_tag="PXB38_001497"
     CDS             3094..3558
                     /locus_tag="PXB38_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5353810.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3589..3705
                     /locus_tag="PXB38_001498"
     CDS             3589..3705
                     /locus_tag="PXB38_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL5353811.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3721..4188
                     /locus_tag="PXB38_001499"
     CDS             3721..4188
                     /locus_tag="PXB38_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5353812.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4243..4923
                     /locus_tag="PXB38_001500"
     CDS             4243..4923
                     /locus_tag="PXB38_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL5353813.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRALHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4991..6133)
                     /locus_tag="PXB38_001501"
     CDS             complement(4991..6133)
                     /locus_tag="PXB38_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL5353814.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATAEM
                     VKTLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISASQE"
     gene            complement(6143..7522)
                     /locus_tag="PXB38_001502"
     CDS             complement(6143..7522)
                     /locus_tag="PXB38_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5353815.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSLAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAISAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7644..8738)
                     /locus_tag="PXB38_001503"
     CDS             complement(7644..8738)
                     /locus_tag="PXB38_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5353816.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8842..9294)
                     /locus_tag="PXB38_001504"
     CDS             complement(8842..9294)
                     /locus_tag="PXB38_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL5353817.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIQATVAK"
     gene            complement(9315..10067)
                     /locus_tag="PXB38_001505"
     CDS             complement(9315..10067)
                     /locus_tag="PXB38_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL5353818.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10078..11262)
                     /locus_tag="PXB38_001506"
     CDS             complement(10078..11262)
                     /locus_tag="PXB38_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL5353819.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDACKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFCVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3279 a         2603 c         2363 g         3116 t
ORIGIN      
        1 ataaatatat ttttcttcct ccatgacgag attataaaaa taaaatgtga tctcgctcac
       61 aaataattaa aaataatctt ttttaatctt tttctagcgt ttatcattaa ttccgacaac
      121 ttctctgaag ttttttagtt ctattaatct ctcaacaaag aggcccccta tggacttttt
      181 aaccgaaatt ctccttttct taaaggatca agtgctgaat aaagcaccct tcttactagg
      241 tatcgtagct tgcttaggtt acattcttct taaaaaagac acttctacga ttattaaagg
      301 cacaattaaa acaattgtcg gttttatgat tgtacaagcc ggttcaggtt tcttagtaac
      361 caactttaag ccggttattg atggcttagc caaatatcac caacttaccg gtgcagtaat
      421 tgacccttac accagtatgc aatcgaccat tcaaaccatg ggcgagaact acgcttgggt
      481 tggttatgcc gtaattgggg cgctgttcct caatattcta ttagtggtgt tccgccgttt
      541 aaccggtatc cgtaccatta tgctcaccgg tcacattatg ttccaacaag caggcttggt
      601 tgcggtgttc tatatgatca tcggagcgtc aatgtgggag accattatct acacctcagt
      661 gttgatggct ctttattggg gtatttcgtc taatattatg tataaaccaa cccaagcggt
      721 aacaggcggt gcaggcttct caattggtca ccaacaacaa attgcttctt ggattgcagt
      781 caaactcgca ccaaaacttg gcgataaaga cgatactgta gataaaatga aattgcctaa
      841 ctggctcaat attttccacg acagtatttc tgcaaccgca ttagtaatga ccatcttttt
      901 tggaatcatc ttactttcat tcggtttaga taacctcaaa gaacttgctg gcaaaaccaa
      961 ctggtttatg tacattcttg aaatgggctt gaaatttgcg gtggcaattc aaatcattgt
     1021 aaccggcgta cgtatgtttg tagctgagct ttcagaagcc ttcaaaggta ttgctgaacg
     1081 cttaattcca aactcagtat tagcgattga ctgtgccgct atctacgctt tctcgccaaa
     1141 tgcgatggta ttcggcttta tgtggggggc tatcggtcaa tttgtggcag taggcggctt
     1201 gcttgcagta ggctcaccgg tgcttattat tccgggcttt atcccgatgt tcttctctaa
     1261 cgcaaccatt ggtgtgtttg caaaccaatt tggtggttga aagcagtaat gaaaatctgt
     1321 tttgtgatgg gtattattga agtgcttggc tcagcttggg ttattcaaat gcttgcttca
     1381 caaggcacaa cctttaacgg ttggatgggt atggctgact gggcattgtt cttcccacca
     1441 atcctacaag gtattatcag cattccgggc ttcttctttg taattgtggc agcagcaatg
     1501 gtttatatgt tcttcgcatc taaacaactt cgtgccgaag aagcagaagc ggcagctcgt
     1561 ggcattacac ttgaacaatt agacggctac ggcttagatg aagtaaaagc agaaccaaaa
     1621 gcggaggcag tagtgcaaca agcggtcgaa aatgccgaaa attctgcaaa cccaatccgc
     1681 attctagcgg tgtgtggctc tggtcaaggc tcatcaatga tgatgaaaat gaagatcaaa
     1741 ggctatctcg acaaacgtgg tattccgaat attatggatt cctgtgcgct aactgattac
     1801 aaaggcaaat taagcgaggt tgatattatt gtctccagca aacatttagc caacgaaatc
     1861 gaagtaccgg aaggcaaagc ggtattaggt gtacaaaata tgctaaatcc aaactcattt
     1921 ggtgatgaat tagttgagct aatcaatcag cataatgcaa aataagtaag tttaggggtg
     1981 aataatcacc cctatctatg ctaaagattg taaaaactca cttcatcaaa cgaggaatta
     2041 tccaatgaaa aaaatcttat ccaccctgtt tatgctctcc gcggttagcg ttgccgttgc
     2101 caaagaggta aacattaaac tacttggtac ctcagacgtt cacggacgtg ttgtgccgtg
     2161 gagctacggg gcagacgtgg aagacaaatc cggctcattc gcccaaattg caacctatgt
     2221 caaagaggtg cgtgccaacc acaaaaatgt gttgctgttt gatattggcg atgcgattca
     2281 agacaaccaa gtcgaagagt tcgctaaaac cttagacaaa gcgaaaaaca atcccgtgcc
     2341 gaaagtgctg aatgcaatga attacgacat cttcattctc ggcaaccacg aatttaactt
     2401 cggaatgccg aatttagatg cgattttaaa agacattaac gccaaaattc tcactgccaa
     2461 cttctatcac aaagacggca aacgctacgt tgagccaact accatcattg aacgtgatgg
     2521 cgtaaaactt gggattatcg gcttaaccac cccaatgtcg gctatttttg aaaaagacac
     2581 cggtcattta gacgcaatga agttcacttc gccgattgaa gaggcgaaag cccaaattgc
     2641 cgatctcaaa gccaaaggcg tggacgccat tattgtgctg gcacatatgg ggattgagaa
     2701 cgaaaacaac attcccgaca ccggcgtggc ggatttagtg aatgcagtgg acggtattga
     2761 tgtaattatc gccggccata tgcataaaga tgtgccgagt gaaactatca aaaataccct
     2821 gattaccgaa ccgcaccgct acggcacagt ggtttccgaa gttgatcttg cctttgatgt
     2881 gaatgacaaa ggcgaagtga aactactttc taaaaccgcc aaaaccgtac cggtgaagaa
     2941 actcgcaagc gatccggaaa tcgaaaaaat ttaccaaccg tatcacaatg aactgcgtgc
     3001 cttaaacaac gtcaaaatcg gtgaaactgc acaagattta atcccacaag gcaaaatcac
     3061 ggtgtatcga ttgctttctc gcaagacacc ggaatgtcct cattgatcca cgatgtgcaa
     3121 caacattaca gcggtgcaga cgtagtgagt tttgcatttg actacgaaac cgtgcgttta
     3181 gacaaaggcg acatcaagaa aaaagacatc atctacaact accgctatgc cggtggcgat
     3241 gtgagcatgt atgagctaac cggcaaacag cttaaacagt atatggaatg gtcagcggat
     3301 tacttcgaca ccattcaagc cggtgacaaa gactaccgct acaacgctgt gcggggtaaa
     3361 tctaaatacg ttaccttcga cctattcggc ggcgtaagct acaacatcga cctacgcaat
     3421 ccaagcggta gcaaaattgt cgatctaaaa ctggcaaacg gcagtctaat caccgatgac
     3481 ggcaaataca aagtgggaat gaactcctac cgctttggtc agctcaccaa aaaaggcggc
     3541 atctgggaag gacagtaaat ccccgtgatt tgggaatcca aagtcgccat gggggctgaa
     3601 aaaggcacaa tccaaaatat gctgattgat tacatcacca acgtcaaagg cggaaaaatc
     3661 gaaggcaaat cgcataaccg ctgggcgatt atcggcttaa attaacgaaa gggaaacact
     3721 atgaacttaa aacaatctct tattgaaaat aactctattt tgctcaatca atcagcggcg
     3781 aattgggaag acgcaatcaa aatcggcact gatttattag tcaaagccgg tacgattgaa
     3841 ccacgctatt acgataatat tgtaagcaaa atcaaagaga tggggcctta tattattctt
     3901 gcaccgggct tggcaatgcc tcacgcccgt ccggaagaag gtgtgattaa aacctctttc
     3961 gctttagtga cttttgacac cccgatttat tttgagggcg aagatgagcc ggttcacgtt
     4021 atgctaaccc ttgcagggag tgactctgat cagcatatgc aaggcttggt agaaatcacc
     4081 caagtgctag atgacccaga gagcgacaca ggtgttgatt tagataaaat ccgccgctgt
     4141 aaaacggctg aagaagtgta tgcagtaatc gatcaggcat tagcctaata ttctacaagc
     4201 ggttcaaaaa catcaatatt ttgcaaatag aggaatacaa ttatgtccaa accattatta
     4261 caaattgccc ttgattctct ttcactggaa aaagcggtgg cggatgcaaa acaagcagaa
     4321 aaccaagtcg aaattattga atgcggtact attcttgctt ttgctgaggg tatgaaagcc
     4381 gtttccacct tgcgtgcatt gcacccaaat cacattattg tgtgcgactt aaaaaccacc
     4441 gatggcggtg caattttagc taaaatggca tttgaagccg gtgccgactg gctcacggtt
     4501 tcggctgcgg ctcaccctgc aaccaaagcg gcttgcaaaa aagtggcgga cgaatttaac
     4561 gctgctcacc cggagctaaa agtgaaaaaa gagattcaaa ttgaaatcta cggcaactgg
     4621 acggtggaaa aagatgccaa agagtgggta gaattagggg taacccaagc gatttaccac
     4681 cgctcccgtg atgcggaact agcaggtaaa ggttggacaa cggaagatgt tgagttaatg
     4741 aaacagcttt ctgacttagg cattgaatta tctatcaccg gcggtatcgt accggaagat
     4801 attcacctgt tcaaagagat caaaaacgcc aaagccttta ttgcaggccg tgctttagtc
     4861 ggtgaaaaag gcaaacaaac tgccgaagcc attcgtgtgg agattgataa atactggaac
     4921 taatccggca ttgaaaccca ataaaaatgg cgttctctca accggaacgc cattttttat
     4981 ctcatttttt ctattcttgc gaggccgata ttttccacaa tctcgctaca ttttcggcag
     5041 ttgaaatcag gttctctttg cctgatttta acaccgcttc taaattgctg acctgtcgaa
     5101 taatcggaaa taccgcatca atgccgtgtt ggtacaccac agggtaatct tctttcaatg
     5161 agccaactat cgcaatcacc ggcttgccaa actgcttagc gactttcgcc accccaatcg
     5221 gggttttacc ggcgatagat tgagcgtcca ttcgcccttc ccctgtcacc accaaatccg
     5281 catcggcaag tttctcagca agatcggttg cctcaagaat aatttgcacg ccggaacgta
     5341 atgttacgtt aggcagtagc agtaaaccac cgcccattcc accggctgca ccggcaccgg
     5401 ctttctcggc aatctcaatg cctaattggg attttacggt ttcggcaaaa tgcaacagag
     5461 cgtggtcgag cgttttcacc atctctgctg tggctccttt ctgtggccca aaaattgccg
     5521 aagcccctcg ctcgccacac agcggattat ctacatcgca agcaacctca aattccactt
     5581 gctttaagcg tgaatccaaa ccgcttaaat caatctgctg aatttggctt aatgcctcgc
     5641 caccaaagcc gatttcccgc tgttcggcat ttagaaattt cgctcctaag gcttgtagca
     5701 ttccgacacc gccatcgtta gtcgcactgc cgccaatgcc gagaatgatt ttttccaccc
     5761 ctaaatctaa ggcggcttta attaactgcc ccgtgccgta gctggtggta accagcggat
     5821 ttcgttgctc cattggcact aaatgcaagc cacttgccgc cgccatttca ataaaggcgg
     5881 ttttttgatc ccccgacaag ccaaaaaagc cctccacctc atttgcaagc ggtgcaatta
     5941 cgctgatttt ttgcaaactg ccgtgagtgg catcaaccag cgactgtacc gagccttcgc
     6001 caccgtctgc catcggtacg agctgatact ccgcctcagg gaaaacacgg gcaaaaccct
     6061 gttgaattgc ttgagccact tctaatgcgg tcaaactctc tttaaatgaa tccggtgcaa
     6121 tcacaatttt catcgtcaat ccttagagta aaatcaatga aagcagataa accgtgagca
     6181 tacccaccac acccataatg aaagttaggg tagtttgcgt acgatagcct tgttgcggag
     6241 tcagtttagt aaagtttgtt accacccagt agtagctgtc attggcgtgg gaaacgcaca
     6301 ttgagccagc cgaaatcgcc attacggtta aggctgccgc catttcactg gttagcccta
     6361 aggcgttcat taatgagtcc ggtgcgttga acattcccat aatggaggcg gtggtgataa
     6421 ttgccaccgt tgagctgcct tgtgcggttt ttaaaattgc cgaaatcagg aacgggaaga
     6481 aaatccctgc tgtactgata atatgagcgt tttgcttgat gtaatccaca aagccggctt
     6541 gagtaatcac gttacctagc acaccaccgg cggcggtaat aaagagaatt gggccgacta
     6601 atttcagggt atcattggtt aagctgtcaa attccgccat tttaccgctt gaaaccagta
     6661 ggaaaatagc gaagatcacc ccaattgcta acgcaataat cgggttgccg acaaattgta
     6721 ggaatacgcc gaaatcgcca cttacaccgg caattttggc aatcgagccg atagccatta
     6781 agataatcgg cataaaaatc ggggcaaggc ttaaaaaccc acttggtaat ttgccgtatt
     6841 gtttgatcag atcttcatag ctttggctga ttacttgatc cgcttgagct tcttccatca
     6901 cgctgacttg tttgccaaca tatttggcaa agaagtaact ggcaatcaac acaggaatcg
     6961 aaaccacaaa gcccattccg atcacaagca ggagattatg gcttaaacca acagcaccgg
     7021 ctgctgcaat cgggcccggt gtcggaggaa taaagacgtg ggaggcatat aaaccggcac
     7081 ttaacgccac cgccattccc accggattgg caagaatttt tttgcgaata gcttcacgaa
     7141 tcgggtttaa caccacaaag ccgctatcac agaacactgg gataccaacc acccagccca
     7201 taatcaacat tgccagttca gggcgttttt gccccaccac ttttaccacc atatcggcta
     7261 atttgagggc tgcaccggtt ttttctaaaa tcgtgccgat aatcgcccca aaaataatca
     7321 cgataccgat acttttgaag gtattactaa aaccttcgcc cacaatagtt ggaattttgg
     7381 caagcggtaa acctgccact aatgcaaggg ctatcgaaat cgacattaag gctaagaacg
     7441 ggtgaacttt ccacttcgca atcatataaa tcattatgat gatagcgacc agaaagatca
     7501 gaataagtgc aatacctgac ataataagtc tcctcattgt agaaaaatga acttattatt
     7561 cggtatttat tgctaaaaag atttagataa atttgcaaaa aatttgttaa aaacgaccgc
     7621 ttgtttgtat atttttacaa tttttacgac agaaccgctc caagatacag cacaaatttt
     7681 tgctctatgt tattgaaaga taaaccagtt atctgctcaa tcttctctaa acggtaacgt
     7741 agcgtatttg ggtgaataaa caattttttg gcagcgtgat ccagatcaca atttgcgaaa
     7801 aaatagtaac gcagactttt cagtaacacc tgttttttat cggaaaccag taaagcttgg
     7861 aacggcgaga gcaaggtttt cgcttcccaa gagtggctga aactgtgcaa gagggccggc
     7921 agtttaaaat cttcaaaatg aataatctgc ttacggcttt ggatctgctc ggcataattg
     7981 agggtatggc aggcggtttg gtaggaaata tgggtttgcg ataaattttc gaccgccagc
     8041 ccaaccaccg ttttgaagga aatatccgga tcgttaagtt tgtttagtgc attgcggatt
     8101 aacgattttt cgttggataa atgattcagc aaggcaattt tatctaaccc aatcacggcg
     8161 gtgagtaggc tcgggaaata atgttcgaaa aaatcaatca ggcgttggag tttttccgca
     8221 gtagagccgt gaattttaat caccatcacc gacagcggtt ttgcaaaatc ttgcccgaaa
     8281 aagaccgctt gttgctggat ttctgctgtg cttaggctac ctttgagcaa ggcccgcaca
     8341 aactcttccc gatagcggcg ttgccaacgt tcctgttcca actcaaacgc ttgctgcata
     8401 atcagctccg ccgccatttt caccaattga gcatattgcc gaacttgttg tggctgccct
     8461 gaaatcccca ctacaccaat ggttgagcct aaatagtgaa gcggtaagtt aatgcccgct
     8521 ttcacttcat cgcaccactg ttttgcaaga ttttcatcaa tttcgaccgc ttgatcgttg
     8581 cgtaacgcaa tcaccgctcc tgtgtgtcgt tgcccgatac gaccgacatc gccggaagca
     8641 ataatcaccc cttcactatc catcacattg acggagttgg gaataatctg catcgtgcgc
     8701 ttgacgatgc ggtcggcaat cgcttggttg agtttcatta tatgattcct actcattccc
     8761 aatactatga aaaatccctc tttcgaggga tttgcaaatt atctacgctt ccacttcctg
     8821 agaatagatc atagcgtgaa gttattttgc cacagtcgct tgaattaatt tttccgcttt
     8881 ggcaaggttg ttttctacat cagcataatc ggtattagcg tgagccacca cttgatcggc
     8941 acgatttaac attacttcga ccttgccctt gttcggttcg gtaattaaca cttttaacgg
     9001 taattgcaac gctaacatcg gatctttcac cattaatggc gtaccggctt tcggtgtgcc
     9061 gtaaaccaat acggttgccg gttgcatttc taagccggct tgttttgccg ccgcttggtg
     9121 atcgatttcg gcaaaaatcg tcattccttt ttcttttaag gtgttggtta aagttgtgac
     9181 tgtagtttgg aaatcaaatt tactttcaaa taccaccggt ttgacatcgg caatatctgc
     9241 cattgccacg ctgctcattg ctaatgcaga aactgcgact gcttttaagt tcatttcttt
     9301 tctcctcaaa tagattaaat aatcccttgt tcttccaact tgcctaagaa ataaggcatc
     9361 tgtttacgcc aagtcggcca gtcatggtca atatcaaagc cccagtagtc aaaccaagca
     9421 tcgatccctt ttgcgttaaa agcctcttgt aatcggcggg tgtcctcaat atgctgttct
     9481 tcccacgcac cttgtccgac tgcaatcaca tagtgatttt ggcggtagcg gtctaagaac
     9541 caatcgtcat tttgacccca tacataatca atcggcgagt taaaataaac cgctttatcg
     9601 ccataaaact caccactgaa aaagcgagcg tcataaacac cgcttaaggc gatggcaata
     9661 tcaaacagat ccggatgacg taaggcaaag tttaccgtat ggaaagcccc catactacaa
     9721 ccggtggcaa tcatcgtgcc gttccagtgc gattcatggc ggattaacgg cactagctcg
     9781 tgaataatat aacggtcgta agcattatga gctaatgcca tatcgtgtcc ggatttatgt
     9841 ttagataacc aagattccgc atcgtaagaa tcaggcgtgt aaaatttgat taagccacgt
     9901 tcaataaagg aacggcaagc ctcaatcatt ccaaaattac catactcgtt ttcattgccg
     9961 ccggaggaag ggaaaacaat aaccggttta cctgcgtgtc cgtaaacgtt gaacgacatt
    10021 tcacgaccta attctccact ccagtggctt cttttttcaa aatgcatact tcacctctta
    10081 ctgtttagct tgtgcaaatt gtgcaatttc acgcatttgc tccattgttt cggtacgggc
    10141 taaaatgcct tgttcgccca tcactttggc aaatacgccc ggtacgcttt gcacgctgat
    10201 aatattgccg gcaaatttct cacaaacagc ttcaatcgaa ttcacataat tttggtttgc
    10261 cttgcgggaa atataaacca cgttccaagg gtgctgaata tcggcataga atttgttttc
    10321 tttcacaata ttggcaaatt cacggaacac atcgaaatcg ttggcgtagt tccacatatc
    10381 aatagttaag ccacccggcg gacggcagtt gatttcgagt ggtaacaact cttctttttt
    10441 gctcccttta acacagaaga actcaaaatg gaaaaaacgc tcttttacgt taaaggcttt
    10501 cacacattgt ttgcccattt ccactaattt tggcgaaatt tcacatggga catagtagaa
    10561 catatcgcca tcttttgaaa cggtatctaa taccgcttct gaatattcaa ggctggagta
    10621 gaaaacgata ttgccctctt tatcggttaa accgtcaaag gtaataatat cgccgtcaat
    10681 aaactcttcc ataatatatt caaccgttgg cgttttataa ccgaagaaag cttctaactc
    10741 ttccgcagtt ttgattttgt aagtatcgct tgccccaacc cctgaatttg gcttgataat
    10801 caccgggaat ttaagctgtt ttgctaattt gcaggcatct tcatcatctt taaatactcg
    10861 cccttgtgcc actttcaagc cggttttgcg gaatacctct ttcatttggg ctttggtttt
    10921 aattgagagc atatcatcgc tcttataacc aaacacattg aaatcggtac gcaatttcgc
    10981 atctaactcc agccaatatt cattgtgcga ttcaatgcgg tcaattcgcc cgtatttatg
    11041 ggcaaagtac gcgaccgcac gataaacttg ttcgtaatct tccatattat ctacacgata
    11101 atattcagtc agggaatgac gcagattttc gctcaatgat tcataagggg catctgcaat
    11161 tcccaatgta ttaaaaccgg cttcacgcaa acgaatggca aaggtttcaa agttcgttgg
    11221 gaagtgcggg gaaatcatca caaaattaag tggtctagac atagttcttc ctttataaag
    11281 tttgcatatt attaaaatga ttagaataga ttttaggcta aatttattaa ttttcaaaat
    11341 gtattcacac aagcaataat t
//
LOCUS       DANLUT010000076        11310 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLUT010000076 DANLUT010000000
VERSION     DANLUT010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11310
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(12..734)
                     /gene="rffM"
                     /locus_tag="PXB38_001507"
     CDS             complement(12..734)
                     /gene="rffM"
                     /locus_tag="PXB38_001507"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL5353820.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLMAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            complement(724..1995)
                     /gene="wzyE"
                     /locus_tag="PXB38_001508"
     CDS             complement(724..1995)
                     /gene="wzyE"
                     /locus_tag="PXB38_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HDL5353821.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTRANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            complement(1988..3058)
                     /locus_tag="PXB38_001509"
     CDS             complement(1988..3058)
                     /locus_tag="PXB38_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL5353822.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFTHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRARSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            3245..4666
                     /gene="glnA"
                     /locus_tag="PXB38_001510"
     CDS             3245..4666
                     /gene="glnA"
                     /locus_tag="PXB38_001510"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL5353823.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            complement(4711..5856)
                     /gene="rffA"
                     /locus_tag="PXB38_001511"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(4711..5856)
                     /gene="rffA"
                     /locus_tag="PXB38_001511"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HDL5353824.1"
                     /translation="MNNPDFIPFNQPPVVGAEQAYIEQAMATGQLSGGGKFTRLCEQW
                     LENLARSKVLLTPSCTAALEMAAILLDIQPDDEVIMPSYTFVSTANAFALRGAKIVFV
                     DIRPDTMNIDERKIEQAITPKTKVIVPVHYAGIACDMDSIMATAEKYGLYVVEDAAQA
                     VNSFYKGRALGSIGHIGCYSFHETKNYTAGGEGGAIVINEANLLEKAEIIREKGTNRS
                     QFFRGEVDKYRWQDIGSSFLMSEIQAAYLYAQLIEADKINQQRLTLWHNYYQAFLPLA
                     QTAKCELPRIGEYCRHNGHLFYLKLSDLKQRTAFIDFMKAQNILTVFHYVPLHSSPAG
                     QKLGRLAGDDRFTTLESERLVRLPLFYNLSKQEQERVIQAVLAFFNQ"
     gene            complement(5843..6487)
                     /gene="rffC"
                     /locus_tag="PXB38_001512"
                     /gene_synonym="wecD"
     CDS             complement(5843..6487)
                     /gene="rffC"
                     /locus_tag="PXB38_001512"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL5353825.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            complement(6484..7731)
                     /gene="wecC"
                     /locus_tag="PXB38_001513"
     CDS             complement(6484..7731)
                     /gene="wecC"
                     /locus_tag="PXB38_001513"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5353826.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            complement(7772..8584)
                     /locus_tag="PXB38_001514"
     CDS             complement(7772..8584)
                     /locus_tag="PXB38_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
                     /protein_id="HDL5353827.1"
                     /translation="MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTI
                     PDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTE
                     AVKLKAQVAKKSPAVVAAELVEQFRFEKDMATSADNVSLIAENAEEAQKLLADFIPLV
                     NTQARDKLNADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLT
                     AYRLVKSPSVPLKSESPDPPILADDWGIKWLTAGLYAQFCGESESSTCGTLI"
     gene            complement(8595..9659)
                     /gene="wecA"
                     /locus_tag="PXB38_001515"
     CDS             complement(8595..9659)
                     /gene="wecA"
                     /locus_tag="PXB38_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL5353828.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            9801..11081
                     /gene="hemL"
                     /locus_tag="PXB38_001516"
     CDS             9801..11081
                     /gene="hemL"
                     /locus_tag="PXB38_001516"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL5353829.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
BASE COUNT         3339 a         2641 c         2310 g         3020 t
ORIGIN      
        1 aaatgcgttt tttagagctg atttgtcaga tagtaatagg catattttag taaatttaat
       61 tgtctttgcc agcgggttgg ctgtttcaat agtcgataaa gccattccag ccccaaattt
      121 tgccaaattt taggtgctcg tttcacttta ccggcaaaca catcgtaagt cccgccaaca
      181 cccatatata aggcttgtgg atattgttgt tgtaactgtt ggataaaaag ttcctgtttt
      241 ggagttccca ttgccacact aataaacttc gcgccacttg ctttaatttg ctctataacg
      301 tcctgttctt gctccgcctt aaaatagcca ttctgcctac cgacaatatt caccttccat
      361 tgtgccaatt ttgcttccac cttcgttagg gtatccgccg agctgccgac caaaaacacc
      421 ggcacattta acgctccggc tctttgcatt aaggtttccc ataaatcggc tccggcaatt
      481 cgctctattt tatagtttgg atattttttt cgaatcgatt gaacaacact gatgccgtct
      541 gcatagttga actcggcttc atctatcact cggcgtaaca acggattttt ttccgacaga
      601 atcactttct cagcattaat tgccattaat cttccgaact gaatccgctt ttcattcatc
      661 agccaatttg caaaaatttc ccgatttttg accgcttgta acgcaatgcc ccgaatgatc
      721 actttatcga acattattat ttttccccat tgaaaggatt ttcgccagca aatagcaagc
      781 cataaatatc agcgtgaaaa agcaaaaacg ggaaacaaat gcatcgattc cctctcgcac
      841 taatacgatc aaattgaata aattgccgaa gcagtaggct tgcaacaagg cggaattgca
      901 cgctttggcg taagcgaata ggttatctaa ggctttaatc atggcagcta ctatccccat
      961 tcccaacgcc ataacgctaa atccgcccat aatatagaaa gagccgagta aggtaggcga
     1021 aatagctaac cctgattggt tgcctaaaat cactttggta aaataattcg ccgtattcca
     1081 gacgatctca gggcgttctt gccataaaga ttgtgggata tatacataga aatcccgcac
     1141 aatcggcatt aaaccttgat attccacctc attagaaaat acacgagcca aattttccca
     1201 aggcgaaaaa gtatctcggc ttaaatataa gaaggtgtaa atcatctcgc taccggaaag
     1261 ggtaagtttg taacgggcta gagcgaggaa gaacatcgcc accacgccga ttaggcttac
     1321 ggcaatcacc tttgataacg acagatagcc ttgctgcaat ccaatcaata agaaaaagcc
     1381 aaccgctagt gctaaatttg cccgtgtgcc gcccactgcc acatagctta atatgccgaa
     1441 tgccccacca acaatcagta acgcccacca cgctgtttta ttcttatata ggaagcaaaa
     1501 aattaacaac gccggcaata aaaagtagaa aaatcgtttt aatgccgaaa gtatgaccct
     1561 atctttggca aacagttggc tatatttttc gagtttgaaa agcagaaaac cgtttaaata
     1621 aaggaaatat agcagggcaa caactgccac agcggcaagg atacaagcgg tcgtttttgc
     1681 ctgaaaattt gcaacaagag cagttggttg cgacacagca ctccacaagc gtgaatagac
     1741 aacgtaataa atcaaatagc caacacctgc tgccgtaaaa acttgccatt gtgtttttag
     1801 ctccggcagc gggtaatcaa agccaaatgc cattattaac gaaaacggaa aaccggcgta
     1861 aaaagtaaca aaatagagca aactaaacag taaatggaaa gaaatccccg atttctgata
     1921 aagttgataa agtaagctga aaaatagccc gacagaaaca agataaaatc cgccaagtgg
     1981 tattaaatta ttcattttgc attaattcga ttaatcgctg ttgccatagt ttagtgtagc
     2041 ccggagcaaa aaacgcaatg cggtttttat ctatgctctt tagttgttgt ttggttgttt
     2101 gaatctgtga agcagtcaga ttttccgcca acaaataagg cactttttct gcctgtagat
     2161 ccaacccaaa cggattggct gaatgtaaca cacaaggtac attatggcta atcaaaaggc
     2221 ttatcgtgcc aatgccttgc tggcgtttaa aattgaaata gccgagatca caatggctca
     2281 ataacgtaac atactcttca aagctcagct tcttccgcaa aatttgcaaa ttttccgcca
     2341 aaaataaccg cttgctatag gcttccacct gccgaatata gctttcatta ttttccgggt
     2401 agcccattgg tatgataatc cgcacattgt tccctagtcg ttgatgaatc tcgcttaagg
     2461 cttgaataag ctcattcgct ggatcgcctg aattgccgag caatatcgtc aagcgatcat
     2521 tttgtgtggg gctaattttt atttgatcac ctaatttcgt ggggaaatag attaaatgat
     2581 cctgttctga tcttgcacgc atatttcgcc acaaatgatc cagatcgcct cttgttgccc
     2641 aaacctgtaa gattttttgt tgggcaacac gccgaaacgg gtaaaacagc ttaaatttcc
     2701 acgaagttgc catttcatat aaatccgccc cccaaatatg ccaaatcagg ttggtggtcg
     2761 gcaatctgcc taaggctatc gccagccaaa tccaagggtt aaactgcccg tgtaacagaa
     2821 aacaagcggt cggattttgc cgtttttttg caattaaggc gttcgcaatc gctttttgtg
     2881 aagagaactg cttaatccgc aaatgagtaa aagcagtttg cagtgaaggc ttgcctacca
     2941 cataaaaaaa atgttcggag tctggcaata acggcaaaag ctcttgctga aaaaaggtta
     3001 aaacctgttg gttatgatgc tcaatctcgg agcctagaat atgataaatc ggcaacatta
     3061 cacgcttttc tctccccacc atacaaacaa tatgcaagcg gtaagatttt agcaaaaatt
     3121 tgcaacatta ctgcaacttc ttttagcttt gaaacactaa aaaacatcac acacttggtt
     3181 aaaaaatgct atgataaccg agctttttta ttattcattt atcccaacga ggacttattt
     3241 tactatgtca aacgcaatcg ctaatgtatc taaactgatt caagacaatg atattaaatt
     3301 tgtcttatta aaatttactg atattaaagg taaagaacac ggggtttcgc tccctgtcag
     3361 cttagttgcc aacgatttgg aagacttatt cgaggaaggc aaaatgttcg acggttcgtc
     3421 cgtagaaggt tggaaggcaa ttaacaaagc agatatgttg ttaatgccga ttgctgaaac
     3481 cgctgtagtt gaccctttcg cccgtattcc taccctttct attcgttgtt ccatttacga
     3541 cccaaacaca atgcagtctt atgaccgtga ccctcgctct attgcaaccc gtgccgaaaa
     3601 ctacttgaaa tccaccggta tcgccgatag cgtaatgttt ggacctgagc ctgaattttt
     3661 cttattcgat gatgtgcgtt ttagcaccga aatgaacaat gtgtcatacc gaattgacga
     3721 tgtagaagcg gcttggaata ccaaccgtaa atttgaagaa ggcaacaaag cctatcgtcc
     3781 gttgaaaaaa ggcggctact gtgcggttgc accgattgat accgcccacg atattcgctc
     3841 tgaaatgtgt ttattgatgg aagagatggg tttagtgatt gaagctcacc accacgaagt
     3901 tgcgacagcc ggacaaaatg agatcgcaac ccgattcaac agcctgacct taaaagccga
     3961 tgaaacccaa atctataaat acatcgtgca aaatgttgcc gtagaacacg gaaaaaccgc
     4021 ttgctttatg ccaaaaccgt tcgccggcga caacggctcg ggaatgcact gtaatatgtc
     4081 attaagcaaa gacggcaaaa atgtgtttat gggcgataaa tacgccggct tatctgaaac
     4141 tgccctctac tatattggcg gtatcattaa acacgcaaaa gcattaaatg cctttactaa
     4201 cccaaccacg aactcttata aacgtttagt gccgggtttt gaagcaccgg tgttattggc
     4261 atattctgca agtaaccgct ctgcctctat ccgtattccg gctgtgacca gtccgaaagc
     4321 gacccgtgta gaagcacgct tcccggatcc aatggcaaac ccataccttt gctttgccgc
     4381 cctgttaatg gctggcttag acggtgtgat caacaaaatc cacccgggcg atgcaatgga
     4441 taaaaactta tacgatttgc cgccggaaga gttaaaagat attccaacgg ttgcctcgtc
     4501 tttagaatcc gctcttgacg cattaagcaa tgattttgaa ttcttaacac aaggtggcgt
     4561 gttcacgaaa gactttattg atgcttatat cggtattcgt cgcaaagagg tggaacgtgt
     4621 aaatatgact ccgcacccgg tagaatttga actttactat tcatagtaac aacatatagc
     4681 aaaaaaacgg ctgaaacact cagccgtttt ttattgattg aagaaagcaa gcactgcttg
     4741 aataacacgc tcttgctcct gcttactcaa attataaaac agtggcaatc ttaccaaccg
     4801 ttcgctttct aaggtagtaa agcgatcatc acctgctaat cgacctaatt tctgccctgc
     4861 cggactgctg tgcaacggca cataatgaaa cacggttaag atattctgtg ccttcataaa
     4921 atcaataaaa gcagttctct gcttcaagtc acttagcttt aagtagaaca aatgcccgtt
     4981 atggcgacaa tattcgccaa tgcgaggaag ctcgcactta gctgtttggg caagtggcaa
     5041 aaaggcttga tagtaattgt gccaaagggt taaacgctgt tggttgattt tatctgcctc
     5101 tataagctga gcatacaaat aagccgcttg aatttccgac attaaaaaac ttgaaccaat
     5161 atcctgccag cgatatttat ctacctcacc acgaaaaaat tggctacggt tagtgccttt
     5221 ctctctgatg atttccgctt tttccagcaa attcgcctca ttaatcacga tcgccccacc
     5281 ttcaccgcca gcggtatagt ttttggtttc gtgaaaacta tagcaaccaa tatgcccgat
     5341 ggaacctaac gccctacctt tataaaacga attgactgcc tgtgccgcat cttctaccac
     5401 ataaagcccg tatttttcgg ctgttgccat tattgaatcc atatcacaag caatgccggc
     5461 ataatgcacc ggcacaatca ctttggtttt tggggtaatg gcttgctcaa ttttgcgttc
     5521 atcaatattc attgtatccg gacgaatatc cacaaacaca atctttgccc cacgcaacgc
     5581 aaacgcattt gcagtagaga caaaagtata gctcggcata atcacttcat cgtccggctg
     5641 aatatccagc agtattgccg ccatctctaa cgcagccgtg caagaagggg taagcaacac
     5701 tttgctacgg gccaggtttt caagccactg ctcacataag cgggtgaatt taccaccgcc
     5761 cgaaagctgc cctgttgcca tcgcctgttc tatataggct tgctccgccc ccacaaccgg
     5821 gggttgatta aacggaataa aatcaggatt gttcatcatc gtatttttcc aaagcagggt
     5881 aaaaccaata atacaccgcc ttaatgcttg caccaaacgc ttgataaaaa cgaatcgctt
     5941 tctggttact cagctgagtg gtaatcatca gttttttcgc attttgctgt ttcgcccacg
     6001 ctatcgcagc atttaacaat tccgagccaa taccttgttg tcggcaatca ggctttaccg
     6061 ccaataatcc gattttcgct tgctgttggg caagtaagcg aaccgttacc gccccttgaa
     6121 tttgcccgtc agcattgcat tgaaccaagc caatatcatc aaacttgcct tttaccgcat
     6181 tttcaatcca agtccggtaa aagcgttgat tctcttccct tgaaaaatag ggcgaacgaa
     6241 accggctatc gggaaatgcc gaaccaaaca ataagttcaa gtcgggcaaa tctgccatat
     6301 ccgccgggcg acaagcggtc atattttcag aaaatgttgc aagtgccagc tcaaattcca
     6361 attctccctc cacaagtaca aaaccttgtt tttgcaacct agcgatttgc ctaaaatcat
     6421 cagccgctac ttttacttgc acaatttctc taccgaaaaa atcggacagc cattgatccg
     6481 gcttcatctt acccacactc ctcgacaatc aataatatgc cgttgcctga tctgttccct
     6541 tgaaatttgc ttaaatgaag tgtgatccac taacaagact aaaatgtctg cctgcgaaag
     6601 tgcggtgttg agatcgacta aggtgatttt ttcgccagcc agctgttgaa tatttggctc
     6661 aaccgccaac aggctaccct gatgccaagc ggcaagttgc cgggtaatcg ctaatgccgg
     6721 gctttcccgc aaatcatcaa tattcggctt gaaagctagc cctaaacaag cgatggttag
     6781 ctcacttggc ttacaatctt gctccatcgc acagtctgcg accgatgttt tcacttgctc
     6841 gattacccat tgcggtttgc tgtcattcac ttctcgtgcc gtgcgaataa ggcgagcctg
     6901 ttggggcgat gtggaaacga taaaccacgg gtcaaccgcc aaacaatgtc cgcccacccc
     6961 tgctccgggc tggagaatat ttactctcgg gtgaagattt gccaattcaa ttagctccca
     7021 cacattgatc ttcaacgcat cacaaatcat tgaaatttca ttggcaaagg caatgttcac
     7081 atcacgaaag ctgttttcca ccaacttgca catctccgct gtgcgagctg tggtggtgac
     7141 acaacgtcct tttgcaaaaa tttggtataa atcgaccgct tgttgactgc attgttcgct
     7201 taatccgccg ataatgcggt cattttcaac caattccgtc attatattac ccggcaaaac
     7261 acgttcaggg cagtaggcaa tagacacatc ggctggaaag gctaaatcag ggcgagcttg
     7321 gcttagccat tcggctaaat tttctgttgt accgacaggc gaagtggact ccagcaccac
     7381 caaattccct ttacgcaaac aaggggcaat catagcggcg gcattttgaa tataagtgag
     7441 atcgggctgc ttcccgcaaa gtggggttgg cacggcgatg ataaaagcat cggccggttg
     7501 cggtttggca gttgcaaaaa aattaccttt tttgaccgct tgtgtgaagg cagtttgtaa
     7561 atccggctcg ataatatgaa tgttgccttg attaaggctt gccaccactt gcggattaat
     7621 atccacccca attacttgct tgccggcatt ggcaaaaacg actgaggtcg gcaagccgat
     7681 atagcctaac cccagaatac aaatagtgtt aaattcagtt ttactcatca tcagttacaa
     7741 agagaaatgg cacactaaat tgtgtgccat tttagattaa agttccgcag gttgagcttt
     7801 cgctttcacc gcaaaactga gcataaagcc cagcagtaag ccacttaatg ccccaatcat
     7861 cagccaaaat aggcggatca ggcgattctg atttaagtgg aacgctaggc gatttaacca
     7921 agcgataagc tgtaagttgg ttgtctaacg gctgaacaga acgcatcatt tgcagtttag
     7981 ctgcccaatc ttgtgagcct tgcttaccgt taatattcaa ctccgaagca gttttaattt
     8041 gctggaacaa gactttccat ttcgcaatta aatcggcgtt taatttatct cgagcttggg
     8101 tgtttaccaa cggaataaaa tcggctaata atttttgagc ctcttccgca ttttctgcaa
     8161 ttaagctgac attatctgcc gaagttgcca tatctttttc aaaacggaat tgttcaacta
     8221 attcagccgc caccaccgcc ggtgatttct ttgcaacctg agcttttaat ttcaccgctt
     8281 ctgtttgtag caaataggct tgaagcaagt cggcggacgt gaggttgcgt ttaaattccg
     8341 cataaacctg ctcacttgcc tgttgctgtg ccgtttggct attcgcttct tggctattac
     8401 tattcaaaaa atggtaggtg gaaagtaacg agtaataatt acctaaatcg ggaatagtcg
     8461 gttgctcaaa ttgagcggtc actttccatt tttcaggttg agtataactc agcccataac
     8521 cggcacctgc cccgatagca gcaaataaaa ttagcactaa aagtcgataa aataaggttt
     8581 tcacaacata tcctttaaag ttgtttgcta cgttttgcac ggcgttttag acggcgaaca
     8641 aaacgggtta cacgccaagc gtgggtaatg gaataggcgt ataggaaaaa cagcccgata
     8701 aacattagca tcatcaccca ctgattccaa taatacacct cgcctaatac cccaatggtg
     8761 gaacaaaatc ccgcccagag ggtaatcacc aataatgctt ggcgagaggt aagccctgct
     8821 cgcatcatta aatggtgtag gtgcaagcgg tctggtttga acggactttt accttttttc
     8881 aaacggcgga taatcaccgc aaccatatca attaacggca cggcaatcag ccacaaaccg
     8941 gtaatcgggc taattggcga gccttgccct tgggtgctta acagcagaat ccaaataatg
     9001 gtaaagccga tcagcatact gcctgagtcg cccataaaca ctttccattt cgccccaaac
     9061 aggctcaaat tgaacattgc atacggcaac aacacaaaga taagggcaaa gcaccaatag
     9121 cccaaacttg gttcgccatt aatgaacatt aaagtgccaa gaccggcaaa actcacgctg
     9181 gaaagccctg ctaataagcc atcaatccca tctaccatat taaacgcatt aataacgcca
     9241 atggtgataa acacggtaaa gacaatgccg agccaaccta attctatact aaagggggca
     9301 ataatttgcc ctaaactgct gagcgacaag ccactgtaaa tcatcgcccc agctagtgct
     9361 gcttgaatcc cggcacgcag taatgggctg atgtcaaatc ggtcatctaa cacgccgata
     9421 atcagcaaaa tagttaccgc tgtcagatac agttccggca gccgcatatc ttgccactgc
     9481 ataaaataga aagtgagatt gccgataaat aatgcaatac caccgattaa cggaatcaac
     9541 ccctgatggc gtttacggaa gttgggctta tctaccaaac caacaaattc cgccaccgga
     9601 cgcatcacaa tcagggctaa aaaagaaaca ataaatacgg ttaaaaaagt aagccacata
     9661 cagggattgc ctcaaaaaat gagtcataaa ataggaatgc agaatagcat aaggcaacaa
     9721 aatcgtaaat tttttagcga aaacaagggc ttttcagtac aataacaggc aaatttttac
     9781 atcaaaagaa aggaattgat atgtctattt cagaacaact gtttgaacaa gcccaaaaag
     9841 tgattccggg cggtgtgaac tcccctgtgc gtgcatttaa aggcgtgggc ggcacaccgg
     9901 tttttattga aaaagccgaa ggtgcttata ttaccgacag cgacggcaaa caatatatcg
     9961 actatgtcgg ctcttggggg ccaatggtac tcgggcataa ccacccggcg attattgatg
    10021 cggtgctaaa agccgtgcca aaaggcttaa gtttcggtgc cccaacggca gcagaaatca
    10081 cacttgccga attagtgtgc aaattagtac cttctattga aatggtgaga atggtgagca
    10141 gcggaacaga ggcaacaatg tctgccattc gtttggctcg tggctatacc aaccgagata
    10201 aaatcatcaa atttgaaggc tgctaccacg ggcattccga ttctctgtta gtaaaagccg
    10261 gttcaggtgc tttaaccctc ggtcagccaa gcggcccggg cgtacccgct gatttcgcca
    10321 agcatacgct tacttgcacc tataatgatt tagattcagt aaaagcagca tttgagcaat
    10381 acccaaatga gatcgcttgt ttaattgttg agcctgttgc cggcaatatg aactgcattc
    10441 cgccacaaga aggcttttta caaggcttac gtgatctttg cacacaatat ggtgcggtat
    10501 ttattattga tgaagtaatg accggcttcc gtgtcgcact cggtggggct caatcttact
    10561 atggggtaac accggattta accacactcg gcaaaattat cggcggcgga atgccggtgg
    10621 gggcatttgg tggtaaaaaa gagattatgg aatacatcgc tccaactggc ccggtttacc
    10681 aagccggcac gctctcaggc aacccgattg caatggctgc aggtttggca tgcttaactg
    10741 aattatcaaa agcaggaaat gaaaccattt tagcggaaaa aaccaaaacc ctcgctgaag
    10801 gctttaaagc tcttgcagat aagcacaatg tgccattaac ggtacaatat gtcggcggaa
    10861 tgttcggctt attcttcacc gaacaaaaag cagtaaacaa cttccaagaa gtaatgaaat
    10921 gtgatgccgc caaattcaac cgtttcttcc acttaatgct ggaacaaggc gtgtatttag
    10981 ccccatcggc attcgaggca gggtttatgt ctttagctca cagtgatgaa gatattgctc
    11041 gtacgctaga ggctgcggat aaggcatttg ctcagcttta gaagaatgac aagcggttgg
    11101 gtttactcaa taatttgcaa gtttttgagg gaatttgacc gcttgtagtg caaatttctc
    11161 ttacgatagc aattatgatg gtgttcgtct ctgacgagtg cttatacaaa ctttcattat
    11221 gcttaaacaa gcacccgtct ggagacgggc gctatcgagg gaataggatt gataaagcaa
    11281 tatatgggct tccaacactt gcaggcaagg
//
LOCUS       DANLUT010000077        11248 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.078, whole genome shotgun sequence.
ACCESSION   DANLUT010000077 DANLUT010000000
VERSION     DANLUT010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11248
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXB38_001517"
     CDS             complement(145..492)
                     /gene="frdD"
                     /locus_tag="PXB38_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL5353830.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
     gene            complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXB38_001518"
     CDS             complement(506..898)
                     /gene="frdC"
                     /locus_tag="PXB38_001518"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL5353831.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFATDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            complement(908..1639)
                     /locus_tag="PXB38_001519"
     CDS             complement(908..1639)
                     /locus_tag="PXB38_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL5353832.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXB38_001520"
     CDS             complement(1655..3457)
                     /gene="frdA"
                     /locus_tag="PXB38_001520"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL5353833.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMVY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            3789..4772
                     /gene="epmA"
                     /locus_tag="PXB38_001521"
     CDS             3789..4772
                     /gene="epmA"
                     /locus_tag="PXB38_001521"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL5353834.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            4854..5744
                     /gene="rarD"
                     /locus_tag="PXB38_001522"
     CDS             4854..5744
                     /gene="rarD"
                     /locus_tag="PXB38_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5353835.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWAALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(5755..6366)
                     /locus_tag="PXB38_001523"
     CDS             complement(5755..6366)
                     /locus_tag="PXB38_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353836.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGVVALGTFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLLHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVSGRVGLISGTMFGLMFG
                     IGGLSAAVLGFLADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(6394..6933)
                     /locus_tag="PXB38_001524"
     CDS             complement(6394..6933)
                     /locus_tag="PXB38_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353837.1"
                     /translation="MHTQHNAQKMVLPILLLISLSHLLNDLVQAVMVSIYPMLKENYQ
                     LSFAQIGMISLIYQITASIIQPGIGLYTDKYPKPNLLPVSMLITLLSVILLAFSLNFG
                     VLLIAAALMGIGSAIFHPEASRVARMASGGKFGTAQSLFQVGGNSGSALGPLLVALFI
                     VPLGQSAVIWVVAFVLLAL"
     gene            7125..9134
                     /locus_tag="PXB38_001525"
     CDS             7125..9134
                     /locus_tag="PXB38_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL5353838.1"
                     /translation="MDLIKKLNTGSTFRIPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFEQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            complement(9199..9666)
                     /locus_tag="PXB38_001526"
     CDS             complement(9199..9666)
                     /locus_tag="PXB38_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL5353839.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(9668..11242)
                     /gene="murJ"
                     /locus_tag="PXB38_001527"
     CDS             complement(9668..11242)
                     /gene="murJ"
                     /locus_tag="PXB38_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL5353840.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
BASE COUNT         3302 a         2524 c         2185 g         3237 t
ORIGIN      
        1 atcttttttg cagatattta atacaaaacg atcgttttat cggcaaaatt tctaatattt
       61 gcaaattttc ttataaattc gaccgcttgt tagcatatta aaaatgaaaa gaccatctgc
      121 tttatacaag atggtctttc tcatttaaat ctgcacgact gcgatgatta ctagaattgt
      181 gtataagata gacaatccgt agaaaatcac attacctgct ggcgtgtgaa ctttcaggtc
      241 gtgtaatcca tgatggatac ggtgcattcc tgcccacata gggaaaatcg ctaataccat
      301 aatagcgagc ttgccgatcc aagtatgggc aaaggaaatg atattatctg gtgatactaa
      361 cccgaatggc agtaataaac cgataataaa gattaccaca gggaaaaata atgcacttac
      421 cattccccca gcactaaaaa gcaaccatac cggcggttca tttgaacgtt ttgggttttg
      481 atcaagactc attttcttcc ccttcttaaa tataaaccaa gattaatgca attacgctaa
      541 ttacgcctgt tgctgcccaa agaatatttc ttccaaccga gactggtaag tgtttacctt
      601 taaccatcac ggacatgacg gcaggtgtca tcacaaaaag tgttgccgca tgatataaca
      661 ttgctgccaa tgaaattatg tttaggataa caactaacgg attttgtaag aaatccacaa
      721 aatcggtagc aaatgttcct ttacttaacg caactgctcc ataaaataat acaatgcaga
      781 accaaacagt tggaagacag gtagcttcac gcaccatata cattttatag aagtcgagtt
      841 ttttccacca gctggctttc attcccctta cataaggtct acgttttgtt gctgacattt
      901 cttcctccta tctcggtttg atcattgaga taacataatc tttcgcactt tcaagtttac
      961 cttggtttac agccgaagca gggccgacgt gtttcggaca gacttccgag cagtaaccca
     1021 cgaaagtaca gctccaaaca ccgtttttgc tgctgagtag cttcatacgc tcttcacgac
     1081 cattatcacg gttatccaag ttatagcggt gagccaatgt aatcgcagca ggtccgataa
     1141 attcagggtt caaaccaaat tgtgggcaag ccgcataaca taaaccgcag ttgatacaca
     1201 ttgagaattg acgatatttc tctaattgtg ccggcgtttg tttagtacgc tgtccttccg
     1261 gtgctttatt atcaataata taaggtttaa ttgcctcgat gctatcaata aagtggctta
     1321 aatccactac taagtcacgc tcaatcggga agttcgccag cggctcaatt cgcataaaac
     1381 cgctgtaatc acgcaggaat gttttacaag ctaacttcgg cttaccgttt accatcattc
     1441 cgcaagaacc acaaatcgcc atacggcaag accagcgata agaaagttcc ggttctaatt
     1501 cgtctttaat gaagcccaat gcatctaaaa gtgaagtttg gctgtcatac ggcacttcat
     1561 atctgtctaa atgtggctcg ctatctgatt cagggttgta gcgtagcact tcgatggtca
     1621 ttttatctaa atttgccatt ttactactcc ttctctattg ttgtgcttga gcttctgctg
     1681 cttttttgac tttttcttgg gcttcagcct ctgcaccata cacacgttta gccggttgtg
     1741 atttagtgat tttcacatcg ctgtatttaa tcgtcggtgt accctctgca ttgtagtacg
     1801 cttgtgtgtg ttttaagtag ttcacatcat cacgctcaac atagtctaaa cgttggtgag
     1861 ccccacgaga ttctttacgc tctaccgcag agcaagcaat ggattgagcc acatctaaaa
     1921 tgaagcctaa ttcaattttg tagagtaaat cagtgttaaa cacacttgat ttatctttta
     1981 cgctgatgtt tttataacgc tcttttagct cttggatttt gtttacagtc gcttccatac
     2041 tttcttgggt acggtaaata ccacaacctt cttccatcgc atcacccatt tggttacgga
     2101 tatccgacca agattcatta ccctcttggt tcgctaatgc gtgcaagcga gccaccacat
     2161 cttttgcttg tgcatcaatt tgtggctggt tgcgagcagt cacttctaac gcacggcgag
     2221 ccgcattttc accggcaact ttaccgaaca ccacaagctc tgctaatgag ttagaaccca
     2281 aacggttcgc accgtgcaag cctgatgaag cacattcacc tactgcgaat aagcctttaa
     2341 ttgaggtttc cgcattcata tccacttcaa taccacccat cgtgtagtga accaccgggc
     2401 gaacaggaat cggcgcttta gccggatcga ccccttcata ggctttcgct aattcacaaa
     2461 taaacggtaa acgctcaagt aaatattttt cacctaaatg gcgtaaatct aagtgaacta
     2521 cgtccacgcc ttttgcggtt tttaaggtgt tccctttacg ccattcttgc cagaatgctt
     2581 gtgaaacctt atcacgaggg cctaattcca tatatttgtt ttccggtttg ccgattggtg
     2641 tttccggtcc taaaccataa tcttgcaggt aacggtagcc atctttatta actaaaatac
     2701 caccttcacc acgacaacct tctgtcatca aaataccggt atttggcaaa cctgttgggt
     2761 gatattgtac gaactccata tcacgcaaag ccacaccgtg acgatacacc attgataaac
     2821 cgtcgccggt tacaataccg ccgttagtgt taaagcgata agtacggcag ccgccaccgg
     2881 ttgcaatcac aactgcattt gcattgattt gaacaagtgt gccttccatc atattcattg
     2941 ccacacaacc acgagcttca ccgttgtcgg tgagaatatc cagcacaaaa tgctcatcaa
     3001 aacgcacaat attcggatat ttaatcgaag tttggaacaa agtatgcaaa atgtggaaac
     3061 cggttttatc cgccgcaaac caagtacgct caattttcat tcctccaaaa cggcgaacat
     3121 tcacttcacc gtcttcacga cgactccaag ggcaacccca gcgttctaat tgtgtcattt
     3181 caatcggcga atgctctaca aaatactcca caatatcttg ctcacataac cagtcaccac
     3241 caccgacggt atcattaaag tgattgtcga aagagtcggt atctttaatt accgccgctg
     3301 aaccaccttc tgctgcaacc gtatggctac gcattgggta aacttttgaa attaaagcaa
     3361 tttttagatt tggatttgct tcagccgccg caatagcagc acgcaagcca ccaccaccgg
     3421 cacctataat cgcgacatca aaattaacac tttgcataat gcactccgaa agttaaataa
     3481 cttaattcat taaaaagtaa tcatattgtg ccactatttg agcaatgaga taacctattt
     3541 ttacaaattt gtaacataaa aaatgtaatt ttgtgatcta cctcaaaaaa ggtaataaag
     3601 cttataaagg tattgagaat ggctcttaat tggacagtga tagaaagaaa atttctaatg
     3661 tttaaaatga gaaaatttaa tttgttgcaa aaaagttaaa accctctctt tatttttctt
     3721 gatcggtaac tagggcaact cactttttta ggctaaaata gcctcacatt ttcaagcggt
     3781 cattttttat gaacaattta caactcgata atattgattg gcaaccaaca gcctctattc
     3841 ctcacctgat ccaacgttca aaaatcatta cggaaatccg caagttcttt accgatcgag
     3901 ggcttttaga ggtagaaacc ccgattttaa gcgaattttc ggtgacagac gttcatcttt
     3961 cgactttcaa tacgcagttt caatcgcctt tttcccctga ggcgaaaaca ctccatctga
     4021 tgaccagccc ggaatatcat atgaagcgac tacttgctgc tgggagtgga ccgattttcc
     4081 aactgtgtaa agtatttcgc aacgaggaag ccggtaagcg acacaaccct gaatttacga
     4141 tgctggagtg gtatcgcccg cattttgata tgtatcgctt aatcaatgaa gtggatgatt
     4201 tactgcaaca aattttggac tgcgaaccgg cagaatcatt cagctatcaa tttgtgttcc
     4261 aaacctatgt cggattagat ccgctttctg ccaccaaagc acaacttgtg gaaaaagccc
     4321 gaaaacacgg cttgcaatgt gatgatgatg aacagcgtga caccttgtta caatttttat
     4381 tcagcgaggt tgtcgaagcc aatatcgggc aagaaagacc aactgccgtt tatcatttcc
     4441 cttccaccca agcggcatta gctcaaatta gctcggaaga tcaccgtgtt gccgaacgtt
     4501 ttgagtttta ctacaaaggc ttggaactct gtaacggctt ccacgaatta gacgatgctg
     4561 atgagcaaat tcatcgcttc gagcaagata atctgcaacg tgaaaaaatg gggctggagc
     4621 cacagcaact agatgtgcgt tttcttgccg cactcaaagc gggttttcca aactgctcag
     4681 gtgtcgccct tggggttgat aggctgttaa tgctggcaat ggatgcggaa aaaattgaag
     4741 aggttatttc tttcggcatt gaaaaagcct aattttttat gccgttttgt gatttgcaat
     4801 ttgcaaaaaa atcgacaaat atgaccgctt gtacactcgt ttaggaaagc aaaatgaata
     4861 tttcaggcaa attacagggt tggcactatg ccctactgtg ctacttaact tggggaacct
     4921 ttccgattta ttggtatccg atcaaccaat cgggaatgcc tgccgagcaa attttggctc
     4981 aacgggtgct ttgggctgcc ctatttgctg tgtttctgct gctgattttc caacaagggc
     5041 gagcggttat taatgccttt aaacagccaa aggtactcgg gctgttcgtg ctttcttctt
     5101 ttatgattgg cgtgaactgg ctggtttact tatgggcaat cgtcaatgag catattttag
     5161 atgccagtct aggttatttt atcaacccca ttttcaacgt gtttgtcggt aggcttattc
     5221 taaaagagca actgaataaa gcccaattat tggctctgct gtttgcaatt agcggcattt
     5281 tatggcttgc tattcctgcc ggacaaattc cgtgggtcgc attgattcta gccgccagtt
     5341 tctgtattta cgggctgatt cgtaaacttg ccccaatgga acctttgtct ggtttggcgt
     5401 tagaaacttt gctgatgtcg ccttttgcca tcacctatct ctgcttttgt taccaccaaa
     5461 acattttggt attcagtgaa ctcaatcctt tacaaatggc agtgctactc tgctccggca
     5521 ttgccactac cttaccattg ctatggtttg caatgggtgc aagacgcatt tcaatgtcgc
     5581 tactcggtat gctgcaatat atttcaccta ccctgcaatt tttatgcggt gtgctgattt
     5641 ttaatgagac actttccgcc gaacgtgctg taggctacat tctggtttgg attggggtgg
     5701 gggttttctt attgggtatg aaaaaagctg gtgtcaaacg ctaaaaataa aacgttaaat
     5761 atttcgtttt ggtagcccta atgcagcaaa accaagtagt ggcaaatagg cacaggcttt
     5821 aaaaatactc tccaagccat attcatccgc caaaaaaccc aatacggcgg cacttaagcc
     5881 gccaatacca aacattaaac cgaacattgt gccggaaatc agccctactc tgcctgatac
     5941 ggcttcttga gcataaacca ccatagcgga gaacgctgat gacataataa aaccggcaaa
     6001 aatcgcacac acaatcgtcc aaaagagatc tgcgtgaagc aacaacaaag caaaaggtgc
     6061 catacctaag aaagagaacc aaatcaccgc atttcgtcca atcttatcgc caatcggccc
     6121 gccgacaaaa gtgcctaaag caactacacc taaaaaggta aatagagaga gctgtgccat
     6181 tgctatattg agttggaatt tttccattaa ataaaaggtg aaatagttac tgaggctcgc
     6241 aatataaata aatttcgcta acatcaataa agcgataatt aataatgctc tggctaataa
     6301 tttaccgtgt aagcgttgtt gaatatggtt tggtgaaata atgagcggtt tggcttcata
     6361 tttcacccaa cggcttactt tatataaaac ccatcataat gccaataata caaatgcaac
     6421 aacccaaatc accgcacttt gccctaacgg cacaataaat aatgcaacta agagcggacc
     6481 taacgccgat ccactgtttc cacctacttg gaaaagcgac tgagctgtac caaatttacc
     6541 gcccgatgcc attcgagcca cccgagaggc ttcagggtga aaaatggcag agcctatccc
     6601 cattaacgca gcggctatca gtaacacgcc aaaattcagc gaaaaggcaa gtaaaatcac
     6661 ggaaagaagc gtaatcagca tactgacggg caataaattc ggttttgggt atttatcggt
     6721 ataaagccca atacccggct gaataataga tgcggtaatt tgataaatga gtgaaatcat
     6781 accaatttga gcaaaactca gttggtaatt ttcttttagc attggataga tcgaaaccat
     6841 tactgcttga actaaatcat tcaacaaatg agaaagggaa atcagcagta aaatgggcaa
     6901 aaccattttt tgagcgttat gttgtgtgtg cattctttat tcgtttttta taaatgaaaa
     6961 atattctact cgcaaataat gaatgtgcaa gcggtcaaat ttcccgattt ttttaccaaa
     7021 cccattaggt tgcaatatta ttaccaatac gtcttaaatt tgttattttt atatcttttt
     7081 gctatattca agcctctaac cattcaaaaa tagaggaaat agcattggat ttaatcaaaa
     7141 aattaaacac aggaagtacc tttaggatac cgattttcct accgagttta ctctttgtca
     7201 gctttgttgc cgttttctgt atcatctttc cacagcaagc acaaacctca cttgatacca
     7261 tcaaaaatag tctcttccaa cattttagct ggttctatat ttttgcaggc tctatctttt
     7321 tcctgtttct aatttttctc tctttcagcc gattgggtga tattaaatta ggggcagata
     7381 ccgatgagcc tgaatttggt tttggctctt ggattgcgat gttattcgcc gccggaatgg
     7441 ggatcgggtt aatgtatttt ggggtagcag aacctatttt gcattacctt aaacccgtcc
     7501 aacaaaattt aactgagccg gagcgtatga aagaagcgat gatgacaacg ttctatcatt
     7561 ggggtattca cgcttgggca atttatggtg tgattgcctt agctcttgct tattttggtt
     7621 tcagatataa gttagcactc actattcgtt ccggatttta tcccttacta aaacatcgta
     7681 tttcaggctt ctgggggcat ttaattgata ttattgccct ttgtagcacg attttcggtt
     7741 taacgactac acttggcttt ggggtgatgc aggtcagtgc tggctttaac aatctaggtt
     7801 taattgaaca gagcaatttt actgttcttg cgattatcgt aacagtagca atggctcttg
     7861 ccgtgttatc tgccgtttcg ggcgtaggca aaggggttaa aatcttaagt gaaatcaatc
     7921 tcacattagc cggattgcta cttatttttg tgataatcac cggcccaact ctattacttt
     7981 tctcaagctt caccgaaaat ttaggctatt attttagctc gctgcttgag atgagtttcc
     8041 gtaccttcgc ttatgaaccg gaacatcaag gctggctaag cggctggacg gtcctttatt
     8101 gggcatggtg ggcatcttgg gcgccatttg ttggtttgtt tattgccaag atctctaaag
     8161 gcagaaccat tcgtgaattt attttagggg tgctatttgt tccatcgctg tttaacattt
     8221 tatggatgac cagcttcggc agctctgcca tttggttcga acaacaaact gccggtgctt
     8281 tagctgaagt cagcggcaat accgaacaac tgttatttac cttttttgag caattaccgt
     8341 ttggctctat tgcctctttc gttgccgtca ttgttatcag tattttcttt atcacctctg
     8401 ccgactcggg gatttttgtt ctcaacagca ttgcttcaca aggcgaagaa aatgcaccga
     8461 aatggcaaag cgtgctttgg ggagcattat tagccatctt agcgttatca ctactctatt
     8521 cgggtggctt ggcttctctg caaacaatga cactgattat cgccttacca tttaccttca
     8581 ttatgctgat tctctgtatc ggcttatgga aaggattaat ggtagataac caatacttca
     8641 acaaaaaatt ctcgcaaggt agccaacatt gggcgggtaa agattggaaa caacgcttgg
     8701 agaaaatcat caacccaagc aataagcaag atgtccgtca cttctttatt aaagttgcca
     8761 gaccggcatt tttagaactt atcgaggaat ttgaaagcta tggcttaatc gctaaaatga
     8821 atttcaccaa cgaacaaaac ccgaaattag agtttgaagt ggtgaaagaa aatttacgca
     8881 atttcattta cggcattgaa agtgtgccac gggaattatc ggatttggtg gtaggtgacg
     8941 acaacctacc gaacattgag caaaatacca tttacgagcc gattacttat ttcttagacg
     9001 ggcggaaagg ttatgatgtg caatatatga ccaaagaaga gttgattgcc gacgtgctgc
     9061 aacagtatga acgctttatc aatttagcga tggacaactc gcacgactta atgacggctg
     9121 atttcaatca ctaaccccac aagcggtgag attttcggaa aaatttgcaa atttccaaca
     9181 aaatctcacc gcttgcattt aaagccaacg ccttacttgg ttgcaatatt tggcataatg
     9241 tgtgccgaat ttttgggcta aaatttgctc ttccggcttg atttggaaat aggttatcaa
     9301 ccatacaaac agcggtaaaa ccagccacgc caacattgcc cccaaccata atgcccacgc
     9361 aatcaaacct aacagtaacg aaagatacat tgggtttcgg cttttgcggt aaatgcccca
     9421 agtgaccaat ttagcggtat gttgtggtcg aaaaggactg tatgtcgttt tcgcttggtg
     9481 tatgacccaa agtgccgaga cggcaaccgc tccgccaatt atcgccacag ctaaaccgct
     9541 aaaaaatatg gctgtatgct gataattcgg caagctcacc ggcacatatt gagctaccag
     9601 ccacattaaa gcggcacaaa gcaagaacca agccggcggc gggattttca gttttaatga
     9661 tttcatttta tgccgagcgg aaatcttttt tacgaatgcc taataccaaa atagaggcaa
     9721 aataactacc gccggctaag atcatcagcc aaatcagcca atacactttc tgccacattg
     9781 tcattaatgc ccaaagttca atctcaggcg tgaaataggc aaccaacgcc cccattacac
     9841 aagcggcgat gaatagtttc aacacaaaaa gcacggtttt atggcttact ttatagtaac
     9901 cattttttga gagattcaca tacagcaagc tcacattcac taatgccgaa cacgcagaag
     9961 ctaacgctaa accaatgtat cccaaaaacg gagcaaacgc caagccaaag caaatattac
    10021 ttaaggcggc aataatccca acttttaccg gtgttttggt gttttggttg gcataaaaac
    10081 cgtttgccag cacgctaatc aacatatagc tgtttaaccc caagcacatt acccaaagtg
    10141 gataagaggt tgccagcaca tcttcaaaac caaatttacc ccgcataaac attgtcataa
    10201 taatcggctg agccagcact gccataccga tcattgccgg aatgccgagc aacagcacca
    10261 ttctcacccc ccaatccatt gtgttttgaa agtgttctcc acgttggatt tcagtgagtt
    10321 ctttgttttt cgcaatacgg gaaaggcttg gcagcacgac ggtggaaatc gcaattccaa
    10381 ataaaccgag cggaaattca attaagcggt cggcataata catccaacta atcgagccgg
    10441 taatcaaaaa cgaggcaatc acttggttta gcagtaaatt tagctgggta acggaaacgc
    10501 caaataaagc cggaatcatt aatttacgga ctttagtgac accttcgtct ttccacgccc
    10561 attttggctt aaccagtaag ccctcttttt tcataaatgg aatttggaat aaaaattgca
    10621 ataagccgcc taaaaatacc ccccacgcta aggcaatatc cggggaatcg aaataatctc
    10681 tgccccataa cgctaccgca ataatcgcca cattcagcaa caccggggaa aatgccatca
    10741 ccccaaactt accgatggta tttaacaccg caccggataa cgccacaaag gtaataaacc
    10801 acaaataagg gaaagtgatt ttgagcaaaa aagaggcttg ggtgaatttt tcggcatttg
    10861 gcccgtcgta aagccaatct aaaaaccaac ctgtaccaaa aagagcggca accacaggcg
    10921 aggcaatcat tgccacaagg gtaacaacag ttaccaaacc tcctaatgta cccgatactt
    10981 tggcaataaa ttctctcgtt ttgtttggat cattatccgc attatattcc gccaacaccg
    11041 gcacaaaggc tttagaaaat gccccttcgg caaacaaacg gcgaagaaaa ttgggaatac
    11101 ggttggcaaa caggaaaata tcggcactca cgcctgtgcc taaaatggtt gccaccacaa
    11161 tgtctcgaat caagccgagt atgcgagaaa ttaaggtcat aaagcttacg atcattcctg
    11221 atcttaaaag ttttttgctc ataataaa
//
LOCUS       DANLUT010000078        11139 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLUT010000078 DANLUT010000000
VERSION     DANLUT010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11139
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..661
                     /locus_tag="PXB38_001528"
     CDS             <1..661
                     /locus_tag="PXB38_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5353841.1"
                     /translation="TTIVGPNGGGKSTLLKILLKLLSPNKGKVIHQKGLKIGYVPQKL
                     HLEPSMPITVYRFLALKPHTTKEMINQALDLFSITHLTENSMQKLSGGELQRVLLARA
                     ILDRPQLLVLDEPMQGVDIIGQTELYQLLNKTRDLLNCAILMVSHDLNIVMANTDEVL
                     CINKHICCAGSPEVITHDPSFIHFFGDQFARNVAFYSHKHNHHHNLHGDICLGECSCE
                     H"
     gene            826..3639
                     /gene="sucA"
                     /locus_tag="PXB38_001529"
     CDS             826..3639
                     /gene="sucA"
                     /locus_tag="PXB38_001529"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL5353842.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQFEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDTEHEKVLAVTVHGDSAVAGQGVVQETLNMANARGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            3742..4971
                     /gene="odhB"
                     /locus_tag="PXB38_001530"
     CDS             3742..4971
                     /gene="odhB"
                     /locus_tag="PXB38_001530"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL5353843.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5264..6421
                     /gene="sucC"
                     /locus_tag="PXB38_001531"
     CDS             5264..6421
                     /gene="sucC"
                     /locus_tag="PXB38_001531"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL5353844.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQIHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6430..7299
                     /gene="sucD"
                     /locus_tag="PXB38_001532"
     CDS             6430..7299
                     /gene="sucD"
                     /locus_tag="PXB38_001532"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL5353845.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7370..8815)
                     /locus_tag="PXB38_001533"
     CDS             complement(7370..8815)
                     /locus_tag="PXB38_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL5353846.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGMFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
     gene            complement(8920..9906)
                     /locus_tag="PXB38_001534"
     CDS             complement(8920..9906)
                     /locus_tag="PXB38_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL5353847.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLALKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGVFFKR"
     gene            complement(9897..10535)
                     /locus_tag="PXB38_001535"
     CDS             complement(9897..10535)
                     /locus_tag="PXB38_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL5353848.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNISN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSPDMPENGDYSLGVQFAQKVEIICD"
     gene            complement(10596..10974)
                     /gene="rnpB"
                     /locus_tag="PXB38_001536"
     ncRNA           complement(10596..10974)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXB38_001536"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT         3493 a         2403 c         2245 g         2998 t
ORIGIN      
        1 cacgacgata gtcgggccaa atggtggagg aaaatctacc ctgcttaaaa ttttgctaaa
       61 attacttagc ccaaataaag gaaaggttat tcatcaaaaa ggactcaaaa ttggctatgt
      121 accacaaaaa ttgcatttag aaccctcgat gcccattact gtttatcgat ttcttgcgct
      181 aaaaccacat actaccaaag aaatgattaa ccaagcacta gatctgtttt ctattaccca
      241 tctcactgaa aatagtatgc aaaaattatc gggtggtgaa cttcaacgtg tattgctggc
      301 tcgggcaatt ttagatcgtc cgcaactttt agtgttagat gaaccaatgc aaggcgttga
      361 tattataggc caaaccgaac tctatcaatt acttaataaa acaagggatc tccttaactg
      421 tgctatttta atggtctcac acgacttaaa tattgtgatg gcgaatacag atgaagtgct
      481 ttgcatcaat aaacatattt gttgtgccgg aagccccgaa gtcattacac acgatccgag
      541 ctttatccat ttttttggcg accaatttgc acgtaatgtt gcattttatt cacataaaca
      601 taaccatcac cataatttac atggcgatat ctgccttggt gaatgtagtt gtgagcactg
      661 ataggcgtcc tttttaccaa atgtttaaaa tttgtaaaaa taatgctaaa aataaccgct
      721 tgcagcacaa gatttatcta aaaatcagac ttacttcaca ttttatttgc ttaaattgga
      781 gtataataag ggcgtgattt cataccacaa acaggtcagg tctttatgca atatacacat
      841 tttgatgatt ggcttgcatc atctgcatta ggcggtgcaa accaatctta tatagaagaa
      901 atttatgaac agtatctaga aaatccagca aatgttgatg aaagctggag aaacatcttt
      961 gattcatttc ctaaaactcc ccaatttgaa caagctcaca cccctattcg tgactatttc
     1021 cgtaaattag cccgtgaaca gcaacctcaa tccgtcacta ttattgaccc agaagcaggg
     1081 gcgaaacaag ttcgcttact gcaatggatt aacgctcacc gtttccgtgg ctatttagag
     1141 gcaaaactag acccaattaa ctattaccgt tggaaaacct ccagcgtgcc tgaattggac
     1201 tacaaatatc acggcttcac cgatgaagat ctcaacgaaa cttttacggt cggtcgctat
     1261 gtctatgata aagacacaat gaagctcagc gaactggata aagccctaaa agaaacttat
     1321 ttagggccta ttggtttaga atttatgcac gttcaagata ttgaacaacg caactggctt
     1381 caagccaaaa tggaaagcgt gctaaacaaa ccgctgttca ccaaagcaga aaaactgaat
     1441 ttattaagcg aattgaccgc tgccgatggt ttagagcgtt acttaggggc aaaattcccg
     1501 ggggcaaaac ggttctcatt ggaaggcagt gatgccttta ttccgatgat gaaagaaatt
     1561 atccgccacg cttcccgtca aggtatgacc gatgtggttt taggtatggc acaccgtggt
     1621 cgtttgaata tgttagtgaa cgtatttggt aaacgcccgg cagaattgtt tgatgaattt
     1681 gccggcaaac acgctgatga aagccgcacg ggcgatgtga aataccacca aggtttctcc
     1741 tcaaactttg ccgtagatga taaaaacgtt caccttaccc ttgctttcaa cccatcgcat
     1801 ttagagattg ttagcccggt ggtaatcggc tcagtgcgtg caagacaaga acgtatgcgt
     1861 gataccgaac acgaaaaggt gcttgcggtg accgttcacg gtgactctgc agtggcaggg
     1921 caaggtgtag tgcaagaaac cttaaatatg gcaaatgctc gtggctataa agtaggaggc
     1981 actatccgta ttgtgatcaa caaccaaatc ggatttacca cctctaaccc aaatgacacc
     2041 cgctccaccg aattttgtac cgacattgcc aaaatgattc aggcaccgat tattcacgtt
     2101 aatggtgatg atccggaagc tgttgccttt gcagcgagaa tggctgtgga atatcgtact
     2161 aaatttaaac gtgatatttt tattgattta atctcttacc gtcgtcacgg tcataatgaa
     2221 gccgatgagc ctttagcaac tcagccgatg atgtatagca tcatcaaaaa acacccgaca
     2281 cctcgcaaag tctatgcgga tcgtttaatt accgaaggtg ttttaaccaa cgagcaagaa
     2341 atcgagatgt taaacctgta tcgtgatgcc ttagacaacg gcgaatgcgt tgtgccggaa
     2401 tggcgtgaaa tggatatggc agcggtcgat tggctacaat atctcaatta cgactggact
     2461 gccctatacg aaagtaaatt ccctgaagaa cgattcttaa ccattgccaa acgggtgtgc
     2521 gaatatccgg cttcgcttaa agctcattct cgggttgaaa agatctacac tgatcgcaaa
     2581 gagatgtatg aaggcaagaa attattcgac tggggtatgg ctgaaacaat ggcatacgct
     2641 actttgttag acgaaggcac acatgttcgc ctttcaggag aagatgccgg acgtggcact
     2701 ttcttccatc gccatgcggt aatccataac caaaatgatg gaacaggcta tgtgccactt
     2761 actcaactgc acgccaatca agggcgtttc caagtatggg attccgtact ctctgaagaa
     2821 gcggtactcg cctttgaata tggctttgcc actaccgacc cgaaaacact gaccatttgg
     2881 gaagctcaat ttggagattt cgctaacgga gctcaaattg ttatcgacca atttatcagc
     2941 tcaggcgaac aaaaatgggg cagaatgtgc ggtttagtga tgttattacc acacggctat
     3001 gaaggtcaag ggccggaaca ctcctctgcc cgagtggaac gctatttaca gctttgtgct
     3061 cagcaaaata ttcaagtttg cgtgccatca acaccggcac aggtttacca tatgttacgc
     3121 cgtcaagcga tccgcaaaat gcgtcgccca ttggttgcaa tcacaccaaa atcattgcta
     3181 cgccacccac ttgcggtgtc atctcttgat gaattgatta acggttcatt ccaaaatgtg
     3241 attggcgagc tcgataatat cgatcctaaa caagtcaaac gtgtggtgat gtgttcgggt
     3301 aaagtgtact acgacttaat tgaaaaacgc cgtgaaaata accaaacgga cgttgccatt
     3361 attcgtatcg aacagctcta cccgttccca cttgaagaaa tgcaacaaat tctcgagcct
     3421 tacgctcacg ttaaagactt tgtctggtgt caagaagagc cactaaacca aggtgcgtgg
     3481 tattgcagca agcacaattt tgaggcttct ctgccggaag atgcaaaatt aacttacgca
     3541 ggcagaccgg cttctgcttc accggcggtg ggttatccat cgttacacgc aaaacaacaa
     3601 aaacaacttg ttgaagatgc tttaacgatc gctgaataat aaaatgggcg tatatacgcc
     3661 ctacaagcgg ttcactttta accaaatttt acaatttacg ctgtcggagt tttaaaactc
     3721 tctcgaaaaa aggaataagt tatgaccatt gaaattttaa cccccgattt acccgaatct
     3781 gttgccgatg cgaccgttgc cacttggcat aaaaaagtgg gcgacaatgt aaaacgtgat
     3841 gaaattttag tcgaaattga aacagacaaa gtcgttttag aagtaccggc ttcaagcgat
     3901 ggtattcttg cagaaattac ccaagaacaa ggtgctactg ttgtatccaa acaatctctg
     3961 ggtaaattag tagtagctaa agccggtgat attagctctg caactattga gcaaaaaaca
     4021 gaatccacgc catcagaccg caaacacgca gcaattgaaa acagccacgc gaacgctgat
     4081 gatcaagggc ctgcgattcg ccgtttatta gccgaacacg acttacaagc cgctgatatt
     4141 caaggcagtg gtgtaggcgg cagaatcacc cgcgaagata ttgaaaaaga gattgccaaa
     4201 cgagtgcaaa tcaaccaagt aaaagggtct gcaaccagcc aaaacaccgt tagcactgta
     4261 gcatttaaca gccgtagcga aaaacgtgtg ccgatgacac gactccgcaa acgtattgcc
     4321 gaacgcttac tagaggcaaa aaacaccact gcaatgctca ctacttttaa cgagctggat
     4381 atgcaaccaa ttatgaattt acgcaaaacc tatggcgaaa aattcgaaaa acaacacggt
     4441 gtgcgtttag gctttatgtc gttctacatt aaagccgtgg ttgaagcatt aaaacgctac
     4501 cctgaaatca atgcctccat tgatggcgat gatgtggttt atcataacta tttcgacatc
     4561 agcattgcgg tttctacccc acgaggctta gtcacacctg tgttgcgtga ttgcgacaaa
     4621 atgagtatgg cagatattga gaagaaaatt aaagaacttg ccgaaaaagg gcgtgacggc
     4681 aaattaaccg ttgaagactt aaccggcggt aactttacca tcaccaacgg cggggtattc
     4741 ggttcattaa tgtccacccc aattatcaac ccgccacaaa gtgcgatttt gggtatgcac
     4801 gctattaaag accgccctgt cgccattgac ggacaagtag tgatccgccc gatgatgtac
     4861 ctagccttaa gctatgacca ccgtttaatt gacggtaaag aatctgtcgg tttcttagtg
     4921 gcagttaaag agttattaga agacccaacc cgtcttcttt tggaaattta atcgaaaata
     4981 tgaccgcttg tacttttagc tacaagcggt ctgtttttaa taaaatttga caaaatccga
     5041 taaacgctct atttgagttc ccttctgagc cacctgagcg actttgaatt tgtaggaaaa
     5101 atttagtgtt tgagcttaca aggcaagcga gttataaatt tttccgtcaa gcaaattcaa
     5161 actaagcgaa gaaagtggcg aagcagggtg tgctttcttt tggttacttt tctttgcaca
     5221 agcaaagaaa agtaacataa aaaaaaccaa acgaggaaac tctatgaatc tacacgaata
     5281 tcaagcaaaa caaatattca aacaatacgg gcttcccgta agccaaggga ttgcttgcaa
     5341 aacggcagag gaagccgttg aggcaattaa acaactacaa ggtgaacaat gggcgataaa
     5401 gtgccaaatt cacgctggtg ggcgtggcaa agccggcggg gtgaaactgg ttcgcaatga
     5461 agccgaagtg cgtgaatttg ccgataaatg gctcggcaaa cgcttagtta ccttccaaac
     5521 cgatgctaat gggcaaccgg ttaatacctt atatttagaa gaaacctgca atatcgaccg
     5581 tgaattgtac ttaggtgcag tggttgatcg ctccgctcaa aaagtgattt ttatggcatc
     5641 aagtgccggt ggtatgaata ttgaagaagt agcggagaaa acccctgaat taattcacaa
     5701 agcggtaatt gacccactca ccggtgggca gggttatcaa gggcgtgaat tagcatttaa
     5761 attaggcttg aaaggtgatg aagttaaaca atttgcggat attttcgtga aactggctaa
     5821 cctatttgtt gaaaaagatt tagctttatt agaggtaaat ccacttgtca tcactaaaga
     5881 agggcaacta ctctgcttag atgcaaaaat gtcgattgac agcaatgctc tctaccgcca
     5941 cccagaactt aaagagttgc aagacccatc gcaagatgac gaacgtgaag ctgaagcgga
     6001 aaaatggaat ctcaactacg ttgcactaga tggcaatatc ggctgtatgg taaacggtgc
     6061 ggggctggca atggggacga tggatatcgt caaactttat ggtggtaaac cggctaactt
     6121 cttagacgtt ggcggtggtg caaccaaaga gcgtgtagca gcagctttta aattgatttt
     6181 atctgatccg aatgtgaaag ccgtgttagt caatattttt ggtggtatcg tccgctgcga
     6241 tttgattgct gatggcgtca ttgctgctgt aaacgaagtc gtgaatgtgc ctgttattgt
     6301 gcgtttagaa ggcactaatg ccgcacaggg gcgtgagatt ttagccaata gcgggctgag
     6361 tattctagcg gcatcatcat taaaacaagc ggctgaatta gcggtaaaat ctgcaaatta
     6421 ggaggaaaaa tgtcgatttt aattgataaa aacacaaaag taatttgcca aggtttcacc
     6481 ggcggacaag gtactttcca cagcgaacaa gcccttgctt atggcacaca attagtcggc
     6541 ggagtttcgc cgaataaagg tggcacaacc catttaggct taccggtttt caacaccgta
     6601 cgcgaagcgg tagaagcaac cggtgcaact gcaaccgtta tctacgttcc ggctcccggc
     6661 tgtaaagatg ctattttaga agccattgat gccggcatcc aactaattgt ctgtattact
     6721 gaaggcattc caaccttgga tatgctacaa gttaaacaac gtctaaacca aaccggcgtg
     6781 cgaatgatcg gtccgaactg cccgggtgtg attacccctg atgagtgcaa aatcggcatt
     6841 atgccgggca atatccacaa aaaaggcaat atcggtattg tttctcgttc gggtacttta
     6901 acctatgaag cagttaaaca aacaactgac gaaggctttg gtcaatctac ttgtgtcggt
     6961 atcggtggcg atccgattcc gggatctaac tttattgaca ttttaaaact gttccaagac
     7021 gatcctgaaa ctgaagccat tgtgatgatt ggtgaaatcg gcggctctgc cgaagaagaa
     7081 gcggcagctt tcatcaaaga aaatgtcacc aagcctgtag tcagctatat tgccggtgtc
     7141 accgcaccaa aaggcaaacg aatgggacac gccggtgcga ttatcagtgg cggcaaagga
     7201 accgccgatg aaaaattcaa aatccttgaa gatgccggtg tgacaaccgt cagaagttta
     7261 gccgaaatcg gttcagctct tagaaaaatt ttaggctaaa ctaaaagttc aagcggtcat
     7321 atttacccat ttttttgtaa atatgaccgc ttgttttttt gctattaaat tactctttcg
     7381 atttccaaat taatgggtca acacctttat ggataaggtc ttgatgttct tcaattctaa
     7441 acactggctc tttgccactt ttcacttggc gaagatagtc ttttaaaata atccagacaa
     7501 tcggagcaag aattaagata gccaccaagt taattaccgc cattgatgcc atcactgtat
     7561 cggcaaatgc ccatacaatc cctccgtctc ttactgcacc gaagtacaca aagaataaaa
     7621 cgatggcacg gaatccccac acaaaccacg gactgttttt aatgtagcgg atattagttt
     7681 ctgcataagc atagttaccg ataatggatg tgaagcaaaa cagtaaaatc acaaatgcta
     7741 aaaagtgtaa accaaattca cctaaatgga attgtaacgc actttgagta agtgaaatac
     7801 ctcttaaagt ttcaccacca tagttatttg acataagaat gatcactgca gtacaagtac
     7861 agactacaat tgtatctaca aatacgccca acatttgaat taagccttga cttgccgggt
     7921 gtttcgcatc agaagtcgct gcagaatttg gtgcagatcc cataccagct tcgtttgaga
     7981 acaagccacg tttaatcccc attagcatag ttttggatac caatgctcca aacattccac
     8041 ctgcagcagc agaaaaatca aaggcgcttt caataattaa agagattata cttggcactt
     8101 tttcaatatt catacctaaa ataattactg caataatcaa gtagaataat gccatcattg
     8161 gaacaacttg agcagaaact ttaccaatac gcttgacccc tccagaaata attaaccctg
     8221 taatcaccac taatgtcatg cctacgtaga ctgggttcca atcccacgca tttttggttg
     8281 cttccacaat agagttagat tgcacagcat taaaagcaaa accaaaggtg aagataagcg
     8341 tcactgcaaa agcaatagca agagaaggca gttttaaacc acgagtgatg taataggctg
     8401 gcccaccacg aaacattccg tttggatctt tggttttata caactgagcc agtgaagact
     8461 cagcaaaggc ggaactcatt cccattaagg cggtaatcca catccagaat accgcacccg
     8521 gcccacccaa agcgattgca gtagctaccc caccaatatt accaacccca acacggctgg
     8581 ctaatccagt agtaaaggct tggaacggag ttaatgattt cccttccgta gaacgtcctc
     8641 cccacatttc acgtaaactt tgcggaagaa gacgcagctg gacaaaacct gttgtaagag
     8701 tgaaaaataa ccctgcaccg agcaatagga taatcgttac atcccaaagt ggaccgtcga
     8761 ttgtgttcac aatccaagtc agtacactct caaaaaatag aataattgaa tccataaaga
     8821 cctcttaatt gaaaataaaa cttccacatt gtaaccgatt taatattttt aaaaagtttt
     8881 tttaatactt ttaataaaaa tttttaataa cttattaatt tagcgtttga aaaaaacgcc
     8941 tgtaccagca tcaatgaaac tactgtgaaa taataccatt ccaaatagaa ttaatgcgag
     9001 tccaagtgta aattttaata tccaaacgat atttcgatta atttgagctg aaaaatacca
     9061 ttggctaacc ttaactgcct tatttctcgc aatgataaca agataagcaa ataagcttaa
     9121 agtcagccct gttcctactg ccatagctaa tgctgaaata accccccaag catagagatt
     9181 gagcgtataa gaaagaaata aaacaagaat agcgccagag caaggccttg agccaatact
     9241 taataccaac atcagctgtg ctttccaatc tctcacttgt tgcatttcat ttgaagtcgg
     9301 taaatgttta tgcctacagc tacaattttc ggtatgaata tgccctttct gcgtgacaag
     9361 cggtaatttt ccagcttttt tttgcgaaat acgaatggat ttaatgatag gctttcgcgc
     9421 tctgttcacc gttcgataca cctggtaaca ccagtaaatg ccgaacaaga tcatcaaacc
     9481 aaagctcccc cgctcaaccc attttagggc taaattaaaa tattggcgag agagagtaaa
     9541 aatcaccaca atcaccgtca ccaatgaaat tgccactaag ccctgcacca atgctgaggc
     9601 aaaagtgatt ttcatcgcct gatttaattt tgttttttca aaagaaagat aactgctcag
     9661 aataaatttt ccgtgaccag gcccaactgc gtgaaatact ccatataaaa aactaataaa
     9721 tactaaggta ataccggctt tactttgatt ttcagctaat tcattgagcg aagcggaaag
     9781 ctgtaaatta aagttttttt gccattccat cactttaaac aatatcattg gataaagctg
     9841 ataaagagca aataggctca aaaatcctat cactatcatt ccccaatatg ttgcttttaa
     9901 tcgcatataa tctccacttt ttgagcaaat tggacaccaa gagagtaatc tccattttca
     9961 ggcatatccg gtgattggtt tttatccaaa ccggaagcat ataagcgtaa cttactatct
    10021 acttgaggtt gcaccaatgt tgctttacaa cttgcattac tgatattgac atcagcaggg
    10081 cgattatatt ccatcgcaat ataataactc ggttcataag tatagaatct cactttactc
    10141 tgctttaatt cgtgaggttt agctaaatga aaagtaatat aaaaaatcac tctgttattc
    10201 ttgatttcaa agcgagtcgc tgtgggcttt gtcgtaaatt ttatcggctg attttgacta
    10261 tcatataagg tgctaaaata atgattttgc aatgcggttt gcaccatttc tgcagtgata
    10321 ttctgctgag ttttttcttt atcttggcta tttttcactt cataaattaa ctcagaagaa
    10381 gcaatttcat ctagcatcca ttccatttgg aaagatttca acattgagcc ttccacaata
    10441 acattcgttt tcaaatcaac aaatgaatgt gggtgagaaa aaactggcat tgaatataat
    10501 gcaattaacg tgataatcgt cttaataaat ttcatattta ctttcactat aaaataaaaa
    10561 agcgaacaag ttccccctgt tcgcatttca agaatttagt gagttggtcg ataagccgag
    10621 ttctgtcgtg gacaatcatt cctctagacg tacatttaca catacgctca agcaacctac
    10681 ccgaactctc agcgggccac cgattgagtt cctatttggt cttgctacga gtggagttta
    10741 ccctgctgtg gaatgttacc acccacacgg tgcgctctta ccgcaccctt tcacccttac
    10801 cgacaaagcc ggcggtctgc tctctgttgc actggtcgta ggctcacgcc ccccggacgt
    10861 tatccggcac tctgccctgt gtagctcgga ctttcctctc gtttacttgt cccccagttt
    10921 acgttttcac gaatttagag gcttcaataa accagcgatt gcctaaccaa ctcagcacta
    10981 gagtataatg ctttcgcaaa aaattgcaag gaaataaccg cttgtagtta ttatggcaaa
    11041 ataaaaaagg attaagttca tttaaaaact taatcctctt cgctttaatt cactcgtaaa
    11101 aattacgcac gtttgaagtc taagtgaacc aattaaaaa
//
LOCUS       DANLUT010000079        11114 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLUT010000079 DANLUT010000000
VERSION     DANLUT010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11114
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            73..1581
                     /locus_tag="PXB38_001537"
     CDS             73..1581
                     /locus_tag="PXB38_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL5353849.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
     gene            complement(1644..1865)
                     /locus_tag="PXB38_001538"
     CDS             complement(1644..1865)
                     /locus_tag="PXB38_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5353850.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(1887..2321)
                     /locus_tag="PXB38_001539"
     CDS             complement(1887..2321)
                     /locus_tag="PXB38_001539"
                     /inference="COORDINATES: protein motif:HMM:NF016064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5353851.1"
                     /translation="MTAVLVGLIALLAWPLSSAAGRNFGLGITTPSANLVQYFVTGEV
                     KFINWAVFLVLGILIGSFVAAKFSNEFRFRVPDATTMLRSAGGGALMGIGASLAGGCS
                     IGNGLVETAFFSWQGWLSLPIMILGTFVGAYFTIIRPQRLKG"
     gene            complement(2318..2914)
                     /locus_tag="PXB38_001540"
     CDS             complement(2318..2914)
                     /locus_tag="PXB38_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5353852.1"
                     /translation="MLITGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVAFLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIVYAGGCATGTWYRAGEG
                     LIGSWVALIVYGLFSASMRTGVLAPLNQELKSNVIEHRTIYETFGISPWVLVFILSVI
                     TFALTFYHLRKPRGKTITLKPRKTGLAHILFEKRWHPF"
     gene            complement(3023..4357)
                     /locus_tag="PXB38_001541"
     CDS             complement(3023..4357)
                     /locus_tag="PXB38_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL5353853.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFHVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALLSTLISTFLIGALIYGVAKLCGLEIGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQAPTLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLRIMTWGGLRGGLALAMALSVPAGAAMVSSSEGELDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRRVALNKLGGPDDLIPHI"
     gene            complement(4468..5616)
                     /gene="dapE"
                     /locus_tag="PXB38_001542"
     CDS             complement(4468..5616)
                     /gene="dapE"
                     /locus_tag="PXB38_001542"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL5353854.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKRGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTD
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYIQFNLRYCTEVTDEIIKAKV
                     TEMLEKQGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVAKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNTTIHKVNECVSVDDLANCGEIYYQILEKLLANA"
     gene            complement(5746..6093)
                     /locus_tag="PXB38_001543"
     CDS             complement(5746..6093)
                     /locus_tag="PXB38_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL5353855.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            complement(6093..6950)
                     /gene="folP"
                     /locus_tag="PXB38_001544"
     CDS             complement(6093..6950)
                     /gene="folP"
                     /locus_tag="PXB38_001544"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL5353856.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            complement(7059..8021)
                     /gene="rluC"
                     /locus_tag="PXB38_001545"
     CDS             complement(7059..8021)
                     /gene="rluC"
                     /locus_tag="PXB38_001545"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL5353857.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRIKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     DSMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDVEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            8130..9033
                     /locus_tag="PXB38_001546"
                     /pseudo
     CDS             8130..9033
                     /locus_tag="PXB38_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
     gene            9131..9628
                     /gene="rraA"
                     /locus_tag="PXB38_001547"
     CDS             9131..9628
                     /gene="rraA"
                     /locus_tag="PXB38_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL5353858.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIADVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYIYADLTGIILSQELLDL
                     SDISE"
     gene            complement(9676..11037)
                     /locus_tag="PXB38_001548"
     CDS             complement(9676..11037)
                     /locus_tag="PXB38_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL5353859.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYLYIHQLGVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKRDVLNIATSFYLPEDDVDKLREAARVLLQQSQEYNAALK
                     ILQ"
BASE COUNT         3279 a         2501 c         2155 g         3179 t
ORIGIN      
        1 aaaaatctac aacacctata attctcttcg gattaattac ctatcttatt tctaatttat
       61 gaggattcta ttatgtctaa atgtcctgtt acacatttga caatgaacaa cggtgcacct
      121 gttgttgata accaaaacag cttaacagcg ggtccacgtg gtccattatt agcgcaagat
      181 ttatggttaa atgaaaaatt agcgaacttc gtgcgtgaag tcattcctga gcgtcgtatg
      241 cacgctaaag gttccggtgc gttcggtact ttcactgtaa ctaacgacat cactaaatac
      301 actcgtgcgg caatttttag ccaagtcggt aaaaaaactg aaatgtttgc tcgtttcacc
      361 accgttgcag gtgaacgtgg tgcggcagat gctgagcgtg atattcgtgg tttcgcatta
      421 aaattctata ccgaagaagg taactgggat atggtgggta acaacacccc tgtgttcttc
      481 ttacgtgacc cacgtaaatt cccggattta aacaaagcgg ttaaacgtga cccacgcacg
      541 aatatgcgtt ctgcaactaa caactgggat ttctggacat tattaccaga agcatttcac
      601 caagtgacta ttgtaatgag tgaacgtggt attccggctt catatcgtca tatgcacggt
      661 tatggctcac atacttatag cttcatcaat gcagctaatg agcgtttctg ggtgaaattc
      721 catttccata cacaacaagg cattaaaaac ttaactaacg aagaagcagc cgctattatc
      781 gctaacgatc gtgaaagtca ccaacgtgat ttatacgaag cgattgagcg tggcgatttc
      841 ccgaaatgga aaatgtttgt tcaaattatg cctgaaactg atgcagataa agtaccatac
      901 cacccgtttg acttaaccaa agtatggcca aaatcagact acccattaat tgaagtgggt
      961 gagtttgaat taaatcgtaa ccctgaaaac ttctttgctg atgttgaaca atctgcgttc
     1021 gcaccaagca acttagtgcc gggtatcagc gtgtctccgg accgtatgtt acaagctcgt
     1081 ttattcaact atgcggatgc tcaacgctac cgtttaggtg tgaaccacca ccaaatccct
     1141 gtaaacgctc cacgttgccc ggttcatagc aacgctcgtg acggtcaagg tcgtgtggac
     1201 ggtaactacg gtagtaccat tcactacgaa ccaaacagct tcggcaaatg gcaagaacaa
     1261 gctcaatatg cagagccacc actgaaaatt aatggtgatg cagcccactg gaactatcgt
     1321 gaagatgatg ctgactactt cagccaacca cgtgtattgt ttaatatgat gaatgatgaa
     1381 caaaaacaag cattattcaa taatactgct gcaggtatgg gcgatgcatt agacttcatt
     1441 aaataccgtc atattcgtaa ctgctatgcc tgtgatccgg catacggtga aggtgtggca
     1501 aaagcattag gtatgacggt tgaagatgct attgctgcaa gagcaacaga cccagcatta
     1561 ggtcaaccgg gtttactcta atccttagtg aatacaaaac tcaaagcaaa agctctacga
     1621 aagtagagct tttttactgc taattattta accaccgtaa tttcccacaa ggcatcgcca
     1681 agttgttggt aatcggtaac ttcatagcct tcctcttccg cccaatttgg aatggcttcg
     1741 gttgcttgag tgcagtcaaa ttcaatcgtt aagctatcgc ctttattcaa ttttgccatc
     1801 gccgctttgg cttcgactaa tggaaacggg cagacaagcc ctgaggcagg taaacgtacg
     1861 ttcatcttta ttactcctta aaaaaattaa ccttttaaac gctgtgggcg gataatcgta
     1921 aaatacgctc caacaaatgt accgagaatc attattggta atgaaagcca gccttgccaa
     1981 gagaagaaag ctgtttcaac taatccgttc ccgattgaac aaccaccggc aaggcttgca
     2041 ccgattccca ttaatgcacc gcctcctgca ctgcgtaaca ttgtggtcgc atctggcact
     2101 ctgaaacgga attcattcga gaactttgca gccacaaacg agccgatcaa aatccctaac
     2161 accaaaaata ccgcccagtt aataaattta acttcaccgg ttacaaaata ttgaaccaaa
     2221 tttgcacttg gcgtagtaat gcctaagccg aagtttctac cggcagcact gctaagaggc
     2281 caagcaagca gtgcaattaa gcctaccaac actgccgtca aaacgggtgc caacgttttt
     2341 caaacagaat atgagctaaa ccggttttgc gtggttttaa cgtgatggtt ttacctctcg
     2401 gttttcttaa atgatagaag gttaatgcga atgtaattac actcagaata aacactaaca
     2461 cccaagggga aataccaaat gtttcataaa tcgtgcggtg ttcaattaca ttgcttttta
     2521 gctcttgatt aagtggagct aacacaccgg ttcgcataga agcagaaaac agcccataaa
     2581 caatcagagc aacccaactg ccaattaaac cttcaccggc tcgataccaa gtaccggtag
     2641 cacaaccgcc tgcgtaaaca atgccaatac caaataaaaa tgccccgata attaccgcaa
     2701 gcaatggtaa atcttctgcc ggtgagctaa aagagccggc ttcatataac agccaaatgc
     2761 cgatagattg cactgtaatc gcaattaaaa atgcgacaaa catacggctg tttttggtga
     2821 catagagatc acgaaatgca ccggtgatgc aaaatcgccc tctttgcatc acaaatccaa
     2881 gcagaaaacc gcataacaat cctgttatta acataaaaaa tacctctcaa caaataaatg
     2941 tgagaggtat ttaaatataa agccgtctag atggctaata atctttagcg aaatgatatg
     3001 ttattcagtt atatcaatgc cattaaatat gcggaataag atcatcaggc ccgcctaatt
     3061 tattcaacgc cactcttctt gggtcaacta acttagattt ctttatcatc ggttcaaccg
     3121 ttgaaccttg tactaaaatt gagaaagtga ccaccgcata agtcattaat agaatcaaat
     3181 ctcgcacatc aagctcgcct tccgaacttg acaccatcgc agcccctgcc ggtacggaaa
     3241 gagccatcgc aagggctaat ccaccgcgta atccgcccca agtcataatg cgtaaggtgt
     3301 aaggattata agtgcggaag cgttttaaca cttggtatgg aatccacagg ctgatgtagc
     3361 gtgcaagcaa acaaattgga attgctgcca acattaacac cccaccaata aaggtgaaat
     3421 caactaacag tgtgcttaaa ccgataagca ggaataacag atagtttaat gaatggtcga
     3481 tcatctccca gaagtgatca agatattttt ggctctgttc ggagaaaccg gaacggcgag
     3541 tccagttgcc aatcataata ccggcaacga ccattgttaa tgcaccagaa acgtgtaagt
     3601 agttcgcaat cacaaagcca acggttggaa tggttaaggt gattaagatc tcaaggcttc
     3661 cgtcatcggt tgcagaaata aatttatgtg ccacaaaacc ggttaataag ccaaaaacaa
     3721 taccgcctac cgcttcttgc aagaacagtc cggtaatgcc actaagtgtt ggagcttgtc
     3781 cgccaaaagc cacagcaaag atagtggtaa aaatcactaa gccgatacca tcattaaaca
     3841 acgattcccc ttcaacatgc attgaaaggc gttttggagc tttcaagctt ttgataattg
     3901 ccaatacggc aatcgggtcg gttggcgaaa tcagtgagcc gaacaacaag caataaacaa
     3961 aaccgatctc caaaccacat aattttgcca cgccataaat caaagcaccg attaagaaag
     4021 tggaaattaa ggtagaaagt aaagcataaa ccgcaatttc tcggcgttgt tctttcatta
     4081 acggtagttt aattccaagt gaaccagcaa acagtaagaa accaagcatt ccgtttagta
     4141 ggaagctttt aaaatcgagc tgttcaaaaa tggaaatggc aagtttatca acatgaaacc
     4201 agccaagaga accgaaggta agaataagaa gggagccgac aagggcggag gctgtaatag
     4261 caatggtggt ttgaatattt tcgtttaatt ttcgggtaaa aaacgaaata aacatcgcaa
     4321 gcccaaacag caggcagata tacgagtaga gttgcataac attttcctat aaatataaaa
     4381 actgctgcta gtgtaaactc tgtttaacag aatagctacc taaaaaatag gcagaataca
     4441 atttgataac attctgccta tttttggtta tgcgtttgcc aataattttt ctaaaatttg
     4501 ataataaatt tcaccgcaat tcgctaaatc atccacactg acacattcgt ttactttatg
     4561 aatagtggta ttaagtggtc caaattccac cacttctgcc cccattaacg caataaaacg
     4621 cccgtctgaa gtaccgccgc cggtgtctaa ccgaggcgta atttttgcca cattttcgac
     4681 cgcttgtaat gcagcttcta ccaacttccc attgccggca aggaacggtt tgcccgacaa
     4741 attccaactt attcggtatt ttagcccctg tttttcgagc atttccgtca cttttgcttt
     4801 aatgatttca tcggttactt cagtgcaata acgcaagtta aactggatat aaagctcgcc
     4861 cggaatcaca ttattgctac ctgtgccggc tttgatattg gcaatttgca aactggtagg
     4921 cgggaaaaat tcgttaccgt tatcccactg gtaagtggtc agatcggtta aaaaacccag
     4981 tgacgtatgc accggatttt ccgccaaatg tggataggca acgtgccctt gaatgccctc
     5041 gatatagaga tctgccgtaa ttgaaccacg tctgccgttt ttaatcacat cgccaaacac
     5101 cttgctacta gacggttcgc ccactaccgc ataatgtacc gcttcattgc gagccattaa
     5161 ggtttcaacc acttttaccg taccgtcttt ggctgctgcc tcttcatcgg aggtaatcaa
     5221 taatgccact ttgcccttat ggtttgggtg atgttgcacg aaagtttctg ccgccacaac
     5281 taacgccgag agcgagcctt tcatatctgc cgcccctcgc ccataaagca ttccatctac
     5341 aatctcagcc gaaaacggcg gataagccca ttggctttca tcgcctaccg gcaccacatc
     5401 tgtatgcccg gcaaacacaa tgcaaggctc tgttttacca ttttccgagc cgtgcgttgc
     5461 ccataaattc aaggtgtcgc caaacggcaa ccattcaata ttaaagcccc gtttttcaag
     5521 acgttgtgca atttcttgct gacagccttt gtcttgtggg ctgatggaat cacggcggat
     5581 taggttctgt gcaagggaga taatttcatt tttcataggt tacaagcggt tgttttgggt
     5641 gaattttttg ctatatatcc tgtaggggcg ggtcctgtgc ccgcccgaac aatcctaaag
     5701 actacggaca ggcacaggac ctgtccctac aagcagggga aaaaattaat taaacgcagc
     5761 cacatactct ttctcattaa aaccaatcaa agcaatatcc tctttaatca caatcgggcg
     5821 tttaattagg gtcggctgtt cggttagcac ttttaatgcc gactcacggt taaggttgtt
     5881 tttaatttcc tcatcaaggt ttcgccaagt ggtgctacgt ttattaacta agttttccca
     5941 accgaatttt gcttccattt ccactaacca atcggcattt aaaccgtcca cacggtaatc
     6001 gtgcagttgt gggttttgat tatgatcttc gagccatttc aaggcttttt ttactgtgtc
     6061 gcaattttta atgccataaa ctaaggttgt catcattttt cctcattatc tgattccagc
     6121 attgcctgcc agatttttaa cgcatcggcg gtttctgcca catcgtgcac ccgtaaaatt
     6181 ttcgccccat tttgagcggc taataacgcc cctactacag agccaagtag ccgttgttct
     6241 accggtttat ctaacaccgc accaatcatt gatttacggg aaagtccggc aagcacaggg
     6301 aagcctgaat ccacaaaggc tttaaggtgt ttcaataatt ggtaattgtg tttcacgctt
     6361 ttaccaaagc caaaaccggg gtctaaaata atgtgttctt tgggaatgcc tgcggtgatg
     6421 cactcgaaaa tccgttgatt taagaaatct gccacatctt ccaacacatc atcatagtgc
     6481 ggattttgtt gcattgtttg cgggttgcct tgcatatgca ttaaacaaac cggcaagccc
     6541 aattctactg ccgctgccaa cgcattcggc tcggttaagg ctcgaatatc gttaatgata
     6601 tccataccga cttttgccga ctctttgaat acttctgctt tggagctatc aaccgaaatc
     6661 aagcaatcaa aacggctgcg gatcgcctcc accaccggca caacacgctc taattcttgt
     6721 tctaagctca caatcgccgc attagggcgg gtggattcac cgccaatatc aataatgctt
     6781 gccccatcag ctaacatttt ttccgcttgg aacaaggctt tatcgaggga aaaaaacttg
     6841 cccgaatcgg aaaatgaatc cggcgtgaag tttaagatcc ccataatttg cggtgtggtt
     6901 aaatctaaca agcggtcatt tttttgaaaa tttttgaaat ggatttgcat atttttgctt
     6961 atattttgtt ggtgcaagcg tccacgcttg tacctctcta tgttgattta cagcacaagc
     7021 gtggacgctt gcgctatctt actctctcat tacgttattt agtaattagc ccttaatttt
     7081 gccaacaccc cttttaaggt tttatccaaa ggtgcggtaa tgaccatttc ttcgccggtt
     7141 ttggggtgtt caaaacgaat agcatgggcg tgcagaaata aacgctgtaa gccaacttct
     7201 ttcattttgc tgtcaaattc cacatcacca tatttgtcat ctaacgcaat cgggtgtccg
     7261 gcatattggg tatgcacacg gatttggtgg gttctgccgg taataggcga ggctttcacc
     7321 aaagtggcat tggcataacg ctcttcaatg ctgaaacggg tttcggacgg tttgccctcc
     7381 tcactcactc gtacaattcg ttcaccgctg gcaagttcgt ttttcagcaa cggggcttta
     7441 atcactttag tgtgagcctg ccattgccct cgcacaaggg caagatagtc tttttgcacc
     7501 actttctcac gtagttgttc gtgcaaggaa cgtaacgccg aacgcttttt tgccaccagc
     7561 aaaatgcctg atgtatcacg gtcgatacgg tgtaccaatt ccaagaaacg agcctgtgga
     7621 cgtaacgcac gcaaagcctc aatcacacca aaacttaaac cactgccacc gtgtacagca
     7681 atacctgatg gtttgttaat tactagcatt gagtcatctt catacagaat ttggctttcc
     7741 agctccgcca ctttgtttaa tttagtcgaa attggggctt catttttttc cgctacacgc
     7801 accggtggca cacgcactaa atcgtcgggc tgtaatttat attcgggctt tatgcgccct
     7861 ttattcaccc gcacctcgcc ttttcgcaca atgcggtaaa tcaaactttt cggcacgcct
     7921 ttgagctttg ccaataaaaa attatctaaa cgctgtccgg cttcatcttc actgatcgta
     7981 aaaaattgaa caccggcact aattactttt tctgttgtca ttatcttgtc ttttagagaa
     8041 aattttgctc taaattctag cacaaaaccg cttagcgagt gaggcaaatt cgctaggctt
     8101 atttttcatt ttaattttaa ggaaacaata tgactgaaaa agtcaccgaa accgccccaa
     8161 atattgacgt ggttgccgaa accgaaaaag taattaacaa agtcagcaca atggatttta
     8221 attccgtatt aaacgagtgg attatccctt atggcaccaa aattttacta gcgattgcga
     8281 tttttgtagt cgggaaattt cttgcccgcc tgattagccg tttactcggc aaagcggcat
     8341 taaaatcaac caaagatgaa atgctgcaaa gttttattgt ctcaatcagc tattttttac
     8401 tgctgttaat tgtggtgatt gcctcgcttt cacaaatcgg cattaacacc agctcgctgg
     8461 ttgcattaat cggtgctgcc ggtttagcca tcggtttatc attacaaaac tcattacaaa
     8521 actttgctgc cggcgtgatg ttgttaatct tcaagccatt tcgcaaaggg gatttaatcg
     8581 aaaccggcgg aatgaccggc gtggctgaac aaatggggct tttagtgttg gaacttcgca
     8641 ccggcgataa caaaaccgtg ttattaccaa acggcaaagt gttttctgac agcatcatca
     8701 actactctaa caacccgaca cgccgtattg atttcacctt tgatatttct tatgaatcta
     8761 actttaaaag aggcgaaaga gattatccaa cgcattttag acgccaatac ttatgtatta
     8821 aaagatccgg cacctgtagt agcagtcggc gctttagcac cgcatagtgt tcaacttgtt
     8881 gttcgccctt gggttcagac gccaaattac tgggcagcat attgggaaat tatcgaacaa
     8941 gtaaaattag cctttggtga agcaggtata tctattcctt acaaccaaat ggaattgcat
     9001 attaaaagcg gttcactaga gaataaagca taagaaaaaa gcctgtaagc ggtctttttt
     9061 cgataaaatt ttgcaaattt tgggcgaagg tttatacttt agctaaataa tctacgaaca
     9121 ggagcatatt atgcgtattg atacctctgc actttgcgat ctttattctg accaagttga
     9181 tgtggttgaa ccaattttct caagctttgg cggtgcttct tccttctttg ggaagattac
     9241 cacggttaaa tgctttgaaa gtaacggttt aattgctgat gttttggaag aagagggtga
     9301 agggcgagtg ctgttagtcg atggtggcgg tgcagttcgt cgtgccttaa ttgacgcaga
     9361 gctggctcaa cttgctgtag ataacggctg ggaaggtatc atcgtttatg gtgcggttcg
     9421 ccaattagat attttggaaa gattagatat cggtattcat gctttagcgc caattccagt
     9481 gggagcagat aacaccgata ttggagaagt ggacacaccg gtcaatttcg gtggcgtaac
     9541 gttcttccct gaagattaca tttacgctga tttaaccggc attattcttt cgcaagagtt
     9601 gttggattta agcgatatta gcgaataaat atttgcaaaa aaataccaaa aaccgaccgc
     9661 ttggtcggtt ttttactact gcaatatttt taatgccgca ttatattctt gagattgctg
     9721 taataaaact cgagcggctt cacgtaattt atctacatcg tcttccggca gataaaatga
     9781 tgttgcaata tttagcacat ctctttttaa atcaccatca ggtaattctt ttaaacctaa
     9841 actaacaaaa tgcatttcga tcttcgatgg ctgtttattt gcatattcat tccaaccatc
     9901 cgtaaactgg cgataacgct gtaaattaat ttgtgtcgtt ctatcaattg gcacgttaac
     9961 tattgtattc actacatcag ccacacccgg cacatttgcg gtcttatcga tctcgctaga
    10021 gacttcattt tgcgcattta cattaatcac tacaatattt ttcaccccaa gctgatgaat
    10081 atacaggtac atctcttcaa tacccataac atcagatatt tccagcacac tggcaagccc
    10141 taaattatcc gttaatccac catcaactaa atggataaag gggcgctctt tactatcttg
    10201 ataaaggctg agtatatgat tcgtttcttc aatatttttt gtaattagtc catcaattgc
    10261 tttttcccta gcactaaatt cttgtggcat actaaaatgg caatttccac cattgttatt
    10321 cagtgtaagc ggcgcaaaaa tcagaggaac agaactagaa gcagcaacag cacgggaaat
    10381 ttctaaatca ttcaaattta aacaaagccc atcaaaggtt tcttgcgtaa aggtcagttt
    10441 ttgaccaata ttcatgtctg ttgcgctaat cacagcaaaa ggtcctttac gatttttcac
    10501 taaatcacca aactttttac catgataaag ggcaaaattt aagcgttctt gcaataaatc
    10561 accacgccca tattgaggag aacttaaacg aggaagattg gataacgaaa acacctctgt
    10621 aataatatct ttttgaaagt ttgcttttaa aaaacgatca gcaaatttag gaatgatatc
    10681 ctttccttcc aacgcaaaat aagtggctaa tatcgatcca cctgatacgc caaaggcaat
    10741 atctatattc tctaataaag tattaccttt atttgtttct ttcaccctta cctttttaaa
    10801 ctcttccaac actccataac caagcgccgc tgctcttgtt ccaccacctg aaaacatgat
    10861 aacaacaata ttaccgtctt ttgcactttc agcgatcaca tttttttgtc gataacctct
    10921 ttcaacattt acctgtttaa ttgtttcaac tggcttataa acaaccaaac tgcaagcaga
    10981 taacactagc gtaaaggcga agatgaaaag ctgttttatt ttgtttagaa aaagcataaa
    11041 aaccctaaat taagatctat ttctacaaat tataaccttt ttagctaaag ataaatgcgg
    11101 tcaaatttgg ccta
//
LOCUS       DANLUT010000080        11106 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLUT010000080 DANLUT010000000
VERSION     DANLUT010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            140..436
                     /locus_tag="PXB38_001549"
     CDS             140..436
                     /locus_tag="PXB38_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5353860.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            426..842
                     /locus_tag="PXB38_001550"
     CDS             426..842
                     /locus_tag="PXB38_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL5353861.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKELLSMNPYRNVEIISVSEFLAETR"
     gene            842..2500
                     /locus_tag="PXB38_001551"
     CDS             842..2500
                     /locus_tag="PXB38_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL5353862.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHRKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2586..3170
                     /locus_tag="PXB38_001552"
     CDS             2586..3170
                     /locus_tag="PXB38_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL5353863.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQY"
     gene            complement(3218..4156)
                     /gene="ttcA"
                     /locus_tag="PXB38_001553"
     CDS             complement(3218..4156)
                     /gene="ttcA"
                     /locus_tag="PXB38_001553"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL5353864.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLDEDDDNNFAEAGMIQFKEVN"
     gene            complement(4219..4932)
                     /gene="ubiG"
                     /locus_tag="PXB38_001554"
     CDS             complement(4219..4932)
                     /gene="ubiG"
                     /locus_tag="PXB38_001554"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL5353865.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            4997..5377
                     /locus_tag="PXB38_001555"
     CDS             4997..5377
                     /locus_tag="PXB38_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL5353866.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5474..8170
                     /gene="gyrA"
                     /locus_tag="PXB38_001556"
     CDS             5474..8170
                     /gene="gyrA"
                     /locus_tag="PXB38_001556"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL5353867.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETSTEE"
     gene            8266..9813
                     /locus_tag="PXB38_001557"
     CDS             8266..9813
                     /locus_tag="PXB38_001557"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5353868.1"
                     /translation="MAAIQQRAELHRQIWQIANEVRGAVDGWDFKQYVLGSLFYRFIS
                     ENFSAYIEQGDESIDYAAYSDEEIDAFGIKEDAIKSKGYFIYPSQLFKNVVKNANTNN
                     NLNIELADIFADIEASAVGFDSEKDIKGLFADFDTKSNRLGNTVEDKNKRLAAVLKGV
                     ESLNFGDFAENQIDLFGDAYEYLISNYASNAGKSGGEFFTPQNVSKLIAQLALYGQSA
                     VNKIYDPACGSGSLLLQAKKQFDDHLIEEGFFGQEINHTTYNLARMNMFLHNINYDKF
                     HIELGDTLINPKLKDDKPFDAIVSNPPYSIKWIGSDDPTLINDERFAPAGILAPKSKA
                     DFAFILHALNYLSAKGRAAIVTFPGIFYRSGAEQKIRQYLIEQNVVESVIALSANLFY
                     GTSIATNILVLSKHKTDTKTQFIDASDLFKKETNNNVLTDEHIAQILKLFADKADVEH
                     FAKSVDNRQIAENEYNLAVSSYVEAKDTREVINITELNKEIRKTVAKIDRLRADIDAI
                     VAEIEQQ"
     gene            9889..11100
                     /locus_tag="PXB38_001558"
     CDS             9889..11100
                     /locus_tag="PXB38_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5353869.1"
                     /translation="MSNSIIEKLLNGAEVEWKPLGEVAELKRGKTITAKDKTEGNIPV
                     ISGGQKPAYYTGEYNREGETITIAGSGAYAGFLMYWNEPIFLGDAFSVKPDLDILITK
                     YVYHFLLSKQQWIFNLKKGSGVPHVYPKDLAILEIPIPPLEIQQKIVKTLDKFTELEA
                     TLEATLEAELALRKKQYQYYRETLLTFPQDLDRGGYNDITKAIGQVVGKNAHPTVVWK
                     SLGEIGEARMCKRILKEQTSNVGDIPFYKIGTFGKKPNAYISRELFEDYKQKYSYPRK
                     GNILISASGTIGRTVIFDGEDSYFQDSNIVWIENDESQVLDKFLFYLYQIADWNIAEG
                     GTIQRLYNDNLKKLKIPVPPLSEQQKIVNILDKFDSLTNSITEGLPKEIKLRREQYGY
                     YREQLLNFPKP"
BASE COUNT         3294 a         2233 c         2573 g         3006 t
ORIGIN      
        1 atagaaaatc aagtgtttgt tcaagttttt atgttattga atttacaata actacaaaaa
       61 tttatcttaa ttggctcgat tgatttttac acaaaacata gctaacatat ccaaaatcac
      121 tcacattagg agcttaaaaa tgacagcgat tactatccct caatttgaag aggtgacttc
      181 taagcaattt caatctgagt tcggcagaat tgttgatatc gtaaaaggca aaacccctgt
      241 ggcgattacc caatatggca gaccgacaat ggtgcttttt ccttacgatc aagcggttga
      301 agctcggcga ttattagcaa aacagcgttt gcttgaaatg cttgcagagc gagataagaa
      361 tccgccggca gctcttgcag aaatcacgct tgaagagttg gataaaatga ttgatgagga
      421 acgtaatgca ctctgattat ttagtgattg atacgaatat tttgattagt ggtttattgt
      481 tcccaaaatc aaatcccaat ttagcagtga aaaaagcctt attaggctat accatttgtg
      541 tctcgcaagc gacttttgac gaatttttag aagtctccgc tagaccgaaa tttgctaaat
      601 atttcagtat tcaggaaagg gaagaattta ttgccaattt gttggatgca gtaaagtttg
      661 tggaaattaa agaaacgatt acagattgcc aagatcccaa agataataaa tttttagaag
      721 tggcgatcag tgcaaaagcg aagtatttag tgacgggcga taaaaaagag ctcctcagta
      781 tgaaccctta tcggaatgtt gaaattattt ctgtcagcga atttttagcg gaaactcgct
      841 aatgaaacgg tttctcactc tttttcttct ccttttttca tctttttcat tagccgaaac
      901 ccaccaaatc ggcattctcg ctcagcgtgg ggaagcctac acccgcaccc attggcagcc
      961 ttgggtggat tggttaaatt cgcagtttcc caacgagcgg tttgagctgg ttccattggg
     1021 gattaacgag gcgagccgcc gggcggagtt ggattttctg ctgaccaatc aagctcagtt
     1081 tttctatttg agtaaccaaa atgtgcgatg gcttgccacg ctcaacagtc cgttttcggc
     1141 aaatggtgag caaggggcgg tgggcagtag catttgggtg cgtgccgaca gccattatca
     1201 gcagttaagc gatctgaaaa atcagactat cagtgcggtg gataacgatg ctttcggcgg
     1261 ttttttgctt gggttgtatc agtttcatca agcaggaatg cggcaaaatc gggatttttc
     1321 ggtgcagttt agcggttttc cggtggaaaa tgcgttggct ttgctggcgg aaaaacaggt
     1381 ggaagcggcg attgtaccgg tctgtttgct ggaagagttg gagaaagagg gcaagttcaa
     1441 gcggtcggat tttcgcttaa ttttgcaaaa cccacaggcg cagggttgcc ttgccagcac
     1501 gccgttgttg ccgaactggt cgctggcggc aatggaaaat gtgccaaacg agctggcggt
     1561 acagcttgcc acacgcttgc taaacagcca caatcccgac ctaccccgct ggacgttgcc
     1621 gttttcttcc gcccaagccg atcacattct gcgtgaactg tatcgccacc cgcaacaaaa
     1681 aagcctgtgg gcaacggtgc tggattgggt tcgtctcaat aaattcggct tgttggcggt
     1741 ggtgttgttc attttgctca accttgtcgc cctgcgttat caggtctatc gcaaaagcaa
     1801 ggcgttacag caggcacacc gcaaaatgca gcagtatcag caggaactga cccgagccga
     1861 ccgccttgct ttgttgggcg agatgacaac cggttttgct cacgaactga aacaaccgtt
     1921 gtcggcggtg cgaatgtacg ccgaggggct gaaaagccaa aacagcgatc cttatcaaca
     1981 gcggattttg gataagctga ttgcgcaggt agatcgggca gtgaaaacga tgcagagcat
     2041 tcgggactgg gcgcaaaacc gcccgagtgg tgaaccgcaa gcggtcattt tgaaccaatt
     2101 gattactaat gtgatcgagt ttgtggcggt ggaaaatcgc cagaatgcac aaatctcgct
     2161 gattgccgac cgcacttttc ggcttaattt acacgccacg gtactggaac aagtactgac
     2221 gaactgcctg ctcaacgccc tgcaagccgg tgcaagcgag atatcggtgc ggttacaagc
     2281 ggtcgaaaac gggctggaaa ttgcaatcga agacaacggc ggcggttttt cccctgccca
     2341 gcttgaattt ccgtttgtgc catttcgcac cgacaaacca cacggcttag ggctaggctt
     2401 ggtgctatgc caacggctga tgcaatcgct caacggacgg attgtattgg cgaacgggga
     2461 gaacggggcg aaggtagtgc ttttactccc tcaaatataa atgtaggggc aggtcctgtg
     2521 cctgcccgta aatcctatca aattcagggc gggcacagga cccgccccta cggaaaaaag
     2581 aaaaaatgat tattcacatt cttgatgacg aagaaagcat tttagacgct atgtcgttcc
     2641 tgcttgcccc gcttggggtg gaaatccaaa cgtggcaatc cagcctagat tttttggcac
     2701 aggcggattt acaccggcaa ggcgtgctgt tactagatat tcgaatgccg ctgccagacg
     2761 ggcaacaggt tcatcaacaa ctgcgagagg cacaatcgac cctggcggtg gtgattatga
     2821 ccgcccacgg tgatgtgccg atggcagtcg ctgaattgaa aaaaggcgca gtggattttc
     2881 tgcaaaagcc ggcaagtttt gaacagctaa aacaggcgat tgcacaggcg gaaaaagtaa
     2941 gtgaaaaagc ggtgaaaatt cgtgaaattt cgcaaaatta cgccaaattg acggaaaaag
     3001 agcgtaacct tgtgccactg attatgcaag gtttcaccaa taaacagatc gcagataaat
     3061 tagcgatttc agtgcgtacg gtggaagtac atcgagccaa tgtgatggaa aaaatgcagg
     3121 cggagagttt ggcggggctg gtgcagatga tcggggagtt acaatattaa aggtagcgga
     3181 aattgctctg ctacctttag tttcgacttt tgccgtatta atttacttct ttaaactgaa
     3241 tcattcccgc ttcggcaaaa ttgttatcgt catcttcgtc taagaaggtt ttggcttcaa
     3301 ttttgacatc atcaaaagcg gtgtcgcctt ctatgccttc aatggtttga ccgtgtttaa
     3361 tccctttaaa atcaaacaat ttcggatcgc ataagtggga tggcacgata tcttgcaaag
     3421 cactgaacat tgtttctaaa cgccccgggt attggcgatc ccaagtattc agcatttctt
     3481 tcaccacttg gcgttgtaaa ttaggctgag aaccacacag attacacgga ataatcggga
     3541 actgcttggc ttcggcatat ttgataatgt ctttttcttt acaataggcg agtgggcgga
     3601 tcacaatttg cttgccgtca tcagagatca gtttaggtgg catacttttc attttgccgc
     3661 cgtagaacat atttaagaat aaagtcgcca gcatatcgtc acggtgatgc cctaatgcaa
     3721 ttttggttgc acccaattcg gtggcggtgc ggtataaaat cccacggcga agtcgtgagc
     3781 aaagtgaaca ggtggttttg ccctccggaa ttttctcttt tacgatgccg taggtgtttt
     3841 cttccacaat tttgtattcc acgccaatgc tttctaaata gcgaggcaat acctcttccg
     3901 gaaatcccgg ttgcttttgg tctaaattga ccgctaccac actaaaattc accggtgcac
     3961 tttgctgtaa attgagcaaa atatctaaca gcgtatagct gtctttaccg ccggaaaggc
     4021 agaccattac acggtcgccc tcttcaatca taccaaaatc ggcaatggca ttaccgacat
     4081 tacggcgtaa acgtttttgt aacttgttga aattataagt aattttttta tcagattttt
     4141 gaatatcgtc tgtcataata gttgtactag gcttagaaat tagcggtgta tagtaaagat
     4201 ttcgcactat tttgcaagtt aattattcgg cttcagcgta gcgatatagt tacaactcac
     4261 atcattattg agccaaaatt tttcggttaa tgggttgaaa tggtagcctc tcatctcttg
     4321 gcaacgtaaa tcagcctgat cgcaccaagc taacaattcg gcaggcttga tgaatttttc
     4381 aaattcgtgc gtgccttttg gcaacatttt cagcacatat tccgccccga taattactaa
     4441 catataggct ttaaaagtac ggttgatggt agagaaaaac agcacgccgt caggtttgag
     4501 cagggcttta cagctttgaa tgatagaaag cggatcggga acgtgttcca gcatttccat
     4561 acaagtaatc acatcgaatt tttcttgatt acaagcggtc atttttgcta aaaaattttc
     4621 aatcgtggtt tgttggtaat caatctctaa cccactttct ttggcgtgct gctttgccac
     4681 ttcaagcggt tgagaggtca tatcgatgcc ggtaacaatc gctccctgtt ttgccattgc
     4741 ctcacttaaa ataccgccac cacagccgac atctaacacc tttttgccaa ataaaccgtt
     4801 cgatttttct aaaatatagg ctaaacgcag tggattaagc agatgaatcg gcttgaaact
     4861 gccgtttgga tcccaccagg ttttagccat attttcaaat tttgtgattt cttgctgatc
     4921 gacgttttgc ataaactgtt cctatggtaa atttagggca ttactataac gcatttagcc
     4981 taaaaggaaa atcagaatga cccgaattaa ccttgttccg ccaacggaat tatgcgatca
     5041 acatctgctt gccgaacatc gtgaacttac tcggattccg aatgcggtag cgaaaggcaa
     5101 atttagccta aaaggacagc cagaagatta caaactgggc gagggacacg ttcggttttt
     5161 cttcaataaa ctcacgtttt tgaaaaagcg ttacgatgcg ttacacgagg aatgtttagc
     5221 aagaggtttt aaggtgcaat atttctgggc ggaacattta ccacaagatc cctctctctg
     5281 gctagattat cagccgactg aaaccgctct gactgtaaat cgggagcgaa ttgcattaag
     5341 aatgccggca aatccacgtt ttagcgaaag aaaatgaccg cttgtacgcc tttttgttgc
     5401 tttttatgct ataatctcgc caattttttc gccttattta aggctctttt actaataaaa
     5461 ttaggaaatt tcaatgagcg aattagccaa agatattatt cccgtaagta ttgaggacga
     5521 attaaaaacc tcttaccttg actatgcgat gtcggtgatt gttgggcgtg ccttgcctga
     5581 tgtacgagac ggtttaaagc cggtacaccg ccgagtgctt ttttcaatgg atcaaaacag
     5641 caacacctat aataagccgc acgttaaatc tgcccgtgtg gtcggtgatg tgatcggtaa
     5701 atatcaccca cacggtgact ctgcggtgta tgacactatt gtgcgtatgg ctcaaccgtt
     5761 ctcactacgt tatatgttgg tggacgggca aggtaacttt ggttctattg atggcgatgc
     5821 accggcagca atgcgttata ccgaagtgcg tatgcagaaa attacgcagg aattattaac
     5881 cgatctcgat aaagaaacgg tggatttctc accgaactat gacggcaaag agatgattcc
     5941 tgatgtattg ccaaccaaaa ttccggctct gttagtcaat ggttcttcag ggattgcggt
     6001 cggtatggca accaatattc cacctcataa tttaggcgaa gtattagatg gttgcttggc
     6061 gtatattgaa aatgaacaga ttagtgttga agagctaatg cgttatatcc cggggccgga
     6121 tttcccgacc ggggcgatta tcaacggtcg taaagggatt gaagaggctt accgcaccgg
     6181 tcgtggcaag gtgtatgtgc gcgcgaaagc cagcgtggaa acaactgata aagggcgtga
     6241 gcaaattgtt gtaaccgaac tgccatacca agtgaataag gcaaaattaa ttgaaaaaat
     6301 tgccgagctg gttaaagaga agaaaatcga aggcatcagc aaaattgatg actattccga
     6361 taaaaaaggg atttcgattg ttattgaagt caagcgtgat gcagtgggtg aagtggtgtt
     6421 aaaccacctt tattctttaa cccaaatgca ggtcacgttt ggtatcaata tggtggcgtt
     6481 agataatggg cagccaaaag tgctgaactt acgccagatc atcgaagcct ttgttaaaca
     6541 ccgtcgtgaa gtggtcacac gccgtacgat ttttgaattg cgtaaagccc gtgaacgtgc
     6601 ccatatttta gaaggtttgg cgattgcgtt agcgaatatc gacccggtaa ttgaattaat
     6661 tcgagcctca aaaaccgcag aagaagcccg tgaaggctta ttggctcgcc cttgggcatt
     6721 aggcaatgtt gcaccaatgt tagaggctgc tggtgttggt gcttcccgac cggaagattt
     6781 acctgaacac ttaggagtgc gtgatggtga atactattta tctgaagctc aagccagagc
     6841 gattttagag ctacgcttac accgcttaac cggtttagaa cacgagaaaa tcgttgaaga
     6901 atacaaagaa ctcttaactg aaattggcga attaatccac attttaacca gcccagaacg
     6961 cttaatggaa gtgatccgtg aagagttaga acgtgtaaaa accgatttta atgatgaacg
     7021 ccgtactgaa attaccgcag cctctggcga catcaacatt gaagacttaa tcgcacaaga
     7081 agatgtggtg gttacgcttt ctcacgccgg ctatgtgaaa tatcagccgt tatccgacta
     7141 cgaagcacaa cgccgtggcg gtaaaggtaa gtcggcaacc aagatgaaag aagatgattt
     7201 catcgaaaaa ctcttggtgg caaacaccca cgacaccatt ctttgcttct caagccgtgg
     7261 gcgtttatat caattaaaag tgtatcaatt accgcaagca agccgtgggg caagaggcac
     7321 gccgattgtg aatattctgc cgttagtgaa agaagaaaac gaacgtatta ccgcgattct
     7381 accgattcca aacggtgaat ttagtgccga taagtttatc tttatggcaa cagctagcgg
     7441 tgtagtgaaa aaagtttccc ttgatgcctt tagcaacgtg cgtgcaagcg gtctgattgc
     7501 gttaaaactt cgtgaaggcg atgagctgat cggggtagat attactgatg gtaacagcga
     7561 aattatgttg ttctcggcac aagggcgagt agttcgcttt gccgaaacag cagttcgtgc
     7621 gatgggacgt accgccaccg gcgtacgagg tattaaactt tctaccaccg aaatttcaag
     7681 cgaagaaatt gaagaagctg aaattattga aactgacaat gaagaggcag aagattcctc
     7741 cagcgtcagc cttgataaag accgtgtggt ttctttagtg attcctcgca ccgaaggtga
     7801 tattttaacc gtcacccaaa acggctacgg taaacgtacg gtgattagcg aatatccggt
     7861 gaaatcccga gcaaccaaag gggtcgtttc gattaaagtg aatgaacgaa acggcaaagt
     7921 ggttgcggca gttcaagtag aggaaaccga ccaaattatg ttgattaccg atgccggcac
     7981 gctggttcgc acccgagtgg cagaagtcag cctcgttgga cgaaacaccc aaggcgtacg
     8041 tattattcgc accgcagaag acgaacaagt tgttagcctt gaacgagtct gcgagcctga
     8101 agacgatgaa aatgaaagcc tagacgcatt agaaaatgcc gaaacagtag aaacatcaac
     8161 tgaagaataa tcttaactaa acaagcggtc gaattttcac aattttttgc aaaaatagaa
     8221 ggaaattcga ccgctttaat atatgagcaa tattaggaat acaaaatggc agctattcaa
     8281 caaagagcag aactccatcg tcaaatttgg caaattgcaa acgaagtgcg tggtgcggtg
     8341 gacggctggg attttaaaca atatgtatta ggttcgctgt tttatcgttt tattagcgaa
     8401 aatttttccg cctatatcga acaaggcgat gaaagtattg attacgcagc atattccgac
     8461 gaagagattg atgcattcgg tattaaagaa gatgcgatta agagcaaagg ctactttatt
     8521 tacccaagcc agttgtttaa aaatgtcgtg aaaaatgcca ataccaataa caatttgaat
     8581 attgaactcg ccgatatttt tgccgacatt gaagcttctg cggtagggtt tgattcggaa
     8641 aaggatatta aaggcttgtt tgccgatttt gataccaaaa gtaaccgctt gggtaatacc
     8701 gttgaagata aaaacaagcg attagcggcg gtattgaaag gggtagagtc gcttaatttt
     8761 ggtgattttg ccgagaacca gatcgacctg ttcggcgatg cctatgaata tctaatttct
     8821 aattatgcgt ctaacgcagg taaatcgggc ggtgaatttt tcacgccaca aaatgtgtct
     8881 aaactcattg cacaacttgc tttatacggg caaagtgcgg tcaataaaat ctatgatccg
     8941 gcttgtggtt ccggctcact gttattgcaa gcgaaaaagc agtttgacga tcatttgatt
     9001 gaagaaggct ttttcgggca ggaaatcaac cacacgactt acaacctcgc ccgaatgaat
     9061 atgttcttgc ataatattaa ctatgacaaa ttccatattg agctgggcga cacactgatt
     9121 aatccaaaac tcaaagatga caaacctttt gatgcgattg tctctaaccc accttattca
     9181 attaaatgga ttggctcgga cgaccctaca ctcatcaacg atgagcgttt tgctcctgcc
     9241 ggcattcttg ctccgaaatc caaagccgat tttgccttta ttctgcacgc cctgaactac
     9301 ctttcagcaa aaggacgggc ggcgattgtt actttccccg gcattttcta ccgtagtggt
     9361 gcggagcaaa aaatccgtca gtatttaatt gaacagaatg tggtagaaag tgtgatcgcc
     9421 ttgtcagcaa atctctttta cggcaccagc attgcgacta atattttagt gctatctaaa
     9481 cacaaaactg acaccaaaac ccaatttatt gatgcaagcg atctgtttaa gaaagaaact
     9541 aacaataatg tgctgaccga tgaacatatc gctcaaattc tcaaattatt tgccgataaa
     9601 gccgatgtgg agcatttcgc caaatcggta gataaccgcc aaattgcgga gaatgagtac
     9661 aatcttgcgg ttagctctta tgtggaagca aaagataccc gagaagtgat caatatcacc
     9721 gaactcaata aagaaattcg caaaacagtc gcaaaaattg accgcttgcg ggcagatatt
     9781 gatgcgattg tggcggagat tgaacaacag tgatcgtgga taataaaaag ggcggatcac
     9841 attcgcccaa ataaaacaag cggtataaaa tcaaggaaaa tttgcaaaat gagtaatagt
     9901 attattgaga aattattaaa tggggctgag gtcgagtgga agccgttagg agaggtcgca
     9961 gagttaaaac gcggaaaaac aattacagcg aaagataaaa cagaagggaa cattcctgta
    10021 attagtggtg gtcagaagcc agcatactat actggcgaat ataatagaga gggtgaaaca
    10081 attactattg caggaagtgg ggcatatgct ggtttcttaa tgtattggaa tgaaccaatt
    10141 tttcttggag atgctttttc cgtaaaacca gatttagata ttcttatcac aaaatatgta
    10201 tatcattttt tgttatctaa acagcagtgg atttttaatt taaaaaaagg gtcaggtgtt
    10261 ccacatgttt atccaaaaga tttagctata ttggaaatcc ccattcctcc actcgaaatt
    10321 caacaaaaaa ttgtaaaaac acttgacaaa ttcacggagc tggaagctac gctggaagct
    10381 acgctggaag ctgaattagc tctgcggaaa aaacaatatc aatattaccg agaaacccta
    10441 ttgacattcc cacaagattt agataggggg gggtataacg acatcaccaa agccatcggg
    10501 caagtggtgg gcaagaatgc ccaccctacg gtggtttgga agagtttggg ggagatcggt
    10561 gaagctagaa tgtgtaaaag aattttgaaa gagcaaacta gcaatgttgg agatattccg
    10621 ttttacaaaa ttggaacgtt tggaaaaaaa ccgaatgctt atatttcaag agaattattt
    10681 gaagattaca aacagaaata tagttaccct agaaaaggga atatcttaat ttctgcatct
    10741 ggaacaatag ggagaacagt aatttttgat ggcgaagatt cttattttca agatagtaat
    10801 attgtttgga ttgaaaatga tgaaagtcag gtcttagata agtttttatt ttatctttat
    10861 caaattgctg attggaatat agcagaaggt ggaacaattc agaggttgta taatgataat
    10921 ttaaaaaaat taaaaattcc tgttcctcct ctttccgaac aacaaaaaat cgtcaatatt
    10981 ttagataaat tcgacagctt aaccaattca atcaccgagg gtttaccaaa ggaaattaaa
    11041 ttaaggcgag aacagtatgg gtattatcgt gagcagttat taaattttcc taagccataa
    11101 ggataa
//
LOCUS       DANLUT010000081        10901 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLUT010000081 DANLUT010000000
VERSION     DANLUT010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10901
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(53..1342)
                     /locus_tag="PXB38_001559"
     CDS             complement(53..1342)
                     /locus_tag="PXB38_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL5353870.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHFSPKIEKEQDSA"
     gene            complement(1466..2263)
                     /gene="ccsA"
                     /locus_tag="PXB38_001560"
     CDS             complement(1466..2263)
                     /gene="ccsA"
                     /locus_tag="PXB38_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL5353871.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2479..3003
                     /gene="yceD"
                     /locus_tag="PXB38_001561"
     CDS             2479..3003
                     /gene="yceD"
                     /locus_tag="PXB38_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL5353872.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3020..3190
                     /gene="rpmF"
                     /locus_tag="PXB38_001562"
     CDS             3020..3190
                     /gene="rpmF"
                     /locus_tag="PXB38_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL5353873.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3209..4231
                     /gene="plsX"
                     /locus_tag="PXB38_001563"
     CDS             3209..4231
                     /gene="plsX"
                     /locus_tag="PXB38_001563"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL5353874.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     ITPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4328..5611)
                     /gene="hisD"
                     /locus_tag="PXB38_001564"
     CDS             complement(4328..5611)
                     /gene="hisD"
                     /locus_tag="PXB38_001564"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL5353875.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPEFVASDLLSQAEHGADSQVILVTPSESLAKAV
                     AEELEKQVSVLPRAETACKALAHCRTFIAENLQQAVEISNKYAPEHLIVQTEDARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5623..6522)
                     /gene="hisG"
                     /locus_tag="PXB38_001565"
     CDS             complement(5623..6522)
                     /gene="hisG"
                     /locus_tag="PXB38_001565"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL5353876.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6555..6682)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6881..7738
                     /locus_tag="PXB38_001566"
     CDS             6881..7738
                     /locus_tag="PXB38_001566"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL5353877.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7879..9360)
                     /gene="ilvC"
                     /locus_tag="PXB38_001567"
     CDS             complement(7879..9360)
                     /gene="ilvC"
                     /locus_tag="PXB38_001567"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL5353878.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9582..10826
                     /locus_tag="PXB38_001568"
     CDS             9582..10826
                     /locus_tag="PXB38_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL5353879.1"
                     /translation="MKINKIILQSCGECGQQVRVPLMLNGNAVCPVCHNILRKNNTWS
                     LRRSAFLALAILILLPFALHFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTVQLQRIIRQRPRYTLIFLSKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDVNLIAFVLVTILNTLLFIKTDPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGQQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDARMLWKIHYDHKRKATH"
BASE COUNT         3223 a         2447 c         2064 g         3167 t
ORIGIN      
        1 taacacatta tttgtacaaa taatgtgtta tttactttct tttttcttaa aattaggctg
       61 aatcttgctc tttttcaatt ttcggtgaaa aatgttcaac tttcgcttgt ttaaccatat
      121 tttcactcac ttcaagaatc atcactttca agttgtagag ttcaaattcc attccttcat
      181 caggaatttt ttctaaatgc tctaaaatca agccgttaaa ggttctggct tcctcaagcg
      241 gtaaatccca atcaaatagt ttgttcagat cacgcaggtt ggctgagcct tcaataatca
      301 ccgtaccatc tgattgttgc tgaacttctt gctcaagggt cggtgctgat gaagtcgtaa
      361 attcacccac aatttcttct aaaatatctt caagagtgac tagcccttta atatcaccat
      421 actcatcaac cactaaacca atacgctctt tattcgcttt aaagttcatt aattgtgtag
      481 tgagtggtgt gccttcagga ataaaataga cttcatctgt tgcacgcagt agcatttctt
      541 tggtaaattc gtttttctcc aacattaaac gaaaggcttc acgcacccgc aaaatcccaa
      601 caatattgtt gtccatatcc cctttgtaga taatcacccg agcgtgaggg gcgtgattaa
      661 gctgacgcat aatcgctttc cagtcatcat caatatcaat gccgctgatg tcgttgcgag
      721 gcaccataat gtcatcaacc gtcacttttt ccatatctaa aatagagacc aacatttcac
      781 ggtgttcggc aggaataaat ttaccggcat caagcactac actacgcagc tcttcggagc
      841 ttaagccttg tttatctttt tgttgaatcc gcaataattt catcagcccg gcaataatca
      901 aattcattaa aaatacaatc gggctgagta attttttaag cggtgttagc acaaagctgg
      961 cgaaaaaacc gactttttca gggtaaattg ccgctactgt tttaggtagg atttccgaaa
     1021 aaaccaacat tacaaaagtt agcaaaccgg ttgcaattgc cacaccggct tcaccggata
     1081 actgcatacc gatcatcgtt gcaatcgcag aggcggcaat gttgactaag ttattacaaa
     1141 ttaagataag gctaagtagc acatcggtgc gtgccaagag tttttccgcc agtttcgccc
     1201 ctttatgccc ttgctcggca aggtgacgca ttttgtagcg gtttaaagac atcaagccgg
     1261 tttccgagcc tgaaaaaaat gcagagagta ctaaaagaat agctaaggta ataaataaac
     1321 tactcagggg aatactgtcc aaaattcaat tcctatgtaa attaatcata aaaggtagcg
     1381 taacactaaa agcgttgtca ctacctcact ttgtcggttc agccgacttg caaaaaattt
     1441 tgcttttttg accgcttgta gatcattaat tgacgatcaa acgactaccg aaatagccga
     1501 tggtgagcaa catcataccc gaaatcgaat aaataagcac ccgttttcca cgccaatgta
     1561 atttccactg tccaagtaac tgaatgctat aaacaagcca agctaaaaag gagaaaattg
     1621 ctttatgaat atgctccggc tcgaaaaagt tatgcaaata aaccacaccg gaaaataaag
     1681 tgagcgtcag catagcttgt gcagctaagg ttaaagtaaa gaaatggcgt tcaaccgtca
     1741 ttagcggtgg tagaatctgg caaaagaaca ttgttttgct ctttagtttt ctatccagcc
     1801 atttgagttg aaaagcataa attaatgcta aaaagaagag agcataagaa aataatgcaa
     1861 tccctaaatg gaaaagcagt cccgcatttt cttgcacatt acggataaaa ctacctttta
     1921 caaatccagc cacccccaca ctacaaatgg cgaaagagta cacaataatt aaaggaaacc
     1981 aaactgtttt ccattttaac aacgcaagtg tgacacaagc cgccataatg aaactcatca
     2041 aagagattac atttgttacc gtaaaattct gcccttcgat taaaaataat tcattatata
     2101 acacagaaaa atgcaaaatc gtggcaagta acccaaaccc aaagactaac atcatattag
     2161 gctttttatt aactgttgcg gcattttcta aattcactag agtaggggca acccaaagta
     2221 gcgctagagc gtaagcaaca atggataaaa gaggaagtaa catattgtct cgaatctcgt
     2281 caaataagaa taactatcag aattttaatc aaaagtaacc gttttagcta gtttttgctg
     2341 ttgctagatc aaaaattatc ctaaaaaatg tgcttttcgc cttaaattga accctacctt
     2401 ttctcggtaa gattatctca ctgaaaacaa taattttcct ttgactaatt tgctttctat
     2461 ctgtaatatg cacaccctat gcaaaaggta aaactacccc ttacgattga cccttacaaa
     2521 gatgctcagc gtcgcgttga ttatgaaggc tacatttcag gtaaacttct aacacgcttg
     2581 ggtgaatcag tatgtaatgt gcaaagtgat gcacaagtca ctctctcgtt atatgtcgat
     2641 ccacaacgcc taactgtgat taaaggcaca gcaaaagtag atgtggaatt tgattgccaa
     2701 cgatgtggtg acccgtttac acaaacgctc gactgttcat ttgttttcag tccggtgtct
     2761 aacatggatc aggcggacat cttgcccgaa atttatgaac ctatcgaagt aaacgagttc
     2821 ggtgaagtaa atttactaga tatgattgaa gatgaattta ttcttgaatt acctctagtc
     2881 ccgatgcata gtgaagaaca ctgtgaagtg tccgtaagtg aacaggtatt tggcgagttg
     2941 ccggaagaac tggtacaaaa accaaacccg ttcgcagtat tagctaattt aaagaaaaac
     3001 tagatctagg agaaagcccg tggctgttca acaaaataag aaatctcgtt cacgtcgtga
     3061 tatgcgtcgt tcacacgatg cattaacaac tgcagcagtt tcagtagata aaaccagtgg
     3121 tgaaactcac tttcgccacc acgtaactgc agacggttac taccgtggtc gtaaagtaat
     3181 caacaagtaa ttcctttcga ggtttatctt ggttgatatc actcttgcag tagatgtgat
     3241 gggcggggac tttggtcccc gcgttactat tcctgcactg gaaaaagcct taaaacaaaa
     3301 tccaagcctt tcttttttat tatttggtga tgaacaccaa ataacccctt tattacaaaa
     3361 acacacacta ctcaaccacc ccaaaatcca aattcatcat accgaacaag tgattgaagc
     3421 tgatgttccg ttcactactg caatccgcca aagcaaaaac agctctatgc ggttagcgat
     3481 tgaggcagta aaagagggca aagcacaagg ttgtgttagt ggcggtaaca ctggtgcgtt
     3541 aatgggattg gcaaaattat tgattgaacc attaccaaat attgaacgcc ctgcactcac
     3601 ttcgctaatt cctaccctca acggcaaatc cagcgtaatg ttagatttag gggcaaatat
     3661 tgaagtaagc aatcaccagc tacaacaatt tgcagaaatg ggaaacctgt ttgctcaagt
     3721 aatgcttgat ttagtttacc ctcgcctgtc tttattgaat attggtacag aagaaaataa
     3781 aggcacggca caacttcagg cagtgcatca actgctgaaa aacagacaag acttaaatta
     3841 caccggcttt attgaaagcg ataaattaac cagctatctc actgatgtga ttatttgtga
     3901 cggctacacc ggcaatatcg cgttaaaagc gttggaaggg gcagctaaaa atattatttc
     3961 tctctttaaa aaagagaaag ccgattccaa tatttgccgt aacaccaaac gatatttact
     4021 gaaagcgatg ttctaccgtt actaccgcaa attgcaacaa attaaccctg accgccataa
     4081 cggggcgacc ttgctcggct tatctaaagt agtcgtgaaa agccacggcg gggcaaatat
     4141 caatgccttt tattacgcta ttgattatgc ggtgcaacaa attcaaggcg acattccaaa
     4201 taaaatccta gagggtttaa cccaaaaata agcgaactca actgttcgct tattttcatt
     4261 tcttgtttca cttaaagata caagcggtca aatttgcaaa aaaatttacc cattcaaccg
     4321 cttgtgttta gccttttaat tttgccactc gtaaactaac cgcattgcgg tgtgcatcta
     4381 gcaattctgc acttgccatt cgttccaccg tttcggccaa ggctagaaag ccttgtggtg
     4441 tcagctcctg caccgtcatt cgcttgctaa aatcagctaa acctaagctc gaataggttt
     4501 tagtgtagcc gtaagtcggt aaaacgtggt tagtgccgct agcataatcc cccatacttt
     4561 ccggcgaata cgcccctaag aaaatcgagc cggcattatc taaatccgcc aacaacgagc
     4621 gggcatcttc agtttgcaca attaaatgct caggtgcata tttattgcta atttcgaccg
     4681 cttgttgcag gttttctgca ataaaagtac gacagtgagc caatgcttta caggcagttt
     4741 cagcacgagg cagaaccgac acctgctttt ctaattcttc agcgactgct tttgccaagc
     4801 tctcacttgg tgtgactaaa attacttggg aatcggcccc gtgttccgct tgagagagca
     4861 agtcgctcgc cacaaattca gggtcggcaa actcatcggc aatcaccaac acttccgacg
     4921 ggcctgccgg catatcaatc gccgtgcctt cttgcacaac ttggcgtttc gcctccgtca
     4981 caaacgcatt gcccgggccg aaaattttat ccactttcgc taccgtttgt gtgccatttg
     5041 ccatcgcaat aatcgcttga gcccccccaa ctgcgtaaat cgtttccacc ccacacaaat
     5101 gggcggtgta gagaatttca tcggcaatcg gcggtggtga gcaaagcaca atcttgttac
     5161 aaccggcaat ttttgccggc actgcaagca ttaacacggt agagaaaagc ggggctgaac
     5221 cgcccggaat ataaagcccc accgcattaa tcgggcgagt gatgacttgg caacacaccc
     5281 ccggctgggt ttcaatatcc acctcttgat tttgctgtgc cttgtggaaa gcctcgatat
     5341 tcgctttcgc attttgaatc gcttgcttaa gctctggtga aatacggctc tgtgcttgct
     5401 gaatctgctg ttctgataca actaagctct ctaattttac tttatcgaac ttttcagcca
     5461 attcaaataa tgccttatcg ccgttggcaa ttacattcgc tttaatttca ttaactgccg
     5521 ctttaatact ctcgccaacc acctgtgccg gacgggcaag atattgctgc tgctcagttt
     5581 ctgttaaatt gttccaaatt agggtttgca tatttattcc ttttacgcca acattttctc
     5641 aatcggtaaa accaatacgg aacttgcgcc catttctttt agctgctcca ttgtttccca
     5701 gaacaggttt tcttggctga caacgtgcat tgccacacgg gtttggtcgt tagctaacgg
     5761 taaaatagtc gggttttcca caccgggtaa taaagcggta atttccgcca gtttgtcttt
     5821 gggggcgtgc agcataatat acttagattc gttcgcctgt tgcacacctt gaatgcgggt
     5881 taataattta tccactaacg cttgtttttc cgctgaaagt ggttcttggc gttgaattag
     5941 gcaagcagtt gaacggtaaa tcacttcaac ctcttttaat ccgttcgcct ctaatgttgc
     6001 acctgaagaa accaagtcac aaatcgcatt cgcaattccg gcacttggag caacttcaac
     6061 cgaaccggtg agtaaaatac ttttaaacgg cacattttgc tctttcatat accgctttaa
     6121 taaattgggg taagaagtgg caatcacagc atcttctaaa tctttgatat tgttataatt
     6181 tttatcacga tcaatagcta acgataaacg gcagccacca aaatctaact gacgaagttt
     6241 tttataggca acattctcac cagcacttaa tcgccctaat tccacttcct ctaatacatt
     6301 ttcaccgata atcccaagat caactacgcc gtcaaaaact aagcctggaa tgtcgtcatc
     6361 acgcacccgt aaaatttcaa tcggcatatt ttctgaatag gcaatcaggc gttgatcgtt
     6421 ccaaatgatt ttcacgccac attgtttaag caactcacta cattcttggc ttaagcgacc
     6481 ttttttctgc atcgcaattc ttaatcgatt ttgtgttgtc attgttgttt ccttcttatg
     6541 ttttaaattg taaaaataaa aaaacctctc gaaatcactt ccgagagggt taaatttatg
     6601 ctgcgtttag gcgtactcgg aagtcttatc ttccgcacat accaaatgcc cgaaagatta
     6661 ttcaggtaaa tgatggtggt gatgagtacg aataaaagcc attttgttgt tctccaaact
     6721 aaattgcttt aaaagatacg cttaaatttt ggcaatgaca agtgtttttt gcgaaaaaat
     6781 tgctattttt catctctcta aaacaactat cgcaaacgtt tgcgtaaagc ggtataattt
     6841 gcctgatttt ttgcaaattc aacaaagtag gaataacact atgcaaatca gcctcaaaaa
     6901 gatctactcc ggcaaagtcc gtgatctcta cgaaatcgat gaaaaacgta tgcttatggt
     6961 tgccaccgac cgattatctg cctttgatgt tattttagac gatcctattc ctcgtaaagg
     7021 cgaaatcctc acccaaatct ccaacttctg gttcaacaaa ttagcccaca ttatgccaaa
     7081 ccacttcacc ggcgacagtg tgtttgacgt gttaccgcaa gaagaggcag aagctattca
     7141 acatcgtgcg gtggtttgca aacgcttaat accggtgaaa attgaatcga ttgtgcgggg
     7201 ttatttaacc ggctccgggc tgaaagatta ccaacaaact ggcacgatct gcggcttaac
     7261 attgccggaa ggcttggttg aggccagcaa attaccgcaa ccgatcttca caccgtccag
     7321 caaagccgag gtgggcgatc acgatattaa tatcagctac gaagagtgtg aacgccagat
     7381 cggtcaagaa cttgccgcca aagtgcgtga tgccgctcta aaactctaca ctgaagcggc
     7441 aaactatgcc ctgaccaaag gaattattat ttgcgacacc aaattcgaat tcggcttaga
     7501 cgaaaacggt gaactaacgc taatggacga agtcctaacc ccggattcca gccgtttttg
     7561 gtcagttgaa acctaccgag aaggcacaaa tccaccttca tttgataaac aattcgtgcg
     7621 tgactggctg gaaaatagcg gttggaacaa acaaccccca gccccgaaaa taccggcaga
     7681 ggtaattgaa aaaaccgtag cgaaatatca agaagcattg gatttattaa ccaaataaca
     7741 ccacaagcgg tcaaatttac gctatttttt gcaaaacaaa aacctgtaag ccaacactta
     7801 caggtttttt agttagtggt aaaaagtgcg gttattctac cgcacttttg caaaattttg
     7861 tgtaaatctg accgcttgtt agccttgcga agaaatacgt ttcatatctg tcatataacc
     7921 acgtaattct tgaccgatta actcgattgg gtggttacgg attgcgtcat tcacatcacg
     7981 taaggtaacg ttgtcgattt ccactgccgg agttggttca cctaaatcgc ctttctctaa
     8041 cgttgggata attttctccg ctaaaatcgg ggttgcaacg tgagagaata agtagttacc
     8101 gtattctgcg gtatctgaaa ttaccacgtt catttcatat aaacgcttac gagcgattgt
     8161 atttgcgatt aacggtaact cgtgtagaga ctcgtagtaa gccgattctt cataaatacc
     8221 ggctgaaacc attgtatcaa aggctaattc aacccctgct ttcaccattg caaccattaa
     8281 cacaccgtta tcaaagtatt cttgctcaga aattttaata ccgtctgctt gtggtgcgtt
     8341 ttcaaaggct gttttacctg tttcttcacg ccattttaat aagttggcat cgccgtttgc
     8401 ccagtctgcc atcatagttg atgagaactc accactgatg atgtcgtcca tatgtttttc
     8461 aaataagaac gctaattctt ctttgatttg ctcagaaagc tcgaacgcac gcaatttggc
     8521 actgtttgat aagcgatcca tcattaaggt gataccgcct tgttttaacg cttcggtaat
     8581 ggtttcccaa ccgtattgga tcaatttacc tgcgtaagcc ggatctttac cttccgacac
     8641 taatttgtcg tagcacacga ttgaacctgc ttgtaacata ccgcaaagaa tggtttgttc
     8701 acccattaaa tcagatttca cttctgctac gaatgaagat tctaatacgc ccgcacggtc
     8761 accaccggta gcacttgccc acgctttcgc aatggctaaa ccttcgcctt tagggtcatt
     8821 ttccgggtga acggcaatta aggttggcac accgaaacca cgtttgtact cttcacgcac
     8881 ttccgtgccc gggcatttcg gagcggtcat cacaaccgtt aaatccggac gaatttgctc
     8941 accttcttcc acaatgttga aaccgtgtga ataaccaaat gccgcacctt gtttcattaa
     9001 cggcattaca tcggcaacta ctttagagtg ctgtttgtcc ggcgttaagt taatcactaa
     9061 atccgcttca ggaattaatt gctcgtaagt acccaccaca aagccgtttt cagaagcacg
     9121 tttaaatgaa gcacgttttt cagcaatcgc ttcggcacgt aaagcgtaag caatatctaa
     9181 gcctgaatca cgcatattta aaccttggtt taaaccttga gcaccacaac ccacaatcac
     9241 gatttttttg ccttttaaga aattgcagcc atctgcaaat tcatcacgat ccataaagcg
     9301 gcaacgacct aactggtcta atttttgacg taaatttaaa gtgttgaaat agttagccat
     9361 tttttaatcc ttatttgaat taatgagatt gatatgatgt tttgtttgca cattgttata
     9421 gtttgatttg attatacctt aacctaatat tgcgtaaatt gaaaatatta atatttcata
     9481 ttgcataaaa tgcaacttgc aaaaattttg ccaaatttaa ccgcttgcaa tctctacgat
     9541 aaagtagaaa ataaccacct aatttaatag aagatcaaaa aatgaaaata aacaaaatca
     9601 ttctacaaag ctgtggcgaa tgtgggcaac aggtacgagt gccgcttatg ctcaatggaa
     9661 atgccgtttg cccggtatgc cataacatat tacgcaaaaa caacacttgg agcttacgcc
     9721 gcagtgcttt tttggcgtta gcaattttga ttttgctccc ctttgcactt catttccctc
     9781 taatgagcat tgacttactc ggcatcaaaa ttaacgctac cgtatgggac ggcatttgga
     9841 agatggcaac cgaaggctac ccttacaccg cttttatggt gctagtctgt gcggtaataa
     9901 tgccgattgc atttgtattg ctaattttaa ccgttcagct acaacgtatt attcgccaac
     9961 gcccccgtta taccctgatt ttcttaagca aaatcaaaga atgggtaatg cttgatgtct
    10021 atttagttgc ccttgcagtt gcagctttta aaattcgaga ttatgccgat ctacaatttg
    10081 acgtaaattt aatcgccttt gtgttggtaa ccatcttaaa caccctactt tttattaaaa
    10141 ccgatcccaa acaagcgtgg gaacgttttt acccagaata tcacgcctta ccgtttgatc
    10201 acccaagcaa tccaacactt tgcccgacct gtgaatattg ctttgatgaa accatcttgg
    10261 atttaaaagg acaacaacgc tgccctcgtt gtgaaagcaa tttatcaatt tccgataacg
    10321 ttaaaataca acgggtttgg gcttgcttaa ttgcaggaac gattatgatg attccggcaa
    10381 atattttccc gatttcgacc actgaattgg cagggcaggt ttcggcagat tcattaatgt
    10441 ccggcgtgct tctgtttatg gaaatgggta gctacaccgt ggcagcgatt gtgtttatcg
    10501 ccagtattgc cgtgccggtg agtaaaatta ccattatttt ttatctcttg ctggcaattc
    10561 attacaaatg gaagcacccg attcattggc aaatgaaact actgcactac gtccattttg
    10621 tcggacgctg gtcaatgctg gatttattcg tgttatcatt gatgatgtcg ctactcgaac
    10681 gagggcagat tctcagtttc tcggtagggg aagccgcttt ctattttggt gcagccgtat
    10741 tcttaacgat gtttgcctct gcaaatttag atgccagaat gctgtggaag attcattacg
    10801 atcataaacg caaagctacc cactaaattc cctttatcgt taaaaacata aaatagctta
    10861 ggacgggctt ctgcccgtct ggaagtagga ataggcataa t
//
LOCUS       DANLUT010000082        10898 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLUT010000082 DANLUT010000000
VERSION     DANLUT010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10898
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..271
                     /locus_tag="PXB38_001569"
     CDS             <1..271
                     /locus_tag="PXB38_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353880.1"
                     /translation="MKLARKAQRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSF
                     QMEPSSAGIMMTVYAWVVFLLSLPLMLLTANMERKRLLLMLFMGE"
     gene            268..916
                     /locus_tag="PXB38_001570"
                     /pseudo
     CDS             268..916
                     /locus_tag="PXB38_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(983..2716)
                     /locus_tag="PXB38_001571"
     CDS             complement(983..2716)
                     /locus_tag="PXB38_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL5353881.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(2721..2942)
                     /locus_tag="PXB38_001572"
     CDS             complement(2721..2942)
                     /locus_tag="PXB38_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL5353882.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            3181..3753
                     /locus_tag="PXB38_001573"
     CDS             3181..3753
                     /locus_tag="PXB38_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL5353883.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLPNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            3784..4989
                     /locus_tag="PXB38_001574"
     CDS             3784..4989
                     /locus_tag="PXB38_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5353884.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            5003..8170
                     /locus_tag="PXB38_001575"
     CDS             5003..8170
                     /locus_tag="PXB38_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL5353885.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENGLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            8398..9861
                     /gene="guaB"
                     /locus_tag="PXB38_001576"
     CDS             8398..9861
                     /gene="guaB"
                     /locus_tag="PXB38_001576"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL5353886.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKDRGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            9982..10653
                     /locus_tag="PXB38_001577"
     CDS             9982..10653
                     /locus_tag="PXB38_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL5353887.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
BASE COUNT         3191 a         2020 c         2460 g         3227 t
ORIGIN      
        1 tatgaaactt gctcgaaaag ctcaacggag attatcgttc cttagagtat ttagtcttgc
       61 ctttgcggct tttatagtaa acaccaccga atttattcct attgcattgc tttcagacat
      121 tgcaagcagt ttccaaatgg agccttcatc ggcaggcatt atgatgacgg tttatgcgtg
      181 ggtggtattt ttattatcgt taccgttgat gttactcacg gcgaatatgg aaagaaaacg
      241 gctgttgctg atgttattta tgggcgaatg atcgggcaag ccttaggctg gcgggcaacc
      301 tttggcatta ttgggattat cgctttgatt gtgctaatga tgatttggcg gttgctgcct
      361 tatttaccaa gcaaaaatgc aggctcgata aaaagtttgc ctttgttatt taaacgcccg
      421 atgttaatcg gcatttattt gctggtggca ttgatcgttt caggacattt taccgcttac
      481 agctatattg agccgtttat gattaaaatc agttcggtga gtgtggaaaa caccaccttt
      541 attttgctgg tttttggctt ggcaggtgtg gtggcaagtt ttttatttgg tcggttatat
      601 ggcaaagccc cgaataaatt tatcttaagc gggatcgcca ttattatgtg cagccagctt
      661 tgtttactgt ttttgagtga ctcaacagtg gcaatgttta tggtcgcttt tgtctgggga
      721 attggcatta ccggaatgag cattgcgttg caaatgaagg tgcttgaact tgcccctgat
      781 acgactgatg tcgcaactgc aattttttcc ggcacttata atttaggcat tggcggtgga
      841 gcattactgg ggagcagctt ttgtagcaat ggtttggttt gtatttgtta gcttgaaata
      901 tagacagctc agatagtgac aagcggtcat attttgctga aattttgcaa attttcctgc
      961 aaaaatgacc gcttgttgaa cattactttt caataaattg attgctttgt tgaatcattt
     1021 gtaagaacaa cgctaatggt ggtcgagcat ctttctcgtg ttcgccattg ctgttaaagt
     1081 gcttaaagtt gcctttacga tcaatttgat attgatcgcc attcggcata atcgccacat
     1141 tccatttgtg attagaactg gatacccata aacgttggtt ctgggtgctt aaatccatac
     1201 cttgtgcata atcattcagc ggattttgca cgccgaagaa ttggctcagt aaggttggca
     1261 taatatctaa atggcttgaa aggaaatggt actctttgct ttcgccttgc cagtagaaca
     1321 tcatcggcac ttgaatgtgt tgtttatcga agctattttc tgctccaact tcattactaa
     1381 tatcggcggt aatgattacc agcgtattcg ccaatagtgc attttgggtc aaatgttgcc
     1441 agatttcagc gaattgccaa tctaataatt ttgcctgctc ttgagcggtg tgggcgaagg
     1501 gcattcttaa gtctaaataa ctaaagaacg gattttccaa tgagcgagag ctgatccagt
     1561 ttttccattg cccaatcgcc cctacattac tgtgcgccgt aggcaataaa ataccagaga
     1621 agatcgcctg atgataaatc gggtcggcaa aaccattatg tgaaaacagc cctaattgat
     1681 agtccgattt tctagcgatt tcgataagcg gtgacacggt tttatcggct aaaacggaat
     1741 ccaaatattt accgcttaaa ctgtaaaata gacctaatgc accggcagag gctgaatcac
     1801 cactactgta atgctgcata aagcggtggc tttgttggct gatttctgtc agcttaggca
     1861 ttgtttcggc atttattatc tgtttagata aacctgataa attaatcagt aaaatattag
     1921 ttgagggcgt tttggtcgca atcaagggag attttggata attcagatag aaagtatcta
     1981 gtctgccact ttcttcaatt tcttgattaa attctactcg gtcaataaaa ccgtgttttt
     2041 ctaagaaatt acgagccgtc atcgggtaag aaagtgggta gtttgctcgt tgagcggtaa
     2101 tcgggcggta ggcattcata tctgcccacg catagattaa atgagtagcg gtaaagctga
     2161 tcacgaaaaa gagagcgaca tatttgcccc atttttggcg gctaaaacta cgcagtttct
     2221 gccagcacca gcgagagtag agcatttctg ccagcaaaag gagtggcatt ggtacaaaca
     2281 gcagttgcca tttacgggtc agttcccctt cttccggatt aactaacaga tcccatacaa
     2341 gcggtgataa atgcagataa aattgcttga agacttcagt atccaccaat aacacggttt
     2401 gcccgatggt ggctaaaatc acggaaagcc cacgataggt gcgatgattc ttaacaataa
     2461 aactgagcgg aaacagaatt aatagaaatc ctgcaaagac cacaaagctg aaatgcccga
     2521 acaggctgac aaagaaataa agtttgccta caagcgtgtt cggccagtct gcattaaatg
     2581 cgtaacgaga ggaaatgagt agtgccaaca caatattaaa tagtgcaaac caatgccccc
     2641 acgtgatttt ctgtgaggtt tcttctcgat attggcgaga attggtcggc aataaactgc
     2701 gtaggcgtgc aaacatcatc ttatttggtt tttagtgatt gttttaatgc atcggcaaag
     2761 gcatcagcga gagcttctct ttgtgccggg ctttgaatat tttcaattaa aatgttagtt
     2821 atcatattgc ctaatgccat taacgataaa tccaccggtg ctttatgctt ttctatggtg
     2881 gcgatgaggt cagccaatag ctgctcaaat tgtttggtgt ggtatttaga tttcgttgcc
     2941 atattgaaat aaagatgatc ctataattag gtacaaatag tagcacaaaa ataataataa
     3001 agtagcgtta agcgttattg tttgagtgat ttttgcaaag ttttagccaa aaatgaccgc
     3061 ttgttcaata aatgaggaat tttgcaacta ttttatttta atttgatagg tgttttctgc
     3121 tttctttttt cataaaaaaa gctaaaatga acggctgttc attataggta aggagataaa
     3181 atgtctaggc gaagcgagcc aaaagaagag atggtaaacc gtattttatc ggcaaccgag
     3241 tcgctgattg tgcaagaagg tttgcaaaac ctttcaatgc gtagtattgc aaaagaagca
     3301 gggatcgctt ccggtacatt atatctttac tttaaaacca aagatgattt attgcactca
     3361 ttggctgccc aattactcga atgttataac ggttatatgc attttgagtt taagcctgaa
     3421 atggcgttat ttgagcaata taaagcgttg gtcaataaaa aatggcagtt tttaatcgag
     3481 cgtttagatt tggtaaaaca gtttcaagcg gtgataggga ttgatgaatt gattcgggaa
     3541 accatagctg atgaaacttc cttttggaat aaattaattt tagaagggaa aaagcaaagg
     3601 attattgctg atctacctaa tgagttgctt tatggattaa gcatcggcac attggtggat
     3661 atccaatatc tgcaaaatct gaatcaagaa aatcagtttg atggatattt agacgagatt
     3721 attttacgca cttggaaagc aatcactttt taagtttctt tttattagtt ttatggagaa
     3781 tgtatgacaa cggaaacaca gaagctgggt aaaggcagaa agtttttaat tgtactcaca
     3841 ttgttaatcg tattgattgt gtttgctgca atcgtagggt tacaaaaaat cggggcaatg
     3901 aaaaaagccg aagcagcggc aaatatgccg gaggcggtga gcgaagttac tgctatgcaa
     3961 gtgacgaccc aagaatggac accaaccatt tctgcggtcg gttatattcg cccaaatcaa
     4021 ggggcaatgt taagtgctga aacttcaggc gtggttagcc gtgttttggt cacttcagga
     4081 cagcgtgtga aaaaaggtga tctgttagta gaatttgaca gcagtgttga aattgctaac
     4141 ttgagagcct ctgaagcgca attaccgaat gccaaagcaa atttagagcg ttaccgtaat
     4201 ctgattgcct caaacagtgc ttctaaagcc gagtttgata atgctcaatc tacctacaac
     4261 caattattag ccaatatcga ggcattgcgt gctacgatta aacgccgtca aatttatgct
     4321 ccgtttagtg gtttagcggg tatcgtgaat gtgaatgttg ggcaatacat tacaatgggt
     4381 acggaaattg tgcgtgtgga agatcaatct tcaatgaaag tacgttttac cttgccgcaa
     4441 actaatttag agcaaatctc gattgggcaa aaagtgacag ccgtaattga tgcgttaccg
     4501 gcacaaacct tcccagctaa aattgtggct attgatccgg ctgtggatcg tttaaccggc
     4561 ttaattaatg tggaagcggt gattgaagaa gggcaggaaa aattgctttc aggtatgttt
     4621 gcccgcttaa atgttgcttt accaacagaa accggacaaa tcgtcgtacc acaaatttct
     4681 atcgcttaca ctatgtatgg tgaaacggta tatgtgctgc aaccattatc tgatgaagat
     4741 aaagaaatgg tgaacaaaat ggcggtacaa aacccaagtt tagatgtaaa caaaatgtac
     4801 cgtgcaaaac agatggaagt gaaaacggct gaccgcaaag gaaactattc acaattatcc
     4861 aaaggcgtga aagcaggtga tctgattgta acaggcggtt tacaacgttt aagtaataat
     4921 gcgttggtta aagtttctga tacagaagcc gtaggcatta ccacaccggc gaaaaacagt
     4981 aaactgtagt ggagtgagtt aagtgaaatt tactgacatc tttattaaac gtcctgtttt
     5041 ggcagtttgt atcagcctat tgattacgat cctaggcttg caagcaatcg aaaaattgca
     5101 ggtgcgtgaa tatccggaga tgacggtctc gattgtaacc gtgagtgtta actattcagg
     5161 tgcagatgca cgtttaatgc agacactggt tacctcacag ttagaagagg ctgttgctca
     5221 agcggataat attgactata tgacttcatc aagctctcca agtaccacta cggtaacggc
     5281 aaaaatgaag ttaaataccg atccgaatgc cgcactttcc gatatttcgg caaaagtgaa
     5341 tgcggtacgc tcaaatttac cgagcggtat tgatgatccg tcaattagag tctcaaccgg
     5401 ttcaaatgat gcgttaatgt atatccgatt tgtctctgat gaacttaata catcacaagt
     5461 taccgattat attaaccgtg tagtaaaacc acagttcttt acggtaaatg gtgtttctag
     5521 cgttgatgtg tatggctctg tttttggctt acgcatctgg cttgatccgg ataaaatggc
     5581 gagcaataac ctatcagggg cggctgtatt atcggcatta agtgccaata acttgcaaac
     5641 cgctgcgggt aattctaacg gttactatac ggtttataga aacaaagtac tttctaccac
     5701 gccttctgtg acagagttag aagaggttac ggtttcaacc accaaagatg gaaaaaccat
     5761 caaattaaaa gatattgcga ctgttgagct ggataaatac caagatgcag caagagcaac
     5821 ggttggcggt aaagatgcag ttgtgcttgc tgtttcggta gccgcaacgg caaactcttt
     5881 aaccgtagcg aaagatattt atccgatgtt tgagcaggta ttaaaaaatc taccaagcac
     5941 cattcaagga gatattgttt acgataaaac cattgcgatt gatagttcta tcaaagaagt
     6001 aattaaaact attggtgagg caaccgtcat tgtattggta gtaattatcc tgttcttagg
     6061 ttcattacga gcaatgattg taccggtgat taccattccg atttccttaa tcggggtatt
     6121 attcttcctg caaatgtttg gtttctcgat caacttgctt actttgctgg cgttggtatt
     6181 agcgatcggc ttggtagtgg acgatgcgat tgtcgtactt gaaaacgtag aacgtcacgt
     6241 taaagaaggt aaaacgccat ttgatgcagc gattatcggt acacgtgaaa ttgctttacc
     6301 ggttatttca atgactatta ctctgggtgc agtatattca ccaatggcat taatgaccgg
     6361 ggtaacaggg acactattta aagagttcgc tttaacgctt gccggtgcgg tatttatttc
     6421 ggggattgcg gcattaaccc tttcgccgat gatgtctagc cgaatattaa aagaacataa
     6481 agaaggggaa gagtcagcat ttgcccgcgt ggtgcataga tcactagata aaatgaccag
     6541 ctgctatacc aatatgctaa gcggtattat ggctgttcgt ggtttcgtct tattctttgc
     6601 ggtgctgatc ttcgccagtt taccgatgtt atttggctca ctttccagtg aagttgcacc
     6661 gacagaagac cgtggctttg tggttggtat ttctaatgga ccttcaaaca ccaatttaga
     6721 ttataccgaa gcagcgttag cccaatttaa tcaggaagta actaaattac ctgaagtatc
     6781 ttccttaatg acagtttcag gctttaatgg tgcaaatagt gcattatcga ttattgcatt
     6841 aaaagattgg aatgatcgta gccgtgaacg tgctgcgatt tctaatgatg tggctgcaat
     6901 cggtaaaaaa gtggtgggta tggacgtgaa tgcaattgca ttccctgaaa tttcaaccgg
     6961 tgaaaatggt ctaccattct cattagtgat tactaccgct gatagctatg aaaaattggc
     7021 aatcgttgcc tctgaattct tgaaaaaagc ccaaacttcc ggtcagttct tctttgcgaa
     7081 tttagatttg aaatttgata cggtcacgat gaatatgaaa ttcgaccgtg aaaaaatggg
     7141 tgcttatggc gtgacaatgc agcaggtgag tggcacatta ggggcattct tatccggtgc
     7201 gattattact cgtgtcgata ttgactctcg tgcttacccg attgtgtcgc aagcggtgcg
     7261 taatgatcgt ttaaatcctg aagatttaat gaattactat gtcacgactg caacagggca
     7321 atctatcccg ttaggttcat ttgtgacgat ggaattaaaa acatcaccat cttctttacc
     7381 tcgtatgagc caattaaact cggccaccat tggtggggta gtatctggct caatcggcga
     7441 tgcggtaaat tgggcgaaag cagaattaga tcgcacttta ccatcaggtt atcaatatga
     7501 cttccgtggt gaatctcgcc agttcgttca agaaggtaat gcgatggcaa tgactttcgc
     7561 tctagcagtt atcattatct atcttgtact tgcaattcaa tttgaatctt ggcgtgaccc
     7621 attagtaatt ttggtttctg tgccgttagc tgtgagtggt gcattgttgg taatgaacat
     7681 tccaaccgca atgaaaggct tgtttatggg gattgcagca ggcactggct cgaaagatat
     7741 gatggcattc gccaacggta tttggacggc aggttatacc ttaaatatct attcacaagt
     7801 aggtctaatt acccttgtcg gcttaattac taaacacggt atcttgatgt gtgaagtggc
     7861 gaaagaagag cagttactgc acggcaaatc acgctatgaa gctattttcc acgcagccac
     7921 gattcgttta cgcccaatta tgatgacaac ggcagcaatg attgcaggct taattccgct
     7981 tctgtttgcg gtgggtgccg gtgcaatcgc ccgcttcagt atgggtatgg taatcgtagc
     8041 aggcttggca atcgggacat tgtttactct gtttatcttg ccggttatct acactttctt
     8101 agggcaagaa cacaagccat tacgtgaatt tgacgaggaa aaatatttcc caacgacaaa
     8161 agaagcatag ttttaaatag caaaagagcg tagcgatacg ctcttttttg ttggcttaca
     8221 agcggtcgtt ttttatttat tgtttgctaa aaaatcacaa aatttaaccg cttgaaagta
     8281 tattttcaga tagcgtaaac gtttccctat ttacagaaac ctagttcctc tgtataatcc
     8341 gctcgcaatt ttccagtaca gattttcaat ttaatcattt tttaaggaat aattgcaatg
     8401 ctacgaatta aacaagaagc cctcactttt gatgatgttc ttctcgtccc ggcacattct
     8461 actgtgcttc ctaatactgc tgatctttct actcaattaa ctaaaaccat tcgtttaaac
     8521 attccgatgc tttctgctgc aatggatacc gttacagaaa ctaagcttgc gatctccctt
     8581 gctcaagaag gcggcattgg ttttatccat aaaaatatgt cgattgaacg ccaggcagac
     8641 cgtgtgcgta aagtgaaaaa atttgaaagt ggtattgttt ctgagccagt gacgatttct
     8701 cctgatatga cattagcgga attggctgaa ttggtgaaaa agaacggttt tgcaggctat
     8761 ccggtgattg atgaaaacca aaatttagtg ggaattatta ccggacgtga tacccgattt
     8821 gtcacggatt taagcaaaac agtgcgtgaa tttatgacac caaaagaccg tttagtgacg
     8881 gtaaaagaaa acgcaagccg tgaagaaatt ttccacttaa tgcacgaaca ccgagtggag
     8941 aaagtgctgg tagtgaataa tgaatttcag ttaaaaggaa tgattaccct aaaagactac
     9001 caaaaagcgg aaagcaaacc gaatgcctgt aaagatgagt ttgggcgttt gcgtgtgggg
     9061 gcggcagtgg gagccggtcc gggcaatgaa gaacgaattg atgctttagt aaaagcgggt
     9121 gtcgatgtgc tattaatcga ctcttcgcac gggcattctg aaggtgtatt acaacgtgtg
     9181 cgtgaaaccc gtgcaaaata ccctgattta ccgattgttg ccggtaatat tgccactgca
     9241 gaaggagcga ttgcgttagc tgatgcagga gccagtgctg tgaaagtagg aatcggcccg
     9301 ggttcaattt gtaccaccag aattgtaaca ggcgttggcg tgccacaaat cacggcaatc
     9361 gcagaagcgg cagctgcgct taaagatcga ggcattcctg tgattgctga tggtggaatt
     9421 cgttattcag gcgatatttc aaaagctatt gccgccggtg caagttgcgt aatggtcggt
     9481 tcgatgtttg ccggcacaga agaagccccg ggtgaaattg agctttatca aggcagagca
     9541 ttcaaatcct accgtggaat gggatcatta ggtgcaatga gtaaaggctc gtcagatcgc
     9601 tatttccaat ctgataatgc cgccgacaag ctcgtaccgg aagggattga agggcgtatc
     9661 gcttacaaag gctacttgaa agaaattatc caccaacaaa tgggcggttt acgctcctgt
     9721 atgggattaa ccggctgtgc cactattgaa gaactccgca ccaaagcaga atttgtccgc
     9781 attagtggtg ctggtattaa agaaagccac gtccacgatg tgacaattac caaagaagca
     9841 ccgaactacc gaatgggtta atagcctttc tcactctctc cccttgtggg agagagaccg
     9901 ttttaaatta cgttcagtaa tttaaaacag agagagggaa taagtggtta gattttctta
     9961 aaattttaca aaagaggcta tatgctccaa gctatcattt ttgatatgga cggcgtgatt
    10021 gtggataccg aatatctgga attttcctta caaaaacagt ttattgaaga catcaaagaa
    10081 cacagccgcc cgattacttt agaacaacaa tcggaagtgg taggcaaatg tttaaaagaa
    10141 attccggtga ttatcaaaaa actaagcgaa tccagtttgc cgattgagga aattcgtgca
    10201 cgttactacg cctttttcca agatctgttt agcaaagtgg attttaaaac cattttcaga
    10261 gccgatattc agcaaattat tcaatttgcc aagcagaatc aaattaagct tgcggttgcc
    10321 tcttcttccg ccctttcgca tattgaaaat attctcacgg tttgcggcat taaagacgaa
    10381 tttgatttaa tcgtcagcgg tgaacagttt gaacacagca agccagaccc aaccatttac
    10441 cgctacacct gcgaaaaatt aggcgttgag ccacaaaatg cagtggcgat tgaagactcc
    10501 tactacggaa tgctcgccgc caaaaccgca ggcttaacgg tgattggtta cgaagaaaaa
    10561 cgaatactga ttgaccaaag tttagcggat tatatgggca aagatatgaa agagattttg
    10621 aagattcttc aaaaatgtaa tactccaagt taataaatgg tcgattttta tagaaatttt
    10681 gtcaatgttt ctacttcaag tacttggaac agtctatcgg cttgagtaac ctagaaatga
    10741 gagtggatat tttaatatta ataggataaa tagaatgaaa aaattaagtt taatttcaat
    10801 cgtcgcttta tctgcgtgca gtattttcgg accatcttat tcaggagaaa caacggccag
    10861 tcctttatta aagttggaca cagaaagaaa tataaatc
//
LOCUS       DANLUT010000083        10875 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLUT010000083 DANLUT010000000
VERSION     DANLUT010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10875
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     regulatory      <1..63
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            52..1077
                     /gene="moaA"
                     /locus_tag="PXB38_001578"
     CDS             52..1077
                     /gene="moaA"
                     /locus_tag="PXB38_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL5353888.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            1578..2054
                     /gene="moaC"
                     /locus_tag="PXB38_001579"
     CDS             1578..2054
                     /gene="moaC"
                     /locus_tag="PXB38_001579"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL5353889.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            2047..2292
                     /gene="moaD"
                     /locus_tag="PXB38_001580"
     CDS             2047..2292
                     /gene="moaD"
                     /locus_tag="PXB38_001580"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL5353890.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            2294..2749
                     /gene="moaE"
                     /locus_tag="PXB38_001581"
     CDS             2294..2749
                     /gene="moaE"
                     /locus_tag="PXB38_001581"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL5353891.1"
                     /translation="MFETLIEVQEAEFDQNSIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            2767..3249
                     /gene="ybeY"
                     /locus_tag="PXB38_001582"
     CDS             2767..3249
                     /gene="ybeY"
                     /locus_tag="PXB38_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL5353892.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            3327..5300
                     /locus_tag="PXB38_001583"
     CDS             3327..5300
                     /locus_tag="PXB38_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL5353893.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILHNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSLK"
     gene            5408..6598
                     /locus_tag="PXB38_001584"
     CDS             5408..6598
                     /locus_tag="PXB38_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL5353894.1"
                     /translation="MFSHIQAAPADPILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASALAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(6705..8006)
                     /gene="folC"
                     /locus_tag="PXB38_001585"
     CDS             complement(6705..8006)
                     /gene="folC"
                     /locus_tag="PXB38_001585"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL5353895.1"
                     /translation="MNTLSIPKATDSLETWLSYLEHAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     NLAVITSIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(8022..8918)
                     /gene="accD"
                     /locus_tag="PXB38_001586"
     CDS             complement(8022..8918)
                     /gene="accD"
                     /locus_tag="PXB38_001586"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL5353896.1"
                     /translation="MSWLDRILGRDSSSSSSAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDILARL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            9228..10010
                     /gene="mazG"
                     /locus_tag="PXB38_001587"
     CDS             9228..10010
                     /gene="mazG"
                     /locus_tag="PXB38_001587"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HDL5353897.1"
                     /translation="MATIEQFLDVVNQLRHPEHGCPWDLKQNFDTMLPHLLEETYEVA
                     EAIHTQDRTALREELGDLLLQVVFLSQLAKEEGAFTFDDVVTDIHDKLIYRHPHVFGD
                     VKATNSEEALQSWEAQKANDAKHRSQDSILDDLPFALPALTRANKLQKRCAKVGFDWD
                     NPHDVLAKVEEELDEVKAEIAQYPARSAELAEELGDLLFAIVNLCRHYHTDAEEILRN
                     ANLKFEHRFRKVEKSVKKSGRTVKECKLEELDVIWHKIKVVE"
     gene            10078..10218
                     /locus_tag="PXB38_001588"
                     /pseudo
     CDS             10078..10218
                     /locus_tag="PXB38_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484215.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(10277..10875)
                     /locus_tag="PXB38_001589"
                     /pseudo
     CDS             complement(10277..10875)
                     /locus_tag="PXB38_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT         3290 a         2236 c         2253 g         3096 t
ORIGIN      
        1 caaaggataa cttagaaatg ggttgtcctc tcgtgtttag aaaggtgtca aatgcagtct
       61 attatcccaa ttaaaaacgt gggtgatgat gtcgtttcag gtttagttga tcgctttcag
      121 cgtcaatata cttatttgcg actatccatt actgatgttt gtaacttccg ttgtaattat
      181 tgcttgcctg atggctataa gccgccttca cataagcaaa cttttcttag cgttgatgaa
      241 atccagcggg tggctaaagc ctttgccaat ttagggacgg aaaaaatccg tatcaccggt
      301 ggtgagccaa ctttacgcaa agatttcctc gaaatcgctc acactatttc acaaacaccc
      361 ggtatccgta aagttgccct aaccaccaac ggctatcgcc tagagcgtga tgttgaactg
      421 tggcaacaag ccggtattac cgatattaat gtgagtgttg atagccttga cccacgccaa
      481 tttcaactga ttaccggcga gaacaagttg caatctattt taaagggtat tgataaagcc
      541 tttgaaattg gctacccaaa aattaaagtc aatgcggtgc taatgaagca atataccgcc
      601 cctgaattgg ataaattcct cacttggatc aaagacaagc cgattcaaat gcggtttatt
      661 gagctgatgg aaaccggtga aatggatagt ttcttccaag ctcaacatct ttctggtcaa
      721 tcggtgatga cccgcttatt acaagaaggc tggcaattac aacccaaagc gatgtctgac
      781 ggcccggcaa aagtgctttc tcaccctgat tttaaaggcg aaatcggctt aattatgccc
      841 tacgagaaaa atttctgtgc ctcttgtaac cgcttgcgtg tttccgcact tggtaaactg
      901 catctttgct tatttggtga agaagggatt gatattcgtg atttactggc aagcgatgag
      961 caacagttac agcttgaaac ccgcctaaaa tcttccttac aaggcaagcg agaacaccac
     1021 tatttgcata ttggggatag tggggtcagg aataatttgg cgagtatcgg tggttaaaca
     1081 accaccgagc gtgttttttc tgttactttt ctttgcttcg ccaaagaaaa gtaaccaaaa
     1141 gaaaggcgac cccagatttt ccttaatcct tcgcttgttg ctaacttttg ggacgaactt
     1201 ttcaaactcg ccaactgcgt tggctcaaac acgaaaagtt gtcctcaaaa gtttacgcaa
     1261 tcgctacggc ggaaaatagg ggcaagcggt acattattta agatttttgc aagtttttat
     1321 ttaaaaataa ccgcttgtaa tgttccagct tctcccttct gaaccgcctg agcgactttg
     1381 aatttatagg aaaaatttag tgtttgagcc aacgaagttg gcgagtttta aatttttccg
     1441 ttaaacaaat tcaaataaaa tgaagatagc ggtgaagtag ggtgtgcttt ctttggttac
     1501 tttctttgca caagcaaaga aagtaacaag aaaacgctca atattaattt tacaatcaaa
     1561 tttaaagaga caaacaaatg acaaccttca cccacatcaa ccaaaacggc gaagccaata
     1621 tggttgatgt ttcaatgaaa caagaaaccg tacgcattgc ccgagcggag gcatttgtgc
     1681 gaatgaatgc cgaaacatta caaatgatcg tcagtggtaa tcaccacaaa ggcgatgtat
     1741 tcgcaaccgc tcgaattgcc ggtattcagg cggcgaagag aacttgggag ctgattccac
     1801 tctgccaccc gttattgctt tctaaagtgg aagttcaact ggaggcgttg ccggaaagca
     1861 accaagtgcg aattgaatca ctctgtaaac taaccggcaa aaccggcgtg gaaatggagg
     1921 cattaaccgc agctagtgtt gctgctctga ctatttacga tatgtgtaaa gccgtgcaaa
     1981 aagatatgat tattgaaaat gtaagattac ttagtaaaag cggcggaaaa tcaggagatt
     2041 tcaaggttga ttaagatact ttttttcgcc caagtgcgtg aacttgtggc aacggataga
     2101 ctagatgttg agcctacttt taccactgcc gaagcgttgc gtgaacactt aagccaacag
     2161 ggtaaaaaat ggcaacttgc ccttgaaaaa ggcaaactgc tggttgcaat taatcaaacg
     2221 atctgcccgc ttgaaacgga gatcaaagac ggcgatgaag tggcattctt cccaccggta
     2281 accgggggct aaaatgtttg aaaccctgat tgaagtacaa gaagctgaat ttgaccaaaa
     2341 cagcatttac caatggctca gtgaacaaca tagcgtgggg gcagccactc tattcatcgg
     2401 taaagtacgt gaaatgaatt tgggcgataa tgtttccggt ttgtttcttg aacactatcc
     2461 ggcaatgact aaaaaagcat tgcaagaaat tgtggctcaa gctcgcactc gttgggattt
     2521 acaacgcgtt gcggtgattc accgcattgg gcaactgcat accggtgatg aaatcgtatt
     2581 agtcggtgtg agttctgctc atcgaggtga tgcctaccac gccaacgagt ttattatgga
     2641 ttatctcaaa accaaagccc cattttggaa acgagaacaa acccaagccg gtgaacgttg
     2701 gattgaaggg cgtgagagtg accaacaagc cgccaaaaaa tggcaataat ttgcaaaagg
     2761 taacgaatgg aaaatttata tattgatttg cagatcgcct gcgaaaatac cgaaaactta
     2821 ccaagtgaac aacaatttta tacttgggta caaaaagccc tcgcagttga ggcaaaaacc
     2881 gatgatttcc ctgagagtga gatcaccatt cggattgtcg atgaagcaga aagccacgag
     2941 ctaaatctga cttatcgtgg taaagacaag ccaaccaatg tgctatcttt cccgtttgag
     3001 gcccccgaag gaatcgaaat gccactattg ggtgatttag tcatctgtcg tcaagtaatg
     3061 gaaaaagagg cggaagaaca aggtatttca gccgaatccc attgggctca tttggcgatt
     3121 cacggcacac ttcatctgct cggctacgac catattgagg aagatgaagc agtggaaatg
     3181 gaaagcctcg aaaccgaaat tatgcaaagt ttagggtatg aagatccgta tctttcagaa
     3241 aaaatatagt cttgtagggg agggtcctgt gccctccagt actccattat aatcggacag
     3301 gcacaggagc tgttcctaca agttatatga gaacgatcgc aatcataaca tctcctaaca
     3361 atgccgactt tattcaacaa ggctattttt acattcccga aaatcatcag cttaaagcta
     3421 tccccttttc caatgccaaa acgattttag gacaagaata cccttttgcc atttatacta
     3481 tgcaagcaga aaatggggtg aattttaact tagatgcttt tgcaatactt gccggcacta
     3541 ttcaagaaaa cggtacttta tttttgcttt gtcctcagtg ggataatttg gaaaatgaat
     3601 tagatttcga tgcgttacgt tggaacgaaa atcaggctat tgcctgcccg aatttctatc
     3661 aacattttaa acaattagtc gctaaatttg gttttgaagt cagaactaat ttgccaaaat
     3721 taccggctac aagcggtcaa attccttcaa aaatttacca attaacgcaa gaacagcaaa
     3781 atattttgca aaatctaccg cttgatcctg ccgatattca tttgattacc gcccctcgtg
     3841 ggcggggcaa atctaccctt gcagggcgac ttgcaaaagc gttacccgca caaaataagg
     3901 tattaattac cgcacggtct tattctgcat tgcccagttt ttggcgttcg gcagagcaaa
     3961 aaatcccttt tttcgcacct gacaatttaa tcgagcaagt taaaagtaaa aacatttcac
     4021 ctaaccaatg gctctttatt gatgaggcag ctagcctacc cttgccgata ctccacacac
     4081 tttgtgccta ttttgaaaaa gtggttttaa ccacaacaac ccaaaattac gaaggcacgg
     4141 ggcgaggatt tgagctgaaa ttcccggtaa tgttggataa accgtttaaa cattggacgt
     4201 tatctcaacc attgcggtgg agcgaaaatg atcctctcga agcatttgtg actgagttgc
     4261 tattactttc cgaagaaaaa tctcccctct ttagcaaaga ggggaagggg gagatttatt
     4321 cgcttcgctc acactatgtg ccgttgctaa agcaacgttc aaacgcaaag cgtttgtggc
     4381 agaagcaatt atcgaagaat ataagttatt cgaataagca tttacaggaa aaaatcgctt
     4441 tctaccactt actcgccaac gcccattaca aaaccactcc aactgactta cgccgtttat
     4501 ttgatggcga aaatcagctt ttgttttcac aacaggaaaa cgagcaactt atcggcggaa
     4561 tttgggcaat gcaagagggt ggtttagatg aaaaattaac ccaagccatt tggctagggg
     4621 aacgccgtcc gcaaggcagt ctagtggctc aatatctctg ttttcaaggg aatttaccgc
     4681 aggcttgcaa attgcattcc attcgcattt ctcggattgc ggtattgcct gaaaagcaaa
     4741 atcaaggcgt tggcaagcgg ttgatttctc agtttatttt gcacaattcg gtagaaaaac
     4801 gaccgcttga ttttatctct gtgagctttg ggctaactac tccactccac gcattttggc
     4861 aatcttgtgg tttccaactt gtgcaaatca caccgaataa agaggcaagc agtggttatc
     4921 aaagtgcaat gatgatttac ccgatttcgg agcaaggaaa gttatttgca cagcaggcaa
     4981 cccaagcctt tgccagagat ttcgcccttc agccattttt cacggaaatt tgtgaggaat
     5041 tgcaaaattt cgaacaattt cgaccgcttg ccacacacaa tttagatgaa cgtgattgga
     5101 aaaatttaac cgcgtttgct catggcaagc ggacgttttc agcggcgtat gtgagtttaa
     5161 aacggcttta tttatcggat aaagcacgct tttcagagct ggatattttt gaacgaaaag
     5221 ggcaaaaaat ctccaaaatg gaggtggaaa attatcgaaa actcgttttg caaaacttaa
     5281 acaataaatc attaaaataa tttataggtt ttattacatt ttttgtgttt ttgctcttgc
     5341 taaatctgca atttaatcgt ataaattcac tgtttatttt tcattttgat gaggaactcc
     5401 aatgtcaatg tttagtcaca ttcaagctgc tccggcagac ccaattttag gcttaggtga
     5461 agcgtttaaa gcagatagcc gtgaaggtaa aatcaacctt ggtatcggtg tttatatgac
     5521 cgatgaaggc aaaaccccga ttgtcaaagc ggtaaaagaa gcagaaaaac gtttattaga
     5581 gacggaaaac agtaaaaatt atttaaccat tgacggtgtt caagcattca atgcggcaac
     5641 gcaagcgtta ttatttggcg aaggggctga agtgattacc tcaggtcgtg ctaaaactgc
     5701 acagagttta ggtgggacag gggcattacg cattgcggcg gaatttatca aacgtcatac
     5761 gaatgcgaaa aatgtatgga tttcaacccc gacttggcca aaccataacg gcatttttga
     5821 tgcagtaggc gtgaatgtaa aaggctatcg ctactacaat aaagagacta acggtttaga
     5881 ttgggaaaat ttaattgccg atttaagcca agcggaagcc ggagatgtgg tgttattgca
     5941 cggttgctgc cacaacccga ccggaattga cccaacacct gcacaatggg aacagttagc
     6001 agcattatct gccgaaaaag gctggttgcc gttatttgac tttgcttatc aaggctttgc
     6061 aaacggttta gaggaagatg cttacggttt acgagctttt gtgaaaaata accgtgaatt
     6121 gttggtcgca agctcattct cgaaaaactt tgggttatat aacgagcgtg tcggtgcatt
     6181 taccctaatt gcagataatg ctgatgatgc caaccgtgct ttcactcaaa tcaaatcgat
     6241 tattcgtgta ctttactcta acccatctgc tcacggtgca agtgcactag cagttgcatt
     6301 ggctgatcct gaccttaaag cacaatggat tgcggaatta gatgaaatgc gtaaccgtat
     6361 caaagaaatg cgtagccaat tagtgcagaa attaaaagaa aaaggggcaa acaaagactt
     6421 ctctttcatt actgagcaaa atggtatgtt ctcattcagt ggcttaacac cggagcaagt
     6481 ggataagtta aaagatgagt ttgcaattta tgctgtgcgt tcaggcagaa tcaatgtagc
     6541 aggcattacc agcaaaaaca ttgatgctct tgccgatgcg attgtgaaag tgctttaatt
     6601 aaaccttaaa gatatataga ggcataagcc tgagtgcttg tgcctctttt ttatctttta
     6661 ggtacaagtg tggacacttg caccaacgtt gattattcgt agaactaggt ttccaaccaa
     6721 agcataaaat ctgctaccgt atgaaatgag ccgaacacca gcacaatatc attttcgttg
     6781 gctgtttcaa acaatactcg gcttgcctgt gccacatttt catagctaca agcggttgaa
     6841 tttggcaaaa cgtttaccaa tttcgctaac accgcctcgc ctgtttgtcc acgccaacaa
     6901 tctagccctg cacaatgcca ttcatcaata atattagcta atggctcgac aataccggat
     6961 aaatccttat cttctaacgc actaaacacc gcatagattt tttgatttgg ttgctttaac
     7021 tcccgcagtt tgtcagctaa ataacgtgct gcgtgtgggt tatgccctac atcaataatt
     7081 acttttgcag ccggtttagg ttgagaaaaa tgagtaaaat cggtatccgt cagggtttga
     7141 aaacgccctg tcatttgagc ttcatttaag gcttgtcgaa taatcttttc atcaatttca
     7201 aatggcagtt gcattaatac tgctaatgcg gtgccggcgt ttggaatcgg aataagcggg
     7261 attggtaaat cggtaaagga tttttcttca gaataccaat gaaacagatt attcttaatt
     7321 tcaaactgcc agtctttacc ccggtaaaaa gcgtgacaat ttaacgaatc agcaatctgt
     7381 ttaatcgaat gagggcaatc aggctcgccg atgacaaccg gaatattttc acggaaaatg
     7441 ccggctttct cacgcccgat gtcttcacgg ttatcgccta aaaatgcaac gtggtcgata
     7501 tcaatcgagg taatcacggc aaggtttgga tcaataatat tagtggcatc taatcgccca
     7561 cctaatccga cttctaaaat cacaatatcg agctgatttt gtttgaatag ctcaaatgca
     7621 gacagcgtac taaactcaaa ataagtgagt gaagcggtct tttttgcatt aatttttgca
     7681 aatgcttgga cgtggtcggc atcaggtaat acttcgccgt taattcgcac ccgttcatta
     7741 tagtgaatta agtgcggtga agagtaaacc ccaacccgaa atccggcttt taataaggta
     7801 acttctaaca aacggcaggt cgaacccttg ccgttagtac cggcaacggt aatcacataa
     7861 ggggcaggct tgagtaaatc cagctctgtt gcgaccttac gaatacgatc taagcccata
     7921 tcaatcggtt tagaatgggc gtgttctaaa taggaaagcc acgtttccaa agaatccgtg
     7981 gctttaggta tgcttaatgt attcattcag attaagttaa attattctgc gttttctaca
     8041 accaattccg ccactttaaa cggcgttggc tgattggtta attttgcaca aagacgggca
     8101 aggatatcac gcatctcttt acgatgcacg atcatatcaa ctgccccgtg ttctaataag
     8161 aactcggcac gttggaaacc ttccggcagt ttttcacgta cggtttgctc aattacacga
     8221 ggaccagcaa agccgattag ggcttttggc tcagcaatat tcacatcgcc cagcattgcc
     8281 aaacttgcgg aaaccccacc taaagttggg tcggttaata cagaaataaa cggtacgccc
     8341 tgctctttca ttttggctaa aatcgcactg gtttttgcca tttgcattaa agagaataac
     8401 gcctcttgca tacgagcccc gcccgatgcc gaaaaacaga taaacggaat tttttcagct
     8461 aaagcttttt ccgcggcttt cacaaatttt gctcccacca cagaacccat tgagccgccc
     8521 ataaactcaa agttaaagga ggccgtaacc accggcatat tatgcaatgt accggcaagc
     8581 acgataaaag aatctttctc accggtttgt ttttgtgcgg cggttaaacg atctttatat
     8641 ttctttaaat ctttaaattt caacacatct tccggctcta agtcggcagc gatttcgacc
     8701 gcagaatctt tatctaacaa attcaataaa cgggtgcggg catcaatacg catatgatga
     8761 tcgcattttg gacaaacctg ttggttgcgt tgtaattctt cgctatagag aacttgttca
     8821 caacttgtgc attttgtcca cacgccttcc ggcacttttg attttgcact gcttgatgac
     8881 gaagagtctc tacctaaaat tctgtctaac cagctcatta ttattccttt tggattgagt
     8941 tgttgggttc actaaatggt tgctattaaa gcataattta tcggtttttg atatgttttc
     9001 ttgacatatc agatcactaa ctatgtgtat aagttcgata aaaaaacgca atcagaagaa
     9061 tgattaacat caccacaatt tgaattaagc gttttttggt taatttttcc gctgccattg
     9121 ctctgctcat acttaataaa tttccgcatt ataagcgaaa aagtacgggc tatggtagaa
     9181 tttgcaaaaa tttgatcaaa aataaccgct tgtaaaaagg aaatactatg gcaaccattg
     9241 aacaatttct tgatgttgta aaccaacttc gccaccctga acacggctgc ccgtgggatc
     9301 tcaaacagaa ttttgacacg atgttgcccc acttgttgga agaaacctat gaggtagcgg
     9361 aagcgattca cacccaagat cgcactgctc tgcgtgaaga attgggtgat ttattactgc
     9421 aagtggtctt tttaagccaa ttagcgaaag aagaaggagc ttttacgttt gatgatgtag
     9481 taaccgatat tcacgataaa ctgatttacc gccaccctca cgtttttggt gatgtgaaag
     9541 ctactaatag cgaagaggcc ttacaaagtt gggaggcaca aaaagcgaat gatgcaaaac
     9601 accgtagcca agattctatt ttagacgatt taccttttgc tttgcctgct cttacccgtg
     9661 caaataagct acaaaaacgg tgtgcgaaag tcggattcga ttgggataac ccgcacgatg
     9721 tgctggcaaa agttgaagaa gaactcgatg aagtcaaagc agaaatcgca caatatccgg
     9781 ctcgctccgc cgaacttgct gaagaattag gtgatctctt gtttgcgatt gtaaatttat
     9841 gccgccatta tcataccgat gccgaggaaa ttttacgcaa tgcaaatcta aaatttgaac
     9901 atcgctttcg aaaagttgaa aaatctgtga aaaaatcggg aagaactgta aaagaatgta
     9961 aattagaaga attagatgta atttggcaca aaataaaagt ggtagaataa aaaacatcaa
    10021 ttgttataat aatttttacc tttgtaaagt tagttttaat tttataggaa atattttatg
    10081 tcaaaaatct tattaataga tgatgatatt gagtttactg agctactaac tgaattactt
    10141 tcattagaag gatttaaaat gaaagttgtg cataatggtt tagaaggctt aaatgagtta
    10201 gagtctaatc aatatgattt gtagaagatc aaacctaatc tgacagttcc cgtttaaaat
    10261 tatagtgtct gtcagattaa tttgagctta aatgcttttc cgcccaaatc cgttttccat
    10321 caagtaatgt ttccatcggt gttctgccgc agcacatttt tccttgatga gttcaatgat
    10381 gattataata cattaaccat tcatctaaat ccgcttgtaa tgtcgctaaa tccatataaa
    10441 ttgtcttcct aaatacgact tggtaaaact cttgtaaaat cgtcttatgg aagcgttcgc
    10501 agataccatt cgtctgggga tgcttcactt tcgttttcgt atgctctatg tcatttatcg
    10561 ctaaataaag ctcataatcg tgattttcca ccttgccaca gtactcactg cctcggtcgg
    10621 taagaatacg caacatcggt aatccttggg actcaaagaa cggtaggact ttatcattga
    10681 gcatatctgc tgcactaatt gctgtcttca tcgtatacag ttttgcaaat gcgactttac
    10741 tataagtatc aataaaggtc tgttgataaa tgcctccaac ccccttaaga ttccccacat
    10801 agaaggtatc ttgtgaacct agatagcccg gatgagccgt ttcaatttcg ccacaagcca
    10861 catcgtcttc ttttt
//
LOCUS       DANLUT010000084        10842 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLUT010000084 DANLUT010000000
VERSION     DANLUT010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10842
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..937)
                     /locus_tag="PXB38_001590"
     CDS             complement(<1..937)
                     /locus_tag="PXB38_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5353898.1"
                     /translation="MSKLSDFISIKHGFAFKGEFITTEENANCLITPVNFSIGGGFKS
                     DKFKYYTGEIPEKYILQPNDLIVTMTDLSKQADTLGYPALVPNISGKKMLHNQRIGLV
                     EFLDNELDKEYLYFLMRTKEYRHQILSTATGATVHHTSPSKILDFEFEKPDLQTQKLI
                     AQYLMILEEKIQLNTQTNQTLEAIAQAIFKSWFVDFDPVRAKAQAILDGKTSDEANLS
                     AMAVFSGKAIEDLSQTEYQELWEIADAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTP
                     PRKESEWFSDNANDTEWISIKDMGNQGLFITESSEY"
     gene            complement(939..2597)
                     /locus_tag="PXB38_001591"
     CDS             complement(939..2597)
                     /locus_tag="PXB38_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5353899.1"
                     /translation="MPNNTARPALDNTVSQAFLNDLDQTLWTAADKLRKNLDAANYKH
                     IVLGFIFLKYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQEFSQILAEELEQRDY
                     YAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLK
                     GVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFA
                     LAEGKKGGQYFTPKSIVTLIVEMLKPYSGRIYDPAMGSGGFFVQADRFIPAHQGNRNA
                     ISVYGQESNPNTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQ
                     KAWWSESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGE
                     GDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKKEVLFINATQIGYMK
                     DRVLRDFTADDIAKISDTYHNWQKQDGYENIPAFCYCATLDEIAKNDFVLTAGRYVGA
                     AVEEDDGVPFAQKMQELTALLNEQFRQGRALEEKIVANLKGLGF"
     gene            2758..3135
                     /locus_tag="PXB38_001592"
     CDS             2758..3135
                     /locus_tag="PXB38_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL5353900.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNTEITGNPKELEAIFVE
                     IEKCRVAFPNHYECIFEGREYSLYFDYDEVMVKANNLDTAFDENEMEDGFQFYNEESI
                     AFCGLDDFEKLLKAYQYFVQTYH"
     gene            3228..3815
                     /gene="yihI"
                     /locus_tag="PXB38_001593"
     CDS             3228..3815
                     /gene="yihI"
                     /locus_tag="PXB38_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL5353901.1"
                     /translation="MSRTKKTRRITDIMPARKADKPAKPTPKLGGGKKLKLTRYELDV
                     LAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            3829..4296
                     /locus_tag="PXB38_001594"
     CDS             3829..4296
                     /locus_tag="PXB38_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL5353902.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            4296..5663
                     /gene="hemN"
                     /locus_tag="PXB38_001595"
     CDS             4296..5663
                     /gene="hemN"
                     /locus_tag="PXB38_001595"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL5353903.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANLDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLQRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALSQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            5737..8070
                     /gene="lptD"
                     /locus_tag="PXB38_001596"
     CDS             5737..8070
                     /gene="lptD"
                     /locus_tag="PXB38_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL5353904.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIESDSAVINQPRDATYTGDVTIKQGNRSIWAEQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGADATINLLSKDANLTNANYQLVGRQGRGTAESGEFGNSKRTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYGIN"
     gene            complement(8212..10812)
                     /gene="ppc"
                     /locus_tag="PXB38_001597"
     CDS             complement(8212..10812)
                     /gene="ppc"
                     /locus_tag="PXB38_001597"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL5353905.1"
                     /translation="MLGEFLGETIRDAQGNYILELIESIRVLSRNSRAGDENAREQLL
                     DKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGSRSLDSLFLRLKSQ
                     NIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNLLEHDDLTEAESYK
                     IKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVPEFCRQLNFYLEKH
                     FGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKATELFLQDIKNLAEE
                     LSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEGKISTIDESDILTS
                     DQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRLDIRQESTRHEMAI
                     AEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPETKEVLDTCKIVAEQ
                     PEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLGDLDHSEKVMTDLF
                     NIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNLCEKYNIELTLFHG
                     RGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVESLELYASAI
                     LEANIFPPPEPKQQWRDVLAKASDISYQIYRDMVRGELDFVPYFRSATPEQELSRLPL
                     GSRPAKRNPKGGVDSLRAIPWIFAWMQNRLMLPAWLGAGQALQQLIDEGNETLLKEMC
                     NEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLRTQLQADLKTVLAL
                     AHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENADPVLEQALMITIT
                     GIAAGMRNTG"
BASE COUNT         3127 a         2124 c         2420 g         3171 t
ORIGIN      
        1 ggtattcgct actttccgta ataaacaatc cctgatttcc catatcttta atagaaatcc
       61 attctgtatc atttgcatta tcagaaaacc attcactctc ttttcttggt ggggttttcc
      121 caatgccaac atcaaataaa ttgtctgctt gattgaattt ccagccaata ggtaaccctt
      181 catctccaaa ctcacttggg aaggcatcgg cgatttccca aagctcttgg tattcggttt
      241 ggcttaggtc ttcaatcgct ttgcctgaaa agaccgccat tgctgataaa ttggcttcat
      301 cgctggtttt gccgtccaaa atcgcttggg ctttggctcg tacagggtca aaatccacaa
      361 accaactttt aaaaatcgcc tgagcaatgg cttctaaggt ttggttggtt tgggtgttga
      421 gttggatttt ttcttccaat atcattaaat attgagcaat tagtttttgg gtttgcaagt
      481 ctggcttctc aaactcgaaa tctagtattt tgctagggga agtatgatga acagttgcac
      541 cagtagctgt acttaatatt tgatgtctgt attctttcgt acgcatcaaa aaatacaaat
      601 actctttatc tagttcgtta tctaaaaatt caaccaagcc tatcctttgg ttatgcaaca
      661 tttttttgcc tgaaatattt ggcactaatg ctgggtatcc caatgtatcg gcttgcttgc
      721 ttaaatccgt cattgttaca attaaatcat ttggctgtaa aatgtatttt tcaggtattt
      781 ctcctgtata atatttgaac ttatctgatt taaaaccgcc accaatagaa aaattaactg
      841 gcgtaatcaa acagttggca ttttcttctg ttgtgatgaa ttcaccttta aatgcaaatc
      901 cgtgtttaat ggaaataaaa tcggatagtt tactcatctt aaaaccccaa cccttttaaa
      961 tttgccacaa tcttttcttc caatgctcgc ccttgtctaa attgttcatt taaaagtgcg
     1021 gttagttctt gcattttttg agcaaacggt acgccgtcat cttcttcgac tgccgctcct
     1081 acatatcgcc cagccgttag cacaaagtca tttttggcga tttcgtccag cgtggcacaa
     1141 taacaaaacg cagggatatt ttcgtagccg tcctgttttt gccagttgtg gtaggtgtcg
     1201 ctgattttgg caatgtcatc agcggtaaaa tcacgcaaga cacggtcttt catatagccg
     1261 atttgggtag cgttgataaa cagcacctct ttttttctgg ctttggcttt attgataatc
     1321 caaatgcagg cagggatttg ggtgttggtg aatagctgat tgggcagggc aatcatcgct
     1381 tcgacaaggt cggcttgcac gatgtttttg cgaatgtcgc cttcgcctga ggtttggcta
     1441 ctcattgagc cgttggcgag caggagtgcc attttgcctt tgggggagag gtggtaaatc
     1501 atatgttgca gccacgcaaa gttggcgttg ccttgcggcg gtgtgccgta tgcccagcgt
     1561 gggtcgtttg ctaggctttc actccaccac gctttttggt taaagggggg atttgccatc
     1621 acaacatcca tttttttgtc gatgtgcaaa gggtttagta gggtatcttc gggcttgtcg
     1681 ccaaagtcaa agggaatgcc acgaatcgcc atattcatca ccgccagttt gcgggtgttg
     1741 gggttggatt cttgcccata aaccgaaatg gcgttgcggt tgccttgatg tgccggaata
     1801 aagcggtcag cctgcacaaa aaatccgccg ctgcccattg cagggtcata aatccgccct
     1861 gaatagggtt tgagcatttc aacaatcagg gtaacaatgg atttgggcgt gaagtattga
     1921 ccgccttttt tgccttcagc tagggcaaat tgtccaagaa agtattcata gacgtgccct
     1981 aaaatgtctt tggcttgcag atgcacaggt tcgccattgt gcataggctg ggtgaaattg
     2041 gtgcgtgaga acaggtcaat taagcctgtg agcatttcat caggcacgcc aaagccggca
     2101 atgcgttgga gtacgccttt gagtttgggg ttttcccgtt cgatggcttc aaaggcatca
     2161 tcaatcaagc ggctgacacc tttaaatttg tctccccaag gcaattcatc gccaagattg
     2221 agtttgctta atgatttgat gttgtcccag cgggcttgct ccggcaccca aaagatgttt
     2281 tcggcagcgt agtaatctct ctgttccaac tcttcggcaa gaatttggct aaattcttgt
     2341 tcgtcaaata gtgcagggtc aagatagagt tcgctttcgg gggtggtaag ctgggttttt
     2401 agcttggctt ggaaatcggt aaagctgtcg gagatgtatt ttaggaagat aaagccaaga
     2461 acgatgtgtt tgtagttggc ggcatcgagg tttttacgca gcttgtcggc ggctgtccag
     2521 agggtttggt cgagatcgtt taaaaaggct tgactgaccg tattgtcaag agcaggtcgt
     2581 gcagtgttat ttggcatagt ggttcctttt ggatgtatca atactaaaat gacctgtatt
     2641 ttagcagatt tacggataat cgaggaactg ataacattta aaaattagcg ttttgcaaaa
     2701 ttttccaaaa aaagaccgct tgttaggcta taatagccgt aatagaggag aaggtgtatg
     2761 gaatatcaat ttacccatag tattcacggg gtggtggcaa aatgttcaat ggatcacgaa
     2821 gcatttgccc gctggttgaa tacggaaatt acgggcaatc cgaaagagct agaagctatt
     2881 tttgttgaaa ttgaaaaatg tagagtcgct tttcctaatc attatgaatg tatatttgaa
     2941 ggtcgtgagt acagcctcta ttttgattat gatgaggtga tggtaaaagc gaataattta
     3001 gataccgctt ttgacgagaa tgaaatggaa gatggctttc aattttataa tgaggaaagc
     3061 attgcttttt gtggcttaga tgattttgaa aaactgttaa aagcctacca gtactttgtg
     3121 caaacttatc attgatggga atgctgaatt aaaacgatac tattaaggga accgaattcc
     3181 ctgtagaata gtgatttatt aaaattttat taatcgatta aagaattatg agccgtacta
     3241 aaaaaacacg ccgcattact gatattatgc cagcaagaaa agccgataaa ccagcgaagc
     3301 caacacctaa attaggtggc ggcaaaaaat tgaaactcac tcgttatgag ttagatgtgt
     3361 tagcccgtga ggaaaaacgt aagcgtaaac ataaaggctt gccgacaggc tcacgcaatg
     3421 ctgatccggc agagcagaaa aaagcagtgg tgaaagaggt gaaagatccg cgtatcggta
     3481 gccgtaaaaa agtgccgtta atggtggaat ttgtgaacca gccggaaaaa gggcggacga
     3541 ttaaggctgt gccggttgag ccaatcaaac caacgctttc accggaacaa gagctggagc
     3601 agttagaaaa taacgaatgt ttaaatcagt tgttagatga tttggaagcg ggcaaaacct
     3661 tatccgcaga agatcagaaa tttatgaatg agtgtttaga tcgcattgat gaattaatga
     3721 ctgagcttgg catcgaatat gaagatgaag agggcgataa tggtgatgcg ttattacgcc
     3781 aattcgaaac gatggatatt aataaattcc gctaggtagc cgattatgat gctaagaata
     3841 ttcctgatgg tgcttgccgc tttgatttta atttcgctgg gcgggtatgc actgcactta
     3901 atgctgaaag tgcgagctca gaaaaagcac gaacaagcac tgattgaaca ggcaaagcaa
     3961 gcacaaaaag atcgttatat tcggatttta gacagcattg aagttattgc tcgggcaatg
     4021 atttccgaac agtgcgattt ttcggaaggc gttttacgtt taaaaccgct attagatgtt
     4081 ctcggcagaa aattaagcga ctatacggcg atgtgggcgt tgtatggcgt ggtggaaaat
     4141 atgccgattt tagatgaacg caaaaattta aaacgtaacg aaagaatgaa gttggattta
     4201 gagcgggaag caaaagaagc ggagcttgaa tcagacatca aaaatgagtg ttaccaatta
     4261 ttaaaagata ttgaagaaat gagaaaggca atctaatgtc agaaattatt tgggatttag
     4321 cccttattca aaaatataac cattcagggc ctcgttatac ctcttaccca acagcgttgg
     4381 agtttaacga aaattacacc aatgaagatt ttattcgtgc tgcagctcgt taccctgagc
     4441 gtccgctttc gctttatgtg catattccgt tttgccataa actttgctat ttctgtggct
     4501 gtaataaagt gattactcgt catcgccata aagttgaaat ttatttagat tatttagagc
     4561 gtgaaattaa aactcgcgca cctctgtttc aaaatcgttt agtgacccaa atacactggg
     4621 gcggcggtac gccgacttat ttagacgaag atcaatcggc acgtttaatg caaatgctac
     4681 gagccaattt ggatgtgagc gatgatgcgg aaatcagcat tgaaatggat ccgcgtgaaa
     4741 tcgaattaag tatgttggat cacctgcgtg ctatcggttt taaccgtctg agtatgggta
     4801 ttcaggattt cgataaagaa gtgcaacgtt tggtgaatcg tgagcaagat gaagagttta
     4861 tttttgcctt gatgaaacgg gcaaaagaac ttggttttgt ttcaactaat gtggatttga
     4921 tttacggctt accaaaacag aatgtggaaa gctttatgta caccttgcaa cgtgtagtag
     4981 agttaaaccc tgatcgtatg agcgtattta actatgctca cttgccaagc cgttttgctg
     5041 cacaagtgaa aattaaagaa gagttgttgc cggctccgga aactaaattg accattttgc
     5101 aaaattccat cgaattttta ggcaaaaatg gctataagtt tatcggtatg gatcactttg
     5161 ccaaacctga tgacgagtta gccattgcac aagaaaaagg cattttacac cgtaacttcc
     5221 aaggctatac cactcaagaa gagtgtgatt tattgggaat gggcgtatcg gcaatcagct
     5281 tactcggcga tacttacgct caaaaccgca aagaattaca acaatactat gctgatgttg
     5341 aaaccaacgg cattgcgttg cataaaggca ttgctttaag ccaagatgat tgcattcgcc
     5401 gtgatgtgat aaaagccttg atttgtaatt tcaaattaga ttttgctact atcgaaaagc
     5461 aatatggcat tgattttaaa cgctattttg ctgaagattt agctttctta gcgccgttgg
     5521 cggaagatga attattaacg atgaatgacg acagcattgt ggtttctcca cgagggcgtt
     5581 tattgatccg taatatttgc ttatgttttg atgtttattc aagacaatta gcgagaagac
     5641 agcagttttc ccgtattatt taatgagcaa gcggtcgatt ttggtaaaaa atttgcaaaa
     5701 acagaccgct tgttcccggc ttataaagga aaaatgatga aacagcgtta tagcttactt
     5761 tctcttgctg tgatggcagc ttgttatagc aacagtgccg cagctgattt aaagcaacaa
     5821 tgtttacttg gcgtgccgca ttttcagggc gaagtggtag aaggtgatca acttagaatg
     5881 cctgttacca ttgagtcaga cagtgcggtg attaaccaac cgcgtgatgc cacctacacc
     5941 ggtgatgtga ccatcaagca aggcaaccgc tcgatttggg cagagcaggt gcgggttgag
     6001 caagatggcg aaaatgcccg tatggcgtat ttgcagggta attttaacta ccaagataat
     6061 ttgattcagg caaccggtgc ggatgcgact attaatttgc tatctaaaga tgcgaattta
     6121 actaacgcca actaccaatt agtcggcaga caagggcgtg gcacggcaga atccggcgag
     6181 tttggcaaca gcaaacgtac gttgaaaaac gccagtttca cttcgtgctt accaaatgat
     6241 aattcgtggc aaattgaagc gaatgaaatg attcagcacg ttgatgaaga atatgctgaa
     6301 atgtggcacg cccgttttaa agtgctggga atgccggtat tttattcgcc ttacttacaa
     6361 tttccgattg gcgaccgccg ccgtagtggg ttattaattc caagttttga gcgttcaagc
     6421 aaaaacggct ggacatattc gcaaccgttt tattggaata tcgcaccgaa tatggactcg
     6481 accatcactc caacttacta ttcacgccgt ggttggcaaa tcagcccgga atttcgttat
     6541 ttaacgaaaa tcgggcaagg cttagtggca accgaatata tggcgaaaga tcgtttaagc
     6601 gagtaccaac cgggaaatga tgatcgtaaa cgctatttat tccactggcg tcacgcaatg
     6661 agttttttaa ccgattggcg tttctcggtc gattacacca aagtgagcga cagacgttat
     6721 ttctctgatt ttgattcgga ttatggtagc agtactgatg gctatgcgac gcagaatttt
     6781 aaattaggct actatcagcc gaattataat atctcaattt caggtaaaaa attccaaacc
     6841 ttcgatgagt tggatatcgg gccttatcgc gttctgccac aaattgattt taactattat
     6901 aaaaacgatc taattaaagg cggagatttc aaattctttg cccaagcagc ccgttttgaa
     6961 aatgatagta aattaatgcc aaaagcgtgg cgtttccacg ctgagccaac actgaatttc
     7021 ccattagcga accgctatgg tagcttaaat ttagaaacca agctctatgc aacctactat
     7081 caacaaacga aaggtagtga gagtacggaa gaaattaaga aaagtgtaag tcgtgtactg
     7141 ccacagatta agctcgattt taaaaccgtg ttggaatccg ataaacagct tttctctggc
     7201 tatactcaaa cgcttgagcc tcgggtgcaa tatatttatc gcccatataa ggatcaaagc
     7261 gatattggct cgaaagcaca tcgaagtgtg agcttaggct atgactctgc attattgcaa
     7321 aacgactatt tctcactgtt taatgacaga cgttatagcg gtttagatcg tatttcgtca
     7381 gcaaatttag tcactgcagg tggcacaacc cgtttcttta aagaggcaac cggtgaagag
     7441 gtgtttaatt tcagcttagg acaaacttat tatataagcc cgtctaaaat tgatgatacc
     7501 tcagataaca gcactaaagg tcatacgact tcatgggcag cggaatctaa ctggaaattc
     7561 cataagaatt ggaattggca tggtagctat caatatgata ctcgtttaaa ccaaacggcg
     7621 ttagcgaata tgtcattgca atacaaacca cagtcagaca aattgattca gcttaattac
     7681 cgctatgcaa gtaaagatta catcaatcaa aacttgaaca cgaataagta tgggcaatcc
     7741 attaaacaag tgggcggtgt gctaggttgg gaattaaccg ataaagtgtc ggtaatgacc
     7801 agttattacc acgaccttgc attgaaaaaa ccggtggaag ggcaaatttc gcttaactac
     7861 aacacttgct gttgggcggc aaatgtgtat gtggctcgcc gcttagtttc aacgccggta
     7921 ggttcatctg atacgatcaa tgatttctac tatgacaata aattcggcat taactttgag
     7981 ctacgctttg gcacaaacta cagcaatggt gtaacccgta tgctaaaacg aggtattatt
     8041 ccttacaccg agccgtatgg cattaattaa caaagtaaaa acaaataagt aaaaatacaa
     8101 atcggggcga aaaatatttg ccccgatttt tttatatttg gctgataagc ggttaaattc
     8161 tgttggaatt ttgcaaatct tccgctaaat tcaaccgctt gccatcgaaa cttaacctgt
     8221 atttcgcata cctgcggcaa tacctgtgat ggtgatcatc aatgcttgct ctagtacagg
     8281 atcagcattt tcaccttgtt tgcgaatcct atctaacaat tctacctgaa gtagattgag
     8341 cggatcggta taaatattgc gtagtgcaat cgattctgcg atccaaggta aatcggccat
     8401 taattgtcca tcgtgagcca gtgcaagtac ggttttaaga tcagcctgta gttgcgtacg
     8461 caacatattg cctaaacggt gtagttttgg ctcgactagg cgttggtcgt aatattccgc
     8521 cagccaaata tcagctttac taaataccat ttccagcatt ccgatacggg tcgagaaaaa
     8581 cggccattcg ttacacattt cttttagtaa ggtttcatta ccttcatcaa tcaactgttg
     8641 caatgcttgc cctgcaccta accaagcagg tagcattaag cggttttgca tccaagcgaa
     8701 aatccaagga attgcacgca aactatccac tccgcctttt ggattacgtt ttgcagggcg
     8761 tgagccaagc ggcagacggg aaagttcttg ctctggtgta gcagagcgga aatacggtac
     8821 gaagtctagc tcgccacgca ccatatcacg gtaaatttgg taagaaatat cggaggcttt
     8881 tgctagcaca tctcgccatt gctgctttgg ctccggtggt gggaaaatat tcgcttctaa
     8941 aatcgcactg gcatagagtt ctaaactttc aactgccacg gcaggtaagc ctaatttaaa
     9001 gcggatcatt tctccttgtt cggtcactcg taagccattt ttgagtgagc gaggtggctg
     9061 agaaagtaag gctgcgtgag ccggtgcgcc accacgcccg atagtaccac cacgaccgtg
     9121 gaataaggtt aattcaatat tatatttttc acataaatta accagagctt cttgcgcccg
     9181 atattgcgcc cagccggcag caagcattcc ggcatctttg gcggaatcag agtagccgat
     9241 cataatcatt tggtaattgt tgatgacgcc acgataccag ccgatattaa ataaatcggt
     9301 catcactttt tcactatgat ctaaatcgcc tagcgtttca aataatgggg caaccggaat
     9361 agtaaatttg caccccgcct ctttgagtaa aaggtgaacc gagagtacat cagaggcctc
     9421 tcttgccatt gaaatgacat aggctgaaat gacaccttca ggttgctcgg caacaatttt
     9481 acaagtgtct aacacttctt tagtttcagg gcttggagtc cagttggttg gaatcaatgg
     9541 gcggcgagaa ctgagttcac gcactaagaa tgcctgttta tcatcttccg tccagtgagc
     9601 ataatcgcct aagccgatat agcgggtaat ttctgcaatc gccatttcgt ggcgggtact
     9661 ttcttggcga atatctaagc gtgataaacc taaaccaaaa cagtttatac gacgtaagca
     9721 atctagtaat gcaccatttg caataattcg cataccacag gcttgtaatg actcatagca
     9781 atcaaaaagc ggttcccaca attgctgatc tgaagttaaa atgtcacttt catcaatagt
     9841 tgaaatttta ccttccaata attccgcata gtaaatttcg gtattaatta atttctggcg
     9901 taatactttt agtaatacgc gatatggctc taaatggttg ccatatttag cacgaaatgc
     9961 aggggtacac tgtgtaatcg ataattcttc agcaagattt ttaatatctt gtaagaacaa
    10021 ttccgtggct ttccaacggt tcattcttaa tacacggcga gttgtttctg ccgtgacgaa
    10081 cgggttaccg tcacggtctc cgcccatcca agaagaaaaa cggacagggg ctaaatttac
    10141 cggatattgc acaccaaagt gtttttctaa atagaagtta agctgacggc aaaattccgg
    10201 cacggctttc cataaactat tttcaatgac tgccataccg cctttggctt catcaacagg
    10261 ggttgggcgt tgggttctga tttcattagt atgccaagca agggcaatca gttgcattaa
    10321 acggcgcttg attttatagc tttctgcctc agttaaatca tcatgttcca acaaattcaa
    10381 acatttattg atttcaacgt gtttatgccc cagcgaacgg cgggttactt ccgttgggtg
    10441 agctgttagc actaaatcaa tcattaggct ttccacggtt ttaatcactt tttcaacggg
    10501 gatattttgt gattttagac gaaggaacag agagtctaat gagcgactac caagtgattc
    10561 atcaatatga tggcgagaaa cagtttgatg ttgttcagca atatttgtta gatttagaaa
    10621 atggctaaat gcacgtgcaa cgggtaagac atcatcgtta gaaatattgg ctaatttatc
    10681 taatagctgt tcacgggcgt tttcatcgcc ggcacgagaa ttgcgagata acacacgaat
    10741 gctttcgatg agttctagaa tgtaatttcc ttgcgcatca cgaatcgttt ctcccaaaaa
    10801 ttcacctaac atatggatat tatgctgaat tgttgaatat tg
//
LOCUS       DANLUT010000085        10545 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLUT010000085 DANLUT010000000
VERSION     DANLUT010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10545
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            123..1370
                     /gene="icd"
                     /locus_tag="PXB38_001598"
     CDS             123..1370
                     /gene="icd"
                     /locus_tag="PXB38_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL5353906.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            1390..3996
                     /gene="acnB"
                     /locus_tag="PXB38_001599"
     CDS             1390..3996
                     /gene="acnB"
                     /locus_tag="PXB38_001599"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL5353907.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERAEQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYASKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQDLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            4132..6489
                     /locus_tag="PXB38_001600"
     CDS             4132..6489
                     /locus_tag="PXB38_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL5353908.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSCGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQLADYVLGKADNLPKTAEWASQICGIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETVIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSSKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            6644..8155
                     /locus_tag="PXB38_001601"
     CDS             6644..8155
                     /locus_tag="PXB38_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HDL5353909.1"
                     /translation="MTTLFQQFSPTVIKQQWFSNVRGDVLSGLVVALALIPEAIAFSI
                     IAGVDPQIGLYASFCIAVIISFVGGRPAMISAATGAMALVLAGLVRDHGLQYMLAATL
                     LTGVLQIIAGWLKLGSLMRFVARDVVIGFVNALAILIFMAQLPELQNTTWHTYALVVA
                     GLAIIYLFPYVPVIGKIIPSPLVTIIALTLFTLWQGIDVRTVGDMGQLPDTLPVFLLP
                     DIPLNLDTLWIILPYSFSLAAVGLLESLMTATIVDEMTETDSDKNRECKGQGIANIIS
                     GLFGGMAGCAMIGQSVINVKSGGRTRLSTFLAGFLLLIFVVFLSDILKVIPMAALVAV
                     MIMVSIGTFNWQSLEELKTHPIGFNVVMLVTVAIVVYTHNLALGVFSGVLLSALFFAN
                     KIGRYMAVKTSAIEKEELRYDVIGQVFFASSDDFIAQFDFTRSELKKVHIDLTHAHFW
                     DVTAVSALDKVVLKYRKSDVEVEIIGLNEASKTLVDRFGVHDKSEDVDIILNH"
     gene            8262..8654
                     /locus_tag="PXB38_001602"
     CDS             8262..8654
                     /locus_tag="PXB38_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL5353910.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            8654..9742
                     /gene="rlmM"
                     /locus_tag="PXB38_001603"
     CDS             8654..9742
                     /gene="rlmM"
                     /locus_tag="PXB38_001603"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL5353911.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            9810..10283
                     /locus_tag="PXB38_001604"
     CDS             9810..10283
                     /locus_tag="PXB38_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353912.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            10273..>10545
                     /locus_tag="PXB38_001605"
     CDS             10273..>10545
                     /locus_tag="PXB38_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353913.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTS"
BASE COUNT         3037 a         2065 c         2459 g         2984 t
ORIGIN      
        1 ctctcagccc attttgcttt atttacattt agaaatttac tgtttatagt taatccattg
       61 ttggctgatt gtcaacattc atttttcgtc actacttttt cgtcattacg ggggtaaaat
      121 caatgcaaac acaagtccaa attccacaag gcgaaactat tcaactgaac caagacggtt
      181 ctttacaagt tccggataat ccgattattc catttattga aggtgacggc atcggtgttg
      241 atgttactcc tgcaatgaaa gcagtgctag atgcggcggt agaaaaagcc tatcaaggca
      301 agcgaaaaat tgcttggatg gaaatttacg caggcgaaaa ggcgaataaa ttatatggcg
      361 agaacacttg gttgccggat gaaaccttag agcttatccg ccaatatcac gtggcgatta
      421 aaggtccttt aatgacaccg gtgggtggcg gtattcgttc tttaaatgtg gcgatgcgtc
      481 aaggattaga tttatacaac tgcttacgcc caattcgtta ttatgacggt acgccaagcc
      541 cggttaaaca ccctgagctg gtggatatgg tgattttccg tgaaaactcg gaagatattt
      601 atgccggtgt agaatgggtt gccggttcgc ctgaagccaa taaagtgatc gaatttttac
      661 aacaagagat gggcgtgaaa aaaatccgct ttaccgaaga ttgcggtatc ggaattaagc
      721 cggtttctaa gcaaggcaca caacgcttgg tgcgtgctgc attgcaatat gtaattgata
      781 acaaccgtaa atcgctcacg cttgtgcata aaggtaacat tatgaaattt accgaaggag
      841 catttaaaga gtggggctac caagttgcgg aagaatttgg ggcaaaatta attgataaag
      901 gcccttggat gagcttgact aatccgaaaa ccggtgagga aatcattata aaagacagca
      961 ttgccgatgc ctttttacaa gaaatcttgt tacacccaac cgaatatgat gtgattgcta
     1021 cactgaacct aaacggcgac tatatttctg atgctttagc cgcacaagta ggcggaatcg
     1081 gtatttcacc gggagcgaat attgggtttg aagcggctat ttttgaagcc acacacggca
     1141 cagcccctaa aattgcaggg caaaataaag gcaatcctgg gtcattaatt ttaagtgggg
     1201 aaatgatgtt acgccattta ggttgggttg aagcggctga tttagtggta aaagcggtgt
     1261 ctaaaaccat tgccaataaa actgtcacct ttgattttgc ggaaatgctg gagggggtaa
     1321 ctctacgctc aacctcagaa tttgcacaag acattattgc caatatgtaa agttggagag
     1381 ggaatgatga tggaaaattt tatagaaaat tatcaacaac aggttgatga acgtgcggca
     1441 ctgggtgttg tgcctcagcc actttctgcg gaacaaacgg ctcaactggt tgaattattg
     1501 aaaaacccac cggctgaaca agcggtcttt ttattggatc tttttaccaa tcgtattccg
     1561 gcaggtgttg atgaagccgc ttatgttaaa gccgcctttt tagccgatat taccaaaggg
     1621 gttgccacat cgccgctcat ttcgcctgct cacgcagtga aattactcgg cacaatgcaa
     1681 ggtggttata acattgaaac cttattgtct gcgttggata accctgagct tgcaccgatt
     1741 gcggtagaag ccttatctaa aacattattg atgtttgata atttccacga tgtaaaagaa
     1801 cgggcagagc agggtaatcc gtttgcacaa caagtattgg aatcttgggc gaatgccgat
     1861 tggtttacct ctcgcccgaa acttgccgaa aaattaacgg taacggtatt taaagtcaca
     1921 ggcgaaacca ataccgatga tctttccccg gctcaagacg cttggtctcg ccctgatatt
     1981 ccacttcacg cattagcaat gctgaaaaat gaacgtgacg gtattttccc cgatgaaaac
     2041 ggtcataccg gcccgattaa gcaactggaa gcattaaaag aaaaaggttt cccgttagcc
     2101 tatgtcggtg atgtagtcgg caccggctct tctcgtaaat ccgcaaccaa ctccgtgctt
     2161 tggtttatgg gggaagatat tccttacatt ccaaacaaac gtgccggtgg ggtggtgtta
     2221 ggcggtaaaa ttgccccgat tttctttaac acattagaag atgccggttc tttaccgatc
     2281 gaagtggatg taaccaacct gaatatgggc gatgtaatcg acatttaccc ttatgcaagc
     2341 aaaatttgca aacacaactc cgatgaagtc ttagccgaat ttgagctaaa aaccgaagta
     2401 ttgcttgatg aagtgcgtgc aggcgggcga attcctctga ttatcggacg tggtttgacc
     2461 cataaagcca gagtagcact tggcttgcct gaaagtgatg tatttattaa accgcagtcg
     2521 gtttcagaga gtaacaaagg ctacaccctt gctcaaaaaa tggtagggcg agcttgtggc
     2581 gtagaaggcg ttcgaccggg gcaatattgc gagcctcgaa tgacgtctgt cggttcacaa
     2641 gataccacag gaccaatgac aagagatgag ctgaaagatt tagcctgttt aggcttctcg
     2701 gcagatcttg tgatgcaatc gttctgccat actgccgctt acccgaaacc ggtggacgta
     2761 attacccacc acactttgcc tgattttatt atgaaccgtg gcggtgtgtc acttcgcccg
     2821 ggtgatggcg tgattcactc ttggctaaac cgtatgttat tgccggatac tgtcggtaca
     2881 ggcggcgatt cccacacccg tttcccaatc gggatttcat tccctgccgg ttcgggctta
     2941 gttgcctttg ctgcggcaac aggggtgatg ccgttagata tgccggaatc ggtcttggtg
     3001 cgtttttccg gcacaatgca accgggcatt accttacggg atctggttca cgctattccg
     3061 tattatgcca ttcagcaaga cttgctgacg gtggagaaaa aaggtaagaa aaatattttc
     3121 tccggtcgaa ttttagaaat tgaagggttg gaagatctga aaatcgaaca agccttcgag
     3181 ctttctgatg cttctgctga acgctctgct gcagcctgta ccatcaagct caacaaagag
     3241 ccgattatcg agtatctgaa ttctaatatt acgcttttaa aatggatgat tgcggaaggc
     3301 tatgacgata aacgcacgct agaacgccgt atcgccaata tgcaagcgtg gttggataat
     3361 ccggagcttt tagaggcaga cgaaaatgcg gagtatgccg cagtgattga gatcaactta
     3421 gatgaaatca aagagccgat tgtgtgcgta ccgaatgacc ctgacgatgc tcgcctgctt
     3481 tctcaagtac agggcgataa aattgatgaa gtctttattg gttcttgtat gactaatatc
     3541 gggcatttcc gtgcggcagg taaactgtta agccaagcac agggcgaatt gccgactaaa
     3601 ttatggattg ctccgccgac taaaatggac gcaggcttgc tgaccgaaga gggctattac
     3661 agcatttacg gcaaaagcgg agcaagggta gagatgccgg gctgttctct ctgtatgggt
     3721 aaccaagccc gagtggcaaa taatgctaat gtggtttcta cctctacccg aaacttcccg
     3781 aaccgtttag ggcaaggggc aaatgtgtat ttagcctcag cagaattagc cgcagtttct
     3841 gcgttattgg gtaaattgcc gacaccgcaa gagtacctag actatatgaa taacttgcag
     3901 aaagataagg acgatattta ccgctatatg aactttgacc aaatcaatag ttatgtgaaa
     3961 aaagcggaca atgtaatcgt tcaagttgcc gtttaacttc cttgaagccc acctttttag
     4021 gtgggttttg ttttgcaaat ttttggctaa aaacaaccgc ttgtggttgc aacttttggc
     4081 ttaatccagt aaattcctct caattttata acagaaaagg cattaattta aatgaacaca
     4141 gcattagaaa aaggcaagtt tgtctttttg gataaaccga aaaataccat taccaccgcc
     4201 gcccactggg gtgcattaaa tgtaacggtg gaaaacggaa aagtggtgaa atcagagggc
     4261 agtttagcga aaaatcacca aaacgaattg caagatgtgg tggcggatca gctctatagc
     4321 ccggttcggg tgaaatatcc gatggtgcgg aaaggctact tggaagggaa taaagacacc
     4381 actttgcgag ggcgagataa gtgggtgaga atctcttggg acaaagcctt tgagctggtt
     4441 tccggcgaaa tccaacgggt aagagagcaa tatggcagcg aatccatttt cggcggctct
     4501 tacggctggt atagctgtgg ttcactgcac gcatctcgaa cgcttttgca acgttattta
     4561 aacgtcacag gcggctttac caatactaaa ggcgattatt ccaccggtgc ggtgcaagtg
     4621 attatgcctt atgtattagg caatattgag gtgtatgctc aacaaaccag ttggcacacg
     4681 attgtagaaa gcacagaatt attggtaatt tggtcgtcta atccactgaa tacacttcgc
     4741 attgcgtgga cctctgccga accggagggg attgattatc tcgccaaatt aaaagcaagc
     4801 ggtaaacgga ttatttgtat cgacccggtg aaaagcgaga cctgtcagtt tttagaggca
     4861 gagtggttgc ctattaatac cggcacggat gttgcactga ttttagggat cgcccacacc
     4921 cttattactg aaaacaagca cgatcacgac ttcttaacta aatatactgt tggtttcgag
     4981 caacttgctg attatgtgtt aggaaaagca gataatttac ctaaaacagc agagtgggcg
     5041 agccaaattt gtggcattcc ggaggaggtg attaaaacct tagcaaatga ttttgttact
     5101 caccgcacaa tgttgatgtc cggctggggc ttgcaacgcc tgcaacacgg ggagcaaagc
     5161 cactgggcgt tagtgactct tgccgctatg ctcgggcaaa ttggcttgcc gggcggcggt
     5221 ttcggcttaa attatcgtta ttctaccaat gggctaaatg ttaattccgg tgttcgttta
     5281 ggggcaatca atgcaggtaa acctaacccc gatatgccgt ttttcccggt gtctcgaatt
     5341 gccgatgcgt tgctcaaacc gaatcagcct tatgattaca acgggcaaac attacattac
     5401 ccgaacatca aattagtcta ttgggcgggg ggtaatccgt ttgctcacca cccggatacc
     5461 aactatttag tgaaagcgtg gcaacagccg gaaacggtga tcgtcaatga atgttactgg
     5521 acaccgaccg ctcgaatggc agatattgta ttgcccgcaa ccaccagcta cgagcgaaac
     5581 gatctcaccg ttgccggtga ttatgtagca aaacatatta tcccgatgaa acaggtggtt
     5641 gaaccgcaat ttgaggcgaa gaatgattac gatatttttg ccgaattagc gaaacgagcc
     5701 ggtaaagaac aagcatttac cgaaggcaaa agcgaaatgg aatggcttaa ggaattttac
     5761 caagttgcct ttgaggcggg ggaaaaagct aatacgccat tgctggattt cgaggcattt
     5821 tgggcggaaa ataaagtgtt gagctttgag gcagaacatc aaaataatac tttcgttcgc
     5881 tatcaagatt atcgtactga tccgattaaa cacaaattgg caacgccatc aggcaaaatt
     5941 gagattttct ccgaaaccat tgccaagatg aattatgaag attgtaaagg acacccgact
     6001 tggtttgaac atcacgaata ttcaagcaaa accaacgaag ccgagccgtt ggcattagtt
     6061 acaccgcata ttaaataccg tttacacagc cagcttgctt actcctcatt acgtcaatat
     6121 tacgaggtaa acggcagaga accaatgcta attcacacaa aagatgccgc tgacagaggc
     6181 attacaagcg gtgatattgt gcgaattttt aacaagcgag ggcaggtgtt ggcaggagca
     6241 gtggtgactg atggcatcat tcaaggcaca gtagcgttat acgaaggtgg ttggtatgac
     6301 ccgcaagatt taggcaaaac agatactcca ctatgcaaaa acggcaaccc gaatgtgcta
     6361 acccgtaatg agggttcatc aaaactcggg cagggcaatg caccgaacac taccacggtt
     6421 caagtggaaa aatatgtggg agatgcacct gaagtgacgg tgtttaaagc cccttttttt
     6481 agtgaatagc aattaatcca agcggtcatt tttctactat tttttgcaaa aaaagagcga
     6541 aagaagaccg cttgtttatt tgacgacttt tcactaattt gctactctct cgcctcattt
     6601 ttagccgact ttgctcggct tttcttttta tttaagggta ataatgacaa ctttatttca
     6661 gcaattttcg cctacggtaa ttaaacaaca atggttttca aatgtacgag gtgatgttct
     6721 ctctggttta gtggtggctt tggcgttaat tccagaagcc atagcatttt caattattgc
     6781 aggggttgat ccacaaattg gtttatatgc ctcattttgt attgcagtaa ttatcagttt
     6841 tgtgggcggc agaccggcga tgatttctgc agcaaccggt gcaatggctc tggtattagc
     6901 aggcttagtg agggatcacg gtttacaata tatgctagcg gccaccttat taacaggcgt
     6961 gttgcaaatt attgccggtt ggttaaaact cggctcgctt atgcggtttg tggcacgaga
     7021 cgtagtgatt gggtttgtta atgcacttgc cattttaatt tttatggcac aactacctga
     7081 gttacaaaat acaacttggc atacttatgc actggtggta gcagggcttg ctatcattta
     7141 tctttttcct tatgtaccgg tgattggaaa aatcattccc tcaccattag tgaccattat
     7201 tgctttaaca cttttcacat tatggcaagg cattgatgtt cgtaccgttg gggatatggg
     7261 gcaattaccc gataccttac cggtgttttt attacccgat attccgctta atttagacac
     7321 cttatggatt attttgcctt attctttcag cttggccgca gtagggttat tggaatcttt
     7381 aatgacggca acgattgttg atgaaatgac agagacagac agcgataaaa accgtgaatg
     7441 taaagggcag ggcattgcca atattattag tggcttattt ggtggtatgg caggttgtgc
     7501 gatgattggg cagtcggtca ttaatgttaa atccggtgga cgtacaagac tatctacctt
     7561 tctcgccggt tttttgttac tgatttttgt ggtatttttg agcgatattc tgaaagtgat
     7621 tccgatggct gcattagttg cggtgatgat tatggtctct atcggcacct ttaattggca
     7681 atccttagaa gagctaaaaa cgcacccaat cggctttaat gtagtgatgt tagtcaccgt
     7741 tgcgattgtg gtttatacac ataacttagc ccttggcgta ttttccggcg tattactctc
     7801 ggcattattc tttgcgaata aaattggacg ttatatggcg gttaaaacaa gtgctataga
     7861 gaaagaggaa ttgcgttatg atgttatcgg gcaagtattt tttgcctcat ctgatgattt
     7921 tatcgcacaa tttgatttta cccgttcaga actgaaaaaa gtccacattg atttaaccca
     7981 cgctcacttt tgggacgtaa cggcagtttc agcgttagat aaagttgtgt tgaaatatcg
     8041 aaaaagtgat gttgaggtag aaattatcgg attaaatgag gccagcaaaa ccttagtaga
     8101 tagatttggg gttcacgata aatcggaaga tgtggatatt atcttgaacc attaagcata
     8161 caagcggtga ttttttgtaa tttttttgca aaatttcacc gcttgttggt ttcgataata
     8221 tgatatagta agccatctaa catcatacct atcttcaact tatgaaaaac aaatttgtag
     8281 caattgccgc attcagcggc ttatttactg tggcatttgg ggcgatagcc agccacgcat
     8341 tatcggctca attatcgcct aaagccttag gctggattga gacggggatt aaatatcaaa
     8401 tgtttcacac ccttgccatt ttagctttag gtttattcca aattgcaaat tttgggcaaa
     8461 atccacccgt ttgtagagcc aaagccttta acatcatcgg aagcaattgg gcgttaggca
     8521 ttctgctttt tagtggcaac ctgtacttac tggcgttaaa tgtgccgact attcattggc
     8581 ttacgcctat tggtggtctc tgctttatgc ttggttggat tgcgttaatt tatatcagtg
     8641 tgagaaaagc ctaatgttca ataaattagc cttatattgc cgagcagggt ttgaaaaaga
     8701 ggtagcaggc gaaatcacgg ataaagctgc acaacagggc atttttggct ttgccaacct
     8761 taaagaaaat agtggctatg tgatttttga gtgctatcaa gcaggggaag cagatcgatt
     8821 agcccaagcg ttaaagtttg aacagcttat ttttgttcgc caaatgttgg ttgttgggga
     8881 tttgttgcaa aatctgtctg aaaatgatcg aatttcgccg attttagccc aatatgccga
     8941 acttaatcct cgccaaagtt ctgatgtatt tgtcgaaaca ccggatacca acgaagcgaa
     9001 agaattatta actttctgtc gtaaatttac tgtgccatta cggtcggcat tgaaaaaaca
     9061 aggttggttg gggaaatcgg aaaatatgca gggtagtgtg agcttgcata ttttatttac
     9121 tcgtccggga gcttgctatg tgggctatgc gtacaaccat aataaatcgc cgttttttat
     9181 ggggattccc cgtttaaaat tcccggctga ggcacctagt cgctcaacgc ttaaattaga
     9241 agaggcgatt ttaactttta ttccgcaagc agaggagaaa aaacgcttta atgatacgat
     9301 ggtaggggtc gatcttgggg cttgtccggg tggttggact tatcaattag tcaaacgtgg
     9361 tgtttttgtc tatgcagtcg atcacggcaa aatggcagca agtttacacg aaaccggaag
     9421 aattgagcat tgccctgaag atgggtttaa attccaaccg cctaagcgta aacaaatcga
     9481 ttggctggtt tgtgatatgg tagagcagcc gattcgtatc tcgaaactca ttgcaaaatg
     9541 gctgactaac ggttggtgtc gagaaacgat tttcaaccta aaactgccga tgaaaaaacg
     9601 ttatcaagaa gtgcaactat gcctcaattt cttggaagaa gagctgacga aacacgggtt
     9661 ttggttcaaa atgcaagcta aacacctcta ccacgaccgt gaggaaatta cggtacatat
     9721 tgcggtgatg gggcaaaaat agcataaaat gaataagttg tttttctaag taatccagta
     9781 gataatgaca acttattccg taaggagaga tgatgaaaaa tttaccctta tctatggctg
     9841 acacgcttgc agtgatttat ccggcatttg atttcgcagc tgatgataaa cctgcaacag
     9901 agcagcaaat ctcattgtta aattttcgta ttacaatggc aaatcaatta ttaattgcct
     9961 gtattgaaac tatcgaaaaa aatccaaact tttgggctga aattgattta aacgatttca
    10021 aaaaatacct aaatcaaaat aaggtggtga ttttcgatac ccaacagtat tttactgatg
    10081 gctcaaggac aatggctata ttggataata tgaagtccaa tattcgcaaa attgaacagc
    10141 aactctctca agcaaccgca tttaattttg acttagagcg aatgaaagag cggttaaatg
    10201 atacttttca cgaagtgcct aaagatataa cgaatgttaa tgaatttaga aactggttga
    10261 aaggtgttgc aaatgggcat taaagtttta tttggtacaa aaatttcagc cgaattgcaa
    10321 tatttgcctg aaaaagatct agtcaaaatc ctgcagttta aacaacacgt tgaaatttat
    10381 ggattggaaa atctagctgg tcgaaataaa agttctgatg atgtgccaac gaatgatcct
    10441 tattgggcag agaaggtggc taaagcacaa aaatattctt tatggcatta tcatatcggc
    10501 attccagaat atgataccag tcaaggattt ggtaattata cttct
//
LOCUS       DANLUT010000086        10478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLUT010000086 DANLUT010000000
VERSION     DANLUT010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            54..2621
                     /gene="clpB"
                     /locus_tag="PXB38_001606"
     CDS             54..2621
                     /gene="clpB"
                     /locus_tag="PXB38_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL5353914.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALVKQDGG
                     SVAPLFTALNINVQTLISELQAILDRLPQVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLASIEDNGDLGKLWKKFGLSKEKLTQAISQIRGGETVNNQNAEETRQALQ
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIASAKYRGEFEERLKAVLNELAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVTNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            2835..3977
                     /locus_tag="PXB38_001607"
     CDS             2835..3977
                     /locus_tag="PXB38_001607"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL5353915.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     DKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNAIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4034..5422)
                     /locus_tag="PXB38_001608"
                     /pseudo
     CDS             complement(4034..5422)
                     /locus_tag="PXB38_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
     gene            complement(5582..6481)
                     /gene="cdd"
                     /locus_tag="PXB38_001609"
     CDS             complement(5582..6481)
                     /gene="cdd"
                     /locus_tag="PXB38_001609"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL5353916.1"
                     /translation="MFRTDITERFEQLKAEKNCAVTQAIIEQLIKQDFHGQPSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(6495..7397)
                     /locus_tag="PXB38_001610"
     CDS             complement(6495..7397)
                     /locus_tag="PXB38_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5353917.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGVGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAIFSIILLNES
                     VHSYHIISAILITAGILICSYKKH"
     gene            complement(7394..7750)
                     /gene="folB"
                     /locus_tag="PXB38_001611"
     CDS             complement(7394..7750)
                     /gene="folB"
                     /locus_tag="PXB38_001611"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL5353918.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            7820..8425
                     /gene="plsY"
                     /locus_tag="PXB38_001612"
     CDS             7820..8425
                     /gene="plsY"
                     /locus_tag="PXB38_001612"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL5353919.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(8499..10406)
                     /gene="parE"
                     /locus_tag="PXB38_001613"
     CDS             complement(8499..10406)
                     /gene="parE"
                     /locus_tag="PXB38_001613"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL5353920.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMDPSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
BASE COUNT         3270 a         2303 c         2094 g         2811 t
ORIGIN      
        1 aagagatgta aataaaaatt tacactttct aaactcattg taaggagaaa gaaatgaatt
       61 ttgaaaaaat gaccacaaaa ctgcaagaag ccttggcaga atcccaatcg cttgcagttg
      121 gaaaagataa tccttatatc gaacctgccc atttactgta tgcgttagta aaacaagatg
      181 gtggatctgt tgcccctctc tttaccgcat taaatatcaa tgtgcaaacc ttaattagtg
      241 aattgcaagc tattttagac cgcttgccgc aagttcaagg cggtaataca caggtttcac
      301 agcaattagt gagattgtta aatcagtcag acaagctcgc acaacaattt ggcgacagtt
      361 ttatttcctc tgaattgttt gtgttggcaa gcattgagga taatggcgat ttaggtaaat
      421 tatggaaaaa atttggctta agcaaagaaa aactgacaca agctatcagc caaattcgag
      481 gaggagaaac cgtgaataat caaaacgcag aagaaaccag acaagcatta caaaaatata
      541 cgattgatct gaccgagcgt gccaaagctg gcaagctaga tccggtaatc ggtcgtgatg
      601 aagaaatccg ccgtgcggta caagttttac aacgccgcac taaaaataac ccagtattaa
      661 tcggtgaacc gggggtcggt aaaactgcga tcgtagaagg cttggcacag cgtattgtaa
      721 acggcgaagt gccggaaggc ttgaaaaata agcgtgtact ttcgctggat atgggagcat
      781 taattgccag tgcgaaatat cgtggtgaat ttgaagagcg tttaaaagcg gttttaaacg
      841 aactggcgaa agaagaaggg caagttatcc tctttattga tgaaattcac acgatggttg
      901 gagcaggcaa aacagacgga gcaatggacg ccggcaactt attaaaacca agccttgccc
      961 gtggtgaatt gcactgtgtg ggggctacaa cccttgatga atatcgccaa tacattgaaa
     1021 aagatgcagc ccttgaacgc cgtttccaaa aagtattggt ggacgaacca acggttgaag
     1081 atacgattgc gattttacgt ggtttgaaag agcgttatga aatccatcat cacgttcaaa
     1141 ttacagaccc tgccatcgtg gcggcggcaa cgctttcgca ccgttatgtg tctgaccgtc
     1201 aattgccgga taaagcgatt gacttgattg atgaagccgc ttcaagcctg cgtatggaga
     1261 ttgattctaa acctgagccg ttggataaat tagaacgccg cattatccaa ctcaaattgg
     1321 aacgccaagc gttacaaaaa gaggaagatg aagcgagccg tcagcgttta gccaaattag
     1381 acgaagaaat ggcagcgaaa gagcgtgaat attccgagct ggaagaaatc tggaaagcgg
     1441 aaaaatccgc cttacttggt acacagcata ttaaatcgga gttggaaaat gcccgaattg
     1501 cgatggatca ggctcgccgt gaaaacgatt tcgagaagat gtcggaattg caatatggcg
     1561 tgattccaaa cttggaaaaa cagttacaag cggtcgaaaa tggcgaaaaa aatgcagatg
     1621 ctcagctcct ccgtactaaa gtcaccgaag aggaaattgc ggaagtgctt tcaaaagcaa
     1681 cgggcattcc tgttgcaaaa atgatggaag gcgagaagga aaaactcctt cgtatggaag
     1741 aagtattaca cgctcgggtt atcgggcaaa atgaagccgt tgatgcggtg acaaatgcga
     1801 ttcgccgtag ccgtgccgga ctttccgatc cgaataaacc gattggttca ttcctattct
     1861 taggaccgac cggcgtgggt aaaaccgagt taagcaaaac cttagctaat ttcttgtttg
     1921 acgatcctga tgctatggtg cgaattgata tgtctgaatt tatggaaaaa cacagcgtat
     1981 cccgcttagt gggcgcacct ccgggctatg tcggctacga agaaggcggc tatttgaccg
     2041 aagcggttcg ccgccatcca tattcggtag tgttacttga tgaagtggaa aaagctcacc
     2101 ctgatgtgtt taacatttta ttgcaagtgt tagatgacgg gcgtttaacc gacgggcaag
     2161 gcagaacagt cgatttccgc aatacggtag tgattatgac ctcaaactta ggctcgcatt
     2221 taattcgaga aaatgcgtat aaaggctatg atgtggttaa agaaatggtg atggaagtcg
     2281 tcggacagca cttccgccct gaatttatca accgtattga tgaaacggtg atgttccact
     2341 cacttggtca agagcatatc cgttcgattg cgaagattca gctacaacgc ttaatccaac
     2401 gcttggcaga acgaggctat gaggtgacag taaccgatgc agcattagat catatcggca
     2461 aggctggttt cgatccgctg ttcggagcaa gaccactgaa acgtgcgatt caacaagagc
     2521 ttgaaaatcc gcttgctcaa cagatcttaa gcggtaaatt attaccgaat aaagccgtta
     2581 cggtggatta ccaaaacggg cagattgttg caacacaata atgtctccga tggtgcgagc
     2641 gtcctcgctc gtaccttaca agcggtggat ttatcgtaaa aatttgcaaa aaattgctcg
     2701 aaaatgaccg cttgcacagt aaaaattttc atattgccct tcattaattt tcataagcta
     2761 atgaagggct ttttattact ctttttgcta tcattaacgg cgtttataac caatacaatt
     2821 acaaggagta atttatgagc caattatttc cggaagcaac aatccgcact caagccccgt
     2881 atcgtaatga tattgtaggc agctttctac gtaccgatgc gttaaaaaaa gccagagaag
     2941 atttcaatca gcaaaaaatc acccgtgacg aattgcgtga agtcacacgc caagaggtca
     3001 aaaaattagt tgagttgcaa aagcaacacg gtgtaaaagc agtctctgac ggtgaattta
     3061 gccggacttg gtggcattta gatttcttag ctgaacttga tggaatggat tggcaagaaa
     3121 ccgaagtctt taacgtgaac tttaccggtc ataaacccaa agggcaaacg gtaaaaatcg
     3181 tgggcgatat tgatttctcc gaaagccacc cttttgtgga cgcttatcgt cttttaaaag
     3241 aagctgccgg cgattaccca accaaattca cgattccggc accgacaatg ttacatatta
     3301 tctgctgtgt gcgtgcggaa gattaccaac cgttaccaca atatcaagac gaacaaaaac
     3361 tgtacgatga tattgctaat gcttatatca aagcaatgca caaattctac gatatggggc
     3421 tacgtaactt acaattagac gacaccagtt ggggacaatt ctgtgccgaa gataaacgga
     3481 aagagtttgc agccagagga tttaatttaa ctgatttagc ggaaaaatat gtcgcattat
     3541 taaaccgtat tgttgatgca aaaccggcgg atatgtcaat tacgatgcac atctgccgtg
     3601 gtaacttccg ttcttcttgg ttctcggaag gcggttatgg accggttgcc gaagtattat
     3661 tcgataaatg ccgtgttgac ggcttcttct tagaatacga taccgaacgt gcaggcactt
     3721 tcgagccact acgccacatt aaagatcaac aagtggtact aggcttaatt acctctaaat
     3781 ttggcgattt agaagataaa aatgcgatca ttgagcgtat taaagaagcg gctcaaattg
     3841 tgccaatcaa tcagctatgc ttatcaccac aatgcggctt tgcctccacc gaagaaggca
     3901 atattttaac cgaagccgca caatgggcga aactaaactt aattaaagaa attgcggaag
     3961 aagtttgggg tagctaatcc tctataatac aaatagccga gtaaatactc ggctatttta
     4021 gtttgtttta acattacaac cagaagagat acccaacagt cgcaatcaca aagatagaga
     4081 taatatttag ccagaaacca actttaatca tctcactttg tttaatttgc cctgtaccaa
     4141 atacaatcgc attcggtggg gtggcaaccg gcaacataaa ggcgcaagat gctcctagac
     4201 caataattaa ggctaatccg accggtggca tatttaatgc ttgtgctata gagatgaaaa
     4261 tcggcactaa caaagccgca ctggctgtgt tagaggtaac ctcagttagg aaaataataa
     4321 atgctgccac aattaaacca attaggtaaa aatgcccccc ttcaattagt gagacgaccc
     4381 catcagccat aattttgctc gcaccagttt gtcctaatac agcacttaac gtcaaaccac
     4441 caccaaatag gaataatacc ccccactcgg tgttttcttg aatctgttgc caatttgcga
     4501 cacgagtaat gcaaataagt gctgcggcaa tcaatgcaag aatggtgtca aagctcgcaa
     4561 ttttgccatt aattcccaga aatgcagaaa taatagggtt aattttatca ccaaaaatcc
     4621 aaccaagcgc aataaagacg aaaatagcca aggtgataat acgagaacga tttaattcaa
     4681 ttttctcaaa tgatcgatca aaactaactg aaaaatttgg tttaaatacg atatatagtg
     4741 ttgcaatcat taatgggaat aaaattagca taattggcaa accatatttt aaccaatcag
     4801 caaaagtcag attcaattga gaagcaacaa tcgcattcgg tgggcttccc acgaaagtac
     4861 ccattccacc aatactggca ctataagcaa ttcctaataa cacgaaaaga taagtattgt
     4921 ggttctgttt ctgatcaagt ttacttaaaa tccccattgc caaaggtaac atcattgcag
     4981 ctgtagctgt attactcatc cacattgaca aaaacgctgt taccgcaaat aaaataactg
     5041 caatcgataa tttaccttta gctaatgcca taattttatt ggcaatcata cgatctagct
     5101 actgaatgtg taatgctgtc gctaaggcaa agcctccaaa aaataagaaa atcgttggat
     5161 cagcaaaagc aacaagagct tcttttgatt taaccagccc cagtgctaca gccaaaatcg
     5221 gaattaataa tgccgtaacc gtaacgtgta atgcttctgt tagccataag acggcaatga
     5281 aaattaacaa tgccaacccc ttattggctt caggcgtaaa aggcaaggta tttaacaaaa
     5341 taataaataa aatagcatct gcaacaaaaa tcaagctatt gcgtgtattt ttactcggtt
     5401 caataagagg agtattttcc ataaaaacct cacaaaatat agataatcag tggtatcact
     5461 atatataaaa aaacgatata ggcaaatata attgttgcaa aagtgtgaag ctcatcaaaa
     5521 aatttaacac taaaaaataa attgcttaaa gatacagcac ctttgcaaaa ataaatcaaa
     5581 attacaccgc ttgtagcgaa aggtattcaa tctctaaccc aaatagtgat tttgccaatg
     5641 cttgagtcat tgcataacta ctgagagagc ctttcgcctc agccagcaca actcgagtaa
     5701 cgggaatatc ggcaagccct aaaaataatc gatagttcaa cgcgctttgc aacggtaaaa
     5761 aagtaggatt aaaagctgca ttctcagtat atttaccaca aacaatacgc tcacctactt
     5821 gcagtgcaac cccactaaat gcgttgctgt aaggggcata agcattattg gcagcaaaaa
     5881 ttgccgcttg ttgtaaatga tcgcccttaa cctcaaattg ttgcggttgt tcatcaaata
     5941 agactttctc aatccctaaa tctttcggtc caaaactatc cggcaaatag ctatggagca
     6001 aattattttg gctatgcggt aaatgtactt ttaagcttgc cgcactgttt aattcattca
     6061 taaattggcg gcaatgccca caaggggtat agttcacaac cacatctgtt atcaaagttt
     6121 cccctgctaa aaatgcgtgc gagattgcac tttgctctgc gtgaacggat tgttgcatac
     6181 attccccgga aaactcttgg tttgccccaa aatagaaatc tccgtttttg ccaatcgcaa
     6241 ccgcccctac attaaaatcg gaaactggtg taaccgcata acaggcagca atggcaatgc
     6301 aatataaagc caactcaaca cgagagcgtt taaatttttc acagagttca tcaaccactt
     6361 cataagaggg ctgcccgtga aaatcttgtt tgataagttg ctcaataata gcctgtgtaa
     6421 ctgcacagtt tttctctgct tttaattgtt caaaacgctc tgtaatgtct gttcgaaaca
     6481 tacggtacct ccgtttaatg ttttttatag ctgcaaatca gtatccctgc cgtaatcagt
     6541 atggcactaa taatatggta agaatgaact gattcattta ataaaataat actgaatatt
     6601 gctgcaaaga gcggcgtaaa attagtcatt accgctcctt tagcagaacc gactattgca
     6661 atgccgaaat tccaaaacgc ataagagaga atagaagggc cgataaccaa atagcctacc
     6721 ccactccatt gtaaagcggt caaatttgct aaattttttg cagattctgc tacatattca
     6781 tagataaaaa atggcgttaa cgttagaact gccagcccca ctaatacggt caaaaacacc
     6841 gtattgctta taccttgtgg acgtagccga atcacacaac aataaaccgc ccagcttata
     6901 gtagaagcaa tcgcccataa atcaccttga ttaattgcca agctgaataa gcgagttagc
     6961 ttcccttgca tcaatagcca cagcactccc agcaaactga ttattgcccc acttagaata
     7021 atcgggctga ttttctcctt aaaaacgagc cgatttaaaa atagcaccaa tacaggcgaa
     7081 atagctaaat agagactcgc attcaatgct gttgtcgttt ttaaaccttc atataaggta
     7141 gccgggaata aaattacccc aagcagacct aatacccaca tcacacctaa acgaggtttt
     7201 aataagtgca ttacccgcca agttgggcga aaaaagagca aaactaaaat taaaaaagcc
     7261 ggcaaccaac gcaaataggt taaggtaata ggctgaactg ccccacttaa cactttgcct
     7321 aatacaaaat tcccacccca aaaaagagta gcaacgatta aactgaaata ccccaatttc
     7381 agtgatgatg agatcattga tgacctcgtt ctacaatcac acctacactg cttgcttggg
     7441 caaccgcttt cggcttatgc agttcaatcc gaatccaaga aagttgatac tctttttgta
     7501 atagttccgc cagttgatag gcaacagttt caactaattt gaaaggttga gattcaacaa
     7561 aatccagcac tttttgcgat acttccgcat aattcaagca atattgtaca tcatcggttt
     7621 ctgccgcttt ggaaaaatcc cacgccatat caatgttaaa aaccaagcgt tgcttaatcg
     7681 tatgctccca attgtaagcc ccaatggaag caaaagcggt tagttctcga ataaaaacct
     7741 tatcactcat ttttcgtcct gttttatttt ctgaatttct gtaaaatata gcacaagata
     7801 aatttaatca ggaaaattta tgaatttaat tccctattta ttgatcttaa ccgcctattt
     7861 gctcggctcg atttccagtg cggtcatttt ttgtaagctg gcaggcttgc ctgacccaag
     7921 agaagtcggc tcacacaatg ccggtgcaac gaacgtacta cgaattggcg gtaaaagtgc
     7981 cgcattaggt gtgcttttat tcgatatttt aaaaggcaca ttaccggtgg cgatggggat
     8041 ttattttgaa ctctctccct cacaactcgg tttcatcgcc ttagcggttt gtcttgggca
     8101 tattttcccg attttcttcc aattccgtgg cggaaaaggc gttgccaccg catttggtgc
     8161 aatctccgca ttaagcttta ttgttgcagg cggtgctatc ggcacttggc tactggtgtt
     8221 tttaatctcc ggctattctt ctttaagtgc cgtcttcact gccttggtcg taccgtttta
     8281 catttggtgg ttcgaaccac aatttacttt ccccgtcgcc ttagtttgtt gcctattggt
     8341 ttaccgccat cacgataata ttcaacgctt atggcgtggg caggaagaca aactgtggga
     8401 taaattcaag aaaaatagag cataaaaata ggcatagtga accgttcgct atgcctattt
     8461 gcaaattatt gcggaaaaat caccgcttgt cttctcgact aaaccgctaa atcagcctca
     8521 tcgcctcgat tttgtagcca ttgtttacga tcttccgctc gttttttacc caataacata
     8581 tccataattt caaaggtatt caattcaccc tcttctgccg tatcatcaaa ggttaattgc
     8641 actaagcggc gagtgcttgg atccatcgtc gtttcacgca actgactcgg attcatttcg
     8701 cctaagcctt taaagcgttg cacatttggc ttgccttttt tcttggcaag gcgagctaaa
     8761 attgcctctt tttccgcctc atctaaagca taatgcacct catctttacc tatatcaata
     8821 cgataaagtg gcggcattgc cacataaacg tgtccgtttt gcaccaattt cgggaaatga
     8881 cgaaggaata acgcacacag caaggtagca atatgcaaac cgtcagaatc cgcatcggca
     8941 agaatacaaa ctttgccata acgcaactct tctaaattat cgctatcagg gtcaattccc
     9001 aaggctaccg caatatcgtg tacttcttgt gaagccaata cttggtctga tgaaacttcc
     9061 caagtgttta aaatcttacc acgcagcggc aaaatggctt gatactcttt atctcgagct
     9121 tgttttgccg aaccgccggc agaatcacct tctaccaaga aaagttcggt acggctgaga
     9181 tcttgagcag tacaatccgc cagtttgccc ggtaaagccg gaccactcac caatttctta
     9241 cgcaccactt ttttcgccgc acgcatacgg ctctgggcgg aactaattgc catttcagca
     9301 attaatttac ctgtctgcac attttggtta agccataaac taaaggcatc tttcaaggtg
     9361 ctatccacat agcttgaggc ttgacgggaa gacaaacgct ctttggtctg ccctgcaaat
     9421 tgtggctctt gaattttcag agaaagcaca taagcacaac ggttccacac atcatcagcg
     9481 gttaatttta cccctttcgg caataaatta tggatttcgc aaaactccac catcgccttt
     9541 aataaaccgt tacgcaagcc attaacgtgc gtgccgcctt gtgcggtcgg aatcaggttc
     9601 acatagcttt ccgctactaa ctcgccccct tccggcaacc aagttaatgc ccagcttacc
     9661 gcctctgttt cagcagtaac atcaccaata aacggtggat tcggcacggt ttcataaccg
     9721 tttaatgcct cgctcaaata atcagataag ccgtcttcgt aataccaact ttcttcggta
     9781 ttgttgattt tatcaataaa attgatggtg agtttcgggc aaagcaccgc tttggctcgt
     9841 aacaaatggc gtaaacgact caccgaaaaa cgagggctat caaaatattt tgggttcggg
     9901 taaaaacgca ctgtcgtgcc ggtctgtttt ttcgggcaag taccaattac cgtcagatct
     9961 tccactttta ccccgttggc aaaggcaatc gaatagactt ctccgccacg tttaatctga
    10021 atttcaaccc gttcggacag ggcatttacc accgaaatcc ccaccccgtg caaaccaccg
    10081 gaaaacgtat agtttttatt ggaaaattta ccgccggcgt gcaatttcgt taagataagc
    10141 tccacccctg aaattttctc ggtggaatga atatcgaccg gcattccccg cccgttatcc
    10201 accacttcca acgaattatc agcatgaaga atcacatcaa ttttatctgc aaagccggac
    10261 aacgcctcat cgacactatt atcaatcacc tcctgcccca aatggtttgg acgtgtggta
    10321 tccgtgtaca ttcccgggcg aagctgcacg ggttcaagat cttttagaac ggtaatttca
    10381 tccgccccat agcgtttttc agacattatt ctttctctta ggctataaaa tgaagctgaa
    10441 ttttaaggaa aattcagctg ttttgcaaaa ttttggtg
//
LOCUS       DANLUT010000087        10402 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLUT010000087 DANLUT010000000
VERSION     DANLUT010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10402
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            35..712
                     /locus_tag="PXB38_001614"
     CDS             35..712
                     /locus_tag="PXB38_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5353921.1"
                     /translation="MGNLKEWFSANDLLERKVNGLPKSPQGINKKARTQNWTKRNKDG
                     VQGGAVEYHYSSLPMSVQEELGFTQTTTIEEPRTFVAAQTADDMERVPFYDVKASAGL
                     GAFNSEVYAPNDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDEALDFEVIGQVV
                     YIGHEMI"
     gene            complement(944..1306)
                     /gene="uxuA"
                     /locus_tag="PXB38_001615"
                     /pseudo
     CDS             complement(944..1306)
                     /gene="uxuA"
                     /locus_tag="PXB38_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199716.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
     gene            complement(1325..2074)
                     /locus_tag="PXB38_001616"
     CDS             complement(1325..2074)
                     /locus_tag="PXB38_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL5353922.1"
                     /translation="MAAEDLRSYKKIGQELKAELLSGAYKVGDKLPPERDLSNYFNVS
                     RTVIREALIMLELENLIEVRKGSGVYVINLPKSNAEETEELPDVGPFELLQARQLLES
                     SIAEFAAIQATRADVLHLKEILERERRTLEHGDEDYVADEDFHKAIAEITQNEVIIRM
                     QKDLWEYRTNSPMWKGLHSHIPDQSYRTLWLKDHENIIAAIQRKDPVLARKMMWQHLE
                     NVKQKLFELSDLDDPNFDGYLFNVSPLAVNF"
     gene            2310..3155
                     /locus_tag="PXB38_001617"
     CDS             2310..3155
                     /locus_tag="PXB38_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5353923.1"
                     /translation="MNVSKNHNFKDKVVVITGAGGVLCAFFAQEIAKTGAKVALLDIN
                     LESAEKYAQAIVQNGGAAKAYKTNVLDLESIQQTRNAINKDFGTCDTLINGAGGNSPK
                     ATTDNEFHEFNLTDSTKSFFELDKSGIEFVFNLNYLGTLLPTQVFAKDMIGKKGASII
                     NVSSMNAYTPLTKIPAYSGAKAAISNFTQWLAVYFSRVGIRCNAIAPGFLVSNQNRGL
                     LFDNEGNPTPRANKILTNTPMGRFGEANELIGGILFLMDENYSSFINGVVLPIDGGFS
                     AYSGV"
     gene            3165..3980
                     /locus_tag="PXB38_001618"
     CDS             3165..3980
                     /locus_tag="PXB38_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDL5353924.1"
                     /translation="MTIFTPKHNFIVCIDSDGCAMDTMNIKHEECFGPSAVKVFDITD
                     RDRFIEIWDRINLYSQTRGINRFKGLVISLEEYGYDKNFSQLKHWVNTTSELSNRSLI
                     QAIQEHPSHDLQLALMWSEKVNIGIKTLHTQDRPFRLVKRSLAIIKEFADIAVVSSAN
                     NEAIIDEWTRHGLLPFVDLVYGQDEGTKTHCLNQLSQYGYQPNHILMVGDSPGDLNSA
                     NEAGVNFFPILCGDEDNSWNQLVLETLGKLVYQKFTLQYQSQLIAKFNANLTA"
     gene            4021..5781
                     /locus_tag="PXB38_001619"
                     /pseudo
     CDS             4021..5781
                     /locus_tag="PXB38_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609746.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-hexosaminidase"
     gene            5809..7209
                     /locus_tag="PXB38_001620"
     CDS             5809..7209
                     /locus_tag="PXB38_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353925.1"
                     /translation="MSSVQRPFGLKDKLAYMAGDIANDLSFMMSAFFLMLFYTNVLQI
                     EGYVIGILFLVSRIIDAFTDVGMGRLVDTIKPFKEGRFRGLLRRTSPFVCIFGFLMFL
                     HVVKDWAYEAKLIYVCVTYIIWGSFAYTAVNIPYGSMATVISNKPEDRASLSVFRAIG
                     ANIALLFISLCIPLVIYQEVDGKQVIQPEMFTIVMGVFMVIAFLLYQYCWLNTCERVQ
                     LPEKEGRRHNNADCLSDVKSIFTSLFSNRPLMIFILVAIILLLANLLIGTMNPYLYVD
                     YFNNKLGLSIGGMLPVIASFVVAPFAQRIVKRFGKKESAAIALLFTGVVYLALFFLKL
                     ENVWIYLATALIALLGLNYFMVVIWAFITDIIDAQYLKTNKREDGTIYAVYSFARKIG
                     QALAGGLGGFALSYVGYVAKAPSQSQETLNAVYNVATLVPAISCIIIFLLLKFVYPLS
                     KEVVDNNVAELEKRHH"
     gene            7271..8674
                     /gene="uxaC"
                     /locus_tag="PXB38_001621"
     CDS             7271..8674
                     /gene="uxaC"
                     /locus_tag="PXB38_001621"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HDL5353926.1"
                     /translation="MKQFLCEDFLLSTPTAQKLYHDYAKDQPIFDYHCHLNPKEIAEN
                     RQFNDLAEIWLEGDHYKWRAMRSAGVEERLITGDADKYSKYLAFAQTVPKCIGNPIYH
                     WTHLELRRPFGITDTLFSPQTAEKIWHQGKALLQQPEFSARGIMQQMNVKLVGTTDDP
                     IDSLEYHKAIAEDSTFDIEVVPSFRPDRAFKIELPLFNDYIEQLGNVADIEINSFDQL
                     KQALLKRIEHFDQQGCKSADHGIEIVRFAAIPDETKLTHILQKRLQNQPLAEEEIAQF
                     STALLVWLGTEYHKRNWVMQMHIGAIRNNNSRMFKLLGADSGFDSIGDRTFAEPLSRL
                     LDSMDQTDQLPKTILYCLNPRDNEMLGSMIGNFQTGGIAGKIQLGSGWWFNDQKDGME
                     RQLQQLSQLGLLSQFVGMLTDSRSFLSYTRHEYFRRILCEMIGGWVERGEAPNDLNLL
                     GNMVKGICYGNAKRYFK"
     gene            8684..9593
                     /locus_tag="PXB38_001622"
                     /pseudo
     CDS             8684..9593
                     /locus_tag="PXB38_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
     gene            9681..10319
                     /locus_tag="PXB38_001623"
     CDS             9681..10319
                     /locus_tag="PXB38_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL5353927.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVKANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
BASE COUNT         3149 a         2092 c         2110 g         3051 t
ORIGIN      
        1 tattttagaa actgagtttc tgaaaggttg agttatggga aacttaaaag aatggttttc
       61 agcaaatgat ctgctagaaa gaaaagttaa tggacttcct aaaagcccac aaggtatcaa
      121 taaaaaagca agaacacaga attggacaaa gagaaataag gacggagttc aaggtggagc
      181 agttgaatat cactacagct ctttaccaat gagcgtacaa gaagaacttg gttttactca
      241 aacgacaaca atagaagagc ctagaacatt tgtggcagcc caaaccgccg atgatatgga
      301 gcgtgtgcca ttttatgatg taaaagcctc cgcaggcttg ggggctttca atagcgaggt
      361 atacgcccct aatgactata ttgggctaag taaacgatgg ctagatgtgc gtggcttcta
      421 tttgagctat cttgcattta ttaccgcttc aggtgattca atgtacccaa ccatcagtga
      481 tggcgatatg ctattggtaa accgagccac cacccagcct aaagacggta aaatttatgt
      541 gttccgccaa ggcgagcagc tttgggttaa acgtgtgcaa ggcattatgg gcggtattcg
      601 cttaatcagc gataataaag agctatacag ccctattgat gtgatttttg atgaagcgtt
      661 agattttgag gttatcggac aggttgtgta cattggacac gagatgattt aaacgccatt
      721 taaagctact taaatcattt ttactttttc gttgttttaa tggtacaagc ggttagtttt
      781 agccattttt tcgcaattca ttatttttac ttttctctac ataaaacaaa ggggcaatgc
      841 accgcaaagc ccctgttttc aatacttctg tttcacttat tcccgaaaaa ttccgccaaa
      901 ttcctattat tcttttattt cttagtttta atggttctat acagtcaggc atttcatact
      961 ccagatcggt acgagtccaa tctaacaccg gcataaagtt atagcacacc gtatcaatgc
     1021 cgcagcttgc caaattacgc aaggtttgct tatagttatc aatccattgc tgatagttgc
     1081 cggtttgagt cttgatttct tcgtgaacag gcacactttc taccaccgac caagccagcc
     1141 ctttttcagc taataatgcc ttacgtttat taatttcctc aaccgaccac acctgcccat
     1201 taggaatatg gtgcaacgct gtcacaatcc ccgttgcccc tgcttgtctt acatcatcta
     1261 aagatactgg atcgtttggt ccataccaac gccatgcttg ttccatagta aactcctcat
     1321 ctaattaaaa attaacagcc aaagggctaa cattaaacag ataaccatca aaattcggat
     1381 cgtctaaatc cgataattca aacagctttt gttttacatt ttccaaatgc tgccacatca
     1441 tttttcgagc caatacagga tcttttcgct gtattgccgc aataatattt tcgtgatctt
     1501 ttaaccataa cgtgcggtaa ctttgatcgg gaatatgtga atgtaaccct ttccacatcg
     1561 gactattggt tcgatactcc cataaatctt tttgcatacg gataatcact tcattttgcg
     1621 ttatttcagc aatcgcttta tgaaaatctt catctgcaac ataatcttca tcaccgtgtt
     1681 ctaaagtcct gcgttcacgc tctaaaatct cttttaagtg taaaacatct gcccgagtgg
     1741 cttgaatagc agcaaactcg gcaatactac tttctaatag ctgccttgct tgcaacagtt
     1801 caaaaggacc aacatcaggc aactcttctg tttcctcagc atttgatttg ggtaaattaa
     1861 tcacataaac accggagcct ttacgcactt caattaaatt ttccagctca agcataatca
     1921 gtgcttcacg aataacggta cggctgacat taaagtaatt agataaatca cgctccggcg
     1981 gtaatttatc ccctactttg tatgcaccac ttaataattc tgcttttaat tcttgcccga
     2041 tttttttata agagcgtaga tcttccgctg ccattatttt gtttctctat agtattttaa
     2101 aaaggtttac caaaatagca cattacatac taaaagacca agaaacaaca gtaaattaaa
     2161 gcatatttta gttaaattta acaagaggta aaccagtgtg tcgtaatttt gtgatctata
     2221 tcacaaaatt actaacaatt ggtttaccag ttgtaaaagt ggtagtatat ttgccatact
     2281 ttaatcaccc ctgataggag ataagcaata tgaatgtttc aaaaaaccat aatttcaaag
     2341 ataaagttgt cgttattacg ggagctggag gtgtgctctg tgcatttttt gcacaagaaa
     2401 tagcaaaaac gggtgctaaa gtagctctat tagatattaa ccttgaatca gcagaaaaat
     2461 atgcacaggc tattgtgcaa aatggaggag cagccaaagc ttataaaacc aatgtgcttg
     2521 atttagaaag tattcagcaa actcgcaatg ccatcaacaa agactttggt acttgtgaca
     2581 cattaattaa tggtgcagga ggtaatagtc ctaaagccac caccgataat gaatttcatg
     2641 aatttaactt aactgatagt acaaaatcat tctttgaatt agataaaagt ggcattgaat
     2701 tcgtatttaa tctcaactat ttaggtacat tgctacctac tcaggtattt gcaaaagata
     2761 tgattggtaa aaaaggagcc agtatcatca atgtatcaag catgaatgcc tacacccctc
     2821 ttactaaaat tcctgcttac tctggagcta aagcagccat cagtaatttt actcagtggc
     2881 ttgccgttta tttctctagg gtaggaatcc gctgtaatgc aattgcccct ggctttctag
     2941 ttagcaacca aaatagaggg ttacttttcg ataatgaagg aaaccctact cctagagcga
     3001 ataaaatttt aactaatacc ccaatgggac gttttggtga agcgaatgaa ttgattgggg
     3061 gaattttatt cttaatggat gaaaattatt ccagcttcat aaatggtgtg gtattaccga
     3121 ttgatggagg tttctccgct tatagtggag tataggagaa tctcatgaca atatttacac
     3181 ctaagcacaa ctttattgta tgcattgatt cggatggatg tgcaatggat acaatgaaca
     3241 ttaagcatga ggagtgtttt ggcccctctg ctgttaaagt ttttgacatt accgatagag
     3301 atcgttttat tgaaatttgg gatagaatca atctgtactc tcaaacacgc ggcatcaacc
     3361 gatttaaagg gttggttatt tctctggaag agtatgggta tgacaaaaat ttcagccaat
     3421 taaaacattg ggtaaataca acttctgaat tatctaaccg ctcgcttatt caagctatac
     3481 aagagcaccc ttctcatgat cttcaacttg cattgatgtg gtcagaaaaa gtcaatattg
     3541 ggattaaaac tctacataca caagatagac catttcgttt agtaaaacgc tctcttgcta
     3601 ttattaaaga atttgctgat atcgccgtag taagttctgc aaataatgaa gcaattattg
     3661 atgagtggac acggcatggt ttactgcctt ttgttgatct tgtttatggg caagatgaag
     3721 gaacaaaaac tcactgttta aaccaattat cacaatatgg atatcagcca aatcatattt
     3781 taatggttgg agattctcct ggggatttaa atagtgccaa tgaagctggg gtcaatttct
     3841 tccctatatt atgtggagat gaagataact cctggaatca gttggtatta gagacattag
     3901 gaaaattggt ttaccaaaaa ttcactcttc aatatcaatc tcaattaatt gcaaaattca
     3961 atgcgaatct aaccgcttga tcccgtattt cacggttttg aagcgtaaat aggagaaatt
     4021 atgtctgttg atttaacaaa aaaaccttat tacttaaaag atgaagacat tcaatgggta
     4081 aacagcacta tcgctaatat gactctagaa gaaaaaatag gacaactttt tgtgaatatg
     4141 ggatcgagta gaacagagga atatctcact gatattttaa accgctacca tattggtgca
     4201 gtacgttata acccaggtcc ggctgaagaa gtttataacc aaaactatat tttacaaacc
     4261 aaaagcaaaa tccctctatt aattgcggct aacactgaag ctggaggtaa cggtgcttgt
     4321 agtgatggaa cggaaattgg tttacaggtc aaaattggtg caacaggtga tgccaaatat
     4381 gcttatgaaa tggggcgtgt agcaggtatt gaggcagccg ctattggctg taactggagt
     4441 tttgcaccta tcgttgatat tagctataac tggagaaatc caattatttc taaccgggtt
     4501 tttggctcta atccagataa agtactggaa atgtccttag cttatatgaa aggcattcaa
     4561 gaaagcggaa ttgcgccaac agccaaacat ttccctggag atggggtcga tgaaagagat
     4621 caacaccttt cttttagcgt aaacagcttc agttgtgaag agtgagataa ctcttttgga
     4681 aaagtctatc aaggtctaat tgatgccggt ttaccctcaa taatggctgg tcatatccat
     4741 ctaccagctt acgagcaaca ttttaaccct aatttatcgt atgaagactg tttacccgca
     4801 acactttcaa agccaatttt aactgattta ttacgaggta aattaggttt taacggggtt
     4861 gttgtaacag atgcaagtca tatggttgca atgacatccg ctatgaaacg cagtgaaatg
     4921 ctgccgaaag cgattgcagc tggttgcgat ttattccttt tctttaatga tcctgatgaa
     4981 gattttgatt atatgatggc cggctataaa aacggcatta ttacagaaga acgtctaaac
     5041 gatgctctta cccgtattct aggattaaaa gcaaaattag gattacataa tcgcccgaaa
     5101 gaaacattac ttgaacctaa agaacaagca ctggcaaaaa taggtttacc agaacataaa
     5161 gtgatcttcc gtgatgtcgc agataaagca atcacattag tgaagaataa acaagatatt
     5221 ttacctatta atgttgagcg ttttccaaga gtcttacttg tgaatgtcaa aggcacagat
     5281 ggtggattcg gtaaaatggt tgcaggtagc caacgtagcg caacagaaat cctaaaagaa
     5341 aaactggcag aaaaagggtt tacggtctct atttatacat cacctatgga taatatcctc
     5401 aaaatgtcag atgaagagca agtgaatacc atccgtaatg aatactcgca aaaacgccca
     5461 attacaacat taaccgatca ctatgatctc attatcaatg ttgcaaatgt tcaaatgagt
     5521 actgttcagc gtattgtatg gcaagctacc aaaggaacac ctgatattcc attttatgtg
     5581 catgaagtac ctacaatttt cgtttccgta caatgcccat tccatttagt tgatgttcca
     5641 caagtaaaaa cttacatcaa tgcttatgat ggtaaagagc caacaataga actgctagtc
     5701 gaaaaattaa tgggtaattc tgagtttaaa ggcgttagcc cagttgatgc attctgtggt
     5761 tataaagata cccatattta atccattatt cctaataagg agttcttcat gagttcagta
     5821 caaagacctt ttggtctaaa ggataaactt gcttatatgg caggagatat tgccaatgac
     5881 ctcagcttta tgatgtctgc attcttctta atgctgtttt ataccaatgt attacaaatc
     5941 gaaggctatg ttatcggtat tttattttta gtctctcgta tcatcgatgc ttttactgat
     6001 gttggtatgg ggcgattggt tgatacaatt aagcctttca aagaagggcg gttcagaggg
     6061 ctgttacgca gaacatcgcc atttgtttgt atctttggct ttttaatgtt tttacacgtc
     6121 gttaaagatt gggcatatga agcaaaactt atctatgtat gtgtgaccta cattatttgg
     6181 ggaagctttg catatacagc agtaaatatt ccttatggct caatggccac tgttatcagc
     6241 aacaaaccag aagatcgcgc atcactttcc gtatttcgtg caataggtgc taacattgcc
     6301 ctactattta tctcattgtg tatcccattg gtaatttacc aagaagttga tggtaaacag
     6361 gtcattcagc ctgaaatgtt tactattgtg atgggagtgt ttatggtgat cgcatttctc
     6421 ctctatcaat actgctggct caatacctgt gaacgggtgc agttacctga aaaggaagga
     6481 agacgccaca acaatgctga ttgtttatcc gatgtaaaga gtatctttac cagcctattt
     6541 agtaatagac cgttaatgat cttcatttta gttgcgatta ttctgttatt ggcaaatcta
     6601 ctgatcggca caatgaatcc ctatctctac gttgattact ttaataacaa actcggatta
     6661 tctatcggag gaatgctgcc tgtgatcgcc tcatttgtag tagccccctt tgctcaacgt
     6721 attgtcaaac gctttggcaa aaaagagtct gccgcaatcg cgctactctt caccggtgta
     6781 gtttatctcg ctctcttttt cctaaaattg gaaaatgttt ggatctattt agctaccgct
     6841 ctgattgcat tgctgggttt aaactacttt atggttgtga tctgggcttt cattacggat
     6901 attattgatg cgcaatatct taaaacaaat aaacgagaag acggtacgat ttatgcggtt
     6961 tactcgtttg cacgcaaaat cgggcaagcg cttgctggtg gtctcggtgg tttcgcatta
     7021 agttatgtcg gctatgtcgc caaagcacca agccaaagtc aggagacttt aaatgcggtc
     7081 tataatgttg ccacactagt gccggcaatc tcttgtatta ttattttcct gctgctgaaa
     7141 tttgtttatc cactctccaa agaagtggtc gataacaatg tcgcagaatt agaaaaacgt
     7201 caccattaac ctattggggt aggcaataac acctacccct actttgttac caatcaatct
     7261 cgagctaaat atgaaacaat ttttatgtga agacttttta ctctcaactc caacggcaca
     7321 aaagctctat cacgactatg ccaaagatca gccgattttt gactaccact gccatttaaa
     7381 cccaaaagaa attgcggaaa atcgccaatt taatgattta gccgaaatct ggctggaagg
     7441 cgatcactac aaatggcggg caatgcgttc tgccggtgtg gaagagcgtt taattacagg
     7501 cgatgctgat aaatacagta aatacttagc ctttgcacaa actgtgccaa aatgtatcgg
     7561 caacccgatt taccattgga cgcatttaga acttcgccgt ccgtttggga ttactgacac
     7621 gctgttttcg ccacaaactg cagaaaaaat ttggcatcaa ggcaaagcat tactgcaaca
     7681 gcctgaattt tccgcccgtg gcattatgca acagatgaat gtgaaattag tcggaactac
     7741 tgatgacccg attgattctt tggaatacca caaagcgatt gcggaagata gcacctttga
     7801 cattgaggtt gtgccaagtt tccgacctga ccgagcattt aaaatcgaac tgccgctgtt
     7861 taatgactac attgagcagc tcggtaacgt tgcggatatt gaaatcaaca gcttcgatca
     7921 attaaagcaa gcactactaa aacggattga acatttcgat cagcaggggt gtaaatccgc
     7981 cgatcacggc attgaaatcg tacgttttgc cgctattcct gatgaaacaa aacttaccca
     8041 tattttgcaa aaaagattgc aaaatcaacc gcttgcagaa gaggaaatcg cacaattcag
     8101 cacggcatta ttagtctggt taggcacgga ataccacaaa cgcaactggg tgatgcaaat
     8161 gcacattggg gcaatccgca ataataacag ccgtatgttt aagttactcg gggcagacag
     8221 cggatttgac tccattggcg accgcacctt tgccgagcca ctctcccgtt tattagacag
     8281 tatggatcaa actgatcaac ttccgaaaac cattttatat tgcttaaatc cgcgtgataa
     8341 cgaaatgctc ggtagtatga tcggcaattt ccaaaccggc ggcattgctg gcaaaatcca
     8401 attgggttca ggctggtggt tcaatgatca gaaagatgga atggaacgcc aactgcaaca
     8461 gctttcacaa ttaggtttgc ttagccaatt tgtcggtatg ctaaccgatt cccgtagttt
     8521 cttatcttac acccgccacg aatacttccg ccgtattctt tgcgaaatga ttggtggctg
     8581 ggttgaacgg ggtgaagcac cgaacgatct gaatttactt ggcaatatgg taaaaggtat
     8641 ttgctacggt aatgcaaaac gttatttcaa ataggagata acaatgaaaa aaatcgctct
     8701 aattggcgaa tgtatgatcg aactcaacgg cgaacccttt ggcaatatgc gacaaaccta
     8761 cggcggtgat tctctcaaca ccgctaccta tttggctcgg gtgagttcgc ctgaacagat
     8821 tgaggtgcgt tatatttctg ctcttggtac ggataaactc agtcaaggta tgttggcagc
     8881 gtgacaagca ccgccagccg gggctgtatc tgattcagtt ggataagcag ggcgagcgga
     8941 cattcctgta ttggcgaaat caatctgccg cccgttattt gttgcaacac cccgactatt
     9001 caaaagcact ctcggcgtta cacgaggtgg atatggttta cttgagcggt atcagccttg
     9061 ccatcttgcc ggaaaacgac cgcactttgc tgattgcaca gttgcgtgag ctcaaaacac
     9121 aaggggtgaa aatcgccttt gacagcaatt accggccgaa actgtgggaa agtgtggctg
     9181 ctgcccaagc tcactatgcc gagctgttgc aattagtcga tttagctctc gtgacctttg
     9241 atgacgagca actgctttgg ggcgatatga atgagcaagc cacctttgac cgtctggctc
     9301 aatatggcat tcataccatt gtggtgaaac aaggctctct gggggcaacg gtgttgcaaa
     9361 acggggagcg tacttttgtg ccaactgttg cggtagagaa ggtggtcgat accacttccg
     9421 ccggcgattc ctttaatgcc ggcttcctta acggttactt attgggtaaa gatgtcgtta
     9481 cctgttgcca acaaggaaat gccgttgccg gtatcgtcat tcagcacaaa ggggcgatta
     9541 ttgccaaatc cgccactact catttgaaat cgcagtttga acaatccatt tagaccaaca
     9601 atagcacaac gacaagcggt taaatttgca aaatttttta caaaagcgac cgcttgcaat
     9661 acaacataat gaggctagaa atgcgttaca ccaccgaaca aatcattgaa aaattaagac
     9721 aactgaaagt tgttcccgtg attgctttgg ataaagcaga agatatttta ccgctggcga
     9781 aaaccctttc cgaaaacggt ttgccggtgg tggaaatcac tttccgctca gaagcagctg
     9841 aagaggcaat taaattagtg aaagccaact atccggaagt attgattgca gcaggcacag
     9901 tgctgaccaa agagcaagtc ttaactgcca aaaacgctgg agcggattgc attgtgactc
     9961 cgggttttaa tccgactatc gttaagtatt gccaagtgtt aggtttgcct gttacaccgg
    10021 gtgtgaacaa cccgatggcg attgaagccg ccctcgaact tggcatacaa gcagttaaat
    10081 ttttccctgc cgaagccagt ggcggcgtga aaatgattaa agccctgctc ggcccttacg
    10141 gcaacttaca gattatgccg accggcggca tctcgccaca aaacatcaac gactacctcg
    10201 ccattcccaa cgtagtcgcc tgcggcggct cttggtttgt ggagaaatcc ctgattaagg
    10261 aacagaagtg ggaggagatt gggaaattga cgaaggaagt ggttgagttg gtgaaataac
    10321 catttaaagt tccaagcaat gagctatttt ctacccaaaa tagatctctt tcctcttatt
    10381 tacaaagcat aacaaatatt gc
//
LOCUS       DANLUT010000088        10324 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLUT010000088 DANLUT010000000
VERSION     DANLUT010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10324
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            87..1349
                     /locus_tag="PXB38_001624"
     CDS             87..1349
                     /locus_tag="PXB38_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL5353928.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIVFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            1494..2270
                     /gene="deoC"
                     /locus_tag="PXB38_001625"
     CDS             1494..2270
                     /gene="deoC"
                     /locus_tag="PXB38_001625"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5353929.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGKLKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            2291..3010
                     /gene="deoD"
                     /locus_tag="PXB38_001626"
     CDS             2291..3010
                     /gene="deoD"
                     /locus_tag="PXB38_001626"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL5353930.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(3086..3937)
                     /locus_tag="PXB38_001627"
     CDS             complement(3086..3937)
                     /locus_tag="PXB38_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL5353931.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKRR"
     gene            4052..4483
                     /locus_tag="PXB38_001628"
     CDS             4052..4483
                     /locus_tag="PXB38_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL5353932.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            4500..5180
                     /locus_tag="PXB38_001629"
     CDS             4500..5180
                     /locus_tag="PXB38_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL5353933.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            5244..6368
                     /locus_tag="PXB38_001630"
     CDS             5244..6368
                     /locus_tag="PXB38_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL5353934.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNLTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNWQPMDI"
     gene            6452..7069
                     /locus_tag="PXB38_001631"
     CDS             6452..7069
                     /locus_tag="PXB38_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL5353935.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVIMLANRSDLGAFGDYAKAQTPLYFNYIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            7212..8153
                     /gene="argC"
                     /locus_tag="PXB38_001632"
     CDS             7212..8153
                     /gene="argC"
                     /locus_tag="PXB38_001632"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL5353936.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENARICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIANYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLPIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKGSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            8245..9099
                     /gene="argB"
                     /locus_tag="PXB38_001633"
     CDS             8245..9099
                     /gene="argB"
                     /locus_tag="PXB38_001633"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL5353937.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGPEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKANKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            9112..10296
                     /locus_tag="PXB38_001634"
     CDS             9112..10296
                     /locus_tag="PXB38_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL5353938.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLAATGQEVFHKHFF
                     PFTEGFEYLPVNDIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
BASE COUNT         2938 a         2062 c         2412 g         2912 t
ORIGIN      
        1 gaatgatgat aatttcacaa gattttttgc ctaaaaatag gtatagtatc gtcacctttt
       61 ttaatcaatt tataattaga ggttctatgg gtactcttaa cagcttttta ggcattattg
      121 ttttactatt cattgcattt ttattttcga gcaataaacg tgcaataaac gtgcgtaccg
      181 tattaggcgc attagcattg caggtagcta ttggtgcatt ggtgctttat gtgccggcag
      241 ggcgtgatgc cttgaatgcg atggcaaccg gtgtgtcaaa agtgatttct tacggtaatg
      301 aagggatttc atttttattc ggtggcttag tcagcgacaa aatgtttgaa gtatttggcg
      361 gcggcggctt tgtgttcgct ttccgtgtac ttccggtgat tgttttcttc tctgcactca
      421 tttctttgct ttactacatt ggtgtgatgc aatgggtaat ccgtatttta ggtggtttat
      481 tacaaaaagc attaggtaca tctaaagcgg aatctatgtc tgcggcagcg aatattttcg
      541 ttggtcaaac tgaagctcca ttggtagtaa aaccttatat cagcaaaatg acagaatctg
      601 aactctttgc gattatggca gggggcttag cttctattgc aggttctgtt atggctggtt
      661 acgcaggaat gggcgtacca ttaacttact taatcgcagc ctcctttatg gcggctccgg
      721 cagggttatt attcgccaaa attatggtac cacaaaccga aaaattccgt gatgaactag
      781 aagcggtaga tttagaaaaa ccggcaaata ttcttgatgc agcagcttca ggtgcttctt
      841 caggtatgca actggcatta aacgtagggg caatgttaat tgcattcgtg gcgttaattg
      901 cattagtgaa tggtatttta ggcggtattg gcggctggtt cggttatgat accttaaact
      961 taggtcaaat tttcggctgg gtatttaaac cgcttgcgtg ggtaatcggt gtgccttggg
     1021 aagaagcaga aattgcgggg cagatgatcg gcttaaaatt agcggtaaat gaattcgtgg
     1081 gttatttaga gtttgctaaa tacttagctc ctgagtcaac cgtacattta acggataaaa
     1141 ctgttgcgat tattaccttt gcactttgtg gctttgcgaa cttcagctcg attgcgattt
     1201 taatcggtgg tatcggggca atggctccaa gccgtcgtgg tgatattgcc cgacttggga
     1261 ttaaagccgt cattgctggc tcacttgcca acttaatgag tgcaaccatt gccggcttgt
     1321 ttatcggctt gggtggagca gttctctaat ccagtttgta taaaaccact agaaatagtg
     1381 gttttatctt tttttatctg acgtaaacgg ttgcttttgg tttgtctatt tacaagcggt
     1441 cagattttta taaaatttta ccaaccacca cgcatttaat aaaaggagac actatgaatt
     1501 taaaaaaatc cgctgagatt gctctttcgt tgatggatct caccacatta aatgacaatg
     1561 atactgatga gaaagtcatc gcattatgcc aacaagcgaa caccaagttt ggcacaccgg
     1621 cagcaatttg catttatcca cgttttatcc cgattgcccg caaagcattg aaacagcaag
     1681 gtatcgagca agtaaaaatt gcgacagtca cgaatttccc tcacggtaat gatgatattg
     1741 aaattgcggt agctgagacc aaagccgcag ttgcttatgg ggcagatgag gtagatgtgg
     1801 tattccctta taaagcatta attgcaggta atgagcaaat aggtttcgac ttggtaaaac
     1861 aatgcaaagc agtttgtgct gccaataatg tgttgcttaa agtgattatt gaaaccggca
     1921 agttaaaatc agcagagctt attcgcaaag caagcgaaat ttcgattcaa gcaggggctg
     1981 attttattaa aacctcaacc ggcaaggtgg cagtgaatgc tacccttgaa tctgcccgca
     2041 ttatgcttga aaccattcgt gatttaggtg tggcagaccg tgttggcttt aaagctgcag
     2101 gtggggtaaa aacctcggaa gaagccgccc aatatcttgc acttgcggaa tctattttag
     2161 gcaatgactg ggtgagtgca tcacattttc gcttcggtgc atcaagttta ttagctaatt
     2221 tattagcaac attgaatgat gaacagcagc aagctgttca aggttattaa ttaataaaga
     2281 ggaacataaa atggctactc cacacattaa cgcacctgaa ggtgctttcg ctgacgttgt
     2341 aattatgccg ggcgatccgc ttcgtgctaa atatatcgct gaaacctttt tagaagatgc
     2401 aaaagaagtg accaatgttc gcaatatgtt aggctacacc ggcacttata aaggtcgccg
     2461 catttcagta atggggcacg gtatggggat tccatcttgc tcgatttacg ctaaagaatt
     2521 aattactgaa tatggcgtga agaaaattat ccgtgtcggc tcgtgcggtg cggtacgtaa
     2581 tgatgtcaaa gtgcgtgata ttgtcatcgg tgttggggct tgtaccgatt ctaaagtaaa
     2641 ccgtattcgc ttccgtgata acgattttgc ggcgattgct gattttgata tgacattagc
     2701 tgctcaccaa gcagctaaag cgaaaggcat tgaagctcgt ttcggtaatt tattctcagc
     2761 cgatttattc tactcacctg atgtcgaaat gtttgatgta atggaaaaat acggcatttt
     2821 aggcgtagaa atggaagcag caggcattta tgcggtagcg gcagagtatg gagcaaaagc
     2881 attagcaatt tgcaccgttt cagaccatat ccgcaccggt gagcaaacta cctctgaaga
     2941 acgtcaatta acctttaatg gtatgattga aattgcgtta gagtcagtat taattggcga
     3001 taagcagtaa tttctaacct gacaagcggt gaaattttgc aaaaaatttg cagaatttga
     3061 ccgcttgtta tttttgattc ttcctttatc ttcttttcgg gctttcgcca aactgccttt
     3121 tatattctcg actaaactgg cttgggcttt catagccgac ttgataggcg gtttcactca
     3181 cgcttactcc tgcttgtagt ttttcccttg ccgcatttag tcttaacgat ttctgatatt
     3241 gcagtggtgt cattgaagtt acgcttttaa aatgagcgta aaaccccgcc acgctcattc
     3301 ctacctcttc agccagtgct gacatattta gtgtatcggc aaattttctt tctaagattt
     3361 ttgttgcatt ggcaatttta gcaatattgc catcttgaga gagtagagag cgtatatagc
     3421 caccttgctc agattgcaat aaatagaaat agagttcgtt taatatcaat ggtgcaagaa
     3481 aatgaatatg atttggagaa ttaagcaaat ttagtaagcg taacaaacag tctttaattt
     3541 cattctccag ctcccattta gtgcgttgat taatgttttc acttattttc tgtgggggaa
     3601 gctgcgtgat aattttggca ataagatcaa aatccaagcg tagtgaaatc gcaagataag
     3661 gctgattttc tgcaactgat aaggtttggg taacaatcgg caaattcaca gggcaaaaca
     3721 tcatttcctg attaccgaag acttggcaat gtccattggt acagatttgc cgctcgccta
     3781 ataatactac acataaactt gggtcttgga tataaccgtt aaatctaata gaacgatcgg
     3841 cagcgtgaac ggttagccct gaaatgggag tagcccaaag ttcatttttc ggagcgaggg
     3901 caaaaataga ttcaataata gctcgatgag tttgcataat aatctcactt ttagaaaatt
     3961 aggcatattt tatagaaaat caggcaagac gacaaatagc aaaaagcgga taatatcccc
     4021 aatcaaataa agcatttaat aggagcaaaa tatgaaaatt ttttatcaca catcagcaac
     4081 tgcaaccggt ggtcgtgacg gcagaaccca agtggatgac ggttctatcg gttttgattt
     4141 agtcggtttc caaaatgaaa gtggcaaagt aggcactaat ccggaacaat tattcgcaat
     4201 gggctatgct gcctgctttg acagtgcaat gaatcacgtt gccccaacct taggcattaa
     4261 gccaaccaaa tccagtacca ctgttgcagt tgggattggt caaaaagctg atggtgcttt
     4321 cggcttagat ttagatatta ccattactgt ggaaggcatt agtgcggaag aagcgaaaac
     4381 tttaattagc aaggcacacg aagtttgccc atattcaaat gcaacccgtg gtaatgtaga
     4441 tgtgcgttta cacgttaaag tcgtgagtga atttgactta taaaaaataa ataggggaaa
     4501 tgaaaatgtt agattttgaa accacggtaa aaacacgaca atcaatccgc aagtttttac
     4561 cgcttccgat gacggaaact gaaatcaaac aaattcttgc cgatgcacaa aatgcccctt
     4621 cggcttgtaa tacacagccg tggttagtac acgttgcctc tggtgaaacg ctagcacgct
     4681 taaaagctcg ttttaaaaag acttttgaag cgggcattaa tgatgcggat tttgagttca
     4741 atcaaacgaa atttaccggt gactacgaac cacgttggcg taaccaatac agccacgttt
     4801 ttaccaccag ctatggcatt ccccgtgaag ataaagccgg tcgccaagtg gtgtatgatg
     4861 acaatattgt cggttatggt gcgccacata tggcattcct atttatgcca agcattgacg
     4921 gacacgatgt caatattgcc agcgatgttg gtatgtattc gcaaactttc ttgctctcac
     4981 tcaccgctcg tggttttggc ggcattccgc agcttgccct tgcgatgttt gctaaagatg
     5041 tgcgtgaaga gttaggcatt cctgaacatt acaagctcct ccacgccatt tctttcggac
     5101 acccagattg ggacgctatg cagaacaaac accatttagg gcgtgtgccg gtggaagaga
     5161 gtgcgacctt acattggtaa taaacaagcg gttgattttt cgcaaaaatt tgcgaaatca
     5221 accgtatttt ttaggagaat acgatgataa atttatttac cccttatact ctgaataacg
     5281 atgtagaaat taaaaaccgc cttgtagttg ccccaatgac ccattccgcc tccaacgatg
     5341 acggcacaat tagcgagcaa gaacgccatt tcttgcataa tcgtgcagca gatatgggct
     5401 tatttatcac cgcagcaacc ggggtaatgc gtaacggcaa agcgttttac ggtcagccgg
     5461 aagctcttga tgaacgctat ttggcaagcc tgacagaaac tgccaatatc ttgaaaaatc
     5521 aaggcaccaa agcgattttg caaattttcc acggtggggc acaagctatt cctgccttgc
     5581 ttgacggggc gaatgcagtt gcgccgtccg agcacgccaa cggtgctaaa gccctaacgg
     5641 cggacgaagt gaagcaaatg atccaagctt tcgctaatgc caccgattta gctattcaag
     5701 ccggttttga tggtgtggaa attcacgggg cgaacggcta tttaattcaa caatttttct
     5761 ctactgaatt taatcaacgc actgatgaat ggggcggtag ccttgaaaaa cgcttgcgtt
     5821 tcccgttagc ggtggttgag gcagcggtca gcgtgcgtga aaaacaccaa cgccctgatt
     5881 ttattatcgg ctaccgtttc tcaccggaag agccgggcga acacggctta accatgaccg
     5941 atacctacgc cctgattgat gctttgtgcg aaaagccgtt gcaatacttg cacatttcac
     6001 tctgggattt cggcaaaaaa gcccgccgtg gtgcagatac caacctcacc cgtatgcaac
     6061 tggtacacca acacatcaac gggcgtttac cgctgatcgg cgtgggtaac ttattaaccg
     6121 gtgaacagat ccgtaaagct tatgcaacag gctgggcaga atttatcgcc ttaggtaaag
     6181 cggtaatgct caacccgaac gtggcgacct tgttgaaaga taatcgagac agtgagattg
     6241 tcagcgaact cgacccgcaa caagccgacc actacggcat tcccgataga ctatggggct
     6301 actgcgtgca aggtggtgct tggttaccgc cgcttaaagg gcaaaactgg caaccaatgg
     6361 atatttaatc attacagaca agcggtcatt tttttgtaaa aatttgcaat taagtgaccg
     6421 cattttttca attatctgaa ggagaaaaat tatgattacg ttacattacc tgaacagttc
     6481 ctgctctcac cgcatcgttt ggttgttgga agccttaggc ttggattacg agctaaaaat
     6541 ctaccatcgt gaagagagcg gttttgcacc tatggaggta aaagccttgc acccacttgg
     6601 caaagcccct gtgttgcaag atggcgattt ggtgcttgcc gaaggcaatg cgattatcca
     6661 gcatctgatt gcccgttacg ccgaagggaa atttgagccg actcgtggta gcgaagccta
     6721 ttcaatgtat cactactggt tgtcgatttc tgcttcatta ttctcggcaa accttgtgat
     6781 aatgttggct aatcgctctg atctcggagc ttttggcgac tacgcaaaag cgcagactcc
     6841 gctgtatttt aactatattg agcaaacact ttcagataaa aaatggattg tgggtgatga
     6901 actaaccggt gcggattttt ctctctgttt cccactacaa tgggggcgta attttgttga
     6961 aatggcaaat tacccgaata ttgcacgcta tttagaacag gtggaaaatc accctgctta
     7021 ccaaaaagcg aatcaaaaag ccctgaagct tgatatgaat agattttaat actcttttta
     7081 atccctaaca ttttgttagg gatttttgaa tataaaatca attaatttga ataattattc
     7141 aaaaataaac ttgagtttag ccttaaatag ccttagacta ccgagcagaa aaagtcaaag
     7201 aaggattttc aatgagcaaa tacaagattt ttgttgatgg ggcagtagga acaaccgggc
     7261 tacgcattca cgaacgttta agccaagcgg acgatattga attattaacc ttgcccgaag
     7321 agcagcggaa agatttgaac gcccgtgtgg caaaagtcgc agaggcggat ttaactttcc
     7381 tctgtttgcc ggatgaagcc tcaaaagaat tagtagcaaa tgcaccggaa aatgcccgaa
     7441 tttgcgatac ttcaaccgct catcgggtca atcctaattg ggtttatggt tttccggaat
     7501 tgagcggaca acgtgaaaaa atccaaaatg ccaagcgtgt tgcggtgccg ggttgccatg
     7561 ccacgggcta tattgcgttg gttcgtccac tggtggaaaa agggattctg cccgccgatt
     7621 accctttaag ttgtcattcc ttaaccggct attcaggcgg tggcaaagcg atgattgcta
     7681 actatgaaaa tgaaaacagc ccaaatgctt tcaatgcccc tcgtgtttac ggtttaactc
     7741 tccaacacaa acatttgcct gaaatgcagg cagttaccca aatgcaaaac ccaccgattt
     7801 tcacccctgt ggttgccgat tattacagcg gaatgttagt cactgtgcca ttgccgatct
     7861 tcgccttaca agcggtcaaa tccggcgaag aaattgcaaa tttgctcgcc gattactacc
     7921 aaaccagccg actaattcac gttcaccctt tccaatctct acccgaagac ggaatgcttg
     7981 ccgcgaatgc ttatgcaggt aaaggcagct tagagatttt tatttacggc aacagcaccc
     8041 aacttttact tgctgcccgt tttgacaatt taggcaaagg ggcatcaggt gccgcagtgc
     8101 agtgtatgaa tattatgttg ggaagagatg aggttgaggg gttagagctt taaatataaa
     8161 tgtagggacg ggtcctgtgc ccgtccgaat atgggcgatg attatcggac aggcacagga
     8221 cctgtcccta caagagaaag aaatatgcaa caacaagaaa tcaatcaatt tgcaaattta
     8281 ttagaaaaat ccaccgcttg cttggtgaaa tggcagggta aaatcattgt ggtgaaatat
     8341 ggcggtaacg caatgattaa tgaggaactg aaaaaatcag tgatggcaga tctgctgtta
     8401 cttcatcgtt taggcgtaaa agtggtactg gtacacggtg gcgggccgga gatttcacaa
     8461 ggcgtgaaat tattgggtaa agaaccgcaa tttatcaacg ggttgcgtgt taccgatagc
     8521 gatacgatta acgtggtttt gcaaatgttg gcaggcaaag ctaataaaag ccttgtcgcc
     8581 ttattaaaag ggaaaggcat tgggctgtgt ggtattgatg gggcgatgtt gcaatgcaaa
     8641 aaattagagg cagaggtgga ttacggcttt gtgggcgata ttgtgaaagt cgatccaact
     8701 gtgattgaaa ttgctcttaa tgcaggcttg attccggttg tttccacggt gggcgttgat
     8761 gaaaacgggc aggcttataa cattaatgca gacaccgctg ccagcgagat tgcgattgcg
     8821 ttacaagcgg aaaaattggt ctcgatgact gatattgcag gtttattgcg agatcgcttt
     8881 gatgaaagca ccttaattcc ggaagtggaa gtaagcgaag tgcagtccct gattgagcaa
     8941 ggcattattg ccggtgggat gatccccaaa attgcgtgct gtaccgattt catcagagct
     9001 ggtggctctg aggcaaatat tattgacggg cgaatcgacc acgccatttt ggtagaaatg
     9061 ttcggtggca aaaacggcac acggttttat aaaaaataac aggaaagtga aatgacaagc
     9121 agtaatacga ttaagcaatt agataaggat tatatcgccc aaacctatgg cagatttgac
     9181 cttgcactgt cgcacggaaa aggctgtgaa gtgtgggatt ttgagggcaa taagtatctt
     9241 gattttacca gtggcattgg ggtaaatagt ttaggctggg cggatgagga ttggctacaa
     9301 gctgttacca cacaagccgg caaattagct cacacctcaa acctgttttt taccgaaccg
     9361 gcaagccaat tagcccaaaa attagtggct gcaagcggtc taaaacgggc atttttttgc
     9421 aattcagggg cagaggcaaa tgaaggagca attaaaaccg cccgcaaata tagtttcgac
     9481 aaatacggtt ccggtcgttc aacggtttta accctcgtga actcttttca cggacgaacc
     9541 atttcaaccc tcgcagccac tgggcaagag gtattccaca agcatttttt cccctttaca
     9601 gagggctttg aatatttacc tgtaaatgac attgaggcac tgaaagctcg cttggaaact
     9661 gagaacgttt gcgggatttt gctggaggtg gtgcagggcg agggcggtgt ttgcccatta
     9721 gaggcggatt atctgcacgc cgtgcaaagc ctgtgccaag aaaaagatat tttatttatg
     9781 attgatgagg tgcaaaccgg cattgggcga acgggcacac tttttgctta tcaacaattt
     9841 gatttaactc ctggtttagt cacgctcgct aaaggcttgg gcggcggctt gccgattggt
     9901 gctttcctgt taggcgaaaa agtggaaatg acattaggca aaagcgacca cggctcaacc
     9961 tttggtggca atcctgtttc ctgtgctgct gcaaatgtag taatcgataa aataaacgcc
    10021 gaatttctcg cccaagtgca acaaaaaggg cagttgttac agcaacgctt agcgagctta
    10081 ccaaaagtta aatccgtttc aggcttaggt ttaatgctcg gcgtagaatt tgaggaaggc
    10141 attttagccg ctgatattgt tgcaaaatgt atcaacaaag gtgtgctgtt tttaaccgct
    10201 aaaagtaagt taaggttact cccaccgctg atgatctctg aacaacagat agaacaagga
    10261 atcagagtgt tagaggatgt cttgaaagat tcttgagtta ttataaacag taggaatatc
    10321 ttct
//
LOCUS       DANLUT010000089        10242 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLUT010000089 DANLUT010000000
VERSION     DANLUT010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10242
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            91..225
                     /locus_tag="PXB38_001635"
     CDS             91..225
                     /locus_tag="PXB38_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL5353939.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            229..1392
                     /gene="torC"
                     /locus_tag="PXB38_001636"
     CDS             229..1392
                     /gene="torC"
                     /locus_tag="PXB38_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL5353940.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHNYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1492..3957
                     /gene="torA"
                     /locus_tag="PXB38_001637"
     CDS             1492..3957
                     /gene="torA"
                     /locus_tag="PXB38_001637"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5353941.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTHNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLAGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENKGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFVGNAPAPNGFNGAIEVTA"
     gene            3966..4556
                     /gene="torD"
                     /locus_tag="PXB38_001638"
     CDS             3966..4556
                     /gene="torD"
                     /locus_tag="PXB38_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL5353942.1"
                     /translation="MKSDISREERQFIYAWFNAMLARELSGEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAELTACNRLEFPHLELAADFAQLFLLEGSLSAIPYASAYLSGEA
                     LEQNLAEMDKLLSEFGLQVNRESKEPSDHLCVYLTLFDRLLAEKTVEVQQQFLQTQLM
                     SWLPAWFAKAKTVKTNTGVYSALLRLFEEVLLKEQR"
     gene            4696..5385
                     /locus_tag="PXB38_001639"
     CDS             4696..5385
                     /locus_tag="PXB38_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL5353943.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWRAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFLAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
     gene            5527..6423
                     /locus_tag="PXB38_001640"
     CDS             5527..6423
                     /locus_tag="PXB38_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353944.1"
                     /translation="MSIKKLTLATLILVGLTACGSSGSGSSSNKADLDKSKITVPKDI
                     KDKADKAKKEAEERLEKAKKEEERLAKEAKKAKEDAERLAKEDAERLAKEAEKAKGEA
                     QRLAKEKAEKAKAEAIKLKGTDDKEYAVIKEMKSSDNTRKGHIYNQPYSVVTASTLVT
                     LGETPNENDSLVEIKGLKTTALPQEGKATYSGKLFEFTNVDSSDLTYNVDFGKRKGSG
                     VAKGQETSIELKEGSIENGAISSTVTSSGGILDGKQGSYKVEFFGPKAEEIAGEVEIK
                     NIDSTGLSIKYGLAGSRGEISK"
     gene            6477..7871
                     /locus_tag="PXB38_001641"
     CDS             6477..7871
                     /locus_tag="PXB38_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5353945.1"
                     /translation="MHKKYFLFLLVSPLAMAETVEFQQDPTEFDSRQQAVKFEQEIAK
                     KDLKSTSYLAEDNRLKGIEQHINQAILRQDWAKLENLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFQQLKTDDLR
                     NAVNAALAQIEEEDSWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGADLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSRLQKRYIEKHTADRYNGYR
                     NQLTLGTQWQAVKNGRFFANIIGSREIAREKAQSSNKWLATFGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRNWHWHGIVPKLNFRYQKIDSNIADFYS
                     RSNKKLFMTLEKLF"
     gene            complement(7922..8542)
                     /gene="nudF"
                     /locus_tag="PXB38_001642"
     CDS             complement(7922..8542)
                     /gene="nudF"
                     /locus_tag="PXB38_001642"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HDL5353946.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPILDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTQVQHALSVWDSPGGQLERLHLFLGLIDSSKVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQLNYHKFN"
     gene            complement(8551..8970)
                     /gene="psiE"
                     /locus_tag="PXB38_001643"
     CDS             complement(8551..8970)
                     /gene="psiE"
                     /locus_tag="PXB38_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL5353947.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            complement(8980..9702)
                     /locus_tag="PXB38_001644"
     CDS             complement(8980..9702)
                     /locus_tag="PXB38_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL5353948.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            complement(9708..10136)
                     /locus_tag="PXB38_001645"
     CDS             complement(9708..10136)
                     /locus_tag="PXB38_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5353949.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
BASE COUNT         3116 a         2095 c         2307 g         2724 t
ORIGIN      
        1 aacttctcta tatttttgat tgatatcaag gcaaattgtt tctgaagata aaataattaa
       61 cacttattag ttaataaaaa aggagttgaa atgcgttcag aactattaaa aacgcttttg
      121 ttatcggggc tgattttacc gttattgatg gcatttgccg taggagctta cggctttatt
      181 gtgtggatgt tacaactgtt tgttattggt ttaccgggag cgtagaaaat gttaggttca
      241 atcaaagcat tatttactcg gcctgcaacc aaaatcgggt tgggagtgtt agttggtatc
      301 ggttttattg ccggagcaat tagctggcat caatttaata aagcgatgga tcataccagc
      361 actgaagagt tctgtgtgag ttgccactca atgcaacagc cgttagagga gcttaaaaaa
      421 accgcccact ggtcgaataa aagcggggta acggcaacct gttcaagctg ccacttaccg
      481 cacgattata ccgaaaaata tgcccgcaaa gtgcaggcaa gccgtgaggc gtgggcagaa
      541 ttatccggca aatataaaga agaaggctca tttgaaaaac accgcttaga aatggcagag
      601 cgtgagtggg caagatttgc cgccaatggt tcaaaagagt gtaaggcttg ccacaactat
      661 gagcgaatga attttgataa aatgggcgaa gcagctcgta aggcaatgaa accggctgcg
      721 gagaaagatc aaagttgtat ggattgccac aaaggcattg ctcaccactt accgaaagcc
      781 gatgaaaatg cactgaaatc gaagtttgat cagtttgtga ataaatcccc aaaccaaggc
      841 aaatcttact acaccaaagg gaatgccgaa ttatttctag acgaaggttt aagccaagct
      901 atcgggcaat tagaaaccgc cgtgccggtg gcatttgtgc aagcgggcaa aaatgcggat
      961 ttggttgagc tgacaatgtg gcgtaaagag aaaggtttcg gtcgcatttg gtatcacgat
     1021 ttcgggaaaa acattaccga tgcggttcta accaaagagt ttatggcaaa tcagccgaaa
     1081 tttgaggtgt tggaaaccaa agaagatccg attaccggct tgaattggca aaaagtgaaa
     1141 ctacaagcgt ggattggcaa agctcaatta ttagacgatg ttaccccaat ctgggcgaat
     1201 gcagaaaacc aatacaaaac ccaatgtagc acttgccaca gacagcctga tgtcgcccac
     1261 ttcgattcca acagctggat cggcttattc aacggaatgg tcggctttac caatatggat
     1321 aaacagaccg gcaaagaggt gctacgttat ttacaaatgc acgcctccga tagtgaagaa
     1381 gcgaagcatt aataatatta ctcccctctt tactaaagag gggaattaat cgagcgttga
     1441 ataacattct ctgtactaga tcacgttttt acaaataaag aaggacaaga tatgcaacaa
     1501 tctcgccgtc aatttttaaa aaatatgtct gtgatggctg ccgctgtcac aatgccgaat
     1561 ttcctcgtgc ctcgcaatgt gtttgcgagt gaagacctca gtcaatggaa agtttccggc
     1621 tctcactggg gggcaatgcg tgccaaaatt gagaacggac gagtggcgga gatcaagccg
     1681 ttcgagtttg ataaacaccc aaccgaaatg ctcaatggca tcaaaggctt aatttacagc
     1741 gattcccgta tccgctaccc gatggtgcgt ttggattggc ttaaaaaccg ccacaacagc
     1801 aacaccgcac agcgtggcga taaccgcttt gtgcgggtaa cgtgggacga agcccttgat
     1861 ctgttctacc aagagttaga acgagtgcaa aaagagtacg ggccgtgggc attacacacc
     1921 gctaacgtag gctggcgttc aaccggtcaa ttccacagtt gcggtaacca tatgatccga
     1981 gcgattgcaa tgcacggcaa cagtgtcggc accgcaggcg actactccac tggtgcaggg
     2041 cagactattc tgccgtatgt actgggttcg actgaagttt attcacaagg cacgtcttgg
     2101 gaaatcatct taaaagagag tgaaaacatc attttctggg caagcgaccc ggtgaaaaac
     2161 ctgcaagtgg gctggaactg cgaaacccac gaagcctatg cctacttgga aaaactgaag
     2221 gagaaagtgg cggcaaaagg cgtgaatgtg atctgtgttg atccggtgaa aagcaaaacc
     2281 cataatttct tgggttgcga gcagcagtac atcaatccac aaaccgatgt gccgtttatg
     2341 ttggcacttg cccacacgct ctacaccgag aacctgtacg acaagaaatt cttggatatg
     2401 tacacggtcg gctttgaaaa attcctgccg tatctgttag gcgaaaccga agacaaagtg
     2461 gcgaaaaccc cagaatgggc agccgaaatc tgtggcattt ctgccgacaa aatccgtgaa
     2521 tttgcccgaa tgcttgccgg caaacgcacc cagtttattt tcggctgggc aatccaacgc
     2581 caacaacacg gcgaacaacc gtattggatg ggagcggtgt tagcctcaat gttagggcaa
     2641 atcggcttgg caggcggtgg catcagctat gctcaccatt acagctcaat cggtattccg
     2701 gaatccggtg cggcaatgcc gggggcgttc ccgctcaaca ttgatgaagg gcaaaccccg
     2761 aaatacgaca ataaagatta caaaggctac agcgacacca ttccggtggc tcgtatgacc
     2821 gacagcttgc tccacgccgg cgaaaccatt gattacaacg gtaaaaaagt gacttacgcc
     2881 ccgttcaaaa tggcgatttt caccggttgt aatcaatggc accgccattc cgagcgtaac
     2941 aaaatgaagc aagcgttcca aaaactggaa accattgtct ccatcaacta cagctggacg
     3001 gcaacctgcc gtttctccga catcgtgctg ccggcttgta ccccgtttga acgcaacgac
     3061 attgacgcct acggctcata cagcaaccgt ggcgtgattg caatgcacaa gctggttgat
     3121 ccactctacg actctcgctc cgactttgag attttccgtg atctctgccg ccgtttcggt
     3181 aaagagaaag agtacagccg tggaatggac gaaatgcaat gggtggaaaa actctacaaa
     3241 gattgccgcc gagaaaacaa aggcaaattt gaaatgccgg agtttgccga attttggcaa
     3301 aaaggctatg tgctgttccc ggagggcaaa ccttgggttc gccacgccga tttccgtgaa
     3361 gatccggaat tgcacgcact tggcacaccg tccggcttta ttgaaattta cagcaacaaa
     3421 atcgcctctt tcggctatga cgattgtaaa ggtcacccaa tgtggtttga gaaagccgaa
     3481 cgttcacacg gcggtaaaaa ttccgacaaa ttcccgtact ggttgcaatc ggttcaccct
     3541 gacaaacgct tacactccca gctttgtgaa tcgaaagaac tgcgtgaaac gtacagcgtg
     3601 caagggcgtg aaccgcttta cattaacccg caagatgccg ccaaacacgg cattcaagac
     3661 ggagatttag tgcgagtatt taacgaccgt gggcaagcga ttgtgggagc ggtgctttcc
     3721 gacaacttcc cgacaggcgt ggtgcgtttg caagaggggg cgtggtattc accgcttgac
     3781 gaaagcgttg gggcgattga tacctatggt gacccgaaca caatgaccct agacatcggc
     3841 acctccaagc tggcacaagc ggtttccgct aacacttgct tggtgaacat tgagaaattt
     3901 gtcggcaatg ccccagcccc gaacggcttt aacggtgcga ttgaggtaac cgcttaatgg
     3961 cattactgaa atcggatatt agccgtgaag agcgacaatt tatctacgct tggtttaacg
     4021 caatgctcgc ccgagaactc tccggcgagc agttaaacgc cctacaagcg ggcgaatttg
     4081 acgatttttt tgcatacctc agcgaattgg gttttgccga gcaggttgca aaatttcaag
     4141 cagaattgac cgcttgcaat cggctcgaat ttccccactt agagcttgcc gccgacttcg
     4201 cccaactgtt tttgttggag ggcagtctca gtgcaattcc ttacgcctcc gcctatttaa
     4261 gcggagaagc gttagagcag aacttagcgg agatggacaa gttactgagc gaatttgggc
     4321 tacaagtcaa tcgagaaagc aaagagccga gcgatcacct ttgcgtttat ctcacccttt
     4381 tcgaccgctt acttgccgaa aaaacggtgg aagtgcaaca gcaattcttg caaacccaac
     4441 tgatgagctg gctccctgcg tggttcgcca aagccaaaac cgtcaaaacc aacaccggcg
     4501 tttattctgc gttgttaagg ttgtttgaag aggtattgct gaaggaacaa agataaagtt
     4561 attcatttga gaatgatttg cattgattga atttaaaaag gaagttaaaa tttcaacttc
     4621 cttttttatt ggctggattt atccacatta ttacaagcgg ttatttttat aaaaaaattt
     4681 acaaaggaga cattaatgca aaataataaa accacctacc taaattggta cgatttatgc
     4741 gtgctaaccc tgatcctgtt tggtgaggca atttatacct caacccagca atatttcatc
     4801 accaccgaaa tgcaaggtaa ttttgaagaa aatttaacct tttcaaatga acaaaattat
     4861 tgggcattac tgactcaact tgcattgttg cttattgcaa tgggctatct aaaatggcgg
     4921 aattttgatt tcagccgttg ggtgattcgc ccatcttggc gggctttttt tagcggtatc
     4981 gggttgttta tcttgctctc gttagcgatg gatctctatt ttgaaacatt atatggcgtt
     5041 tacaacctag tgtatccgga gccatttttg gcagtattga gagaagtgaa tatttctact
     5101 gtgctgtatg cgattttaaa cggcttttat gaagaaatct tttttcttgg tatttgcttg
     5161 gcggttaaac ccgaatatct aaaatgggcg gtaatttatt cactcattat tcgggtgagt
     5221 tttcatactt atcaaggaat ggaaagtgca ttagggctgg gaatttggct cggtttaatt
     5281 atttatttgc tctactcacg ctcaaaacag aaaaacctat ttccattttg ggtggcacac
     5341 agtattgcgg atattttggg gttgagtttg ttggcttatt tttaattaaa ctcctcctac
     5401 cagtacatta aaaaacatta tttttaatat ggaaatgtat ttttaatcta taatatgact
     5461 ttaagttatt ttatatagcc aaaagttata tttttgttgt gtgtttgtta aaaggaaacc
     5521 aaaattatga gtattaaaaa attaacccta gccactttga ttttagtcgg tctaaccgct
     5581 tgtggcagca gtgggtcagg tagtagttcc aataaggctg acttagataa gtctaaaatt
     5641 actgtaccaa aagatataaa agacaaagct gataaagcaa aaaaagaggc agaagagcgt
     5701 ttagaaaaag caaaaaaaga ggaagaacgt ttagctaaag aagcgaagaa agcaaaagag
     5761 gatgcagaac gtttagcaaa agaggatgca gaacgtttag caaaagaagc tgaaaaagca
     5821 aaaggagaag cacaacgttt ggcaaaagaa aaagcagaga aagcgaaagc tgaagccatt
     5881 aaactcaagg gaactgatga taaagaatat gcagttatta aagaaatgaa atcatcagac
     5941 aatacacgaa aaggtcatat ttataaccaa ccttattctg ttgtgacggc tagtacgtta
     6001 gtcacattag gagagacgcc aaatgaaaat gatagtcttg ttgaaattaa gggcttaaaa
     6061 acaacagcat taccacaaga gggtaaagca acttatagtg gtaaactatt cgaatttaca
     6121 aatgtagatt caagtgattt aacctataat gttgattttg gtaagcgtaa aggttctggc
     6181 gtggcaaaag gtcaggagac gtctattgaa ttgaaagaag gaagcatcga aaatggagca
     6241 atttcttcta ctgtaacgtc ttcaggggga atattggatg gtaagcaagg cagctataaa
     6301 gtcgaattct ttggaccaaa agcagaagaa attgctggtg aagttgaaat taaaaatatt
     6361 gattcgacag gtctttctat aaaatacgga ttagcaggtt ctcgtggtga aatctctaaa
     6421 taaattttta tgatattcaa tgccgtttaa tcccttaaac ggcattcttt tttactatgc
     6481 ataaaaaata ctttctattt ttacttgttt cgccgttggc aatggcggaa acggttgagt
     6541 ttcagcaaga tcccacagag tttgatagtc ggcaacaagc ggtcaaattt gagcaagaaa
     6601 ttgcaaaaaa agatttaaaa tcaacctctt acttggcgga agataataga cttaaaggta
     6661 ttgaacaaca tattaaccaa gcaattctga gacaagattg ggcgaagcta gaaaacctgt
     6721 taggcgatta tgcaaagcaa gaacaatttg atccgctact tttagactat gctttggcgg
     6781 cattggctta tgctaaaaaa gattatcgct ctgcggcgtt ttattatcag cagttgctga
     6841 aaaaacagcc tgatttaacc taccctcgtt ttgatctagc cctgatttta aaagaggatt
     6901 atcgctacag ggaagcagag caagaatttc agcaactcaa aaccgatgat ttacgcaatg
     6961 cggtgaatgc tgctttggct caaatagagg aggaagatag ctggaagccg gatttttact
     7021 tgcaatatac tcaaaccaac aatgtgaata atgcttcttc gtcgccaacg gtaaatgtaa
     7081 acgggcggat ttttattaaa gaatcagaca gcttgccgca gtcggcaaaa ggcgtaagat
     7141 atggcgttgg cttgagtaaa atgcgaaata tcggcggtaa tcattttgtg ggagcggatc
     7201 ttggctataa cggcgtttat tactggaata accacgatta tagcgaacag tcggtctcac
     7261 taacgccaaa atatagctac agaacggcaa cttatcgtat cggggtttcg ccctttattg
     7321 agcagaattg gctaggtagc tcgcggtata actatcaatt tggcagcagt atcaacgcag
     7381 ttaaactttt tgaacgtggg ctgatttccg gctcattcag ccgtctgcaa aaacgttata
     7441 ttgaaaagca tactgctgac cgttacaacg gctatcgcaa ccaactcacg ctaggcacgc
     7501 aatggcaagc ggtcaaaaat ggacgatttt ttgcaaatat tatcggcagc cgtgaaattg
     7561 ctcgagaaaa agcccaatct tccaataagt ggctggcaac ctttggcgta atttaccaaa
     7621 caccaagttg ggcaagttcg gtaagtgtcg ggtatggcaa gcgttatttt gctgataaac
     7681 attatctgtt tggctataaa cgccaagata aggaatatca agcgaatgtg gcggtgtgga
     7741 accgaaattg gcactggcac gggattgtgc cgaaattaaa tttccgctat caaaaaatcg
     7801 acagcaatat tgccgatttc tactcgcgta gcaataaaaa actctttatg acgttagaga
     7861 agctgtttta aagctgtgta tgaatatcgg ggcgaaaatt ttcgcccctg ttcaatatta
     7921 gctaattgaa tttgtggtaa tttaactgca accattgtag cccaattacc gcaattacat
     7981 tatcaatcgt gccgtcttcc acccattgat atgcctgttc gcggctaacc acgtgaacca
     8041 aaatgtcttc gttttcttct tccagtaaac cgtgtacctc gccggatttt actttgctgc
     8101 tgtcaattaa gccgagaaac aggtgcaagc gttccagttg tccaccgggg ctgtcccata
     8161 cgcttaaggc gtgttgcact tgtgttactt ccaagccggc ttcttctttg gcttcacgca
     8221 ttgcaacttc tgccggctct tcgttgcctt tatctaccat accggcaacc aattccagca
     8281 accaaggcga tttcttctgc cctgcatcgt aagcaccgat acgcacttgc tcaattagca
     8341 ctaccttgtc taagatagga tcgtaagcaa ttaaagctgc cgcttcgcct ttaattaaga
     8401 gttcacgcac cacttcaccg ctcatttcac cggaaaacag tttgtggcgg aaagtgattt
     8461 tttgtagctc aaaatgccct ttatagacgg tttctcggtt tagaatctgt aaatcattgt
     8521 gctgatattg ggttagcttc atattagttc ctagctttta tgtaaacgat cggtgtgtac
     8581 aatatataat gctataatca tcaccaaaat agagagtgcg aataatagtg tatgcaacgc
     8641 attagaatga tcgacaataa tcaatcttac catggcagta atcccgatat agaggaaata
     8701 gcgtaacgga aagtgataat tcgatttgaa atatttcaca atcaacgcaa gaaactcaaa
     8761 atagaggaag aaaatcacaa ttttttccac aatttggaat ttttcactgt cgctaaaaga
     8821 gagttcatag agtgaatagg cttcagcaaa cagcgagtaa gaaagcaatg ctcctgttac
     8881 tagcaaggca atattcataa tccactgaaa ggtttcggaa gcaattttgc caaaactgga
     8941 atggtgttct tctaaagatt ttttaggcat tcgttatcct taattaacat cataaacaag
     9001 tgattggcac tttataggct gaaactgccc gttttgccaa tggtatagca aaggttcaga
     9061 taatagcata ttttgaggtt gttgatagaa gtagcttaaa tagaacggca gttcgctcac
     9121 aaaatgcagc ttgcctttcg gacaatgggc ggaaaagatc tgtttttcta acggtaaatg
     9181 ttttacttcg gacagtttca caatccccac cccttgcgat ttcaatatcg cctctcgcaa
     9241 gcaccagctc aaataaaagc gttcggcgag gttgcttaga atgggggagt ggttggctaa
     9301 taaaacattt tgttcttcag cgtttccgta atggcagatt aaatcgtggt aacgtctgat
     9361 tttttgtggg tgttcaatat caatgccgac cgctaatttt gcaaaagaat acgaaaaaat
     9421 gaccgctatc cattcccctg aatggctgat gttaaagtca atttgctcag aatcgacaaa
     9481 agtgcgaccg cttggggagc gttgcatatc agctaataaa tctaaatcca gatggtgttt
     9541 tttaaacaat tccgtcagca gaaaaaaggc gactcggcgg ctttgccatt tttgcacctg
     9601 tttttcagtt aaaccgccgg gcatttcagg gtaggagaaa tcactcggca gaggtgcttt
     9661 ccgatgaata aacgcaattt caatatttgc aaaattttgc ataaaaatca ccgcttgaag
     9721 gcaagtaaca gtacgccacc agcaactaag ccaatgccaa gccaatcttg tccgcttggg
     9781 cgttcgccta agaaaattac tgcaaaaagg gtaactaaca ccaagctgaa tttatcgatt
     9841 ggagcgactt gggaagcatt acccatttgc aatgctttga aatacgccga ccaagacaat
     9901 cctgttgcca agccggataa gattaaaaac agccagtttt tgctgctcaa gctatctaac
     9961 ggctgccatt ttccgctgta agtgagaaag gcaataagtg caataataat aactaccgtg
    10021 cgaataaaag tggcgaaatc agaatctacg ccttgtaagc caactttggc aaaaatggcg
    10081 gttaatgctg caaaaagtgc agaggctaat gcccaataga gccaatcgtg tgtcataaca
    10141 aaattttaat attttaggtt aatttctaat catatggagc aataaaatgc gagttagttc
    10201 tagtttatca aattttctat ttgatcttcg caaaattttt gg
//
LOCUS       DANLUT010000090        10227 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.091, whole genome shotgun sequence.
ACCESSION   DANLUT010000090 DANLUT010000000
VERSION     DANLUT010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10227
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..629
                     /locus_tag="PXB38_001646"
     CDS             <1..629
                     /locus_tag="PXB38_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353950.1"
                     /translation="QAIQHSVEISRKNNNSNIHIVFPRKSDFESTNLGKIIDQILGAG
                     SAKKLTKGESIGSLDLLLPSRINSSNSSGTILAVYCTSHDMHLIDSNSSADDIIFVSW
                     LPDEANHWENTWHNHGLIIMKGETSLNIPQIPEEIVQSLTNLTAIINLSTGLSHPSDK
                     KHAEQIFKELSQKGYKADEEQIASWAIAHGWNASHLSDLKKLVRRYLS"
     gene            complement(731..1396)
                     /gene="cas4"
                     /locus_tag="PXB38_001647"
     CDS             complement(731..1396)
                     /gene="cas4"
                     /locus_tag="PXB38_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL5353951.1"
                     /translation="MDDLQNSTEILPLVQPKFGYDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQVLHERVDSGEPETRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKPEPMDEIQLCAQALCLEEMTGQTINEGALWYMQTRHRLPITF
                     STELRTKTLATISEVRSLLNSGTTPLPKYSKRCKACSLIDLCQPQLLDRDRSERYVEE
                     IFK"
     gene            complement(1396..2259)
                     /gene="cas7c"
                     /locus_tag="PXB38_001648"
     CDS             complement(1396..2259)
                     /gene="cas7c"
                     /locus_tag="PXB38_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL5353952.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYRISVQAE
                     GLTGVTVEELL"
     gene            complement(2269..4053)
                     /gene="cas8c"
                     /locus_tag="PXB38_001649"
     CDS             complement(2269..4053)
                     /gene="cas8c"
                     /locus_tag="PXB38_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL5353953.1"
                     /translation="MILSALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDS
                     KGNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATA
                     KDQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDA
                     NVVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGV
                     FGGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGD
                     ASTVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPEL
                     SENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCAWKTPPSIWRL
                     LLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMK
                     AVLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQTQALGELNAGIADRYY
                     GSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSID
                     EQGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(4050..4727)
                     /gene="cas5c"
                     /locus_tag="PXB38_001650"
     CDS             complement(4050..4727)
                     /gene="cas5c"
                     /locus_tag="PXB38_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL5353954.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4965..6716)
                     /locus_tag="PXB38_001651"
     CDS             complement(4965..6716)
                     /locus_tag="PXB38_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HDL5353955.1"
                     /translation="MANETLNFKDNARLGRVVTVDTSRVLISVEEHQQMTSIAVGNLI
                     AIQGRTASEYLIGIIERVTRSISEKLLLEEISNEGEIPLGESQDDFIKAVLIGTYKAV
                     DGSLSNTFKRGADCFPQIDRDCFHISGSNLQLFMNLLSANVKENERLTLGHFMADETA
                     VAIANGDKFFQRHAAILGSTGSGKSWSVALILERAAALKAANLIVFDMHGEYSTLCEG
                     KNAIAQQYRIAGPGDLDGSDERSLFIPYWLLNREEMLALILDRSDDNAPNQAARFTEH
                     VRALKEQTLNKEERNDVLETFTVDSPIPYSIELLLARLDKDNSEMVPKEGGSGTKQGP
                     WYSKLSRFMGRMKAKIDDRRCGFMFQPPVECNSYGWLENMLSKLFSASESEKGIKIID
                     FSEVPSDVLPIVTGVLARLLYNIQFWMDKDSRHPLTIICDEAHLYLPVRDSAEAAEKR
                     ALEAFERIAKEGRKYGVSLLVVSQRPSDVSRTILSQCNNFLVLRLTNDQDQSVVKRLL
                     PESMVGITDILPLLDLGEALLLGDSILLPTRIKLAKPHIAPESATRQFWSDWANQEPK
                     PNAVSNAVEALRRQVRS"
     gene            complement(6706..7779)
                     /locus_tag="PXB38_001652"
     CDS             complement(6706..7779)
                     /locus_tag="PXB38_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIR2 family protein"
                     /protein_id="HDL5353956.1"
                     /translation="MEGKRKMREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLP
                     GMGALADRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKIT
                     AEYVLSEEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYEN
                     WGIDSMMVGRYWGKHNPDLSRKLQIRDIRVKGKCPKLVYRDHIKIFKPHGSLDWFMAG
                     DVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANEAIDSASSILCIGYGFND
                     DHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKALIFDGDKAGTRVVSKQEE
                     TFIPNVHWWDVEFFVKEILENGK"
     gene            complement(7892..10180)
                     /locus_tag="PXB38_001653"
     CDS             complement(7892..10180)
                     /locus_tag="PXB38_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL5353957.1"
                     /translation="MEEHTIQSLYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNSPNLTALHQQFNQFI
                     AQFRERITIQTPNTQEAQRKAEVNRLRSEILDYAVSQVKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGEEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
BASE COUNT         2879 a         2305 c         1931 g         3112 t
ORIGIN      
        1 ttcaagcaat tcaacattct gttgaaatat ctcggaaaaa taacaattct aacattcata
       61 ttgtttttcc cagaaagtct gactttgaaa gtactaatct tgggaaaata attgatcaaa
      121 tattaggagc aggatcagct aaaaaattaa ctaaaggtga atctataggt tccttagatt
      181 tgctacttcc atcaagaatt aattcttcaa actcatctgg tacaatcttg gctgtttact
      241 gtacatctca tgatatgcat ttgatcgact caaactcttc tgctgatgac attatattcg
      301 tatcctggtt gccagatgaa gctaatcatt gggagaatac ttggcataat catggactta
      361 ttatcatgaa aggggaaact tctcttaata ttccacaaat accggaagaa attgtacagt
      421 cattgactaa tttaactgct attatcaatc tatctactgg gctatcgcac ccatcagata
      481 aaaagcatgc tgaacaaatc ttcaaagagc tatctcaaaa gggatataaa gcggatgaag
      541 aacaaatagc tagctgggca atagctcatg gatggaatgc tagccattta agcgatctta
      601 agaaactagt tcgtagatac ctttcttaat tcccataaca actacatttt tctactattt
      661 ctatacttta acacttcaat tttagatggc ttttagtatt taaaagccat ctatttccta
      721 tgtttataaa ttatttaaag atttcttcca catacctttc cgacctatcc ctatccaaca
      781 actgcggttg gcagaggtca atgagtgagc aggctttgca gcgtttgcta tatttgggga
      841 gtggtgttgt tccgctgttt aaaagtgacc gcacttcgga aatggtggcg agggttttgg
      901 tgcgtagttc ggtggagaaa gtgatcggca agcggtggcg ggtttgcata taccacaatg
      961 ctccctcgtt aatagtttgc cccgtcattt cttccaaaca taacgcttgg gcgcaaagtt
     1021 ggatttcgtc catcggttca ggttttggct tgccacgttt atattccacc ggttttagtt
     1081 cgcctgtttt cagatctcgc tcgaccaaat ccaaaatacc actgatgcct aatttttccg
     1141 ctgcaacgtg aaccgttcgc tcaaagcgaa tgccctttcg ggtttctggc tcaccactat
     1201 ctacccgctc gtgcaacact tgaccttgtg cggtgagata gttttctgcc cacacctgtt
     1261 cgttatgaat taacgcacat tgacgtgggc agaaggcgta gtgttgcaaa gcggaaagcg
     1321 aaatcgaccg cttgtcatag ccaaattttg gctgaacaag cggtaaaatt tccgtagaat
     1381 tttgcaaatc gtccattaca gcaattcttc aacggttaca cccgttaagc cttcagcttg
     1441 tacgctgatg cggtagtcgt catagtcttt cgctggcgtg tctttttcac cgttgattcg
     1501 ctcaactttt accgagtcaa acagtttgtg tgcaggttgg ttgcctaatt cgctgtcgtg
     1561 tttaaatacg atcagtttac gagctgccat ttcgcctcgt gcggcagaac ggtcgtgttc
     1621 aaacataagt tgcaaggctt gccaaagttt ttgtacatct tcatcagaaa agcccgtttt
     1681 ttcagcgagt ttagctgaaa taaagccgtg aacacgataa agtgcgtaag gcacgatata
     1741 tttacgcccc atagtccgtt ctttttcaag atctttttcg ttggtcactg ccattcgtgt
     1801 gatcgatact tctagcggaa taatcggatc gatagattga gcgaacgcca attgcactgg
     1861 gcctcgcacc tgtccgctgt ttacttcggt agtcattacc gccccaaagg tgcgaatatc
     1921 gaaaaagttt ttgcacatcc aagcggtaat ttctcgggct ttagcttcct cttttggtag
     1981 ttttttcgct tccgattcaa tccctaatgc ttcataagca cgtttgtttt gtaaattcag
     2041 aacgcttttt tctttaacat agatttcgta acccgcctcg ttttcatagc tcatttcaat
     2101 aaaattgcgg attttgcgtt ttaggcaaac atcggtgact aaacctttac tggtttcagg
     2161 atcaaggcgt ggcatatttc ctgcatctgg atcaccattt gggttaccgt tggttacatc
     2221 aaagaaaaaa acaaattcat agcggttttg aatagacata gtgtttcctt agttttcaat
     2281 agactcagtg gtttcttttt tagcgaaata gctttgtttt tggtggtaat agccaatcgc
     2341 aaagcggcct tgctcatcga tacttaaatg gcgagggaaa ttttccggca agctggcaat
     2401 aatctcacct aaatccttat ccagattaac tgccattccg cccttatctt ttctcaagcg
     2461 agataaatga tgttttgctc cgcttaataa gcgagggaat accgaaaatg gcacggcaga
     2521 ggctgaacca taataacggt cggcaatgcc ggcatttaat tcacctaacg cttgggtttg
     2581 gattctttct aataccgcaa ataacctgcc gagcaagtaa gcttggttat cgctttcttt
     2641 atttaagctc ataggaactc cttctttaat aaaacctttt ctaaattttc gttgtaagac
     2701 cgctttcatc aatgctactc gcaagccgtt aatatctccg tctgctcgga ttcgagtcac
     2761 cagctgagaa agcaagctca tcgggtataa atgaccgcta ataaccgccc gagccatttc
     2821 gcccgccaag acaggagaaa tattctcact tttacctaat gaagcagttt gtaataaaag
     2881 tcgccaaatg gagggaggcg ttttccatgc acaaggctca agggcaagat cttgccaatg
     2941 ctcgctaaga ttttttgcca gttgcccaaa ggtggtatcc agccaaaaac gcaccgaaat
     3001 gcgagctgca ttcggagcaa gccccaacac ataaaaacgg gtgttttcag ataattctgg
     3061 ggaaatttct gcaagcggtc gtcctttgct gattttttgc aattcttcaa agattttttg
     3121 gttttcttgc tcatcatctg gaggcgtcat taaagcagca aaaaagcctt cagcagcttc
     3181 agcttgggtg gtattgtctg cttctgccca aaagacagtg ctggcatcac caatggttaa
     3241 acgatgtttc tcggtgcgta acaaataatt taaagcagta gtgtaggcaa aggcggcttg
     3301 ttcagaaaca ggggcattac taccttgttc cttgccaaat gaagtgaagg attctttatt
     3361 aaaagagatg attgaaccac cggaactttg cccaccaaat acccctttaa taggaggatg
     3421 agttcgttga attggcgata atttgcctga aattaagcat aaaccttttt cagcattatc
     3481 actttgattt atcaacaaac ttgtccaaag ggtttgtgca gcttctcgct gatgaatata
     3541 accgcttgtg ccgactaatt taaacacgac attcgcatca agaatttctc ttgggcagat
     3601 tgattcggca aaatgtgtgg gttgccattg ttgcaggaaa tttcttatcg ccattaaacc
     3661 ttcatcattg gaatctgcaa gcaaatccaa atggtactgt ttaaatgcct caaaggtttt
     3721 ctcggcgaaa ttgatgggtt gatctttggc ggtggcttta tcaggattac tttcaatgcc
     3781 tagcacataa gcggttttat cccacagaaa attgggctta atgccagacg tgcgtttttc
     3841 agggcgaggt acgctcatca atttcggttt tggtttctta tcttctgtta aatttgagat
     3901 cacattgacc aaatttccct ttgaatctaa ttctagtacc caaccgattt tttcttcact
     3961 gaaaccataa gaaggcactt tagcttcgcc tgttaagcga tcttcttgtg ctgcaaggcg
     4021 gtaataatag cgagttaagg cggagagaat catgatttga cctcctctgc ataaaatggt
     4081 ggcacatcaa tcacgccatt tttcatttcc gcacggaaga aacgaggttg attaccgtgc
     4141 tcaaaatcaa tgtcgtgcaa catccagcct aaatcccgat ctcgctcatt ttctgccaaa
     4201 aaacactcag gtaacggttc atcgtcatca atcaaggcaa aatttgcggc aaattcacgc
     4261 acgcccatac aaggctgctg gaaacattgc ccctttttcg cacggcgttt aaacatttca
     4321 atatgcttgg tgacagtttc cgcctcgcct gccattttgg tcagcactgc gtgagcttcg
     4381 atcacataac cgacattttt cagcacagta gcagcacgtt gttggcggtc gtcttcaatc
     4441 acagtatata aatccgccac tgttttacgc ttcattgcac cactgatttt actggcagaa
     4501 attttactgc ctaactcatt acggcgaaca gactcaaatt gaatcggttg taatacataa
     4561 attttatcaa tcacccagcg aattgccggc ttccaatgca ccgcagccaa aatcccccgt
     4621 gccgcagacg gcgtaatcac atcataagac acccgttcta ccttcatttc aggacgggta
     4681 aaacaagcat aatcacccca aatatggagc ctgattttgt ttggcataat agaatgctcc
     4741 ttttaattat gtaacacaca cctccccgaa gggaggtgaa atttctttag cttataactg
     4801 ctttggtttc aacccacgca ctcggtaaaa tgcgaaaaat tttatggctt attatattaa
     4861 gcggtcggat ttacttagaa agttgcaaag ttatttgagt atttaaccgc ttgtatttca
     4921 aaatggtcag aaaaataaca gcactttcta ggtacaatat ttttctaaga acgaacttgt
     4981 ctccgcaatg cctctactgc gtttgacaca gcatttggtt tgggctcctg gtttgcccaa
     5041 tcagaccaga attggcgtgt agcactttct ggggctatat gcggtttagc aagtttgatt
     5101 cgtgtaggta atagaatcga atcgcctagc aataacgctt cgcctaaatc aagtaacggc
     5161 aatatatcag taattccaac catagattcc ggcaataaac gctttacaac actttgatct
     5221 tgatcatttg ttaatcgtaa aaccaagaaa ttattacatt gactcaaaat tgttcggctt
     5281 acatctgaag gacgttggct aacgaccaac aaagacacgc catattttct accttctttc
     5341 gcaatccgct caaaggcttc caatgcgcgt ttttccgctg cttccgctga atctcgaaca
     5401 gggagatata aatgtgcttc atcgcaaata atcgttagtg gatggcggga atctttatcc
     5461 atccaaaatt gaatgttgta taaaaggcgg gcaagaactc ccgtaacaat cggtaaaaca
     5521 tccgacggga cttccgaaaa atcaataatt tttatccctt tttcgctctc agaagcagaa
     5581 aacagttttg acaacatatt ttccagccac ccatagctgt tgcactctac tggcggttgg
     5641 aacataaaac cgcaacgtct gtcatctatt ttggctttca tccttcccat aaacctagac
     5701 aacttactat accaaggacc ttgctttgtt cctgaacctc cctctttagg taccatctca
     5761 gaattatctt tatctaaacg agctaacaat aattcaatag aatacggaat tggcgaatca
     5821 acagtaaacg tttccaaaac atcatttctt tcttccttat tcaatgtttg ctcttttaat
     5881 gcgcgaacat gctcagtaaa acgcgccgcc tgattcggag cattatcatc actgcgatct
     5941 aaaattaaag ccagcatttc ttcccgattg agcagccaat agggaataaa taaactgcgt
     6001 tcatctgaac catccaaatc tcccggtcca gcaatacggt attgctgagc gatagcgttt
     6061 ttaccttcgc atagagtgct atattcaccg tgcatatcga atacaataag attagcagct
     6121 tttaaagctg ctgcacgttc caatattaat gcaactgacc agcttttacc ggaaccagta
     6181 ctacccaaaa tagcagcgtg ccgttgaaag aatttatctc cgtttgctat agctacagcc
     6241 gtttcatcag ccataaaatg acctaaagtc agccgttcat tttcttttac gttagcggac
     6301 aaaagattca taaataattg cagattgctg ccactaatat gaaagcaatc tctatcaatt
     6361 tgcggaaaac aatccgctcc ccgcttaaaa gtgttgctca aactaccatc aacagcttta
     6421 taagtaccga ttaatactgc cttgataaag tcatcctgac tttcacccag aggaatttca
     6481 ccctcattag atatttcttc tagcagcaat ttttcactga tagaacgcgt tacccgttcg
     6541 ataatgccga taaggtactc actagccgtt ctgccttgaa tcgcaatcag attacccaca
     6601 gcaatactag tcatttgttg atgctcttca acagaaatca atacacggct ggtatctact
     6661 gttacaaccc tgcccaaacg ggcattgtct ttaaaattca atgtttcatt tgccattctc
     6721 taaaatctct tttacaaaaa actcaacgtc ccaccaatga acattaggaa taaaagtttc
     6781 ttcttgcttg ctaaccaccc ttgttccagc cttatctcca tcaaaaatca gagccttaca
     6841 attcggagct tccttcacca cgtttctggc attttctgaa agtcctcttg tcagaagtag
     6901 tgttttcaca ccacttttaa ttttgcctgt caaatgtgtt tgaaggtggt catcattaaa
     6961 accatagccg atacataaaa ttgaagaagc agaatcaata gcttcatttg ctttttctcg
     7021 atgagcatca aatggttgtc catagccttt tttatacttc ccaacaccag gcgtaataat
     7081 taaaggctct tccactttac ctatacaact tgtcattgga acgtctccag ccataaacca
     7141 atctaaacta ccatgcggtt taaagatttt gatatgatct cgataaacca attttggaca
     7201 tttacctttt actctaatgt ctcttatctg caatttccta ctcaaatcag gattatgttt
     7261 tccccaataa cgaccgacca tcattgaatc tattccccaa ttttcatact ctgccgcaaa
     7321 ctcaatcaat ctatcataat tagtagtaat tacacgggca attttaggat ttgaagctga
     7381 aatatgggga agcaaataag aaaatttgag cttctgattc tcagcaatac atttgtttat
     7441 cgctttttgc tcttcggaga gtacatactc ggctgttatt ttaataatag cggcttctat
     7501 cgtctcattt gcttgatgct tcaacaatgc accttccaag ccttcagaat ccagacaatc
     7561 agaaatggta ttccatgtta ccttatctat atcatcaaga cattcaggca ttcgttcttt
     7621 taatctatca gctaatgctc ccattcccgg caaaccttcg gcacaggaca aacccgaacc
     7681 gacaataatg accaaattgt cagtaaaaat agtttgcaac cattttttta attcatcttc
     7741 atctaataat ggttctctca ttttacgttt cccttccaaa tatctattct tacaaactag
     7801 ctgtttacta cgagacgtca taggctattt ggtatattaa agtatatcta tgcaaaatta
     7861 aacttataaa gaagttaaaa taaacattca tctataaaac caatttctcc gactcaagaa
     7921 aatccacatt ctcccaactc aaccccgcca cttcatcata caaatccatt ccaattaagc
     7981 agtaaaactg tttgccgaag ttggtttcat taatggtttc aactctgcca gcgttataga
     8041 gttcggctaa tgctttttcc ggtacttgca cagtgtaagg ctggagtttt cttaaaatac
     8101 cgcctacttg atccgcatag cgtaaacggt caataaggtt ttcggcttct tggtcgaaag
     8161 ggataatcac cggaattaaa tggcttgtga tcattcggaa atcttcagct attttttgga
     8221 atgggaaatt aaggctttgc ccagcgtcgt gacacgcctt taaaatattt ggcttatcca
     8281 gctcttttcc tttagcctca taaaccgctt ggaaataatg attgattgct ttcggattaa
     8341 gtagatcatc tgcgtgaacc tgaaccgttg aacgcataca gccagaaagt aagcctagct
     8401 ctggtggtgc tttccactgt tcttcaggtt ggaaaaccca aacattgctt tctacagata
     8461 aacgtttccc ctctcggttg caacgccctg ctgcttgagc cactgaatct agtcctgctt
     8521 cagctcgcat aaccagtggg aaatcgacat caacaccggc ttcaattaaa gaagtggcaa
     8581 tcactcggca aggtaggttt tgttttaggc gaagacgaat ttcagtcagc gtttgtgagc
     8641 ggtgtttagc acacattagc gtggtgaggt gataagctcc ctctaactgt ttcgctgaat
     8701 catataacgc tcgggcgtga cggcggttat tcacgattat cagcatttgt gggttatctg
     8761 caagtttgct ttgcaactcc acatctgttt gaataccgat atgctttacc gtagtacgtt
     8821 tcaatttttc aaaaagtgcg gttggattag gggcaatttc tcgcacattt tcaaatcctt
     8881 tataaaaacc gttcgcttga tgaatagcgg gttgtgtcgc tgtgcaaagc actaccgaac
     8941 attgataatt gcgagctaat tcatcaatcg cagccataat tgggcgtaat aaattcaacg
     9001 gtagcatttg ggcttcgtcc aaaataatca cgctgccggc gatgttgtgc aatttgcggc
     9061 aacgtgaaga acggtcggca aacaaacttt caaagaattg cactgcagtt gtaaccacaa
     9121 caggagcatc ccaattttcc gatgccaatt tcagcttatc tcggcttgat ttatcaggta
     9181 ggctatcgtg atcaaaagtg ctgtgatgct ccaatacagc ctcttctccc agctcgccaa
     9241 aagctttacg aaattccgca gcattttgtt caataatgct ggtaaacgga ataacataaa
     9301 taatgcggca taaaccatac tgtttagcat gctcaagggc aaacgccatt gaagtaaagg
     9361 ttttaccacc gcccgttggc acagtcagag aaaacaagcc tgtttcctgt ttcacttgag
     9421 atacggcata atccaaaatc tcactccgca agcggtttac ttccgcttta cgttgtgctt
     9481 cctgcgtatt aggcgtttga atggtaattc gctccctaaa ttgtgcaata aattgattaa
     9541 attgctgatg gagtgcggtt aaattggggg aatttcctcg ttcaagcggt cttttttcga
     9601 gattggcata aaaagcttct gtatcaagaa agtcggcatc gacaaggcaa gaatagagca
     9661 ttcgaataaa aaaggcataa gaaaagaaag gttcgttttt agaaggcttt aacggcggta
     9721 agggcaattt ttcaggcaaa ttaagttctt gctgccaaat agcgtcaagt accggtagat
     9781 ctttatgacc atagccaaat tgctcttgca aacgttgtgt gagtgtagaa cgatttttcc
     9841 cttctccaga accatttgct aacccagcgt ggtgtcctgc aatgcaaaac gccatcattt
     9901 tgcccagagg cccccaacgt tccactgcaa tttttgcacc ggcagtagag tgatttaccc
     9961 gttctccgcc atgtaaacgc ttttggtaac gttcactata tttgcccaaa tcgtgcaata
    10021 gccccgtgca gcgagcaatt tcttgtgaag caaacggcgc agcaaattcg gcggcaagca
    10081 agccaacatt attggcgtgg ctgagtaagg tttgccaatc tgaatgatct gaaagcttcc
    10141 ccgaatgggc atacaaagac tgaatagtat gttcttccat tttatacctt caatatttcc
    10201 ttcctaacac aagcaatact acctcta
//
LOCUS       DANLUT010000091         9720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLUT010000091 DANLUT010000000
VERSION     DANLUT010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            91..1569
                     /gene="fruB"
                     /locus_tag="PXB38_001654"
     CDS             91..1569
                     /gene="fruB"
                     /locus_tag="PXB38_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL5353958.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGKGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SLITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAQGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            1583..2527
                     /gene="fruK"
                     /locus_tag="PXB38_001655"
     CDS             1583..2527
                     /gene="fruK"
                     /locus_tag="PXB38_001655"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL5353959.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVAGLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRATLDDIIKQTDITVISENH"
     gene            2553..4217
                     /locus_tag="PXB38_001656"
     CDS             2553..4217
                     /locus_tag="PXB38_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5353960.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEVPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            4384..4902
                     /locus_tag="PXB38_001657"
     CDS             4384..4902
                     /locus_tag="PXB38_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL5353961.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQHMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5055..5918)
                     /gene="rarD"
                     /locus_tag="PXB38_001658"
     CDS             complement(5055..5918)
                     /gene="rarD"
                     /locus_tag="PXB38_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5353962.1"
                     /translation="MLRGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWLAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            6091..6675
                     /locus_tag="PXB38_001659"
     CDS             6091..6675
                     /locus_tag="PXB38_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL5353963.1"
                     /translation="MKKIFWILLIAVLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            6757..7215
                     /locus_tag="PXB38_001660"
     CDS             6757..7215
                     /locus_tag="PXB38_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5353964.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            7212..8048
                     /locus_tag="PXB38_001661"
     CDS             7212..8048
                     /locus_tag="PXB38_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5353965.1"
                     /translation="MMKSLCKFPSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANRAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     RGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFGGGFGGGFGGSRGSGDSFGGGSSGGGGAGG
                     SW"
     gene            complement(8163..8642)
                     /gene="ispF"
                     /locus_tag="PXB38_001662"
     CDS             complement(8163..8642)
                     /gene="ispF"
                     /locus_tag="PXB38_001662"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL5353966.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(8644..9327)
                     /gene="ispD"
                     /locus_tag="PXB38_001663"
     CDS             complement(8644..9327)
                     /gene="ispD"
                     /locus_tag="PXB38_001663"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL5353967.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(9345..9623)
                     /gene="ftsB"
                     /locus_tag="PXB38_001664"
     CDS             complement(9345..9623)
                     /gene="ftsB"
                     /locus_tag="PXB38_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL5353968.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEIFYRIVPKNK"
BASE COUNT         2925 a         2094 c         2024 g         2677 t
ORIGIN      
        1 tttagttggc tataacggtt tagcaaaata tagagtaaac taaccataac attacagttt
       61 aaaaatcaac tttaaatcca aggagttaaa atgcttaatt tatcggcaaa aaacatccgt
      121 ttaaatggtt cagcaagcaa caaagaagaa gttatccgtt ttgttgccgc cgaattagtc
      181 gccaagggca atgtagcagc cggctatgaa gtcggtatgc ttaatcgtga aacccaaacc
      241 tctacttttt taggtaacgg aattgctatt ccccacggca cgcttgatac ccgtgattta
      301 gtcaaagaaa ccggcgtgca aattatccaa cttccgcaag gcgtggaatg gggcaaaggc
      361 aacactgctt atgtagttat cgggattgcg gctaaatcgg acgaacactt aaccttactc
      421 cgtcaactca ccactgtatt aagtgatgaa gaggctgctg ccacattagc gaaaacgcaa
      481 aatttagatg aatttattgc cgtattaagc ggtaagaaaa accttcctgc cttatctcaa
      541 gagctgattt ctctgaatat cgaatcttca agccttatca ctttatcagc cattaacgcc
      601 gcaaaactac aagagcaagg ctatgtttcc caagcattca tcagcgatgt ggttgccaac
      661 aaagcgttac atttaggcaa taatctattt gtggtggatt ccgcccaagg caaccaagct
      721 aacggtatcg ctattgctcg taatacgcaa ggtcaaaccc tactaactgt ggcagaaacc
      781 gacaatgctc tacagccact attaactcaa ttattaaaac cagaagtaag aagccagttt
      841 gctcatttct ctgcggagca aatgcttggt ttattaaaag gcgaaagcgt agcttcaacc
      901 cctgtaacca atgtcgaagc gagtggcaac caagtggttg gcacattcac cattcgtaac
      961 gacaacggct tacacgcccg cccggctgcg gtgttagtac aaacggtgaa accgttctcc
     1021 tcaaaaatca gcgttgaaaa tttagaccgc aacactgcac cggcaagtgc gaaaagtgca
     1081 atgaaagtag tagcactagg ggcaagccaa gggcatcgtt tacgctttgt ggcagaggga
     1141 gaagacgccc aacaagcgat tgaggcatta caacaagcaa ttattaacgg cttaggcgaa
     1201 agtgtttcat tcgtaccggc ggtggcagat acgattgaaa gcattgctgt ttctgcaatt
     1261 cctgcggaag aaactgcgac tgctgtcgat gccaatacga aagaagcaac ttttgtaatt
     1321 aaaaacgaac acggtttaca cgctcgccca agtgcggtgt tggtgaatga agtgaaaaaa
     1381 ttcaacgcca aaattgaagt gcaaaatgtt gataaaaatt caccgcttgt aagtgccaaa
     1441 agcttaatga aaattgttgc ccttggcgta accaaaggca cgacgctacg ctttgtggca
     1501 agcggtgatg atgccgaagt agcacttgcg gcaatcggtg ctgcgattga agcaggttta
     1561 ggcgaataag cgaggaatca ttatgcgtat tgcaaccgtt accctcaacc ctgcctttga
     1621 tttagtcggc aaacttcaac gtattgaaat cggcgaagtg aacaccgtag aaacccttgg
     1681 tttataccct gccggcaaag gtattaacgt tgctaaagtt ttagctgact taggcacaaa
     1741 actttcggtt accggctttt taggcgaaga aaatcaaggc gatttcgtaa atgcctttaa
     1801 acacaatgat ttggctgatg aattttaccg tattaacggt aaaacccgca ttaatgtcaa
     1861 aatcactgaa accgaggctg atgtaactga tctgaacttt ctcggctttg aaatttcgga
     1921 aagcgattgg gaaaaattcg tcacattatc tcatcagtgg gaaagcaaat ttgacttagt
     1981 tgcagtgtgt ggatctctcc ctcgtggcgt aacgccggaa aaatttgctt cttggttgga
     2041 atctttacac cgccaaggct taaaagtggt gttagatacc agcaatgcgg ctctcaccgc
     2101 cggcttaacc gctcaccctt ggttagtaaa accaaaccgc cgagagctgg aagtgctggt
     2161 cgggcattca ctcaactcaa tcgaagagat tattagtgca gctaaacaat tacgttcccg
     2221 tggtattgaa aatgtaatta tatcaatggg cgaacaaggc tctctttggc taaatcacga
     2281 aggcgtgtta caagcccgcc caccacgttg cgaaaatgta gttagcactg taggtgctgg
     2341 tgattcaatg gttgccggct tgatctacgg cttatcccaa ggttggagca aagagcagac
     2401 cttgcgtttt gcctcagcta cttctgctct agctgttgtt caaagtaacg ttgggattgc
     2461 agaccgtgcg acgttagacg atattattaa acaaaccgac attaccgtga tttcagaaaa
     2521 tcattaaacc tcaatcaaag gaacaaacca atatgaatat ttcttttgta tttcctcaaa
     2581 cactaggcaa cgcacgccgt ttcttagtga atgaaatgtt atctgccgct gccaagcaac
     2641 aaggacacaa tgttgtggcg gcaaaccaag ctgattttgt ggtgttattc gataacgcaa
     2701 ttccacaaga agctgccggc aagcaagggg caattttgga cttagaacaa gcctttgctc
     2761 aacctgaagc cagtctcaaa caagcggtcg aaaatgcaca aacttttgca aatgctaccg
     2821 caaccactgc ggtttcagcg gtttcatctg gtgtgaaaaa tatcgttgct gttaccgctt
     2881 gcccaactgg cgtggctcat acttttatgt ctgcggaagc aatcgaaaat tatgccaaag
     2941 cacagggttg gaacatcaag gttgaaaccc gtggtcaagt aggagcagga aatccaattt
     3001 ccgccgaaga agtcgcagcg gcagatttag tctttgtagc tgccgatatt gatgtcgatt
     3061 tggaaaaatt caaaggcaag ccgatgtatc gcacctcaac cggtttagca ttgaagaaaa
     3121 ccactcaaga atttgaaaaa gcctttgctc aagcgaaaat ttacgaaggt ggtgtggcaa
     3181 aagcggataa tgctgaagtt ccaacttctg agaaaaaagg gttatataaa cacttgatga
     3241 ccggtgtatc acatatgtta ccgctggtgg tagcaggtgg cttgctcatc gctatttcct
     3301 ttatgttcgg aattgaagcc tttaaagatg aaaccatcgc aggcggcttg ccgaaagcct
     3361 taatggatat tggtggcggt gcggcattcc acttaatgat tgcggtattc gcaggctatg
     3421 tagcgttctc aattgcagac cgtccggggt tagctgtcgg ccttatcggc ggtatgcttg
     3481 ctaccaccgc aggagcaggg attttaggtg gtatcgtagc cggtttctta gccggttata
     3541 ccgtaaaatt cttaaatggt gcaattcagc taccggcaag tttaacctca cttaaaccta
     3601 ttttgatttt accactctta ggctcagcga ttgtcggctt actgatgatt tatgtcatca
     3661 acccaccggt gaaagcatta atggatgcct tagtggaatg gttaaacaca atggggcaaa
     3721 ccaatgcaat tattttaggt attattctcg gtgcgatgat gtgtaccgat atgggtggtc
     3781 cggtgaataa agcggcttat acctttggtg tgggtttaat tgcttcacaa caatatatgc
     3841 caatggcagc ggtgatggcg gcaggtatgg ttccaccaat tggtatggcg attgcgaccc
     3901 tgattgctcg tagcaaattc aacaccaacc aacgtgatgc aggtaaagct tcattcgtgt
     3961 taggtttatg ctttatttca gaaggggcat taccgttcgt ggcggcagac cctgtgcgtg
     4021 taattgccag ctcaatctta ggcggtgcaa ccgccggtgc aatttcaatg gcactaggca
     4081 ttaccctaca agccccacac ggcggtttat tcgtgattcc attcgtttca caaccgttaa
     4141 tgtacttagc tgctattgcc atcggctcat tagtcaccgg cgtagtctat gccgctatca
     4201 aacaaaaagc agaataaagc acaaacacaa atacaaacaa aaacggagcg aaacgctccg
     4261 tttttatatc atattggtac ttactgaatt ctatttcatc gaaatatcaa gtctaaaata
     4321 ttatttttgc gatcgagatc gaaaaaatca ttttcagcac tttacgaata atatcaactc
     4381 gttatgattt tgctacgagg agatactatg cagtttattg aatttaccga tcctgatagt
     4441 ggaatttctt atcaatacag tgaatttact attgctaatg tcgcatttat cattaatttc
     4501 tgctcagatg ccgatgttat atcgactttg tccgcattag gcaaagacat cacaaactat
     4561 ataaacacct attcctgttg cacaatcaaa tttatggcga aagagcatct agaaaatagc
     4621 ggttctaata ttgacattta tgcccccgca gcgaatcatc agttcaaacg taaagaaata
     4681 attgctttac aagaaaccct tgagcgttta ttatttgagc attatgtacg ttttacacca
     4741 gaaagctatc tcttcattgc cgagagagat tcacttaacc gaatgtatca gcatatgtgt
     4801 gtgccacgat gtgattttat gcaatctttc caagtggttt atcccttggg cgttaatcaa
     4861 gattgtttca ttttaattac gccaaaagga aatctaaaat gaatcaacaa cgtccagttt
     4921 ccgttcgttt aaagcaagaa ggcttaatcg cttttaagca agcctatcag cgagcaaaaa
     4981 aagcaggtct attgaaaccg gtcaaataat ctttaaaccg cttgctctac aagcgattta
     5041 tttttcctta attatcacac cttgctacga aaactatccc aactcaataa tccaatcgaa
     5101 accagcaaac agaccatcaa aatataggaa ttggcatcga gtttttcgcc gatggcaaaa
     5161 gaaatcagca acatcaccaa cggttcaaca tagcccagta aacctaatac attaatcggt
     5221 aataaattgc tcgagaggat ataaagaata aaagcactgc cacttaccag ccccagcaat
     5281 ccgaggtaga aataaatttg cggattttct gccactattg gcgtcatttc cacttggctg
     5341 agataataaa gtgcaacggg taataccagt aacaactcca caaaaaaagt agctaacgtg
     5401 ttgatttgaa aataacggcg aagggtaata taaagcggat aacccaaccc agctaaccaa
     5461 gtcgcccacg aaatcgtgct gttaaaaaac aaactactgc caacaccgat gactgcgaaa
     5521 agtagagaaa gccatttcag gcgggtaaaa tgttctttaa acaccatttt tcctagagcc
     5581 accgccacaa tcggtaaaag caagtaacca aacgacacct gcaacgcctg cccgtgatta
     5641 ggagcccata aaaacagcca aagctgcacg ccggtgttga gagcaaggag caaaatgacc
     5701 aatacaagcg gtggattttg tcgaattttt tgcaaaagat ccgcaaaagc cgattgctgt
     5761 ttaaacaata taatcgccag caaaataaac ggaatgacta ccactatccg aaagccgaac
     5821 atcgcttctc cttctaacgg gcgaagtaat atcgcaaaat agtaaactgc tccaaacagc
     5881 acattggctg caagcgaagc taaaattcct ctgagcattt ggctttcctc ttatctacaa
     5941 tcaaacaaca agcggtcgac tttgaacaaa aatttacaaa tcttatctac gccccatagt
     6001 atgaaaaaat ttgtaagtac gctagctata tccgcttttt cccgatacaa tgcacccaat
     6061 ttttcactct tttatttata ggatttcata atgaaaaaga ttttttggat tttactgatc
     6121 gccgtgcttg cagttggcgg ttattcttta acaaaataca acgatttaat gcgtgcagaa
     6181 gaagacatca actccgtatg ggggaatgtt gaatctgctt accaacgccg agcggattta
     6241 attccaaact tagtgaatac cgtaaaaggt caggctaact ttgagaaaga aaccttaaca
     6301 tctgtaattg aagctcgtgc aaaagcgact gcggtaacta ttgacccaag caatgccacc
     6361 gaagagcaaa tggctaaatt ccaagaagcc caacaaggtg taaactctgc cctttcacgt
     6421 ttattggttt ccgttgagaa ataccctgaa ttaaaagctc acgaagcgtt tttaaatctg
     6481 caagctcaat tagaaggcac ggaaaaccgc attaacgttg aacgcaataa ctttaacgaa
     6541 aaagtgaaag agtacaacaa acaagtgcgt gaattcccga ctaaattagc ggcaatgatt
     6601 atgggcttta aagcaaaacc gcaatttaaa tctgaagcag gttctgataa agcaccaacc
     6661 gtaaacttca actaatttta gttttaattt attcatatta aaagcaataa gctctttcaa
     6721 attcggtgct tattgctttc tttttaaggg gaacaaatgg gattattttc ttttctctcc
     6781 aacaaattac cgatagatac gcaacgcatt gaacaagcaa ttgccgattt agagcaaaaa
     6841 acctctgccg aattgcgtgt ggtggtggaa cgaaaagcca aaatcggcaa aaccgacaac
     6901 gccgctatgt tacgagcaag tgagcttttc gatgaattaa aaatgcgtga aacggctgaa
     6961 cataacggtg tgttgatcta cctttcattc aagcctcact acgctgcgat tattggcgat
     7021 gaaggcattc atcaaaaagt cgataacgat ttttggcaaa aaatctatgc cacaatgtgt
     7081 ttggactgcc aacaaggcga ttacacccaa gccatttgtg atgcaatcaa aatggtggaa
     7141 gctccgctcg ctcaccattt cccttatcag gctgatgata aaaacgagct ttcaaacgag
     7201 gtggtagtca aatgatgaaa tccctttgca aatttccatc tattttcaac cgcttgttat
     7261 tggtgtgctt ggctctgttt agcctaaatg ccacagcggt gacctaccca gagccgccta
     7321 atccgtttta ttatattacg gactacacca aaaacacctt gagccaacaa gaatggcgga
     7381 cattagaaga tgccttaatt gctaaccgtg ccaagacaag ttcgcaaatt gccgtggtga
     7441 ttattccaag cacggaaggc gaggcagttt caacctatgc tcataccctg tttaacaaat
     7501 ggggaatcgg acggagcaaa aataacgaga acaatggtat attgttatta attgccaaaa
     7561 atgatcgcaa actctttatt gccaccggac gtgggcttga aggagcgtta cctgatgcga
     7621 ttgcatcgag cattatccgc aatgacatca cgccattctt caaacaagag caatatgcag
     7681 ccggtatcgc ccgtggctta tccgccatta tggcagccat taacggggaa tatgcccctt
     7741 atgcaagtta tggcgaagaa atgcaagaat ttgatgacat agacggctta ctctttttct
     7801 tgtttgccgg cattgtgatt ttcctaattt tccgcccacg aggaaacagt acctatatta
     7861 gtcccagctc aatggatcaa ctaggacaaa tactaagaga aagccaacgc agaggtgggg
     7921 gctttggcgg tggtctcgga ggtggatttg gcggaggctt cggtggtggt tttggcggaa
     7981 gcagaggcag tggcgacagc ttcggtggtg gttcatcagg cggtggaggc gctggaggaa
     8041 gctggtagtt tccgcccaat ttaaaacaat acaagcggtc atatttctca aaaaaattgc
     8101 gtatttttcg ctaaacgcac aaaacgctaa tgaaaataag accgcttcct cacttctcta
     8161 agctatgccc tttttagtaa caatgctacg gcttcacaag ctatgccttc acctcgcccg
     8221 gtaaacccta atttttctgt tgtagtggct tttacattca cttgtgaaat atcgcattgt
     8281 agatcgtctg cgatcacctg tctcatttta tcaatatgcg gtcgcatctt cggagcttga
     8341 gcaataatgg ttacatcgac gttaccgact tgatagccct gttcttgcac ttgtcggtaa
     8401 gcttcaatca acaaaccacg actatcggca tttttgtatt gcatatcagt atcagggaat
     8461 aatttgccaa tatcacctaa agctgctgcg ccaagcaacg catctgttaa agcgtgcagc
     8521 gctacatctc cgtcactatg cgcaatgaag cctgtatgat aaggcacttc aaccccagca
     8581 atcatcagtg gtctatcttc gccaaaagcg tgaacatcaa aaccgtgtcc aatacgtatc
     8641 attttagttc tccaaattat gtgtaaggta aaattccgct aaggctaaat cttcagggcg
     8701 agtgattttg atattatcac ttctacctga aaccaattgt ggctggtagc ctgcaagctc
     8761 cattgcagat gcttcgtctg ttacctgaag cttattggca aaagcagagg ataatgcttg
     8821 ttttaatgct tgagcaggaa aaaattgtgg ggttaaagcg tgccataagg ttgagcgatc
     8881 ttctgtgtgt gcgattttcg tgccgtttgc tcttttcatc gtatctaccg ctggaatggc
     8941 gagaatgcca ccttgcggat cgttaatttg caaaagttta tctaaatctg accgcttgag
     9001 gcaagggcga gctgcatcgt gaactaatgc ccaagcattt tcagtgttga tttcctgtaa
     9061 ggcatttagc actgaatctg ctctcgtttc tcctccaaaa acaagttgga tcttagggga
     9121 ttttaggagt tccaatgtgg aataaaaagg gtcttttctt gccaccgcta caatcacttt
     9181 ttcaacatga gggtgttcaa gaaaaataga cactgtatgc tctaagatag tcttaccctt
     9241 taattgtaaa tattgttttg gtttttctgc ttgcatccgg ctaccaactc ctgacgccgg
     9301 aattactgca ataatttttc gcttcataat atatcaatta tgtattattt gttttttggt
     9361 acaattcggt agaaaatctc gttctctttt accatttctc gttcaagtct tgctctctct
     9421 tcaagtgcat ctacgccgtt ctttaaatcg taaatttcgg cttcaattag tttattgcgt
     9481 gaagtaagct ttgtgttttc tacttttaat aaagcaattt cttcttgcac ttcttgataa
     9541 tcactccaac cattttttcc aaaccaaaag ctatattgga aaaagccgag taatagggca
     9601 aaaaaagtaa ttaataaacg catttatttt ctcttatatg aaatagtaat gaactaagcg
     9661 ggttgatttt accttgaatt tgcaaaaaat tctaaaaatc ttaccgcttg ttacttaaac
//
LOCUS       DANLUT010000092         9717 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLUT010000092 DANLUT010000000
VERSION     DANLUT010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9717
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            47..727
                     /locus_tag="PXB38_001665"
     CDS             47..727
                     /locus_tag="PXB38_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL5353969.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            739..2007
                     /locus_tag="PXB38_001666"
     CDS             739..2007
                     /locus_tag="PXB38_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL5353970.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVSDTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YLIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVLVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEGKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2062..2673
                     /locus_tag="PXB38_001667"
     CDS             2062..2673
                     /locus_tag="PXB38_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL5353971.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2727..4025)
                     /gene="aroA"
                     /locus_tag="PXB38_001668"
     CDS             complement(2727..4025)
                     /gene="aroA"
                     /locus_tag="PXB38_001668"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL5353972.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGAETAQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAESDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4071..5165)
                     /locus_tag="PXB38_001669"
     CDS             complement(4071..5165)
                     /locus_tag="PXB38_001669"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5353973.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            5437..6756
                     /locus_tag="PXB38_001670"
     CDS             5437..6756
                     /locus_tag="PXB38_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL5353974.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPYFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(6926..8869)
                     /gene="ftsH"
                     /locus_tag="PXB38_001671"
     CDS             complement(6926..8869)
                     /gene="ftsH"
                     /locus_tag="PXB38_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL5353975.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVTMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(8990..9616)
                     /gene="rlmE"
                     /locus_tag="PXB38_001672"
     CDS             complement(8990..9616)
                     /gene="rlmE"
                     /locus_tag="PXB38_001672"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL5353976.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2715 a         2081 c         1892 g         3029 t
ORIGIN      
        1 ttacagtaag aagtcattgt caatattatc actatggaga tattttatgg cattgaataa
       61 cattttaggt ttattcgccc agtccccact taaaccgtta caaaaacact caaataaagt
      121 gactgaatgt agcgagttat tagaatcttt ttttgaagcg acttttgaac atgattggga
      181 aaaagcagct gaagtgcgcg gtaaaattgt tgatttagaa cgccgcgcag atgcccttaa
      241 acgtgaaatc cgcttaaaac tgcctcgtgg tttatttatg ccagttgaac gcggtgattt
      301 attagaacta gtcacacaat tagataagtt agcaaactat tcaagagata tttccggtcg
      361 cattattggt cgtaaattaa tcattcctac cgaaatgcaa ccacttttca aaaaattcct
      421 ttctcgtagt attgatgcta gccgtcaggt acgcaaagtt ttggatgaaa tggatcagtt
      481 attagaaact ggttttagag ggcgagagct tgatttcgtc aataaaatga ttcttgaact
      541 tgaccaaatt gaagatgata ccgaccaata tcaaattaca ttacgtcata cacttcttga
      601 gttagaaaaa aacctgaacc ctattgatgt gatgttttta tacaaatgta ttgaaagaat
      661 cagcgttcta gctgaccaag cccagcgaat tggttctcgt attgaactta tgctggcgaa
      721 gtcataggag aaaattaaat ggaattactc aatcaatatg gctcaatact ggtgattatt
      781 actgctattg tagggtttat gatggctttc ggtattggtg ctaatgatgt ttcaaatgcc
      841 atgggaacat ccgtcggctc tggaacaatt acgattaaac aagctatttt aattgctatg
      901 gtatttgaat ttgctggtgc ttatctggca ggcggtgaag tctcagatac aattaaaagt
      961 ggcattattg atccggcaca attcgccaat agccctgata tcctggtact tggaatgatg
     1021 gcatctctct gtgctgccgg aatgtggcta attattgcaa ctaaaatggg ttggccggtt
     1081 tcagcaactc acacaatcat tggtgccgtt attggttttg cattaatcac tattggttca
     1141 gatgcaattc aatgggatgc attaggtgga attgttggga gttggtttgt gacccctatt
     1201 cttgcgggga tcgtagcata tttgatcttt attaactcac aaaaactgat ctttaaccgc
     1261 tcaaacccat tcaaacaagc gaaaaagtat ggcccgatgt acatgggaat tactattttt
     1321 attttagttc ttgtaaccgt gtcaaaaggc ttaaagcacg taggattaca tctagataca
     1381 gctgaaacat tgggaatttc attcgcgctt gccttacttg cttttatcat tggatatttt
     1441 tatttccgca gtaaaagctt tgcaatgaaa gctcgtgcag aagggaaagg cttcgctggc
     1501 gttgagaaaa tttttagtat tttaatgctt attacggcct gtgctatggc ttttgctcat
     1561 ggctctaatg atgttgctaa tgctattggg cctctagctg ctgttgaatc tattgtaaga
     1621 agtggtggaa tgattgaagg taaaacgact ttagcccctt ggattctccc actaggcgcc
     1681 ttaggtatga tgattggttt agctattatg ggcaagaatg taatggctac agtaggtact
     1741 ggtattaccg accttactcc aagccgtggc tttgctgctc aatttgcctg cgccgtcacg
     1801 gttgtcattg catcaggtac tggtttacca atatcaacaa cccaaacgct tgtaggagca
     1861 gtattaggtg tgggattcgc ccgtggtatt gctgcactta acttaggcgt tattcgtaat
     1921 attgttatat catgggtaat taccttgcct gtaggtgctg tgctttcaat tattatctat
     1981 tatattttaa gcgctatttt ctattaattt ttcaaaaaga atacaggcaa ctgtattctt
     2041 cctagcttta gaggaatata tatgaagaaa ttatcatcag ctcttctgtc ttgtttttta
     2101 ctcggcctat ctagccctgc tttaacggca gacacttaca ttactgaaaa tctgagtaca
     2161 tttatgcgca aaggtgctgg tgatcaattc cgcatttcag gcgctattca agcaggtgaa
     2221 aaagtcacag tattagatcg taaagagcgc tacagtctga ttcgagatag tcgtaaccgt
     2281 gaaggttggg tacttaattc agacttaagc gatactgcta gtccaaaaga gctgattcct
     2341 caattaaaac aacaggttca agatttaacc aatcgcctga gcaaaatcga taccgaatgg
     2401 caacaacgta ccgcagaaat gcaacgtaga acgcaagatt cagtgcagaa aagcagtgat
     2461 ttggttgagg aaaatgcaca actaaaacgt gaactggaaa tcctgaaaaa caaaaatcgt
     2521 gatttagaaa caatgcacga ttccgagaaa cgtgaaatcg tgattcagtg gttcatctat
     2581 ggtggtgctg tgttaggcgc aggtttacta cttgggttac tcgtgccttt cctgatccct
     2641 cgccgcagac gtaacaacag cggttgggct tagtctgcca caataaaacg taaaaaggat
     2701 tcagttttct gaatcctttt ttacttttat ctgaccgata atttttccaa ctccctaaag
     2761 taagtcggga acgttttagc ggtacaattt ggatctaaga tcgtcacttc tgtattcgat
     2821 aacgcaatta atgaaaaaca cattgccata cggtgatcgt tataggtttc aatttcagcg
     2881 tgctggaagt tttctaacgc aagcggttga atccgaataa aatcttcccc ttcttctacc
     2941 tctgccccga ctttacgcaa ttcggttgcc attgctgtca agcggtcggt ttcttttacc
     3001 cgccagttat aaatattgcg gataactgtt tctccttcgg caaataaagc ggttgttgca
     3061 atcgtcattg ccgcatcagg aatatgattc atatccatat ctacgccttt tagcggggat
     3121 tgctcggctt gaataaaatc ctctccccaa gtgatttttg cccccatttt ttccaacaca
     3181 tcggcaaaca agcggtcgcc ttggatcgat tttttaccaa tgcccgttac ttttaccttg
     3241 cctttaatcg caccggaggc taagaaataa gaggcagaag aggcatctcc ctccaccaaa
     3301 taattacctt gtggagcaac atagccttgt ttacctttaa ctaaaaaggt tttgtaatct
     3361 cgattttcaa ccgtaatacc aaaatcgttc atcatcgaaa gggtaatatc aatataaggt
     3421 tttgatacca gatcaccgat aatctcaatt tccatatcgc tttccgctaa tggggcagac
     3481 atcagcaatg cggttagaaa ttggctggaa atcgagccgt caatttgcac ttttccacct
     3541 tgcaaaccgc tattgctaat tgctaacggc ggatagcctt cattttctaa atactgtacc
     3601 tctgccccta cttggcgtaa agcatcgact aaatgtttaa tcgggcgttc tttcattctt
     3661 ggctcaccgg taagaatgat ttgagctgtt tccgcccctt ttaaacacaa tgctgctgca
     3721 agtggtcgca ttgccgtgcc tgcattgccg agaaacagtg ataagccgtt ttgaacctta
     3781 aaagctccac caatcccttc aactacacag acggttttat cgtccgatag ctcatatttc
     3841 acgcctaacg cttttaaggc attgagcata tgtcgaatat catcactatc taataaattg
     3901 gtcacttgag tcgtaccggt ggctaaggcg gctaataata aggctcggtt agacaggctt
     3961 ttagaaccag gtaaattgat ctcgccttct actcgggaaa tcggggttaa agttagtttt
     4021 tccatttttc tctttaaatt tgtaaaattt tcataaaagg taaccgcttg ttaagctaac
     4081 actttcaata aggcagtaaa aaatctctcg ttttcttgcg gtaaaccgat actaatgcgt
     4141 aaatgattcg gcattccata acctgctatc gagcgaacaa tcacgccttc acgcagtaat
     4201 gcctcataaa tcggagcggc aggacgtttg aaatcaatag taataaaatt gcccttagaa
     4261 gggatatatt ccaagccgtt tgcttggcag aaagcctcat agcgagccat ttccaagcgg
     4321 ttattttctg ccactttttt gacaaattca tcatcattca ttaccgcaat cgctgaagct
     4381 aaggcaagac tattgcagtt aaacggctgg cgaacacgat ttaataaatc cgcaatttca
     4441 gggtttgaaa ccgcataacc aatccgaagc ccggctaagc cgtaagcctt agagagtgaa
     4501 cgtgacacaa ttaaattcgg gtattttgcc aataagccaa acgaatccac ccgttcttga
     4561 ggcgcagtaa actcggtata agcttcgtcc agcaccacga ttacatttgc cggcacttta
     4621 gctaaaaagc cctcaatttc cgcttgggtt aaaaaattac cggtcggatt attcgggttg
     4681 gcaataaaaa ttaatttagt tttttcggta attgcagcca aaaaggcatc taaattgtgt
     4741 ccccaatttt tagccagaat ttcacgggca acggcattaa tcgctttcgt caccaacgga
     4801 tacacaataa acgcatactg agaatagata atttcatctt gctcaccggc gaaggtgtgg
     4861 gcaaacagct ctaataaatc gtttgagcca ttgcctaagg tgatttgatt ggcttgtacg
     4921 ccaaattttt gggcaatagt ggtttttaat tcaaagccgt ttgaatccgg atagcgggtt
     4981 aaatcgtcaa gctgattcag aatcgccttt tttgcacttt caggaaaacc aaacgggttt
     5041 tcgttcgagg ctaatttaat gatattttga atccctaatt cacgctctag ctcctcaatc
     5101 ggctttcctg cttggtaagg cgaaagggat ttcacgccct catttgcgat gttgataaat
     5161 tgcataataa cctctgatta ttcttataaa atataagttc ggattgtagt aaagaatgat
     5221 tgcctttacc agtaaatttt ttgttacaac tggaaagaaa ttggtacaaa cattcggatt
     5281 agctttgcaa aaagcgtaaa aaatcttacc gcttgtcatt tatcagttag ggaaaataaa
     5341 aaatcactct cttatataaa aacaattacg caaacgattg cttattaaaa aaacttcagt
     5401 ataatgccga cattttttaa ctctcgagga atcactatga accatttact ttattctgtc
     5461 gaagacaaac cgcctttcgg gctgagctta ttgcttgcct cacaacattt attagccgct
     5521 ttaggtggca ttatcgctgt gcctttagtg ctagggaatg tactcaaact ctctactgcg
     5581 gatactataa tcttagttaa tgctgcactt ttaatttcag gcatcgtcac tattattcaa
     5641 tgtcgaggta ttggcccaat cgggattaga ctaccgagtg taatgggaac tagctttacg
     5701 tttgttgcag cagcattagc gattggtttc agtgaaagtg gcattgccgg cattatggga
     5761 gcctctttag ttggctctct agtgatgatt atcggcagtt tttttatgcc ttatatccgt
     5821 aagctttttc cacccgtggt aacaggtact gtcataatga tgattggcct aagtttaatt
     5881 cctgttgcag tagactggtt tgctggtggt cagcgtactg atccacacta tgcaacccca
     5941 gaaaatctta taatggctag ttttgtatta attattgtcg ttgctttagt acaatggggg
     6001 aaaggtattt tttcagctgc tgctattgtg attggtatga tgataggtta tatcgtttcg
     6061 ctagctctgg gttgggtaag ttttaatggc gtgaaagaag cacaactttt tgcgttacca
     6121 caacctctac attttggctt agaatttcca atctccggta tcatcggaat gtcaattgct
     6181 tatttagtta ccattgtaga atctagcgga aatttcttag cactaggcaa tgcaactaaa
     6241 actgaaatta ccggaaaaca cttacgtgga ggtgtattat gtgatggttt aggctcagca
     6301 tttgcggcaa ttatgtccac aactcccttt tcttctttct cacaaaatat tggggtcatt
     6361 tcattaaccg gtgtagccag tcgctatgtt gtagcattta caggcgcatt acttgtacta
     6421 gccggtttat ttcctgtatt tggagcatta atcgtgtcta tcccgttacc tgtgcttggc
     6481 ggtgcaggct taatgatgtt tgccatgatt atcgcagccg gtatccaaat gttagataat
     6541 attcaacgta gcaaacgaaa cggtttaatt attgctatct ctatcggttg tgggctggcc
     6601 gtaacaactc gacctgagct attggataag cttccatact tctttaaaga agtttttggc
     6661 tcaggtatta cggtcggctc cttattagca cttattttga atttagtttt acctgaagat
     6721 aaaataacca agaaagaaaa taagagtgat gaataaatca ccctaaaaaa acaaggacag
     6781 ctcacaatac aactttgatg ctgtccttta ttcccataga gagcatattt aaatttaggt
     6841 taataaaaaa atctgcactc tatattggtg tttaccttta gagtacagat ttcttcttat
     6901 tctaactttc tagcaaacaa ttagattaat gttccgcttt ggtatcggct aacgaatccc
     6961 caatgttatt atctttattt ggattatcct ctaaagttga acttacatcc gctgcctgtt
     7021 caccacttgg tggagtggcg ttatcgtctt tagttggggt atctgtccaa cctgatggtt
     7081 cacccaccgg acggcgtgcc attaaatcat caatttgctt gctgtctaag gtttcgtatt
     7141 tcaataaggc atctttcatt gcgtgtaaga tgtccatatt ttcttccaaa gtttgcttcg
     7201 ctcgttgata gttgcggtca atgatcttac gcatttccac atcaatcaat ttttgcgact
     7261 cttccgatac gcccttaatt gcacccattc catcttcatt ttgatagaaa atcgggccta
     7321 attcttttga gaagccccat tgagtaacca ttgctcgtgc aatttgggtt gctcgatgaa
     7381 tatcagagga agcccctgtg gtaattttat cttcaccaaa aatcaagccc tcagcaattc
     7441 gccctgcaaa tagggtggaa agttggcttt ccaatttggt aaatgtttcg cttacacggt
     7501 caccttccgg taagaattga gcaaaaccta acgcctgacc acgaggcaca attgtcactt
     7561 tattcagcgg atcgtgttcc ggcattaaat agccaacaat aacgtgtcca gcttcgtggt
     7621 aagcagtatt gatgatctct ttttccgtca ttgtatttga acgtcgttcc ggccccatat
     7681 tgattttgtc acgggcttct tcgaaatctt ccatcgttac cacacgttta ttcttacggg
     7741 cagcaaataa ggcagcttcg ttcaccaagt ttgctaattg agcaccagag taacccggcg
     7801 taccacgagc aatttgcatc gggtcaactc cctctgcaag cggtactttt ttcaagtgaa
     7861 ctttcaaaat ttgctcacgc cctttcacgt tcggcaaatc gaccgtgact tggcggtcga
     7921 aacgccccgg acgagttaag gcatcatcta acacatcggc acggttggtt gcagcgatga
     7981 taatcacacc ttcagagcct tcaaagccgt ccatctcaac taacatttgg ttgagggttt
     8041 gttcacgctc atcgtgtcca ccgctgaaac ctgcaccacc acgtttacgc cctaccgcat
     8101 caatttcatc aataaaaata atacaagggg catttttctt ggcttggtcg aataaatcac
     8161 gcacccgtga agcacccaca cctacaaaca tttccacgaa gtcggaacct gccattgtaa
     8221 agaatggcac tcgtgcttca cctgcaatcg ctttcgccaa taaggtttta cccgtacccg
     8281 gagggcctac catcaagatc ccttttggaa tgcgcccacc taatttttga aatttagttg
     8341 ggtcacgcaa aaactcaaca acttcgccta cttcttcttt ggcttcatca cagccggcta
     8401 catcagaaaa tctggtctta acttcgtctg cggtcaacat tttggcttta tttttcccaa
     8461 agcccattgc accacgtcct ccgccacctt gcatttgtcg catataaaac acatagaaac
     8521 cgattaacag caacattggg aaccaagaaa tcaaaatttg cgagagcaag ccacgacgct
     8581 cagcaggctg accggtaatc actgcattgg tttttgctaa atctgccatt aagtactcat
     8641 catacatcgg cattacggtt tggtaggttg caccatcatt tttcgtcacc aaaatggtgt
     8701 catcattctg tttgaaatcg acccctttta aacgattttc tttaatatcg cttaaaaaag
     8761 tcgaatatgg cactgtattt gagctaccac tgaaattaga attaaaacct tcataggctg
     8821 tcatcatcac aatggcaatc accacccaaa gtaaaatatt tttaaccata tcgttcaagg
     8881 ttaatcccct atctgctgaa taaaaaactg ttcaagatta ctataaaagc ggtcgaattt
     8941 tccaattttt ttgcaaaatg ttaataaaaa atgaccgctt gcttgttttc tagcctttat
     9001 aacctgtcgc tacaatataa acttctcgag accgatctcg agacgcctcc ggttttctga
     9061 cttttaccac actaaagagc gagcggattt ctcgaaggta ttcatcaaat ccttcgcctt
     9121 ggaatacctt aaccacaaaa ctgcctttgg ttgctaatac ttggcgacac atatccaatg
     9181 ccaattccac taaatacatt gcacgaggaa tatcaaccga cggcataccg ctgaaattgg
     9241 gagccatatc cgacatcacc acattcactt tgtcttcgcc tactcgctca agtaacgcat
     9301 tcagcaccga ttcttcacgg aagtcgcctt gtaagaaatc cacgcctaca atcgggttca
     9361 tatctaaaat atcacaagcg attactctgc ccttactgcc gatttgcgtc accacatatt
     9421 gcgaccaacc gcccggtgcg gcaccgagat ccaccaccgt cattcccggt ttgaataaac
     9481 ggtcggtttg ttgaatttca tctaacttaa aatacgcccg tgaacgcaat ttttgtttat
     9541 gtgctttttg cacaaattga tctttaaaat gttctgcaag ccaacgtgat gaactcgcac
     9601 ttcgttttct acccatttgt tcttctatct taattaattc aacgatttat aataagggtt
     9661 aaattagcaa attcaagaga tgttctaaaa tttagctcgg cttattatgc ttaatta
//
LOCUS       DANLUT010000093         9662 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLUT010000093 DANLUT010000000
VERSION     DANLUT010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9662
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            100..1302
                     /locus_tag="PXB38_001673"
                     /pseudo
     CDS             100..1302
                     /locus_tag="PXB38_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252774.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FRG domain-containing protein"
     gene            1328..4486
                     /locus_tag="PXB38_001674"
     CDS             1328..4486
                     /locus_tag="PXB38_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5353977.1"
                     /translation="MLGINENTIEQSAIATLQGLGWDYTYGKTILAGLEHEWRERATE
                     VVLKPLLAEAIAKFNPNLPACEVENVVAQVCRAESSDLAERNRQAYDWLRNGVKITYQ
                     LDGEQVSDVVQLIDFQRPENNDFRIVNQLDIGGKKGKRIPDLIGFVNGLSLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDSIVARIGSLTADFDRFTPWRVV
                     DEKNQNKRIVFEDELTALLQGVMNPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLATTGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQGCLKNPTLVLVTERN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFTKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(4520..7411)
                     /gene="glnE"
                     /locus_tag="PXB38_001675"
     CDS             complement(4520..7411)
                     /gene="glnE"
                     /locus_tag="PXB38_001675"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL5353978.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKPIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(7583..7864)
                     /locus_tag="PXB38_001676"
     CDS             complement(7583..7864)
                     /locus_tag="PXB38_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL5353979.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYGDVIIKPFKRVF"
     gene            complement(7866..8330)
                     /gene="yciA"
                     /locus_tag="PXB38_001677"
     CDS             complement(7866..8330)
                     /gene="yciA"
                     /locus_tag="PXB38_001677"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL5353980.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(8320..8877)
                     /locus_tag="PXB38_001678"
     CDS             complement(8320..8877)
                     /locus_tag="PXB38_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL5353981.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(8886..9635)
                     /locus_tag="PXB38_001679"
     CDS             complement(8886..9635)
                     /locus_tag="PXB38_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5353982.1"
                     /translation="MSIKFVDLLQQSWNFMRNQQAFSLFAIVTIVVVQLVFILVSPNS
                     PELMVESQPQQLQIDASKMVSILLPTILLGVVNLLINVLMIFNIQSINDGNYRQFFQN
                     AGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVIIALPVLVVGFYFFIKLSLVIY
                     AYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYLLPGMLSRLFTVFGNDFIGIF
                     ITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
BASE COUNT         2946 a         2021 c         2002 g         2693 t
ORIGIN      
        1 gtatttttaa taagataaaa gaaaatatta ttcaaaataa taacttaacc aagataagag
       61 atgagttact acctaaatta ttaaatggag agttattcaa tgaataacga agaattatct
      121 tctagttact ttgatgaaat caaagaatgg caaagtggcg aacctatttt tgtctctaaa
      181 aacgatgaga taaatagtcg tgtcccttta ttaagagtaa atggctggaa aaagtttatt
      241 gatttacttt ctacaaattt tttccaagaa aatatttctg aactcatttt tagagggcaa
      301 cgccgatatg attggggact aatgcccaat attgccagaa atagtgataa tggcttgttt
      361 actaaagaat tgatggaaaa tcagcttaat aactttaaaa aagccattcg aggtcggatt
      421 aaagattata ctttattgct taatgaagat gatgatgaaa tttgggcaat tgggcaacat
      481 tatggattga atacaccttt attggattgg acatattctc cttatgtctc attatttttt
      541 gctttttcac gcaaagatgt taaagctgaa aagccaaatg aataccgagt tgtttatatt
      601 gcaaataaga agttactttc taactttgtt acctttgttg atcccaaagt ggatatgtat
      661 gggagattgg tcaatcaagc aggtttattt attaaagcag aagcaggaaa atcgatagaa
      721 tctttaattg tagattctat tgcggagcag aacgaaagtg aatttctctc tgatgagtca
      781 ttcgaacaag aaatagcaaa atatctctga aaaatttata ttttaaacac accagacatt
      841 caaagtgatt gcattttgtc tttgcgacaa atgaatattc atcacgccaa tttatttcct
      901 gatttaatgg gggctgctga ctattgcaat ctactttctg aatttcagcc atataacaaa
      961 aaccaaaaaa ttattgatag ttcaacgcca aatcattggg agtctccaac tcttgcaaat
     1021 aacgaaggta gtatccctac tcttacaaac aatagctcta ttaataatat taaggaatta
     1081 ttaatacctt atctagctct tcctgatgca gacctagaac aaatagccaa taagttactc
     1141 aatattctaa aaaccaatat ggtaactgac tggcaaacac gagatgaaat taaagcaaaa
     1201 atcaaaattg catggcgtag aatcctatct caaaccaaca tgaataaaga acaaatagaa
     1261 aatatgttag ataaattatt cacattagat tttcagccat aaacattatt ttcacggaga
     1321 acccacaatg ctaggcatca acgaaaacac cattgaacaa tccgccattg cgactttgca
     1381 aggcttgggc tgggactaca cctacggcaa aacgattttg gcaggtttag aacacgaatg
     1441 gcgggagcga gccactgagg tggtattaaa gccgctgctt gccgaagcga ttgcaaaatt
     1501 caacccgaat ttgcccgctt gtgaggtgga aaatgtggtg gcacaggtgt gccgtgcgga
     1561 aagtagtgat ttggcggagc gtaatcgtca ggcttatgat tggctaagaa atggggtcaa
     1621 aatcacttat cagttggacg gtgagcaggt gtctgatgtg gtgcagctga ttgattttca
     1681 gcgtccagaa aataacgatt ttcgcattgt caatcagctg gatattggcg gtaaaaaagg
     1741 caaacgcatt cctgatttga ttggctttgt caatggcttg tcgctggtgg tatttgagct
     1801 gaaaaatccg ctcaaagaaa atgccgacat cggcaaggcg tttgcccaac tgcaaaccta
     1861 taaagatgaa atttctgatt tgtttgtgtt taatcaggca ctcgtgattt cagacagcat
     1921 tgtcgcccgt atcggttcgc tgaccgccga tttcgaccgt tttacccctt ggcgtgtggt
     1981 tgatgaaaaa aatcagaaca aacgcattgt gtttgaagat gaactcaccg ccctactgca
     2041 aggcgtgatg aaccccaaaa atctactgga ttatgtgcag aattttgtgg tgtttgaacg
     2101 ggacggcaaa aaccgtttga ttaagaaaat cggggcgtat catcagtttt atggcgtgaa
     2161 tgaagcggtg gattgcacct tgcttgccac cacaggcaac cgcaaaatcg gtgtgttttg
     2221 gcatacgcaa ggctcgggca aatcgctttc gatgctgttt tatgcaggta aagtattaag
     2281 ccaaggctgc ctgaaaaatc caactttggt gttagtcacc gaacgcaacg atttagacgg
     2341 tcagctttac gccacttttt gcggtggtga ggcattgctc aaacaaacgc ctatccaagc
     2401 cgatgggcga gacgaactcc gctctgccct tgccagtcgt tcagcaggcg gtgtaatttt
     2461 taccaccatt caaaaatttg gcttaatgga gggcgagctt gcccacccag tgttaaacga
     2521 gcgggaaaac atcattgtga ttaccgatga agcacaccgt tcgcaatatg gttttagcca
     2581 aaaaatcaac cacaaaggcg agtatcgtga gggttacgcc aagcatttac gcagtgcatt
     2641 gccgaatgct tcttttattg gttttacagg cacgccgatt gaacttgatg acaaagacac
     2701 ccaagaagtc ttcggtaaat atgtctcgat ttatgatttt gaagatgcgg tggaagatgg
     2761 ggcaaccgtg ccgattattt atgagccacg ccaaatcagc ttaggcgaaa gtggcgagtt
     2821 taccaaagtg atggaagagg cacaacaact gattgatgac gatgaaaaca gctataactt
     2881 ccgcctgcgt gaaaaactgc acagcgtgga tagccgtttg caaaaaatgg cggaagatat
     2941 tattgcccat tacgatgagc gtaccaaaca gcaagacggc aaggcgatgg ttgtggtgat
     3001 gagccgtgcc atttgcgtga aattgtacga aaaaatcacc gcacttcgtc cagaatggca
     3061 ctcaaacgat gtgcttcaag gcagcattaa aattgtgatg acaagtaatg ccagcgaccc
     3121 tgccgagtgg caaaaacaca atcaggataa gaaaacctta gaaaaacgct ttaaagaccc
     3181 agacgatccg ctcaacatcg tgattgtgcg ggatatgtgg ctgacaggct ttgatgcgcc
     3241 ctgctgtaac acaatgtaca ttgataaacc aatgagcgga cacaacctga tgcaggcaat
     3301 cgctcgggta aatcgggtat ttcgcaacaa aagccgtgaa aatggcggct tgattgtgga
     3361 ttatgtgggc ttgaccgatg agctggaaaa agcgatgaag cagtacacca acgcaggcgg
     3421 caaagaaaag ccggtgcggg acatttcagc ggtgctggaa aaaatggtgg aacatatcac
     3481 ggtcattcgt gggcaatttg ccacaccgat tgacggacaa gcggttgata ttgccaaaat
     3541 gttgcaaatc agcgaaccgc ctaaactgct caatgcgatt ttgacatcag ccaaccatat
     3601 tcttgcccta gaccgcattc agccacctga taacactgcc aaagacaaaa ccccacgcaa
     3661 aaacgccttt ttgcaatcgg tacgcttggc gaaaaaaggt tatgctttgt gtggggcatt
     3721 aaaagcagtt gaaccctata aacaggaact ggcgttttat gatgcagtgc gtgccaccat
     3781 tatcaaaaac agcaccgctc ctcgcaattc ttcgagcgaa aatgaccgct tgttgcagct
     3841 taccgccttg atgaatcgtg cggtacagtc ggatggtgtg gtggatttat ttgatttgct
     3901 gaaaaaagac cgcccaaaca tcaacctgct ttctgatgag tttttggaaa cagtaaaaaa
     3961 cagcccaacc aaagatttgt ggctatcagc aatggagcgt tatcttgcct cacaactgcg
     4021 agagcaaagc ggtgccaatc ttgccacaaa aaaagcattt gaacagaaac tcaaagaggc
     4081 gatgaaccaa taccacaacc acaatttaag cgtattggaa attttagaag agctgatcgc
     4141 cctcgccaaa gagtttgaag cccgccaaaa acgaggggaa gcgttgggac taagccctgc
     4201 ggaaatggcg ttttatgatg ctttggcacg taatgaaagt gcggtgcggg aaatgggcga
     4261 tgaggtattg atgaaacttg ccaaagacat taccgataaa ttacgcaaat cggtcaccgt
     4321 agattggcaa tataaagact cggttcgtgc caaaatgcga accttaatcc gcattgctct
     4381 gcgtacctat aaatacccgc ccgatttaca ggcggaagcg attgagtttg tgttgcaaca
     4441 agcggaagag atcgccggag agttcgctat caccgaaacg gcgtaatcta tattagggcg
     4501 tgcaatgtac gccctaaatt tatgctaata acctctgcca catttcccgc acaaatgctc
     4561 gctcggtggt aaattcactt gcgtccacca cgctgtcttt gcgtaataag tttaggtggt
     4621 ggattttgtt acgcagtgcg gtgtagcaat gttgtagctg ttcgctttgt tcggaactta
     4681 aaataccgca ttctactgcg ctgtcgaaaa ttcggacatt atccgaccat actgccattt
     4741 tcgggtgttg gtggctgtgg gctaatacca aatattgggc gataaattca atatcggtaa
     4801 tacctccttg atcttgttta atatgaaatt gctcggctga atgcgagctt aaatgttggt
     4861 acattttctg tcgcatttcg caaatttctt ggcgtaattg accgcttgca cgaggctgag
     4921 caagcgtgct ttggcggatt ttttcaaagg cttgtttgag gttttccgcc ccaaatacac
     4981 atcttgtccg cacgagggct tggctttccc acgtccacgc ttcatttttt tgataatgct
     5041 cgtaggcatt gaaagtgctg actaaaagcc cagcctcgcc tgatgggcga agtcgcatat
     5101 ccacttcata tagtacgccg gcactggtat taaggttaaa aatcgagtta attttttgag
     5161 ccaattttaa gtaaaattga tggcttgaaa tctctttttt accgccaaca gtttggctat
     5221 cctctggggc attatgcaag aaaaccaagt cgagatctga attatagccc agttcaatcc
     5281 cgcctagctt gccgtagcca ataactgcaa accctttttc atcagcctct aaatgttccg
     5341 gcacaccaaa gcgttggctg acttgcttcc acgccatatt taccaccgca ttaataatcg
     5401 cttctgctaa gtaagtaaga tgatcgctga tcttcattac cagcagcacg cctaaaatat
     5461 cagcagcggc gatgcgtaaa atttgggttt gtttgaactg acgtaagcca tcaatcagtg
     5521 cttcttcatc ttcttcagga atgcggatta aataatcctg caaggcagat tgatattttt
     5581 caaaagcctg cacgtcggtt aagcctctat ggctcatcag ctcatcaagt agcattggat
     5641 atcgagctat ctgttccgca atcataaccg acttactaca caatgctaaa agttgaggca
     5701 gaatctgctc tttttcgagc attaattcca aataggtagt tcgggtggtg attttatcga
     5761 caatattcaa cacgcgaggc aataacaata aatgatcttc acctttaaaa atgctgtcgg
     5821 caattctagg cattaaattg cgtagcacct ctcgccctct taccccaatc gggcgtttta
     5881 cccaatcttg aaaggtagta gaaaagtgac ggaaaatctc cgtataatca ttttctgcaa
     5941 cctttggata accttttagc actgcggata aatcttcaag gcgaatgtta tagtgcaaaa
     6001 tgtctttcca ttcggctaat ttttcattaa ccggattgca gttggcttgt gtttcctctt
     6061 caccgataat ttcattaaaa atctggcgta ctgcttgttg atattggctc aatactgcca
     6121 taaattgttg ccaatcgtta aaggaatgct ccacccaatg cgttttttcg ctatatagat
     6181 cttgctgata atagctttgg caagcaaata caaggcgggc ttgcgaggct tcatcagtgg
     6241 gtagggtttg agtttgttta tcgtcaatcg cttgtaatac attttcaatt tgacggtaaa
     6301 aaatataggc attgtggagc gtttccacct gcgtttgggt taataaattt aattctgcca
     6361 agcgtggtag cacttttaac aggctacgtt cttgtaaaat tttatctcgc ccgccacgga
     6421 tcatttggaa agtttgggcg ataaactcca cttcccgaat cccaccggca ccaaatttaa
     6481 tattatcggt taaattacgg cgaaccactt cacggctgat tttttctttc atttcacgca
     6541 acgattggat tgcactgaaa tccagataac ggcggtaaac aaaagggcgg agcatttgct
     6601 ttaaatagcg atgatttaaa ttttggctat cctcgcctaa aatttttgct ttaatcatcg
     6661 cataacgttc ccaatcacgc ccttgctctt ggtaataatc ttccattgca gtaaaactca
     6721 gcaccaaggc tccgctatca ccaaaggggc gaagtcgcat atcggtacga tacacgaaac
     6781 catcagcggt gatctcatct aatactttaa ttaaccgctg ccccattcgg gtaaaaaatt
     6841 tgctgttttc aatcggtttg cgtccacctt cggtttcacc aatatcgggg taggtaaaaa
     6901 tcaggtcaat atcggaagaa aaattaagct ctcgtccgcc caatttgccc atacctaaaa
     6961 tcagcagttc ttgtgtttcg ccaagagtgt tctttggcgt gccatattcg gcacagcaac
     7021 gctgaaacaa ccaatctcga gcggctagaa tcaggctctc ggctaaatcc gacaaatgct
     7081 gaaataccaa ttctaccgtc gctaatttat ttgactgaat aaagctcaga cgagccaatt
     7141 cacggtggcg aaattgccgc aaaaccctcc ccaacatttc ttcattttcc actcttgcta
     7201 atatttttgc taaacgctca gtataattgc agcaatcatc aggcgtagga aacttggcaa
     7261 gccattctgc cagtaaatcc ggctgttttt gcaaggtttg atgcacgaaa ttggaaagcg
     7321 aaatcgccgt cacaagcggt tgaatttgct cagaattttg caaattgggc ggtaaattga
     7381 gttgggataa gggaattagg gtggtaagca taaatttagg ctcaaaattg aaaatagata
     7441 gaattttacg ctcgatcaat tcccctcttt agcaaagagg gcttagggga gatttggcag
     7501 aggtaatttt actctcatac gaaacattaa tatcgtaatc aaatctcccc cagcccctct
     7561 tttctaaaga ggggagaaaa aattaaaaca ctcttttaaa cggtttaata atcacatcgc
     7621 catacacacc ggcttccaca taaggatctt ggcttgccca ttgttgagct tcttcaagtg
     7681 agttgaactc tgcaattaca gttgaaccgg ttacgcttga gccgtcttca gtcgggttag
     7741 gccctgcgat taataatcga ccttctgcct gtaatttttc caaacgagcc aaatgagccg
     7801 ggcgaacttc taaacgtttt tccaacatat tgggattatc ttgggcaaag ataacataat
     7861 acatactatt ctccttgttt ttcaggggtt aaatcaatta gcgataatgc ttcgtctaat
     7921 tcggggttat tttctctcgg cacagcacgc ggtttgcctt ctttatcaat cgctacatag
     7981 gtaaataagg cttcggttac gagataacgt tcgcgattgc cctcataaac ttgtttgata
     8041 aagacctcga ctttcacttg catcgaagaa cgccctatgt gcattaactt gccgtagcag
     8101 cagaccacat caccgactga aatcgggcgg tggaaaatca ttttatctac cgttaccgta
     8161 acgactctac cttttgccaa ctctttggct aaaattgcac cgcctaaatc catctgcgac
     8221 ataatccaac cgccgaaaat atcgccattg gcgttagtat ctgacggcat tgccaaagtt
     8281 cttaaaatca gtttcccttc cggggctttt ccatagggtt tatctttcat ttttttgttc
     8341 ctgcttttca gcatctttta agtaagggta aaggacgaaa ccggtaataa ccgttgcgac
     8401 taaggttaag ccaataatgc caaaggattt gaaatcaacc caaatctctt ccgataaata
     8461 ttgactgata taaatattca gcagcataca aatcagaaag aatactgccc aaccgaagtt
     8521 tattttattc cacactgctt caggcaactg aatttctttg cctaataatt ttttgattaa
     8581 tggtgttttg aacacaaatt ggctcactaa tagcaccaat gcaaacagag cgtaaacaat
     8641 ggttactttc cattgtaaat atttaacttc attaaaatag gcactcagta agccgaaaaa
     8701 gaccaccgag ccacccataa taatttgctg tttttcaatt ttgccgtaga gcatttttaa
     8761 ggcgatcatt tgcacgattg tagcgataac caatgcgata gacgccatct gaataccgct
     8821 cattttatac acgacaaaaa acagaatcag cggaataaat tcaagtaact gtttcattga
     8881 tactcctaac gcactgccgg catttggcgg taaacttggt aaaagcggaa gctgaaaatc
     8941 gccataaaga cgttaattac cgcacttaaa acaatggtaa tgaatatgcc aataaagtca
     9001 ttaccaaaca ctgtgaacaa acgagataac atccccggta ataaataaga aatcacacaa
     9061 aataaaatca gcggtagcat ttttccacgt gataattgaa gcgtaaattt aatactttcc
     9121 gatagacttt tctgcggttt ctccaataaa taagcataaa tcactaacga taatttgata
     9181 aaaaaataaa aaccgactac caacaccggc aatgcaataa tcactgtttc aggcgatgcc
     9241 attgcaaaag atgcaccgag agaaagcggt aacaccatca caaattgtaa caacagcaca
     9301 ggtaggaagt gctttaatgc gtttcctgca ttttggaaaa attgacgata attgccatcg
     9361 ttaatcgatt ggatattgaa aatcattaag acattgatca aaagattgac aacacctaat
     9421 aaaatagttg gcaatagtat agacaccatt ttagaggcat caatttgaag ttgttgcggt
     9481 tgcgactcca ccattagctc aggcgaattt ggcgacacta aaataaaaac caactgcaca
     9541 accacaatgg tgacaatggc aaacagtgaa aatgcttgtt gattacgcat aaagttccaa
     9601 ctttgctgca ataaatcgac aaatttaatt gacataaaat acccttcaat agattgtaaa
     9661 ta
//
LOCUS       DANLUT010000094         9635 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLUT010000094 DANLUT010000000
VERSION     DANLUT010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9635
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(19..1302)
                     /locus_tag="PXB38_001680"
     CDS             complement(19..1302)
                     /locus_tag="PXB38_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5353983.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMASEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGN
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            1468..5183
                     /gene="metH"
                     /locus_tag="PXB38_001681"
                     /pseudo
     CDS             1468..5183
                     /gene="metH"
                     /locus_tag="PXB38_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
     gene            5291..7294
                     /locus_tag="PXB38_001682"
                     /pseudo
     CDS             5291..7294
                     /locus_tag="PXB38_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
     gene            7393..8760
                     /locus_tag="PXB38_001683"
     CDS             7393..8760
                     /locus_tag="PXB38_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5353984.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKANITQAMSFVRLKSKYNKELLPTYLFAFLQSSYGKIQINRNARPTGQYNL
                     NNEELGAIKVPLIDLETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQAD
                     SNPVNVKSLKESFLQTGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTK
                     PMYQYIEIGDVNIGDGSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGE
                     NDQDLVVSGAFTVLRRKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDIL
                     NLPIPKISGEIQEKIAEYIRQSNDLRQQAQNLLAQAKNNVEFEIENNSFNINELEVRG
                     GGRSC"
     gene            8774..9508
                     /locus_tag="PXB38_001684"
     CDS             8774..9508
                     /locus_tag="PXB38_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5353985.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
BASE COUNT         3079 a         1891 c         2132 g         2533 t
ORIGIN      
        1 tcttattttt atgaatagct attcagcttg tccccaagga gcaaccttaa acaacattag
       61 cattcccgga ataccaataa agaaacagag ccagaagaat tggtaatagc ccatcatttc
      121 cactaaattc cctgtgtatg cccctaacat tttgcttggt agggcagcaa ggctggtgaa
      181 aatggcgagc tgcattgcag tgtaagcggg attagtttca cgagccataa aggcaacgaa
      241 agccgctgtg cctaaaccca cgcccagata ttcacttgcc atcactaagc ctaatttcca
      301 aagctcggca gctccaatgc tttcggtagg gaaatgctca aaactggcaa ggtaagcgaa
      361 gcctaaaata gtaattaatt gtacaaatcc gaacagccat aaggctcggt taacgcccaa
      421 tttcaacatt gccacgccac caataatacc gccgccaatg ctgcaccaaa gtgaagttat
      481 tttcacaatg ccggcaatgt gcgatttagt aaaacccata tccaaaataa atttggtttg
      541 tagcgtagtt gcaagggaat cgcctaattt atataggaaa ataaatagaa tcagcccaat
      601 cgctcctgcc acgcctttac gggtgaaaaa ctctttgaac ggatcgacaa acgccatata
      661 aaacggctta gaacggtcga ttggcttatg attcggctcg gcagcgatta ttagcgtaac
      721 gaataagcaa ggcactaaaa aagcagcggt aatcagaaat acggtatccc acgcatagtg
      781 gtcggctaaa aataatgaaa gcccacccgg aatcagccct gcaatacgat aagcattaac
      841 gtggatagag ttacctaacc cgagttcgtt atccgataaa atttcacgcc gaaaggcatc
      901 caccacaatg tcttgcgtgg cggaaagaaa agctaatagc acagaaagag taacaataat
      961 tgaaatatct tgcactgggt tgaacaagcc aaagctggct aaaatcacca atagcccgat
     1021 ttgtgaaatg aaaatccagc ttttgcgtct gcctaaaaaa ggtggaaagt agcgatctaa
     1081 caatgcagcc cacaggaatt tccacgtgta gggcaaagag gtcagggtga aggcggcaat
     1141 agttttaata tctaaattgg cactggttag ccaagccggc attagctgaa ttaacacaaa
     1201 caacggtaaa ccggaacaaa agccggtgta aacacaaagc aacatatttt tagtaaaaat
     1261 ctgttgccag atagagcgtt tgggttcgtg acaagcggtc atatttctcc tacattttgc
     1321 aaaataaaaa ggggaagaac tgagccaata tagcataatt ttaaaggcga ctctaaccct
     1381 ttccatttcg tcacagataa ggtttgacag ccttgcgaca tatttctatt attcctttta
     1441 atcaaactaa aaaactggaa gcagagtatg aacacgcagc atagaaccga attacttcaa
     1501 aatgccctta ccgaacgcat tcttatctta gacggtgcga tgggaacgat gatccaaaaa
     1561 tataaactaa ccgaatctga tttccgaggt gaacgtttta aaaacagtac catcgatctt
     1621 aaaggcaata acgacctact cacactcacc cagccactcc tgatttctgc tattcacgag
     1681 aaatatttag ccgccggtgc ggatattatc gaaactaata cctttagtgc gacgaccatt
     1741 gctcaagcag attatgaact tgaaagtatt gcttatgggc tgaatcttgt gggggcaaaa
     1801 cttgcccgtc ttgccgccga taaattctcc acccctgaaa aacctcgttt tgttgccggt
     1861 attcttgggc cgactaaccg tacttgttcg atttcccctg atgttaatga ccccggtttc
     1921 cgtaacatta cctttatgca actggtggaa gcctatgccg aggcaacccg tggtttgatt
     1981 gaaggtgggg cggatctgat tatgatcgaa accattttcg ataccctgaa tgccaaagcg
     2041 gcggtgtttg caattgaaac agtgtttgat gaactgggcg tgaaattgcc gataatgatc
     2101 tccggcacca ttaccgatgc ctcagggcga acgttgtcag ggcagaccac ggaggcgttt
     2161 tataactcgc tccgccacgc caaaccgctg acgttcggct tgaactgtgc gctcgggccg
     2221 aaggaactcc gcccttatgt agagatgatg tcgaaaatca gtgagacttt tgtttcggtt
     2281 cacccgaatg ccggcttgcc aaacgctttt ggcgggtacg atttaggggc ggaagagatg
     2341 gcgacttaca tcaaagagtg ggcagaactc ggctggctga atattgtcgg cggctgttgt
     2401 ggcaccacgc cggagcatat ccaagccttt gccgaagcaa ccaaaggcgt tgcgcctcgt
     2461 aaattacctg aaattccaac cgctatgcgt ttgtcgggct tagaaccgct gacgattgac
     2521 gataattcgc tgtttgtgaa tgtgggcgaa cgcaataacg tcaccggttc ggcaaaattt
     2581 aagaagctga ttaaagaaga aaaatttgcg gaagcgattg aaattgccat cagccaagtg
     2641 gaaaacgggg cgcaggtgat tgacgtgaat atggacgagg cgttgctcga ttccaaaaaa
     2701 tgtatgaccc gtttcctcaa cattcttgct accgaacctg aggcggcaaa agtgccgatt
     2761 atgattgact cctcgaaatg ggaggtgatc gaggcgggct tgcaaacggt gcagggcaag
     2821 ccgatagtga actccatttc actcaaagag ggcgaagaga aatttattca ccaagccaaa
     2881 ctctgccgcc gctatggggc tgcggtggtg gtgatggcat ttgacgaagt cgggcaagcg
     2941 gataccgaag aacgcaaggt agaaatttgt acccgagctt atcggatttt ggttgatcag
     3001 ctcggcttcc caccggaaga cattattttc gacccgaaca tttttgcgat tgccaccggt
     3061 attgaagaac acaataacta cggcgtggat tttatccaag cctgtgagcg gattaaacga
     3121 gacttgccac acgccaaaat ttccggcggg gtgtcgatgt ctctttctct ttccgaggca
     3181 acaatgtggt gcgtgaggct attcacgccg tgttcctcta ctatgcgatc aaagccggaa
     3241 tggatatggg gatcgtgaac gcagggcagt tggcgattta tgacgacctc gaccctgaac
     3301 tgcgagaggc gattgaagat gcggtgctga accaccgtca tgacgctacc gaccgcctgt
     3361 tggaaatttc cgaaaaatat cggggcgtaa aagtagaaag tgccgatgaa agtgccgccg
     3421 agtggcgaaa tttacctgtg gcagagcgtt taaaacacgc cctcgtaaaa ggcataacga
     3481 cctacattat tgaagatacc gaagaggctc gccagcaatt tgcctctccg ctggaagtga
     3541 ttgaagggcc gctcatggcg ggtatggacg tggtgggcga cctgttcgga gacggcaaaa
     3601 tgttcctgcc gcaagtggtg aaatcggctc gggtaatgaa acagtccgtt gcctatttag
     3661 agccgtacat caacgccacc aagcagaaag gatcgagcaa cggcaaaatg gtgatcgcca
     3721 ccgtgaaagg tgatgtacac gacatcggca aaaacatcgt tagcgtggtg ttgcagtgca
     3781 ataactttga agtgatagac ttaggtgtga tggtgcctgc cgatgtaatt atcgaaactg
     3841 ctattcggga gaaagccgat ctcattgggt taagcggact aattacccca tcgctggacg
     3901 aaatggagta ttttttaggt gaaatgaacc gcttgaagct cgatattccg gtgctgattg
     3961 gcggcgcaac gacctcaaaa gagcatacgg cgatcaaact ttatccgaaa tataactacc
     4021 ccgtagtcta taccgccaac gcttcacgtt gcgtaaccgt ctgtgcgacc ttgatgaacc
     4081 ctgaggcaaa agccgaattt tgggaaaaaa ccaaagccga atacgaagaa attcagcgta
     4141 aatttgccgt tcgcaaacca cttcgcaacg gtttatctat tgaggaggct cgagccaatc
     4201 gttttgacgg atttagtggc gaatgggcag actatgtgcc gccaacgcca aaacagaccg
     4261 gcattatcga gtacaaaaat gtaccgattg ccaccctacg caaatttatc gactggtcgc
     4321 cgttctttat gctctggggc ttaatgggcg gttatcctga tgcctttgat tatccggaag
     4381 gcggcgaaga ggcacgccgt gtctataacg atgcccaacg ggtgctggac gaatttgagc
     4441 aaaacggcaa gctcaaccca agtgggatta tgggcatttt ccctgccgtg cgtgagggcg
     4501 atgatattgc aattttaaac gaagatcgca ccgcttgtat cggcaaatcc taccacctcc
     4561 gccaacaatc cgaacgaggc aaaaacagca aaagcccgta caacctctgt ttaagcgatt
     4621 ttatcgccga ccgagaaagc ggacaacaag actggttcgg aatgttcgcc gtttgtgccg
     4681 gcattgaaga acactattta gttgaaagct acaaagcggc aggcgatgac tacaacgcca
     4741 ttttgctcca agccgttggc gaccgcttgg cagaagcaat ggcggaatac ctacactttg
     4801 agctacgcac caaagtctgg ggctacaccg tggaagacga agacaacgga cgcttaatcc
     4861 gtgaagaata catcggcatc cgccctgcgc ccggctaccc aagctgcccg gaacacaccg
     4921 agaaacagat aatttgggac ttgttagagg tggaacaacg catcggcatg aaactcaccg
     4981 aaagctatgc catgtggccg gcagcaagtg tctgcggctg gtacttcacc caccctgcca
     5041 gcaactactt cactctcggc aagattgatg aagatcaggt gttggattac gccaaacgca
     5101 aaggctggga cgaactcacg gcgaagaaat ggttaagtgt ggcgatgaaa caagatgtca
     5161 agtcgcaggc tgaaaacatt taatgtagtg gcgggtttta acccgcctgt tacaagcggt
     5221 tggttttgag ataaaatatg caaaatttat ctctctttta tgcaaagaag ttatcatcga
     5281 gaacaaaaca atgattgaaa aactaaatta tcacttagta caacttttaa aagacagtaa
     5341 ttatcaatta actcaatttt ctcctgcgta tataaaaaaa ttagaggaat ctattttcct
     5401 caaatcaggg aaaaatggag atattcctca tattcaatgt cttgttcgta aaaaggatat
     5461 taagctcaca cctgaagaag cagtacgcca actctattta atgaatttgc attatgaata
     5521 tgattatcca tttgaacgaa tggaattaga atattctgtt gtattcgggc gtgagaagaa
     5581 acgagcggat attgtcatct ttgatagaga taatcctaac gctgtctata ttatggtgga
     5641 gctgaaaaag ccgaaattaa aagatggtaa agaacaatta aaatcttatt gtaatgcgac
     5701 tggagcacct attggtgtat ggacaaatgg cgaaagtatt tcttactata atcgccgtga
     5761 tcctaattat tttaaagata ttcccgatat tccgaatgct caacaaaaac tttctgattt
     5821 attacaagaa cgttggacta ttcaagatct gatagataat gacaaaattg ccaaacaacg
     5881 taaatcattg aaagatcttg ttattgaaat ggaagatgag gtactggcga atgctggagt
     5941 tgatgttttt gaagagttat ttcaacttat ttttactaaa ctctatgatg aaatggaaag
     6001 tacacgcaat aaaagtcgtt atttagagtt tcgtaactat ggtgataccg aaagtgaatt
     6061 aaaggcaaaa attcaatctc tatttgatcg tgcaaaaaat aaatgggaag gcgtatttgc
     6121 tgaaagtgcc aaaatcaacc tttccccttc gcatttggcg atttgtgtat cttcattgga
     6181 agaagtaaag ctgtttaatt ctaaccttga tgtagtggat gaagcatttg agtacttaat
     6241 taataaatcc agtaaaggag agaaaggaca atactttacg cctcgttacg tcattgatat
     6301 gtgcgtaaaa atgctcgatc caaaacctga agaaacagtc attgataccg cagcaggaag
     6361 ctgtggtttt ccagttcatt ctatttttca cgtttgggaa aaacaactta aagcgagagg
     6421 attagaacgc tcacacttat ttactgctga agaaaaattg cctgaacaaa cagattatgt
     6481 gaaagaaaaa gtctttgcga ttgatttcga tgaaaaggca gtacgtgttg ctcgtaccct
     6541 aaacttaatc gcaggagatg ggcaaaccaa cgtactacat ttaaatacct tagattatga
     6601 acgttgggaa gattttacta aggaagaaga atggaatgat gtatatggag aaggctggaa
     6661 aaaattaaga aaattacgta aaactaaaaa tgaaaatcga gatttccaat ttgatgtgct
     6721 aatggcaaat ccgccttttg ccggtgatat taaagaaact cgtatatgag ctcgctatga
     6781 attaggcaaa aatagcaaag gaaaacagca atccaaagtc ggacgagata ttttatttat
     6841 tgaacgcaat ttagatttct taaaagacgg tggacgaatg gcgattgtgc taccacaagg
     6901 gcgttttaac aattccagcg ataaatatat tcgtgatttt attgcagagc gttgccgcat
     6961 tttagctgtt gtgggcttac acggaaatgt gtttaaacca cataccggca caaaaacttc
     7021 cgtactattt gtgcaaaaat ggcacgatga actttgcccg aaagtagagg attacccgat
     7081 tttctttgcc acaatgcaga aatccagcaa agataattca ggcgataaaa tctatgttaa
     7141 aaacgctgat ggcacactca aattagacaa ccatcaacac ctaattgtgg agcacgatct
     7201 atttaatcac gataatagta cccaagacgg cattgcagaa gcctttattg aatttgctaa
     7261 aaaagaaaag ctctcttttg tgggaaagga ttaagcccat ttgaccctgc taaatatcag
     7321 gcattgttag atgggctaga ggtgagcgag gtttatttga gtaaggttcg ttctgcaagt
     7381 tattcggaac gaatggatag tactttcttt ttgaaaaaat acttaaacca tccgagtttt
     7441 aattttccat tatcgctgaa tgaggtttct ctgattaaaa gtggtacaac accaacagat
     7501 cgagatgata acttaaaaga gggggttgtc ttattaaaaa ccaatgatat taggaataat
     7561 ctattaaata agtactcttc ggtagattat tttattagcg aagatatcaa tgagaaaatg
     7621 atttcatcac aactgaaaga aggggatgtt ttagtaaata tcgttggtgc aactttggag
     7681 gttgttggtc gggtagctta tgttagtagc acttttccaa aagcaaatat tacacaagca
     7741 atgtcttttg taagattaaa atcaaaatat aataaagaat tattaccaac gtatttattt
     7801 gcttttttac aaagttctta tggaaaaatc caaattaacc ggaatgcacg tccaacagga
     7861 caatacaatc tgaataatga ggagcttggt gcgattaaag tccccttaat tgatctagaa
     7921 acacaaaagc aggtagataa aatcattaag caaagtaatg attttgtaca aaaatcaaca
     7981 caaagttacc aagaagctga aactttatta ttagaaaatc tcggtttgag agcttttcaa
     8041 gctgatagca atcctgtaaa tgttaaatcc ttaaaagaga gtttcttaca aacaggacga
     8101 ttagatgcag agtattatca aactaaatat gagcaatact ggaatttaat tcaatcgcaa
     8161 gattatgttt ttattcgtga tgaatattta catatcaccc aaaaacctga ttggacaaaa
     8221 ccgatgtatc aatatattga aattggtgat gttaatattg gtgatggttc atatcaaacg
     8281 aattggatag agacacaaga attacctgct aatgctaaaa ctcaagccca aacaggtgat
     8341 attttaattt caaccgttcg cccttatcgt ggtgcagtaa caattatcgg tgaaaatgat
     8401 caagatttag ttgttagtgg tgcgtttaca gtattacgca gaaaggaaaa ctctgttttt
     8461 aataatgaag ttttaaaggt gctattacgg tcagaactat ataaagattg gttactacaa
     8521 tttaatgtag gtacgagtta tcctgtaatt aaagataacg atattttgaa tttaccaatt
     8581 cctaaaataa gtggagaaat ccaagaaaaa attgctgaat atatccgcca aagcaacgat
     8641 ttaaggcagc aagcacaaaa tttactcgct caagctaaaa ataatgtaga gtttgaaatt
     8701 gaaaataatt catttaatat caatgagtta gaagtgcggg gggggggtag atcctgctaa
     8761 gccttatggt ttattggcga gatcttctta ttttgcacgt ttagcagaat ggactttatt
     8821 agaacattta cttgtcaaac agcctgaaaa tatttcggta tgttcattcg gtcaatcatt
     8881 cggtacaagc ggtcgtttag atgcagaata ttaccaacct aaatttgcaa gcttatttgc
     8941 acaattagcc aatttcaaaa cgatgaaatt aggtgagatt gttaatttac aaaaatcggt
     9001 agaaccgggc tcggaagctt atcaaacaga gggaataccc tttgtgcgtg tatcggattt
     9061 atctaaattc ggcatcagcc aaacagataa atacttacat ccgaaagatt ttggcaatgt
     9121 tgtaagacct aaaaaagaca gtatattact gactaaagac ggcacagtcg gcattgctta
     9181 ccgtgttccg caagatttga atgtgattac atcaggggca attgtgcatc tagagcttaa
     9241 aactgacgaa gttttacccg attatttggc gttagcattg aattctcctg ctgtacaatt
     9301 acaagcggaa agagatgcgg gaggctctat tatccaacat tggaaaccgt ctgaaatttt
     9361 agatgtagtg attccggtat tacctaaaaa tatccagcaa accattagcg acaaagtaca
     9421 acaaagtttt gcattgagag tagaaagtga agttttactg gaaaaagcta aaatacttgt
     9481 agaacaagaa atagaaaata tgaggtaata atgcctaatc ataatcaaga tttgaaaaaa
     9541 gagtggttta ataaagcaag gatagattac cactctcttt tttaatgtta tggctcagtt
     9601 gtaatagctg gtataacttc cattattcct taggt
//
LOCUS       DANLUT010000095         9537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLUT010000095 DANLUT010000000
VERSION     DANLUT010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(64..2256)
                     /gene="yccS"
                     /locus_tag="PXB38_001685"
     CDS             complement(64..2256)
                     /gene="yccS"
                     /locus_tag="PXB38_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL5353986.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLRRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGMCGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVTLSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNSLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLSIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSLAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLAQFEQENQQKQNDLSLVLIQQLRLIVQLLPQMQSLLKAEICHQ"
     gene            complement(2300..2758)
                     /locus_tag="PXB38_001686"
     CDS             complement(2300..2758)
                     /locus_tag="PXB38_001686"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL5353987.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFHQEVSVNVPDYDGYLAERLG"
     gene            2884..4158
                     /gene="thrC"
                     /locus_tag="PXB38_001687"
     CDS             2884..4158
                     /gene="thrC"
                     /locus_tag="PXB38_001687"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL5353988.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLGSIDEL
                     LDLPLVERSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVERILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4237..4971)
                     /locus_tag="PXB38_001688"
     CDS             complement(4237..4971)
                     /locus_tag="PXB38_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL5353989.1"
                     /translation="MSFKDMTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLP
                     GAFTPTCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPD
                     GNGEFTEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTM
                     IKYLSPNWTAKESVSIITKPGCPFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITG
                     KTSVPQVFIGGKHIGGSDELAAYFAK"
     gene            5086..5970
                     /gene="oxyR"
                     /locus_tag="PXB38_001689"
     CDS             5086..5970
                     /gene="oxyR"
                     /locus_tag="PXB38_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL5353990.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEDELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            5973..6605
                     /gene="fabR"
                     /locus_tag="PXB38_001690"
     CDS             5973..6605
                     /gene="fabR"
                     /locus_tag="PXB38_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL5353991.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(6632..6931)
                     /locus_tag="PXB38_001691"
     CDS             complement(6632..6931)
                     /locus_tag="PXB38_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL5353992.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(7020..>9537)
                     /locus_tag="PXB38_001692"
     CDS             complement(7020..>9537)
                     /locus_tag="PXB38_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5353993.1"
                     /translation="NVAAGDVNADSKDAVNGSQLYTFAMASREEVKSTDKSVTVNTTK
                     NADGANVFDLSVNTDDVTIVKDPTTGAIKANTTALNDANNDGRIDEPTADDAKKLVTA
                     GDITNAINNSGFTLKTSAVEGGEKLSGGDELINPGKAVEMVAGKNLTVKQEADGKVIY
                     ATKDDVKFSSVTSNTVTVPTDEADPANNPITINKDGINAGNKAISNVASNLTPVTADD
                     KVQPADNNPTNLADKLSNAATLGDVLNAGWNLQGNGKAVDTVVHNDTVDFINGKGTTV
                     TVENKDGKNTIKVDSPIEFVNQDPTDSSTPSNTAKFTGEAPVQLGNVASSVRNEDGST
                     PEGKDRAEAIKNAEGDKLNNVVNLGDLQAATNAATTKVGGNRGVTITPSTNADGSTTY
                     NVEAKTDGTTIKVDNEGNITANTSELGNNEDGTVKAPTQPNALVTAQTVADAVNNAGF
                     NIKSAGNKAAGDQAATKLVKTGEEVVFEAGDNLTVKRDGNQFTFATAKDVSFNSVQFS
                     ENGPKITNDGDNIKVGDKDGKPTKITNVADGDISPVSTDVINGKQLNNYAKVNGNNIG
                     TDEDGSINIVNGNGTTITSDKAGEVKVNVNSTDLTVADNGKINVQDPNGTGSHFVNAT
                     TVANAVNNVSWNVDSKAVGTGVVEGDKAPAKVKAGSTVSVNAGNNIKVTRKGSDVTVA
                     VSDTPEFTSVKTGDTLVNNNGVTINNGSAGKAVSLTKDGLNNGGNRITNVKAGEADTD
                     AVNVGQLKGAVNHLNNKIHRNNREARAGIAGSNAAALPQVYIPGKSMVAAAGGTFKGE
                     NALAVGYSRSSDNGKLILKLQGNANSRGDFGGGVGVGYQW"
BASE COUNT         2735 a         2181 c         1817 g         2804 t
ORIGIN      
        1 ctacaaatta tataattaat acaaccgtag gggcgggccc tgtgcccgcc cgtgcttctt
       61 ctattactga tggcaaattt cagctttcag caagctttgc atctgcggta acaactgcac
      121 aatcagcctc agttgttgta tcaacactaa ggaaagatca ttttgttttt gctgattttc
      181 ctgctcaaac tgggctaggt cttggtcgat agcggtcaat ttttccgata attttgcaaa
      241 tgaacggctc tctgaggcga tttgcccaat gatgtttgcc acctctctgg cgagtgagaa
      301 gaacattgcg gaaaaatcca cttgttgatt aatctctcgg ctagcaatac ggtaagcccc
      361 taaggtggaa atataaccca gcaaggtgta agcaatactt aacaatttcg gggcgaaggt
      421 taaatcgttc gcatattttt gtggttcgct gtacatattg gtaattgcat tactgagtgc
      481 cgataaatgg ttatgcacat cacggcgtgc aatgcggtaa ggtagttgct cgttataacc
      541 aaactgcaac tgggcaataa tatggcgtaa atattgtcca ctagctttca agctattatg
      601 taagttgcgt tgcaaattta aatatttcca atccggccat aagaatgcta ccgccaacca
      661 cgcaatcgca gtgccgagca aagtatcgag cattcgcatt aagatgccgc tttcaaggct
      721 cacgcctgca atatcaaggc ttatcattac caacaccgta atataaaagg ttgaaaagcc
      781 ataatgtacc aagcggaaaa aggtatagag cgagccggtc agtacgatta gcccaagctg
      841 ggcttccaga ctgagcgtta cgttaaacaa ttcaaaagag ccaccgacca gcacgccgaa
      901 aatcgtgccg attacacgct gaatcagtcg ggtcttagtg gcggtgtaat tcggttggca
      961 gacaaaaatc gccgtgagca aaatccagta acctttgctg tcgaagccta aaatcggcac
     1021 gatcgcactg cacaacagca ccactatcga cagccgaacg gcgtggcgaa acagttggga
     1081 ttcaaaggtt aaatgggctt taatcgcttg gctgatattg cttaagccgg taatattttc
     1141 ggcgatcaag cggtgagatt tggtgaaatt tttgcttaac ggctcaatat gctcaccact
     1201 gcttgagcct tgttcaatct gagctaattg ccgttcaata ttgcctaaat tttctgcaat
     1261 agcacgccaa cgataggcac ttttcaagcc cctttcttgg tgataattta atgagttaag
     1321 taacccctgc aaggcttttt cgccacacat accgtgttca tatacttccc tatggcgtaa
     1381 cgacatcgca attttttgac acgccgccgc ctgtaattcc aatacccgtt gaaagcgaaa
     1441 cattaaatca ctgttgctta attgttgaaa cagctcgtga tattgataat ggctggagct
     1501 tgcccgctct aaaatatctt gagcggtgaa atagtaacgc agcattcgct gtgtccgttg
     1561 ttgcttgtgc tgacgtctta ggcggtagaa tagggcgact ctggttttat caaaagcagc
     1621 catcacctcg ctattggctt tcgccaaagc taactgtttc gcagctaaat cgtcatcatc
     1681 ggggtcaaaa taggcagatt tcgccagtaa atagtggctc aatgcaaggt aggcggacgc
     1741 taaattctcc tgtacagtgc gattcggaaa aatcaggtaa accaaaatac cgaccaaacc
     1801 atagagtaag gtgccaagta agatcatcac cacattgtga taccacaata cttcgggcgt
     1861 ataagccagg ctgttataaa ccgccacaat cagcgtgcca aaagcaatgg tactatagcg
     1921 ttgcccgatt gcccctaaca ttaccagcaa aaaggtgcaa accaccgcca ccggcacaaa
     1981 cagccagccc aaatggagcg acacactcgc cccaatcgag gaaagcgaga acgccactag
     2041 gctgataatc agatttttcg ctcgtccgat taggctgttg tctaaatcca ccaaaccgcc
     2101 ggcgataatg cctaacatca acggcatcgc aaaatcagaa ataccgagtt gccaaatact
     2161 aaccgctgca atattcagcg aaataaacat aggcagcgtt ttaattacat tttccgaaag
     2221 ccaactgtgt tgtagatatc ttaaaaattt attcatattt gctcatttcg ggcaggcaca
     2281 gaacctgccc ctacctacac taccctaaac gttctgctaa atagccatca taatccggca
     2341 cattcacgct gacttcttga tgaaacaaat ccgcatttaa cagaaaatta gcggtagttt
     2401 cgttaatcgc caccggaata ttccaaacgg tcgcaatccg catcagggct ttcacatcag
     2461 gatcgtgcgg agcggcattc atcggatccc aaaagaacac cagcagatca attttctttt
     2521 ctgcgatcag cccgcctaat tgctgatcgc cccccatcgg gccgcttaac aatgaagtaa
     2581 tttcaagccc tgtttctctg gcgagcaaat gcccggtagt gccggtggca tatagcttat
     2641 gcgaggcaag ttgggcttga tgagtttgtg tccaacgaat taaatcttgt ttacagctat
     2701 cgtgagccac taaggcaatc tgtttttgtt ttgcgatggt tctgacggtg gttttcattt
     2761 ttagctcctt tgcaaaattt ttcacaaatc ataccgctta tttttcgctt ttgcattgac
     2821 taatcacggc ttatggctaa aatcaggtaa aaattcgcat tttaaaacaa aggattaacc
     2881 gcaatgaact tatacaacat caaacaccct gaagaacaag tcaatttcgc ccaagcggta
     2941 cgccaaggct taggcaaaaa tcaagggcta tttttccctg aagtgttacc taaattaggt
     3001 agcattgatg aattattgga tttacctttg gttgaacgca gccaaaaaat tctttcagcc
     3061 ttaatcggcg aagagttacc gcaagaaacc ttaaatgcaa tggtaaaaaa tgcgttcact
     3121 ttcccggcac cgcttgccaa agtcaatgat gatatttatg cgttagaatt atttcacggt
     3181 ccgactttag ccttcaaaga ttttggtggg cgctttatgg ctcaagcctt agccaatgta
     3241 cgaggagacg gcaaaattac tattttaacc gctacctcag gtgacaccgg tgcggcggtg
     3301 gctcatgctt tctatggttt ggaaaatatc aacgtggtca ttctttaccc gaaaggcaaa
     3361 atcagcccat tacaagaaaa attattctgt accttaggcg gtaatattcg cactgttgcg
     3421 attgaatccg actttgatgc ttgccaagcc ttagtgaaac aagcctttga tgatgccgag
     3481 ctacgccaag cgattggttt aaattccgca aattccatca acattagccg tttactggct
     3541 caaatttgct actactttga agcagttgct cagttaccaa aagaaaaacg agataacgta
     3601 gtggtttcag taccaagcgg taatttcggt aacttaaccg ccggcttaat tgccaaaaca
     3661 ttaggtttac cgattaaacg ttttattgcc tcaaccaatg ccaatgacac cgtgccacgc
     3721 tatttacaat caggcaaatg ggaaccaaac gcaaccgttg caaccctttc taatgcaatg
     3781 gacgtaagcc gcccgaacaa ctggccacga gttgaagaat tatttaaacg caatggctgg
     3841 agtttgtctg aattgggttc tgccgcatta aacgatgccg aaaccgaagc ggctttgaaa
     3901 gctcaatatg cagaaggtta tctgtgtgag cctcacggtg ctattgctta ccaaagcttg
     3961 aaagatcagc tacaacaagg cgaaaccggt attttcttat gcaccgctca cccggcaaaa
     4021 ttcaaagagt cggtggaacg cattttagcg attgaattgc cgttaccgga agcattagat
     4081 aagcacaaca aactgccact gttatccgat gaaatggcag cagattttgc aacattgcgt
     4141 gcatatttgt tgaaataaat attcaataat agaaaaggga ttaagtatta aacttaatcc
     4201 ctctttttat gcattacaag cggttatatt tgcctattat tttgcaaaat aagcagctaa
     4261 ctcatcacta ccgccaatat gtttaccgcc gataaatact tgtggtacag aggttttacc
     4321 tgtaattgct cgtacagaaa tcgtgcttgc atcacgacct aacacaatct cctcaaaagt
     4381 atagccttgc tcttttaata atgcttttgc ttttgcacag aacgggcaac ccggtttagt
     4441 gataatcgaa acagactctt tagctgtcca atttggactt aaatatttaa tcattgtatc
     4501 ggcatctgat actttaaacg gatcgcccgg ttcttgtggc tcaataaaca ttttttccac
     4561 aataccgttt ttcaccagca tcgaataacg ccaagaacgt ttaccaaacc caaggtcatt
     4621 tttatcaact aatagcccca taccttctgt gaactcacca ttaccatcag gaataacagt
     4681 aatattttca gattcttgat ctgctttcca agcgttcatt acaaaggtat cattaactga
     4741 catacagatg atatcatcta cccctaatgc cttaaattca caagctaatt cattatagcg
     4801 aggcaaatgt gttgatgaac aagtcggtgt aaatgctccg ggtaatgaaa acacaaccac
     4861 cgttttgtta ttaaataact catcggttgt gacatcaacc caagcatcgt tttgacgtgt
     4921 acgaaatgtt acactgggta ctttctgacc cgtcatatct ttaaaagaca tattaatgtt
     4981 ctcctataga attatatatt ataaaaatct taggcattat actcacaaat atggcataat
     5041 tcagcctatc ggaacaatag gaaaaattta aattggagga atcaagtgaa tattcgagat
     5101 ttagaatacc ttattgcact tgcagaacat aagcatttcc gtcgtgcagc agaatcttgt
     5161 aatgttagcc aacctacttt aagcgggcaa attcgcaaat tagaagacga actaggcact
     5221 attctgcttg aaagaaccag tcgcaaagtc ctctttacgc aagcaggctt aacattagtt
     5281 gaacaagcca aggtagtttt acgtgaagta aaaattctaa aagaaatggc aagcaaccaa
     5341 ggtaaagaga tgtctggccc gcttcatgtt ggtgtaatcc caaccttggg gccttacatt
     5401 tcgccaatta ttgtgcctgc attaaaagca gaatttgcag atttagagct gtatatttac
     5461 gaattacaaa ccaaccaatt attagatcaa cttgaatccg gccagcttga ttgtggcatt
     5521 atctcatttg taaaagagag tgaatctttt attgaagtgc ctatctttaa tgaagaaatg
     5581 tacttggtag ttccagaaca acacgaatgg gcagcgctta aaaaattcga tatgaattta
     5641 ttaaaaaacc gtgagttgct ctttttagac agtggccatt gtttacgcac taatacgcta
     5701 gactattgtc tatccattgg agcaaaagaa aatccacact ttaaagctac caaccttgaa
     5761 accttacgca atatggtagc agcaaatgtt ggcctagcat tgattcctaa attagccgct
     5821 aaaccgatta aaggagtaca ttatattcca cttgaaaacc cgaaaccgtt tcgagctgtg
     5881 ggaatggtgt atcgaccagg ttcaccatta cgcgcccgct atgagcgttt agctcaagcc
     5941 attactaaaa ttatgcaatc cgaggcgtaa aaatggcaaa cggtatgagt gtgcgcgcaa
     6001 ttcagaaaga aaaaacacgc agagcattag tagaagccgc ctttaatcaa ttaagctcag
     6061 aaaaaaattt ctctaatctc agtttgcgtg aagttgcgcg tgaagctgga gtcgcaccga
     6121 cttcgtttta ccgccacttt aaagatatgg acgaactagg cttagcaatg gtggacgaat
     6181 ccgggctact attacgccaa ttaatgaggc aagctcgaaa acgaattgca aatggcggaa
     6241 gtgttgtcgt ggtttcagtg gaaacattct tcgaactgat tgccgaccgc cctaacgttt
     6301 tccagctatt actacgcgaa agctccggta catcgcaagc gtttagaacc gcagcatcac
     6361 gcgaaattca acattttgta gctgaattgg cggactatat tatgagcaaa gataatcaca
     6421 gtaaccgaga acttgcttat attcaatcgg aaggtttagt cacgctagta tttactgccg
     6481 gttctcatgc tttggatatg aacaatcaag aacgggaaaa actaaagcaa cgtgtcatta
     6541 tgcagctaag aatgctgatt cgtggctcca cctattatgc caataaacaa gcttcatcaa
     6601 cataaaaaaa cagacgccta agcgtctgtt tttattcttt cgtaatatat gcagtcgata
     6661 gctttaacca ttctagtgct aattgatgat gttcagataa cgcattccat aacgcatctt
     6721 ctgacaagat actataattg cctttagtat ctaactgttc atcaaaacta tcatgtaatt
     6781 cacgccattc cgggctagca taaaaccgac ttaagggttc caaaagtgca gaagctcgtt
     6841 tccattgctc aatccccttt tccaattctg gtaatagctc tacccattgg ttataacaat
     6901 cctgcatttt ctgaatatct gcttttttca ttctttaccg cttacaccat aaattttagc
     6961 ctcaatataa cataaaaatc cccttccgaa gaaggggatt tcaactcaat taggctaaat
     7021 taccactggt atccaacgcc tacaccgcca ccaaagtcgc ctcggctatt cgcattacct
     7081 tgtaatttca agataagctt accgttatca cttgaacgtg aataacctac tgcaagcgcg
     7141 ttttcacctt taaatgtacc acctgctgca gccaccatag atttacctgg aatgtaaacc
     7201 tgcggtaacg ctgctgcatt tgaaccggca ataccagcac gggcttcacg gttattacga
     7261 tggatcttgt tatttaagtg attaacagca ccttttaact gaccaacatt aacagcatcg
     7321 gtatctgcct cacctgcttt aacattagta atacggttac caccattatt taagccatct
     7381 ttcgttaagc ttaccgcttt tcctgcagag ccattattaa tggttacgcc attattgttc
     7441 accaatgtat caccagtctt aacgctagta aattcagggg tatctgaaac ggctacagtt
     7501 acatcagaac ctttacgtgt cactttgata ttattacctg cattcacgct cactgtacta
     7561 cctgctttta ctttcgcagg ggctttatcc ccttcaacca cacctgtacc aactgcttta
     7621 gaatctacgt tccagcttac gttgtttacg gcatttgcta ctgttgttgc attcacaaag
     7681 tgtgaaccgg taccgttagg atcttgaaca ttgattttgc cgttatcagc aacggttaaa
     7741 tctgtgctgt ttacgttcac tttcacctca ccagccttat cactggtaat agttgtacca
     7801 ttaccattta cgatattgat agaaccatct tcatcagtac caatgttatt accattcact
     7861 ttcgcatagt tgttcagctg tttaccgttg ataacatctg tgcttactgg gctaatatcg
     7921 ccatctgcta cattagtgat cttagttggt ttaccgtctt tatcaccgac tttgatgtta
     7981 tcaccatcat tagtgatttt cggaccattc tcactgaact gtacgctatt gaagctcaca
     8041 tcttttgctg tcgcaaaagt aaattgatta ccatcacgtt taacagttaa gttatcacct
     8101 gcttcaaaca caacttcttc gcccgttttc actagcttag tcgcagcttg gtcaccggca
     8161 gccttattac ctgcagattt aatattaaag cctgcattat tcactgcatc tgcaacagtt
     8221 tgagcagtca ctaacgcatt tggctgagtt ggtgctttca ccgtaccatc ttcgttgtta
     8281 cctaactcac tggtatttgc agtgatgtta ccttcattat ctactttaat agtagtaccg
     8341 tcagttttcg cttcaacgtt ataagtagtt gaaccatcag cattcgtgct aggtgtgata
     8401 gttacacctc ggttaccgcc cactttcgta gtagctgcat tagttgccgc ttgtaaatca
     8461 cctaagttca ctacgttgtt tagcttgtcg ccttcagcat ttttaatcgc ttctgcacgg
     8521 tctttaccct ctggggttga gccatcttcg ttacgaacac tacttgccac attgcctaat
     8581 tgaacagggg cttcacctgt gaatttagcc gtattgcttg gcgttgagct atcagtagga
     8641 tcttggttta caaactcaat cgggctatct actttaatcg tattcttacc gtctttgttt
     8701 tcaaccgtga ccgttgtacc tttaccgtta ataaaatcaa ccgtgtcatt atgtaccaca
     8761 gtatcaaccg ctttgccgtt accttgtaaa ttccagcctg catttaatac atcacctaat
     8821 gttgctgcat tacttaactt atcagctaag ttggttggat tattgtctgc tggttgaacc
     8881 ttatcatctg cagtcacagg tgtcaggtta gacgcaacat tgctaatcgc tttattacct
     8941 gcattgatac catctttatt gatagtaatt ggattatttg caggatctgc ttcatcagtt
     9001 ggtacagtta cagtgttaga ggttacgctg ctaaacttaa catcatcttt agtcgcataa
     9061 atgactttac catcagcttc ttgcttcaca gttaagtttt tacctgcaac catttcaact
     9121 gctttacccg gattaatcag ttcatcacca cctgaaagct tctctccacc ttctacagcc
     9181 gacgttttca acgtaaagcc tgagttattg atggcgttgg taatatcacc tgctgtcact
     9241 aatttcttag catcatcagc ggttggttca tcaattctac cgtcattatt tgcatcattt
     9301 aatgccgtag tgttagcctt gatcgcaccg gttgtaggat cttttacaat tgttacatcg
     9361 tccgtattca cagaaagatc gaacacattc gcgccatcag cattttttgt cgtgttaacc
     9421 gtaactgatt tatcagtcga cttcacttct tcacgagatg ccatagcgaa agtataaagc
     9481 tgactaccat ttactgcatc tttactatct gcatttacgt caccggcagc tacatta
//
LOCUS       DANLUT010000096         9465 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLUT010000096 DANLUT010000000
VERSION     DANLUT010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9465
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..373
                     /locus_tag="PXB38_001693"
     CDS             <1..373
                     /locus_tag="PXB38_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5353994.1"
                     /translation="FALVQAELKYSGSNIPSEYSKFNLENVLIDFPNKTNSVAYQNLV
                     IHNAKTRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQVRCHLVHGSLSPTPE
                     NHEVVKYCYLILWDCLKGFCD"
     gene            complement(590..1339)
                     /locus_tag="PXB38_001694"
     CDS             complement(590..1339)
                     /locus_tag="PXB38_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5353995.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLSP
                     EQERQKVRSVAEQLAISHLLDNTYQCLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLANGNTQAVLTAE
                     NIATAFGVKAEMDWEKREMWGIEKLEMNFQF"
     gene            complement(1336..2304)
                     /locus_tag="PXB38_001695"
     CDS             complement(1336..2304)
                     /locus_tag="PXB38_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5353996.1"
                     /translation="MKKLNIVLGSLLLLIVSSAAFYQLGDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFQNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWAFPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGAPFLIWILFTQQRRLAQ"
     gene            2485..2822
                     /locus_tag="PXB38_001696"
                     /pseudo
     CDS             2485..2822
                     /locus_tag="PXB38_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            2803..3126
                     /locus_tag="PXB38_001697"
     CDS             2803..3126
                     /locus_tag="PXB38_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5353997.1"
                     /translation="MNELYDDPIPQATREKYGITEFDAAEYLTNDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3116..5002)
                     /locus_tag="PXB38_001698"
     CDS             complement(3116..5002)
                     /locus_tag="PXB38_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5353998.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLHLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5032..5832
                     /gene="metF"
                     /locus_tag="PXB38_001699"
     CDS             5032..5832
                     /gene="metF"
                     /locus_tag="PXB38_001699"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL5353999.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5881..7041)
                     /locus_tag="PXB38_001700"
     CDS             complement(5881..7041)
                     /locus_tag="PXB38_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354000.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLSLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7101..8117)
                     /gene="galE"
                     /locus_tag="PXB38_001701"
     CDS             complement(7101..8117)
                     /gene="galE"
                     /locus_tag="PXB38_001701"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL5354001.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHIYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWKTERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8205..8366)
                     /locus_tag="PXB38_001702"
     CDS             complement(8205..8366)
                     /locus_tag="PXB38_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL5354002.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8344..9345)
                     /gene="lpxK"
                     /locus_tag="PXB38_001703"
     CDS             complement(8344..9345)
                     /gene="lpxK"
                     /locus_tag="PXB38_001703"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL5354003.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PVLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLSQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9347..>9465)
                     /locus_tag="PXB38_001704"
     CDS             complement(9347..>9465)
                     /locus_tag="PXB38_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5354004.1"
                     /translation="QLIISHKDELLAHKEEIIENQKRELALLRDLVETLKNK"
BASE COUNT         2593 a         2043 c         2124 g         2705 t
ORIGIN      
        1 ttttgcatta gttcaggcag agttaaaata ttcaggtagc aatattccaa gtgaatattc
       61 taaatttaac ttggaaaatg tgcttattga ttttcctaac aagacaaatt ctgtagcata
      121 tcagaatcta gttattcaca acgcaaaaac gcgtgcagga aaattaaaaa cacaatatgc
      181 aaatgctcac gatttaggca atttggtttt agtagaggat atccaaaaaa tattttccgg
      241 gttattagaa ataatttatc aagttcgttg ccatttggta catggtagct taagtccaac
      301 acctgaaaac cacgaagttg ttaaatattg ctatttgatt ttgtgggatt gtttaaaagg
      361 attttgtgat tagttattgt caataaagct acaagcggtc aattctccca aaactttgca
      421 aatttccccg caaaactgac cgcttgttct cctctatcca ttcacctcaa ccaacttttc
      481 tctctacccc tactcaaaat cggttaaaca atctgttgag gtaaatgttg tgtcggaatg
      541 ggatttaatc ttaatgaaac tgaaaaaatc ttctgccaag caaatttccc taaaattgga
      601 agttcatttc caatttttca atcccccaca tttccctttt ctcccaatcc atttcagctt
      661 tcaccccaaa agccgttgca atattttcgg cagttaagac cgcttgtgtg ttgccgttgg
      721 cgagtaaatt accgttttta agcagaatga tttcatcgca aaaacggtag gcaaggggca
      781 gatgatgaat caccaccacg caggtctggg ttggggtgag ggctttgagc tgctgcataa
      841 tgtcgatttg gtagtagggg tcgagggcgg caatcggttc atcggcaagc aagatcgggg
      901 cttgtttcat caaacaacgg gcgagttgca ctcgggtctg ttcaccgccg gaaaggcatt
      961 ggtaagtgtt atccagcagg tgagaaatcg ccaactgttc ggcaaccgaa cgcacctttt
     1021 gacgctcttg ttcgggcgaa agcggtgcgg gcaagccgag tgctatcaca tcatataccg
     1081 aaagttgcca cgccacgttg agctgttggg caaggtaggc aaattgtcgg ctccgttcaa
     1141 cggcggaaag ggcgtgcagt ttgcaatttt ccagccaaat ttcaccgctt gtcgggcgta
     1201 gaatgccggc aatcgctttg agcaacgagg atttccccgc cccgtttgcc cccataatgc
     1261 cgatcaattt gccttttggc agatagcaag agaggtgttg aataccgtga gcaagggtga
     1321 ggttttcaat cttgatcatt gtgccaatct ccgttgctgg gtgaataaaa tccaaatcaa
     1381 aaacggtgcg cccaaaatcg ccgtgagcgt gccgatgtaa atgcgggcaa aaaacggcac
     1441 atattgcacc gctagatctg caatcagcag taacaacgcc ccgattaaag cggaggtgag
     1501 gtaaagctga gacggtggtt ttttcagcca aatacgggca agatgcggag caattaagcc
     1561 gataaaaccg atagtgccgg tttgtggaat agttgctccg accaacagcg ccacgccaat
     1621 gctaacggta aaaaaactgc gttgcaggtt gatgcccatt gttgcagcgg tctcttcgcc
     1681 gaaggttagc aggtcgagat aacgccgttc ccgatagagg cagacaatgc cgagcaagat
     1741 caaggggaac gcccaacata ctgcctctgc ggttgcccag actaatgagc cttgtaacca
     1801 gcggtagagt tccgccaacg cccacgggct ttcggcattg gaaagtagta aagtcaccgc
     1861 tgccccgagc aacacgttta ccgccacgcc acttaaaatc atcattgtag tgccgtggcg
     1921 aaagctaatc agccacacca gcaaaaacgc ccccaacgca cctgctacac cgccaaacag
     1981 tagccagccc atcggggctg aaaaatagta gagcagaaac acgctcaccg ccgttgcccc
     2041 cgaactgctc ccaagcaaac cggggctggc aagcggattt tgaaacacgc cctgcatcgc
     2101 attaccggca agcgcaaggc tggcgcccgt cagcaccgcc aagccgatac ggggcagtcg
     2161 aatttcgccc agcaccagcc agcgcagatc gcttagcacg ccttcggcat tttttagcaa
     2221 ggcaaaatcg cccagttggt aaaaggctgc gctgctaaca atcagcaaca acaagcttcc
     2281 aagcacaatg tttaatttct tcattcttct ttctctcatc aaacgtgcag attataccat
     2341 agcgccaaag tcaagctgaa aacgctattt ttgcgatcgc catcgaaaaa atagcgtttg
     2401 ccgaatgtaa cccacgacag gctttgctat attccttcaa tcagcctaag ttttgtattt
     2461 aaaacattac agattggggg tagaatgtac catattgaac gcactgaaat tttcgaccaa
     2521 tggcttgaaa atttaaaaga tccacttgct gtggtgacca ttgcaagacg tattgaacgt
     2581 gccgaaagcg gaaattttgg cgataccaaa tatatcgcag aaggaatttc cgaaatgaga
     2641 ttaaacgtca gcaaaggtta tcgcctttac tatgcacaaa aaggtagcat tatttatata
     2701 ctactaaatg gaggatataa aggcacgcca agctgatatt gataaagcat aaaatgctat
     2761 gggcagaaat taaacagcat atggcagaac aggagaaaaa gaatgaacga attatacgat
     2821 gacccgattc cacaagccac tcgtgaaaaa tatggtatca ccgaatttga tgccgccgaa
     2881 tacctcacca atgacgagct aatcgccctt tatttggcgg aaacattgaa agacggcacg
     2941 gacgaggagt ttattcaggc attgaatacc gtggcacgag cgaaaggaat gaatgagtta
     3001 gcgaaaaaag cagggatcgg gcgtgaaagt ttgtatcaaa gcctttccag cagtaagccc
     3061 cgttttgaga ctatccgcaa aattattagc gcattaaatt tggagttgtc ggtcgttaag
     3121 gcgtaagttt gtgcattaat tgtatcccct gccaaacccc gtggtcgaaa cagtaggtgt
     3181 atttcatcgg taggacaagc ggtggatttt ggctcatttt ttgccatatt ttttgtaatg
     3241 ctgggtgttt gagcagttcg gcttggttgt tatagctttg gttatcggtg aggaacaata
     3301 actgtttggg ttgcgctaac agcagttttt ccagcgagaa attctgtggc gtgaggtcgc
     3361 tttttaatgg cgatagaccg agaagatgca acaacgtttg atattgcgga aaatgcggtt
     3421 cgatcatacc cgtttcgctt agaattaaag tttcagcaag cggttgtttt agcggaattt
     3481 tttgcaaacg tagccgttcc accagctttt ccgctttggc ttgattttgg gttagctcgc
     3541 ccagttgtaa aatcagtgtg aaaagctgtt cgggtgtttg cggactgtcg tttaatgcga
     3601 ctaacttaaa gccaagctgt ttcagccgtg cggtgagttg cggatagaag gtttcattca
     3661 gtaaaatggt gctgtcggca tagggcaaca gggcggtgag ttcaggctca acggtgggct
     3721 tgtccgtgtt cagtttatcc aacatcatca acggcttttg ggaatagggc gacatcgccc
     3781 gaatttgctg tggttcggca agttccagca acagacggtc gctacacaaa tttggcgata
     3841 aacggtaagc tcctgaaata cgcccagtga tagaattttt aaactgtgaa ttatcggtgt
     3901 aacggccact aatagaaaaa ctgtgatctt gttcggtaaa taagcgatat tctagtgccg
     3961 cacttttttc ggataaggtt ttttcacgca aatatttatc agaggtatag cgtgtttttg
     4021 cataatctgt cagtaaactg accgcttgtg tcacttctcc ttcacggtca aagtttacat
     4081 ctaattgata attcgcatta agttgttttt cgttgctgta gcgagcattt gaaccgaaat
     4141 gtgttgcttt actattgaat tggctgatat ttgcttggtg tttcagcagc tcttgttcat
     4201 ttccccaata accgcctaat ttaaaagttt gattgcgagt acgggaatat tcaccgctaa
     4261 cgtctgaatt atagccatca atatgaacgg tttgggaaga ttgagcggca agaacttcta
     4321 cccctttgtt accgaggtca taacctaaac gtaaagagcc gttatcacga tgaaagccat
     4381 ctcgttcgct tgcaccaccg gttttcactt ctgagcctgt ttctgtggta tagctgaaat
     4441 ggtttttact cagtgcggaa atgcctttgg tacgatggct atcaccgtgt aaggcatagt
     4501 agaaaccgtt gtgaaatccg gaaagtgttg cgctggcatc acgggtatta tttgagccta
     4561 aaccaagatc gacctccgca ttgaatggtt tctctttgta taaaccgctt ttagtggtga
     4621 tataaactac accacccata gcactgcttc cccaaagggc ggattgctcg ccacgcaaca
     4681 cttcgatacg ttcgatattg ctaatcggta agccaccaaa atcgaaattt ccaatattaa
     4741 tcggattgac ttttacaccg tcaatcacaa ccgcagtatg gcgagattct gcccctcgta
     4801 aaaataagct agtaagagta ccacgcccac cttgttgccc aatcgccacg cccggcacag
     4861 tctttaacac atcactcaca taagtcgcat tgcgtgcggc aaaatctttt tcggtaagaa
     4921 ccgtcacgct ggaagcggtt ttgtcttggt tgattggggt tgcataggcg gaatagactg
     4981 ttacggaatc aagctgagtc atctcatttt gtgcaaaagc tgtacttgct agtgcaacag
     5041 aaatggcgaa tgctgtggga ttctattgat cgcctaagtc ctttaaaacc gaaatttgtt
     5101 tcggtaactt atggagcaaa ttctggtgag cgagatcgta cacacagtat tgtgaaatca
     5161 atccaagaaa aaacagggat catttcagct ccgcacttaa caggcattga tgcaacaccg
     5221 gaagaattaa aggtaattgc caaagattat tgggatagtg gtattcgccg aattgttgct
     5281 ttgcgtggcg atataccgaa aggttatgat aaagcactat tttacgcctc agatttagtc
     5341 gctttattaa aatcagtagc agatttcgat atttccgtgg ctgcctaccc tgaagttcac
     5401 cctgaagcaa aatcagcaca ggcagattta cttaacttga aacgtaaaat cgatgcgggt
     5461 gcaaaccacg ttattacgca attctttttt gatgtagaga gttatttacg ttttcgtgat
     5521 cgctgtgttt ctattgggat tgattgtgaa attgtgccgg gtattctgcc ggtgacaaat
     5581 ttcaagcagt tgcaaaaaat ggcagcagtg actaatgtta agatcccgac ttggatgggt
     5641 aaaatgtacg aagggttaga tgatgatcaa accaccagaa acttagttgc agcaagtatt
     5701 gcaatggata tggtgaaagt gctttctcgt gaaggggtga atgatttcca cttctatacc
     5761 ttaaatcgta gtgaactcac ttatgcaatg tgccatactt taggcgtaag acctgattta
     5821 acgactgcat aatcgaacat taaggctgta tagctaaatg agctatacct ccttatagtt
     5881 ttacttctct tcagccaccc aaatctcgcc attttttaat aataaatagg ctttgttgga
     5941 atcggctttg gtttgtttaa ttccagctgg cagggcggtt ggcaattcag tgatcttgcc
     6001 tgttttatcc aacacaacaa cttgttgata gcccatttgg ggtatcagtg cgaaagtctc
     6061 tgttgtcgcc actaaattgg tttcgtgatc accatagcgg tgattgctta agccggaggt
     6121 aataaaacgt tcagctaatt ggtttccttt caggctgtat tcaaccaaat tgccttttag
     6181 atgtggcatt tggattgcat agagcttgcg gttaaagata aacggcgatt gccaacggtt
     6241 agtcgacagc ggctcacttt cggcttctat tgataatttt ccgtctttaa cgccaatcac
     6301 aacagtgctg gccccattgc catcgccaga gataacagaa acgatcttgg tttttccatt
     6361 ttctgtgaaa gtcgcccagc ggttggcttc aaatactcgc ccttgttggg tgagtttttc
     6421 tgctaagggg tttagggtat ggcgttctag aaattgaatt tcgcctgcct ctacatcatc
     6481 gcctaataca ccgtgttgat atgtaaaatc atcaggcttt gcaagtacag caatatgccc
     6541 ttggttaggt gtttcggcat caaaatcaat ttgcagaggg tgagcatcag gcaacacctc
     6601 ggtttctgcg gtggcagtaa tagtggcttg gtttccttgc gtttcaattc tggctaactt
     6661 aaattgtccg ttttgtttgg tcacggcaat ggtggcaaaa ttaagggcgg tcattgtagc
     6721 tttcggggca aggggaatgt tggaggtata gattttatca gccgtccaca gcataaaatg
     6781 cccgttttga tccgctaacg caattcgttg gtattgagct ttaggttcaa tctcggtgga
     6841 aactccatct gccagttttt gagcttgttg tgtgactctc cataattgtt tttgttggtt
     6901 aattaccact aattcgcctt gttctgaaag gtcaaattgg cttactttgc caatttgggg
     6961 aagtgagagt ggagaaagct gaacatcagc aaacaaagaa gcggagaaca agcttaagat
     7021 taacagaata gattttttca ttagcgttac ctaaaaagaa gatttaaatg ataaagggag
     7081 atgttatctc cctttacgct ttagccttta taaccattcg ggttattttt ttgccaattc
     7141 caagtgtctt tcatcatttg ttctagccca cgctcggttt tccaacccag ttgctctaac
     7201 gctttttgtg gagcggagta gcaaacggca atatcgcccg ggcggcgatc taccactttg
     7261 tatggaatag taatgccatt tgcggcttca aaggctttta ccatatctag caccgaataa
     7321 cctgttcctg tgcctaaatt gtaaatgtgg aaaccggcat cattttggtg cttgtctaag
     7381 gcttttaagt gaccaagtgc taaatctacc acgtggatat aatcacgcac acctgtgcca
     7441 tcgtgagtat tataatcgcc accaaacacc gataattgag gtaatttgcc cacagccact
     7501 tggctgataa acggcattaa gttatttggg ataccgtttg gatcttcacc gattaaaccg
     7561 ctttcgtgag cccctaccgg gttgaagtaa cgcaatacta ccgcacttaa ttgtgggaag
     7621 gctttaacgg tatcttcaag aatgcgttca accatatatt tggacgtacc gtaagggttg
     7681 gttgtgccac cgacagggca agattccaca atcgggataa tctgcggatc accataaacg
     7741 gtcgccgatg aactaaacac aatggtattc acattggctt ttagcatctc ttctaccaat
     7801 acaatcgagc cggttacatt gttttgatag taacgtagcg gttctctgac gctttcgcct
     7861 acagctttta aaccggcaaa gtgaattacc gattcaatct gattttccgc aaaaattttg
     7921 cgtaaaatat cacgatctaa aatatcgcct tgatagaatt ttacgctctt gccggtgatc
     7981 tgcttcacac gctcaagtga tacttcagag gaattagaaa gattatctaa caccacgatt
     8041 tcacgatttt cgtttaataa ttcaactaat gtatgtgaac cgatgtagcc tgcaccacct
     8101 gtaactaaaa ttgccatttt atgttcctct ataaaattaa tacgaaccaa ggttattgtt
     8161 gctattttac ccgatttaat caggcttgct aatatttatt cagtttataa tgccactccg
     8221 gcttccggca gtaattccgg aatgccgttt ttaatcgggt aagcaatatt gagcttaggg
     8281 ttaattaatc ggttgttctc tttgtcccat tctaattttt cattagagac agggcagacg
     8341 aggttattga gtagtgtttc gttcatcttc ttttcctagt ttttgtagaa tcggggctaa
     8401 caaacaagcg gtcgattttt ctgaaaatgt tgcagaaacc ggtacatacc accaatttgg
     8461 ctgtgcaaaa tcgtggcatt ttaccgcatc tttctcggtc attaataacg gcgtttggct
     8521 atcagcaaat tgagccagct gagccttatc aaaggcttga tgatcggcaa agccttgagt
     8581 tttggcaagc ggaatgccta atttttctaa catcgtaaaa aagcgtggtg ggtgaccgat
     8641 accggcaatc gccacacagg gttgggtaaa ttcgcttaat ggcttgcgtt gattggtgac
     8701 taaattaatt gcatcagacg gttcaagcgt cattaaatgc tcgttagctt gcggtgtgcc
     8761 gccgttgcaa ataaccgctt gcacggagtt taaacggctc ggtaattcac gcaatccgcc
     8821 cgccggcagc acaaaaccgt taccgaaacg ccttacgcca tcaaccacca cccattccat
     8881 atctcgctgt agggcatagt gttgcaagcc atcatcggtg atgatgatgt ccggctcaaa
     8941 ctgacttaat agtaattcaa tgctttgttg gcggtttgga gaaatagcca aaggcacatt
     9001 ggttcgctga acaatcagaa ccggttcatc acccaccatt tcagcagaac tttctcgggt
     9061 aactaattgc ggaaacgttt tcgctttacc gccatagcct cgggaaatca cacctacttt
     9121 cacgccacgc tgttgcaatt gctctaccag ccaaaccacc actggcgttt tgccgttgcc
     9181 tccaaccgag atattaccga ctaccagcac aggcaaaggc gaacggtacg attgcaaaat
     9241 attcagagaa tataaccgct tgcgagcttg actaatcagc caaaacagca acgaaagcgg
     9301 cgaaagcagc caagtgataa gggattttgt ttgccagatt ttcatattat ttatttttaa
     9361 gtgtttcaac taaatctcgt aataaggcta attcacgttt ttggttttcg ataatttctt
     9421 ctttatgggc taataattca tctttgtggg agataataag ttgta
//
LOCUS       DANLUT010000097         9416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLUT010000097 DANLUT010000000
VERSION     DANLUT010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            91..1470
                     /gene="cysS"
                     /locus_tag="PXB38_001705"
     CDS             91..1470
                     /gene="cysS"
                     /locus_tag="PXB38_001705"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL5354005.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     GEHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLG
                     LLEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDT
                     PNGTIWRKA"
     gene            complement(1585..2532)
                     /gene="thrB"
                     /locus_tag="PXB38_001706"
     CDS             complement(1585..2532)
                     /gene="thrB"
                     /locus_tag="PXB38_001706"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL5354006.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRGGNVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEQFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(2532..4988)
                     /gene="thrA"
                     /locus_tag="PXB38_001707"
     CDS             complement(2532..4988)
                     /gene="thrA"
                     /locus_tag="PXB38_001707"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL5354007.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
     gene            5432..6073
                     /gene="sodA"
                     /locus_tag="PXB38_001708"
     CDS             5432..6073
                     /gene="sodA"
                     /locus_tag="PXB38_001708"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL5354008.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(6136..7260)
                     /gene="alr"
                     /locus_tag="PXB38_001709"
     CDS             complement(6136..7260)
                     /gene="alr"
                     /locus_tag="PXB38_001709"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL5354009.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVIAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            7390..9351
                     /gene="recD"
                     /locus_tag="PXB38_001710"
     CDS             7390..9351
                     /gene="recD"
                     /locus_tag="PXB38_001710"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL5354010.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGRFS"
BASE COUNT         2783 a         1940 c         2017 g         2676 t
ORIGIN      
        1 tacgccaaat tgcaaaaaaa tctcaaaatc agaccgctta ttcgctatac ttagccccat
       61 ttgttactga atgttacaca agaggacttt atgctcaaaa tttataacac cttaaaacgt
      121 gaaaaagaag aatttaaacc gattaaccca aatcaggtgg gaatgtacgt ctgtggcgtc
      181 acggtttacg atctttgtca ttttgggcac ggtcgcactt ttgtctcttt cgatgtgatt
      241 gcccgttatt tacgttattc aggctacaat ttacgctatg tgcgtaacat taccgatgtg
      301 gacgacaaaa tcatcaaacg tgcgttagaa aataacgaaa cttgcgatga attagtggat
      361 agaatgattg ctgaaatgca caaagatttt gatgcgttaa acattcttcg cccggacgtt
      421 gagccacgag ccaccaagca tattcctgaa attattgcga tggtagaaaa actgattcac
      481 aacggacacg cttatgtcgc agccgatggc gatgtgatgt ttgatgtgga atcgttccag
      541 aaatatggtg cattatcccg ccaaaattta gagcaactac aagccggtgc aagggttgaa
      601 attaaatcca tcaagaaaaa cccgatggat tttgtcttgt ggaaaatgtc gaaagccggt
      661 gagccaagct gggaaagccc gtggggcaat ggcagaccgg gctggcatat tgaatgttcg
      721 gcaatgaata gcaaagagtt gggcgaacat tttgatattc acggcggtgg ctcggattta
      781 atgttcccgc atcacgaaaa cgaaattgca caatcttgct gtgctcacgg tggcgattat
      841 gtcaattatt ggttacacac tggaatgctc accattgata aagaaaaaat gtcgaaatct
      901 ttgggcaatt tcttcagcat tcgccatatg ttaggcttat acgatgccga atcgttacgt
      961 tatttcttct taaccgctca ttaccgttcg ttattagatt acagcattga caaccttgat
     1021 ttagcccgtt cggctcttga gcgtttatat accgctctgc gtggttgtga tgtgtcgggc
     1081 gaagccattg gcggagaaca ctatgtagaa gcctttaaaa ccgcaatgga cgatgatttc
     1141 aacaccccgg gggcattagc ggtgttattt gaaattgccc gtgagttgaa caaactcaaa
     1201 accgaagata tggcaaaagc caacggttta gccgttcgtt taaaagagtt agccggcgtg
     1261 ctaggcttac tggaacaaga ccccgatgcg tttttaaaag gtgatgcgaa tgacgatgaa
     1321 acggcagaaa tcgaagcctt aatcaaacaa cgcaacgaag ccaaagcggc taaaaactgg
     1381 gcggttgccg atgaagtgcg agataagctc aaagcgataa atattgtcct cgaagacacc
     1441 ccaaacggca caatttggcg taaggcatag ccttcgattg tttataagtg atagactttt
     1501 caaaaaatta attaaaaagg gctgctccaa gtggtattgg agtcagtcct ttaagttatt
     1561 tagtgatatg gttgttcgag agggctattt cagctctctt gctccttgat tatcgacttt
     1621 acagatatga ataaagcctt cgttgttttg cagatattct ttctctaaat agctcactaa
     1681 acgttgagcg tgttcgagat caggggctat cgcaaacatt gtcggaccgg aacctgaaat
     1741 accaaccgct aacgcaccta agtctttaca gccttgacga acagccggaa agttcggcag
     1801 taaatcttca cggtaaggct cagcaattag gtctttcatc attgtagcag ccaagatatc
     1861 ttgatgtgta tggcaagcat ggacgaaaga tcctaagtag cgggcttgct gaatcatatc
     1921 ttgacgagta tagcttttcg gcaaaatagc acgggcttcg gcggttgata cttccacgcc
     1981 cgggtaggca agcacccaat accattcatc aaagaatggc agaggttggc aaatattgcc
     2041 gagcgattgt gtcattaatt gcaggccacc taaatagcaa ggggcaacgt tgtcgtagtg
     2101 gattgagcct gaaattctgc cttccaattc gcccatcatt tccagtaatt ccattttgga
     2161 gaactgttca tcgtggaatt tattgagtgc cactaatgct gcaacaatcg agcaggcact
     2221 tgagccaagc cctgaaccaa tcggcatatt tttttcgagg gttaaacgca aattttttac
     2281 gttgccacca cgcagtttta agcgttcact gaacagcaca taggcttggt aaacaatgtt
     2341 cttttgtggt tcttttggca atttacgcac aaaataacct gcactttcta gctcaaattg
     2401 ttgttcactc tcttcaattt gaactacatc gccgagcaaa gagccgtcaa tcggggagat
     2461 tgcagcgcct aatgagtcaa aacccacact aatatttgca cttgaagctg gggcataaat
     2521 tcgtaacgcc attagttcac tcctccttgt aaagtacgca gaatatctgc aaagataccg
     2581 gcagcggtta cgctattgcc cgcaccatac ccacgcaata ataatggaat agggttgtag
     2641 taacgtgtga gaaaagcaag ggcattttcg ccgtctttaa ctttgtaaag tgggtggttt
     2701 tcgtccacgg cttcaatggc aactcggcat ttatcacctg tgatcgagcc cacataacgc
     2761 aacactttgc cttcagcctt ggcagcttct acacgcttgc tgaattcttc gtctaaagac
     2821 ggtagagctt gtaaaaactc atcacgactc attccttccg agaagccttt tggcaatacg
     2881 ccttcaattt caatatcttc aaattcaagc ggtaagccgg tttcacgaac aagaattaag
     2941 agtttacgag caacatctgc accggataaa tcatctcgtg gatctggctc ggtaaagcct
     3001 ttttctttgg cgattaaagt tgcttgcgaa agggttaaac cttcttctaa tttgccgaaa
     3061 atgaaagaga gcgaaccgga taaaatccct tcaaatttct ctacttcgtc accggcagct
     3121 aataggtttt gtaagttttc aattaccggt aaacctgccc ctacattagt ttcgtagagg
     3181 aatttgtgct ggctttggcg ggcgttttca cgcatttcta agtagtaatc gtaacctgat
     3241 gtattggctt ttttgtttgg tgttaccacg tggaagccct cttttaaggc tcgtgcgtac
     3301 aggttcgcca ccgattgtgc cgaagtgcaa tctacaaata ctgggtttac cacgtggtgg
     3361 aatttgatga aagaaagcaa tacatcaaag tctgacggct gaattgcttt ttctaaatct
     3421 tctttccagt tgtctaaatt taagccgttt tcgttgagta acattttatc agaattagct
     3481 aaagcacaca cacggatctc aatatccttc tttgccaaaa actccttttg ttgtttgact
     3541 tgctcgatga gttcgctacc cacaccgcct acacccacta aaaacatatc caccacacgt
     3601 ttactgttaa atagcgattt gtgagttgct tttactgctt caatcgcttt gtttaacggc
     3661 acgacagcag aaatggaacg ctcagatgaa ccctgtgcaa ttgccacaat actgatgttg
     3721 gcttgggcta gggcagagaa gaagcgagcc gcaattcctt tggcggtacg cataccatca
     3781 cccaccaccg aaacaatgga taaatcttta ataatatcaa tcgggtcaag taagttttca
     3841 gataactctt gtgcaaattc agtatttaga gccgctaacg ctttttctgc cgattttgcc
     3901 ggcacgcaga agctgatgct atattctgat gatgattggg taattaaaat caccgaaata
     3961 ccggcttttg acatcgtcga gaacacacgg gcagccatgc ccaccattcc ctgcattcct
     4021 gaacctgaaa cgttgaacat cgccacgtta tcaaggttgg taatcccttt tactttgaga
     4081 ttatcgttcg ccacattgcc atcaattaat gtgccttttc cgtccggatt gccggtattt
     4141 ttgattaaac aaggaatatt gagcggcact aatggcccga tggtgcgagg gtggatcact
     4201 ttcgccccaa agtaggaaag ctccattgcc tcttgatagc tcattgtttc taagcatact
     4261 gcatcaggca ccaaacgagg gtcgcaggtg taaacgccat ctacgtccgt ccagatttca
     4321 caaacatcgg cttttaaaca cgctgccaaa caagcggcag aataatctga accgttacgc
     4381 cctaataaca ccagttcgcc ttgctcatta cctgcggtaa aaccagccat tagcacgata
     4441 tttttctttg gaattgaacc tgcatcaact cgcttggtgg attcggcaat atcgaccgaa
     4501 gattccaaat agctgccgtg agccaataat ttttcaacag ggtcgatacg agtgacttca
     4561 tagccttttg cctcgaacca cgcttgcatc atcgcaatag agagtttttc accacggcag
     4621 tgaatagtgg cagcaatttt atctgacaac gatttagttt gagctgcttc tgctgccact
     4681 tgctgaattt ggtttaattc cgcttccact aaggctaaca gtgcttcttt agcaaagtga
     4741 ttatttgtag catataagcc gttaatgatg ttgtggaaaa tctcggtagc ttcggaaagg
     4801 ttagattgaa atgattcacc ggcaatcgct ttatctacaa tagcgacaag atgattggta
     4861 attttggctg gggcggataa tacgccggca gcttgatctg ccaaatgagc tttctcgata
     4921 atctctgccg cttgcataaa gcgttcaggg ttggcaagag aagtgcctcc aaatttaaga
     4981 actcgcatag ttactcctga taaattattt gtaaattttt atacaaaaaa acccgcttgt
     5041 agcgggtttt cggtttattc tttcattatt tcagccaatt aaaacccgca ctatgttggt
     5101 gacataatgg tggtaataat cgttgtcatc atattaaaac aattcattgg cggaatctcg
     5161 gtcaagagag tgaataatgg ttcaagaatg cgtgaaaata atgcctttgt caatgggctt
     5221 aacgctgttt ttcaccacat ttttttaaat ttctttgtct ttctatataa aacaattaaa
     5281 agcaagaatt tgattaggaa cctttctaaa ttagatagtg aaataatttt gttctagatc
     5341 aaaaaaatgt gcattttttg tgtgtttctt gataaaatgt actcggagtt taactctgat
     5401 taacctattt actatttgag aggaattaac tatggcatat acattaccag aattaggcta
     5461 cgcttatgat gcgttagagc cacatttcga tgctaaaaca atggaaatcc accattctaa
     5521 acatcaccaa gcttacatca acaatgcaaa tgcagcatta gaagctcacc ctgaattatt
     5581 agaaaaatgt ccgggtgcat taatcaaaga tttgagccaa gtgcctgcag aaaaacgtat
     5641 cgcagtgcgt aacaacgtag gtggtcatgt aaaccacact ttattctgga aaggtttaaa
     5701 aacaggcact accttacaag gtgcattaaa agaagcgatt gagcgtgatt tcggttcagt
     5761 tgaagctttc caatcagaat ttgaaaaagc agcgactact cgtgttggtt caggctgggc
     5821 gtggttagta ttagaagagg gtaaattagc cgttgtttca accgctaacc aggacaaccc
     5881 actaatgggt aaagaagtgg caggcgtttc aggctatccg attttagtct tagacgtttg
     5941 ggaacacgct tactacttaa actaccaaaa ccgccgtccg gatttcatta aagcattctg
     6001 gaacgttgta aactgggacg aagccgctcg ccgttttgaa gaaaaagtag caacctgcgg
     6061 ttgtgcgaaa taatattttc gatcttgaat aagatacaag cggtaaaatt tgttgaaaat
     6121 tttaccgctt gttgtctatt tatattcaaa aatcacacga ggagtgagtt tagtaatcag
     6181 ctcatagcta atcacgccaa tgtgtttcgc cacatcttca attaatagtt gctctcccca
     6241 aaaaatggct ttatcgccca ctttatcttg gctctctgca cctaaatcga ccgtcagcat
     6301 atccatcgaa actcgaccga caatcggcac tattctaccg ttaatcaaca caggggtacc
     6361 ttcaggagca ttgcgagggt agccatcgcc gtagcccatt gcaatcacgc cgagtttggt
     6421 atctttaggg cttacccaag caccaccata gcctacaggc tcgccggctt tatgggtacg
     6481 cacagcgatc agggaagagg agagcgtcat taccggctta aaacctaaat cggtaatcgg
     6541 cgtatagtgg ggagaaatgc cgtgcataat aatacccggg cgaacccaat cataatgagc
     6601 ctgtttccaa taaagaatac cgcttgaggc ggaaatactg cggtcgtgat cctgatattt
     6661 ttgcgtagct tgctcaaaca ccgcaatttg tttttcggta tagccacaat cgagttcatc
     6721 ggcacggcta aaatgactca caaagctgat tgaattgacc aaggcacaat ttttcaaacg
     6781 ttcaacaaag tgatcgactt gctccgggtg aatgcctaag cggtgcattc cggtgtcgat
     6841 ttttagccaa atgttaatcg ggaagtagat tttcgcttta cgagtccaaa agcctttttg
     6901 ttgctctgcc tgccattctt ttgctacttg ctcgagtaat tccagttgtt cgaggttatg
     6961 aatgacggta tcaaacttgc gggaaagggt tttgagtagc tcttctcggt caaaaaaacc
     7021 ttcaactaac acaattttgc ctgtgtatcc ggtttcttga atttctaagg cttcacgcaa
     7081 acgggcaact ccaaagccat caaccatatc tgctaatgtg ccggcagccg gcaataagcc
     7141 ttgcccgtaa gcattggctt tgatcatcgc caataatttt tgctgtggag cgaaagattt
     7201 gatcaagcga atattatggc ggagggcttg actatcaatg gttgctgttg ctggtttcat
     7261 acttatctac atagttaaaa tcacaagaaa ggctaaatta tacgcctaaa ataaaaaatc
     7321 ccttagaaaa taatgcaaaa aagattagta ttatcactta atgttaggtg gtcgatttaa
     7381 ggtttgatta tgctgaattt attattggaa cttaaacaag aaaaggcgat ttctgactta
     7441 aattatcaat ttgcccgttt tattgataat aagcagaaac cctatgggta ttcgcctttg
     7501 gagcaagatt tagctgtgtt agccgctgcg ttggtttctt accaagtggg acttgggcat
     7561 acggcattac gtttggaaaa tctcagtctt tcttctcttt ttgaattaaa tagcaagcca
     7621 caaacttatc atttgctcga acaaattttg caaaaaattg agcaaattcc accgcttgaa
     7681 tggcagagtg tgctgaaaaa tcatatcgct tttagctatt ctcccgaaac aattaaaccg
     7741 atgttattcc aaaacagctt gctctatttt tatcgctact ggcaagcgga gcatcgcatt
     7801 gccggttatt tacaacaagc ggttgatttt tcggaaaaat ttgcaaatac cgaattaaac
     7861 caaagcattc tcaaccaact attcactggg aaagctcaaa ctatcgactg gcaaaagatt
     7921 gccgttgcaa cagcattaga aaagcagttt agcttaattt caggtgggcc gggaaccgga
     7981 aaaacaacta cggtagtaaa attattactc gggctgcaat taaaacagca agcactacag
     8041 aaaccatatt tgcaaatcgc tctggctgca ccaaccggaa aagcagcagc aagaatgaaa
     8101 gagtcgctgg aaagcaagtt ggcggaagaa aaggggttat ctgaggagtt aaaacgctct
     8161 attccaactg aagcagtgac tattcatcgc ttgcttggtg cgagaccatt aactgagaaa
     8221 accaaatatc ataccaaaaa tccgtggcac tatgatttgg tcgtattaga tgaggcttca
     8281 atgattgatt tatcaatgat ggagaaagtt gttcaagcgc tcaaaccaaa ctctcgcttg
     8341 ataatgctgg gagataaaga tcagcttgct tctgtggaag ctggttcaat tatgggggaa
     8401 cttggctctt ttattgataa tggttatagc caatcccatt gcgattactt aaaagccgtt
     8461 accgactacc aaattgaagc cggtaatgcg ttgccgattg gtgattgttt atctcactta
     8521 aaacatagct atcgatttgg cgaaaaagcc tggattggag agcttgcaaa tgcagtaaat
     8581 gatcaaaaaa ttaacctttc gtgggagatt ttcgacaaat ataaaaacag tgataagtta
     8641 gaaaatttct gttatccgga aacgaaagag acaacggata aatcaagctg gattgaaaaa
     8701 agtgtgcaaa tggtggtgga taaagcggtt gaactttatc gtgattattt acaagcggtt
     8761 caaaaacggg agaaaaatcc agattcagtg agtgtgaaag cgatttttga gaaatttcaa
     8821 aaagtccgaa ttttatcagc cttaagggta agtgaactgg gggttgaacg tcttaatatg
     8881 gcgattgcgg aaggcttgcg gaaagctagc ttagtgaaat ttaatcatag ccgagaccgc
     8941 tatatcggaa aaccgatttt aatgacagaa aatatgccga taaatagcat agccagcggt
     9001 gatgtcggca tcattttgcc ggacgaaaat ggagaaagcc gagtttattt tgattcctta
     9061 caggaaaata gagaacacca tagtttgcct ctaggtaggg tttcaaatta tgaagcagct
     9121 tatattatga ctgtgcataa atcgcaaggt tctgaatttg aacatacggt attggtgttg
     9181 ccccattcga tttccccggt gctgacgaaa gagttgattt acaccgcaat cacaagggca
     9241 aaagataaat ttaccttatt tggtagcgaa aaagtttgga aatacagtgt tggtgccaaa
     9301 accgaaagac aaagtgggct aaaagaacaa ataagaggca ggtttagcta aattaatact
     9361 cgttttgccg taaaaatacg caagcggtca tttttttcaa atttttttac aaaaac
//
LOCUS       DANLUT010000098         9268 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLUT010000098 DANLUT010000000
VERSION     DANLUT010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9268
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..387)
                     /locus_tag="PXB38_001711"
     CDS             complement(<1..387)
                     /locus_tag="PXB38_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354011.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIY"
     gene            complement(419..940)
                     /locus_tag="PXB38_001712"
     CDS             complement(419..940)
                     /locus_tag="PXB38_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL5354012.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            complement(1041..1490)
                     /locus_tag="PXB38_001713"
     CDS             complement(1041..1490)
                     /locus_tag="PXB38_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL5354013.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            complement(1550..2221)
                     /locus_tag="PXB38_001714"
     CDS             complement(1550..2221)
                     /locus_tag="PXB38_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5354014.1"
                     /translation="MNYAVNKTEILTSVYQGSATPAKNPMPSTIWGYNNEVAGYEFNP
                     EKAKSLLKEAGLENGFETEIWAMPVSRPYNPNARRMAEMIQEDWKAIGVEAKIVSYEW
                     GEYLKRMGNGEHATGMIGWTGDNGDPDNFLNALLSCNAVEQGSNYAGFCNPEFDRLIN
                     EAATISDQNKRSDLYKKAKFIFNEQAPWLPIAHSTVYFPVRKEVKGYVVSPFIAHNFY
                     GVELE"
     gene            complement(2218..2565)
                     /locus_tag="PXB38_001715"
     CDS             complement(2218..2565)
                     /locus_tag="PXB38_001715"
                     /inference="COORDINATES: protein motif:HMM:NF012706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354015.1"
                     /translation="MQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVRFTAFEHYWEGKA
                     KIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLPALKANKDIQLFEKSGLNIGIL
                     VSPLLITLKFVKH"
     gene            complement(2456..3119)
                     /locus_tag="PXB38_001716"
                     /pseudo
     CDS             complement(2456..3119)
                     /locus_tag="PXB38_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251461.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
     misc_feature    complement(3139..3284)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(3461..4471)
                     /gene="mglC"
                     /locus_tag="PXB38_001717"
     CDS             complement(3461..4471)
                     /gene="mglC"
                     /locus_tag="PXB38_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL5354016.1"
                     /translation="MSALQQNKTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(4485..5984)
                     /gene="mglA"
                     /locus_tag="PXB38_001718"
     CDS             complement(4485..5984)
                     /gene="mglA"
                     /locus_tag="PXB38_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL5354017.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVEIIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDAMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(6056..7045)
                     /gene="mglB"
                     /locus_tag="PXB38_001719"
     CDS             complement(6056..7045)
                     /gene="mglB"
                     /locus_tag="PXB38_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5354018.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEGVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLAGGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
     gene            complement(7320..8312)
                     /gene="mglB"
                     /locus_tag="PXB38_001720"
     CDS             complement(7320..8312)
                     /gene="mglB"
                     /locus_tag="PXB38_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5354019.1"
                     /translation="MKRSLLNAFVYTLMLGANASYAQSEPRIGVTIYKYDDNFMMLMR
                     KEMNKEMANFSHLKWFMNDAQNSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEK
                     AKLSNVPVVFFNRSSDNQALESYDKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
     gene            complement(8417..8802)
                     /locus_tag="PXB38_001721"
                     /pseudo
     CDS             complement(8417..8802)
                     /locus_tag="PXB38_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612952.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
     gene            8940..9227
                     /locus_tag="PXB38_001722"
     CDS             8940..9227
                     /locus_tag="PXB38_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5354020.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVANITRTYETEAEAQAAL
                     EIFTQKARDVESEPCEIESEIRPVDGGVKLNANFKFSCQAEVVIFQLGTRN"
BASE COUNT         2742 a         1979 c         1608 g         2939 t
ORIGIN      
        1 ataaatttca ttattttcta ctttaaagcc aacaatttct tttaacacct ctctggtatt
       61 attcactgtt cctaacttac aagcggccgt ttttgtctta cgttttccca aacagccgtc
      121 ttggtttaaa tcgtaaaatc caataatgca atttttatgc acaatattca ggcttttccc
      181 tgcttgctga aataaatcaa aattactgtc tgttctgtga gagccttgat agccaatgtg
      241 ttgaaaatgc tgttggaagt agtttagtaa ctggtgagct tctgcttgca agtagagctg
      301 ttctttttgt ttggtttgtg tgtaatagaa atcggcataa cttgaagcaa caagcaataa
      361 taaaaacgcc cctaatgcac tagccattaa tacttcaatt aggctaaaag cagataaact
      421 aatctttgca ggtgctacgt ttattttttg ctgccacata aacccgtcct aattgttcaa
      481 attgcaaaat ttcattttct ttatttaaac tgagcttaat acattttgat tctaattgac
      541 cacttacccc atcaacatta ataaaggatt tcggatataa acttttattt tttaatacaa
      601 tctgctgatg agtcggcgta taaagatgat attcttttcc taaatcacaa aaatgtttat
      661 tcaaacaatc acaaataatt tgtttgctag tattgattgg cttaattacc gcaatcatac
      721 accactgatt attccgctga gaaagggtta aggtataatt acgtttggta taacgtgctt
      781 tagtttggat ttgctgaata aaagattgga tattttcaat ttcactatga agtgcaattc
      841 gatcttgcag tgtaaaaata accggcgaga taaaataaac agcgatcacc ataatagtga
      901 tagtggttag tatttcaatt aatgtgatgg ctttatacat aaaaataccc tcattgatag
      961 agggtatctt agaatttaag catcatttgt aaactattaa atattgattt ttcgatgcag
     1021 atcgcaaaat taaatcactt ctacttaact tgctctaaat attcaaataa acgtccttta
     1081 ttttctttcg tgcgtttttc aattttttcc acttcttttt gtgtggcttc aagattgaga
     1141 gcttgtccta cttggataat tccggccata ttcatggttc ggtgtggcgg acaatagtaa
     1201 acataaacac cttcgtgagt aagggtaata gtaaattcct catcttcttt agataagaac
     1261 ttctccgcac cttccggaat cgagcggctt tcaacccaat gccctttatg agacggaata
     1321 aatgttaccg tatcgcccac ctctgctttt acataaccgg gctcaaatac cattgatcct
     1381 tccgcattgt tatctaacat tttgatttcg tgatgggctg aaaatactga ggctgaacaa
     1441 aatgccaatg ttacacaagc taattgattc cacttaagtt tcgctaacat atatttattg
     1501 ctcctaaatt tatgaggcac aaaatgagtt caattcatta taccttaggt tattccagct
     1561 caacaccata aaaattatga gcaataaacg ggctgacaac atagcctttt acctctttcc
     1621 ttaccggaaa atacaccgtt gaatgtgcaa tcggtaacca aggtgcttgc tcattaaaga
     1681 tgaatttcgc ttttttatat aaatctgacc gcttgttttg atcactgata gtcgcagcct
     1741 cattaattaa acggtcaaac tctggattac aaaaccctgc atagtttgag ccttgttcta
     1801 ccgcattaca actgagtagg gcattgagga aattatctgg atcgccgtta tctccggtcc
     1861 aaccaatcat tccggtagcg tgctcgccgt ttcccattcg tttaagatat tctccccatt
     1921 catagctcac tatctttgcc tctaccccta ttgctttcca atcctcttga atcatttcag
     1981 ccattctacg ggcatttgga ttgtaagggc gagaaacagg cattgcccaa atttctgttt
     2041 caaagccatt ttctaatccg gcctctttaa gcaagctctt cgccttttcc ggattaaatt
     2101 cataaccggc tacttcgttg ttatatcccc aaatcgtaga aggcattggg tttttagctg
     2161 gcgttgcaga gccttggtaa acggaagtta aaatttcagt tttattcacc gcataattca
     2221 atgcttgacg aactttaggg ttatcaaaag ggggcttacg agtattccga tatttaggcc
     2281 tgacttttca aataattgaa tatctttatt cgcttttaaa gcaggcaaat ctgacgggtt
     2341 cggataaggc atcgcttggc attcgttctt ctccaattta gctaaacgta ctgaggcatc
     2401 gggcgtaata ctaaatacaa ggcgatctat cttcgctttt ccttcccaat agtgttcaaa
     2461 tgctgtaaat cttaccgcag cgtccttttg gtaaccatag aactggaatg cacctgtgcc
     2521 tataggttct aaatctaatt tttccggcgt acccgctatt tgcatattcc gcagaaaaga
     2581 tcgccataaa atccatagct aaattagcaa gaaagggggc atttggttca gataattcga
     2641 tttttaccgt gtaatcatct acttttgtta catttttgat gatgttttgc atattcattc
     2701 cgtagaaaaa ctcatagtta ccgccgggca atttgtgata tggcttcgtc ttatcaaact
     2761 gacggttaat cgaaaaaata acatcatcag cattaaaata acgactaggg gtaaaacttt
     2821 tattactctg gaactgcaca ttctgacaca agaaaaaagt ataaattttt ccgtcttcac
     2881 tgatttccca ttcgctctgc cagagaagga gtgaggttag ttgtaccttt ttcaaaatca
     2941 atcaggcgat tatagattgc ttgcccgaca tcaagagtag ctccatctgt tgcaatctga
     3001 ggattcaatg ctgccggaga tgattccaaa cagtaagtaa aagatttagg tgctgcgaaa
     3061 gcagaacctg taaatgctaa agaaataagt gcaagttgtg tcagcttgtt cattgtcata
     3121 tccttaaatg ttaagcaata aaaaaccctt tcaaaagttg ccttccgaaa gggttagaat
     3181 tgggtttgcg attttggatt gcgtttgcca tttcaggttt tcggaagata tcttccgaac
     3241 acgccaaatg cccgaaagat taatcggtca aatggtagtg atgatgttta acgcaatagc
     3301 tcataatatt ctccaaaatt gaatgtttag gaatttacgc tttttaaaaa tcaattgcaa
     3361 acgttttctt taaaattttg taaaaaattc aacattttta accgcttgta tcgtacctag
     3421 gagcaaatgg cgatttgctc ctaggtttcc aagcaatagg ctattttttc ttcgcatatt
     3481 taagtgagtc aatcgctacc gccaagataa tgatgccacc tttaataata tattgccagt
     3541 aagggtttac tccaatatag gttaagccgt agttgataac ggtgaagatt aacacccctg
     3601 ttactacacc gatgatagta cccacaccac cggcaaagga taccccacct accacacaag
     3661 cagcgattgc gtccatttca tacataaagc ccaagttgtt agtcgcactt ccgatacgtc
     3721 ctgcttctaa cataccgccg aaggcataga agatgcctga aagcatataa atacccatca
     3781 ggttaagcgg tacgtttaca ccggaaactc gtgctgcttc agggttgccg ccaatagcaa
     3841 atacgttttt accgaagcgg gttttattcc ataacgtcca cataataatg gtagcaatca
     3901 cggcataaat agtgatgtag gatagcctaa agtcgccaaa gcggaagaag ccttgtgcaa
     3961 aggttgagaa atcatcgcta aagcctgcaa ttggcgatga gcctactgca tcgtagtaaa
     4021 gcgagttgat accatacaca ataatcattg ttcccatcgt ggcaataaac ggtgttacgt
     4081 tgaggtaagc caccacaaag ccgttaaata aaccaatgac agcaccgatg gcacacacgg
     4141 ttaatacaac cacaggaatc gggatttccg agaggtttgg gaataccttg ttcatatttt
     4201 ccattgattg caacaaggtt gccgagatta ccgcagcaag ccctacctga cgaccggcag
     4261 ataagtcggt tccttgtgtg acaatcaagc ctgcaacccc taatgcaata atcagacgca
     4321 cagaagattg cgataaaata ttactgaagt tacgcaagct caagaaactt ggatcttgca
     4381 caataatcac aattaataag attaaaagta caaagtaaat cgcattttgt ttaaaaaaat
     4441 cgagcgtttt attttgttgt aaggcagaca taattcactc cttgttataa gtattttgct
     4501 gcgagttgca agatttcttc ttgcgaggtg tgagcggttt cgacaatacc tgcaactttc
     4561 ccgttactca tcactaaaat tcggtctgtg accccaagca attccggcat ttccgatgaa
     4621 atcataatga tgcctttatc tttattcgcc agctctaaaa tcaactggta aatttcaaat
     4681 tttgccccga tatcgatacc acgggtcggc tcgtcaagca tcaagatttc aggctgggtt
     4741 aacaaccaac gcccgataat cactttttgt tggttaccgc cggaaagtga gccgatatgg
     4801 gtttggtgtg atggcgtttt tacattcatc gcatcaatta cccattgggt atcgcttttc
     4861 atttttttat tgctcagtaa gccgaactta cctagataag acttcatatt tgaaatcaga
     4921 gagttaaact caatgcttaa gttggcataa atccctgttg aacggcgttc ttctgtaacc
     4981 aatgcaaagc cgttattaat cgcatcaaaa gcgttgcggt tattgatttc tttatcgttt
     5041 agtcggatag tgccgcctgc tttctcccgt acaccgaaaa tgatttcaac aatatcagtc
     5101 cgttttgctc caactaagcc ggcgatgcct aaaatttccc ctctgcgtaa gctaaagctg
     5161 acatcttgaa tagagggttg attttttgcc gttaaatgct caacttcaag aatcacttct
     5221 ttcggcagat tggttttttc agggaaacgc tgggtcagct cacgccctac catcattgaa
     5281 accacttgat ccattgaggt atctttaatt gcaacggtgt ttacccattt accgtcacgc
     5341 aaaatggtaa tttcatcaca aattttaaaa atttcgtcca ttttgtgtga aatatagata
     5401 atgccacagc ctctgtcttt cagtttttgg ataattttaa ataaatgctc gacttctttt
     5461 tctgaaagtg acgaagttgg ttcgtccata atcacaattt tggcattgta agagaaagct
     5521 tttgcaatct cgatcatctg catttgtgaa accgataatt tggctacttt atcacgtgga
     5581 tcaacatcaa tatctaattc atcaaaaatc gccttagtat cacgatacat tttatcgtga
     5641 tctacaaaag gcccttttag tgggtaacga cctagccata agttatccat taccgtcact
     5701 tgttttacta ggttcaactc ttggtgaacc attgagatcc cattttctaa cgcctctttt
     5761 gaggtcttaa aattcaccgg cttgccaaga aagagaatat ctccctcatc tttagcataa
     5821 atcccaaata agcatttcag taacgttgat ttacctgctc cattctctcc cattaaggcg
     5881 tgaacactat gggatttcac cgttaagtta gcattatcta aggcttttac cccgggaaat
     5941 gacttgctaa catttgtcat tgtgagtaaa acttcacctg tcatatctca cccctgatta
     6001 catcgaaaaa tcgaaaaaaa gcacgggtat ccatcacccg tgctaaaagc gtgaattatt
     6061 ttaaaaattc agataagttg tctttatcga caccaacgta aggaatacgc accacacggt
     6121 tttccaattt ccattgtgta ccagcaactg catctttacc gcctgctaag ttagcagaaa
     6181 gctgaacaac cgctttacct tggtttacac catcatttaa taccgtaccg gctaattcac
     6241 cttttttgat taattgaagt gcttctggca atgcatctac accgaagatt ggtaattttc
     6301 taccgtgagc tttggttgct tctaatgcac ctaacgccat accatcatta ttagaaataa
     6361 ttacttcgat gtctttcgct ttaccacttg ataaccaagc atccacttta tctttagctt
     6421 gggctgcatc ccataatgct gcgtccataa agatttgctc actgtcgata ccttgtgctt
     6481 ttaagctttc taccacatat ttagtacgtg cttccgcatc agggtgaccc ggctcacctt
     6541 ttaataaggc aaattggatt ttaccgtctt tattcaagtc taattcagga tgggctttcc
     6601 actgttttgc aattaactca ccttgaataa tgcctgactc tttcggctca gtacctacat
     6661 aataagcttt cggatagcta tcaatcgcag ctgcacccgg gtctttattg aagaacacca
     6721 caggcacacc ttcacttttt gctttttgaa taattgtttt ataagctgat ggatccacta
     6781 agttaattgc taatgcttta acccctttag aaagtaatac atcaacttgg tcgttttgaa
     6841 tagattgcgt attttgcgag tcattcatta ataactcgac tttttgtgtt ttaccctctt
     6901 tttcgatttc tttacgcatt aatgccataa agttatcgtc atatttataa attgttacac
     6961 caatacggtt ttcagcttga gctgtactga tcgttgcacc taatgcgact gccattgcca
     7021 ctgcacttaa tactgctttc ttcataggag atcacctctt ttatgtgttt atagggaaat
     7081 gaattgctta ccataagcaa cttggtgcaa agtataacta attttaaaaa aacaatccgt
     7141 gatcattctc acagaattaa gacaaagtgg agaaattttt aatttgaagt ataaaatttg
     7201 aatattcgct ctattcaaat ctgttggaag aaaagagaaa ggatttgcaa gattttactg
     7261 aaaaatgacc gattgttatc atcaataagg ggcgtattta taacgccccg ctcctccatt
     7321 taaggtaaaa attgccctaa attttcctta tcaataccaa tatgtggaag ataaatcgtt
     7381 ttagaggaat ggctctccca ctgcgtatct ttcagagcag gcttaccttg tgccaaatta
     7441 gataccaatt tcaccaccgc tttcgcttgt gcagagctat catttaatac cgtgccggct
     7501 atttcccctt ttttcattaa tgctaacgtc tcaggcaagg catcaatacc aaagatcggc
     7561 aatcttttct cgtgtgcatt taacgcatct aaagcaccaa ttgccatttc atcattgttt
     7621 gaaatcacaa cttcaatctc agctgcacgg ttttccacca gccactcatt cattttattg
     7681 cgagccaatg ttctacgcca tctcgccgtg tcactgtaaa tttcttctgc ctgaacacct
     7741 tgttgattaa gcgattcaac cacagcttga gaacgctcag cgctcacatc actcggctcg
     7801 cccttaagca atacaaattg caatttcccg tctttattta gatcgaaatc ggggtttgat
     7861 ttccacactt tcgcaattaa ttccccttgg attctaccgg cctcttttgg atcactactc
     7921 acaaaatagg ctttgtcata actctctaat gcttggttat cagacgagcg gttaaaaaac
     7981 accacaggca cattagacaa tttggctttc tctacaattg ttttcgattc attcgcgtga
     8041 acaatattga ctgccaatac attaacttga tgcttaagca acgtttcaat ctgctttaac
     8101 tgttttacct gcgaattttg agcatcgttc ataaaccatt tgaggtggct gaaattcgcc
     8161 atttccttgt tcatttcttt acgcatcaac atcataaagt tgtcatcata cttataaatc
     8221 gtaacgccaa ttctaggttc agattgagca tagctcgcat tcgccccaag cattagcgta
     8281 tagacaaaag catttaatag gctacgtttc atcgttttca tagaatgtcc ctcttcctat
     8341 gttgaaatac gttagcgaaa gcatagcgaa tttagcaaag cgaaaccgtg atcggcttca
     8401 cagattagaa agattttcat tggttcgatg taataaattt caggcgtaaa tggtcataaa
     8461 tccaattaaa aataatggaa taaaccagca caaataatgt cataccaata tccattacaa
     8521 aggcttctca ccagccaata ttaagcatat acattaccaa tggaatggta aaaaccaaca
     8581 gcccgccttc aaataagacc gaatgcccaa tcttcttgca attcgctcgc ccttgactac
     8641 tttatcaaac agccagttat agacaaaatt ccacaccctt gcgacaacag agatcataat
     8701 aatcacactc gctaacgagc ttgtgctatg ttccgtgagc agtgatgtta aaatcacggt
     8761 aaacacaatg gcaaaaaact caaataaaac tgcatgtagc acacgctccc aagcgtgtca
     8821 tttttcctcc aaaatttgca aaaggctatc taaatcaaat tatcgtgaaa tcacgattgc
     8881 acccacgctt atttagtttt aaagtagtga tattatttat caattatgag gattagccaa
     8941 tgaaaaacga taaacccatt gaatgcgaag gctgcaatac ctttgatgtc ggctcaattt
     9001 tagataatag tgaaactgtt gcaaacatta ctcgcactta cgaaaccgaa gccgaagctc
     9061 aagcagcatt agaaatattt actcaaaaag cacgtgatgt tgaatccgag ccgtgcgaaa
     9121 ttgagagcga aatccgccct gtggacggcg gcgttaaact caatgctaat tttaaattta
     9181 gctgccaagc tgaagtagtt atcttccaat taggtacaag aaattaatag aaaggctggt
     9241 ttaaccagcc tttcttctct ttaaaagc
//
LOCUS       DANLUT010000099         9173 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLUT010000099 DANLUT010000000
VERSION     DANLUT010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9173
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..268
                     /locus_tag="PXB38_001723"
     CDS             <1..268
                     /locus_tag="PXB38_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354021.1"
                     /translation="VRCRAFRYDEIIQTKFIEGFREGEIPADDYGFEDWNGSVLILNE
                     EGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEMKLGLLEAK"
     gene            268..720
                     /gene="ssb"
                     /locus_tag="PXB38_001724"
     CDS             268..720
                     /gene="ssb"
                     /locus_tag="PXB38_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5354022.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            731..1063
                     /locus_tag="PXB38_001725"
     CDS             731..1063
                     /locus_tag="PXB38_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354023.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            1053..1322
                     /locus_tag="PXB38_001726"
     CDS             1053..1322
                     /locus_tag="PXB38_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354024.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ"
     gene            1297..1587
                     /locus_tag="PXB38_001727"
     CDS             1297..1587
                     /locus_tag="PXB38_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354025.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(1857..2039)
                     /locus_tag="PXB38_001728"
     CDS             complement(1857..2039)
                     /locus_tag="PXB38_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL5354026.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(2317..3315)
                     /locus_tag="PXB38_001729"
     CDS             complement(2317..3315)
                     /locus_tag="PXB38_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5354027.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            complement(3543..3619)
                     /locus_tag="PXB38_001730"
     tRNA            complement(3543..3619)
                     /locus_tag="PXB38_001730"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3583..3585),aa:Val,seq:gac)
     gene            complement(3683..4495)
                     /gene="apaH"
                     /locus_tag="PXB38_001731"
     CDS             complement(3683..4495)
                     /gene="apaH"
                     /locus_tag="PXB38_001731"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL5354028.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLATMLGIKRVKPNDKIDAIFEAKDRLDLQNWL
                     RNQPLVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKP
                     ERWSEDLQSVERWRYIINVFARMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLF
                     TQKNIIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(4587..6563)
                     /locus_tag="PXB38_001732"
     CDS             complement(4587..6563)
                     /locus_tag="PXB38_001732"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL5354029.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKVTEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            6723..7001
                     /locus_tag="PXB38_001733"
     CDS             6723..7001
                     /locus_tag="PXB38_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5354030.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGFAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            7026..7322
                     /locus_tag="PXB38_001734"
     CDS             7026..7322
                     /locus_tag="PXB38_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5354031.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
     gene            complement(7375..8166)
                     /locus_tag="PXB38_001735"
     CDS             complement(7375..8166)
                     /locus_tag="PXB38_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5354032.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFIHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENATLLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
     gene            complement(8310..9083)
                     /locus_tag="PXB38_001736"
     CDS             complement(8310..9083)
                     /locus_tag="PXB38_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL5354033.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKSGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHESYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSVKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAKLAGAIKPQQNIIAQTTA"
BASE COUNT         2657 a         1641 c         2024 g         2851 t
ORIGIN      
        1 ggtgcgttgc agagcgtttc gttatgatga gattattcaa actaagttta ttgaaggatt
       61 tcgagaggga gagataccag ctgatgatta tggatttgaa gattggaatg gttcggttct
      121 gattttaaat gaagaaggac gtaaatattt tgagaactat ctttttgatg taaagaagaa
      181 ttattgtaga gcaagggata actatgtata tgtcttggaa actttagacg aaattgaaat
      241 gaagttagga ttattggagg cgaaataatg aacttagtca cattagtcgg acgtttgggg
      301 caagaccctg atattagaac aatgcaaaat ggtgagaaag ctgcggcttt atcggtagcg
      361 acctctgaaa agtggacaga taagcaaaca ggtgtgaaga aagaaagcac cgaatggcat
      421 agggtggtgc tttatcgccg attagctgaa atcgccgaat tgtatgtaaa aaaagggcat
      481 ttggtatcaa ttatcgggaa aattaaaacc cgaaaatgga cggatagcaa cggtgttgag
      541 cggagtatta cagagattat tgccgagcag atgcaaatgc tcagtagtgg tgagaaaaat
      601 acgccaaata cgccaaataa ggcagaaaat aaaccgcaac caaagcagaa aaatcaagac
      661 gtgatgactg cggacgagca gaaagatatt ccgcagtttg atgatgatat tccgttttag
      721 ggggtgaata atgagagaat gggaaaaaca aatgccattt agtgcaaatt tacatataag
      781 acctacagga aaatttgaag tgaaaaatgt aaacatagaa caaataatcg gagaacgtgg
      841 caaaaattac ggcaactttg atgatgttgc cacaatgagc cagcagttaa aagcagtgtt
      901 gctggatacc aatactcaac ttaaaccaca tcaaaaagag gcaggcgaga tgatctgctt
      961 gaaactggct cgcatttttg caggttgtaa tccggactat gaagataact ggcgagatat
     1021 tgcgggttat gcggtgctgg gagggaaatt aaatgaaaaa taaaatgggg agtaaattta
     1081 tacgagtcag agttgagcat ccacagcgga aaaaagaaga tattgagctt gtgcaggatg
     1141 tggttgctta tcatattttt aatcttttta aatttgagga aagtgggtta cgggggttta
     1201 gtcagtatga tttggaaatt gatgtgaaag ttaagccagt gttagaacaa aaagaaatgc
     1261 ctgtagatgt ttggattgat gatttaggtg gtaaaaatgg aacaattaca agcggtcagt
     1321 aatgagcaag tttttgcaaa actttgtgag gttgagcggt tattaaaaac caaaggggtg
     1381 aatgagcata gccgtgaatt gtgggatttg ggcgatgtag cagcatattt cggctacact
     1441 aaagaacaca ccagccgaag tgttgtatct agtccacatt ttccgaaacc gattgccctt
     1501 gacggcttac gaggcaaggg caggggggcg aagaagtggg tatccggtga agtggtgaaa
     1561 ttttgtttga tgtggaaggt gaagtgatga taaaaaagat aatcttagat gcttgttgcg
     1621 gtagccgaat gtttcacttt aataagcaca acccctcggt attgtttgct gacaatcggg
     1681 aatccctgta tcgaaaattt taaatgttat cgaataccaa cctatctatg ggcataaaag
     1741 cggtaaacat aacaaaacgc attggctggc atttgtaaag atggataata acgattattt
     1801 gtaaagtatt tcaaaataca aaagccgata aatttcatta tttatcggct tttgttttat
     1861 gggttgtttt gcttgaattg ttgaatagct tgaataatca gctggttttg tggaatgttg
     1921 agtttttggc taagtacttc gatttctgcg atcacctcaa gcggtagttt aaaggatttt
     1981 tgctttattc ctcgttttgc ctcgctttta gcttggattt catttcttga cattgccata
     2041 atttatccct attataaatt ttgttgaaga gctgggagct ttcaccccca gcgagttgct
     2101 tcagattagt aagctgggga gctaaggact aataagaaga caactaggat aatgtattta
     2161 aacattgtgc tatccttctt catttcgtaa ggtttaagcc ttacgctcac tttcaagctg
     2221 tctcttgaaa gtgaggttat tataatatag ggtatcctac attgcaagta ataaatacaa
     2281 aaaagccgat aaattttcgt ttatcggctt ttgtttttat tgcagtttgc tcacaagttc
     2341 tgaaatatca gggttatagt aggtattttg caaaatactt aaatctcgat gccccgatac
     2401 tttggcaagc tccattaccg tcagatattt agacaaacgt gtgagtgcct ctcgccgtgt
     2461 gtcgtgaaaa tgcagatcgg cattgtgtag attggctttt tgtttcagct tgcgaaaatt
     2521 cgaatcaagg ctgcgactgg tgagctggaa aacactgttt tgcttgttcg gttcaagttg
     2581 tgccaactga tttaaaattg ctattgcttt ggttgagagt ggcacggtgc gtgaataacc
     2641 gtttttggtt tgtggcaaaa atgcggtgcg tgcctgcagg tttatatgtt cccattttaa
     2701 accagcaatt tcacccgctc gcattgcagt ctcaatcgca aataatagtg ctgctccggc
     2761 tctttgttgc attaatagcg gtggctggtt agggctgtag ccggagacaa aaatcagttt
     2821 gtctatctcc tcatcgctat atcggcgagt tcttgctggt ggcgttttga ttttttccag
     2881 cgtttttaga ggattttctt tgagataatc ccattccatt gcttttgtaa agagtgccga
     2941 taaagtggct ctttctcttg agacggaaac cggctgcact tcttgcaagc gttggttttg
     3001 ccattggcgt aaatgctctt tggtgagtgc cggtaatggt atatttccca agttgctgcc
     3061 ggcaattctt agcaggcgat agcgttcttc ccttttgcca cgtttggtcg gagtgacctc
     3121 tttgaggtat ttgtcgatta attcggcaaa aagaatgttc ggggtggtgt tatattctcc
     3181 ggcatcaatt tgagcctcta aagcgtaagc ccagcggttt gcctctgttt tggtgctgaa
     3241 agtggcagtt ttataaatgc cttttttgcg gacttgtgct cggtatttgt tgccgttctt
     3301 aataatagta gccatttttt tattcctttg tgcatgtgtg cagtttaagt gtgcaaatgt
     3361 gtgcaaagga atgttaatag agatcataaa cgatcaataa atatcaagtt ttcatatcaa
     3421 aaatgatgtt tttattgatg ttatgctaca cttggggaag tgttttaaat caataagcta
     3481 ttgatttata aggggtattt ttggggttaa gcctgaatgg ggatattcag gcttaaaaat
     3541 aatggtgcga ctagctggac tcgaaccagt gacccccacc atgtcaaggt ggtgctctaa
     3601 ccaactgagc tatagtcgcg ttaacggtgt gcattctatt ggaaaaagga acttagtgca
     3661 atatgctttt ggtcgaatgc ttttatttta gacgcttttg ggtaaaaatt tgtttatctt
     3721 cccaacggag catggttaaa tggcttcccc aagcacagcc ggtatcaagt gcatagatgt
     3781 ttggacgagt gcatttgccc attaggcttg cccagtgacc aaagataatg tttttctgtg
     3841 taaataacgg attatctaag tcaaaccaag ccagcagttc ttgaggggct tgttcaagcg
     3901 gtaatttaca gtcaaaatct aaccgcttgt cggtgtagca aaaccgcata cgggcaaaca
     3961 cattgatgat ataacgccaa cgttcaacac tttgcaaatc ttcactccag cgttcgggct
     4021 tattctcata catttgggcg atgtagtccg cataattgtc actttgtagc accttttctg
     4081 cctctttggc acaagctagg gtagttgcta aatcccactc agggctgatt cctgcgtgag
     4141 tcagcaaaaa ttgatgtttg gggtgatgaa ttacaagcgg ttgatttctg agccaatttt
     4201 gcaaatcgag ccgatcttta gcctcaaaaa tagcatcaat cttatcattt ggttttaccc
     4261 gtttgatgcc aagcattgtg gcaagcaagt gcaaatcgtg gttgcctagc acggttttgg
     4321 cattgtttgc agagtctttc acaaaacgta aacaggctaa agagtcctca ccacgggcga
     4381 ctaaatcccc tgttaaaaag agttcgtctt gcttggggtt ataattgact ttttctaata
     4441 aaagctgaaa ttcgttaaag caaccgtgta ggtcgcctac aatataagtt gccattgttt
     4501 ctcctttgtt cccctaaagt tataaacaag cggttatatt ttagagaaaa tttgcaaaat
     4561 ctcatcaaaa tataaccgct tgaaatttaa atgatatttc ctacgattga gcgggtttct
     4621 aagcgtactt cggtgagttt cactttcacc gcttgcccga tctgataggc tttttcacct
     4681 ttaatataaa gtgcaagttc ttcttggcgg tattccattt cctctttgtt gtcgtgcaag
     4741 ctggagaatg gcacaaaaat ttgagcaccg ttttttatga ctttcgcacg caagccacca
     4801 cgggaaacat ctgcaatttc gcactcaaat tcgaccgctt gttccaccat tggggcaagg
     4861 taacgagcat aaagccagtc agcaatatca cgttctacta aacggttttg acggcgagct
     4921 tcttgtaaac ggcttaaaac tgattcttcc accgcttggc tttgtttgcc aagtaacact
     4981 tgcttgatta aacggtggtt taccatatcg ccatatttac ggatgggtga tgtccaagtg
     5041 gcgtaatcgg taatgcctag cccgaaatgc ggggcaactt cggctttaaa ttcagcgaag
     5101 gttaaataac gtcgtaaacg caactctaag aatttctctg ggtagtcttg aatatcacgt
     5161 tgcatttggc aatagccttc taaggttgct aaacgctcgg cggagtagcg ttcggcaagc
     5221 tcatcacgat tttcatcgct ggctaaagtt tggagtaaaa atgattttac caattcataa
     5281 tttttcggat caaaacctga atgggtatta aatacaccgg ttttggcatg ttggcttaag
     5341 aattttgcac aacaaatatt ggcaagaatc attgattctt cgatcatttg attcgcaata
     5401 cggcgatatt caacgtgaat atcttttacc gagccatctt catttaactc aaaggtataa
     5461 tcgccttgtt ctttgaatag caacgcattc tcggcacgcc attgaatgcg ggcttgagta
     5521 aattgatgta gccactcaat ttgttgtttt gtttcttcag actgaggttg ccacgcattt
     5581 tccacgcctt cgagataatc ggaaacatcg tcgtaagcca agcgatcttt tgattcgacc
     5641 caagcagagg taaaggttgt ctctttaatg agattgccgt ttaaatcggt ttcaataaag
     5701 ccaacgaggg cagggcgttt ttcattcggg acaagcgaac agagatcgtc tgagagttct
     5761 cgaggtaaca ttggaatgtt aaagcccggc aaatagttgg tgaaacaacg ctggcgagcg
     5821 gctttttcaa tatgggaatt ttctgggata taagcggttg ggtcagcaat cgctaccact
     5881 aaacgccagc cggttcgctt gccattttgc ttaattggtt cgatgaacag agcatcgtcc
     5941 atatcttgcg tgcttgggct gtcaatagtg gtaaagtaaa gatgagataa atcttcacga
     6001 gctaattcat cgtgtaattc atagtttttt tcatttgcga ccggttcacg aggctgttcg
     6061 tggcgggcaa gtgtgaccca ccaaggggca aaattatcag attctttaca gataaattgg
     6121 gtaacttgag caaagaaaaa acggtcgtca cgcaatgggt gcgtttttaa ttgtgcaacc
     6181 acccagtcgc cattttctaa tttttcagtg acttttttat gggtatttgc cgggatagtt
     6241 tgcttaatgc ttgggtgatc aaccgcaagt tgcaatttgc cctctttatt caagcgaact
     6301 tgggcaataa atctatccag cattggctca agtagtgaat caatttctac ctgttctttg
     6361 tcgccatcac gtttgactac ggctttcact gaatcaccgt gcattacttt tttcatttcc
     6421 gcaggtggaa taaaatagct ttttttatcg cattctaaaa aaccgaatgc tttgtctgag
     6481 gctttgacaa cgcctgcgac atattctttg cttgcttcaa tttgttgttt gagttgggct
     6541 aaaaggggat tgttttgaaa cataatttct cattttaaaa ataaaaaaag gtgctatcgt
     6601 tgcaccgaaa aaaacaatgg cattataacg gatttgaacc aagttcagca aataaatgct
     6661 gttgctataa cttataaaag ttagtagaat ataatccatt taaaaataat ggagactttt
     6721 caatgaaaaa attacttgca attgcaacag tattttcttt agcagcctgt tctactcaaa
     6781 cacttgaact atctcctgct aaggaagctc aatatgatcg tgttcaacac ttctttgttt
     6841 cagggtttgc tcaaaaacaa gagatagatg cagcaaaaat ttgtaatggt gcagataagg
     6901 taggtaaggt agaaactgaa actactttct ttaatggctt gttaggtaca attacttatg
     6961 gtatctattc acctcgccaa atccgtgtat attgtaacta atcctagtaa tttaaggagt
     7021 tgaaaatgaa aaaattgctt gctatgtctg tattaacagc cctgctgact acagcatgta
     7081 caacacaaac tgcccatatt ggcggcaaag ttactgataa tattaaacca actaagagtg
     7141 taactcagtc gttctttata ggtgggattg ggcaagaaga aacattgaat gttgtagagg
     7201 tttgtggttc caaagataaa gtgcagcagg ttgaaacagt actttcaggt ggggacattc
     7261 tattaggtct tgtgactatc ggtatttata cacctcgtac tgcaaatgta tattgtaagt
     7321 aatattttat taaaaaaata acggactcaa ttgagtccgt tatttttata ggaattactc
     7381 ttcgtcgcct aattcaccca ttgccattac gctgaagccg gcatcaacgt gtaacacttc
     7441 acctgttaca ccagaggcta aatctgagca taagaaagct gcagagttac ctacatcatc
     7501 aatagttacg gtgcggcgta aagcagcggt tttctcgaaa gcagaaagca ttttcttgaa
     7561 gtttttaatg cctgaagcag ctaatgtacg gatcgggccg gctgaaatcg catttacacg
     7621 aataccttct ttacctaaat cggctgccat tacacgggtt gcagcttcta aagaggcttt
     7681 ggctaagcac attacattgt agttagggat tgcacgctct gcacctaagt aacttaaggt
     7741 taaaagggtg gcattttcat ttaagaaggg gcgagcagct tgagccattg caacaaagct
     7801 ataggcactg atgtcgtgtg caatacgata accttcacgg gttgcggcat ttacataatc
     7861 gccgtctaat tgatcgcccg gtgcaaatgc gatagcgtga ataaaaccgt caaatttttc
     7921 ccaatgtttg cttaattcag taaagcactc agtaatgctt tcatcggttg ctacatctaa
     7981 cggaaggaca atgtctgagc caaattcttt ggcaaattct tcaactcgtg gttttaattt
     8041 atcgtttaag taggtgaatg caagttctgc accttgttgc ttcattgcgt ttgcaatacc
     8101 gtaagcgatc gaacggttgc ttgctaaacc tgtcactaaa atacgtttac cagttaagat
     8161 acccataaaa attcctcttt tatattgatt ggggcaaaat tgtgtcgatt ataacggata
     8221 taggaaaaac gggcaaatgg agttagcggc tcatcggatc agaaatccct ttttgaacga
     8281 ggtctcaaaa agggatttgg taagataaat taagcggtag tttgagcaat aatattttgc
     8341 tgcggtttga ttgccccggc taatttggct aattcttcca tacggttaat aataatatat
     8401 tttccttgta ctgaaatcat accgcttttt tggaaacgcc ctaataaacg gctgatagtt
     8461 tcaatggtta aaccaagata attgccgata tctccacggg tcatagttag acggaactct
     8521 tttacagaga aaccacgggc tgagtaacgt tgggaaagat tatacaaaaa tgcagctagt
     8581 ttttcttccg cattcatttt tgagagcaat agaatcattt cttgatcgct tttaatttca
     8641 ttactcatca aacgcataat ttgatggcga atttttggca ttttgccggc aagatcatct
     8701 aaaatatcga atggaatctc acaaatcatt gaggtttcga gtgcttgagc atagctttcg
     8761 tgctgcatat tggtaattgc atcaaagcca atcagatcgc caggtaaatg gaaaccggta
     8821 atttgctctt caccactttc acttaaggta taggctttta atgtcccaga acggatagca
     8881 taaagcgaac gcagttcatc acctgactta aaaataactt gcgatttttg aatcggtttt
     8941 ttacgctcaa taatattatc tagttgagtt aattccgttt cattaagagt aaaaggtaag
     9001 catagttggc taatactgca attttgacaa tgaattgtgc aagtatgacg tccgcttgtt
     9061 ttaggttctg atacaatttt catccattca accttaaatt agaaaagtat tcctaaattt
     9121 gatttagaac aaagtttacc attaaattta catgaagcaa agtataccaa gga
//
LOCUS       DANLUT010000100         9094 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLUT010000100 DANLUT010000000
VERSION     DANLUT010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9094
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(25..100)
                     /locus_tag="PXB38_001737"
     tRNA            complement(25..100)
                     /locus_tag="PXB38_001737"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(65..67),aa:Phe,seq:gaa)
     gene            complement(271..346)
                     /locus_tag="PXB38_001738"
     tRNA            complement(271..346)
                     /locus_tag="PXB38_001738"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(311..313),aa:Asn,seq:gtt)
     gene            complement(352..427)
                     /locus_tag="PXB38_001739"
     tRNA            complement(352..427)
                     /locus_tag="PXB38_001739"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(392..394),aa:Phe,seq:gaa)
     gene            complement(565..1656)
                     /gene="mltC"
                     /locus_tag="PXB38_001740"
     CDS             complement(565..1656)
                     /gene="mltC"
                     /locus_tag="PXB38_001740"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL5354034.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSPDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1673..1942)
                     /locus_tag="PXB38_001741"
     CDS             complement(1673..1942)
                     /locus_tag="PXB38_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL5354035.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVA"
     gene            complement(1946..3091)
                     /gene="mutY"
                     /locus_tag="PXB38_001742"
     CDS             complement(1946..3091)
                     /gene="mutY"
                     /locus_tag="PXB38_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL5354036.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLRSGSKVLLQKREAKGIWGGLFAFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            3175..3567
                     /locus_tag="PXB38_001743"
     CDS             3175..3567
                     /locus_tag="PXB38_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5354037.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3568..4437
                     /locus_tag="PXB38_001744"
     CDS             3568..4437
                     /locus_tag="PXB38_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5354038.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLCVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     SYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKITLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            4453..5166
                     /gene="sfsA"
                     /locus_tag="PXB38_001745"
     CDS             4453..5166
                     /gene="sfsA"
                     /locus_tag="PXB38_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL5354039.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIATTLTKKCEF"
     gene            5227..5748
                     /gene="hslV"
                     /locus_tag="PXB38_001746"
     CDS             5227..5748
                     /gene="hslV"
                     /locus_tag="PXB38_001746"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL5354040.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNHKHVIEEV"
     gene            5800..7125
                     /gene="hslU"
                     /locus_tag="PXB38_001747"
     CDS             5800..7125
                     /gene="hslU"
                     /locus_tag="PXB38_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL5354041.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKGGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            7201..8079
                     /locus_tag="PXB38_001748"
     CDS             7201..8079
                     /locus_tag="PXB38_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL5354042.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEDSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(8139..8855)
                     /locus_tag="PXB38_001749"
     CDS             complement(8139..8855)
                     /locus_tag="PXB38_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5354043.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTDEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGIAEPRKKQVLFSEPY
                     FPSSAAFIAKKDIDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
BASE COUNT         2690 a         1931 c         1837 g         2636 t
ORIGIN      
        1 ccgactgaac taaggaggaa ttgatggtgc ctcgaggcgg aatcgaacca ccgacacggg
       61 gattttcaat cccctgctct accgactgag ctatcgaggc aacgtcgttg cgtggtgcat
      121 tatgctgatt ttttcgggct tcgtcaaata caattctcaa aaatttagcg tttttgaacg
      181 cataatacta aaaattgagc aatttcttag tagttagccg gaaagctcaa aaagaaaacc
      241 ctgatgatta ctcatcaggg cttcagaata tggctcctcc tgcgggactc gaacctgcga
      301 catatggatt aacagtccac cgttctaccg actgaactaa ggaggaattg atggtgcctc
      361 gaggcggaat cgaaccaccg acacggggat tttcaatccc ctgctctacc gactgagcta
      421 tcgaggcaac gtcaacgtcg ttgcgtggtg cattatgctg atttcagctt gcaacgtcaa
      481 acgttttttt gcaaatttaa aaaaaccgct gctcaaatgt gcttttttta tacttttcgg
      541 ctaaaaaaca gcataattca cacactaacg aatattgcga tatttctctc tggcggtggt
      601 tacttttctt aaataatttc tagcttgaga agatggatga gcagtggtta aaattcgata
      661 aaccgcatca ggcgaaagat cgttaattct atcaatcgca gagtatcggt ctgaatcaaa
      721 cactcgtaat accgcacctg ctccgctatt gtatgcagaa atcattgcat agcgtttagc
      781 cacaggatct tcaattccat ctaagtattc atcacgcaaa atagtcaaat aaagcgtacc
      841 tgcatcaatg ttatttgatg gattataaag atattcacga cttggctgcc ctcccatacc
      901 tttacgggca aaaatatcac gcccggcggt acgaggtaca acctgcatta agccaatcgc
      961 attggcatag ctgatggcat aagggttgaa tgctgattcg acttccataa tccctaaaat
     1021 caaacttggc tcaataccat actgcttcgc cattttacgc accagcggta aatattgtct
     1081 ggcacgtact tcaatgtgtc ctgccaccat tttaatcgtt acaaagctca cagtttgacc
     1141 atttttcaaa cggcgtgttt gcaccttatt ttgcaacaaa taagtcgcaa aatcattggc
     1201 gatggcaaca ttggtaatat ttcgcccgaa ttgatcttca acctgtccgt ttaggaaagg
     1261 gttagagcta atcggtgcat cgcctgaggc aaataaatca atccctttcg ggtctctgcc
     1321 cattaataaa gtatgaataa tcgaattgcg tagatgattc tgattcccta aagtctcaat
     1381 cgtaatcacc ccttcttcaa acgaaatatg gctacgggtg taaaacttat ccgtatattt
     1441 cacataatct ttcttactgg caactaacag ctcgttactt ccccaaatat catcaatatt
     1501 gtgagaaaac tgccctgcca aaatatccaa accattggta tctttagaat aatctactcg
     1561 ggtagatttt ggcttcttag tcgatttatt gctcccacaa gcaataagaa acggaataat
     1621 tgccaacatc ggcaaatatt tagcatattt tttcattgtg atttaacctt tattatgcga
     1681 ccggcttata gccttcgatg atgatctctt taccttcaaa taaaaaattg accatctctt
     1741 gttcgagcag tttacggtgt tcggggttca tcatactgag ttttttctca ttgacgatca
     1801 ttgtctgttt tttaatccac tcagaccacg cttgcttgct gattgagtca aaaatacgct
     1861 tacccagctc ccccggataa agttgaaaat ctaaaccttc tgcctcttgt tttaaatatt
     1921 cgcaaaatac ggtacgagcc ataatttaat ccttaatctc atttttcaca ctgaatgcca
     1981 gctcatctaa aatacgttta accggcgttg ctaaacccac ttcgttatgt tggtgcaaat
     2041 cataccaata atccgcattt gaagatacct tagaaagata atttcctgct ttttcttcga
     2101 caacaagcgg tgaattttca cttgtttttt tcaaatcggt ttctactaaa accggggtaa
     2161 tatccaaatg aaaatggcta aaagtatgcc taaatgcagt taattgctgt gaaatttgca
     2221 aattttgcat aaaatcagac cgcttgagag cctctaagct ctcaaattgc ggaaacgcaa
     2281 ataagccccc ccaaatgcct tttgcttccc gtttttgtaa cagcactttc gagccgcttc
     2341 tcagcactaa aaaataggtt tgacgctccg gcaaggtttt tttcggtttc ttggcaggga
     2401 agctatccca cgcttgcatt gcattcgttt tacaattttc ttgtagcggg cagagcaagc
     2461 acttaggctt tgtacgggtg caaatcatcg cccctaaatc catcatcgct tggttaaagt
     2521 ctgccacttg ggtatcaggc gtcacacttt cgcttaattg ccaaaggcga ttttccaccg
     2581 ctttttcacc cgcccagcct tctactgcaa aatagcggct taacacccgt ttgacattgc
     2641 catctaaaat cgggtgtggg gcatctaaca cagaagacaa aatcgcccct gcagtacttc
     2701 tgcccactcc ggttaatgcc aacacatcat caaatcgggt aggaaattca ccgccaaact
     2761 catctcgaat ttgaattgcc gctttatgca aatttcttgc ccgagcgtaa taacccagcc
     2821 ctgtccacaa atgcaatact tcatcaatcg aggcattagc taagtcaatt acggtgggaa
     2881 atcgttccat aaaacgtgca aaataaggaa taacggtcgc tacttgagtt tgttgcaaca
     2941 ttacctccga caaccaaacc tgatacagcg ttttattttg ctgccaaggt aaatgtttcc
     3001 gcccatattg ctcaaaccaa gctaaaacag ctttggcaaa cggatcagaa gcttttgctt
     3061 tcgctaaagg aaatggggaa ttgctgttca ttaaaaatct tgaaatccga aaaataaatt
     3121 atcatactgc aagcggtcag ttttaccaaa aattttacac attaaggaaa aaagatgaaa
     3181 tcgcccattt taggtttcca ccacattgca ttaattgttt ccgattacga aaaatccaaa
     3241 catttctaca cccgcatttt aggggcagag atcatcgcag aaacctaccg agagcaacgt
     3301 gccagctata aattagattt acgctttaaa gatggctcac aaattgaatt attcagtttt
     3361 cctgaaacgc cgcctcgttt cacctcgccc gaaacctgcg ggcttcgcca tttggcattt
     3421 cgagtggaaa atattgaata tgccatcgca tttttagaac aacatcaatt accgcatgaa
     3481 gggatccgaa ttgatgagat caccggcaaa cgcttcacgt ttttccgaga tccggacgat
     3541 ctgccgttag agttttacga ggtctaaatg ttatatttac tgattgcaac cctgatttgg
     3601 gcgagttcat tcattgtagg taaagtggcg atttcagcct ttgaccctgt ccaaattatg
     3661 caaattcggc tgacgttagc ggcgtttatc gctctgccgt tttttattcc tgcgtataaa
     3721 aaaatccaga aaaatcagca cattaaagtc tggctgatta gttttctcac ttttcctctg
     3781 tgcgtgatct tacaattttc cggcttgaaa ttaacttccg cagcaagtgc cgtggcacta
     3841 ctcgggctaa acccgctttt aactgtgtta gtcagctatt tttgtttcaa aaaacaggca
     3901 accaggctcg attttatcct aagtttattt gcctgcttgg ggattttaat tatggcatcg
     3961 ggtagcgatg atagcggttc aatcaatgta ttaggattat tgcttgtaac cttaggcagt
     4021 ttaagtttta ttgtgggaat gtacctcagc aaagagattc tgcaatcagt aaaagtgatc
     4081 gatttaacca agatcacgct ggtgcaaggg gcaattaccg ccttacctat taccttactc
     4141 tttgcagaaa attggcaact gccaaccagt ctctcagcat gggcgagcgt agcatattta
     4201 ggcattattt gtaccagctt ggcaatattg ttatggaaca aaggcatcag ccaatcttcg
     4261 cctattcttg caggtattct actcgcactt gaaccggtat tcggactgct aatggcattg
     4321 gtctttttat cagaacagct cagtttagtg acttgggttg ggattattat tgttatttgc
     4381 accgccttac tctccgtttt gctaccgatg atgaaaagat acaagcggtt aatttaacag
     4441 gattttttgc aaatgaaatt tccccctctt tcccacggca ttttacttcg ccgttataaa
     4501 cgttttcttg ccgatattca gttgccaaat ggcgaacaaa ttaccctcca ttgcccaaat
     4561 accggtgcga tgacaggctg tgccaacccc ggtgatacag tttggttttc cacctctcat
     4621 aaccccaaac gtaaatatgc tcacacttgg gaactaaccc aaacccaagc gggggatttt
     4681 atttgtgtca ataccttgag agccaatcag cttgtacaag aagccttgga aaatcaatgg
     4741 attagcgagc ttgcggatta tcagcacatt ctgcctgaac aaaaatatgg cagtgaaaac
     4801 agtcggattg attttttgct caaatcggac cttctgccgg attgttttgt ggaagtgaaa
     4861 tctaccaccc ttttaaccga aaacggtgtg ggaatgttcc ccgatgccaa aaccgagcgg
     4921 gggcaaaaac atttgcggga gctgacgaaa atcgctgaac agggcttaca agcggtcatt
     4981 tttttcgcta ttttgcacac aggtattgaa cggtttgaag tggcaaagca gatagacccc
     5041 aaatatgccg aattattcgc tcaagccatt gcacaaaaag tgcaagttct ctcctataaa
     5101 atggcaattt cattggaaaa cgggcaacct attgcgacaa ccttaacaaa gaaatgtgag
     5161 ttttaagctt gaaaacacac agcatatccc catataagcc aaagttttta aaaagaagga
     5221 tttagtatga caacgattgt atgcgtgcgt aaagacggaa aagtggctat cggtggtgat
     5281 ggtcaggcaa cgcttggaaa ttgtatcgag aaaggcacgg tgcggaaagt tcgccgtttg
     5341 tataaagaca aagtggtgac aggctttgcc ggctcgaccg ctgatgcctt tattttgcgt
     5401 gatttattcg agaaaaaatt ggagttacac caagggcatt tagtgaaatc ggcagtggaa
     5461 ctggcaaaag agtggcgtac cgagcgtgct ttacgccgtt tagaagcgat gatgattgtc
     5521 gccaatgaca gcgagttttt attggtttca ggttcgggcg atgtgattga gccggagcaa
     5581 gatgtactgg cgattggttc aggcggtaac tatgcgaaag ccgctgctct tgcgttatta
     5641 cgcaccgaaa ataatttatc tgcaaaagaa atcgttgcgg aagcgttaaa aattgccggc
     5701 gatattgata tttacagtaa ccacaagcac gtgattgaag aagtttagtt aaataactct
     5761 ctccccttgt gggagagggt aattaattta aggaataaca ttatgtcaat gacaccccgt
     5821 gaaatcgtct cagaattaga cgcacacatt atcggacaaa aagatgcaaa acgtgcggta
     5881 gcaattgctt tgcgtaaccg ctggagaaga atgcagttgc cggaagatct ccgccaagaa
     5941 gtgaccccca aaaatatttt aatgatcggt ccgaccggtg tgggtaaaac cgaaatcgcc
     6001 cgccgtttgg cgaagcttgc caatgcccct tttatcaaag ttgaggcaac caaattcact
     6061 gaagtggggt atgtgggtaa agaagtggat tcgattatcc gtgatctagc tgatgtgtcg
     6121 atgaaattag tccgccaaca agcggtcgaa aaaaataaaa tgcgtgcaca agatgcagcg
     6181 gaagatcgca ttttagacgt attattgcca ccggcgaaag atcagtgggg aaatgtgcag
     6241 gaatccgaca ataattctac ccgccaaact ttccgcaaaa aattgcgtga agggcaatta
     6301 gacgataaag agattgaaat tgacgtggca gctcaagtga gcgttgagat tatgaccccg
     6361 ccgggaatgg aagagatgac ctcgcaatta caatcgctgt ttgagggaat gtcgccaagc
     6421 aaaaccaaaa aacgcaaaat gaaaatcaaa gatgcgttaa aggtgatgct tgatgaagaa
     6481 gcggcgaaat tagtaaatcc tgaagagctg aaacagcaag cgattgaagc ggtggaacag
     6541 cacggtattg tctttattga tgagatcgac aaaatctgta aaaaaggcga gcattcgggt
     6601 ggagatgttt ctcgtgaagg tgttcagcgt gatttacttc caatcattga aggctcaacg
     6661 gtaaatacca agcacggtat ggtgaaaacc gaccatattc tgtttatctg ctcgggggca
     6721 ttccaagtgg ctcgcccgtc tgatttactc ccagaattac agggtcgctt gccgattcgt
     6781 gtggagttaa aatcgcttac caaagaagat tttgagcgta ttttaaccga accgaatgcc
     6841 tcattaacct tgcaatatcg tgagttgatg aaaactgaag gcgtggagat tgagttcact
     6901 aaaggcggta tcagccgtat tgcagaaagt gcattccgtg tgaacgagaa aaccgaaaac
     6961 atcggggcaa gacgtttaca caccgtgctt gagcgtttga tggacggcat ttcgttcgat
     7021 gccagcgaac gccgtggtga aaaaatcatc attgatgaaa actatgtttc cgaagcgtta
     7081 aatgacgtgg tggaaaacga agatttaagt cgctttattt tgtagtttta agttatacaa
     7141 gcggttattt tagcgaaaaa tcttgcgaat tagccgcttt tcatattgtt agttgtaaaa
     7201 atgaaaaatc tatacaaatg gcctgctgca caatcgcttt atccaaatca gggaaagaag
     7261 tcttacgcag ggaaacgttt tcgttaccgt cttcgctctt ggttgcatca ttccaaaatc
     7321 aagcaatttg agcagttcgt tacacaaaat ccacaactga ttccgctctt aaatgctcga
     7381 ccaaattaca gctaccccgt ggctcaccgc tttttagata agcgtttcag tgcaaaacaa
     7441 cgcttacaaa aaatcacaga taacctgctg tttttaccgc aaaaattggc tcatttacca
     7501 cctctatggg aacaagcggt caattttggt gaaattattg cagattttga gttatggctt
     7561 aacatcaatg aacatcagcc gatggaaggt ttttgggcat tagaacttcg ccacagaccg
     7621 actaatcagc tagtttattt attaacattt ggtaagttag atgaagcctt gttgatagcc
     7681 gtaattcaag gtccgaattt tgaagattca aaagagctgg tgaaacaatt aaccaaaagt
     7741 tgccacggct tacgcccggc ctatttaatg gttgaaacga tgaaggcttt aacggctgtt
     7801 cttggctatc agagtttact aggcattcca cagaaatacc agaataaatc ccgctgggtg
     7861 caaagtaagc gctatgtagt ggattatgat gctatttttg cggaatcggg cggaaagccg
     7921 ggaaattatt ggcagttacc ccttgaattg gaaagtaaaa aaatagatga aattccaagc
     7981 aaaaaacgct caatgtatcg caagcgttat gaaatgctag ctaatttaaa gcagaccatg
     8041 gagcttatgc ttaaaactta tactggctta aatgggtaaa tcaaagaata caagcggtca
     8101 aaatctgcaa aactttgcaa aaaatgaccg cttacaagtt acttgccgcc catccattta
     8161 tcatagattt tttgatattc gccattctct ttaatcgttt ttaatgctgc attgaattga
     8221 tcaactaata cttggttttt caagtgagtt gcaatgccta aaccatcacc aaaatagttt
     8281 ggattattga ttttctcccc tacaaaatct agcccttcgt gttttcttgc catctcagcc
     8341 aataccggca catcgccaaa aatagcatca attcgcccat tttgcacatc taaaatagca
     8401 ttttgataag aggcataaga tttcacattg tactcttttt tctcttttgc taaatagtgt
     8461 tggtaagtag tcccattttg cacaccaatc gttttcacct tagcaaaatc tatatctttt
     8521 ttcgcaatga aggcagcaga gcttggaaag taaggctcgc taaataatac ttgtttctta
     8581 cgtggttccg caatacccat acctgaaatt gcagcatcaa attgtttttg ttttaggctt
     8641 tggattaagc tatcaaaagg ttggctatgg aatgtacaat ttgcattcat ctctttacag
     8701 atagcatttg caatatccac atcaaaaccg ataatttctc ccttctcgtc ggtcatttca
     8761 aatggaggat agcttggctc catcacaaat ttgatatctt gtgcctgcgc agtaaccaca
     8821 cacccgaata aaagggtcaa aagtgttttt ttcataaaaa gtccctgtgt tttcattata
     8881 aggattacca ctttaacgca gttactttct taaaaaaagt cttcttttca taaagtttgt
     8941 tttatgtcat acaaacacat caaattgaga tgtagtttct caatcctctt gattcctcta
     9001 tctcaaaaaa acaaccaaaa agaaaaaaga aaagtatatg ttacattaat attacaatgt
     9061 aattattttg tttaatttcc ctacattttg tata
//
LOCUS       DANLUT010000101         9048 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.102, whole genome shotgun sequence.
ACCESSION   DANLUT010000101 DANLUT010000000
VERSION     DANLUT010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9048
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            126..1772
                     /locus_tag="PXB38_001750"
     CDS             126..1772
                     /locus_tag="PXB38_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5354044.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALVSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            complement(1821..4766)
                     /gene="ptrA"
                     /locus_tag="PXB38_001751"
     CDS             complement(1821..4766)
                     /gene="ptrA"
                     /locus_tag="PXB38_001751"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL5354045.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(4902..8192)
                     /gene="recC"
                     /locus_tag="PXB38_001752"
     CDS             complement(4902..8192)
                     /gene="recC"
                     /locus_tag="PXB38_001752"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL5354046.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTIDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            complement(8241..8534)
                     /locus_tag="PXB38_001753"
     CDS             complement(8241..8534)
                     /locus_tag="PXB38_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL5354047.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            complement(8527..>9048)
                     /locus_tag="PXB38_001754"
     CDS             complement(8527..>9048)
                     /locus_tag="PXB38_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL5354048.1"
                     /translation="LYPQDKTQICQKFQKEQISQEDLSDKQFRFLQYQFACQFHSLFK
                     DKKPTKEKYIHFTRLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIVLAKNAINEN
                     LPQDFYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAELEARYSAWRY
                     LPYSEHLMGAVDD"
BASE COUNT         2555 a         1963 c         1811 g         2719 t
ORIGIN      
        1 aaaataagca tccgtacttt attttttata tcatttcgtt ataacaaaat gctttttgtt
       61 ctttactcct cattgtggaa aaggtaatct tcgtaagtta atcctaagat taagcggaga
      121 ataatatgaa atttccaacg ttaaccaaaa ttagtgcaag cgttttagcg gtattagctc
      181 tagcggcttg cgatgataaa agcaacgaaa ataaacctac tgcggcagca gcaaaaccgc
      241 aaaccgagaa aacctttgta aactgcgtta gccgttcgcc aaccggtttt agcccgattt
      301 taatgatgga cggtttatct tataacgcca gctcgcaaca aatttacaac cgcttggtgg
      361 aatttgtgcc gggtacaacc gatattgaac cggcattggc agaaagctgg gaaatcagcg
      421 aagacggctt aacttacacc tttaaattac gcaaaggcgt gaaattccat tcaaacaaag
      481 acttcactcc aagccgtgaa ttgaatgcgg acgatgtagt attttcattt aaccgtcagt
      541 tagataaaaa tcatccgtat cacaccgtct ctaacggcac ttatccgtat ttcaacgcaa
      601 tgaaattccc gacattattg aaatcggtgg aaaaagtgga cgacagcacc gttcgtatta
      661 ccttaaccaa acgtgatgcg tcattcttat ccagccttgg tatggatttc acctccattt
      721 attcggcgga atatgcggat aaaatgatga aagccggcat acctgaagcg gtagatacca
      781 cgccaatcgg cacaggtccg tttgtgttta gcggttatgt gctagaccaa gccagtcgtt
      841 atgtagcaaa caaagagtat tggaaaggta agcctgacat tgaccgtttg atttttgaga
      901 tcgtgccgga tgcaacaacc cgttatgcga aattacaatc cggtcaatgt gatttaatgg
      961 acttcccaaa tgcaaccgac attgagaaaa tgaaaaatga tccgaaaatc aatttacttt
     1021 ctcaaccggg tttgaacatt gcttatgtgg cattcaatac cgaaaaagct ccgtttgata
     1081 acgtgaaagt tcgccaagcg ttaaacttag cagtggataa aaaagcgatt attgatgtag
     1141 tttaccaagg taacggtttt gcggcgaaaa acccacttcc gccaaccatt tggggctata
     1201 acgacagctt agcggattca gaatataacg tggaaaaagc gaagcaacta ttagctgaag
     1261 caggcttccc gaacggtttt gaaaccgaat tatgggtgca gcctgtggtg cgtgcttcta
     1321 acccgaaccc acgccgtatg tctgaaatta ttcaagccga ctgggaaaaa atcggcgtaa
     1381 aagcaaaatt agtcacctat gaatggggtg attacatcaa gcgtaccaaa gccggtgaat
     1441 taaccgccgg aacttacggt tggtcgggcg ataacggcga tccggataac ttcttatcgc
     1501 cactattcgg cacgccaaat atcggcaaca gtaactatgc tcgctttact aaccctgagt
     1561 tagatgcgtt attagaaaaa gcattagtct catctgataa agcagaacgt actaagttat
     1621 acgagcaggc acaggttatc ttaagagagc aagctccgtg gattaacgtg gctcactcaa
     1681 ttaactttgc cccaaccagc aaacgtgttg aaggctacaa acaaagtccg ttcggatata
     1741 cttacttata tccggtgaaa attgtggatt aaaaaatgag gggcgaaaat ttttcgcccc
     1801 taactctctc taataactct ctaataatcc ttaatctcaa actctcgttg tagcttttca
     1861 atgctttcga tctgttcaaa accgtcaaat ttcgcaacgt cttcagcttt ggttttggtg
     1921 ccgacagctt ggctgacaaa cacgaagcct tgcttttcaa tcacagcttt ttggtaaaat
     1981 gccacaatat ctgctttggt gagtgctttg gttaattcga tcacctgttg caagcggtca
     2041 aatttcgggt tatttctgct aaagtctgaa ccgaactcag aaaactcttc cgctaaagac
     2101 tccggtttat attgcagttt ttccactagg ctatcacgat attttccaaa ttcctcatca
     2161 gatagatttt ttaaacgttc gaaactttgt gtaaagaaac gttcgttatg ctctaaaatc
     2221 cctgccggtg tggtattcgg gctttgtacc ataaactgga taccggcggt tttcccgatg
     2281 atattatctg tcgcataaac cacatagcct agttgcttat cagtacgcaa atcatcaaaa
     2341 taccaacggg aaataatgct tctgagcaat ttggctcgag taaggctttc cagctcgtta
     2401 tagccgttcg gcataaatgc cattagcaac gcattatctt cattcggcac gcttttaatc
     2461 acattaatct tacgctgact ggtactcaca tccacatact gtccggtagc atttgcagat
     2521 ttttggtttt ttatgaccgc ttgtaaatcc tctgccagag cagaaacctg ctcagccgac
     2581 aaattcccca ccgataacaa cttaaagccg ctgctctgct gcaaaattcg ctggcgtagt
     2641 tgctcaatat ccgcaagggt aatgctatca atcatctcac gctgtttcgg cacatcaaaa
     2701 taagggtaag aggcaaaacg gcttaatgct gcattagctt gattaaggct gttttctttt
     2761 tcgttacgat ccagctcttg gtgcaaacgt tgtttagcct gtgccaacac gtcttcgtta
     2821 aactcaaagc ggctgaactg ttttacgctg tctagcatta atttagccag attttgggta
     2881 taaccctctg cacttaaggc taaaccgttt gccgccggag ctaaacttaa attcataccc
     2941 gccaccgaag actgaaaatc taacttggtt tgggctaaat tgttcatata acccaaaata
     3001 gacgctgcgg tcaggctctt taagtcatct tttctcgggc gaatattaaa gccaacgccg
     3061 attttagcct tcggttcatt ggtaaaatac acgctcggca ttgtatagat taaattcccc
     3121 gcttggtcgt taatcaattt cggtttagtt aagccggttt cgaccttgtt taaggtaaaa
     3181 tcggtagtga aatacgggtt caattcaggc aaattgagct gtggattttt actgaaatcc
     3241 agccattttt gcttttgttc ttgcgtgatt tttgccaccg aataacctgc ttcaaaataa
     3301 ggggttttct tgtcggtttt ggcagtatcg ctgactaaca taatgcgggc attatcaata
     3361 ttcattgccg ccaattttgc tttaattgcc tcgttatcca ttgtttcggt cagataaggc
     3421 tgatcgataa cgtgttctaa cgggaaatgg agcatttgat cggcaataaa ttccacgaaa
     3481 tccatatttt tttccacttg caaatgttgg aaatcctgct tcaggctctc tttcacttcg
     3541 ctaaaatagc tctcttgaat gccttcttgt ttgatcttct caatttgttg gaaaaccaat
     3601 gaaataattt gatcttgctc gctcaaacct ttgtctgtca gttcaatata gatgtcaaac
     3661 gagcctcgat cccgcccgat attggcactg ctaaccgcct caataccgcc gtcagacaac
     3721 ccctgtttaa tcaagtaatc cgaaagcgtg ccgtcggtat tattgtttaa catataagca
     3781 atatatttac cggttttgtg cttaaactgc atttcgtcat tcggaaaatc aaagccaatg
     3841 actaacattt tgttggattt caccggctta tattgaataa ataccgattt gtcctcatca
     3901 cgataacgtg gctcagcggt ttgcggtatg ctgaaatgtt tgttttccat tttgcctaaa
     3961 gtgttggctg ccaattttgc catctgctca atcgattgat tggaataaag caccacttta
     4021 aacagattcg cagaataatg ctgtttataa aattgctcca actcggtttg taatttgcta
     4081 tccggcttgt cagataacgt ctctttattg cctaccgcaa atttggtagc aggatgagcc
     4141 gggtttgcgg tggctaaatt aacactgtgc aataaatgcc catcgtgcga tttagctcgc
     4201 accatctccg cattgaccgc attaacctct ttcttggcgt tggtttccag caataacggg
     4261 aaagctaacg tatccgccag tcgtgttacc gcttcgctaa aggcttcgtt attgacttgt
     4321 agataatacg ccgtgcggtg agaagcagtc gaggcattat tcataccgcc atttttggtt
     4381 aaaaaaccgt ctaagctgtt ggtttccgga tagtttttcg agcccatcaa gatcatatgc
     4441 tcaagatagt gggctaaacc ttgctgagaa atcgggtcat ccattgagcc aatcggaata
     4501 atggcagaca tcaacgattt attcgcttga ctgtcggaaa tcagtagcac ttccattcca
     4561 ttatcaagtt taataccttg ataaatcgct ttatcattcg ggcttttgtt aatgctctgt
     4621 ttaatcagct caaaaccgag ttgggattgg ggttgactag cggtcgtttt ttcagaattt
     4681 tttgcaactt ccgcaaatgc agggtaagtc atcacattga gggcaaaagc cgctgcaacg
     4741 aattgggtaa gaaaagataa tttcatacat ctccttttga aattagcatt gtagtaataa
     4801 attgacagta aaatacggaa aaaattctat ttttataggt aggcgaatta ttattcgcct
     4861 tctcattttg caaattttca gccaaaaacg accgcttgta gttaatcgcc tttcgctatt
     4921 ttctgattca ttaagctaaa ccagctttga gtacgttggt gaatcgcttg agaatccagc
     4981 tctttagttt gagcgagaag ccgatggaga tagctgccgt ctcgctcatc tttctctgct
     5041 aaatcgataa gaacttgttc gctgtttgtg ccatcacctt tgagatattc ctcaattcgg
     5101 tcgtagatca ctaactgggc ttgcgataat ccgtccaaat aagcattcaa ataaatgctt
     5161 aattgcgata atgcctctat ctgcgagacg gtttcaaagc tcaacacacc aacttgctca
     5221 ccctctcggt aatagaattt caccgttttt tcagggaaat aggcacacaa taataaatgg
     5281 tagatccaag tctgaatctt gtctttatct cgtaaatgcc ctactcgcca tagcaccact
     5341 tcattctgat ataggttggc aatattgccg tttagggtga gggtttggcg ttccagctca
     5401 acctcccgat taacactcaa aatacggctt tcgctggcta aatagtggct taacgccgct
     5461 tgcatttcgg taattttgcc gatcaaatct tgtgtggcaa tttgagcaaa ataagaagca
     5521 ggtaaattgc ctttgagttg ctcttcggca aaaaaacgtt gctgttgtgc taaatttatc
     5581 gttaataatt cgtttaaaat ccggtagtta tccagccccg acatctcaaa aatttcgctt
     5641 tcatcaatgg tgtcatcata agtgttaaac gaaatcccca acacttttag aaagaaaaac
     5701 ctaatcgggt tttgtacaaa agagattaat tcatcaagtt ctagcgaagc cacgctttca
     5761 ttggttaaag gctcactaag aaaatcttgt acggcaacag tcggcttgat aatccactct
     5821 gcgttataag cgtgatctcg tgggtgggta aaattctttt tgctaaacac acttaaaggt
     5881 tgttttctga ccaaaacttc cacttcatcg cttaattgtt gcttgcattc aggcgttaaa
     5941 gcttcattca ttgcatctaa cagttgggaa accaaaatcg acggtagcat ctctttgccg
     6001 tctttttgcg actgcccgat atagctgatg taaaacattt gctgagcgga aagtaaggct
     6061 tctaagaaca agtagcggtc atcatcacgt ttggcacggt ctcccttttt cggggcgtac
     6121 tgcattaaat caaagctatt gatttgttgt tggcgaggga aatctgcctc attcataccc
     6181 agcaagcaaa ttaccttaaa cggaatcgcc cgcatcggaa gcaaggtggc aaaattcacc
     6241 cgtccgacca agaaattaag ctgctgtgaa tgttggctga gctgctgctc aaacaataag
     6301 gctaaaacct caatttgcag atcgtctgaa aaatgggttg cggaaatttg ctcgataatc
     6361 tgatcattca cattattcaa caataaaatt gatgcagcat tttcggcatt ttcttgatac
     6421 agatcagcag tcaaattttt tattgcctgc tgccacgctg ccaacggctg tggcgtttgc
     6481 agaaagttta cccacgctaa taaagcctca ataaaagagg caagtcgccc caccagctcg
     6541 gcatttaagc catagctatc cccaaaggca agggtgtttt cccaaatccc ctgctcttct
     6601 ttcaggcttg agccaagcaa taaacggttt agcccgtttt cccacgaatt gtagttttgc
     6661 cagtgaggtt gctcgatttc tacacccgaa cgtacgccgg catttctcac ccaaacccgc
     6721 agggtatgaa tatcttccgt actaaagcca aaacgggttt ggatcgcatt cacttccagt
     6781 aaatcaaaca gttcttcggc attaaacggg ctttctttca ttgccagcag ttgcaggaaa
     6841 ctgtggataa tcggatcaac ctgcgtaaat gcttggtcgg ataatgaaaa aggaatatag
     6901 cgaggatccc gattaccagt attgtagcga gaaaacaccg catcaatgta aggagcgtat
     6961 ttattaatat ccggcgacat cacaataata tctttcggca gcaaagtgct atcttgctca
     7021 aacaaattca ggagctggtt atgcaacact tccacttccc gcattgggct gtggcacgaa
     7081 tgaatttgga gtgaattatc ggcggttaaa tcggtaatag tggcgtcatt ttctaagctg
     7141 aaaatctgtt ttttgagttt attgaggttg ctgttttcct ctggttcgac aaagacatca
     7201 atggtattcg gctcaaattc gattaattga gctaagaaat cccgcccttg tttgccccaa
     7261 agattcagta gtttatttct ttgctccgcc aataagttat ccagatcgtc ttgcgaaatc
     7321 ttgtggctta acgccaattt ttgccacact ttttcttcca cactgtcgcc ccaatatttt
     7381 tcgcttgggt taaaaaagaa caggtgaata tcgcaatgct cgctgagttt cttaaacacc
     7441 gctaactgta atggcgagaa ggacgaaatc ccaaaaatga aaatgcgttt tggcaatttg
     7501 gctttttccg tttcagtaag gtcatctaac ttagcgaagt aattttgttg caaataggca
     7561 cggtgggagg tagtaaaaac ctgctcatca gattccgatt gcagatcaga tacaatctgt
     7621 tgccataaat ggctttgcca tttcatatcg gctcgaatta agtcaaaatc aatcggctta
     7681 gcggcagttg caatttttat ctcattttcg atcgcttgta agttgccttc ttcccagcta
     7741 accagccaat gggggcgata caccaaatat tggtcgaaca attcggcaat tttggcagaa
     7801 agttgataga gcttaagctg atactgttct ttattaggtt gatcacctaa ataacgcttt
     7861 agcggagcaa actccgatag tgtcaagcaa ctcggcaata accgcataat ccgccaaacc
     7921 aacgaactac gctcaaaaat attctctttc ggcagctccg ggaacaacag ccgatactgt
     7981 tgccataaaa atgtagtagg gtagagaaaa tcgcaattcc ccatcacacc gtttaattca
     8041 gcaatctgca tttgtagcca ctgtgccatt ccctgacttt ggatcaaaat ggtttccggc
     8101 tcaaacggat cttcaagtgg gtttacctgc tggattttca ccagcatctc cgccagtgat
     8161 gaaatttggt tggattggta aagtgtaaac ataataacgc ctcgctaatt gaattattgt
     8221 cctccaaagc gagggacgat tcaatcatta ttcagctcaa ttttgcctaa cggaaagcga
     8281 atggttaagc gattgccaga gcattgaatc tgatagcgaa tctgattttg agtaatactt
     8341 gattcacaat ctaacccggc taatttgagg gcaagctgat tttctaaaat cataaccgct
     8401 tgttgctgtt ggaaatgttg atttagcctg tggttttgtg ccgattgcca ctggctgaaa
     8461 ctcaacacca caatcgcaaa tagcgtgatg gcaaccaaaa gcgacaaagc cgtttctgct
     8521 ttatatttaa tcatcaaccg ctcccatcaa atgttcggaa tatggcaaat atcgccaagc
     8581 ggaatacctc gcctcaagct ctgccagtac ctctttttta aacgttaaat ttcgctcctc
     8641 tcgggcatta tcataagagg aataaagcgt gccgtacatt tttttgccgg taatatcaaa
     8701 cagatagtcg gttatcacaa tgccgtaaaa atcttgcggt aagttttcat taattgcgtt
     8761 tttagcaagc acaattttag gctcacgttc actgctacta ggtaattcag ctaaagaatg
     8821 aatagtataa atctcttggt ttggcacatt tgataaatct aaataatccg ccaaacgggt
     8881 aaagtgaata tatttctctt tagtcggttt tttatcttta aataaactat ggaattggca
     8941 ggcaaattga tactgtaaaa acctgaattg tttatcggat aaatcctctt ggctgatctg
     9001 ctctttttga aatttttggc atatttgcgt tttatcttgt ggatataa
//
LOCUS       DANLUT010000102         8851 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLUT010000102 DANLUT010000000
VERSION     DANLUT010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8851
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..188
                     /gene="zapB"
                     /locus_tag="PXB38_001755"
     CDS             <1..188
                     /gene="zapB"
                     /locus_tag="PXB38_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL5354049.1"
                     /translation="KIKQAVETIQLLQLEVEELKGKNDAAKQENDTLRSEYEQLKVEQ
                     QNFQDRLRSLLGQIDNV"
     gene            244..825
                     /locus_tag="PXB38_001756"
     CDS             244..825
                     /locus_tag="PXB38_001756"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL5354050.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(916..2034)
                     /locus_tag="PXB38_001757"
     CDS             complement(916..2034)
                     /locus_tag="PXB38_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL5354051.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2124..3572)
                     /locus_tag="PXB38_001758"
     CDS             complement(2124..3572)
                     /locus_tag="PXB38_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5354052.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYR
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3664..5361)
                     /locus_tag="PXB38_001759"
     CDS             complement(3664..5361)
                     /locus_tag="PXB38_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL5354053.1"
                     /translation="MLLTIITFLVVTGLVGYISWQKTRNDDLSTSKGYFLAGRGLSAT
                     IIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELIRYAKKVSAVMAVITMIF
                     GPLLMFGSDGIFLLTKRFAGFVNIPIVALFAVGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGTFLKRATPYEDNKINHANVDLTGWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKVVN"
     gene            complement(5505..6056)
                     /locus_tag="PXB38_001760"
     CDS             complement(5505..6056)
                     /locus_tag="PXB38_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL5354054.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKACDYFGFRTFFGNSTYHCSARVLQPAELIRITPLNFMEF
                     WANNSDLIISLLKQLSTELQDAEHRLSMVSYQKTQERVISSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6155..6952
                     /locus_tag="PXB38_001761"
     CDS             6155..6952
                     /locus_tag="PXB38_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005636253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5354055.1"
                     /translation="MTMAVIIILIICGVVVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKPKPKEAVSNATMCSLGGLIAGITGIGGGSIMAP
                     IVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFAIVGI
                     VVMSSLFTVYFSMKLRNILSPELTTKLLGMILFGIACYTGFLQYFFI"
     gene            complement(6967..7659)
                     /gene="tsaB"
                     /locus_tag="PXB38_001762"
     CDS             complement(6967..7659)
                     /gene="tsaB"
                     /locus_tag="PXB38_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL5354056.1"
                     /translation="MKSTILALDTATEACSVALQHNGNITFLEEISPRSHTQRILPMV
                     DELLHQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLSVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGAEWNEVVAEQVCSPEAAIGQFQVSEET
                     VVVGTGWAAYLQFSEQNLPLVISDITLPSSRYMLSIAETEILKGNTLSALEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7742..8824)
                     /gene="aroG"
                     /locus_tag="PXB38_001763"
     CDS             complement(7742..8824)
                     /gene="aroG"
                     /locus_tag="PXB38_001763"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL5354057.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAQAVEKRRQFAK"
BASE COUNT         2446 a         1971 c         1896 g         2538 t
ORIGIN      
        1 aaaaaattaa acaagctgtt gaaactattc aattacttca attagaagtt gaagaattaa
       61 aaggtaaaaa cgatgcagcg aaacaagaaa acgacacctt gcgcagcgaa tatgaacaat
      121 taaaagtgga acaacaaaac ttccaagatc gtttacgttc acttttaggt caaatcgaca
      181 acgtttaatt ctattttcag cacaaacggc taaattttta gccgtttttt atttgttaca
      241 gctatggcaa aactctattt ttactactcc tcaatgaatg caggcaaatc tactactctg
      301 cttcaatctt cttataatta ccaagaacgt ggaatgaaca ctttagttta taccgccgct
      361 attgatgacc gtttcggtgt ggggaaagtc aactctcgta tcggtatttc acaagaagcc
      421 aatttattta ccgctgatac caatctattt gcggaaatta aggcattaca ctcaaacaaa
      481 gcgttacact gtatcttgat tgatgaggct cagtttttaa ctaaaacaca ggtttatcaa
      541 ttaagtgatg tggtcgataa actcaaaatt ccggtgcttt gctacgggct acgcaccgat
      601 ttccaagctg aattatttga aggtagcaaa tatttgttgg cttgggcaga tgagctggaa
      661 gaactcaaaa ccatctgtga ttgtggcaaa aaagcccatt tcgtcgttcg attaaatgaa
      721 aaaggcgaag ccattaaaga cggtgaacaa atacaaatcg gcggcaatga tagatatctc
      781 tctgtttgcc gttatcatta caaacaaaag ttaggtaagc tataagctac aagaagcagc
      841 aagcggttaa attttcggga atttttgcaa attttcagcg aaatttaacc gcttttttgt
      901 gttatttacc tctctttact ttcctgcaaa ccgaatttgc tcactcattt gtctcatcac
      961 actcgaagtc tcggcaaaaa actgttggta agaggggcaa aggtagttgt ggttttcgct
     1021 gtttgcttgg gggacgatgc ggtgtttggg gcagccgccg tggcaaagta tgcggaattt
     1081 gcagtttagg caggcttgcg agagttttgc ctgtttattc tgcccgaatt ggcgttgggc
     1141 ggctgatgag acgatctctg ccaactgctg ttggttgagg ttgccgatgt ggtaatcggg
     1201 atagacgaaa tggtcgcaac tgtacacatc gccacaggct tccaccacca gcgagctgcc
     1261 acaggtcggg cggaatacac agttgttgga gggatagcca agccattgcc cgagcaggtt
     1321 atcaaactcg atcacaaaaa tctgcccacg gtcaggcagc cattcgtgaa aaacatccac
     1381 taaaaattgc ccgtagcctt ggggcggaac ggaaaagggt tgtaattccc ccttgtggct
     1441 ttccaccacc ggaatgaact gcatataacg gctaccgagg gctttgaggg cttgataggt
     1501 ttctctgccc cgttgccagt tgcggtcgtt caccaccgtg agggtgttaa attccacgcc
     1561 aacctctttc aataaatcga ccgcactttt cacccgttca aaggtcggtt taccgttggt
     1621 ggaaatgcgg tagcggtcgt gaatgtcgct cagtccgtca atggataagc ccaccagaaa
     1681 atgattctct ttgaaaaagc tcgcccactg acggtttagg gcaatgccgt tggtttggat
     1741 tgcgttggtg atctgcttgc cgtttgcaaa tttttgttga tatttgaccg cttgtttgta
     1801 gaaatctaag cccagcaggg tcggctcgcc cccctgccac acaaaatcca cccgttggct
     1861 ttggttggct tcaatgtaat gacgaatgta gttttgcagc gtttcatcgt tcataaactg
     1921 cgatttttct ggcggaatgg tctgttcctt gctcagataa aaacagtact cgcactgaat
     1981 attacagtga aaactgctgg gttttgccat taggtggaag taggtggtgg tcattgtatc
     2041 tctaaattgt aggggcggac tttatgttcg cccattgttt acattaattt tcgggcgggt
     2101 ataaaacccg cccctacaaa caattatatc tcatcaataa tccgatacac ccaattttcc
     2161 agtgggtcgt tgaggcgttt catttcctgt cgcatttctt ccaacatctc ttttttcacg
     2221 gctcggtagg cttcgtcata aaagaggttg tgcatctctt cggggtcttt tctgacatcg
     2281 tagagttcac aacggtcggt ggcgttgaag actaatttgt aatccttacg ccgccacatt
     2341 cgctgttcaa aatagacaaa atgccctgcc agttggcaca acaagccttt acggtcgttg
     2401 ttttggcttt gtctggttat cggcagaata ctctcgcctt ggaaagcggt cgggatcggt
     2461 tgatttgcta catcatacac ggtggaggtg agatcgtgca aataaacgag gttgtcatcg
     2521 acttcgttca cccttgtaga gtgtggatct ttgataatca gcggaatgtt gtaggtggtt
     2581 tcaaacataa actcgccttt ttcgatcatc ttatgcgccc ccatcgcatc gccgtggtcg
     2641 gcggtagcaa cgaggaaggt attttcatag agattgttct cttccaagaa acgaaacagc
     2701 tcgccaatgg catcgtcaat cagcgtgatg tagccccaga atttagaaat cacctctttc
     2761 caacgatctt cgctcgcctc ccacattccc cacatttgtg aaatggtgcg gaagtggttc
     2821 ggtttgccct caagcggttt gaagaaactc tcgtccaata ccacttggct tgggtcatac
     2881 attgaataat acggctccgg cactacacac ggagtgtgcg gcccccagaa gttgatccac
     2941 gcaaagaacg gttttttctc atcaagggag gcttgaatgt attttttcgc ctcgtcaatg
     3001 ataaaccact ctattgtctg ctcgcgactg ccggaaagca aaccacagag ttcctgcaca
     3061 cgcaggtgtg gattgtcgcc aaaataggct cgactgactt caggtgcgtc atagcctttt
     3121 tccgccagcc attcacggta gcggttggag tgcgttggcg gctgattgaa cacgaggttt
     3181 ttatacactt ggctacccgg gtagccatag ccgtcaaagt tatgaccggc gatgccataa
     3241 tcttcgggaa cggattttgt accaacgtgc catttgccga tcacaaagga gttatagccc
     3301 tccacgccgg caatattagg gttttgttgt ggaatttcgc ctgtgccgcc tttttcgccg
     3361 tttttgataa tcccgtggct ggacggcatt aagccggtaa acagcgaggt gcgagccggc
     3421 ccgcagaccg aagccggcgt aaaggcgttg ttaaaccgaa tgccgtcttt cgccaagcga
     3481 tccaaatttg gggttttcac cacctgatgc ccgtaagtgc cgagcatatc tttacgcact
     3541 tgatctaaca aaatatagat gatgttattc ataaatgacc tctttgttag ggcaagagcc
     3601 ctgatgaaat agtcttccaa atatacactc ccctctttag aaaagagggg agtgtatatt
     3661 tggttaattc acaacctttt tacctttaca ttttgcaaaa aacacaacac aaaccaccgc
     3721 ttgtagcacc gcatacaccg ccagcaccat cgctgggttg ccgtctggcg aggctaaacc
     3781 gagcggagaa aggaaagcgt atagcgtgaa taagcccaat acgatagaag ccactgccag
     3841 tggggcgtat tcccaaccgg ttaagtccac attagcgtgg ttgattttgt tgtcttcgta
     3901 tggggtcgca cgttttaaga aagtgcctaa aatcagcatt aacgccacat cgaacacgaa
     3961 caaaccggct tgcacataca cgaagttgat ttttacatca aacacccaaa cgatgcagaa
     4021 gtagagaata acgtgtgcga gcaaggcaat gcgtgcggct tttcctgaga cggttttgtt
     4081 gaataacccc acagcgaaaa gtgccacaat cggaatgttc acaaaaccgg cgaagcgttt
     4141 ggtcagcaag aaaataccgt ctgaaccgaa catcagtaac ggtccgaaga tcatcgtaat
     4201 caccgccatt accgcagaga cttttttcgc atagcggata agttccgcat ctgtgaactg
     4261 ttttttgctg atagacggta gcaagtcttt acagtaaatg gttgccgctg agtttaagaa
     4321 cgagttgaag gtactcaaaa tcgccccgaa cagtgcggca ataaagaagc cttgtagcac
     4381 ggttgggaaa gttttattca ccaattcagg gtaagacaca tcaatcggtt tcaagccctc
     4441 acctaaaata tggaagctga gtaagcccgg taagtttaag ataagcggta gcaataataa
     4501 gaacagtgcc gcaattaaga tccctttttg accggctttt aagtctctcg cccccaaggc
     4561 acgttgcaca atggcttggt tggtcgtcca gtagaagaaa tgcaccacca taataccggt
     4621 gaaaatggtc ggccacggca ctgcatcggt ggcactaccc accgcattcc atttttcaac
     4681 gtgagtagtg gtgatgattt tcaccccttc tgccatactg ccattaccta aatagataag
     4741 tgcaaacacc ggcactaata atgccccaat gactaacaag accgcattcc aagtgtctga
     4801 caccgccacc gcttttaagc caccgaagat cgcataaatc gccccaacaa taccaatcgc
     4861 aatcaccgtg taggtaatcg ccgccccgta gcttaagccg aaagcggttt caaggttgaa
     4921 gattttattg aaggcaatcg caccggtgta aagtgcggtc ggaatgacga tgaaaagata
     4981 gaacaccaaa aacaagcccg acataatcaa acgggtttgg cggtcgaaac ggttttcaaa
     5041 gaactccgga atggtggtgt aaccgttgcg gatatatttc ggcaacagat aaagtgccaa
     5101 gaagcaaagc ggaatgaccg ccggcacagt ccacgcaata atcgagaaat taccggcata
     5161 agagttggca ttcacgccga taagttgctc ggtagaaagg gaagttaaga ccattgaaca
     5221 gccgataatc gtagcactca agccacgccc tgccaagaaa taacctttag atgttgaaag
     5281 atcgtcattt ctggtttttt gccaggatat atacccgact agtccagtca caaccagaaa
     5341 agtaattatt gttaataaca tattcttcac ctcaatatga ctatataaat gacatatccc
     5401 attagagacg gcaatagcat aaatcttatt tttaacgata gaatatgatg tttgtcataa
     5461 tagatatgtg atggtgatca caactatgaa taatttatga caatttaact gattttcttt
     5521 aattcccgcc gtaaccgaat tgctgtttcg gtttcacaac ctgcaaattc agcgatttca
     5581 cggttagtcc agtgataatt ggggtaacgt tgatgtaaat agtggatgct gcttattacc
     5641 cgctcttgcg ttttttgata ggacaccatc gataaacgat gttctgcatc ttgtaattct
     5701 gtagagagct gttttaatag ggagataatt aagtcagaat tgtttgccca aaactccata
     5761 aaatttaatg gggtaattcg tatcagttct gccggctgca aaactcgggc tgaacaatgg
     5821 taagtgctgt taccaaaaaa ggtccgaaaa ccaaagtaat cacaggcttt ataaaccctt
     5881 actaagctct ctttaccatt ttccagcata tgatacagcc ctatcaagcc actctttaaa
     5941 aaataaaatt ctctggcgtg ataaccctga gaataaatga cgactccttt ttctagatca
     6001 gacattacac ttaattggca agacatcaat tgttcggggg ttggcatatt gttcattgat
     6061 tatccttatt attttatttt tgccatatat gattgcgatc ataatccttt atttagaaaa
     6121 ttttgcatac ttatcgcact ttaggagatg gattatgaca atggccgtga taattatttt
     6181 gatcatttgt ggtgttgtag tcaatatcac ttctgcacta tttgggattg gcggcggtgt
     6241 tttaatgatg ccgattttac attcactgtt tcctgaactg cctctccaag tgatttccgc
     6301 ctgctctctt accattgtga ttggttcagc cactatcaat ttatgcttat tccaccatca
     6361 acagataaaa atcaatcgaa aaaatgtgtt gatttggtca cttgcgatga tgttaggcgt
     6421 acaaattggg tttgaactca gttttctttt ctctgataac agcattatcg ctatctttat
     6481 tctaaccctg ctgacacttt catttaaaac cctatttcac aaaccaagag ttaaacctaa
     6541 accaaaagaa gcagtatcta atgccacaat gtgcagttta ggcggtttaa ttgcaggtat
     6601 taccggcatt ggcggcggtt cgattatggc tccgattgtc acgcaaatac gctcggtttc
     6661 accgaaacag gttgcagttt atactaacta tatgatggtg attggcggaa tcggcaattt
     6721 atatggctac ttatcccgcc cttttgtgtt gaattcaacc ttagcaactt ggcaaatcgg
     6781 ctatgtgaat tttgcgattg tcggcattgt ggtaatgagt tcgcttttta cggtctattt
     6841 ttcaatgaaa ttgcgcaata ttttaagccc cgaattaacc acgaagctac taggtatgat
     6901 cttatttggc attgcttgtt atacggggtt cttgcaatac ttctttattt agcaaaaagc
     6961 gtagtgttat tgcttatgcg gtaatttttc ccaagtgact tcattacgca aatacaccgg
     7021 ttctatttca agggcagata gagtattccc ttttaggatt tcagtttcag caatcgaaag
     7081 catatatcga ctggaaggca aagtgatatc gctaataaca agcggtagat tttgctcaga
     7141 aaattgcaaa tatgccgccc aacctgtgcc aaccaccaca gtctcttcac ttacttgaaa
     7201 ttggcctatt gcagcttcgg gcgaacagac ttgttcagcc actacttcat tccattctgc
     7261 acccttgcgt tcaaattgag caaagtaaac ttcattcatt cgggcatcaa ttaaggcaat
     7321 tacctttgtt gcccctaatt tttgatatgc ctcttctgcc attgctttta agttggaaac
     7381 agcgaccacc gacaaattcg cccccatcgc taacccttga gccacactta cacctactct
     7441 cacgccggta aaactgcccg gaccacgtcc gaatactaaa taatttactt ctttgagttc
     7501 gatattggct tgatgaagta attcatcgac catcggcaaa attcgctggg tatgggaacg
     7561 agggctgatt tcttctaaga aagtgatatt tccgttatgt tgtaacgcta cagagcaagc
     7621 ctctgtggca gtatctaaag caagaatagt agatttcatc atatttttag tttgaacaaa
     7681 ttgaatttgc tttaaggtta aacaaagaaa gggcgaattg tattcgccct caatgaaaag
     7741 attattttgc aaattgtcgg cgtttttcga ccgcttgtgc cagtgcaaat aacgcttttt
     7801 cgctatcttc ccaaccaata caaccgtctg taatactttg tccgtaaact aacgcctcta
     7861 aacctttgcc ttcaattaag tcttggcgac cttctaccaa gtggctttca atcatcacac
     7921 ctgaaataaa gtctgatcca cctgcaattt ggttgcacac atcagcacaa acgtccattt
     7981 ggcgtttgaa ctgcttctgg ctgttagcgt ggctgaaatc gatcatcacg tgtggacgtc
     8041 cgccggattt ctcaatcgca gcacaagccg ctgcaacgga gtcagcatcg tagttggttg
     8101 cgctatcgcc accacgcaaa ataatgtgac agtcaggatt tcctgctgtt gaaacaatcg
     8161 cagaatgccc gaatttagtg accgataaga aatggtgtgg cgattttgcg gaagaaattg
     8221 catctaatgc aattttcaca ctaccattcg tgccgttttt aaaacctacc gcacaggata
     8281 aaccagaggc taattcacgg tggacttgag attcagtcgt tctcgcccca attgctcccc
     8341 agctcataaa gtcagccaca tattgtggtg taatcatatc caaaaactcg ccggcagtcg
     8401 gcacgcttaa atcattaata tcagataata ctttacgggc aatgcgtaaa ccatcgttta
     8461 aggcaaaggt ttcgttcaaa taagggtcgt taattaagcc tttccaacca acggttgtac
     8521 ggggtttttc aaaatagaca cgcatcacca cttctaagtt ttggttaatt ttcggatcag
     8581 cacgcattgc tttaattttt tgtgcatatt ctaatgccgc tttcgggtcg tgaatggagc
     8641 aaggtccaat caccactaat aagcgatcat ccgcaccgtg taaaattttg tggattgatt
     8701 gacgggtttt agcaacggtt tccgctgcaa catcacttgc cggataggct tccagtaatg
     8761 caataggtgg tagtaattct tcaatactgg taattctgac atcgtcattt ttgatataag
     8821 acattgtgtt cactctctaa ataaaatgaa a
//
LOCUS       DANLUT010000103         8819 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLUT010000103 DANLUT010000000
VERSION     DANLUT010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8819
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..438
                     /locus_tag="PXB38_001764"
     CDS             <1..438
                     /locus_tag="PXB38_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354058.1"
                     /translation="VNRCKPEIRETLIKYKKECYQALHDYWFNGKAERSQIAPLVEPK
                     ITMELTKKEWLRFASMWFALYNSLEVLATLEKPLRTIGSPFGATAYTHATEYQTTLGV
                     MKRILEPMLADFEVDPFEEAHYHKALTTLRQYQPKGLGGLVRI"
     gene            693..869
                     /locus_tag="PXB38_001765"
     CDS             693..869
                     /locus_tag="PXB38_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354059.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            957..1331
                     /locus_tag="PXB38_001766"
     CDS             957..1331
                     /locus_tag="PXB38_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354060.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETAPFLRNRIEKMAELGKVWAALAKEWRTLEALYNEEEDQIRCPKTYAKL
                     REILEANEENVVRIGNLSISIG"
     gene            1339..1506
                     /locus_tag="PXB38_001767"
     CDS             1339..1506
                     /locus_tag="PXB38_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5354061.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
     gene            1587..1910
                     /locus_tag="PXB38_001768"
     CDS             1587..1910
                     /locus_tag="PXB38_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354062.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            1814..2869
                     /locus_tag="PXB38_001769"
     CDS             1814..2869
                     /locus_tag="PXB38_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5354063.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAIKLLESIRHRHSKYVFVGKNGNPLQDINRKAFNLATKKCLLS
                     DFHFHDLRHTWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLEHANKVEIY
                     GTFTEHSQNEPRLKLVA"
     gene            complement(2901..2977)
                     /locus_tag="PXB38_001770"
     tRNA            complement(2901..2977)
                     /locus_tag="PXB38_001770"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2941..2943),aa:Arg,seq:tct)
     gene            complement(3002..3078)
                     /locus_tag="PXB38_001771"
     tRNA            complement(3002..3078)
                     /locus_tag="PXB38_001771"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3042..3044),aa:Pro,seq:tgg)
     gene            3248..4108
                     /gene="folD"
                     /locus_tag="PXB38_001772"
     CDS             3248..4108
                     /gene="folD"
                     /locus_tag="PXB38_001772"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL5354064.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYVEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIESKSYDLPEETTEAELLALIEQLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QAYENHLQVV"
     gene            4223..5674
                     /gene="thiI"
                     /locus_tag="PXB38_001773"
     CDS             4223..5674
                     /gene="thiI"
                     /locus_tag="PXB38_001773"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL5354065.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVEEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(5719..6426)
                     /locus_tag="PXB38_001774"
     CDS             complement(5719..6426)
                     /locus_tag="PXB38_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL5354066.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(6494..7468)
                     /gene="pfkA"
                     /locus_tag="PXB38_001775"
     CDS             complement(6494..7468)
                     /gene="pfkA"
                     /locus_tag="PXB38_001775"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL5354067.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(7575..8771)
                     /locus_tag="PXB38_001776"
     CDS             complement(7575..8771)
                     /locus_tag="PXB38_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL5354068.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVDLNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         2742 a         1718 c         1936 g         2423 t
ORIGIN      
        1 gttaatcgtt gcaaacccga aatcagagaa acactcatca aatacaaaaa agagtgctat
       61 caagccttac acgattactg gttcaacggc aaagcagaac gttcacaaat cgccccactt
      121 gtcgaaccta aaatcacaat ggagctaacc aaaaaagaat ggctacgttt cgcttcaatg
      181 tggttcgctc tctataacag ccttgaagtg cttgccacat tagaaaaacc gttgcgtact
      241 atcggttcgc cgtttggggc aaccgcctac actcacgcca ccgagtatca aaccacgctt
      301 ggcgtaatga agcggatact tgaaccgatg ttagccgact tcgaggtcga tccgtttgaa
      361 gaggctcact accacaaagc cctaactacc ttaaggcaat accagccgaa aggcttaggc
      421 ggcttagtcc gaatttaatt tgcaaaaaaa tcacacaatc cgaccgcttg taaaacatca
      481 agcggcggat ttccacaccc aaattttgag gattagacga tgaaatacgc aaaaatcata
      541 ctctttttaa ccgcctttgc agttgctgct gaccatttag agttacgcaa cgactgcgat
      601 ggcaaaccat gcactatcgc acagcgataa tgcctccctg aaccctgccc gtgcagggtt
      661 tatttttatc cactctcaat aggagaaacg aaatgacaga agaagacaaa gaatatcttc
      721 aaactaaaat tgaaaacgaa ggttttgaat acgctttcgt cagttatagt gactttgaag
      781 aagtccaaga tgaaaaattc cacgggcttc gcaaggctta tttaaaagct cgaagtgagt
      841 tagcggaata tattgatatt gaagattaac cactgatgaa ctgttcattg aacaaatgaa
      901 cacttgacaa ccgcttgtag aacttgttcc gcaagcggtt attttttgga ggaaaaatgc
      961 acatagaaga caaaatcgct tggtggcttg ccaatggaga gacaggggta agcagtaaaa
     1021 caatggcttt ttaccttggt tacggaataa gaccaaaaat agaaggctac ccacacgatg
     1081 tatcggattt caggcgttgc tttctgttgt tggagacagc cccttttttg cgaaatagga
     1141 ttgaaaaaat ggctgaactt gggaaagttt gggctgcact tgcaaaagaa tggcgcacat
     1201 tagaggctct ctacaacgaa gaggaagatc aaataagatg ccccaaaacc tatgctaagt
     1261 tgagagaaat cctagaagcc aacgaagaaa atgttgtccg tattgggaat ttgagtattt
     1321 cgataggata ggtaaaaaat gcaattcacc tacggctcaa tttgtagcgg tatcgaagct
     1381 acaagtatag cgtggcacgg tttaggtaag cctttgtggt tctctgaaat tgagccattc
     1441 ccctgtgcgg tattagctca ccgtttcccc aatgtgccaa atggaaacgg tatggctgtg
     1501 ccttgatgca gtggataagg caaagactta acgattattt agtacaatcc ctcgtttaga
     1561 gggatttatt ttggagaaag taatgaatgg aacatcttac tattaatcaa gtggcaaaag
     1621 aattaaattg ccatccaaat acagtccgcc aacatttggc ggattgggga ttttttaaaa
     1681 tggtaggctc ggaagtttgg cggatcaacc gagaagattt ggaaagagca aaaaagagag
     1741 ccggtattga cccaataaga aaacgatctg ataatgaccg agggttatct ctgtcggtcg
     1801 aggagaatga aaaatgtcga tctacagacg aaaagcaaac ggtccgtggt gggttgatat
     1861 cacaacccca aacggcaaga gaattaagag aagcactcgc acgcttgtaa aacgtgaagc
     1921 tcagcagtat cacgataaac tcaagcaaga aatgtgggca gaggataaac tcgaggaaaa
     1981 gagaaaatat atctttgaag atgctttgct ccattacgtt cgtgcggccg aagaattaaa
     2041 agataaagcc acaaaaaagc gacatgctga atactggtta tccaaatttg ccggtcgtga
     2101 actcagctct ttaacagctc aggagattat cctaaatatc ccgaaaaaga atgcaaatac
     2161 gaaaaagcct ctatctcata gtacgcaaaa taagtatgtg aaatctttat cgagagtatt
     2221 aaatatcgct cataaacttg gtatgttgga tgcagtccca cacataccga aaaagaaaga
     2281 gccgccaatt cgtgtacgct ggatcaccaa agaacaagca aaacagctaa tagataaatt
     2341 aagttcagac tggatgaaat ctatctgtaa gtttgctttg atgactggag ccagacggac
     2401 agaaattttg acaatgactt gggataagat agatcttgta agaaaggtag caatcgtgac
     2461 taatgatgtc gctaaatcag gtaaggcacg atcgctatta ctgaatcaag aggcaattaa
     2521 gctgcttgaa tctatccgcc accgccattc taaatatgta tttgttggca agaacggtaa
     2581 tcctttacag gatattaacc gaaaagcatt taatttggct acaaaaaaat gcttactgtc
     2641 tgatttccac tttcacgacc tccgccacac ttgggcgagt tggcacgttc aagcaggaac
     2701 gcctcttttt acattaaaag aattaggcgg ttgggaaacc ttggaaatgg ttaaaaaata
     2761 cgcccattta aatgcagatc acctattgga acacgcaaac aaggttgaaa tttacggtac
     2821 atttacggaa cattcgcaaa atgaaccaag attaaaactt gttgcgtagc atataagtga
     2881 ttgaatttaa aggaattaaa tggcacgccc taaaggattc gaacctttga cccacgcctt
     2941 agaagggcgt tgctctatcc agctgagcta agggcgcaga tgaagataat ataaaaagaa
     3001 gtggtcggcg agataggatt tgaacctacg acccactggt cccaaaccag ttgcgctacc
     3061 aagctgcgct actcgccgac ataagatgtt gttgattata gatttctttg cacaacagtc
     3121 aatctttttt tgtgaatgtc ggcttaaatg attgaagttt atccgttatt caaaattagc
     3181 ttatcaaaaa ggctattttt tgagaaaatg acgaatgttt tgccaagtga tatttcggga
     3241 ggtagtaatg actgcacaaa ttatttctgg gagtgaggtt tcttcacaaa ttaaaaaaaa
     3301 agtgagtgag aaaatcgctc attatgttga acagggtaaa cgtaaccccg gtcttgcggt
     3361 cattttagtg gggaatgacc cagcctctca agtgtatgtg gggagtaaac gcaaaagttg
     3421 tgctgaaatt gggattgagt cgaaatctta tgatttacct gaagaaacta cagaggctga
     3481 attattagct ctgattgaac agctgaatca agatgattcg gtcgatggga ttttagttca
     3541 attaccgtta cctaaacaaa ttgattcgac taaagtgatt gaagccatct taccacataa
     3601 agatgttgat ggatttcatc cttataatgt tgggcgttta tctcagcgta ttcccacttt
     3661 acgcccttgc acgccatacg gtgtgatgaa gttgcttgaa acaacagggg tagatttata
     3721 cggtcaacac gcagtgattg taggtgcgtc taatattgtt ggtcgcccga tggcgttaga
     3781 attgttgctt ggtggttgta cagtcactgt cactcatcgc tttaccaaag atttagagca
     3841 tcacgttcgt caagcagata ttttagttgt agcagtcggc aagcctgaat ttattcccgg
     3901 ggagtgggtt aaagacggtg ctatcgtgat tgatgtaggg attaaccgtg gagcagacgg
     3961 caaactaaaa ggtgatgtag agtattcagt tgcctcgcaa aaagcggcat ttattacccc
     4021 tgttcccggt ggtgtaggcc cgatgacggt ggcaatgtta atgcaaaata ccttgcaggc
     4081 gtatgaaaac catttacaag tggtctaatt tgacagatat tttgcaaatc ctcggcattg
     4141 gtcgaggatt tctttttcta ggctttttca gcagaaaagg ctaaaatact cgccattttt
     4201 gtcacactat tctgatttaa atatgaaatt tatcatcaaa cttttccctg aaattatgat
     4261 taaaagcgat tctgttcgga aacgctttat caaaatttta acctcaaata ttcgtaacgt
     4321 attattaaaa gagactgaaa atgtgtctgt ggttcgccat tgggacttta ttgaagttcg
     4381 ggcgaaagtg gaggaagaaa cggcattagt gctggattta cttaaacgca cgccgggtat
     4441 tcaccatatt ttagaagtgg aggaaacccc ttttacggat atgcacgata tttttgagca
     4501 gacttatgcc gcagtgaaag ctgaactaga aggcaaaacg tttagcgtgc gggttcgccg
     4561 taaaggaaag cacgatttcc gttctcttga tgtagagcgt tatgtcggtg gtgggctgaa
     4621 tcagcggatt gaaacggcga aagtgaaatt aaccaaccca gatgttacgg tcagaattga
     4681 tattgaacat gataaaatgt tgctgattaa agctcgccac gaagggttag gcgggtatcc
     4741 aatcggcaca caagaagatg tgttgtcatt gatttcgggt ggttttgatt cgggtgtatc
     4801 gagctatatg ctgattcgca gaggttctcg tgtgcattac tgttttttca atttaggtgg
     4861 tgccgcacac gaaattggcg tgaaacagat ggcatatcat atttggagcc gttatagtac
     4921 ctcgcacaaa gtccgtttta tcgccattaa ttttgaaaat gtagtgggtg agattttaga
     4981 aaaagttgat aacggacaaa tgggcgtggt attaaaacgt atgatggtgc gagcggcaag
     5041 ccgtattgcc gagcgttttg atattcaagc gattgtgacc ggtgaggcgt tggggcaggt
     5101 ctctagccaa acactgacta atttacgttt aattgataag gcatcagata cgctggtatt
     5161 acgtccgctc atcactcacg ataaagagca gattattgca atggcaaaag cgataggcac
     5221 tgacgatatt gctaaatcaa tgccggagtt ctgtggagta atttctaaaa atccgacggt
     5281 taaggcaatc gaaactaaaa ttttggaaga agaaggcaac tttaattttg aggtactaga
     5341 acaagcggtt caaacggcga gttatttaga tattcgtgag atcgctcagc aaaccgaaaa
     5401 agaggttgtt tcggttgaaa ccacaacaga attgagtaaa aacgatgttg tgctagatat
     5461 tcgcagcccg gaagaggttg atgaaaaacc attccgttta gacggggttg aagtaaaaga
     5521 actcccgttt tataaacttt ccagccagtt tagtacgctt gaccaaagca aaacctactt
     5581 gctctattgc caacgtgggg taatgagtaa actgcaggct ctttatttga aagagaatgg
     5641 ctacagcaat gtaaaagtgt ttcgagtgaa ataatgcctc tttgattgca ccttaatgat
     5701 tgattaaggt gcaatttttt accaaataag gcttgctaaa aagagtaaga tcacaggaaa
     5761 ttcaagcatt ccaacttgtt taacattcca gccaaagctt ggcacaataa tggctcgggc
     5821 agttgcaatt aaataagcaa aaaagaccgc ttgtagagag cagagtatgt aaagcattgc
     5881 taaaaccaaa tgtattgcaa tactgatttc catataaatt gggtttcttc gctctcgcac
     5941 catactcttt atatagaaag tcgtagcaat aaaaaatagg gtagggtgga gcagaatctc
     6001 aaactgatat tgtttcgtta ccagataata agctgccatt cccattatgc caaaggttag
     6061 aatgccggca atatcattcc ataaattgcg ttcatctttt tgtttggcgt agtgaacttg
     6121 cactaaccca agcggtagaa ttatcggtaa aaattgcaaa atcgaaggct gagcgtagat
     6181 caaaggtaat gcaaatagaa tgcttaagcc aaagtagatt ttcgcccatt ttttattgcg
     6241 ttcagttggc tttttactga aaagtgagag aaaagggtag gaaaagaagt agagaaacag
     6301 ccacgacagc ccaaagaaaa tatgcaaagt gctaaaacca ctttcaataa cggcgtagag
     6361 aaacggcaac attgccattg ctaatgcacc gtgttggttg gatataacgg gtttttcttt
     6421 gaacatttaa tttccctctt aatgtggcaa ataaaaaggc gactaaacag ccgcctttaa
     6481 attgtaagaa aagttagaat aattttctag aggcttcaaa taattcttct ttgaacggac
     6541 gacgcatatt attgatcgca tcaataatat cgtggtgaac caactgctcg ttttgaatac
     6601 cgacacagtg accgccaaag ccttgcagta ataattccac cgcatagacg cccatacggg
     6661 aggccaaaat acggtcgaag gcacaaggcg aaccaccacg ttgaatatga cctaatacgg
     6721 ttgcacgggt ttcattgccg aaacgtgctt caatttcttt cgctaatgcg tgaacatcgg
     6781 tcatcaattc tgtaattgca ataattgaat ggcgtttacc tttgtggaaa ccttcttcaa
     6841 tgcttcgcat taatgcatct ttatctaagc ctttttccgg tacgatcaca tattcgcaac
     6901 caccggcgag ggcagcactt agggttaaat caccacagtg gcgacccata atttccacaa
     6961 tcgaaatacg ttggtgtgaa cttgaagtat cacgcaggcg gtcaatcgca tctaatgcgg
     7021 tttcaagggc agtttgatag ccgatggtgt aatccgttcc cacaatatcg ttatcaatcg
     7081 tacccggaat accgatacaa gggtaaccaa attcttcggt taataattta gcccccatat
     7141 aagaaccgtc gccaccaata accactaatg catcaatgct gtattttttt aaggtttcga
     7201 cacaatgttt gcgaacttct ggtcttttaa aatcagggaa gcgggcagaa cctaagaatg
     7261 taccgcctcg gttgatggtt tcagacacgg aacggcggtc aagtgggatc actttatcgt
     7321 ggtaaagccc atagtagccg tcttgaatac cacaaacctc taaaccttca ttaagtgcgg
     7381 tacgaaccac accacggatt gccgcgttca ttcctggtgc atcaccacca ctggttaata
     7441 ctgcaatttt tttgattttt ttactcattt aaaaacacct tgttgataaa ttaaagttaa
     7501 attggaaact ggtgcaaggt tacaatattc agccttttcg ttctactaaa aaatacgtat
     7561 ttttttgatt tagcttagct ttcttgcaaa atttcaaggg taaaatctag agcgttgaaa
     7621 aaatgctcaa catcttgttg attattgtaa tgggcaagtg aaagtcgaac tgttccgacc
     7681 tcttctaaat ggcgtaaata aggcttggca caatgctccc cttggcggat cgcaatttta
     7741 ctttgggtta agaaagcggc aatatcggca gggtgctgat ttttcaccac aaagctaata
     7801 gtcggtgtat tttgttgccc gataatttgc aaattttgat aagaatttaa ccgcttgcag
     7861 gtgtattcag ccaagtcata aagctgatga ttaagatcga caaaatccca tttttcgagc
     7921 caagctagca cttgcccaaa gccgataatg ccggcgatat tcggcgtgcc agcttccaag
     7981 cgataaggta actctgccac agttaattca ctttccgtaa tgtttttcag cattttgccg
     8041 ccaaatacaa gcggttgaat ttgctccaaa ctttgcaatt tgccggtaag cacgcccaca
     8101 ccgtttggac catacatttt atgggcggaa aaagcgtaga aatctgcatc taatttctga
     8161 acgtccactt gctctgagca aactgcttga gcaatatcta acacaatttt agcagagcaa
     8221 gattggcgga taagcgggat tatttgttcc gctggctggc gaactcctgt tacgttagaa
     8281 actaaattaa aggcaacaat tttggttttt tccgataacg catttttaag ggtttcaagc
     8341 tcaatttcat acttatcatt aagtggcaac accacgagtt tcgcccttgt acgctgtgcc
     8401 aactgctgcc aaggaataaa attagcgtga tgttccgcca ctgaaattac aatttcatcg
     8461 cctgctgcaa tttgatgctc caagccataa gccacggtgt taatactttg ggttgtaccg
     8521 cttgtccaaa tcaccgcttc acgagtttcc acattgaaac gttttgcgac taaatctcga
     8581 gctaattcat attgttcggt ttgtggcaaa tcgtactgac tgcgatgcac cgaccccgca
     8641 gaagcgtaaa actcacttgt tgcttcaatg agtacatcag gtttcagcgt tgtagcggca
     8701 gaatctaaat acgtccatcc gtcagatttt tcaaaaaaag ggaaatgggt gcgaaattgg
     8761 gtgttaagca taagttaatt cctaagagtt gtggaaaatt gagttaccaa gaaaatacc
//
LOCUS       DANLUT010000104         8808 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLUT010000104 DANLUT010000000
VERSION     DANLUT010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8808
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            43..1356
                     /gene="pilQ"
                     /locus_tag="PXB38_001777"
     CDS             43..1356
                     /gene="pilQ"
                     /locus_tag="PXB38_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL5354069.1"
                     /translation="MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNM
                     VLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPI
                     MNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
                     SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGH
                     YKFGGRLEGNGLNDVTNNLNVNFPITGGASAVLQVASINSRVLDLELSALEQENSVEI
                     IASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQIL
                     LDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPI
                     LGSIPFIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNHKKSK"
     gene            1437..1850
                     /gene="nusB"
                     /locus_tag="PXB38_001778"
     CDS             1437..1850
                     /gene="nusB"
                     /locus_tag="PXB38_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL5354070.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1913..2893
                     /gene="thiL"
                     /locus_tag="PXB38_001779"
     CDS             1913..2893
                     /gene="thiL"
                     /locus_tag="PXB38_001779"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL5354071.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2898..3371
                     /locus_tag="PXB38_001780"
     CDS             2898..3371
                     /locus_tag="PXB38_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL5354072.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3378..4001
                     /locus_tag="PXB38_001781"
     CDS             3378..4001
                     /locus_tag="PXB38_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL5354073.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4113..4718
                     /gene="ruvA"
                     /locus_tag="PXB38_001782"
     CDS             4113..4718
                     /gene="ruvA"
                     /locus_tag="PXB38_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL5354074.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKRMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4855..5859
                     /gene="ruvB"
                     /locus_tag="PXB38_001783"
     CDS             4855..5859
                     /gene="ruvB"
                     /locus_tag="PXB38_001783"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL5354075.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVRDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5958..6641)
                     /gene="artM"
                     /locus_tag="PXB38_001784"
     CDS             complement(5958..6641)
                     /gene="artM"
                     /locus_tag="PXB38_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL5354076.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6641..7312)
                     /gene="artQ"
                     /locus_tag="PXB38_001785"
     CDS             complement(6641..7312)
                     /gene="artQ"
                     /locus_tag="PXB38_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL5354077.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7312..8037)
                     /locus_tag="PXB38_001786"
     CDS             complement(7312..8037)
                     /locus_tag="PXB38_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL5354078.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEVRQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8065..8799)
                     /gene="artP"
                     /locus_tag="PXB38_001787"
     CDS             complement(8065..8799)
                     /gene="artP"
                     /locus_tag="PXB38_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL5354079.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
BASE COUNT         2649 a         1875 c         1705 g         2579 t
ORIGIN      
        1 taatatccct tatgaaatta acatcaaatt atagaggttg atatgtggcg aatttttata
       61 tatttcttat gcggtttttc attagcctat gcgaatacca tttccatagt tttaaaaaat
      121 gctccaactt cgcttatttt tacttattta gcggaagaaa ccggtaaaaa tatggtgctt
      181 gatgataata ttgaaaccaa atcaacacta cgattagaaa ataaatcggt tgacgagatt
      241 tttaaaacgc ttggcaaagt caataaatta tccttaacgc aagaagatga tattgtttat
      301 attcacaaaa aagaggaaaa agcggctgac ttaacgcctc tgccaataat gaatttgcaa
      361 aataatgggc aaaatacacc gcttgtcacc gcccctaagt taatcacaaa aaccttgaaa
      421 ctacattatg caaaggcttc agaggtgatt gagtcgttaa ccaaaggcag cggaacgttt
      481 ttatcggaaa acggttatat tcactttgat gaaagaagca atagcctgat tgtgaaagac
      541 agtgcaaaat cgcttaaaaa tatcgagaat ttagtaaaac agctcgacca acccaccgag
      601 caaattgcga ttgaggctag aattgtcact atcagtagcg agcatttgca agagcttggc
      661 gttcgctggg gaattttttc tcgtggggct gggcactata aatttggcgg acggctggaa
      721 ggcaatggac tcaacgatgt caccaataac ttaaatgtaa attttccgat tactggtgga
      781 gcatctgccg tattacaggt tgcgtccatt aatagcagag tgcttgattt agaattaagt
      841 gcattagaac aagaaaatag tgtggaaatt attgccagcc cacgcctgtt aaccaccaat
      901 aaaaagccgg caagtatcaa gcaaggcacg gaaattcctt atgtgatgta caacaccaaa
      961 tcggaagcca ccgatgtcga atttaaagaa gcggtattag ggcttgaagt cgttccacac
     1021 ctttcaaccc aaaatcaaat tctactcgat ctgatcgtta cccaaaattc gccaaattcc
     1081 caatccggca gtagtggctt aattacgatt gataaacaag agctaaatac gcaagtattt
     1141 gccaaacacg gcgaaaccat tgtacttggt ggtatttttc aacatttaac ccaaaaaggc
     1201 gaagataaag tgccgatttt aggctcaatt cccttcatca agcggttatt tagtcaaact
     1261 cgagataaaa tcagcaaaag agagctagtc atttttgtga cgccttatat ccttcaatct
     1321 aatgaaaaga gcagcaacca caaaaaatca aaatagcaca tcataaacgc aagcaaaaat
     1381 aggggaagtg tgatagaatc agccgtcatt ttttgagtta aagatttaga ggttttatga
     1441 aaatttcccc acgtcgccgt gcaagagaat gtgcggtgca agccatttat tcttggtata
     1501 tttcccaaaa cacggttgaa gaagtggaat tggcgtttgt gaccgatcaa gatatgaaag
     1561 gcgttgatat gccttatttc cgtaaacttt tccgtggcgt tgtggataat gtagaagcca
     1621 ttgatgaagc attacgccct tatttagatc gtaaagagtc agatgttgat cctattgaac
     1681 gttctatttt gcgtttatca acttacgaat taaaatttga acacgatgtg cctttccgtg
     1741 tagtcatcaa tgaagggatt gaagtcgcta aagtgttcgg ctctgatgac agccacaaat
     1801 acattaacgg cattttagat aaattagccc cagcattagg cagaaaataa taagattccc
     1861 caatttatac ataaattggg gattttgatt ataacgctca aggagatttt ttatgggtga
     1921 atttgatatt atcgaacgct attttaatgc ttctcaacgc ccacctcgca aagatgtttt
     1981 actttctatc ggcgatgact gtgcgctcac atcactcaaa ccaaatcagc aacttgcgat
     2041 cacaaccgat acccttgttt gcggcactca ttttctaccg actatttcac ctgccgatct
     2101 cgcttataaa agtgtggcgt ccaatttaag cgatcttgcc gcaatgggtg cagaacctgc
     2161 atggatctct ttagccttaa ccttacctga aattaatcac gattggctag ctgaatttag
     2221 tgaacatttc tttgagattc ttgatcacta taatgttgat ttgattggag gggatactac
     2281 ttgtggacca ctatctttga caatcacagc tcaagggatt gtgccacaag atagaggctt
     2341 attccgccat aatgctaaag taggcgattg gatctatgtt tccggcacac tcggtgacag
     2401 tgcaggtggt ttgcaacttc tgctaaatca gcaaagcgag caagtgaatt ggaataaaga
     2461 gcaaagctac ctgattcaac gccatttacg cccaacacct cgagttttac ttggcttgac
     2521 tatcgcctct attgctaatg cagcgattga tatttcagat ggtctattgt ctgatttaag
     2581 ccatatttta aagcgcagtg actgtggtgc agtattaaac cttgagaatt tccccttgtc
     2641 tgacgtctta cttagttgtt attctcgaac agaggcagaa tattttgcct taaacggtgg
     2701 cgaagattac gaactctgct ttaccgtgcc aaatgacaac aaagccaaat tagacaaagc
     2761 attagccaat atcggagtaa cttatacatg tattgggcaa attcgttcgg ctaaagaagg
     2821 tttaacccta ttacgtcata atcagcctgt caccttgccc tcacaacgag gctacgatca
     2881 ttttaaaaaa taacgcaatg aaaccaatta atcttaaaaa tccgattcat ttttttgcct
     2941 ttggctttgg ttcaggctta ttaaagcctg ctcccggcac ttggggtagc ctcgccgggc
     3001 taattgtagc aatagccttg tggtctatca cacaatccgc cctgtttttc ggcttactca
     3061 ccctagtttc ttttattgcc ggttgtgtta tttgcaccaa agccagccaa gatctagaag
     3121 tacacgatga cgggcgaatt gtttgggacg aaatagttgc catctttttg atgttcacct
     3181 gtttgcctga atacaatctt cttggctacc tgctcgcctt tatcagcttt cgcatttttg
     3241 atattttgaa gccttttcca atccgctatt ttgatgaaaa attagaaagc ggtttaggca
     3301 ttatgtttga tgatattctc gcagccattt ttgccctgat ttcacttcat cttttatatt
     3361 atttcattta aaaatttatg ctcactattt tatttattca ttttgccggg cttatcagcc
     3421 ccggccccga tttcttctat gtcgtcagac aatccgccag ccactcagtt aaaagtgggg
     3481 tacttgccgc aaccggaatc tcaatcggca ttattttttg ggcagccttt gcgatttttg
     3541 gtttagcgtg gctcagtaat agtattggct cgctgtttca atatgccatt atgattatcg
     3601 gtggctgtta cctggtttat attggctctc aaatggtacg ggtaaccgaa aatatcattt
     3661 ttgttgaaaa taaagctcaa ctcacgccgc taaacccttg gcaggaaatt aaaaaaggct
     3721 tattaatcaa tatctttaat gccaaagctg gcgtttactt taccagcgtc atttcagcct
     3781 atgtagataa tttaagcaat accctacaaa tgttcgaact acttctactc tttgtggtaa
     3841 gtacctttat ttatttctgt gtggtggcac tactcttttc tcgccgaccg gtcagactgt
     3901 tctatgccaa atatagtcgc tatattgaca atatctcagg cgtaattttc atcttattcg
     3961 gctcgatgct gatttatgaa ggattcagcc actttatcta atcacaagcg gtctgatttc
     4021 actaaaaatt tgcaaattcc gctatcaata aatagtgtta ttttatacag tttctgctat
     4081 gctactgcca attttaactc tgagagaaca aaatgattgg acgattacac ggcaaaatta
     4141 ttgaaaagca accgcctgaa attttattag acgtgcaagg ggtaggctat gaactactgc
     4201 tcccgatgac cagtttctac agcctgccac aaattggcga agaggcgact attttcaccc
     4261 atttagtggt gcgagaagat gctcacttgc tattcggctt tgcccaaaaa caagatagaa
     4321 ctctattccg tgaattaatt aaaaccaacg gtgtcgggcc gaagctcgcg ttggcaattc
     4381 tatcagcaat gtcggtgtcg caatttgcca ccgcgattga aaatgaagag ctggcaaaat
     4441 taaccaaaat tccgggaatc ggtcggaaaa ccgcagaacg cttattggtg gaactcaaag
     4501 gcaaatttaa aagaatggca cagagtgatt tctttgtgga agtatcgcac gagcaaattg
     4561 tggcaagtaa tacgccagac ccggcaaatg aagcccttga tgccttaata gccctaggct
     4621 acaaacctgc cgatgcggaa aaaatgatta agaaagtgaa taaatccggt gcaacgagcg
     4681 aacagcttat tcgtgaggcg ttaaaaaatt cattatgata ttgatagtat agggcgaaag
     4741 atatttcgcc cctacaatct catttttaaa aatatatgtg taggggcaaa tcaatatttg
     4801 ccctcatgag taatataggg taataccatt ccactacaac aataatctaa atgtatgatt
     4861 gaagcagata gaatcatcag tgcctcgcct aagcgtgagg aagaagttat agaccgagca
     4921 atccgcccga aactgcttgc cgactatgtc gggcagcctt ctgtgcgtga tcaaatggag
     4981 atcttcatca aagccgctaa attgcgggaa gaggcattag atcacttgct cattttcggc
     5041 ccgcccggtt tggggaaaac tacccttgcc aacattgtgg caaacgaaat gggggtgaat
     5101 attcgcacaa cttcagggcc ggtgctggaa aaagcaggcg atttggcagc aatgctgacc
     5161 aaccttgaac cttacgatgt gctgtttatt gatgagattc accgcctttc tccagcgatt
     5221 gaagaagtgc tttatcctgc aatggaagat taccagctcg atattatgat tggggaagga
     5281 cctgctgctc gttccatcaa gctcgatcta ccgcctttta cccttgtagg ggcaaccacc
     5341 cgtgccggct cactgacctc accgttacga gatcgttttg ggattgtaca acgcttagaa
     5401 ttttactcag tggacgatct tactctgatt gtcaaacgca gcgccgattg cttaaatctc
     5461 aatttgtcgg cagacggtgc ttatgaagtg gctcgccgct cccgtggcac accccgtatt
     5521 gccaaccgct tactccgccg agttcgggat tacgccgatg tgcgtaataa tggcattatt
     5581 acctccgaca ttgccaaaca agctctggca atgctcgatg tggattcgga aggctttgat
     5641 tttatggaca ttaaactgtt gcaagcgatt gtagaacgct ttgatggcgg gccggttgga
     5701 ttagacaatc ttgcggcagc tatcggcgaa gaacgagata cgattgaaga tgtgctagag
     5761 ccttatctga ttcagcaagg ctttctacaa cgcacaccaa gaggcagaat tgctaccagc
     5821 agaacctatg cccatttagg tataacccaa atagattagt catatttcta aaggcattga
     5881 tacataaata aaaagcggat agttagtact atccgctttc atttgcaaaa aatcaataaa
     5941 atttgaccgc ttatccgcta ggctttttca gtctcaaaac gctcaaaagc taatactctg
     6001 ctttctaatt ttctgagaac gattgtcata atgccggtaa ttaccaagta aataacccct
     6061 gccataccat aaattgataa tgcgtcatac tctgtaccat aaagctggcg agcatagccc
     6121 ataatatcca taatcgtaat ggttgaagca agcgatgtgc ctttaaaaac tagcacaatc
     6181 tcattactat aagaaggtaa agcacgtttt aatgcgtaag gcactaaaat tttcagtgta
     6241 tctaaacggc tcaaaccaag ggctgcgcaa gtttcccatt gccccttcgg aatcgctttt
     6301 accgcaccgt ggaacaacaa tgtcgaatag gcagcactgt ttaacgctaa agccaacatt
     6361 gcacagaacc aagcgtcgga taataatacc caagccgcac tttctgtaat ccattcaaat
     6421 tgccccgggc cactataaat caagaaaaat tgaattaata aaggcgttcc ggtaaaaagc
     6481 gtaataaatc cgtttaccaa ccactttaac ggacgatttt ctaacgagag aataaacgta
     6541 agaatgatcg ctaaaataaa ggcaatgatg agcgccacaa aagtgagctg taggctggtg
     6601 ccaataccct gtgaaatttc aactaaataa tcccaccaca ttaagcaact cctcgctcaa
     6661 aacgggtaaa tctaccttct aatactttaa tcactcgctg gctaattaga gtaatcgcta
     6721 aataaataag tgctgctatc ccataccaag taaaaggttg atgagtatta gcattaatta
     6781 actccgattg acgcattaaa tcatctaccc caattaacga taccaatgct gtatctttta
     6841 acagcactaa ccactgattg cttaagcctg gtaaagcgtg tcgccagact tgagggagaa
     6901 taatgcgaac aaatacttgc gctcggctta accctaacgc cgtaccagat tcccactgcc
     6961 caactggaat agctttaatt gcaccacgta aagattggga agcataagca gcaaaaataa
     7021 tacccagcgc aatagcccca caccagaaag catttaactc cgcaaactca tcggtgatca
     7081 agaaaataac ttggataaga ccaaaataga tcaaaaatac cactaaaatc tccggcaacc
     7141 cacgcaataa tgtaattatt atactagttg gtttacggat acatgcaatc ttactggttt
     7201 caagtaccac aaaaaagatt gacaataaca ttccaatcaa gaggcttgcc agcgcaatcc
     7261 ctaaggtcat cagggttgcg ttgacaagta agtttaaaat atcgctagac attatttccc
     7321 agccatccaa gtattataaa tttgctcata tttaccattt gttttgatgg tagctaaagc
     7381 cgaatttaat ttttcaagca atgcagtgtt agatttattt accgcaatac catatccatt
     7441 accaaaaaag gctttatcga ctactttttc acccacgaaa tctaactctt tttcggtttt
     7501 tagccactct gccaatactg gtgtatcacc aaataccata tcaacacgtc cattttttaa
     7561 atctaacact gctgattgta ggctagcgta aggttttaaa ttatattgtt tggcattttt
     7621 gcttaagtat tgttgaaaag ttgtaccatt ttgcacgccg acattcttag ctgtttccgg
     7681 tgtaaatttc cccttcattg cgacataact tactgagttt tctaaataag cattggtaaa
     7741 ggcaacctgt ttttgacgca cttcagtaat atccatgcct gaaataattg catcaaaatt
     7801 tttaaatttt aatcccgcaa ttaagctatc gaatgattgc gttttaaatt cgcaagttgc
     7861 ttttagttct tcacataatg cttttgcaat atctacatca aagccaataa cttcaccttt
     7921 ttcatttgtt gtttcaaaag gggcgtaaga aggctccatc gcaaaagtga tagtttcttg
     7981 tgcattggca gaaagcgttg caaatgcgat agcagaagct aataataatt ttttcattgt
     8041 tgtgtccttt tctgttgtta tagattactc tgagtgagat aaatattgag caaattgctc
     8101 tgttttcggt gattcaaaac aacttgcatc accttgttca ataattgtac ctttttccat
     8161 gtacaccact ttgcttgcca ccttacgagc aacgcctact tcgtgagtca caatcacctg
     8221 agtaatgcct gtagattgca attctttaat aatatcaact acttgtgcag taatttccgg
     8281 gtcaagtgct gcggtaggtt catcaaataa taagacctgt ggctgcatca tcagtgctct
     8341 ggcaatcgcc acccgttgtt gctgaccacc tgaaagatgc agtgggaaac gctcggcaaa
     8401 ctcgctcaaa cgcaaacgtg ccaaatgtcc ttttgctctg gcaaccgctt cttctttgct
     8461 taacccaagc actttcatcg gggcttcaat taagttttgc attacggtta aatgcggcca
     8521 taaatgatac tgctggaaca ccattcccac ctcacggcgt aacaaactca ccgctttgct
     8581 gtcggtttta gcagttaaat caaattgatg atttgcaatc gccaaagtgc ctgattgcgg
     8641 tacttccatt aagtttaagg ttcgaattag ggtactttta cctgccccac tcgggccaag
     8701 caatacaaca gtatcccctt tttcaatctc taagttaatg tcaaataagg cttggtttga
     8761 gccataaaaa aaattgacat tttgaatacg aattgccatt cgttaaaa
//
LOCUS       DANLUT010000105         8777 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLUT010000105 DANLUT010000000
VERSION     DANLUT010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8777
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            141..800
                     /locus_tag="PXB38_001788"
     CDS             141..800
                     /locus_tag="PXB38_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5354080.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            complement(860..2184)
                     /locus_tag="PXB38_001789"
                     /pseudo
     CDS             complement(860..2184)
                     /locus_tag="PXB38_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
     gene            complement(2285..3037)
                     /locus_tag="PXB38_001790"
     CDS             complement(2285..3037)
                     /locus_tag="PXB38_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL5354081.1"
                     /translation="MYLAIVHFSYHNFEQDPVTAISQVLNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVNFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NVLECHALAQISDETSVLATIGRDLCQQIEQRTHIPTFYYLYRLGRDEGEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCDPCRLISNLSWELL"
     gene            complement(3037..3936)
                     /locus_tag="PXB38_001791"
     CDS             complement(3037..3936)
                     /locus_tag="PXB38_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL5354082.1"
                     /translation="MNEKYSKLVKSAANLAIIVAILLIVIKAFAWWKTGAISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSALFLLLQGF
                     HKLTNPELIAQSDIGVIVSIASIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGVVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIEQI
                     KQIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFMAENI"
     gene            complement(3945..4508)
                     /locus_tag="PXB38_001792"
     CDS             complement(3945..4508)
                     /locus_tag="PXB38_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL5354083.1"
                     /translation="MSATKKGITLVALSLAGCVSQSPQFAVPDAIRFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNLENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVAIEQNELHSSVIYPPTERFNNVMLEVTRGRNLACGYGQIQFADKREVSKAIAKKLP
                     NLTAYSQEIAKLSLELNQLGWQVQCSK"
     gene            complement(4508..5284)
                     /gene="yaaA"
                     /locus_tag="PXB38_001793"
     CDS             complement(4508..5284)
                     /gene="yaaA"
                     /locus_tag="PXB38_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL5354084.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     EVGSLMSISDKLAALNVARFAEWQLEHNQQNSKAAIFAFKGDVYTGLDAETLTKEQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGRDLYAFWGNIITEHLQQAID
                     EQGDDILINLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     MLDTQPTSIEQLKQFNYGGYWLDADSSSENELVFKREEQA"
     gene            complement(5384..5779)
                     /gene="rpsI"
                     /locus_tag="PXB38_001794"
     CDS             complement(5384..5779)
                     /gene="rpsI"
                     /locus_tag="PXB38_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL5354085.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(5796..6224)
                     /gene="rplM"
                     /locus_tag="PXB38_001795"
     CDS             complement(5796..6224)
                     /gene="rplM"
                     /locus_tag="PXB38_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL5354086.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            6523..6918
                     /locus_tag="PXB38_001796"
     CDS             6523..6918
                     /locus_tag="PXB38_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL5354087.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(7079..8650)
                     /gene="guaA"
                     /locus_tag="PXB38_001797"
     CDS             complement(7079..8650)
                     /gene="guaA"
                     /locus_tag="PXB38_001797"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL5354088.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVAIKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKVDAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
BASE COUNT         2576 a         1950 c         1746 g         2505 t
ORIGIN      
        1 attgattttt aaggtaaagc aattttaaac aagcggtcat tttttcctaa ttttttgcaa
       61 attaacaggc gtgaaattcg cattctgctc taaatcaagt tatcattaat ctacttattt
      121 cacttataaa aggaaaaacg atgtttaata ttagcaaaca gcaagtttta gacgcttttc
      181 acttccgttc ggcctgtcgc agttacgatc caaacaaaaa aatcaacaaa gaagatatgg
      241 attatatttt ggaactcggg cgtctctcac caagctctgt cggttctgaa ccgtggaaat
      301 ttttagtgct acaaaacccg gaaacccgtc agaaaatcgc cccggtttcg tggggaatta
      361 aacacccaat ggaagaaatg agccatttag tggtgatttt aaccaaaaag aatgtccgtt
      421 atgattctgt ctatatgcgt gatatgttag ccaaacgagg cttaacctat gagcagattg
      481 aagcctcgct ggtacgctat aagtcgttcc aagaagagga tatgaaattg cttagtgaac
      541 gtgaattatt cgattggagt accaagcaaa cctatattgc attaggcaat atgatgaccg
      601 gtgcggctct gattggtatt gactcttgcc cgattgaagg ttttcattac gataccgtaa
      661 accaaatttt atcggacgaa ggcttatttg acctaaacga atatggtgtg tcttgtatga
      721 taacttttgg ctatcgcaac aaagaaatta agaaaaaatc ccgcaaacct accgaagaag
      781 tgattgcgtg gattgaataa tcaccttaac ttataaaaac gggcgaatta atcgcccatt
      841 tttatatctt tagttttgac tactcggctt tcacccattt attggttaat gtgcccgcca
      901 ccattgcacc attcacgttt aaggcggtgc gagccatatc aataatcggc tcaactgaaa
      961 tgagcaagcc tactaactca atcggcagat tcaaggttga tagcaccaca atcgccgcaa
     1021 aagttgcacc accacctaca ccggcaatgc caaatgagga aattgccacc accaaaatca
     1081 aggttaaaat atagtttaag ataaacggat ccattcccac tgttggagcg accatcaccg
     1141 ccaacattgc cggataaatt cccgcacagc cattttgccc gatggttgcc ccaaaggttg
     1201 cagaaaagtt ggcaatcaca ctgttattac ctaattattg gtttgcgtct caatattcaa
     1261 cggaatggtt gccgcactgg aacgagacgt aaaagcaaaa cttaatgtcg gcaacacttt
     1321 tttgtagtaa tccaacgggt tgattttagc cacaaagagt aaaataccgt gcacaataaa
     1381 catcaaacca atcgcaatgt atgatgccac aataaagcta cctaaattta caatatcgct
     1441 ccattgagaa gttgccgcca ttttgatcat caacgcaaat acgccataag gggttaggcg
     1501 aatcacaaaa cgtactaaac gcataaccag tttatttaag gtctctacac cttgtgcgat
     1561 acgttcgccc aacgctttat cttctttgcc taagctcagt gcagcaatgc ctagcagagc
     1621 cgagaaaata accgtgttga tgatcgacgt tgggtttgca ccggttaatt ctaaaaacgg
     1681 atttttcgga atgaaagaaa gcaacattga aggcacagat aagttgctca cctgctccac
     1741 acgccctacc actttctctt gagcggcaag ctcacgggag ccggcgacta aaccctcggc
     1801 agataaatca aacagataca ctaaagcaat accaatcgct gcggcaatcg cggtggtcac
     1861 taataacact gatagcacac taaaactaat tttgcctaaa gatcctgcct cttttaagcg
     1921 ggtaattgcc gataaaatag agacaaacac caatggcatt acgatcattt gtagcaagcg
     1981 aacataaccg ttaccaatta agttaatcca atcaagagtt gcatcaacag tagctttttc
     2041 gtaaaaagtt tgcaaaaaag caccgcttgc aagccctaaa aataacccaa taaacaccgt
     2101 ttgaccgagt ttttgcgtag atttataaat tttagccaat aaaaatagta ttgccgcaaa
     2161 gacaattaag ttgaaaataa gcacagaacc tccaaagtaa aaccgcttat tataaaaatg
     2221 ccgcaagagt attacgcttg cgacattcat tcaagatgat ttattacttt ggtataacta
     2281 aaagttataa taattcccag cttagattag agatcaaacg gcaaggatca catctaaaat
     2341 ggaaaatatc atgcaacggc tcagttaatt tccattctcc gccacaacaa gggcatttgc
     2401 gttgatattc accttcatca cgccctaaac ggtagaggta ataaaaggtg ggaatgtggg
     2461 ttctctgctc aatttgctga catagatctc gaccgatcgt tgcaagaacg cttgtttcat
     2521 cgctaatttg agcaagtgcg tggcactcta gcacattgcc gttcatttgt agcagatcgc
     2581 acgcttgcca attttgctgc cattccaata tcgcttcgct aagagactga tcctgtaaag
     2641 aataaagcgg aattggggca aactgctctc catcatagag tggcgagcag gtatctaaat
     2701 gggtggtata taatatttga aacgctggcg atcggttatg actgctttct tcgccctgat
     2761 aatctcgccc gacaagctca aaacttgcaa aattcacgcc aatttcaacc gcttgttgca
     2821 acgcttcatt cacttcatcg ctattatatt gtggcaaaag gctttcttgt gtcggcacac
     2881 aaacccgagc ttgaaactca ttttggtgaa aggtaatcgg catttctctg ccaatgactt
     2941 gcccgttata taaccactga tttaagactt ggctgattgc cgtcaccgga tcttgctcaa
     3001 aattatggta gctgaaatgc acgattgcca gatacattaa atattctccg ccataaattc
     3061 ttgtttgacc accgtagtcg gctcttgatg aatgataacg tgagacattg gaaatgccgc
     3121 cagcaatttc tgctcaaggc tatcagttat ttcgtgagct accagcagcg ttaagtgatc
     3181 gtctaattcc aaatgtagtt ggataaaccg taccgcacct gcacggcggg ttagaatatc
     3241 gtgaatccct aaaatgttcg gatgttgcga agcaatctgt tttatctgtt caatttcttc
     3301 atcgggcaag gcttggtcta gcaaagtttg taccgcacac caaaacattt tcactgcatt
     3361 aaaggcaatg tagagggcaa taccaattgc aaaaaccgca tcagcataga caacaccggc
     3421 actattgagc aacattgcca ctaaaattgc tgcgttcatt aataaatcag tttggtaatg
     3481 taatgaatcc gcctcaatcg ccggactttt cgtgagcgta acgacataac gctgataaaa
     3541 gactaaaagt gcggtgatca caatggaagc aatactcaca attaccccaa tatcagattg
     3601 agcaattaat tccggattag tcagtttgtg gaagccttgt agcagcagga aaagcgccga
     3661 gccggaaata aaggcacttt gagcaagtgc cgctaaagat tccgctttgc cgtgtccgaa
     3721 ggcgtgattc tcgtctgccg gttgcaacgc aaaacgcaac accaaaatat tagtcagcga
     3781 agcaaacaga tctactaccg agtccgtcat tgctgccaag attgaaattg cgccggtttt
     3841 ccaccacgca aaggctttaa tcacaatcag taagatcgca acaataatcg ctaaatttgc
     3901 tgcacttttg actaatttgc tgtatttttc gttcatttac tacattattt actgcattgg
     3961 acttgccaac ccagttggtt taattcaaga gaaagtttgg caatttcttg gctgtaagcg
     4021 gtcaaatttg gcaatttttt tgcaattgcc ttgctaactt cccgcttatc tgcaaattga
     4081 atctgcccat aaccacaagc taaattccgc ccacgggtta cttctaacat cacattgtta
     4141 aaacgttctg tcggtgggta aatcacacta ctgtgtaatt cattttgttc gattgccact
     4201 tttgcttcaa gctccggctt tttcgcaaaa cttgcttggc ggaatgcagc tcgttgctct
     4261 aaggtttgat ttttactgtt tttatccaag aaaaataaaa tgcctttttg ccaattttcc
     4321 agatttttct cactcttttc gggcaaataa agtaaatgtt gcatttcgtc aatttggctg
     4381 tgagtaactt ttacaaaagt atcctgccca aagcgaatag catcaggcac tgcaaattgt
     4441 gggctttggc tgacacaacc tgccaatgat aacgcaacca aagttattcc ctttttggta
     4501 gccgacatta tgcctgctcc tcacgtttaa aaaccagctc gttttcacta gaactatctg
     4561 catcaagcca atagccccca tagttaaact gtttgagctg ttcgatgcta gtcggttggg
     4621 tgtctaacat aaagcggacc atcattccac gggctttttt ggcatagaag ctgatcactt
     4681 tatatttgcc gtttttctca tctaaaaaca ccggcttgat aatagtcgca tttagatttt
     4741 gtggcttaac tgcaccataa tattcatcag aggcaagatt aattaaaata tcatcgcctt
     4801 gttcatcaat ggcttgctgc aagtgttcag taataatatt accccagaac gcataaagat
     4861 ctctgccctt cggatttgcc aacttagttc ccatttctaa acgataaggc tgcattaaat
     4921 cgagcggttt taataaacca tacaagcctg aaagcatacg taaatgttgc tgagcatatt
     4981 caacctgctc tttagttagc gtttctgcat ctaaccctgt gtaaacatcg cctttaaaag
     5041 caaaaatggc ggctttagag ttttgttggt tatgctcaag ctgccattcg gcaaagcgag
     5101 cgacatttaa agcggctaat ttatcgctga ttgacatcaa acttcctact tcggctggtg
     5161 aaagctgttt acaaatatca attaattctt ggctacaagc ggtcaaattt ggttgagaaa
     5221 atgcaaaacc gtcaatattg gttttaaaat caagggtttt ggcaggggaa ataatggcta
     5281 acataaatgc ctctatcaaa tagttaatca gggcggttat tctaccacag tcataaagac
     5341 aaaaaaggca ggaaaccctg ccttcttgaa aacgaaaaga aaattaacgt tttgagtatt
     5401 gtggacgacg acgtgctttg tgtaaaccca cttttttacg ttcaacgcga cgtgcgtcac
     5461 gagtaacgaa gcctgctgca cgaagtgctg ggcgtagcgt ttcatcgtat tccattaatg
     5521 cacgagtgat accgtgacgg attgcacccg cttgaccaga aataccacca cctttaacag
     5581 tgatgtaaag gtctaattta tcagttaatt caaccaattc taacggctga cgtacgatca
     5641 tacgagctgt ttcacgaccg aagtaaactt caagtgaacg ttggttgata gtaatgttac
     5701 ctgaacccgg tttgataaat acacgggctg aagagctttt gcggcgacct gtgccgtagt
     5761 tttgatttgc tgctgtcatt tttatgctcc gtgaattaga tatctaaaac ttgtggttgt
     5821 tgtgcttggt gattgtgttc tgaacctgcg taaactttta atttacggaa catttcacga
     5881 ccaagtggac cttttggtaa catacctttc actgcgattt caatcacagc ttcaggacga
     5941 cgagcaatca tttctttgaa ggttgcatct ttgatgccac ctacatagcc agtgtgccag
     6001 tagtagattt tgtcagtttg ttttttacct gttactgcta ctttgtctgc attgatcacg
     6061 atgatgtaat caccggtatc aacgtgtgga gtgtactcag gtttatgttt accacgaaga
     6121 cggcgtgcca attcagtcgc taaacgacct aatgttttac ccgtcgcatc tactacatac
     6181 cagtcacgtt gtactgtttc tggttttgct acaaaagttt tcattaatta aataccaaat
     6241 ttaaagttta aaacccaata cctcattgag gtatttccta ttattttacg gtgaacccga
     6301 ccccttcgag tctgattcag accaaacttg tgtggcgggg aaaaccacac aaaaacaggg
     6361 tggcgaaatt atacagagat ttcactcaaa aatctaacat tttttgctga taatctttca
     6421 aaattgaacc tatatcacat tttaatcatt tggagctttt caaataaaaa ctgaaatgtt
     6481 aaaaatagca gtaatcaatc actaaaacat aaggagttta tgatggaaca atggacaaca
     6541 gatgtttggg cagccattat ggcagcattt attgtaggtg ctgtaatagg ttgcactcta
     6601 gttagagtat ttaacagtag tgtcagaaaa cagcatgaac tggaaaaaga gttgaagcaa
     6661 accaaaactc aagtggatga gcaaaaacaa aaacttgaac aacactttga gcaatcagcc
     6721 caattacttt caagtttagc ttctgattat aaaaagcttt atacccattt agcacaaagc
     6781 tctgaaaagc tattaccaga agcatcaaaa aatattacct ttttccaaca aaccaaatta
     6841 cctattccgg cagaaaaaac ggaagaagat caacctagag attattccga aggttcatct
     6901 ggcttactga aatcataaaa ctaaaaattg aatatttagt tttactaaaa ggcacttagt
     6961 ttaaggattg attccgttgg aatcaatcct ttattctaaa ccgctacatt aagcagttaa
     7021 caacattttt cagctttaga tactgaactt aggttataag aagcctattt tgtaagagtt
     7081 attcccactc aatggttgcc ggtggttttc cgctcacgtc atacaccaca cgggaaatac
     7141 cgttcacttc gttaataatg cggttggaga ttttgcctaa tagatcatac ggcaagtgcg
     7201 cccagtgagc ggtcataaag tcgatggttt ccaccgcacg caagctgacg acccagtcat
     7261 atttgcgtcc atcgcccatt acgcccaccg atttcaccgg caagaatacc gtgaaagctt
     7321 ggctgacttt gtagtaccag ccggctttgt gcagttcttc gatgaagatc gcatcgactt
     7381 tacgcagtaa atcgcagtac tcttttttga tttcgcccag cacacgcacg cctaagcccg
     7441 ggccggggaa cgggtggcgg ttgagcattt cagccggtaa gccgagtgcc aagccgattt
     7501 tgcgcacttc gtctttaaac aattcacgca acggttcgac taagccgagc ttcatataat
     7561 ccggcaagcc gccaacgtta tggtgtgatt taatcacgtg ggctttgccg gttttgctgg
     7621 cggcggattc aatcacatca gggtagatcg tgccttgtgc aagccatttg accgagctaa
     7681 gttttttgct ttcgtcatca aacacgtcca caaacacttt accaatggtt ttgcgtttag
     7741 cttccggttc gtctaagcct tttaacgctt ctaagaaacg gtcttcggca ttcactcgca
     7801 caatgttcaa accgaatttg ttgccgaaca tttccatgac ttgatcgcct tcgttcaagc
     7861 ggagcaagcc gttatccaca aatacgcagt gcaggttttt accgatagca cgatgtaata
     7921 gcaaggcggt gacggaggaa tccaccccac ccgacaaacc taaaatcacc tcgtcatcgc
     7981 ccacttgctc acgaatgcgt ttcaccgcat cttcaatgat gttttctgcc gtccagttcg
     8041 tttcacagcc gcaaatgccg accacgaagt ttttcagcaa cgccaagcct tgtttggtgt
     8101 gggtcacttc ggggtggaac tgcacgccat agaaacggcg gctttcgtcc gacatcgcgg
     8161 caatcgggca ggttggggta acgcctgtga tggtaaagtg cggtggtaat ttggtgactt
     8221 tgtcgccgtg actcatccac acgtccaatt ttggctcgca agcggtcaaa tcatcgttta
     8281 aatttgcaaa aagttgatcg gcagatttga tagccaccga ggcatagcca aattcacggt
     8341 ggtcggacgt ttcggttaaa ccgcccaact gcatcgccat tgtctgcatt ccgtagcaaa
     8401 tgcccagcac tggcagacca gcgttaaaca catactccgg cgctcgtggg ctgttttcct
     8461 cagtggtgct ttcaggacct cctgaaagaa taatccccgt tgggttaaat tcacggatct
     8521 gctcttccgt tacgtcccaa gcccaaagct cgcagtaaac cccaatctcc cgcacacggc
     8581 gtgcgataag ctgagtatat tgtgaaccga agtctaaaat taaaattttg tggtggtgga
     8641 tgtttgtcat tgtaatttcc tttaaattat ggcgttgtgg tcatgttaat aaaagtgccg
     8701 cctaccccat cgtttctata tgtaataata aaagattgcg ttttattaca acctgttgca
     8761 gtccaaagtt cttttgc
//
LOCUS       DANLUT010000106         8759 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLUT010000106 DANLUT010000000
VERSION     DANLUT010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8759
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            6..1088
                     /gene="serC"
                     /locus_tag="PXB38_001798"
     CDS             6..1088
                     /gene="serC"
                     /locus_tag="PXB38_001798"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL5354089.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYVHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKAMLLYE
                     YLDSSKFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKAFEQCNA"
     gene            complement(1145..2122)
                     /locus_tag="PXB38_001799"
     CDS             complement(1145..2122)
                     /locus_tag="PXB38_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL5354090.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQASAEVFSRDVL
                     IMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAV"
     gene            2234..4801
                     /gene="glnD"
                     /locus_tag="PXB38_001800"
     CDS             2234..4801
                     /gene="glnD"
                     /locus_tag="PXB38_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL5354091.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            complement(4978..5736)
                     /locus_tag="PXB38_001801"
     CDS             complement(4978..5736)
                     /locus_tag="PXB38_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5354092.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNTANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
     gene            complement(5756..6634)
                     /locus_tag="PXB38_001802"
     CDS             complement(5756..6634)
                     /locus_tag="PXB38_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5354093.1"
                     /translation="MTYNAKGNWDFILQLRGKKLILLCTIAYTIGISTLLFQTLTHNP
                     ILTPSILGFDSLYLLLQTSLVFLFGGLGFTQLDPSYKFFFETLLMLGASILLFSSLNR
                     NRSDLTRMLLIGVIFGVLFRSLNNLLQRMIDPTEFAVAQGTSFASFNLTTPTLLWIGG
                     CIAILSAIWVWLQRHKLDILLLGKDKAIGLGLEYHQFSRQLLICCGLLVSVSTALVGP
                     ILFLGLLVCAIVNAISPTVCHSVRIPMTFLISAITLILGQAIFEQVLKMQGVLSVVIE
                     FIGGIVFIYLILKRKK"
     gene            complement(6687..7655)
                     /locus_tag="PXB38_001803"
     CDS             complement(6687..7655)
                     /locus_tag="PXB38_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5354094.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKGKRAEEKARG"
     gene            complement(7749..8519)
                     /locus_tag="PXB38_001804"
     CDS             complement(7749..8519)
                     /locus_tag="PXB38_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5354095.1"
                     /translation="MFDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFE
                     PDLEALNSLNPDLIIVGTCTAKTFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLF
                     NKEAETEKLKAEINTLLDQTKVAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGI
                     PMADSSIKNTGHGQPVSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTK
                     AWKNGNIVYLSAASYLAPGGYEQMKTDLTNIKTAFEKK"
     gene            complement(8480..8644)
                     /locus_tag="PXB38_001805"
     CDS             complement(8480..8644)
                     /locus_tag="PXB38_001805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354096.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTAERLLSKKPRLKLPCL
                     TPEVWILYKP"
BASE COUNT         2853 a         1718 c         1742 g         2446 t
ORIGIN      
        1 gaaaaatgac agagatatat aacttcagtg ccggcccggc aatgatgccg aaaaaagtac
       61 tcgaaaaagc gcaacaagaa ttattaaatt ggctagacca aggcacatca gtgatggaag
      121 tcagccaccg tggaaagcta tttatggagc tggcggcaca atctgaagca gatttacgca
      181 agctgtataa tgtgccggac aattatcgta ttctatttct tcaaggtggt gcaagggggc
      241 aatttgcagc cattccaatg aatttaatcg gtaaaaaagg caaagcgctt taccttaatt
      301 cagggcattg gtcggcaaca gcagcaaaag aagcacgtaa ctttgcggaa attgatgaaa
      361 tcaatatttt agagactgaa ccgcaactta aagtgagtcg tttagatttc agcgatattg
      421 cagagcaata tgattatgtc cattattgca ccaatgaaac catcagtggg gtagaaattt
      481 tcgatattcc gaatgtcgga aataccccgt tagtggcaga tatgtcgtct aatatcttag
      541 cccgagggat tgatatcaac aaatttggag taatttatgc cggagcgcaa aaaaatctag
      601 ggcctgctgg cattacgatt gtgattattc gtgatgattt aattggcaat gcacgcaaag
      661 ataccccatc tatttggaat tatgcaactc agcgagatgc tgattcgatg attaataccc
      721 cgccaacttt tgcttggtat ttatgttctt tagtgttcca acatttactg gcagagggtg
      781 gacttaaagc tactgaagaa cgtaatcttg ctaaagctat gttgctttat gaatatttgg
      841 atagctctaa attctattac aatacggtag cacacgaaaa tcgttccttg atgaatgtga
      901 cttttaccac tggtaatgat gagctaaatg caaaatttgt ggcagaagcg accgcttgtg
      961 gtttacaggc attgaaaggc cataaagtat taggtggaat gcgtgcctca atttataacg
     1021 caatgccgat tgatggggtg aaagcactca ttgaatttat gaaggcattt gaacaatgta
     1081 atgcttaatt caagcttaaa catataaatt aaagagccac gtttgtggct ctttgaattt
     1141 ggtactagac cgcagtttta aacaaataga aattatagcc tacataagcg gcaaagagta
     1201 ataagccctc taaccggtta attctgccac cttctgtccg acgatagagg ttgattccga
     1261 aaatgaatag taagaaggta agggcagaca ttatcaaaac atctcgagaa aacacttccg
     1321 ctgaagcttg cattggttct atagcaccgg caatccccac cacggctaac gtattaaata
     1381 agttagaacc gataatgtta cctaaagcta aatccacttc tcctttacga gcagctgcaa
     1441 tagaagaggc taattcaggt agtgaggtgc ctaccgccac aatagtaagc ccgattacca
     1501 aatcactcac accaaaaaat ttagccactt caactgctcc ccagactaag aattgggaac
     1561 taattactag cgatactaaa ccaataatta gccaaagaat ggattttcct aatcccatct
     1621 tagcactatt ggttaattct gcatcaacat ctaagcttaa tgcatcattt ttacttttca
     1681 ttgcggtaat aattgtccac gccatatata caaaaaacac agcaagtaaa ataatcgcat
     1741 caagttgagt gacgtttgca tcataaacca aataagcaga aagcagggtg acagccagta
     1801 aaatcggcaa ctcttttttt aacacatcgg aattaactga tagtggttta attattgcgg
     1861 ttaaacctaa aatcagcgca atattggtaa tgttagaacc gtaggcatta ccgagagcga
     1921 tacccggcga tccgcttaat gcagaagatg cggatacgag catctccggt gcagatgtac
     1981 caaaaccaat gaccacaata ccgattaaca atggtgtcat accaaaatgg cgagccgtag
     2041 aggctgcccc ttctacaaaa cgatccgcac tccaaactaa tataattaag ccaccgataa
     2101 tagcggcaac agcaagtgtc ataaactatc cttttagatg aaaaacataa aggcattata
     2161 agcattttag ccaaaataaa tataggcaaa cgaaaataaa tgacctatta ttttgccagt
     2221 ttaggaagag attatgatga aaaacagcaa cgaattaaaa acgcttttat cagcatttac
     2281 ggagcaacag cggcaagcat ttcaatccga aaatgtactc agcttacttg cacaacgtag
     2341 ccaattttat gaccaactac tgcaagcact ttggcaagat tttggactcg ctcaatatga
     2401 acatattacc ctattagcgg taggggggta cggacgtgag gagatgtttc cgctttcgga
     2461 tctggatatc ttagtgttaa ctgaaaaacc gctagaagag gctattcagc agcgtttaaa
     2521 cgaactattt gccttgcttt gggacagcaa actgcaactt ggcaccagtg tgcgtacgct
     2581 cgaagaatgt attcagattg ggaaagcaga aatttcggtt gccactaata tgttggaagg
     2641 gcgattttta ttgggtaata aatcgctttg gctaagatta aaagaagcac tttatcagcc
     2701 ggatttctgg gatattaaag cgttttttag agcgaaaatg gcggaaaaaa atgagcgtta
     2761 tgcacgttat cataatacta gctataacct tgagccagat ctcaaacata gcccgggagg
     2821 attgcgagat ctgcatttaa tctcttggat tatgctacgg cattatggtg tatcttcttt
     2881 tgtcgatctc ctcaataaag ggctacttta cccggaagaa tataaggagc tgatcgcagc
     2941 acaagcggta ctttttcgga tgcgttttgc acttcatttg caactgaaac gttacgataa
     3001 tcgccttcgg tttgacagac aattacaact gagtgaaata ttaggctacc aaggcgaagc
     3061 aaatcaagcg gtggaattaa tgatgcgaga ttattttcaa gccacaaaat ctatttcgca
     3121 actgagccaa ttattgttaa acagttttga acaagcctat gtaaacgagt tgcaaaaaaa
     3181 tgcacaaaaa caaccgcttg atcagtattt ttatcggcaa gaacagcaat tgtttgtggt
     3241 cgaacgcaaa atatttaaaa cccaacccac aacaatgttg gatctctttt ttcatcttac
     3301 taatgaccct acgttaatag cgaatgccga caccttacgt cagttgagac tgtgtttaca
     3361 gcaacaacac gagcctatgt gctttttgcc tgaaatgcga gagaaattcg tacagctttt
     3421 tgctcaaccg aaagtcataa gccgagcaat agttccaatg caccaactgg gttttttaag
     3481 tgcttatcta ccgcaatgga aggggatcga agggctaatg caattcgacc tattccatat
     3541 ttatacagtc gatgagcata cggtcagagt catgttaaat ttagaaaatt ttagcgaaga
     3601 tccaagtcgg gcgtttttcc cactatgtca tcagctattt gcaacgcttt ctgagaaacc
     3661 gttgctctat cttgcggctc ttttccacga tattggcaag ggtagagagg gcgaacacgc
     3721 tcaagttggt gcgctggata tgcgagaatt tgcggaacta cacggttttt ctcaagcaca
     3781 aatcaatgat atggtttggc tggtggcaga gcatttgaca atgtcgatca ccgcacaaag
     3841 acgagatatc cacgatccgc aaatcatcag cgaatttgca aaaaaagtgc aaaatcagac
     3901 cgctttatct tcactacttt gtttaacggt tgcagatatt tgtgcaacca gtgagagcct
     3961 ctggaatgat tggaaagcct cgctgtttac ccaattatat caatttacgc tacagcaact
     4021 ggctcaaaat ttgaattatc aagcagtggc acaagagcat cgcttgcaag cattagaact
     4081 gatgaagttc gtgctttcag ctgatgagcg aatagcatta aacgcatttt ggcaaccttg
     4141 cccggagcgt tattttcttc accatacacc gactcagttg gtatggcacg ctctgcatta
     4201 tgtaaaaact cgccggttgc cgatggtttt aatcagtaat gaatatgccc gtggtggtac
     4261 agaaattttt gtatgttgcc aagatcaacc tcaactgttt gctcgaatcg cccaattact
     4321 cagccaaaaa cgcattagca ttcacgatgc acaaattatt actactgaaa atggtgtagt
     4381 gttagacagc tttattgtaa gtgagcgtga tggtgatgat gatttaaccg atgagagatg
     4441 tatgcaaatt cagcaggcga tgatgaaaat gttaagctta actgaaacag gcataaaatt
     4501 taccaaaaaa ccggtgaaac atttgtcatt taagcgtaaa actcggctgc gttttcttcc
     4561 tccgtcatca aagcaacaaa ccgaatttga actttttacc ttggatagag aagggttgtt
     4621 ggcacaaata ggctatattt ttaaccggct ccgattaaat ttaattaatg cgaaaattac
     4681 gactattggt gaaagggtag aggatttctt tgtggtcagt aatgatcaag gaaaagcttt
     4741 atcggaacaa gaacagttag aactaaaagc cattctaatt accgaactag atagtgaatg
     4801 aaaacaaccg cttggagtga agactgcaag cggtaaattt ttcaacgttt taggtaaatt
     4861 aaatcacgag ttaagagagg ttgagaattc aagaaattag aaactaaata taagtttcta
     4921 tcgtttagat taataaatta agacgcaatt tttattaatt accatgatct tcaaacgtta
     4981 aatatgatga ataactaaag gtttgccttg gcattctaac acttcggcat caagattaaa
     5041 cactgttttt aaattttcag tggtgataat ctcttttggg gtgccgatca tcttaattcc
     5101 accatctttc attgcaataa tagtatctgc gtaagcagca gcaatgttga tgtcgtgtac
     5161 caccattata gtagttaagg cgagttcatc ggttaatttt cgtaataatt tcattaattc
     5221 ccgagcatgg aacatatcta aattattcag tggttcatct aataagatat gatcggtttg
     5281 ctgacagaag gtcattgcaa ttaatgcccg ctggcgttgc cctccggata attcatttaa
     5341 gaatcggtgg gagaaagtcg ataaatcaaa tcgtaccaga gcctcttcta caatggcatt
     5401 atcgtgcgaa gtgattctgc cttgatgatg agggtaacgc ccaaataaca gcagatcttt
     5461 gacggtaata cggctatgaa tcacattatc ttgggtcaag atagccagtt gtcgagcgat
     5521 agtttgagaa gctgtgttgg ctgtattcag ctcatttaag tggatttcac cctgttggat
     5581 aggttgcaag cgtgcaatta aagagagcag ggtggatttg cccgcaccat ttgctccgat
     5641 taaagcggta ataccaccat ttggaatggt taaattgata ttattcagaa tcgtggcatt
     5701 cccgattttg tggtgaagat ttttaaccgt tatcattttc ttccttaatt tatggttatt
     5761 ttttccgttt taaaatgaga taaataaaga caataccgcc aataaattca ataacgacac
     5821 tcagaacccc ttgcattttc agcacttgct cgaagattgc ctgccctaaa attaaggtga
     5881 tggcagagat taaaaaagtc attggtattc gcacgctatg gcaaacagtc gggctaattg
     5941 cattaacaat ggcacaaaca agtagcccta gaaatagaat cgggccaaca agtgcggttg
     6001 aaacagacac caacaatcca caacagatta gtaattgacg tgaaaattga tgatattcta
     6061 acccaagccc aattgcctta tctttgccaa gtaacaaaat atctaattta tgccgttgta
     6121 accagaccca aatggcagag agaatagcga tacagcctcc aatccaaagt aatgtagggg
     6181 tagtcaggtt aaatgaggca aaagaagtgc cttgagcaac ggcaaactct gttgggtcga
     6241 tcattcgttg caacaaatta tttaggcttc taaataagac accaaagatg acaccgatta
     6301 aaagcattcg ggttaaatcg gatcgatttc gattcagtga actaaatagt aatattgatg
     6361 cccctagcat taacaaggtt tcaaagaaaa acttatagct tgggtctaac tgagtaaagc
     6421 ctaaaccgcc aaataaaaat actaacgagg tttgcaatag caagtagagc gaatcgaacc
     6481 ccaaaatact tggagttaaa ataggattat gtgtgagtgt ttggaatagc agggtcgaaa
     6541 taccaatcgt ataagcaata gtacagagca aaataagctt tttgccacgc agttgcaata
     6601 taaagtccca attacctttc gcattatagg tcatataaaa cagaatactt gctaataaga
     6661 ttaagcttaa aacgataaag cgtgatctaa ccacgagcct tctcctcagc ccgtttccct
     6721 ttgagcaata aatagaggaa aatcactgtc ccaataatcc caaaaatagt agaaatcggc
     6781 acttcataag gggcattgat ggctcgccct aaaatgtcac aaatcaggac taaattcgca
     6841 cctaacacca cgaccgcagg cagattttta cgcaatcggt cacctgctat gcgagagaca
     6901 atattaggga cgaccaagcc gataaacgga atctgtccaa ccgtcaccac gacaatagcg
     6961 gtaatcatcg ccaccacaat taaggcaagc caagtcattt gtttgtagtt aatgcctaag
     7021 ttggtactaa tattttcacc aaggcctgca atggttaatt gatctgccat cacataaacc
     7081 acaacagcca gaatagcggt aatccagagc agttcatacc gacctgccaa aataccggag
     7141 aaatcgccgg aaaaccaaat cgaaagcact tgtaggctgt cagtttcata agcaataaaa
     7201 gtgctgatag cttcaataac attgccaaaa acgatcccga ttaatgggag cattaattgt
     7261 tgatgaggcg gtaattgacg aatgagcaac ataaaaagcc ccattcccat taatgcactt
     7321 aatgtggcaa tagacatttt taacagtaat gctgatgttg ggaaaagtaa actagcaagt
     7381 aaaataccaa ttgccgcact ttggctagtg ccaatcatac taggctcaat aaagcggttc
     7441 ttcagcacaa tttgtaatac catacctgca acggctaagg ttgcaccgac taatatcact
     7501 gcgagcgttc ttggtaaacg gctgataaaa aagatctgac tttgttcgga agaatgaaaa
     7561 atttcactcc aatgaaaatc tgccacaccc acactggcac tgattggaat gagcaatatt
     7621 aaaagaaata gatttaatct aaaaaaagag aacatagtga taaatagcaa gcggtcatat
     7681 tctctctctt ttttacaaat gcaggcactt gcaaaaatag gaggaaatct gaccgcttgt
     7741 aaggttaatt attttttctc aaatgctgtt ttaatgttag ttaggtcggt tttcatctgc
     7801 tcataaccac ccggcgctaa atatgaggca gcacttagat aaacgatatt accgtttttc
     7861 caagctttag tttgacgaac taattcatta tccaacactt gttgggctga ttgaccttct
     7921 tgtccgatag ccgcaatacg gtctaacaca aacaaccaat ccggattgag tttttggata
     7981 aattcaaacg aaacaggctg accgtgaccg gtatttttaa tgctagaatc tgccattgga
     8041 atccctaaat tatcgtgaat ccaacttaaa cgataacctg aaccaaatgc agaaattttg
     8101 ccaccattga ctaaaataat cagtccgtta cctttacctt ttactgccac tttggtttgg
     8161 tctaataaag tattaatttc tgcttttagt ttttcggttt ccgcttcttt attaaataat
     8221 ttgccgaaag aatcaagacg ctgtaatccg ctttcgatta atttatcgcc attatccgtc
     8281 atgtcgatgg ttttcgcaat ttggctgact tcatcaaatg tttttgctgt gcatgtgcca
     8341 acaatgatca aatccggatt taaagaattt aacgcttcta aatccggctc aaataccgta
     8401 ccgacattca ccgctttgtc tgcactcggt ttaagataag aaagcacctt aaattcaggc
     8461 ataccatcaa tttttacacc taaggcttgt aaagtatcca aacttccggt gtcaaacacg
     8521 gcaattttag acggggtttc tttgaaagta acctctctgc agttggaata gtaacatctt
     8581 tggcaaatgc agaagcagca aacacagcag ttgcggtcaa tgcaaacaag gcttttttaa
     8641 tcattggata actccattta tattgaaaat aattctcaaa gattttaacg aaaattgatt
     8701 ttaagtaaag cggaaaataa caagcgggcg aattttgcct aaaatttgca aatttcaat
//
LOCUS       DANLUT010000107         8708 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLUT010000107 DANLUT010000000
VERSION     DANLUT010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8708
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..598
                     /locus_tag="PXB38_001806"
     CDS             <1..598
                     /locus_tag="PXB38_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5354097.1"
                     /translation="NRIDKGNRKFIAVQYPEEIDIKSKNGKVAKQFCQRKNLPLYITE
                     ISKERIRRAGKQILQNNPENRPLDVGFKVFKLTESHFKQWQSPTSENLADQLEMFIDP
                     VSEKADTQAVLYELLLRLGLKLTAKVRLENKVFWVEENGLIFALLLNAADEEIIQTVI
                     AQQPKKVIALDRLFNGNDARKKNTELQMQDAGITFFVI"
     gene            608..3244
                     /locus_tag="PXB38_001807"
     CDS             608..3244
                     /locus_tag="PXB38_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5354098.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQISRLKSF
                     ASANHIEILVMNIDSFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEISFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     DATKIKHSKVKLEMNETGISTNYRSSNETAVNKQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEQINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSVEYCKI"
     gene            3376..5808
                     /gene="gyrB"
                     /locus_tag="PXB38_001808"
     CDS             3376..5808
                     /gene="gyrB"
                     /locus_tag="PXB38_001808"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL5354099.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLLWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5861..6823)
                     /gene="cmoB"
                     /locus_tag="PXB38_001809"
     CDS             complement(5861..6823)
                     /gene="cmoB"
                     /locus_tag="PXB38_001809"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL5354100.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLMPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(6920..8683)
                     /locus_tag="PXB38_001810"
     CDS             complement(6920..8683)
                     /locus_tag="PXB38_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HDL5354101.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNQNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
BASE COUNT         2756 a         1686 c         1865 g         2401 t
ORIGIN      
        1 taatagaatt gataagggta atagaaaatt tattgcggtt caatatcctg aagaaattga
       61 tatcaagagt aagaatggaa aagtagcaaa gcaattttgc caaagaaaaa atttaccact
      121 atatataact gaaatttcaa aagaacgtat tcgccgtgcc ggaaagcaga ttttgcaaaa
      181 taaccccgaa aaccgaccgc ttgatgtagg ttttaaagtc ttcaaactga cagaaagcca
      241 ttttaaacaa tggcaatcgc ccacatctga aaatttagcc gatcaacttg aaatgtttat
      301 tgatcctgtt agtgaaaaag cggatacgca agccgtttta tatgagcttt tattgcgttt
      361 agggttaaaa ctcacggcaa aagtgcggtt ggaaaataag gtgttttggg tggaagaaaa
      421 cgggctgatt ttcgccttgc tgttaaatgc agccgacgaa gaaattattc aaactgttat
      481 cgctcaacaa ccgaaaaaag tcatcgcttt agaccgttta ttcaacggca atgatgcccg
      541 gaagaaaaac accgaattgc aaatgcaaga tgccggcatt acgttttttg tgatttaagg
      601 agaaaaaatg gaactccaat ttgaaacctt agagtatcaa ttacaagccg ttaatgccac
      661 agtaaatttg tttgtcggac agccgaatgc cgcaactgaa ttttcactca aagcccaaaa
      721 tgatatgcgg tttgtgccga atttaggctt gcagattagt gatgagcagt tacaacagaa
      781 tttggctaat ctgcaaaaca ggcaaaaaat cgaccgcact ttgcttgtcg aacagggaaa
      841 aaattttacc gtggaaatgg aaaccggtac agggaaaacc tatgtctatt tacgcacgat
      901 ttttgaatta aaccgtcaat acggctggca aaaatttgtg attgtcgtgc cgagtgtggc
      961 aattcgtgag ggagtgttgc atacgttgga aactacaaaa agccatttta atacggtatt
     1021 tgataacccg agcgtcaatc aaaaatttga atataaaagc aaccaaattt cacgcttaaa
     1081 atcctttgct agtgctaatc atattgaaat tttagtgatg aatattgatt ctttcaccaa
     1141 agaaagtaac gtgattaata ccgtgaatga aagcggtgat gctccgattt tctatattca
     1201 acaggcgaat ccgattgtga ttattgatga accgcaaaat atggaaacgg agattcgccg
     1261 taatgcgatt gagagtttaa gtccgctttt cactttgcgt tattctgcca cccataaaaa
     1321 tgcgtataac ccgattttta gcctcaatcc ggtgcaagcc tatgaaatgg gattagttaa
     1381 acaaattgag gtagatagcg tattggcgga aaatgaggta aatggagctt atctttccct
     1441 caaagagatt aaaacagggg caaaaagctg gtcggcaaaa atcgaaattt catttaacga
     1501 taaaaaagcg atgaaaaaga aagtgattag cgtgaaaccg aatcaggatt tgtatgagct
     1561 ttccaaccaa aatgaaatgt atcgttcagg gtttatatta agcggaatgg ataccgatag
     1621 ccaaatggtt agcttctcca acggcacaca aatttttcaa ggggcggaac attcccaact
     1681 taaagaagat gtgcaaaaaa tgcagattcg ccgcactatt ggcgagcatt tgcaaaaaga
     1741 aaagaaatta cgaccgcttg ggatcaaggt gttgtctttg ttctttatcg ataaagtgga
     1801 taattatcgc ccttctgcac aaagccctac ggggggaaaa tttgcaaaat ggtttgagga
     1861 aatttatttg gagctagcca aagaagagcc tcaaggcgtg cataacggtt atttctcaca
     1921 ggataaaaaa ggcgtagcaa aagatactaa tggcacaacg caagcggata acgagactta
     1981 tcaactgatt atgcgggata aagaaaaatt gctttcgctg gagaatccgt tacggtttat
     2041 tttctcgcat tctgccttaa aagaaggatg ggataatccg aatgtgtttc aaatttgtac
     2101 tttaaacgat actgcaagcg aaatgaaaaa acgccaagag attgggcggg gcttgcgttt
     2161 gcctgtgaat caacaaggat tgcggattta tgatcgtcat ctaaatacgc tgacaattat
     2221 cgcaaatgaa agttacgaac aatttgccgc cacattacag cgtgaaattg aggaagattg
     2281 tggtgtacag tttgccaaaa gcaatgttaa aaaacgggaa gataaaaaag ccgttcgcta
     2341 ccgtaaagat ttcagcttac atccggaatt tgcggcaatt tgggaacgga ttaaacacca
     2401 aaccacttat cgggtagatt tcagtaatgc ggaattgatt gaaagtgcgg tggaaaaaat
     2461 ccgcaaaatg cccgatatcg acgcgacaaa aattaagcat tccaaagtga aattggaaat
     2521 gaatgaaaca gggatttcaa ctaattatcg ctcatctaat gaaacagcgg taaataaaca
     2581 atgggcgata cctgatttat tgagtgagat tcaaaagaaa accgggctga cgcgtgcgac
     2641 cctttgcaaa attttacaaa aatccgaccg cttgcaagaa gtcttccgca atccgcaacg
     2701 ctttattgat ttaattgcag agcaaatcaa ccttgcttta caacaaatta tgacagacgg
     2761 ggtggaatat cacaaaattg ccggaaaaac ctatgaaatg acgttattcg gcgattttga
     2821 tttttacctc aatcaatata cttttgaagt tcaagataaa acaaaaacga tttatgaaga
     2881 ctatattgca ctggattccc aaacagaaaa tatcttcgcc cgacattgtg aatctagtga
     2941 gcaagtggag ttttatttta aattacccaa acgttttaaa attccaacgc cattaggcag
     3001 ctataatccc gattgggcag ttgtgtttaa gggagaaaat aaaatttact tggttgccga
     3061 aacgaaaaat acaggcaaag gtattcaagc aggagtagat gaagaaaaat tagatgaaag
     3121 tgaacgaatg aaaatcgact atgcccgtaa gcatttcaaa ggcttacaga gagattataa
     3181 ggatttggat tatagggttg tacagaaagt ggaggagctg tctgtggagt attgtaaaat
     3241 ttaatctgtg gtcttgtaga attgagatag actgcaattt caactaaaat ttaaccgctt
     3301 gttttgcgat acttttacgc atttttctgc tataatcggc acaatttttt cgatttcaaa
     3361 ttagtaggaa taagaatgtc tgaacaaact caagcaacaa gttatgattc ttccagtatt
     3421 aaggtgttac gcggcttaga tgcggtgcgt aaacgcccgg gaatgtatat cggcgatacc
     3481 gatgacggta cgggcttaca ccatatggtg tttgaggtgg ttgataatgc gattgacgaa
     3541 gcattagccg ggcattgtaa agacattatt gtcacaattc attccgataa ttcggtttct
     3601 gtgcaagatg acggtcgtgg aattccggtg gggattcacc cggaagaagg cgtttcggca
     3661 gcagaagtca ttatgactgt tcttcacgca ggcggtaaat ttgacgataa ctcctataag
     3721 gtttccggcg gtttgcacgg tgtgggcgta tcggtggtga atgcactttc ctctaaatta
     3781 caactcacta ttcgccgtga aggacacgtt cacgagcaat tctatagctt aggtgagcct
     3841 gatgcacctt tagcgattat cggcaatacc gaaaaaacgg ggacgtcggt tcgtttctgg
     3901 ccaagtttgg atattttcaa aaataaaacc gaatttgaat ataaaattct gtctaaacgc
     3961 ttgcgtgaac tatcattttt gaattcaggc gtttcgatta aattaattga tgaacgagac
     4021 ggcaaagaag agcattttaa atatgagggc ggtattaaag cctatgttga gtatttaaac
     4081 gaaggcaaaa ctcatattca caatacgcca ttctatttga ccactgagaa agacggcatt
     4141 ggcgtggaaa tttccctact gtggaatgac agttacaacg aaaatgtgta ctgctttacc
     4201 aataatattc cacagcgtga tggcggtacg cacttagccg gtttccgtgg ggcattaact
     4261 cgtgcgttga aaaactatat ggataacagc ggggtattga aaaaagccga tgcgaacatt
     4321 gatgcctcag gtgatgatgc ccgtgaaggt ttagtagcgg tgatttcggt gaaagtgccg
     4381 gatccgaaat tctcctcaca aaccaaagat aaattggtgt cgtcagaagt gcgtggagca
     4441 gtggaaagct caatgaatga ggctttatcc gactatttag ccgaaaatcc ggacgatgca
     4501 aaaaatatcg ttaccaaaat tattgatgca gcccgtgcaa gagaagcagc tcgtaaagcc
     4561 cgtgaaatga cccgccgtaa aggggcgtta gatttaggcg gcttaccggg taaattagct
     4621 gattgtcagg aaaaagatcc ggcgttatcg gagctttact tggtggaggg tgactctgcc
     4681 ggtggctcgg caaaacaagg gcgtgaccgt aaaaaccaag cgattttgcc gttaaaaggg
     4741 aaaattctga acgtggaaaa agcccgcttt gataaaatgc tttcttcaca agaagtagca
     4801 accttgatta ccgctttagg cacaggcatc gggcgtgatg attataattt ggaaaaatta
     4861 cgttaccaca aaatcattat tatgaccgat gcggacgtgg atggtgcaca tattcgtacg
     4921 cttttattaa ctttcttcta ccgtcaaatg ccggagctga ttgaaaacgg ctatatttat
     4981 attgcacagc caccgcttta taaagtgaaa aaaggtaagc aagagcgtta tattcaagat
     5041 aacgatgaaa tgtcgcaata tgaaattgat attgcattag aaggtgcagg cttatatgtg
     5101 agtgaagatg ctccagcgtt aagtggcgta gcgttagaga acttaattgc ccaatataac
     5161 ggcgtacaaa aattaattga acgtttaagc cgtcgttacc caacattatt acttaacgaa
     5221 ttaatttatt caaaaccgct ttcggtggaa tttgcaaaaa atcaagcaaa tatgaccgct
     5281 tggagcgagc aatttgtcgc tacattgatg gcaaaagagg tgggcggcag tttctaccgt
     5341 attaatacct tgttcaatga agaacgccaa atttatgagc cggaaattat tgtgactaca
     5401 cacggtatgg acagtaccta tcgtttagat tacaacttta tcaacggtaa tgaatacgct
     5461 cgcattgtgg cattaggcaa cgagctgaac gatttactat ctgattcagc ctatgtggtg
     5521 cgtggtgaac gtcgccaaga aatcagcagt tttgctgaag ccttagattg gttggtgaaa
     5581 gaatctcgta aaggcttaac tattcaacgt tataaagggt taggtgagat gaatccggaa
     5641 caattatggg aaaccacgat ggatccggtg gctcgtaaaa tgctacaggt caatattacc
     5701 gatgcgattg cggcagataa actcttcagt acgctgatgg gcgatgaagt tgaaccacgc
     5761 cgagatttca ttgaaactaa cgctttgtat gctcagttag atatttagtt aaaaaatccg
     5821 catttgacat gcggattttt tattctctta aactagcatt ttaagcattc gctaaaatca
     5881 ccgcccgctt cggagcaggg tagccttcaa tggttttgct atgatcgttt ggatctaaaa
     5941 aatccactaa actttcattt tccaaccaat cggtttttcg ctgctcttct agtgtagtga
     6001 ttgcctcatc aacacaacgc acatttttaa agccgacttt ttccagccaa ttaatgagtg
     6061 cagcaacaga aggaataaaa tagatatttt tcattttcgc atagcgatca gccggcatta
     6121 aaacatcatt aatatcgcca tcaatcacca gcgtttctaa caccaattca ccgcctctga
     6181 ctaattgggc tttgagttga gaaagatgat caagcggtga tttgcgatga taaagcaccc
     6241 ccattgaaaa cacggtatca aaagcagcaa gcggttgcat ttgctcaata ccaagtggaa
     6301 tcagattagc ccgtctatca ttccctaaga gtttccgcac tgcctcaaat tggcacagga
     6361 acagctcggt cgggtcaata ccaactacca tttttgcccc ttcgcctacc attcgccaca
     6421 tatgataacc gctaccgcag ccgacatcta aaatggtgcg gtcttttaac ggtgcaagat
     6481 gcggaagcac acgatcccat ttaaaatcgg aacgccattc ggtatcaata tgaatcccgt
     6541 gtagatgata agggccttta cgccacggca ttagttgctt taaatggtgg gtaatttgct
     6601 tgacttcccc ctcagataaa ggcttgcttg aaatagactc aaccttgtct tttagattga
     6661 tacaagcggt cgaatttggt aaaaaatctg caacttttgc ccacttggca tagtcagcgt
     6721 gggtggtctt ttcccattgt ttgagttgta agggtaaggt ttctaaccaa gcagaaaggt
     6781 cggttgtggc aatttgttga taaaaaggac gaaagtcaat cattttgaaa tttatgtcta
     6841 ggggagagac ctatgccctc ccgaaaggta gtaaatagaa aggacaggca cagaacctac
     6901 ccctacgaaa aatataaaat tatctcgcaa tcggatttac tttcgctttt tgcactttgc
     6961 gataagcgtt cagtaatttc tgatgtgcag tcatattttc aagcgattcg tccgatgcag
     7021 ttaaaccgtg gaacgggtta ccgccttgga ttgcacccca agcagcttca accgcttgtt
     7081 taccgtacat tttctcaaac accatacgat attgttccga atcacgctct tcatctaaga
     7141 acaactcaat cgattggatt aagcagcggt aataattgtt acgttctgct gagaatacgc
     7201 ttgcattcat attcgctgtc cagtttgccc agtctgaggc ttgctctaag ttacctaaag
     7261 ctaaatgcag catcgattta agctcaccga tacgcaatgt ttgcattgca gagcctttct
     7321 ctgccaccac gccaataaat tcacgcacac gggttaaatc atcaatgctt tgctcatcta
     7381 attcatcaag cagttcttgg taagtttcag catcgtgatg gaaatgtggc aaatctaaca
     7441 agatttcacg ccaatccata cccatattgt tattggcata gaccaaatca tcgcttggat
     7501 agatattcga catacccggt gcaagaatac ggcaagcgta cacacctaaa tgctcataat
     7561 ccataatata cacaggctga ttatgcttgt tgaaaatcgc catcatatta ttaaattctt
     7621 gctccgttgt gccggagaag tcccaatgca cgaacggata atccgcatca cgtttgaaaa
     7681 gatcccacga aattagaccg cttgaatcaa taaagtgtgt ctcaaggttc gcatgatctg
     7741 ctacatcttc attattaaat gaaggtgggg caaacacatc taaatccttt aagctacggc
     7801 cttgtaataa ctcggttacg gtacgttcaa acgccacttg gaaattcggg tgtgcaccaa
     7861 aagaggcaaa acaagtaccg ttattttggt ttaacaagat cacacaaata actggaaatt
     7921 ctccgcctaa tgaagcgtca tagcataaaa tcgggaagtc ttcttgctct agtttctcga
     7981 tagaggcttt gattgtcgga taaccgtcaa tcacactttg cggaatttcc ggcaagctga
     8041 ttgcctcagt aataatacgg tttttgacaa aacgctcgaa cacttcggat aagccctgca
     8101 ctcgagcttc attttttgtg ttgcctgccg acataccgtt tgaaacaaac aggttgccga
     8161 taatgctttg cggaatgtaa accgtttcat tgtcagattg gcgaacgtaa ggtagggtaa
     8221 caattccacg atcataattt cctgattgta aatcaaccaa taattccggc gtgatttcac
     8281 cattcggatc aaaatattcc cataaaaact cgtccatcat ctccattggt ggaatggctt
     8341 catcatcaat cggaaaccat ttttcggttg gataatgcac aaattcacta ttagcaatct
     8401 cttgacctaa ataaaaatcc gcccagaaat agttggtaga taaacgctca aaatactcac
     8461 ctaatgcaga ggcaagagcg gcttttttgc ttgctccctt accgttagaa aaacattgcg
     8521 ggcagtctgc atcacgaata tgcaccgacc acacattcgg aacaggattt aaccaagagg
     8581 cttcttcaat attaaaacct aaggttttta atttatgctg aaaggtcgca atgctgtctt
     8641 caagtgcagc atctttaccg gtaataaaag tttgttctga catgataata cctttaactt
     8701 gtcgtaaa
//
LOCUS       DANLUT010000108         8595 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLUT010000108 DANLUT010000000
VERSION     DANLUT010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8595
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(77..280)
                     /locus_tag="PXB38_001811"
                     /pseudo
     CDS             complement(77..280)
                     /locus_tag="PXB38_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
     gene            complement(282..527)
                     /gene="nqrM"
                     /locus_tag="PXB38_001812"
     CDS             complement(282..527)
                     /gene="nqrM"
                     /locus_tag="PXB38_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL5354102.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            complement(540..1574)
                     /locus_tag="PXB38_001813"
     CDS             complement(540..1574)
                     /locus_tag="PXB38_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL5354103.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEQPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            complement(1623..1916)
                     /locus_tag="PXB38_001814"
     CDS             complement(1623..1916)
                     /locus_tag="PXB38_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5354104.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            complement(1909..2343)
                     /locus_tag="PXB38_001815"
     CDS             complement(1909..2343)
                     /locus_tag="PXB38_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5354105.1"
                     /translation="MEQLDITALENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            complement(2455..3684)
                     /gene="nqrF"
                     /locus_tag="PXB38_001816"
     CDS             complement(2455..3684)
                     /gene="nqrF"
                     /locus_tag="PXB38_001816"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL5354106.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            complement(3695..4291)
                     /gene="nqrE"
                     /locus_tag="PXB38_001817"
     CDS             complement(3695..4291)
                     /gene="nqrE"
                     /locus_tag="PXB38_001817"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL5354107.1"
                     /translation="MEHLLSIFVKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            complement(4293..4919)
                     /locus_tag="PXB38_001818"
     CDS             complement(4293..4919)
                     /locus_tag="PXB38_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL5354108.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            complement(4919..5692)
                     /locus_tag="PXB38_001819"
     CDS             complement(4919..5692)
                     /locus_tag="PXB38_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL5354109.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIVNPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            complement(5685..6920)
                     /locus_tag="PXB38_001820"
     CDS             complement(5685..6920)
                     /locus_tag="PXB38_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL5354110.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            complement(6923..8281)
                     /locus_tag="PXB38_001821"
     CDS             complement(6923..8281)
                     /locus_tag="PXB38_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL5354111.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
BASE COUNT         2583 a         1928 c         1516 g         2568 t
ORIGIN      
        1 catttaagct caaattaatc tgacaggcac tataatttta aacgggaact gtcagattag
       61 gtttgatctt ctacacataa atatcaactt caccttccca ttttaaaata tcttgcatta
      121 acttccacgc taactcgtgt gtaatctcaa aactctggat aattcctttt ttaattacat
      181 caatgtcggt atcagcgtat ttttctgctt ctgcttgaag gtaacttact gatttttgat
      241 agttatcaaa ccgctgtttc cagcgaatat ctctattcat attatttcac ttcataaaat
      301 tgtggctctt tattaaaacg tgccacttct tcagggtcgg ctgtgccgtc tgcgatttta
      361 gattttaggt tatcgcaagg ttcttcgcag tcgcacattt ttttcatacc taaagcggtg
      421 ataccgccac agcttccttt gatggttttg cctttcacga taaaaccaat cgacatcgca
      481 aaaattacgg ctacaaaaaa gccaaaggtt aataatacag tttccatttt tcactccaac
      541 tattgtgatt gaataagttt gctaaattcg ctcgacattt gtgtctcaaa tttatcgccg
      601 tttttaacaa ttaaaaaaat agctaatttt tcacgctctg ccactgctaa tgctttttcc
      661 gctcctaaaa caaataaacc ggttgataag ccgtctgccg tcattgtagt tggggcaaat
      721 acggtgatag aggctaaatt atggtttacc ggacgtaact gttttgggtc gataatatgt
      781 gaaagacggt tgcctttttc atcttcaaaa taattacgat aattgcccga agttgccatc
      841 gccaaattgt gcaacggcac ggtaatttgt gcggcttgac cttgtgtcat taccggctgc
      901 tcgattgcaa tccgccaatc taagccttgt aaattttttc ctttgcctcg taattcgcca
      961 ccaatttcaa ctaaatagtt gctcacacct atagtttcaa gatgctcggc taatttatct
     1021 acaccgaaac cctttgcaat agacgataaa tctagataaa gattagctgc tgacttggtg
     1081 agcttgggtt tactactcat ttcaagcaaa attttatcaa tgccgacata agcagaacgc
     1141 tctgcaattt gttcatcaga cggcacttta tttaagcgtt tatccggccc gaagccccac
     1201 aagttcacca atggaccaac ggttacatct aaagcccctt cggttacttt atttaaacgg
     1261 attgcctctt gtaccacttt tgcaaaatcc tgcgaaattt cgaccgcttg atttgcctgc
     1321 tttgcttgat taaaacggct aatttccgaa tcttgttggt aggtggacat ctgattattc
     1381 acctcaatca ataagccatc cagctcattt ttcatttttt caggcgaaat caaattctcc
     1441 acttcaccat tatcaatata ttttacggtg taagtcgttc ccatggtttt gcctgacagc
     1501 gtaatttgct caggggcttt ttcacaagca cttaaagtaa aaaaagcaat taaaagaaga
     1561 aaaaattttt tcattggtgt cacaaaagtt aaaaattggg gaaattatag catatttagc
     1621 gattaaataa gcacttcata tcgctgtaaa ataatttgtt taaacgattc gttgcaactt
     1681 gcccagtcaa tcagatctac tgtgaaaggt aggtcagaat ccgtaaacgc aagctctaac
     1741 tctgtttgtt gccgaattgt gagcggttgt ttggtgatta atgctaaatc aagatccgaa
     1801 taagctttgg ctgtgccttt aatgcgagag ccaaaaaccc aaacgggtgt atcaggcaag
     1861 tattttttga aaatatccaa cacctgttgg cgttgtgact cagttaaatc aatcatagct
     1921 attgcgtttt tggagctgtt taactaaaaa atacgtactt tccagaaagt ttgaaattcc
     1981 gttataaacc tgctgtgctt tattttgatc ataagtatgc gaagtaatat ttcgcatttt
     2041 gcgataatcc agccaaactt ccggtgattc aatcagccca tattgagcag ccattcgcaa
     2101 aatatcacgg aactcggtgc tatcaatatc agtgtcattt gactcaatgt ttttgagctg
     2161 acgcttgagc atttttatcg acaattcgta aacaaattca aatttttgga ttgctcctgc
     2221 aatcaaagtg tcttgaataa ttgcttcttg ccggttaaac cacgcttgat tctcaaggct
     2281 gacaatcgtt ttctcaaggg aattgaaggc attttcaagt gccgtaatat ccagttgttc
     2341 catttgcttc cccttaaaat tcacattatt aaattaccaa aacttaataa tataaattaa
     2401 atcaagcggt caattttgca aatttgaccg cttgtagtca gaagttaagg tttatcaacc
     2461 accaaagtca tctaataaga tgttttcgtc ttctacgcct aaactcttca gcataccgat
     2521 taccgcagca ttcatcaccg gtggaccaca catatagtat tcgcagtctt caggtgcttc
     2581 gtggtttttg aggtagttct cataaagcac gttatgaata aagccacgga agtaatcttc
     2641 tctgtcgccc ggtaatggat cagaaagtgc cacataccat ttgaagttat cgttttctgc
     2701 ttgaagacca tcaaaatctt ccacatagaa catttcacgc tcagaacgag caccatacca
     2761 gaatgacatt ttacgtttag attttaaacg ttttaattgg tcgaagatat gtgaacgcat
     2821 tggtgccata cctgcaccac caccgataaa gaccatttcc gcatcggtat ctttagcgaa
     2881 gaactcaccg aatggacctg aaattgttac tttatcaccc ggttttaatg accaaatgta
     2941 ggaagacatt tgacccggcg gtacgtccgg attgcgtggt ggaggtgtag caatacgcac
     3001 gttaagcata ataatgcctt tctcttccgg atatgaagcc attgagtatg cacgaataat
     3061 atgctcgtcc acttttgaag tataacgcca taagtcaaat ttatcccagt cttcgtggta
     3121 ctcttttgga atatcgaagt ctttataatg aacggtatga ggttcagctt caatttggat
     3181 ataaccaccc gcacggaacg gtacttcttc gccttcagga atttgaagtt taagctcttt
     3241 gatgaaggtt gctttgttat cgtttgagat aacggtacat tcccattttt tcacaccaaa
     3301 gatctcttcc ggaagttcaa cgtccattga agatttcacg tttacctgac aagctaaacg
     3361 ccagccttct ttcgcttctt tcttagaaat gtgcgataac tcagttggaa gaatttcacc
     3421 accgcctgat ttcacttgta ctttacattg accgcaagag ccaccgcccc cacaagctga
     3481 cgaaacgaaa atccctttac ttgctaaagc accgagtaat tttccaccag ccggtagcgt
     3541 aatgcctttt tccggatcgt tgttgattga gatggtaata tcacctgaat caactaattt
     3601 tgatttagcg aaaagaatga tcaccgcaag cactaatacc agagccgtaa atgcgataat
     3661 accgaaaata aaattactat ccacgatatg ctccttataa ttgaatgcct gagaatgaca
     3721 taaagcctaa cgccattaag cctaccgtaa taaaggtaat acctaaacca cgtaagcctg
     3781 ccggcacgtc ggaatatttc attttctcgg ttaaacctgc aagggcaacg atggctaaca
     3841 tccagcctgt acctgcacct acgccataaa ccacagattc tacaaagtta tactcacgtt
     3901 gtaccataaa cgatacacca ccaaaaatcg cacagtttac ggtgataagt ggtaagaaga
     3961 tacctaatgc actataaagt gccgggaaaa acttgtctaa aatcatttcc agaatttgaa
     4021 caagtgccgc aataaccccg atgaaagtga taaagtttaa gaagcttaaa tccacacctt
     4081 ctactaatgc accctctttt aatacgtggg tataaactaa ttggttagct ggaactgcaa
     4141 tgccaagcac tacaattacc gcaataccta aaccaaaagc agttgaaact ttcttagaca
     4201 ccgcaaggaa tgtacacata ccaaggaaga aagaaagtgc catattttca ataaatacgg
     4261 acttaacaaa gatactcaga agatgttcca tcttatttct ccacttgttc cggtttccac
     4321 gttctaatcg cccagatcac aaatccgata ataaagaacg cacttggtgc taataagaat
     4381 aaaccgtttg cttgatacca accgccattt tgaacagttt caagaatggt gataccgaaa
     4441 attttacctg aaccgataag ttcacgtaaa aaggcaacga taattaacat tgcaccgtag
     4501 cctaaaccgt taccgatacc atcaacaaaa ctttcaaccg ggcctgattt catcgcgaat
     4561 gcttctgcac gccccattac gatacagttg gtaataataa ggcctacgaa taccgataat
     4621 tgttttgaca gatcgtaagc ataagcgcgt aagatttggt caaccaaaat tactaatgat
     4681 gcaataatcg ccatttgcac aatgatacgg atactatttg gaatatagtt acgaatcatt
     4741 gaaatgaaca tacttgagaa tgcagtaact aaacttaccg caatcgccat tactactgct
     4801 gtttgtaatt gagtcgttac cgctaacgca gaacaaatac ctaagatctg taatgcgatc
     4861 gggttgttat cgacaattgg cgataacaat aattttttaa gattgttatt gtctgccatt
     4921 agttagctcc tgccgctgct ttaaattttg ctaaatatgg accaaaacca ttttgaccaa
     4981 accagtattt gaatgaacca tcaacaccgt tcgaggttaa tgttgcacca gataaaccat
     5041 caacaccgtg atctttatct gcagatgccc ctttacccac tcttaacgca acttggtttt
     5101 gctcgttata cagtttttta cctacaaagt ttttctgcca gttcgggttt acaatttcgc
     5161 cacctaagcc tgccgtttca ccttgttcat agtaagtaat accgttaacg gtatttgcat
     5221 caggttgtac cgcaacgaaa ccgtacataa ttgaccataa gccgttaccg tgcattggta
     5281 atactacttg agtcgttttg ccagattcat cttttactaa ataaacttca gcatatttag
     5341 cacgcgtttt gatattcgcc ttatcatctt caggtgcgat aactacattt tgagcaggat
     5401 ctttagctgc tgcacgagca tcaaaaccgg ttacaccctc aacgtaatca cctgttgcta
     5461 aatcgacaat tttcggctca ataaatttgg tataggtttc ttgcacattg gtatcttttt
     5521 gcaataaacc ggccgcttgt aagatgtttt tctgtttatc aagttgtttc tgaatatctt
     5581 gtgttggttt aagcattact gccgcacctg ccacaatcaa agaacaaatt aaacttaata
     5641 aaactacaac ggttagcgtt ccgccaacgc tatctttatt aaatttagcc attgtttgct
     5701 accctcgcta atctgcgttt gatattccct tgaactacta aatagtcaaa gattggagca
     5761 aataagttag caaataagat cgctaacatc ataccttcag ggtatgctgg gtttaccaca
     5821 cggattaata cacacataaa gccgattaag ataccgtatg cccatttacc tttgttggta
     5881 aatgcagctg ataccgggtc ggttgccata aagaacatac cgatcgcaaa accgcctaat
     5941 actaaatgcc aatgccaagg catagagaat aatgggttgg tatcagaacc gattacatta
     6001 aataatgtcg cagttgccgc cataccaatc attacgccgg caataattcg ccaagaagca
     6061 attcgggcaa atacaatgat tgcagcacca ataatcaaca ttaaggtaga ggtctcgccg
     6121 atagaacccg gaatattacc taagaacgca tccatccaag taatggtttc accggttgca
     6181 acgtgctgta atgcaccttg accaccaact gcccattgag aaagtgcagt tgcacctgag
     6241 aagccgtctg cggcaaccca tactgcatca cctgaaattt gacccgggta agcaaagaac
     6301 aagaaagcac gaccggctaa cgcagggttc ataaagtttt tacccacgcc accgaacact
     6361 tcttttgcga ccacaacacc aaaggtagtt gcaagggctg cttgccataa cggtaatgtt
     6421 ggaggaacaa ttaatgctag taagatagag gttacaaaga aaccttcgtt gatctcgtgc
     6481 ttacgcacca ttgcaaacac cacttcccag aaaccaccca ctgcaaatac tgttaagtag
     6541 attggtagga aataggttgc ccccagcaac attttagttc cccagcctgc atcagctaca
     6601 gagcctaaac tatcggctaa gctgtagtgc cagttgttag caactaaatc cgttaatgtt
     6661 cccattttga gtgccgctag aataccctgt gcaccaacat tgtacattcc gtagaacatc
     6721 gcagggaata acgctaacca tacaattaac atcatacgct tagagtcaat cgcatcacgc
     6781 acgtgagcat ctttacgagt gaccgtaccc ggtgtataga aaatcgtata ggcagcttca
     6841 aatagcgtgt accatttctc atactttcca cctttatgga aagcgggttc cattttttca
     6901 aaaagatttt tcaaacccat ttttaaccgt ccttctcgat cttatctaac gcttgacgta
     6961 ataatggtcc ccagttgttt ttaccggaac acacaaaagt acataacgct aaatcttctt
     7021 cgtctaactc taagcagcct aaagcttgag cggagtctgt atctccagct gctaaatcac
     7081 gcaataagag tgttggaatg atatccaacg gcattacacg ctcataagcc cctgttggta
     7141 ccattgcacg ctcactaccg tgaactgctg ttgtgaagtt aaataatttc ttcgcaaaat
     7201 gccctaaagt agtacgcgta attgaatact tatcagagta aggagcaatc ataccgaaga
     7261 acgctttctc acgcccttct aataaagcag acacttgtaa tgcgtaacga cctaaatagt
     7321 cgtgtactcc cgttgcgata gcaccactta acacagaacc tgaaatgaca cggttttcac
     7381 ccgcatttaa ttcgttggct gttaattgtg aaagattcgc ccctaaacga gtacgcacca
     7441 aacgtggatt tttcacttgt ggcccggcta atgcgactac acggtcagta aatagctcac
     7501 cggtcgtaaa taatttaccg atagcaatta catcttggta atttaaatac caaacttgtt
     7561 tagttgcacc taccgggtca ataaagtgaa tatgcgtacc agaaagacct gcagggtgcg
     7621 gacctttaaa gcggttagtt tccacattat tgatctgacg gctttgtgcc gcatttaaaa
     7681 tatttgagtc tgcactgcca cagagatgaa tcactttttt actttcaaat aaacgactta
     7741 atacagttaa gccatcaaag aaagcttgtt ggtgttctgc aataatcact tccggatttg
     7801 ctgcaagtgg attggtatcc atcgcattga caaaaataga ggaaggttct gcatctaatg
     7861 caggcacttt gctaaacgga cgtgtacgga aagccgtcca taagcctgac tctacaaggt
     7921 tttgttttac ttgctctgaa gttaatgaag ctaattggct ggcttcataa cgagcaaagg
     7981 taatttgctc atcaccctca actttaatta ctaccgattg aagaacacgc ttctcgccac
     8041 ggttaattgc cgttacggta ccacttgcag gggcagtaaa taccacgccc ggattctttt
     8101 tatcttcaaa aagaacctga cctttcttta ctacatcgcc ttcacgcact ttcattgaag
     8161 gacgcatacc cacatattct tcaccaagca tagcaacttc agtaacggta ttaccgttat
     8221 ggattacttg ctcaggtttt cccgcaatcg gaagatctaa gccttttttg attgtaatca
     8281 tattgtttgc actacttttc ttttgggtta aaaaatatga ttgcgctaac gcaatcgctt
     8341 ctattgagcc gcagctttac ttaaaaataa acaatggtcc cccacctatt tttaaaagcc
     8401 acattaagtt ctcaaatctg tgatcaacct ttatcttttc ttaacaaaag gttaactaaa
     8461 aataatcttc ttattttacc taaaaagctc cccttctggc taggaaaccc ccctattttt
     8521 tgcatattcc cgcggtaaaa tttgaaataa atcaagattt caattccctc ttaacataaa
     8581 ttaaccataa ttagt
//
LOCUS       DANLUT010000109         8538 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLUT010000109 DANLUT010000000
VERSION     DANLUT010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8538
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            164..697
                     /gene="proQ"
                     /locus_tag="PXB38_001822"
     CDS             164..697
                     /gene="proQ"
                     /locus_tag="PXB38_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL5354112.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNLP
                     KASEEKLAALADKFGRK"
     gene            783..2795
                     /gene="prc"
                     /locus_tag="PXB38_001823"
     CDS             783..2795
                     /gene="prc"
                     /locus_tag="PXB38_001823"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL5354113.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKVFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWLEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            2931..4418
                     /locus_tag="PXB38_001824"
     CDS             2931..4418
                     /locus_tag="PXB38_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL5354114.1"
                     /translation="MALAETATVAQVASEPVVQDNILPQLSFAAQQARAAELVKQADY
                     ALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWNDKAAEKA
                     FLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVFKNANNW
                     LYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTNLVPRNHLYRDTAQRVLAMAGGSS
                     APKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLYYFRDGN
                     LALQSKVIVGREDRRTPVMDSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRAS
                     FEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHD
                     TPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTTSAQIRS
                     DNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            4588..5142
                     /locus_tag="PXB38_001825"
     CDS             4588..5142
                     /locus_tag="PXB38_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL5354115.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            5159..5788
                     /locus_tag="PXB38_001826"
     CDS             5159..5788
                     /locus_tag="PXB38_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5354116.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(5823..6194)
                     /locus_tag="PXB38_001827"
     CDS             complement(5823..6194)
                     /locus_tag="PXB38_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL5354117.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(6197..6556)
                     /locus_tag="PXB38_001828"
     CDS             complement(6197..6556)
                     /locus_tag="PXB38_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL5354118.1"
                     /translation="MTTEYQETIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            complement(6569..7168)
                     /gene="rnhB"
                     /locus_tag="PXB38_001829"
     CDS             complement(6569..7168)
                     /gene="rnhB"
                     /locus_tag="PXB38_001829"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL5354119.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            complement(7165..8202)
                     /gene="rsgA"
                     /locus_tag="PXB38_001830"
     CDS             complement(7165..8202)
                     /gene="rsgA"
                     /locus_tag="PXB38_001830"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL5354120.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQAVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
BASE COUNT         2652 a         1508 c         1829 g         2549 t
ORIGIN      
        1 aaatcatttt tatactttta tgaacattca aatgaaaaaa gagtctatct cttttgtaaa
       61 cgtaatgtgg aatttatatg gacgaagcct tataaatcaa atatagtatc cagttagatt
      121 ttcacttatc taattattag atttttatta aatgggactt attatgtcag agcaaattga
      181 gcaaaaagta gaacaaactc agaataaaac caatccaagt accaaggaag tgattgctta
      241 tttagcggag aaatttccgc tttgtttcac gcttgaaggt gaagtaaaac cattgaaagt
      301 tgggttgttt caggaattag ctgaagcatt aaaagatgat gagaaaatca gtaaaacgtt
      361 attgcgccaa gtattgcgga attacactaa ttcttggcgt tacttggctg ccagccaagc
      421 taatgttgct cgtgtcggct tacagggtga agaagttggc gtggtaacag aagacgaagc
      481 tactcacgcc gcagaagctt tggctgctgc gaaagtggtt gcagaacgta aagcacaaga
      541 gcgtaaagca caacgtaaag agtacttcaa acagaaagca cgtgaagaaa atgcgaaaaa
      601 gcgtgcagaa tttaaggcga aaaaagcaat agataattta cctaaagctt cagaagaaaa
      661 attagctgca ttagcagata aattcggtcg taaatagttt tcaagtcgct ttgtgcttac
      721 aagcggtcgg attttagtaa aattttgcaa aaaaatgacc gcttgattat ttggaaaaga
      781 agatgaaatt aacaagatta aataaaattt ttgccctagc cctaggttta atgataggaa
      841 acgcttttgc cgttcagccg gacattaaag aaagtgcgat tgtgatgcca aaacctaatg
      901 agcagcatag cttatcaacc aagcgtgtaa cagcccgatt aactcaatcg cattatcata
      961 aatttcaact gaatgatgag tttgcaggga aggtttttaa ccgctatgtc gattggcttg
     1021 atccttctca taatactttt cttcaagccg atattgatga aatgcgtagt aaatatgcta
     1081 caacattaga tgatgattta tatgctggta aattagatgc agcatttgca atgtatgagt
     1141 taatgtctaa acgtcgttat gagcgttata gctatgcctt atctttacta gataaagagc
     1201 ctgacttaaa agggaatgat gaaattgaga ttgaccgtga gaaggccgca tttccaaaaa
     1261 gtgtagaaga ggcaaataca ctttgggagc agcgagttaa aaacgatatt atcaatttat
     1321 atcttaaaga taaaaaatgg cttgaaatta agaaaacact cactaaacgt tataactttg
     1381 cgattaagcg tttaactcaa gttaaggctg atgatatttt acaaacttac ttaaattcat
     1441 tctctcgtga gatcgatccc cacactagct atttgtctcc tcgtgcggca aaagcgttcc
     1501 aagagagcat gaatctgtcg ctagaaggaa ttggtgcaac gctaacccaa gaagatgatg
     1561 taaccagcat tagagcatta gtgccaggag cccctgccgc taaaagtaag aagctggtag
     1621 tcggcgataa aattgtcggt gtaggtcaag gtgagagagg tgagattgaa gatgttatcg
     1681 gttggcgttt ggataatgta gtcgataaaa tcaaaggtaa aaaaggcact aaagttcgtt
     1741 tagaaattga gcctgaaaaa ggtggaaaaa ctaaaattat tacccttgtg cgtgataaag
     1801 ttcgtattga ggatagtgct gctaaattaa cggtagaaaa agtagatgga aaaaatgtag
     1861 gggtaattaa gatccctact ttttatatcg gtttgacttc agatgtacgt aaattactta
     1921 ctcaaataga gaaaaaaaat gttgaaggat tgatcattga tttacgtgaa aacggtggtg
     1981 gttcgttaac tgaagtgatt gaattaactg gtttatttat taaagatggg cctgtagtgc
     2041 aagtacaaga cgcattcaat cgtatcaaag tacacgaaga tccagaatca aaatcagttt
     2101 atgatggaaa agtgatggtg atgattaatc gccatagtgc ttcagcctct gaaatcttcg
     2161 ctgcggcaat gcaagattac aaccgtgcaa ttattgtagg gcaacaaacc tttggtaagg
     2221 gaactgttca acagagccgt tcattgaatt ttgtatatga tttggatcaa gagcctcttg
     2281 gttttatcca atatacgatt caaaaattct accgtatcaa tggtggaagt acccagctaa
     2341 aaggggttga ggcggatatt aaattcccgg aaatcattaa tgctgcaaaa acaggtgaaa
     2401 gttttgaaga taatgcgctt ccttgggata aaattccagc agctaattat aaagaggctg
     2461 ggaatgctcg taacgcggtt gctgcattaa cagcgaaaca tcaagagcgt attgctaaaa
     2521 acccagagtt tatagtatta aacgagaata ttgcgattcg aaaagaacgt gatgagcgta
     2581 agtttttatc gttaaattta gaagaacgcc tgaaagaaaa taaagcagat gaaagcaagc
     2641 gcttaaaaga tattaatgct cgttttgccc gtgaaggcaa aaaagcatta aaagatattg
     2701 atgatttacc aaaagactat gaagcaccgg actttttctt aaaagaagct gaacagatga
     2761 tgcttgattg gtcagaattt gataaaaaat cataaatgtg tttataatgc gcacataacg
     2821 taccgcttag ctctgctaag cggtttattt ttttataaat ttgcaaatat taagaggaag
     2881 agtgggtgaa aacctttaaa ttattaccta ttatggtggc gttttctggc atggctttgg
     2941 ctgaaacagc cacagttgct caggtggctt ctgagcctgt tgtacaagat aatattttac
     3001 cacaattaag ttttgcagct cagcaggctc gtgctgcaga attggtaaaa caggccgatt
     3061 atgcgttaga acaggaacaa attcgtcaag agcaagcaag aaaatttgca gaagcggaag
     3121 caagaattaa gcaagaaata ggtaataatg ccttattgct gagccaagca acaactaagg
     3181 tttatttaga cagtgaattt gcgacaatgt ggaatgataa agccgcagaa aaagcatttt
     3241 tgaaagaata tgcattattt gcagtaagtg gggtatcctc taaatcagct aaggcattgc
     3301 agcaaatctt aaatcaaccg gaaggtttag gtagagatat tttattaact gatggcttct
     3361 tagattattt gtattacaac aaaaatgtgt ttaaaaatgc aaataattgg ttatataact
     3421 taggcagtta tgtaccaaaa tcgccctctt cagagcaaat cttccaatgg actaatgccg
     3481 tgagggaagg cgattctggg cagtttgtaa caaaccttgt tccaagaaac catttatatc
     3541 gtgatacggc acagagagta ttggcaatgg caggaggctc ttcagcacct aaagccaaaa
     3601 aaggtaaagc tgttacggag gtagctggtg gcggtaatgg ggcttctttc tataaattag
     3661 cgctcaatgc tcaacgttta cgtattattc caagttttaa caatggaatt tttgtgaata
     3721 tcccaagcta tcaattatat tatttccgtg atggtaattt agctcttcaa tctaaagtga
     3781 ttgttgggcg agaagatcgc cgtacaccgg taatggatag taagctgagc aatgtggtag
     3841 tgaatccacc ttggaatgtg ccgactagta ttatgactaa agatattatt cctaaactag
     3901 cgcgtgaccc aggttatgca gatcgtgcta gtttcgaaat tcttgatagt agtggcaata
     3961 aaattaatcc gcgtagcgta aattggtcac aatatttaaa tgctaaaagt tcaccatacc
     4021 gtattcgcca gaaagcaggt gatgatagcg ctttaggacg ttataaattt aatatgccaa
     4081 gttcggatgc aatttatttg catgatacgc caaatagagg attatttggt aaaacggggc
     4141 gtgcgttaag ttctggttgt gtccgtgtag aaaaatctga tgaattggca accattttat
     4201 taaaagaagc gggttgggga tctgataaaa agaatcaagt cttaggcagt aagaagacga
     4261 cctcggctca gattcgttca gataacccgg tttatctcta ttatgtgacg gcttgggttg
     4321 aaggtggaaa agtgcaaacc cttccggaca tttataactt tgatgccaaa atcccacaac
     4381 attctgtgaa ttggggaaaa ttaaagagca ttatttaatc gtgctatttc tgataaattc
     4441 caagaagata tcatcttctt ggaacttttt gaaaatatag cttacataaa tttacgattg
     4501 taaattttta ctttaagtat ggtgtataga aattcgctca tttgtgagtg attttctata
     4561 aatcattagc taacctatga ggaaaaaatg aaacaaatta atgttcaacg ccgtaagtgg
     4621 ctatcactcg gcggacttgt tttaggggct agccttctgc cgggtcaagt aatggcagcg
     4681 ctttctactc ctgccccagc tgcgttacgt tttcgtaatg tgaatacagg cgatacttac
     4741 actgctaaat ttggtgcagg tggattaaat aaaaccgatt taagccagtt aaactattta
     4801 atgcgggatc gtcatatcaa tcaagttaaa gcaattgatc caaaattatt tgtcaaattg
     4861 aatcaattac aacgccgttt aggtttccat aatgcggaaa tcctagtatt aagtggctat
     4921 cgctccgcac aaacaaatgc aagacttcgt cgtagaagcc gtggtgttgc cagccatagt
     4981 taccatattc ttgggcaagc agtagatttc caagtatcag gtgtgccgtt atataaagta
     5041 aaacaagcgg ctgagagctt gaataatggt ggcgtaggtt attatcctcg tagtaacttt
     5101 gttcacgtag atactggccc agttcgcact tggagaggct aacaagcggt cttattttat
     5161 gtttaatttg caaattattc ctgttagtcc atttcaacaa aattgcacgg tgatttggga
     5221 cgaaaataag aatgcggcta ttattgatgg cggcgataat gccgaaggca ttattcaatt
     5281 tgttgaatct cagcagctta aggttcagaa attattgatt acgcacggtc atttagatca
     5341 tattatggcg gtggaaaagt tgagagagca ttttcaagta gaggttttcg gctcgcatct
     5401 tgcagataaa cctttatttg aacgtttgcc ggaaatgtgc caacaatttg gattaccacc
     5461 agtaaatggc tttttgccgg atcattggtt ggaggaaggt gatcgggtcg aagtcggcga
     5521 gctgagctat accgttcgac atttgccggg tcatgctccg ggtcatatcg gtttttttga
     5581 ttttgacaat cgtattgctt ttagtggcga tgttttattc caaaatagca taggtcgaac
     5641 agatctctat ttaggcaacc atagccagtt attggaaacg atcagggaaa aaatgtttga
     5701 tttagatgat gatttcatca tcataccggg acatggtcca cacacaacta tcgggcggga
     5761 aaaacagacc aacccgtttt tgaaataaat aaagaagcag agcagttggc tctgcttttt
     5821 tgctatttta cgcctcgtaa atagaggcgg taattatggc tttcttccgt cggtttaatg
     5881 agtgcaatgg tctgtttttg cttaggttgc aaccatagat gttgccagcc gatactatct
     5941 gatataccgt tatgggattg tgttacccca tctttattat accaaaataa tttataagta
     6001 agattaagcg gaaattcagt taaatttgtg gtgctaaatt gcttgctatt cgtttccagc
     6061 tctatctttt cagcaatgtc agactcaata ttgacaatag gctctgagcc ggttggtaaa
     6121 tagctgacag gtttgctacc acaagcggtc aaaaaaatcg aaaaaattgc aaatgcaaag
     6181 taggaaatac gcatagttat tttgccacta aaggtcctag tttttgtccg cctaacaagt
     6241 gcatatgaat atggaacact tcctgcccgc cgtttttatt acaattcatc actaagcgat
     6301 agccttcttc ggcaatgcct tcttcttggg ctaattttgc cgccaccgta aataaacgcc
     6361 ctagggctaa ttcatcttca ttactcacgt gattgacggt tggaataaat ttattcggaa
     6421 taatcaaaat atgcgtgggt gcttgtggag caatatcacg aaatgcggtc acaagttcat
     6481 cttgatagac aatatttgcc ggaatttctt tattgatgat tttggtgaaa atcgtttctt
     6541 ggtactctgt agtcattgtg ttttccttct aatcgattaa acctaatact tttcttacag
     6601 gggcaaaact cttacgatga taaggtgttg ccccaaattc tgctaatttt tcaaaatgga
     6661 gtttagtcgg gtagcctttg tgctgtgcga agccgtattg cggaaattgt tggtctaatt
     6721 cgtccatttc ttgatctcgg gcgactttgg caataatcga agcagcactg atttcagcca
     6781 ctaagctgtc tcctttcacc accgcttgtg ccggcattgg cagttttggc ggacgattgc
     6841 cgtcaattag cacaaaatcc ggctgaatat gcaagccggc aaccgcacgt tgcattgcca
     6901 acattgtcgc atttaaaata ttcagctcat caatttctgt cggctcggca cgtcctagcg
     6961 accagctcag agccttggct ttaatctctt ctgccaaagc ttggcgtttt ttctcggata
     7021 attttttgga atcggttaag ccctgaatcg ggttattcgg atctaaaatc acggctgcgg
     7081 tcacaaccgc tccgactaaa ggtcctcgtc cgacttcgtc aacaccggcg attaatcggg
     7141 cgttagggta aataaattca ttcattatac ttcttctttt ctgaaatggc gttggctttt
     7201 ggtttcagac aggctttcaa ttaagcgatg gtaattttca aaccgaattg cagaaatttc
     7261 gccattttcg accgcttgtc ttaaggcaca acccgggtcg gttttgtgtt tgcaatcacg
     7321 gaatttgcac gtgcctaaaa ccgattgaaa ttctcgatag cctaaggtga tttgctcagg
     7381 ttctaaatgc cataagccaa attctcgaat gcccggcgag tcaatcagct gtccgccttg
     7441 cggtaaatgg tataagcgag aggcagtggt ggtgtgctga cctaaccctg agttatcgct
     7501 cactgagcca gtgagagcat tgacttcagg taacagttgg ttaattaggc tggatttccc
     7561 cacgccggat tgtccgacaa aaatagacgt acctttagca agatattggt gtaacgcctg
     7621 catattttca cccgtatcag ccgataaaca tagggtttca tagccaatct cttcatagat
     7681 tttgagctgc tctttaactg cttgccgttc gctttcgttt aataaatcaa ttttgtttag
     7741 cacgattaag gcaggaatat tcgccgtttc gcaaatcact aaataacggt cgataatatt
     7801 cagcgaaagt gtaggtagca cagctgatac aataatgatt tgatcgatgt tcgatgccat
     7861 caccttaata ccgtcataat aatcggggcg ggtaagttca tttttacgtg ggaagacggc
     7921 ttcaatgacc ccactaatcc cttgtagttg ctcactacct ttacgccaag aaacctgatc
     7981 gcccaccact acatttttca atgtacggcg gatattacag cggaaaattt gcccctctgc
     8041 ggtttcaaca tcagcgtgtt taacgtggcg agtaacgacg atgccctgtt gcatttctcc
     8101 taacatttca tcttgccatt caatctcttt tttgttgata cgcttatgat ggttagattg
     8161 gattctacgc tgttggttat gggttaattt cggtttactc aaaagaactc tcggtaatta
     8221 ttgcaaatga aaaataggct ttagcatact ataaaacctc tttttataat agattaaagt
     8281 gaaagaataa aaaagcagaa aggctagaat aaaggtagcg aataatatag aatgcgatct
     8341 aggttttgtg ctgttttttt acatagaaaa aaaccgccca aagtgggcgg ttataaacca
     8401 atacggttca aaatatacag gaagtgaaac aagtaacttt cgttactcta gtctagtttc
     8461 ctagaccaat atgcaaacac aacatcatac ttaaaattta ggaatagaaa taaattctaa
     8521 actatccatc taagtatg
//
LOCUS       DANLUT010000110         8406 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLUT010000110 DANLUT010000000
VERSION     DANLUT010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8406
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..519
                     /locus_tag="PXB38_001831"
     CDS             <1..519
                     /locus_tag="PXB38_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354121.1"
                     /translation="IGIYMVLLFIYLRWWWYRQKDLSLTIEGMFIECLSLISCLLQPI
                     FVLSIGINSENNISFWEAIFLFWLTPLIILIITTYLIIFDNSKTINIALTLIIILLWI
                     CTVFNMTPLVMSFIGVKEKIDKNYIINKQYYMTGKILLNQGEKFIFLEKGKLYNESIV
                     IDKENIKLEDSN"
     gene            519..1007
                     /locus_tag="PXB38_001832"
     CDS             519..1007
                     /locus_tag="PXB38_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL5354122.1"
                     /translation="MNIKKHIFPLLLISNTAFAAPVELHQFDSPKQESDYRALIQELR
                     CPQCQNNNIADSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPA
                     TIMLWLLPLILIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKE
                     EK"
     gene            1004..1915
                     /gene="ccmI"
                     /locus_tag="PXB38_001833"
     CDS             1004..1915
                     /gene="ccmI"
                     /locus_tag="PXB38_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL5354123.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPRKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1912..2517
                     /gene="mog"
                     /locus_tag="PXB38_001834"
     CDS             1912..2517
                     /gene="mog"
                     /locus_tag="PXB38_001834"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL5354124.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            2527..2865
                     /gene="glnB"
                     /locus_tag="PXB38_001835"
     CDS             2527..2865
                     /gene="glnB"
                     /locus_tag="PXB38_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL5354125.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2946..3425
                     /gene="lspA"
                     /locus_tag="PXB38_001836"
     CDS             2946..3425
                     /gene="lspA"
                     /locus_tag="PXB38_001836"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL5354126.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            3436..4380
                     /gene="ispH"
                     /locus_tag="PXB38_001837"
                     /gene_synonym="lytB"
     CDS             3436..4380
                     /gene="ispH"
                     /locus_tag="PXB38_001837"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL5354127.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            4380..4628
                     /locus_tag="PXB38_001838"
     CDS             4380..4628
                     /locus_tag="PXB38_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL5354128.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            4808..5140
                     /locus_tag="PXB38_001839"
     CDS             4808..5140
                     /locus_tag="PXB38_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL5354129.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
     gene            5205..6296
                     /gene="trmA"
                     /locus_tag="PXB38_001840"
     CDS             5205..6296
                     /gene="trmA"
                     /locus_tag="PXB38_001840"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL5354130.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPATKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            6388..6477
                     /locus_tag="PXB38_001841"
     tRNA            6388..6477
                     /locus_tag="PXB38_001841"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6422..6424,aa:Ser,seq:tga)
     gene            6633..7004
                     /locus_tag="PXB38_001842"
     CDS             6633..7004
                     /locus_tag="PXB38_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL5354131.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(7001..7912)
                     /gene="xerC"
                     /locus_tag="PXB38_001843"
     CDS             complement(7001..7912)
                     /gene="xerC"
                     /locus_tag="PXB38_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL5354132.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(7979..8269)
                     /locus_tag="PXB38_001844"
     CDS             complement(7979..8269)
                     /locus_tag="PXB38_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL5354133.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
BASE COUNT         2581 a         1743 c         1742 g         2340 t
ORIGIN      
        1 ataggaatat acatggttct actattcatc tatttaagat ggtggtggta tagacaaaaa
       61 gatttatcct taacaattga ggggatgttt atagaatgcc tatctttaat tagttgtcta
      121 ttgcaaccta tatttgtact atctatagga attaatagtg aaaataacat ctctttttgg
      181 gaagctatct ttttattctg gcttactcct ttaattatac taatcataac tacatacctg
      241 atcatatttg acaattcaaa gacaatcaac atagccctta ccttaattat catcttacta
      301 tggatttgta ctgtttttaa catgacccct cttgtaatgt cttttatagg agtaaaagaa
      361 aaaattgata aaaattatat aattaataaa caatattata tgacaggtaa gattttatta
      421 aaccaaggag aaaaatttat tttcttagaa aaagggaaat tatataatga atcaatagtt
      481 atagataaag aaaacattaa actagaggac tctaattaat gaatataaaa aaacacattt
      541 tccctttact attaattagc aataccgcct ttgctgcccc tgttgagctt caccaattcg
      601 acagcccgaa acaagagtcg gactatcgtg ccttaattca agaactgcgt tgcccgcagt
      661 gtcaaaataa taatatcgcc gattccaatg cgactattgc caccgatatg cgggcaaaaa
      721 ccttagaatt gctcaaacaa ggcaaaagca aagacgaagt ggtggattat atgattgaac
      781 gctacggcaa tttcgtcact tacgacccgc ctctcacacc ggcaaccatt atgttatggc
      841 tgttgccgtt aattttaatt gccttagggc tgggggtggt gttgcgtaga aagaaaaaca
      901 aaccacaagc ggtcaatttt gagcaaaata ctgcaaaacc gaccactcat ctcgctcaag
      961 atgagcaaga acgtcttaac caaattctca ataaggaaga aaaatgaatt tctggctggc
     1021 aattattttc gttacactga ttgtatgtgg cgtggcgttt tatccgttac ttaaaaagaa
     1081 caagcaaatc gataacacca agcgagacag cttaaacaaa gccttctatt ttgaccgctt
     1141 aaaagaagtg gaaaacgaag cgaatgaagg ggtgattgat gaccctgaac aaaccaaatt
     1201 agagctacaa aaaaacttgc ttgatgatat tccacacagc acacaaagtg ccacaagtga
     1261 aaaattaacg ctcggcaagt cgtggtttgt ggcattgatt ttatttgtcg gcggtatcag
     1321 ctttgcgatt tacagcaatg tcggttcttg gttctccaac tcaatgttag acaccactca
     1381 ccaaaaatta gacagcttct atgagcgttt aaaaaccgaa gagaccaatc cgctctcaca
     1441 agaggaaatg aaccaatttg cgatggcatt acgggtagat ttacaaagta atccgaatga
     1501 cgacaaaaaa tggtatatgc tcggtcaaat cgggatggcg ttagatgatg gtcagcttgc
     1561 acacgatgcc tttagcaaag cggctcaact caagccggat aacttagatt acaaactcag
     1621 ccacgcccaa ctgctgctct tttccgaagc acaggaagac aaaaaacagg gtgaaacctt
     1681 gttaaaagag attatccgcc aagaccacac aaactttaat gcgttaagtt tattggcgtt
     1741 ccactccttt gaaaaagaag atttcaaaat ggcggcaatg acgtggggaa tgatgttaaa
     1801 actactgcct gatgaagatc ctcgcaaagt aacggtagaa cgcagtttta atatggcgtt
     1861 atccaattta agtgaggcgg aaaaacaaga attgcaaaaa ggtgagaaaa aatgaccgct
     1921 tgtaaaccac ttagcaaaga gaagttgaaa atcggcttgg tgtcggtttc agaccgagcc
     1981 tcgcaggggg tttattcaga ccaaggcatt cccgaattaa gggcgtggct tgaatctgcc
     2041 ttaaccgagc cgtttgagct ggaaacccgc ttaattcccg atgagcaagc cattattgag
     2101 caaaccttaa tcgagttagt cgatgctcac gcttgccatt tggtattaac caccggcggc
     2161 accggcccgg caaaacgtga tgtcacccca gatgccaccc ttgctgtcgc ccaccgagaa
     2221 atgcccggct ttggcgaaca gatgcgacaa gtgagccttc acttcgtgcc aaccgccatt
     2281 ctctctcgcc aagtgggagt aattcgccac gacagtctga ttttaaatct gccggggcaa
     2341 ccgaaagcaa ttaaagaaac gctggaaggt gtgaaagatg aacagggcaa agtattggtt
     2401 aaaggtattt ttagtgccgt gccatactgt ttacaacttt taagcgaaat ttatgtcgaa
     2461 acccacgcag ccatttgcga aagtttcaga cccaaatcgg caagacgaga aaattaaggc
     2521 taaaaaatga aaaaaataga agcaattatt aaacctttta aattagacga tgtgcgtgaa
     2581 gccttaaccg atgtgggtgt cagcggaatg agtattaccg aaatcaaagg gtttggcaga
     2641 caaaaaggac ataccgagct ttatcgtggg gcggaatatg cgattgattt tctaccgaaa
     2701 gtgaaagtcg aaatcgtgat tcccgacgag ttggaagaac agtgcattga agcaattatg
     2761 gaaaccgccc aaaccggcaa aatcggcgat ggcaagattt ttgtgtatga tgtcgggcgg
     2821 gtgatccgca ttcgtaccgg cgaagaaaat gaagaggcga tttagttttg caaaaaatcc
     2881 ggcaaaaacg accgcttgca gggggatttc catctactct ttttacatta aattttggat
     2941 attaaatgaa aacaggctta aaatttcttt gggtgagttt aattgtaatc atcattgacc
     3001 tttggtcaaa atacattgta gtgcaacatt ttgaatttgg tgaaagcatt aatattttgc
     3061 cgatttttaa cttcacttac gcccgaaact acggggctgc ctttagtttc cttgccgacc
     3121 attccggctg gcaaaaatat ttctttttag ggctggcggt agtgatttcc agtgctttag
     3181 tggtggctct ttggaagaat caagcggtca aaaaattaga aaatattgcg tatgccttaa
     3241 ttattggtgg agcgattggg aatgccattg accgtgctta caacggctat gtagttgatt
     3301 tccttcattt ttattgggat atttatcact accctgtgtt taatattgcc gatattgcga
     3361 tttgtgtggg tgcaggctta ctgattttag aagcctttat aaccaaaaaa gaaccgaaaa
     3421 aataagagtg attaaatgaa aattttatta gcaaacccac gcggtttttg tgccggcgtg
     3481 gatcgagcca tttcgattgt tgaattagcc ttagaaattc acggtgcacc tatctatgtt
     3541 cgccacgaag tggtacataa caaatttgtg gtggatggct tgaaagccaa aggggctatt
     3601 tttgttgagg agctacacga agtgccggac gatgctatcg tgatcttctc agcccacggg
     3661 gtgtcgcaag tagttcgcca agaagccaaa aatcgtggct taaaagtgtt tgatgccact
     3721 tgcccactcg tgaccaaagt gcatatgcag gttgcccgag ccagtaaaaa agggacaaaa
     3781 gcaattttaa tcggtcacga aggtcaccct gaagttatcg gtacaatggg acaatacaat
     3841 aaccaagaag gtggcattta tttggtagaa tcggtggaag atattgccaa cttgccggtt
     3901 tccaacaacg atgaattaac ttttatgacg caaaccacac tttccattga cgataccatt
     3961 ggcgtgattg aggcgttaaa agagaaatat ccggcaattc aaggccctcg caaaaatgat
     4021 atttgttatg ctaccaccaa tcgccaacac gcagtgcggg aactggcaga acaatcacaa
     4081 ttagtgttag tggtaggttc aaaaaactcc tcgaactcaa atcgtttggc ggaactcgcc
     4141 tctcgaatgg gtgtgatgtc aaaactgatt gatggtccgc aagatattga tccaacttgg
     4201 ttggagggta ttgaaactat cggtattacc gccggtgctt ccgctcctga agtgttggtg
     4261 caatcagtaa tttcgcattt aaaaaccctt ggcgtaaccg aagttgaaac cttagtcggc
     4321 aacgaagaag acgtggtgtt tgaagtcccg aaagagttac gcatcaaaga ggtaaaataa
     4381 tgacagaaat caaccgcttt aaattagaat gggcgtgccg acgtggtatg cgtgagttag
     4441 acaaaatgat tatgccgttt taccaaaatc attttaatga actcaatgaa acccaacagc
     4501 aagctttcgt tgaaatgctc aattacagcg acccggaact gtttcgctgg gtaatgctgc
     4561 aagcacctgc cccaaccgaa gaaatcgctg aattgattag gttaatgcga gataaaatcg
     4621 aaacatagcc ccaccgcttg caacttgcaa gcggtgattt tttgcataaa ctttgcatat
     4681 tgggcgttaa tgcaaaaaat tcgctaaatt tgaccgcttt tttacattaa ggcattgatt
     4741 tattcgctgt ttttgtttaa tgtatgccga ttttattttc cctaatttca aacaacgagg
     4801 cattattatg gcagacagtt tcagcgttac gcgccgcttt tttgacgata aaaattatcc
     4861 acgtggtttc tctcgccacg gcgattacac cattcgtgaa tcacaaactt tagaacaatt
     4921 cggtcaagct tgcttggctt tagaaagtgg tgaacgtaag ccggcaactc aagaagaaaa
     4981 acgtttcgtt gcggtaatga aaggcgaaga ggtagcagaa actgacattg aaaaagcgtg
     5041 gttaaaatac cgcacattaa ctagtaaaac aaaacgcatc tacacccttt caggcaatgc
     5101 aggtagcgat gccggcgatg acttcagtgc tgctgaataa tttctaattt aaaaccacga
     5161 agtaattcgt ggtttgtttt ttcatttgct atttgtggta aaaaatgact cttcctatcg
     5221 aacaatattc cgatcttctt gcaaaaaaaa ccgaaaattt gaccgcttta ctcaagccgt
     5281 ttaacccgcc tgcgattgag gtatttgcct caaagccaag ccatttccgt atgcgggcag
     5341 aatttcgagt gtggcacgag gaaggcgagc tgtaccacat tatgttcaac cctgcaacca
     5401 aagctcgtta tcgggtggat agcttcccta ttgccagtga gctgattaac catatgatga
     5461 ccgcattatt ggcggaaatt aaaggcaatg aactactgac tcgcaagctg ttccagatcg
     5521 attatttaag caccttaagc ggtgaaattg cagtctcaat gctttaccac aaaagcctga
     5581 atgaagaatg ggttgaacag gcaaacgcct taaaaagccg tttagagcaa caaggtttca
     5641 aagtgcaaat tatcgggcgt gccaataaac aaaaaatcgc actggattgc gattatgtgg
     5701 aagaaattct accggtacac ggcaaaaatt atgtgtatcg ccaagtggaa aacagcttta
     5761 cccagccgaa tgcggaaatg aatattaaaa tgctggaatg ggcgagaaat tgcacaaaaa
     5821 atagtgaagg cgatttgctt gagctttact gcggcaacgg caatttttcg attgccttgg
     5881 cggaaaactt ccgcaaagtg ctggcaaccg agatctcaaa atcttcagtg caatcggctc
     5941 aatacaatat tgaaaaaaat ggcattgtta acctacaaat tatccgaatg tcggcagaag
     6001 aatttaccca agcgatgaac ggtgtgcgag ccttttatcg cttaaaaggg attgatttaa
     6061 acgcctacga atgcaatacc atttttgttg atccacctcg tgcagggtta gatcaagcta
     6121 cattaaatat ggtgcaagcg tatgagcgga ttctctatat ctcttgcaat ccggaaaccc
     6181 ttgccgagaa tttacaacaa ttaagccaaa cccatcggat tgaaaaagcc gctctttttg
     6241 accaattccc ttacacccac catattgaaa gtggcgtttg gttaattaga aaataaattg
     6301 tgctgaaaaa aagaacgaat aagcagcttt taagatttat tacttgacga tgttcgcaat
     6361 aatctctatt attgcaacat tttcaacgga ggaatggcag agcggttgaa tgcaccggtc
     6421 ttgaaaaccg gcgagggtta acgccctccg tgagttcgaa tctcacttcc tccgccagtc
     6481 tttaaacctg ttgagcaatc agcaggtttt tttatttcat ttgcaagaaa atcagataaa
     6541 accaccgctt gaatccatcg ctataaactg gttgaaatca gcctaaagtt gctttaggat
     6601 aattgcgatt cattatcaat aacttaatta ttatgaaata cctttatatt atctgtggtt
     6661 ttatttgtat tggtttaggc atcatcgggg cagtattacc gggcttgccg accacaccgt
     6721 tcttactttt ggctctgttc tgctttacta aaggctcgga gagaatccgc cagtggttta
     6781 ttcaaaccaa attatacaaa aaatatctgc aagaatatga tgagaaacgg gcaatgacga
     6841 tgaagcaaaa aatcacgatt ttagcgattt cgtttccgtt tacactattt gctttctttg
     6901 cactgcccca tatcggtggg aaaattgcgt tagtagtgtt agtgataatt caatattggt
     6961 atttcttctg caaaatgaaa acccttgaac cggagaatgc ctaatcttcc tgcttccgcc
     7021 ttgctcttgg gtgggcagag tcataaattt tagctaagtg ttggaaatcc agatgcgtat
     7081 aaatttgagt ggtggacagg ctactatgac ccaataattc ctgaaccgct cgcaaatcac
     7141 cgcttgcctc taacatatga gtcgcaaaag agtgacgtaa tttatgtgga tgcagatggc
     7201 tttccagccc ttgtcgctca ccccatttct tcattgccaa ctgaatggaa cgatgagata
     7261 accgcccacc tcgcttattc agaaacaccg cattatcttg cggcttaaat tgcaaacgca
     7321 tttctaacca gcgatttaac gcttttaacg cttgcgagcc aatcggcaca attcgctctt
     7381 tgctaccctt accttgcacc cgtacttctc gtgccgataa atccatatcg cctaaatcca
     7441 gcccttgtaa ttccgataaa cgcaagccgg aactatacat cagctccatc atcgcaatat
     7501 ctcgaatatc gctcggctca tcactctcaa tcgccagcaa ctgcccgacc tgctccgcat
     7561 caatattttt cggcaaatgc ttacctactt tcggcgattt cacccctaaa gtcgggtttg
     7621 ccgacattcg cccgatttta atcaaataga caaaccattg ccgtaacgcc accaagcgta
     7681 agccgatact tttcgcactc aacccttgct tatggctttg gcttaacatc caacgcaccg
     7741 agctactttc gacctcttcc caattttcaa tgcctgcttg cgaaaaaagc tcgctcaccg
     7801 ccattaattg gcgttgataa ttgcttaagg tatgcgggct aacttgcttt tcaatgcgta
     7861 agaaatccca ataggggcgg gtttgttgga aaagagggtt ggaagtggtc ataaacgtaa
     7921 taacaagcgg ttaattttta ggaaaatgtt gcaagggcaa aagatttgcc ctttgagatt
     7981 aggctagccc caactgaccg atacgcacgc caacattacc aagtgcaaca gggcttaaat
     8041 attcgccgag aaattcaaac aattcattca catcagtaaa actgcgatga gttttcactt
     8101 cttgctccac tttacgagta aattcataat gtacattttc gccgttaata aaggcttcca
     8161 gcgttaaata tacggtttca aaatagtggc ttggcgagcc ttcaaagccc ggatcactca
     8221 ctcgaacatt ccaatgatta ctaaataaaa cttcggtttt tactgacatt gtgttttcct
     8281 tcttcctata agtacgtaca ttattttaat caagatagat tgaatttgcc acttttccta
     8341 gtcagaatcg aggcaaatct tatttggttt gtcctcttat atctttccct caaaatatga
     8401 tcttgg
//
LOCUS       DANLUT010000111         8371 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLUT010000111 DANLUT010000000
VERSION     DANLUT010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8371
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            175..1329
                     /locus_tag="PXB38_001845"
     CDS             175..1329
                     /locus_tag="PXB38_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL5354134.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTAPYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALKAFLKTLTDERYRK"
     gene            complement(1377..2366)
                     /locus_tag="PXB38_001846"
     CDS             complement(1377..2366)
                     /locus_tag="PXB38_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5354135.1"
                     /translation="MNDLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNIS
                     EHIKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRK
                     WANSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKL
                     SSDYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRK
                     GDIVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFS
                     VLGNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
     gene            complement(2526..3890)
                     /gene="mpl"
                     /locus_tag="PXB38_001847"
     CDS             complement(2526..3890)
                     /gene="mpl"
                     /locus_tag="PXB38_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL5354136.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTEHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(4186..4941)
                     /locus_tag="PXB38_001848"
     CDS             complement(4186..4941)
                     /locus_tag="PXB38_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL5354137.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            5096..5413
                     /gene="metJ"
                     /locus_tag="PXB38_001849"
     CDS             5096..5413
                     /gene="metJ"
                     /locus_tag="PXB38_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL5354138.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            5461..5691
                     /locus_tag="PXB38_001850"
     CDS             5461..5691
                     /locus_tag="PXB38_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL5354139.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            5684..7108
                     /gene="panF"
                     /locus_tag="PXB38_001851"
     CDS             5684..7108
                     /gene="panF"
                     /locus_tag="PXB38_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL5354140.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYAAGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(7185..>8371)
                     /gene="nhaA"
                     /locus_tag="PXB38_001852"
     CDS             complement(7185..>8371)
                     /gene="nhaA"
                     /locus_tag="PXB38_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL5354141.1"
                     /translation="KLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTIVS
                     VQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVGGM
                     IVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAIID
                     DLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSVLK
                     SGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLLEM
                     GMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLCGI
                     GFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPENNA
                     TY"
BASE COUNT         2460 a         1864 c         1637 g         2410 t
ORIGIN      
        1 cgaggaatct aaccgcttgt tataacgcaa aacaccttga cttaaatcaa gccactacct
       61 cattttgagg ggagatttat acgcagtgaa attttaaaat aagctaaggt ttacggataa
      121 tcgttcaaca ctattgaatt atcactgtag ttatcgttaa aaaggtatgc ttttatgaac
      181 caattcttcc ctctaatctt tagcttaact ctattttccg gcgtaacttt ggcactagaa
      241 aaagcacctc gaactatgcc gacagaagga ataaataagc ccctacttgg acaaattcta
      301 ttctttgaca atatgctgtc acacaacggt tcacaaaact gctccagctg ccataatccg
      361 gattatgcct ttattgataa ccgcactact ccggcaaaag gggtggtttc acaaggagat
      421 actccaacca aattcggcaa acgcaactcc ccgaccatgc tttatgcgaa atactcgcct
      481 gagttccact ttgatgagca aagtcaagaa tatatcggcg ggcagttctg ggacggacga
      541 gccaaaaatc tcgccgagca agccggtatg ccgcctatcg acccaaatga aatgggaatg
      601 cctaacaaat tagaagtagc caaaagatta tataatgtgc cgatgtatca gcgattttta
      661 gggcaatttt acggtgaaaa ggtatgggaa agttatgaaa gcgtttatgc ggcaatggaa
      721 gatgcgattg cgacattcca acaagaaaac aaacttctcg ctccatttga ttcaaaatat
      781 gatctatttt taaaaggcga ggtacaatta actgcattgg aagaaaaagg cagagcttta
      841 tttttcaata aagctcaaac taattgtagt agttgccacc aattacagag tgctgcaaac
      901 caccaagaag aaacctttag caactatcac tattacaatg taggcgtacc cggtaaccca
      961 gacttgatag cggttaacgg cttcgcacca gacttcgtcg atttaggctt atttgaaaac
     1021 ccaaatgtta aaggtgatga aacacaaaaa ggcaaattca aaaccccaac attgcgtaat
     1081 gttgccgtga ctgcacctta tatgcacaac ggtgtgttta aagaattaaa gactgttttg
     1141 ctatttttag acagctacaa taacccggag cgaaaaatca accctgaaac cggcacggcg
     1201 tggcaacaag cagaatttga acccactatc gcccaccaaa aactcaaagc caaaccctta
     1261 agcgatgaag aaattgatgc cctcaaagca tttttaaaaa ccttgacgga tgagcggtat
     1321 agaaaataag gctacaagcg gtaaaatttt ggggaaattt taccgcttgc gtttaactac
     1381 cgtgttagct cactttctaa cttttccaat gcctgcaaat cttcccaatc tgcctctttc
     1441 tgttttaaac atttacgctg aatatcaaat ttttcgtatt gctctctgac aaagctttcc
     1501 atttgtttat gcgtgattgt tccaccattt cctaatacag aaaagccgtt aaactcaatc
     1561 aacatatcta catttcttcg ccagaaacct aacgtaagat cttggttgtt cttcacacgt
     1621 aattcggcac tttcaagaaa gatcattacc aagcgattta aagaatccag ctcattatta
     1681 tctaaatagt ttttcgcaat cacaatatcg cctttacgca cgacttttcc tttccagcta
     1741 gttaatccca tattcatctt agtcgcatca gcacgttgac aaatcaactc agcggcagtg
     1801 tgtttggtta ttgcataaat gagcttattt tgcgtttctg caaaaaacat ttgcgtattt
     1861 ttatctgttt tgtcgtaatc gctagagagt ttgaaaagct ctcgtacttt ttgatagaaa
     1921 cgcaattcac ttgcccgaat ctcacgaatc tgttcaagta attcatcgaa ataatctaaa
     1981 cgaccctgcg gatttttcaa acgctcgcta tcaattaaaa aacctttttc gagataagtg
     2041 cgtaatgtgc tgtttgccca ttttctaaac tgtactgctc ttgggctacg aactcgaaac
     2101 cctatcgcca gaatcatttc aagtgaataa tgttttactt gataattctt gccatcttga
     2161 gcagttatca agtaatcctt gataactgaa ttctcatcta actctttgtc ttttaagata
     2221 tttttaatgt gttcggatat attttgcaca gaggtgtcaa aaagttctgc aagttgattt
     2281 tgtgtcagcc aagcttcatt ttcaaccact aacaaggcta cattgctttt gccgtcttcc
     2341 gtattataaa taattaaatc gttcatattt tattctgttt attggtagag atattagtcg
     2401 ctattttcaa taaaacatgt ataaatatcc agaattgatt ttgaattttt cgatgcagat
     2461 cacaaaaata gagagttata caaacaagcg gtaaaatttt gtaaaaaatt taccgcttgt
     2521 aaaggttact tatcagctaa tttggcaagt agtttttgat gaataccgcc aaaggctccg
     2581 ttgctcatca ctaagatgtg ctcggtgggt ttggcttctt tgacgactag atcgactaaa
     2641 tcatcaatat ttgccgacca atacgccggt tgcgataaca cattggtaat ctcgctcaca
     2701 ctccacgcaa taatatcagg ctggtaaaca aacactgctt cggcatcgtg taggcttggg
     2761 gctatttcat ctttatggac acccattttc attgtatttg aacgaggctc taacactgcc
     2821 aaaatgcgtt gatttttgcc gactttacca cgcagagcat caatggtcgc ttctatcgca
     2881 gttgggtggt gagcgaaatc atcataaacg gtaatgccgt ttacctcgcc tttcacttcc
     2941 aaacggcggt tagcattcac aaacttgcct aatgcctcgc aagccccttg cacttcaacc
     3001 cctgcgtgat gagcggcggc aatcgccatc agagcattat gcatattgtg cttgccgata
     3061 atcgaccaat gcacctcgcc ttgtttaacg cctaagtgaa acacctcaaa ctgtgagcaa
     3121 tcggcattta acggtttagc aaaccattcg ttctgttcgc caataaattg aagctggctg
     3181 taactgccca tttttagtgt atcttgcacg ttttgatcag cgattgccga caaaatacag
     3241 ccactttgtg gcatcgtgcg aacaaggtgg tggaactggc gttgaatcgc ttttaaatca
     3301 tcaaaaatat cggcgtggtc aaattccata ttattgataa tcagcgtttt cggggtgtaa
     3361 tgcacaaatt tagaacgctt atcaaagaac gcagaatcgt actcgtccgc ctcaatcacg
     3421 aagaatggac tgttaccggc acgagccgaa atgccgaaat taccggcaac accgccaatt
     3481 aaaaagccgg tatcaatccc attttggtct aaaatccacg ctaacattcc tgttgtggta
     3541 gttttgccgt gcgtgccgga aaccgccagc acccatttgt ctttaagcaa atgatcgtgc
     3601 aaccattgcg ggccggaggt gtaattgagt tggttgtcca acacatattc cacgcacgga
     3661 ttaccacggc tcatcgcatt accaatcacc actaaatcag gagccggttg cagttgagca
     3721 acatcgtaat tcgggataat ttcaataccg tgagcagcta aaaaggtact catcggtggg
     3781 taaacattag tgtctgagcc ggtcacttta tagccaagct cacgggcaat cattgccaca
     3841 ccgcccataa aggtgccgca aatgcctaaa atatggatat gttttttcat ctttttatat
     3901 ttaaaatgtt agaatcatcc cctctcccct tgtgggagag ggatagattt tttcttcgtg
     3961 cagaagaaaa aatcagggag aggggtaagc ggtcattttt aggcttaata ttgtaagctc
     4021 cctctctctg aaaaatattt ctgaacgaaa tatttttcgg tctcaatact cgctacgctc
     4081 gctcctgtgg agccgttggc aaagccaacg ttcaaatgta aacatttgtc ccacaagggg
     4141 agaggtgcgc tttagatgag gcgtaccatc cctcgttcac atcaattaat caatattctt
     4201 caactcttct tccgaaagct gctcttgttg gctttgctca acattgccat ctttcacttt
     4261 aaattcaagg ttttggaaat aagcttcacg gaaggtaaca taagggtctt gagcttgctc
     4321 taacaacgca tcttgttcta ataatttaga acgggtatct accccttgta ccacaaattt
     4381 agcgatagac caaggtgacc caacataagt cagcaccgaa taaccggttt ccaccgcact
     4441 accaatacct tgacgaggtg tggttgctcc ataagccggc atcataatat aggagccgga
     4501 aggcacgccg tgagcgccta aactctcacc taaaccacgt tgtccgttat ttaaacgtaa
     4561 cccctcatct aaactcgccc agtcaattaa cccacctaaa ccaaacacag tgttgatcca
     4621 gaagcggttg aagtgaacca tcgctttttt accttctcct tcaattaagc ggtttacaaa
     4681 gctcaccggc tcatcaaggt tattagcaac attaattaag cctgttttaa ccgggcttgg
     4741 tacatactct ttccaacctt tagctaccgg ttttaacaca taagggtcta aatagtcgta
     4801 attgactttc cacatcgcac ggttaaaccc ctcaagtggg tcgtctcgca cgccggtttc
     4861 tgggttaatg cttgatgaac aagcggttaa aaatgccaca ctgagtagca taaacatcgg
     4921 tttgaacgac ttgagtttca taaattgaac cttttgcaga gaaatttgtc cattgtagcg
     4981 aagttgataa aaaatacaaa acaaaaagcc gttttgcctc tagaaatcta gacgtctaga
     5041 ttgagatata gttcgctttt gattacaata caggcaacat ttaaggagca aacaaatggc
     5101 agactggaac ggcgaatata ttagccctta tgccgaacac ggcaaaaaaa gtgaacaagt
     5161 caaaaaagtg acggtatcca ttccaattaa agtattggaa attttaacta atgagcgaac
     5221 ccgtcgccaa atcaaaaatc ttcgtcacgc aaccaacagc gaattattgt gcgaggcttt
     5281 tttgcacgcc tttaccggtc agcctttgcc gaatgatgaa gacttgatga aagacagggc
     5341 agatgaaatc cctgaagcgg caaaacaaaa aatgtgtgag ctgggaatag acccggacga
     5401 atggcaatat tagacacacc ttgcaactgc gaggttcttt ttatgtttta aggagacttt
     5461 atgtatcaac aattaacaac agaagcacgt tgggctgtgt tgcttacgct gatttatctg
     5521 ctcggctggg taggttttgc ttacttttca ccgcaaggca gaggcatttt cggctttccg
     5581 atttggtttg aactttcttg cattttctta cccgtactat ttagcttagt tgccaccatt
     5641 gtcgtcaaaa aagtgtataa aaatatcgat cttgaggtga ataatgaata gtgaaatgat
     5701 tttacccctg attgcttatt taatttttgt gtttggcgta gcgttttatg cttaccgtaa
     5761 acgccaaggc ggaagcttta tttcggaata ctatatcggt gggcgttcaa tgtcgggctt
     5821 tgtgttagca atgacaaccg ccgccactta tgtgggggca agttccttta tcggtgggcc
     5881 gggtgctgcc tataaatacg gtttaggctg ggtgttactg gcaatgattc aagtgcccgc
     5941 agtgctactc tctcttggag cattaggcaa aaaatttgcc ttacttgccc gcaagcataa
     6001 tagtgtcacc attaacgata tgttattagc ccgttaccaa aacaaatttg tggtttggat
     6061 tgcaggacta gccttattac tttcgttttt tgcgatgatg acggtgcaat ttatcggtgc
     6121 cggtcgctta cttgaaacca cactcggaat cccttaccaa acagcggtaa tgatttttgc
     6181 catcacagtc gggctttata cctttatcgg cggttttaga gcggtggtgc taaccgatac
     6241 tattcaaggt ttagtaatga tagtcggcac aagcatttta ctcgctggtg tgatttatgc
     6301 cgcaggcgga gtggaaaatg caatgcacac ccttgaagcc attaacccac aacttaccac
     6361 cccttacggc attgacgaac gcccgcttga tttcaccttt atgacttcat tttgggtatt
     6421 ggtttgcttt ggtttaatcg gcttaccgca tattgcggtc agaagtatgg catgcaaaaa
     6481 cagccaagcc ttgcaccgag caatgattat cggcacggta gtcattgcaa ttctaatgtt
     6541 tggaatgcac ctttcaggcg tattaggcag agcggttgtg cctgatctca aagtgccgga
     6601 tcaagtcatt ccaacactaa tggtacaagt gctaccaccg gtggttgccg gtattttcct
     6661 tgccgcccca atggcagcga ttatgtcttc gattgactca atgttgattc agtcgtcttc
     6721 aaccttaatt aaagatctct atctggcaat taagccgaat gccattaata acgagaaaaa
     6781 aatcaaattg ttctccacta ttactactct tacttttacg gtattactcg tgtttgccgc
     6841 cctaaccccg cctgagatgt taatttggct gaacctactc tctttaggtg gtttagaagc
     6901 gactttccta tgggtaattg tactagggtt gtattgggaa aaggcaaatg ccaccggtgc
     6961 tatttactca atgctggcag gcttaagttg ttatgtatta atgactacct ttaagattgc
     7021 tatttttagc ttccacgcca ttgtgccttc actgctaatt ggtttgattg ctttcttaat
     7081 cggcaaccga tttgctccta aggtgtaaaa taaaataggc atagtggtat ggaagttcac
     7141 tatgcctatt ttgcaaaatt tccgctcaat tcaaccgctt gtagttaata agtggcatta
     7201 ttttctggat tattctgctt agtcgccatt ctaagtaacg tataacctaa aatcgctgaa
     7261 accgcagagc cgagtaaaat acctaatcga gctagagcgg taatactttc cccagcctca
     7321 cttacatcaa aggcaagact tgctaagaac atcgacattg taaaaccgat accgcatagc
     7381 accgcaatgg caaaaatttg cttaaaatta accccttgcg gcaggctggc aaggcggaat
     7441 aatactgcta aataactaaa accgaataca cctaaggttt tgccgataat taagccgagc
     7501 gcaataccta acggcaatgg tgatgagagt tgctccattc ccatttctaa taagtaaacg
     7561 ccggcattag cgaaggcgaa gatcggtaaa atcatataag cacaccaagg ggcaagaata
     7621 tgttctagct cctctgccgg tcgttcccca tgtttacctt tcagcggtac gcagaagccg
     7681 atgatcacgc cggcaagggt agcgtgaacc cctgatttta aaacggaagt ccatagcact
     7741 aagcctacta ccaaataagc acagagtgag gtcactttaa agcggttaag tagcactaag
     7801 ccgataatcg caatcgcggc aatagttaag gcttgcacac tgatttcttg cgaatagaaa
     7861 atggcgatta ccacaatcgc tcctagatca tcaataatcg ctaatgccaa caaaaatgcc
     7921 tttaaagcca atggcacacg agtgcctaat aacgccacaa tgcccaccgc aaaggcaata
     7981 tcagttgcca ttggaattgc ccaaccatta tgatattcag ggtggttttg attaatcgcc
     8041 caataaataa tcgctggaac aatcatacca cctactgctg ctatcgcagg aaaaatggct
     8101 ttcttataac ttgaaagcga accttcaaac aactcttttt ttacttccag ccccaccaac
     8161 gtaaaaaaca ctgccattaa gccatcgtta acccagagta atagcggttt attcaaggca
     8221 aattcaccaa actgtacact aacaatcgtt tgtaaaaact caaaatagaa atcacttaag
     8281 gaggtgttgg cgcacacaat tgctgcaaaa gcaaaaacca gaagcaatac gcctcctgag
     8341 gcttcagatt ttaaaaattc ttttaatttt t
//
LOCUS       DANLUT010000112         8309 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLUT010000112 DANLUT010000000
VERSION     DANLUT010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8309
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..547)
                     /locus_tag="PXB38_001853"
     CDS             complement(<1..547)
                     /locus_tag="PXB38_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL5354142.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKVSAETLNIQNNEVKALKDKTLEVLTLGSQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
     gene            complement(614..1198)
                     /locus_tag="PXB38_001854"
     CDS             complement(614..1198)
                     /locus_tag="PXB38_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL5354143.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            complement(1330..2514)
                     /locus_tag="PXB38_001855"
     CDS             complement(1330..2514)
                     /locus_tag="PXB38_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5354144.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            complement(2597..3460)
                     /gene="rapZ"
                     /locus_tag="PXB38_001856"
     CDS             complement(2597..3460)
                     /gene="rapZ"
                     /locus_tag="PXB38_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL5354145.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSVFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            complement(3473..3985)
                     /locus_tag="PXB38_001857"
     CDS             complement(3473..3985)
                     /locus_tag="PXB38_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5354146.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            complement(4027..4752)
                     /gene="lptB"
                     /locus_tag="PXB38_001858"
     CDS             complement(4027..4752)
                     /gene="lptB"
                     /locus_tag="PXB38_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL5354147.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            complement(4764..5270)
                     /gene="lptA"
                     /locus_tag="PXB38_001859"
     CDS             complement(4764..5270)
                     /gene="lptA"
                     /locus_tag="PXB38_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL5354148.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            complement(5294..5878)
                     /gene="lptC"
                     /locus_tag="PXB38_001860"
     CDS             complement(5294..5878)
                     /gene="lptC"
                     /locus_tag="PXB38_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL5354149.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            complement(6032..6835)
                     /gene="xthA"
                     /locus_tag="PXB38_001861"
     CDS             complement(6032..6835)
                     /gene="xthA"
                     /locus_tag="PXB38_001861"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL5354150.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            complement(6936..>8309)
                     /locus_tag="PXB38_001862"
     CDS             complement(6936..>8309)
                     /locus_tag="PXB38_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL5354151.1"
                     /translation="LSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEEA
                     GFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHSP
                     SGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVACA
                     LTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMIL
                     GLLFAFFVSYRKPRVYIEDKPEPTSDDIEARVANVKPFHIGISILAIIATCSVQLATN
                     STIIGGLVGLAIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGGV
                     PALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCVSFGFSPL
                     ATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNLPLLVFG
                     WIAAMTL"
BASE COUNT         2328 a         1657 c         1660 g         2664 t
ORIGIN      
        1 catatttagc tcttaatata ttttctaact gttgcccttc ttcagctaat tgattcaatt
       61 ttgtttgtaa ctcgccaaat gctttatgtg cttccggtgt aggatttttc tccattttag
      121 caccttctac gatcatctga gaccctaaag tcaggacttc taaggttttg tcttttagtg
      181 ctttgacttc attattttga atattcaggg tttcagcact taccttaata tgatcaattt
      241 gagctaataa tgcgttatta actgtctctt gcattaaggt agaatcggct ttttgtttgt
      301 cagtaagtgt ttctgttgcc gctttaattg catcatttaa ggctttttct tgagtgtctt
      361 gccattcccg taacatttta taatcttgag cgccggtatc agcaggttta acttcttctt
      421 ttgactcttc tttcacttga actggcgatt ctgctgagct ctgtgttttg gtagaattag
      481 gttgttcgca agcggttaaa aaaagggtaa ataatacaga taggctaatt ttagcgagcg
      541 tgttcatagt aatccttagt aattgcaaaa aaaagctaga gcaaaatact ctagcttttc
      601 attgaatggt aaattattta gctgagaatc tttgctgtaa ttctacgttt aatttttgta
      661 actcattacc agcttcaatt aaagactgag ctttttgttg tacggcttgt aatgctgctt
      721 ggtcatttgg tgtagagatc gtttttactt gttcagaaat cacttcactt gaaagtgtta
      781 aaactgattt tgttttttct ttaaatgttt tgatttgtgc atcagatact tcaatcgcat
      841 ctaagctttt tacagtttct tctacttttt tattaaatgc acttaatcct tcttgaattt
      901 gtttaggatc ttgtgtagct aatttctttt gtagttctgc ttgtgctgtt gccattgtgc
      961 tttcttgtgc cgtattccaa tcaactaatt tttggtaatc tgcttttgca gcttcgcttg
     1021 gagcggctac agctgtttca gcaggtttgg ctgcttctgc agcaggagct gttgtagttg
     1081 gtgcagcttc agttgttttt gtaggttctg tcgccggtgc tttttctgct ggtttatcac
     1141 aagctgctaa gaataatgcg actaaagcgg ttgcactgat ttttgttaat ttgttcatta
     1201 aaaaattcct caagaatata aaaataaaag ccaataaagg ctggttattg taccaataaa
     1261 tagacaagta atctccgtat tagttcataa aatcgttcat ctttacgtta tttcgaaaaa
     1321 atttacattt tataagtaaa tagcttgctg aataagctgc tttttcacaa aaggcagctg
     1381 gttggttagg cttaaaccaa ttcctctgaa taatttttta agcgggtgat tgccgtcaaa
     1441 tagctgtttt aatccttcca ttgtggctaa taatttcatc gcttgggctt tacgctcacg
     1501 ttcaaattgg cgtaaatggc ggtattcacc aatatcttgg ttgtttacca actgtttttg
     1561 gatttcgttt gccagcgttc tggcatcggc aaagcctaaa ttgacaccaa gtcccgccaa
     1621 tgggtgaatg gtatgagcgg catcaccaat caacgcaata cgaggttggg caaagtcacg
     1681 gcagaagcgt gctgcaagcg ggtaaatttc acgcaaactt tgcacttcac ataagccaag
     1741 ctgattatcg aaggcaatcg ttaaggcttt attaaattcg gcttcgcttg cattttttaa
     1801 ttcattggct ttgtttggtg gcagcgacca aacaatcgag cagagatgct catctgccat
     1861 tggcagaaaa gcaaaaatgc tatcttcagc aaagatttga cgagcggttt tgccgtgctt
     1921 ttcggttgtt ttgacattac agactaaggc ggtatgttga taatctttac tggtaagcgg
     1981 cattttcatc tggttacgca cccacgaatt tgcaccgtct gccccgacaa ccaatttagc
     2041 agacagcatt tcgccgttat ctaaggttaa aaatgccccg ttttcgctca cgcccagagt
     2101 ttggggggcg gcgataatat attctacatt agcttgttga gaaacctgtt gccacaatgc
     2161 gtgttgaatc accgcatttt ccaaaataaa gccaagttgt gaaagtccta attgcttgat
     2221 ttcattatca ttattatcaa aatggatatt ggcaaagctg tctttttccc acactttcat
     2281 ttcggtgtaa ggagaaaggc gttgagccgg aatgtgttga aaagcaccaa tctgttccag
     2341 tattttttgg cttgaagcat taatcgcact tacacggtgg taaatcgtat cggcatcaaa
     2401 tttgggcgtg tttttctcaa taattttaat ttggcaatcg acatctttga gcagtccggc
     2461 aagagccagc ccaaccatac cgccgccaac aataacaata tctgcggatt tcataaaatc
     2521 aaatgtaggg gcggtgccct gtgcccgccc taaaatagtt gaaatgaggg ctggcacagg
     2581 accagcccct acttatttaa gatgtttttt tatggtgttt ttccaaactt ttatgccgaa
     2641 cttgcacatt tttgcctttt gcttggaaat attttgccag ttgctcggca ataaatacgg
     2701 aacgatgttt tccaccagtg caaccaatcg caatagtcag gtagctacgg ttattttgtt
     2761 ccaacatcgg cagccacatt tctaaataat tgcgggtttg gtaaataaaa ttatgcactt
     2821 cggtttggcg ttctaagaaa tcaatcaccg gttgctctaa gcctgtcatt gggcgaagct
     2881 ccggattcca atgtgggttc ggtaaaaagc gaacatcaaa aacgtaatcg gaatcggcag
     2941 gtaagccgta tttaaaaccg aatgattgga aaataatttt aagctctttt tcggttgagc
     3001 cttgcagtat ttggcgaaga ttttccgcta attcgtgcga agaaagatga ctggtgtcaa
     3061 taatataatt tgcattttgc accaaaggct caagcaattt ttgttccaaa tccaatgcac
     3121 cttctaacga gagatcgtct tgggtggaaa gcgggtggat tcggcgggaa tcgctataac
     3181 ggcggattaa ggtattgcgt tcgcaatcta aaaaaatcag cttagcattt aaaggctcaa
     3241 gctgggtaag caattcttca atcgcattag gcgtattcgg taaattacga atatctaagc
     3301 tgatgactgc cgaacgattt tcttgagtaa ggtagtaggt taaggttgga attaaaggta
     3361 aagggatatt atccacgcag taataacctg catcttctaa tgctcttaat gctaccgatt
     3421 taccagagcc tgagcgtccg cttataatga ttaattccat atttcctcag tattattctt
     3481 catcttttag gtgattatca gcatacacca aaatttgcca aatatcttct gcggattcag
     3541 ctgctcggag ctgttttaat aacgatttat cggtaagttt ctgtgcaatt gcaggtaggc
     3601 aacttttata ctgttcgcag ctattttccg gaaacatcat tgcataaatt aaatccactt
     3661 ctttgttgtc ttgggcttcg tagtcaatcg cttcttccag ctgtaaaaag accgcaatcg
     3721 gtttagtcag ctcaatatca ccgcaagcgg gcaattttgc atgaggaagt gcaatgcctt
     3781 gatttaagcc ggttgtgcct aacttttcac gtttaaataa attgccaaag cattcaatag
     3841 ggcagagtgc ttcagattgc tgttcggttt ggttgattga ttcagccacg attttaccca
     3901 cgagttctaa cgctcgtttt ttacttgaaa tcagtacacc ttggcgaaca ttttcagggc
     3961 ttagaaattc ggttagtttt gtcataattt ttcatctaaa gatgaaatcc ccaaagaggg
     4021 gattttttag agtttgaatt gatcgcctaa ataaacacgt tttacatcag ggttttcaag
     4081 cacttgctgt ggtgtgccgc tggcaatcat ttcgccgcta ccgacaatgt aggctctttc
     4141 acatacatct agagtttcac gtacgttatg gtcggtaatc aataccccta aaccacgctc
     4201 ttttaaattg acgataattt ttttaatatc aattaccgag attgggtcaa ccccagcaaa
     4261 aggttcatct aacagaataa atttcgggtt cgctgctaat gctcgggcaa tttccacacg
     4321 gcggcgttca ccacctgaaa gtgattgacc taaactattg cgaatatgct caatatggaa
     4381 ttctgtaatc agctcttcgg cacgctcttt acgctgttta tcattgatat ttttacgcac
     4441 ttgtaatacc gacattaagt tatcgtacac acttaaacgg cggaaaatag atgcttcttg
     4501 cggtagatag ccaatccctt gttttgctct gtcgtgcatt ggtagtgtgc tgatatcttg
     4561 gtcgtcaata cgaattgtgc cgtggtcgtg gcgaaccaaa cccacaacca tatagaaagt
     4621 ggtggtttta cctgcgccgt tcggaccgag caagcccacg atttcacctg atttgacatt
     4681 caggctgacg tcttttacca cttggcgttg tttatagctt tttgctaaat gttcggcata
     4741 aagcacagac atatcattta accttatttt ttcttgttat cttgaagttc atttggaatt
     4801 agcacggttt tcactcgggt tttaccgcca ctggtagctt taagttgttg ttttttcaca
     4861 tcataggtaa ttttattggc tttaataaag ctaccttgtt gtttgagttc cgcattgcca
     4921 atcagcgtta aaaattcaga gtttaaatca taatgaacgc tgttgccttt accgtttacc
     4981 ggtttaccgt tatctaaggt ttgttggaat gttacaggtg agcctgtagc gtcaatagtt
     5041 tcttttttac cttcttgacg ggtaattttg acgtttgctg cggtcacttt aatcgaccct
     5101 tgagtgataa cgacattatc gctaaaggtc acgatattgt tagtcatatc taacgattgg
     5161 ctacctgaat caatattaat cggctgatcg gtatcgcctt ttagagcata agcggaaaag
     5221 ctgctaccca gtaacacgct cactaaaata gatttaaaca ttaatttcat tgttattcct
     5281 tgttccaagc aaattattct ttggtttctt gaataatggt cggttcaatg taagatttta
     5341 catctttttg caaagtcgca acttgttgtt ttaagttacc ttttaatcca acccccgttg
     5401 tagtaaaacc ggaacctatc gatttgaccg tactttcggt aaaaatatcc tgtgtattta
     5461 aatcaacagt taacgtatcg gtagtgattt gttgcaaacg tgatgcagga tctaatgcaa
     5521 caagtttgat attacctttt aaatttaaca ttttttcttt ggtgatttct gcataatcgg
     5581 cactgacttt ccactgtttt tgcgtcgact ctttggcaaa aagctcaata aaaggtttaa
     5641 aaaactcagt acgctcagta gactcatagc gtttaatttc agtagcttga gcgaaatatt
     5701 gtgggtttcc ttttagatca tagaccgtgg tggacatttt attccccaca tattcaggct
     5761 gtccttcctt tttaataagc tgatcaagcc ccgtattctc tttctcttgt aagctgtaat
     5821 accagccacc aagtacggca acaataatca gtaaaataac ggttaaacgt ttgttcataa
     5881 tccaaaaata atctaaaaat agtgtttgat tgtagcacag atttgaatag ggatatagta
     5941 cagcgtaaaa agtgcaaaaa agtgagaaaa aataaccgct tgtagggcta aaaactgaca
     6001 agcggttgaa aactcagatt tttttgcaac tttatttaaa ggttgcccaa acaggggagt
     6061 ggtcagacgg tttttccatt gctcgaatgt ctaaatcaat gcctgtttcc acgcaacgct
     6121 cagcaagtga ttttgaagca agaattaaat caatacgcaa gccacgatta tcatcaaaac
     6181 cttttgaacg gtagtcaaac caagagaact tatcgttcac gtctgggttg cctgcacgga
     6241 aagtatcaac caagccgtag ctgtataagc gatctagcca ttcacgctct tcgggtaaga
     6301 atgaacattt accgtcacgc agccagcgtt tgcggtttgg ctcgccgatg ccgatatcca
     6361 aatcagtcgg gctgatgttc atatcgccca taataataat cggattttcc ggctttaatt
     6421 cgctttccaa gtagttctgc aaatcagcat agaatttttg ttttgccggg aatttggttt
     6481 cgtggctgcg attttccccc tgtgggaaat agccgtttaa tacggttagc acgccgaaat
     6541 cggtctcgat atccgccata atcattcgtt tttgagcatc aagcacatct gtcgggaagc
     6601 ctttacgcac cgctataggc tcttttttag tcagtaatgc cacgccgtaa tgacctttct
     6661 gcccgtggtg gaaaacgtgg tagcccaagt gattgactaa atcgtaaggg aagtcttcat
     6721 cagcgacttt gatttcttgt aaaccgagta catcaggctg gtgtttttcg ataatagctt
     6781 ccagttgatg tggtctggct cgtaatccgt tgatattaaa agaaataaat ttcattgata
     6841 atcctaatcg tagggtttgc aaaataaaga agaaaataga ccgcttgtaa tggctacaag
     6901 cggtcatttt tagcaaaatt tttgcatatt atagcttaaa gtgtcattgc tgcaatccaa
     6961 ccgaacacta ataatggaag attaaagtgg ataaaggttg gtactacaga atcccaaatg
     7021 tgatcgtgtt taccatctgc attcaaaccg gaggttggac ctagtgtgga atctgatgcc
     7081 ggagaacctg catcaccaag tgcagcagca acaccgacaa tcgccattgt tgctagtggc
     7141 gaaaaaccaa atgaaacaca aagtggtaca taaattgagg taatgatcgg cactgtggag
     7201 aatgaagagc cgatccccat cgtaataaat aaaccaacga ctaacattaa caatgcagcc
     7261 atttcttttg atgaaatcac atcacgcagg ctttcaacca acgctggcac gccaccggtt
     7321 gaattgacga caccggcaaa gccagaagca gcaatcatta caaaaccaat catcgccatt
     7381 aaacgtaaac cagcttggaa gacatcgtta ctttctttca atctaaacac accacctaag
     7441 gcaaaaatag ctagcccgac taaaccacca ataatggtcg aatttgttgc caattgcact
     7501 gaacaggttg caataatggc taaaatacta atgccgatat ggaatggttt gacatttgcg
     7561 acacgagctt caatatcatc tgaggttggc tcaggtttat cttcaatata gacacgaggt
     7621 ttgcgatacg acacaaagaa agcaaataat agacctaaga tcatacctga tacagggatt
     7681 aacatcgctt tggtcatttc cgctgtggta gtcactaatt ggaacggttc acctgcttgg
     7741 ttgatatttt taactaagat gctttcaata aagatctgcc cgaaacccgc cggaattaac
     7801 atataagtag cagttaaacc aaaggttaaa gcacaggcta ctgcacggcg gtcaatttgc
     7861 aatttattca ttacgcttaa tagtggcgga attaaaatag gaataaaggc aatatgaatc
     7921 gggattaagt tttgtgatga catcgcaaac gccactaaca caaataatac gatgtattta
     7981 aaccaagtga cagagcgacc agacgggctg tgaccaaagg atttgatcac tttataggct
     8041 aataaatcgg tcacgcctga ttttgataga gctacggcaa acgcaccaag aacggcatag
     8101 ttcatagcag tttccgcacc cccacctaaa ccaccagtaa aactttttat tgttttttcc
     8161 aatgcttcgg taaatccagc ctcttctaca ccaagattac cgattagacc gcaagtaagg
     8221 gcagaaataa taagtgcgat tactacatta attctaagca agcttaggat taacagcacg
     8281 ataatcgaaa taaagacttc gtttgataa
//
LOCUS       DANLUT010000113         8272 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLUT010000113 DANLUT010000000
VERSION     DANLUT010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8272
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            58..1050
                     /locus_tag="PXB38_001863"
     CDS             58..1050
                     /locus_tag="PXB38_001863"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL5354152.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSSTYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVSLTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1174..1593)
                     /gene="atpC"
                     /locus_tag="PXB38_001864"
     CDS             complement(1174..1593)
                     /gene="atpC"
                     /locus_tag="PXB38_001864"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL5354153.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADITAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1621..2994)
                     /gene="atpD"
                     /locus_tag="PXB38_001865"
     CDS             complement(1621..2994)
                     /gene="atpD"
                     /locus_tag="PXB38_001865"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL5354154.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(3015..3881)
                     /gene="atpG"
                     /locus_tag="PXB38_001866"
     CDS             complement(3015..3881)
                     /gene="atpG"
                     /locus_tag="PXB38_001866"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL5354155.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKVISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3907..5448)
                     /gene="atpA"
                     /locus_tag="PXB38_001867"
     CDS             complement(3907..5448)
                     /gene="atpA"
                     /locus_tag="PXB38_001867"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL5354156.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5461..5994)
                     /gene="atpH"
                     /locus_tag="PXB38_001868"
     CDS             complement(5461..5994)
                     /gene="atpH"
                     /locus_tag="PXB38_001868"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL5354157.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(6008..6478)
                     /gene="atpF"
                     /locus_tag="PXB38_001869"
     CDS             complement(6008..6478)
                     /gene="atpF"
                     /locus_tag="PXB38_001869"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL5354158.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRAIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDTAANNDIIDKLVAEL"
     gene            complement(6539..6793)
                     /gene="atpE"
                     /locus_tag="PXB38_001870"
     CDS             complement(6539..6793)
                     /gene="atpE"
                     /locus_tag="PXB38_001870"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL5354159.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6911..7699)
                     /gene="atpB"
                     /locus_tag="PXB38_001871"
     CDS             complement(6911..7699)
                     /gene="atpB"
                     /locus_tag="PXB38_001871"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL5354160.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7722..8105)
                     /locus_tag="PXB38_001872"
     CDS             complement(7722..8105)
                     /locus_tag="PXB38_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL5354161.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2468 a         1861 c         1541 g         2402 t
ORIGIN      
        1 aaatgcaatc aagcacgaga aataaaaatc aacattcttt aattaggaaa gcaaacaatg
       61 aaaaaatctt ttattttaca gcaacaagaa atcagtttcg ttaaaaacac ctttacgcaa
      121 taccttattg ataaattagg cattatcgaa gtacaaggtc ctattttgag cgaagtcggc
      181 aacggtatgc aagacaacct ttccggtatc gaaaaagcgg taaaagtaaa cgtaaaatgt
      241 attccaagct ctacttatga agtggttcat tctcttgcaa aatggaaacg ccacacctta
      301 gctcgctttg gatttaaaga aggagaaggg ttatttgttc atatgaaagc tcttcgccct
      361 gatgaagatt ctttagatcg cacacactcg gtatatgttg accaatggga ctgggaaaaa
      421 gtcattcctg aaggtcgccg caacttcgat ttcttaaaag aaaccgtaaa cgaaatctat
      481 aaagcaattc gtttaaccga attagcggtg gaggctcgtt tcgatattcc atctgtattg
      541 cctaaacaaa ttactttcgt tcacagcgaa gacttagtgc aacgctatcc gaatatgacc
      601 agcaaagagc gtgaaaatgc tatctgtaaa gagtgcggag cggtgttctt aatcggtatc
      661 ggcggaaaat tatcagacgg taaacctcac gatggacgtg ctccggacta cgatgactgg
      721 acaaccgaat ccgaacaagg ctacaaaggt ttaaacggtg atattctcgt ttggaacgaa
      781 gaactcggca cagcgtttga gctttcctca atgggtattc gtgtggatga aactgcctta
      841 cgcctacaag tctctttaac cggcgacgaa gaccgcctcg aaatggattg gcacaaagat
      901 ttattagccg gcagactccc gctttctatc ggcggcggta tcggtcaatc tcgcttagtg
      961 atgttcttac tacgcaaaaa acacatcggt gaggtgcaat ccagtgtctg gccaaaagca
     1021 gtatttgaag agtttgagaa tattctttaa taaaacaaaa aagcgaacct tagggttcgc
     1081 ttttgctttc tacaagcggt cttattttgc aaaaaattta ctgtttttaa ccgcttgtaa
     1141 aacaaaaccc cactttcgag gggttttttg atattaacgt ttattcgcta atttggtttt
     1201 agtgagttcg taaacacgca gtttcgcaat ttctctcgct aacttcgcgg ttatatccgc
     1261 atcgctggtt tttgaaagtg tttcttctac tttgcgtttt gcggcaagaa tacgctgttc
     1321 gtctagctct tcgccacgaa ttgcggtatc tgccaacact gttactacag tcggttgtac
     1381 ttcaaggaaa ccacctgaaa cgtaaataaa ctcttctttg ccgtcagcta aagtgaattt
     1441 aaccattccc ggtttaattg cggttaatag cggtgcatgc cctgcataca cccctaattc
     1501 accgtctgtt cctgaaacac gcacgctggt aactgtgcct tcaaagattt tacgttctgc
     1561 actcactacc gtgagttcaa attgagatgc catgttgttc tcctttagtt tagaacaaaa
     1621 ttacatctgt tttgctcttt caaccacttc gtcaattgaa cccgccatat agaacgcttg
     1681 ttccggaata tggtcgtatt cgccttctaa aatgccttta aagccacgaa ttgtttcttt
     1741 taacggtacg aatttgcccg gtacgccgtt gaatacttcc gcaacgtgga atggttgtga
     1801 aaggaaacgt tcgattttac gcgcacgagc aacaaggcgt ttgtcgtctt ccgataattc
     1861 atccataccc aaaattgcaa tgatgtcttt taactcttta taacgttgta atgtaccttg
     1921 tacaccacga gcaacgttat agtgttcctc accaaccacg agtggatcta actgacgaga
     1981 ggttgagtca agagggtcaa ccgccgggta aataccgagt gaagcgatat tacggcttaa
     2041 taccaccgtt gagtctaagt gggcaaaggt agttgccgga gacgggtcag ttaagtcatc
     2101 cgccggaaca tataccgctt gcacagaggt aatagagccg gttttggttg aggtaatacg
     2161 ctcctgtaat acgcccatct cttctgcaag agtcggctga taacctaccg cagacggcat
     2221 acgacctaat aacgcagata cttcggtacc agctaaagta taacggtaga tgttatccac
     2281 gaagaataat acgtcacgac cttcatcacg gaatttttct gccatggtta agccggttaa
     2341 tgccacacgc agacggttgc ccggtggttc gttcatttga ccgtaaacca gcgatacttt
     2401 gtctaatacg ttagagtctt tcatttcgtg gtagaagtca ttaccctcac gagtacgctc
     2461 acctacaccg gcgaataccg agtaaccgct atgttcgata gcgatgttac ggattaactc
     2521 catcatattt acggttttac ctacacccgc accaccgaat aagccaactt taccaccctt
     2581 agcaaatgga gcaactaagt cgataacttt gataccggtc tctaaaagct cggtgctgtt
     2641 cgcttgttct tcgtagcttg gtgctgcacg gtggattgtc caacgttctt cttcaccgat
     2701 tgggcctgct tcatcaattg gctcacctaa tacgttcata atacgaccga gtgtttttgt
     2761 accaaccggt acttcaatcg ctttattcgt attttcaact tttaagccac gttttaaacc
     2821 atcagatgaa ccaagtgcga tacaacggac cacaccgcca cctaattgtt gttgaacttc
     2881 aagggttaat cctgattcaa cttttaatgc atcataaact tttggtactg catcttgcgg
     2941 aaactcaaca tcgattaccg caccgatgat ctgtacaatt tttcccgttg ccattaccgt
     3001 tcctctattc attgttaaat tgctgcggca cccgcgacaa tttcatttaa ttcattcgta
     3061 atacttgctt gacgagcttt gttatacact aactgtaact cattaatcag attacctgcg
     3121 ttatcggttg ctgctttcat tgccaccatt cgagcagcct gttcagacgc aagattatct
     3181 accactgcct gataaacttg agattctaaa taacgaacca gtaagctgtc taataacgct
     3241 tgtggatttg gttcatagag ataatcccaa gaaccagttt gctctaatga gtcattttcc
     3301 agtgcaggca aaggaagcaa ctgttgtact gtcggttttt gtgacatcgt gtttataaaa
     3361 cggttatata ccacatacac ttcatcaatt tcgccttcac ggtaggcatt taccatacca
     3421 ttaacaatac cgactaaatc ttccattgcc ggtgtatcac ccaatccatt gatatgacct
     3481 ttaatctcta gccccattgg gttaaaaaag gagatccctt tatttcccac cacagcaagt
     3541 cgagacttaa caccttggtc atctttttct ttcaattcat gtaaaacggt tttaaataaa
     3601 ttgatattta agccaccaca taaaccgcga tcggttgaaa ctactaaata gccaactttt
     3661 tttaccggac gtggggtcaa aaatgggtgt ttatactcaa tgttaccttt ggcaatatgg
     3721 ctaattacct tgcgaatact ttcagcataa gggcgagaag ccgccatacg ctcttgggtt
     3781 ttacgcattt ttgatgcggc aaccatttcc atcgctttgg taattttttg tgtattacga
     3841 acacttgcaa ttttggttct tatctcttta gcacctgcca tattatttct ccgctaaaaa
     3901 gttagattac caagcactgt tctttttgaa accagataaa atctcgttca atttatcttt
     3961 aatttcatcg ttgaaattgc cggattttga cagttcttgc ataaactcgc cgtagttact
     4021 ttgagcataa gctaataagt ttgcttcaaa tgagccaaca cgctcaaccg gaatatcatc
     4081 taagtaaccg tattcagctg ctgctaatga taaacctaat tgtgcaacag acatcggctc
     4141 gaattgtttt tgtttcaaca attcagttac tttttgaccg tgtgaaagct gtttacgtgt
     4201 tgcttcatca agatctgatg cgaactgggc aaatgccgct aattcacggt attgagcaag
     4261 tgcggtacgg ataccaccgg caagcttctt aaccagttta gtttgtgcag aaccacctac
     4321 acgggaaacc gagatacccg ggtttaccgc agggcgaata ccggcattga ataagcctga
     4381 ttctaagaaa atctgaccat cggtaattga aattacgtta gtcggtacga aggctgaaac
     4441 gtcacctgct tgggtttcga tgatcggtaa tgcggttaaa gagccggttt gacctttcac
     4501 agcaccgtta gtgaaacgtt ctacatagtc tgcatttaca cgagacgcac gctctaataa
     4561 gcgagagtgt agatagaaca catcacccgg gaatgcttca cgacccggtg gacggcgtaa
     4621 taacaatgaa atttgacggt aagcaactgc ttgcttagac aaatcatcgt aaacgatcaa
     4681 cgcatcttca ccacggtcac ggaagtattc acccattgca caacctgcat aaggtgcaag
     4741 atattgtaat gcagcagatt cagacgcaga agccactaca acgatagtgt tcgctaatgc
     4801 accgtgttct tctaatttac gcaccacgtt ggcgatagtt gatgcctttt gaccgattgc
     4861 aacgtagata catttaatgc ctgaatcacg ttggttgatg atcgcatcaa tcgctaatgc
     4921 ggttttaccg gtttgacggt caccgataat caattcacgc tgaccacgac cgattggtac
     4981 cattgagtcc accgctttgt aaccggtttg aaccggttga tcaaccgatt gacggtcgat
     5041 aacgcccggt gcgatcactt cgattggtga gaaaccgtca ttttggattt cgcctttacc
     5101 atcgattggc tgacctaagg tatttacaac acgacctaat aagccacgac caaccggcac
     5161 ttctaaaata cgaccggtac attgtacttg cataccttct gctaaatcgg cataaggtcc
     5221 cattacaact gcaccaacag aatctctttc taagtttaat gcaatcgcat aacgattgcc
     5281 cggtaatgca atcatttcac cttgcattac atcagataag ccgtggatac gaataacccc
     5341 gtcacttacc gaaacgattg tccctgtgct ttgagcttca ctcaccacat taaactgggc
     5401 aatacgtttt ttaatcaatt cactaatttc agttgaattt agttgcattt tttattcctc
     5461 ttacaagctc aactcttgac tcaagcggtt tagctgtcca cgactactac catcaatcac
     5521 tacatcatca taacgaatga tcacacccgc aattaatgaa ctatctattg atgaagtaat
     5581 acgtactttc gttccgagtc gcttttccat agcattggca atttttgctt cttgtgcatc
     5641 tgttaattta tctgcagaaa caacctcaac atctttaatt gattcctgtt ctgctcttaa
     5701 ttctaaaaat gcattcaata ccgcaggtaa tactgctaaa cgcttgttat cagccattac
     5761 gcgaatgaaa ttttgcccat attgatctaa ttgttcgcca caaatcttga taaacgtctc
     5821 agaaatctga ccgcttgcaa gtgatgagtt aagaaaacta gctacttgct catcgttagc
     5881 gacggcggca gaaaaagtta acatctgctg ccattgttcc aattgacctt gttctaaagc
     5941 aaaatcgaaa gccgctttag cataggggcg agctactgtg cttaattctg acatctgccc
     6001 ctcctagtta tagttccgca actagcttat caataatatc gttgttcgca gcggtatcca
     6061 ccgaacgacc cacgattttt tctgcaccag caatagccaa tgcagccact ttttgacgaa
     6121 gctcttcttg aacgcgttta cgttcgcttt caacttccgc gtaaccctgt tcaataatac
     6181 gttgacgttc cacttcagct tctgcttgta cagattctaa aatttcatta cgacgttttg
     6241 ttgctaaatc aatgatattt tgtgcttctt ctttcgctct aaggatttct tgatccgcag
     6301 ccgctttaga atcagcttgt tcttgtttcg ctttttcggc agaagccaat gcgctagcaa
     6361 tatttgcctg acgctcttct atcgctcgaa ttagcggtgg ccatacaaac ttcatacaga
     6421 acgcaacaaa aagtgcgaac gcaatcagtt gaccaattag tgttgcattt aaattcacaa
     6481 cgccctccta aaagccggta aagttattca actgaataac ggttaatcaa atcccgactt
     6541 atttcaataa atcaatgaac gggtttgcga agatgaatag taatgaaata cctacagcga
     6601 tcattgcgat agcatctaaa agaccagcaa cgataaacat tttagtttgt aagcttgatg
     6661 ctaattccgg ctgacgtgca gatgactcta agaatttgcc acctaagata gcaaagccga
     6721 tagcagtacc aagagcagcg aaagctaata aaattgaagc accaataatt gttgctgtga
     6781 ttactgattc cataatgttc tccattagat tgaggaatta gcccgaaggc tgggttgttg
     6841 ataaaaatac atatcaagcg gtcaatattt tgcaaaaatt tgcgaaaaac ctaccgcttg
     6901 taaggctagt ttaatgatcc gctttgttat aagcgatact caaataaaca atcgttagca
     6961 tcataaaaat aaaggcttga agcgtaataa ctaaaatatg gaaaatcgcc caaaccaagt
     7021 gtaatggaat ccccaacgcc tgtagagcga agttgtctgc catatacatt actgcaataa
     7081 ggataaagat taactcacct gcatacatat taccgaataa acggaacgcc aatgaaatcg
     7141 gttttgccaa aagcgttacc gtttcaagaa taaagtttac cggaatgaat gcccagtggt
     7201 taaacgggtg taacgtgtat tctttcacta aaccgccaaa acctttcgat ttcaccgtgt
     7261 aaaataaaat taacgcaaat acacaaatag acatacccag tgttgcacta atatctgccg
     7321 ttggtactgc acgcaaatag tgaataccaa acagattggc taactgtggt aagaaatcga
     7381 ccgggataag gtcgatcgca ttcataataa acacccaaca gaaaatcgtt aatgctaatg
     7441 gtgcaattac attgcgaggt ccgtggaagt tatccttcac taaaccgttt acccactcaa
     7501 taacaatctc aacaaaacat tgcaattttc ccggaacgcc cgttgttgca ttttttgcta
     7561 cacgcgagaa cacccataaa aaaatcgcac ctgccactaa agagaagaac agtgtatcta
     7621 aatgcactgc ccaaaagcct tcacctgtcg ataaaaaact caagtgatgg ctaatatatt
     7681 ctgctgtcgt tccagccata acatatcctt ttaaattaaa attagtggtg atgtttgctt
     7741 aatacaaacg ggatcatatt atttaaaaat aatgcgataa aataacccac gaaaaacaac
     7801 acaacatcta gagcagggat aagtttaaaa cagccgatca ccaaaataat agtaaccaac
     7861 catttcattc cttcaccacg atagaaagcg gtcatttttg actgattttt tgcagatttc
     7921 ttaaagaaaa cccaatatac aaacacaaga tgaggcaaaa aactcgctaa agcaccgcct
     7981 agaaaggaaa aattaaaatt cattttccat aaagacactc caagtgcaaa aacgcacaag
     8041 agaaaaaatt caacctttaa tgcttgttta tattgtgatt ttgctctatt gattacagct
     8101 gacacatttt atcctttttg aataagtaaa ccacacaatc aggctaataa ttagccactg
     8161 ttgaatcaaa gaaaatccgt gctaaattat actttacaaa tgaattgttg caaccgaaaa
     8221 gcgacacaaa aacttgttat tcttcacatt tttgaaaaaa aattttattt ac
//
LOCUS       DANLUT010000114         7946 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLUT010000114 DANLUT010000000
VERSION     DANLUT010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1269
                     /locus_tag="PXB38_001873"
     CDS             <1..1269
                     /locus_tag="PXB38_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5354162.1"
                     /translation="VLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAIIYAYV
                     IFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSLFTYLALLPLTLI
                     WYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAIILISVF
                     ILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEYFYSML
                     HYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADMANARE
                     YITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCSSITQD
                     PTEFVIYFKGLGTTIEFNINDILKKIFAKHHLSITQQHKNEVLEKIKGDLLKMDLGNS
                     VLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(1312..4340)
                     /locus_tag="PXB38_001874"
                     /pseudo
     CDS             complement(1312..4340)
                     /locus_tag="PXB38_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
     gene            4518..5375
                     /gene="menB"
                     /locus_tag="PXB38_001875"
     CDS             4518..5375
                     /gene="menB"
                     /locus_tag="PXB38_001875"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL5354163.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            5458..7860
                     /gene="mrcB"
                     /locus_tag="PXB38_001876"
     CDS             5458..7860
                     /gene="mrcB"
                     /locus_tag="PXB38_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL5354164.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLENLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         2346 a         1592 c         1756 g         2252 t
ORIGIN      
        1 gttttatttt taactcttga acaacagact accaatgatt ctagatatct aaaccgcatt
       61 agtgaaatgt tactaaactg gattttgtct ccggcattaa ttatctatac tgcaattatt
      121 tatgcttatg taatttttat tgcggctaag gggcaaatgc cagatggggt tgttgcaaac
      181 gtagcgcttc cctatttagc tttcggccta gctatacaag cggtgcaatt attactaaaa
      241 aatgcaaaat ggcagtggtt ttattctctc tttacctatt tagcactttt gccgttaaca
      301 ttaatttggt atgccatcta tattcgtttc agccattatg gcttaactga agcccgtatt
      361 tatttagtga ttggcacaat aaccttatct atttgctata ccttattact atttaaacag
      421 ttggcgcaat atcgtctctt ttctgcagtg tcgatagcaa ttattttaat ttcagtgttt
      481 attttagatc cgaaaacagt tgcgcttaaa gatcaaacca agcggttgga caactatttg
      541 ctaaaacaca aattattaga tgtaaataac aaaatcagca caaaagctgt acttaaatac
      601 caagaatcat taaatgaaaa ccgagatgaa gccgaatatt tttattcaat gctccactat
      661 gttgccagag gaatgcctgc tgcacaattt aaagagaaat atggcgtaaa ttcaagctac
      721 gatttaatga gtgaaataag agaaagaaat actgacccac gttattttga agctactaat
      781 tctgagctgg ttcgcttaac taaagcagat atggcaaatg ctcgtgaata tattacattt
      841 agtagccaat tatatcggcc taattcattt tcccatcaaa aaatagaaaa taagctatgc
      901 caaaaactcc tttctcaagg ttactatttt gagggaaata tattaaatat tgagtatcaa
      961 tactcagaaa cggctcaaga ctgctcttca ataacacaag atcctactga atttgttatc
     1021 tactttaaag gacttgggac tactattgaa tttaacatta acgatatttt gaaaaaaatc
     1081 tttgctaaac atcatttatc tattacccag caacacaaaa atgaggtttt agaaaagatt
     1141 aaaggcgatt tactcaaaat ggatttagga aattcagtac ttgggcttaa gcatattgag
     1201 ttaagatttg aagacaatat cggttatata gtagaaagta ttagtacaca atatattatg
     1261 ctgaaataaa aggagatgct cgttcaatta aatttgaacg agcatttttc gttaaaaatt
     1321 caatttaagc agccactcaa aattagtctc atttaaccga tattgcggtt tcaaattcgg
     1381 gccgcaagag tttgagccaa tgccgctcat tttgtaatcg acacacagca cggtggaagg
     1441 gctttctacc aaatcataac tgtggctttt agtggttagc tcttcctgtg tgtaaggcga
     1501 aagattaaaa ctaaacggct gtggagaagt aacagttatc ccatttgctt gcacataatg
     1561 cgtaccgaag tggctgccgt tttcctgcgg gttgagataa tcggtatgat tttctcgggt
     1621 gctggtttga taagctccga gtttcgccaa atggtatttg tcgatataac tctcctgctc
     1681 gccatagcca aaatagctca cttggttatt ccgtttattc aagaaaaacc gcaagccaaa
     1741 gcgaggtaaa aacggcaaat gagcggggcg ggttgcctga acctgaatcg tcatttcgcc
     1801 attcggggca agatgataat tcactttcag ggttaaaatc cgactttgag cggttgccac
     1861 aatgccacat tcggcagtaa tgtttacgcc gtttttatct tgcatcagtt cggtatgata
     1921 cgccctggtg taacagttat cgtagccggc ttttttccaa aactcacgaa ttaagcggtc
     1981 gttatcggtt ggggctcgcc aaatattgaa atccaacggt tgctcaatta ctgcctcgcc
     2041 gtttttctca atccggctga aaatgccttt gagtttatcg aaagtgtagc gatagtcgcc
     2101 ctgttgaatc cgccattcat ttgcaaaatc ttgcacaaaa atgaccgctt gcgggcgtgg
     2161 attaagtgct ggagtgacca tcgcttgatg cagcgtgatt tggtcaaagc ctaagtgatg
     2221 ccctttttcc aacagagccg tgctttcatt taaagaataa tcaagggtta aaagttgcaa
     2281 tttgccgttt ggttcgggca gcgttagcgg caaacaagcg gtctgatttg gctgacaatt
     2341 taccaaacat tgtccctgca gggtggtttc gccgttttcg ctgaaacagt aatgcacggt
     2401 cagataatca gctaagtcgc tgaaatccaa ctgatttttc agccaaattt tgcccgcttt
     2461 taactcagct cgcaccgggc gattcacatt tttcacttct aacaaattag agtgtggcac
     2521 acgctgttgg gaaaccaagc cgtccataca gaaattgcca tcgtgcaagg tttcgccgaa
     2581 atcaccgcca tagccgtatt tttcggtctt ctgttcggca cttagctcag agttggggag
     2641 cagaggagca tggtcgcacc attcccacac aaagccaccg cacgcaccgc tgtagcgttg
     2701 gaaggtttgc caataatctt ccatatcacc actcgaattg cccatcgcgt gagaatattc
     2761 acacaaaata aaaggtttgt ggttggcaga gtcggaaaaa tattcctcta accgccggtg
     2821 cttgggtaca tctcgctgta taaatcgagg tttgaaagat cgttttgatg tgccgaatgt
     2881 tggtaaatcg agccttcgta gtgagttaaa cggcttggat cccgttgttt tacccaacgg
     2941 gctgcgactt caaaattttc accaaagccg gattcgttac caagtgacca aataataacc
     3001 gaagtgcggt ttttgtctcg ctccacattg gcaatgttgc gatctaaaat cgcctgtttg
     3061 aacagcggat ctcttgcaaa ataacagaaa ttatcgaccg cttgttggcg aatttcttcc
     3121 tgtttgttcg ggtttggcac attcaggaaa atgctgtttt ccggactttc aatatacact
     3181 gcactggagc cgtgagattc aagatcactt tcggcaatca gataaaaacc gagctgatcg
     3241 cacaattcat taaaccacgg agcgttcggg taatgggcgg tgcgaatagc gttgatgtta
     3301 tgggctttca ttaagcgtaa atccaccaac gcttgctcac ggctaatgct gtagccggtt
     3361 ttcgggtcgg aatcgtggcg gtttacccct ttaaatttaa tcggggcgtt gttgaatagc
     3421 atcacgccat tttccacacg aatctgacga aagccgattt tttgctcaat aatttcgttt
     3481 tggtagctca agcatagcgt gtagagtgtc ggatcttccg cattccacaa acacaaattg
     3541 caaatttctt ggcaaaaatc accgcttgtt tgctcgcaga ctaagcggtt ttcagggtcg
     3601 aaaagttgaa aatgcacagc ttcggtgtag gtggaaaatt gtgtttccac cttgagttct
     3661 gcctttgaaa gatcagcgtt taactggtag cggataaaga aatcttgcag gtagttttgc
     3721 tcacgttcca aaatataaac atcacggaaa atgcctgaca ttcggaattt gtcttgatct
     3781 tccaaataac tgccgtcaca ccattttagc accaccacga cgaggctgtt tttgccctgt
     3841 ttaagctgtt tggtgatgtc aaattcattg gtgctgtggc tgatttgccc gtagccgaca
     3901 aattcgccgt ttacataaac aaacaggcac gaatctacgc cctcaaaatt tagcaaatag
     3961 cgtttgttag gcttggggtt aaacgtgatt tcacgctgat acaccccgca agggttttgg
     4021 tgtggcacat aaggcggatc aaacggaatc gggtagttga tgttagtgta ttgatgggca
     4081 tcaaagcctt gagtttgcca gttagacggc acggggattt ggtgggtaaa tttggtgttg
     4141 aggaaatcct ccggcagatc gtgcggactt ggatagaaat taaacttcca atcgccattt
     4201 agcaaagtaa ataactcaga ttgttcccgt tccaactgat tcggcgtttg ccctttagca
     4261 aaaggaataa aataagcgtg gtgtggcgtg gtattaaggt gcaacacact cgggtcttgg
     4321 tagtaattcg gtaacgacat aaaagcccta tgatcaaaaa gatataaata cgaatacact
     4381 ttaattctct tataaaatag ggcaatcaac tatgtgaaaa attgtgaggc ggatcacaaa
     4441 ataatttcct cacctttttc cttcgattcc gttataatca caagaatttt ttatgtcatt
     4501 tttcaaggaa tttaccaatg ttatatccaa gcgaagaatt tttatatgca ccggttgagt
     4561 gggttgatca cagcgaaggt tacaccgata ttcgttacca taaatcaaaa gacggtatcg
     4621 ctaaaatcac cattaatcgt ccggaagtgc gtaatgcttt ccgtccgcaa acggtaaaag
     4681 agatgattga agccttttct gatgcccgtt ttgatgaaaa aatcggcgtc atcgtattaa
     4741 ccggtgaagg cgaatatgcg ttctgtgccg gcggcgacca aaaagtgcgt ggcgattacg
     4801 gcggctacaa agatgaaagc ggtgtgcatc acttaaatgt gttggatttc caacgtgata
     4861 ttcgtacctg cccgaaaccg gtggtggcaa tggttgccgg ctatgcgatt ggtggtggac
     4921 acgttttaca tatgttatgt gatttaacca ttgccgctga caatgcaaaa ttcggtcaaa
     4981 ccggcccgaa agtggggtca tttgacggcg gttggggtgc aagctatatg gcacgtttag
     5041 tcggtcagaa aaaagcgcgt gaaatttggt tcttatgccg tcaatataat gcacaagaag
     5101 cgttagatat gggcttaatc aataccgttg tgccttatgc tgatttagaa aaagagactg
     5161 tgcgttggtg tcgcgaaatg ctacaaaaca gcccgattgc cttacgttgc ttaaaagcag
     5221 cattgaatgc agattgtgac ggtcaggctg gcctgcaaga gcttgctggt aatgcaacaa
     5281 tgttgttcta tatgacagaa gaagggcaag aaggacgcaa tgcgttcaac gagaaacgtg
     5341 agccggactt cagcaaattc cgccgcaatc cataattgac ggcaaataca agcggttcga
     5401 ttttgcaaaa aatttgcaaa aatcgaccgc ttaccttttc taatttaagt taattttatg
     5461 tcagatgttg agttaaacga gcagagcgag caagagcctg agcaaaaacc gaaaaagcga
     5521 aactatttcc tttcaacctt attcaaaatc ggggtgatag gagcttgcag tatggctttt
     5581 tacggcattt atttagacgg taaaatccgt agcaaaatgg atggacagat atgggaatta
     5641 ccagctgagg tgtatgctcg tattgaaagc attaaaattg aagacaactt aacgcttgag
     5701 caaaccaaac aagcgttgct ggataacggc tatcgtcaag tttctcaagt tgcgacacca
     5761 ggcgatttca aaattgaaga aaatcagctg gtgttgctac gccgagcttt cccgtttcca
     5821 gaaacaccgg aatcgcaacg agtgcttcgt ttaactttca aacaagataa attaacttat
     5881 attgaagatt tggtgcaggg taagttgatc gaggagttcc gcttggatcc gaaattactg
     5941 gcgttactgc attccgatag cgatgaagaa cgtcaagcat tacgcttaca acaataccct
     6001 cgcttgttaa ttgagtcact gattttaacc gaagatcgcc gcttttatca gcacgatggg
     6061 attagcccaa tcggtattgc ccgtgcttta atcactaact accaagctgg cagaacagtg
     6121 cagggtggca gtaccttaac gcaacagtta gtgaaaaact tgttcttaag taatgaaaga
     6181 tcgttggtgc gtaaggtaaa tgaagcgtta atgtcggtga ttttagactt ccgttacgat
     6241 aaaaaccgca ttttagaaac ctatctcaac gaaatttatt tagggcagaa cggtagctac
     6301 caaattcacg gttttgcatt ggcaagccaa ttctattttg gtcgtccgat ccaagagatt
     6361 agcttagacc aaattgcgtt attggtggga atggtaaaag gtccatcact gtataacccg
     6421 tggcgaaatc cgcaaggtgc ggtagagcga cgtaatgtgg tgttgcgatt attgctggat
     6481 catcaagtga tcaatcaaga actttacgct ctgttaagct cccgcccgct taatattcgt
     6541 gaaaaaggca cgatttaccg tgagcaacct gcctttatgc aggcattaac cattgatttg
     6601 aaaaatgagt taggcgaaat taagtcagct caactttccg gtactaaaat ttttacgacc
     6661 cttgaccgta aacagcaacg ttcagccgaa caagcagtga ttaccggttt ggaaaatctg
     6721 gaaagtaaaa ataaaaaagt cagcgatttg caatcggcta ttgtcgtggc ggaataccgc
     6781 acaggtaaag tgagggcgat agtaggagac cgcttaaccc aatttgccgg ctttaaccgt
     6841 gcgattcagt caaaacgcca aatcggttct ttagtcaaac catcggttta tgcgattgcc
     6901 ttggcacagc ctgaattatt ccgtttaaat acaccgatcc aaaataaaca aatttcaatt
     6961 aaggttggtt caacctactg gacaccccgt aactacgacc gcagttttag tggctcggtg
     7021 atgttaatgg acgccttagt ccgctctctg aatattccaa cggtgaatat tggtatgaaa
     7081 gttggcttaa aaaaagtcat tgccaaacaa aaagagatgg gctgggataa tgcggaaatt
     7141 ccgccttacc catcaacctt gctaggttca tattcgatct cgccttacga tgtaacccgc
     7201 tcttatcaag taattgccaa cgaagggctg aaaacaccat taaccaccat tgaggcgatt
     7261 atttcgcaca atggcgaaat gttctatcag cgagatagcg gcaaagtgag cgagcaggtg
     7321 cttccaccgg aagctgcggt tcaaacaatg tatgcgatgc aacaggttgt ggaacgaggt
     7381 acggctcgta gcttacaaaa cgattttgcc aaactgaaat tagccggcaa aaccggtaca
     7441 accaataacg ctcgagatac ttggtttgtg ggaattgatg gcgaacacgt cacgaccgtc
     7501 tggctgggta aagataacaa tggggatacc aacctcaccg gttcaagtgg tgcattgtat
     7561 gtgtataagc aatatcttga gagagccttg cctcaggcgt atagattacc gaaacttaat
     7621 acgatgcaat gggtggggat taatagctat ggtagctgga attgcgatag tggcagacaa
     7681 attccagttt ggcgagataa agggcaacgt tattgtacca gtgcaggtaa tgtagtggct
     7741 acagaaaaac caagtgtttg ggatgcactt tcgctgaaaa aagaaaatat cgaggctaaa
     7801 gcagaagaag ctgaagggaa gcaaccaatc cctactgaag aagttgcacc aattgaataa
     7861 aaataaattt gatagccatt atcattcaag acgcacaatc tgataggtta tacctataaa
     7921 aagtatatat tataaccatt tgctag
//
LOCUS       DANLUT010000115         7919 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLUT010000115 DANLUT010000000
VERSION     DANLUT010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7919
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            12..4208
                     /locus_tag="PXB38_001877"
     CDS             12..4208
                     /locus_tag="PXB38_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5354165.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KVSISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(4263..5357)
                     /gene="mobA"
                     /locus_tag="PXB38_001878"
     CDS             complement(4263..5357)
                     /gene="mobA"
                     /locus_tag="PXB38_001878"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5354166.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            5444..5713
                     /locus_tag="PXB38_001879"
     CDS             5444..5713
                     /locus_tag="PXB38_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL5354167.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5777..6415
                     /locus_tag="PXB38_001880"
     CDS             5777..6415
                     /locus_tag="PXB38_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5354168.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            6499..7539
                     /locus_tag="PXB38_001881"
     CDS             6499..7539
                     /locus_tag="PXB38_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5354169.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNPVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKVWENFVKAEIVPHFGPVSF
                     QQNALYNQEKTVVRQMTACSLIGSRESVEQQLKSLKARIEIDEIMAVSYIFDEQKQHQ
                     SYTWLKEIADKV"
     gene            7541..7834
                     /locus_tag="PXB38_001882"
     CDS             7541..7834
                     /locus_tag="PXB38_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5354170.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2641 a         1569 c         1492 g         2217 t
ORIGIN      
        1 acttctcatt tatgaagacc aaaacattta ctcgttctta tcttgcttct tttgtaacaa
       61 tcgtattaag tttacctgct gtagcatctg ttgtacgtaa tgatgtggac tatcaatact
      121 tccgcgattt tgccgaaaat aaaggaccat tttcagttgg ttcaatgaat attgatatta
      181 aagacaacaa tggacaactt gtaggcacga tgcttcataa tttaccaatg gttgatttta
      241 gtgctatggt aagaggtgga tattctactt taattgcacc acaatattta gttagtgttg
      301 cacataatac tggatataaa aatgttcaat ttggtgctgc aggttataac cctgattcac
      361 atcactatac ttataaaatt gttgaccgca atgattatga aaaggttcaa ggagggttgc
      421 acccagacta tcatactcct cgattaaata aattagtaac agaagttgtg cctgccgcag
      481 tcaccaatgc aggtacatct attaaaccct acttaaatga agaacgcttc cctatgtttc
      541 ttcgtgctgg ttcagggaca caagcgctaa gaggaaaaga aagtaataaa acaactggaa
      601 tcgctggtgc ttatgaatat cttactggcg gtaccacatt acaattatct aaaagctccc
      661 ctgatcactg gttagattat tcaagtaacc tttatcaagt aagctatgga ccactttcaa
      721 cctatgcact acctggtgat agtggttcag gttcttacgc ctatgatatg aacgaaaaac
      781 gatgggtatt agttggtgtg ctcaatttct ataatggtat ggataatcaa ttcaaccgct
      841 ctgcgattat ccgtaaagat ttccacgaga aaaaatttgc cgaagatatt gcaggaacaa
      901 tcaataatac cgtacaaaat gcacaattca attggactgc tcaaggtaaa tccagctctc
      961 ttagtcaatc aaataatgtg caaaaactca acgttgatct aaaagatagt agcattgcaa
     1021 accaaaacac ttctctgcca caagaaaatc acggtaaaac cattaatttt aatggtaaag
     1081 atgcaactat tgtactaaaa caggatattg accaaggtgc aggtgcatta aatctgaacg
     1141 ctaatctcac tattcgtcct gaaacagacc aaacttggca aggtgcaggt attatcgtcg
     1201 gtaaagataa aaaagtgaat tggcaagtaa aaaatccaca aggcgatcgt ttatctaaac
     1261 tcggggaagg aacactctat gtaaatggac gtggacagaa tcttggcgat atcagtgtag
     1321 gtgatggtat tgtaatactt aaccagcaag ccgatcacca aggaagaaaa caggccttta
     1381 atacagtagg aatcgtaagt ggtcgcccca ctgttgtgct aggtagtgca gatcaagtta
     1441 atcccgataa tatttacttt ggatttcgcg gaggtcgttt agacctaaac ggtaacagca
     1501 tcgcctttaa acgtattcaa aacagcgata aacatgctcg tattgtaaac cacaatcgcg
     1561 atcacatttc taccttaata atacaaggcc aagatcctct cactagtaat gatcttatat
     1621 ggggaaaatg ggcaagtaat agcccagcag acatttacga atataccaat ccttatcaaa
     1681 ataaacgcaa agattacttc cgtctgaaag gtaattcgag agtatattat ccaacgaatg
     1741 ctacaagtaa cgatcactgg gaatttcttt ccagtaaccg cgagcaagca atacagaaaa
     1801 tcctagatgc caaaaactta agacagcgct atgacacgtt taatggtttt ataggggaag
     1861 atgcttccaa taaaactaat gggatattaa atgtcgtgtt tgatacaaaa acagaagtaa
     1921 atacagaaca agataaatta aagaatatct acacaatgtc gggaggattt aaccttaatg
     1981 gtgaactcac ccttaaaggt ggtacattgt tgctttctgg tcacccaacg ccacacgctt
     2041 atgatattaa gaataagcat gatgttgtgc gtgaaaacga ttggcaagac agccatttta
     2101 ctgctaaaaa tatcacggta aataaaatgg cacaactcta tatcgggaga aatgtcaatg
     2161 aagtaaatag tcactttact gcgactgata aagccaaact caatttagga tttattaatc
     2221 gttcaacgcc aagttgctat gattctgaat acacaggcac tacacattgt gaagtgcaag
     2281 cggtcatttc cgataatatt tttgcaaatc tagcaacaac cgccattaaa ggtaatgtta
     2341 aattacaaaa ccatagccaa ttaaatttag gcaaagcaaa cctcactggt tctgtacaag
     2401 ctgatcaaac aactcatatc actttagcaa atcacagtca ctggttaaac aatggtacga
     2461 gccagattgg gcatcttaca atggaaaaag ggtcgatcct tagcctaaac gataaatttg
     2521 ctaccacgga aatcccagtc cgattcaaca agatgatcat ccaaggtaat ctaaaaggta
     2581 atggacgaat taactatacc gcaaatttag ccaagggcga atctgatcat ctccaagttg
     2641 acggtattgc tgaaggaaat tttgtccttg ccgttagaaa tagcacaact gaagcaaatc
     2701 caaaaagctc attaaaccta ctaagcttaa aaaatagcaa ccaagaaggc aataaagttt
     2761 ctatttctct agaaaataat tatgttgatc taggtactta tcgttatgta ttagaaaatc
     2821 gtaatcacaa ttaccattta tttaatccat taataccaaa ttcaacctct aaagagatga
     2881 atgctacatc tgtatcctct attccaaaaa aggaatctgt tactaatgtt cctactttag
     2941 ataagaaaga aactgaacaa aatcttactc aactacaaaa agatttttca gcacaccaat
     3001 tagaaaatca aaaagcaaaa caatctatga taaatgctca atctgagcta agacgactca
     3061 attcacaact gaatgtattg caaaaatatg tgaattctcg tcgcttaggt tactatactc
     3121 agcaggcagt tttagaacaa attagcatta ttcaaaataa aattaaacaa acacaaacaa
     3181 tatttaatga cgctaatgca actgtaaaac tcacagatca aaagctagaa gaagccaaat
     3241 tagctctagg ctctgtaaac gatcttgtat taataaaagc ctctgctcca gcaatgcaag
     3301 caactaatca agatacgagt atgatgaata ttattcaagc agattggata agccaatacg
     3361 ctaacacagc actttctgaa ctctcggcac aggctaattc tgctctgcaa atcagtaata
     3421 gcttagatcg ccaactcttc aaacaaagcg ataaattcaa cgtatggagc agcgtcgaac
     3481 atcagaaaac cgagcataaa tcagatttat accgcccgta taaacaacaa accaacctga
     3541 cccaactggg catacaaatg ccgatagata acggtttaat gtttggagtt gcattatcta
     3601 aaaaccacgc taacgcggaa tttaacgagg gtgtaaacgg taaatcgaat ctactaatgg
     3661 caagcctata tggtaagtgg caatctcaac aaggcacttt tatcagcctt gatggcagct
     3721 acggtaaagc aaaaaaccaa ctctacctat ttggtgaaaa ccactttacc cgccgaattt
     3781 cctctattgg tgctaacatt ggacatcaat ttgacctcgc aggagttcaa attcagccaa
     3841 caataggagc aagatactac catttcagcg gccaagacta tacactagga ggagcgaaaa
     3901 tcagctcacc aaatacccac tttatgacat atcaagcggg tctaaaagct agtaaaacct
     3961 tttcattgga tgactggaaa gttgaaccaa gcattacaac ccactatgtg gatgcaagta
     4021 acaaacgctt agcagtaaac gtcaataata acaatatcaa ccaacgtttc ggtcgctatc
     4081 tgaaaaccga agctggtatc cgatttgaac ataaccaatg gcaattcgac ttacacgctg
     4141 gtttcattaa cggcaacgaa atcaaaaaac aacattttgc tggtgttaag ctaggatata
     4201 gctggtaaga aaaagcccct agaactattt ctaggggctt tttctactct taaaaagagt
     4261 atctaacttg ccttattttc taaccaattc ttaataaaat ctgctattcc cccaatatta
     4321 ttaatatcca accaattttc tctctcaagc gggtaatccg ttgcggtggc aatcgtccat
     4381 tggtctagct ctggcaatgg tttttcaatc cctttgcggt ggagctgaat ttttggcaag
     4441 gtttcgtgtt taaagccttc tacgaaaacg agatcaacct cttgcgggtt gaattttgca
     4501 attaattgag aaaattcgac cgcttgtttg gtttctgtca ttaatgccca acgttcatcg
     4561 cacacaatca ttgtcgggtt tgctcctgct tcacgtaggc ggtagctgtc tttgcctttt
     4621 ttatctacat caacgttatg gtgggaatgt ttaatcagcc caacccgaat accgcaagcg
     4681 gtcaattttg ggattaattt ttccaataag gtggttttac ctgtgccgct gtagcctgta
     4741 attgcaaggt tttttacagg gaattggctt actcggctta aatcttccaa tgtattcacg
     4801 ttggtgaatg ccgatttttg ttcggaaaaa tcaactgcca cgcttttttg tgattggaag
     4861 aacgcaagca attgctgttg gtttgagcct aaataggctt tcaaatcttc ttgtaccgaa
     4921 cgatgaatca acgcaaaagt gggatgtgga cgctcaccat catgggcata tgcaatttgt
     4981 acgttattta tccgcaaagc agtttttaat ttttgcaata acagctcagg cataaagggc
     5041 gtatcgcaag gcacaaaaag caaatagtca ctttcaattt gctcaaatcc tgccagcatt
     5101 ccactgagtg gaccttgaaa atcaggcaag ctatcttgat agtaagaaaa agcaggataa
     5161 agctgctgat attgctcaat agaacgattg acattaagcc aaatgtcact aacttgtggt
     5221 gaaagtcggg ctaaaatgtg tgaaataagc ggttttcctt caaaaagttg taaccctttt
     5281 tctaccccat tcattcgacg agctaaaccg cccgctaaaa tcacggctga aatgcgttct
     5341 tctattgttt tactcacagc tttatccctt aaaattttgc aaaaataaga gtaaaagtat
     5401 attatttcgt ttaatttcca acaagttttt taaggggtaa aagatgaaat gcgaacgttt
     5461 agaagagtta ttagagttac ttggcgaaca ttggcgtaaa aatcctgact tacacctcat
     5521 tgatattttg cagcagcttt cagttgaagt gggcgagcct gataatttca aagcgttaag
     5581 cgatgaagtg ttaatctatc agcttaaaat gcgaaatgca ggcaaatttg agcctattcc
     5641 cggcataaaa aaagattatg aagatgattt taaaacggct ttattgcgag ctcgtggaat
     5701 tttaaacgat taagattgtc ttatccgtta gctagtttag catttattat ttatcaacat
     5761 ttttgaagga atcattatga aaaaattggc attaaaaacg gcatttgttg cactttctgc
     5821 cctttttaca tttaactcaa cggcaatcgc tgctgatcca accgcaggca aagaatatat
     5881 cgaagtgcgt aaagcacctt ctgcacaaaa agaagtggtg gaatttttct cattctactg
     5941 cccacactgt tatgattttg aattaagcta caaaatccca agccaaatca aagaaaaatt
     6001 accaagcgat agcaaattag tgcaatatca cgttaatttc ttaggtcgcc aatctgaaga
     6061 tttaactcgt gcttgggcat tagcaatggc attaggtgcg gaagataaag taaaaaccgc
     6121 attatttgaa ggtgctcaaa aagacgcatt caaatcaatg gacgatattc gctctgtatt
     6181 cttagcaaac ggcattacag ctgaacagtt tgatagcggt attaatagct ttgcggtaaa
     6241 tggcttagtg aataaacaag ttcaattagc ggaagacttc caaattcgtg gtgtgcctgc
     6301 attcttcgta aatggtcaat accaactcaa cttagaaggc tttgcagatt cttcatcaac
     6361 gaatgatttc atcaaacgtt atgttgatgc ggttgtgttc ttaagcaaga aataacccct
     6421 taaaatagtt agggttttta caatgctgag taggtaaatc ctattcagca ttttttatat
     6481 gcaaactcgg agaacaaaat gacaaagtta tctatcctaa accttgtacc tattcgtgaa
     6541 gggcaaactg ccaaacaagc ggtcgattct atggtgaaat tagcaaaaca cgcggaaagt
     6601 atcggcattg aacgctattg gattgcagag caccacaata tgaaaaacct tgccagctcg
     6661 gcaacacagc tcctcattca gcatgccctt tctcacactg aaaaattaag agtgggatca
     6721 ggtggcgtga tgttgcctaa ccatagtcct tatattgtgg cagagcaata cggtacgctt
     6781 gaaacactct accctaaccg tgtagaactt gggcttgggc gagcaccagg caccgatatg
     6841 cgaaccgcta ccgctttacg ccgtaatgca caaagtctgc catttcctga tgaaatcagc
     6901 gaactaaaag gttattttga aggcacaaat cctgtgtctg cctaccctgc acaggggttg
     6961 aatgtgccgt tttatatttt aggctcaagc cctgaaagtg cctatttagc agcagaacgt
     7021 ggcttgcctt atgcctttgc ttcacatttc gctcctcgtt ttatggacga tgcggtgcga
     7081 atttatcgca cacactttaa gccgtctgaa gtgttagata aaccctatgt gattttaggt
     7141 gtgaatgcga ttgcggcaga aaccgaccaa gaggcagaac agcttgctac cactcagact
     7201 cagtttttct taaatgttgt taccaatgcc caaaactatt tacaaccgcc cgtcgaatcc
     7261 gatgataaag tgtgggaaaa ttttgtgaaa gcggaaatcg taccgcattt cgggcctgtt
     7321 tcgttccaac aaaatgcgtt atacaaccaa gagaaaaccg ttgttcgcca aatgactgct
     7381 tgttcactta tcggtagccg agagagcgtt gaacaacagc tcaagtcatt aaaagcacgc
     7441 attgaaattg atgaaattat ggcggtaagc tacattttcg atgagcaaaa acagcatcaa
     7501 tcctatactt ggttaaaaga gattgcagat aaggtgtgat atgagcaaaa caatgcaaca
     7561 aaaagccgct gatgcacata atatgtgtaa gctaaaaggc gactctatgt tagataactc
     7621 agaccgccaa attgcctttg aagcagtgta tgatagtgaa gaaatagctg tacaagcggt
     7681 cgaatttttc acacaaaaag caaaatcggt agaaaccgag ccttgcgaca ttcaaagtga
     7741 aatcacaccc attatagatg gctttctgat gaaaatgtgg ataactttca gttgccaagc
     7801 agaagtaatc ttatttcaaa tggcggtgag atagatataa aaatgtagaa gatcaaacct
     7861 aatctgacag tcccccgttt taaattaccg tgtctgtcag attaatttga gcttaaatt
//
LOCUS       DANLUT010000116         7815 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLUT010000116 DANLUT010000000
VERSION     DANLUT010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7815
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            71..1498
                     /gene="hldE"
                     /locus_tag="PXB38_001883"
     CDS             71..1498
                     /gene="hldE"
                     /locus_tag="PXB38_001883"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL5354171.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLDVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVAINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGLVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            1512..2066
                     /gene="pyrR"
                     /locus_tag="PXB38_001884"
     CDS             1512..2066
                     /gene="pyrR"
                     /locus_tag="PXB38_001884"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL5354172.1"
                     /translation="MTREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            2139..3092
                     /locus_tag="PXB38_001885"
     CDS             2139..3092
                     /locus_tag="PXB38_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5354173.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTADINSGKISFEEAAKAHSV
                     DYASGTDGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQLSVNN"
     gene            3150..4016
                     /gene="rsmA"
                     /locus_tag="PXB38_001886"
     CDS             3150..4016
                     /gene="rsmA"
                     /locus_tag="PXB38_001886"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL5354174.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNVRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLEALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(4127..4756)
                     /gene="upp"
                     /locus_tag="PXB38_001887"
     CDS             complement(4127..4756)
                     /gene="upp"
                     /locus_tag="PXB38_001887"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL5354175.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(4781..6466)
                     /gene="fadD"
                     /locus_tag="PXB38_001888"
     CDS             complement(4781..6466)
                     /gene="fadD"
                     /locus_tag="PXB38_001888"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL5354176.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFATTLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(6444..6908)
                     /locus_tag="PXB38_001889"
     CDS             complement(6444..6908)
                     /locus_tag="PXB38_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL5354177.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCAAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(6905..>7815)
                     /locus_tag="PXB38_001890"
     CDS             complement(6905..>7815)
                     /locus_tag="PXB38_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL5354178.1"
                     /translation="STIKTPLAYLTAMSEAHKKSTYELVYILQQGSDTESFRLRHAFT
                     HNKEYAQLLNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYANLK
                     GYAFLDAGKDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVLEE
                     FRVLQLYQSPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTV
                     TGATYQVESEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDI
                     VIIGDVPLQSAKQIMNNIGFKEGAQP"
BASE COUNT         2305 a         1687 c         1545 g         2278 t
ORIGIN      
        1 cgcttgtgct aaaactaata atggcacaag cgtggacgct tgcgccatca tttaacagag
       61 aatattaact atgatgatgc aatactctcc aaaatttaat aatgctaaag tgctggtgct
      121 tggcgatgta atgttagacc gttactggtt cggggcaacc aatcgaattt cgcctgaagc
      181 ccctgtgccg gtggtgaaag tacaagatat tgaagagcgt gccggcggtg cggcaaacgt
      241 ggcgatgaac atcgccagtc ttgacgtacc ggtaacatta cacggcttaa ttggcgatga
      301 tgatgccggg cgtgctttag ataaattact taattcccac cagatccaaa atcattgtgt
      361 ggcgattaat tcgcacccaa ccatcacaaa attgcggatt ctttcccgcc atcagcaatt
      421 attgcggttg gattttgaag agggttttca caatgtagat tctaccgccc tacttgcaaa
      481 actttcgcaa gaaattaccg cttacggagc attaattctc tcggattacg gcaaaggcac
      541 attggaatcg gtgcaacaaa tgatccaaat tgcccgcaat gctaaggtgc cggtgctgat
      601 cgacccgaaa ggcacagact ttgaacgcta tcgtggggca acattgctta caccaaatat
      661 gtcggaattt gaagcggtgg ttgggcattg taaagatgag gatgagattg tcagcaaagg
      721 gttaaaactg attgccgact atgatttatc tgcactatta gttacccgtt cggaaaaagg
      781 aatgacctta cttcgcccga accacgagcc ttatcatctg ccgacccaag ccaaagaggt
      841 ttatgatgta accggtgcag gcgataccgt aatcagtgta ttagccactg cgattgccga
      901 tggcagagcc tatgaagaag cctgctattt agccaatgct gccgccggtg tagtcgtagg
      961 taaattaggg acttcaaccg tcagcccggt tgagctggaa aatgcgattc accaacgcac
     1021 tgccaccggt tttggcttgg tttctgaagc cgaattaaaa gcgattgtgg aagaagcgaa
     1081 aaaacgtggc gaaaaaatcg tgatgacgaa cggttgcttt gatattcttc accccggtca
     1141 cgtttcctat ttggaaaacg cccgtaaatt aggcgaccga ttaattgtag ccgtcaatac
     1201 cgatgcttcg gtaaaacgcc taaaaggcga agctcgcccg attaatgatt tagctgcccg
     1261 tatggcagtt ttagctggtt tagcctctgt agattgggtt gtgccttttg atgaagatac
     1321 accacaacgt ttaatcagtg aaatcctacc tgatttattg gtaaaaggtg gtgattacaa
     1381 gccggaagag attgccggca gccaagaagt atgggcaaac ggcggcgatg tgcgagtatt
     1441 gaactttgaa aacggctgtt ctaccactaa tgtgatcaag aaaattcaag cactataatg
     1501 gtaataagcg aatgacgaga gaaaaaatca ttattgatac cgagcaattt cagcgcacaa
     1561 tatctcgtat ttcacatcaa attattgaaa aacacggtga tttgcaagat gtagtgattg
     1621 tcggcatcaa acgtcgagga gctgaaattg ccgagttaat ccaaaaacgc attgaagatt
     1681 tagctcaaac acgcttgcct tatatggcgt tagatattac gttctaccgt gatgacctag
     1741 acttaattta tcaagatccc gtatttatgg gagccgataa tcagctaaat ctgaacggta
     1801 aaaaagtgat tttggttgat gatgttctgt ttaccggcag aaccattcgg gcggcacttg
     1861 atgcactctt agattttggc agagctgcca gaattgaact ggtgattttt gtcgatagag
     1921 gtcatcggga attgcctatc cgagccgatt atgtcggaaa aaatattcca acggctaaaa
     1981 acgagcaaat tcaggtgcaa acgctctcgt atgatgggat taaccaagtg gtcttagttc
     2041 ctgctgccaa taaagaaagt gcttaaatta agtgaacctt ttcgctaaac ttatctctaa
     2101 ggaaaagtta ctgcttaatt acctccatta ggattgttat aaaaatgaaa ttagtcaaat
     2161 cattatttgc tgttgccgtt gcaacaatga gtcttaccca aaccgcccac gcatttgaag
     2221 aaagagtggt ggcgttagtg aatgataccc ctattatgca aagccaggtt caacgtgtgc
     2281 ttggcaagaa aaaggcgaca gaaactgctc aacgtgcggc tattgatcaa gtgattgatg
     2341 atatgttggt gcaacaggca atgaaagaag ccggcgttaa agtcagccca gctgcggtaa
     2401 accaagcggt tgaaaatgtg gcaattcaaa acggtattac ttacggtcag ttattagatg
     2461 cgttagatta tcaaggtatt acacttgaac aattcaaacg taatattgct caacaaatgg
     2521 caatggaaca agttcgccat atcagcatta gcaaatcgat tcaggttgca ccacagcaag
     2581 tgcaagctct ggcgaaagag ttaatggcga aagataaagc agcaggcaaa ttgaaaaccg
     2641 tttccggcaa agagcatcga attagtcata ttttgctaaa aaccaacccg attttaaatg
     2701 atgctcaagc caaagcaaaa cttagcagct taactgctga tattaactca ggcaaaatca
     2761 gctttgaaga agcggcaaaa gcccattctg ttgattacgc ctcagggaca gacggtggag
     2821 atttaggttt taacttctta gaaatttacg atccggcatt tgcgaatgtt gcatcaaaaa
     2881 tcaaaccaaa ccaaatttct gctccgttta aatcgcaatt tggttggcat attttaaaag
     2941 tcaccgacac tcgtaacgga gacagaaccg aagatgctta ccaccaacgt gcttatcagc
     3001 aactggtgaa caagcaagcc gaagaagcct ctaaagattg ggtaaaagcg cttagaaaaa
     3061 ccgccaatat tcaattgtcg gtcaataatt aaaattttta agaacctcgc ataatgcggg
     3121 gttcttttct tatttcaaaa aggataacaa tgagttctac aaattccaaa aaacatttag
     3181 gtcataccgc tcgtaagcgt ttcgggcaaa actttttgca cgatatgaac attattcaca
     3241 gcatagtttc agccattaac ccgaaaaacg gacaattttt attagaaatc ggtccgggtt
     3301 taggagcatt aaccgagccg gttgccgaat tggtagataa actcacggtg gttgaaattg
     3361 accgtgattt agcagagcgt ttacgccacc acccgttttt aaaccaaaaa ctcaccatta
     3421 ttgagcaaga tgccctacgc tttaatgtcc gtgactattt taaccaactc aacttagacg
     3481 aagactcggt gcgtgtgttt ggtaacttac cttacaacat ttctacgccc ttgatattcc
     3541 acctgctgac ctttcacgac ttaattcaag atatgcactt tatgttgcaa aaagaggtgg
     3601 tgaaacgttt atgtgccgcg ccaaacagta aagcatacgg gcgtttaacc attatggctc
     3661 aatactattg ccaagtaatt ccggtgctgg aagtgccgcc aaccgccttt aaaccggcac
     3721 caaaagtcga ttctgcggta gtgcgtttag tgccttataa ccaactgcct tatccggcaa
     3781 aagatgtgta ttggctcaat cgggtcacga ctcaagcctt taaccaacgc cgtaaaacct
     3841 tacgcaatgc tctttcaacc ctgtttagtg cggagcaact ggaagcctta ggcgttgatt
     3901 taaccgcccg agcggaaaac cttaccattg ccgattatgt gcgtttggct aactggctac
     3961 acgacaaccc gccggcaatt gatacaaccg aagaattggt tgatgaagat tgctaatcaa
     4021 taaattacaa gcggtcattt ttctaccaag atttgcaaat ctttagtgaa aaatggccgc
     4081 ttgtttaaat cagctttact tgttttgctg ttacttagtt ttgatgttac ttggtgccga
     4141 aaattttatc ccctgcatcg cctaagcctg gaatgatata gccgttttcg tttaagtgac
     4201 tatcgattga ggcggtgtag agttcaacat ctgggtgggc ggcttctaat actttaatcc
     4261 cctctggagc ggcaactaac actagcactt taatctgctt acagcctgct tttttcagga
     4321 ggtcaatggt tgctaccatt gagccaccgg ttgcaagcat tgggtcggtg ataatggcta
     4381 aacgctcatc aacatcgttg gctagtttgg agaaatacgg cacgggcttt aaggtttctt
     4441 cgtcacgata aatcccaacc acactaattc tggcacttgg aatatgctct aacacaccgt
     4501 ccatcatacc taagccagca cgcagaatcg gcacaacagt cacttttttg cctttaattc
     4561 gctcaaccgc aattttctct ccgctccagc cattgatctc cacactttcc atttccagat
     4621 ctttggttgc ttcgtaagta agcagactac caatttcatt cgctagctca cggaaatctt
     4681 tggtgctgat ttccgcttca cgcattaagc ccaatttatg ctttacaagc gggtgtttta
     4741 cttcaacaat tttcatttta agctccttaa ttagggtaat ttaagcctta ttcacctttg
     4801 ctaattcttc gtctcttaac actcggcgaa gaattttacc aacattactt tttggtaatt
     4861 cgtcacggaa ttcgatgtct cttggaattt tgtagccggt taagaattga cgacaatagg
     4921 ttctcaattc atctcgggtt aaactttcat cttttttggt tacaaaaatt ttaatgcttt
     4981 cgccggaagc ctcactcggc acaccaatcg ccactacttc attcactttt gggttttggg
     5041 aaatcacttc ttcaatttcg gttgggtaca cattaaaacc ggagacaata atcatatctt
     5101 ttttacgatc aacaatgcgt aagttcagat catcccccat taccacaatg tcaccggttg
     5161 ccatccaacc atcttgtagc acttgtgccg tttcatcagg acggttccaa tagccttgca
     5221 ttacttgcgg ccctttcacc accagctcgc cccgttcgcc gagtggtact tctttgcctt
     5281 catcatccac aatacgaatg tcagtatttg gcactggcac gccaatagag ccggaatatt
     5341 ccaccgaatc gccacgggtt gcactaatca gcggagaaca ttctgtcatt ccataacctt
     5401 cgataatatg tacgccggtt aaatcgtgcc agcgttttgc cacgctagat tggatcgctg
     5461 caccgccacc tacacttaat tttaggtgtg aaaaatcaac ctctttaaaa ctttcgtgat
     5521 taagtaatgc attaaacaat gtatttaccc cagtaatcac tgaaactttg tactttttta
     5581 attctttaat aaagcctgga atatcgcgcg gattagtaat taataatccg gtaagtccta
     5641 attcgataaa gagcaagcaa ttcatcgaaa gtgctaagac gtgatacagc ggtaaaggta
     5701 ccaatccaat catattggca gaattaccca acaatggctc aacaatccat tttgcctgca
     5761 tcatattagc aattaagttt tgatgagtca gcattgcccc tttcgctaca cctgtagtac
     5821 cgccagtgta ttgtaaaaag gcgagatctt ggctgacaat attcggtttt acatattgac
     5881 gctgtttgcc aatgcttaag gcttcacgga agctgaccgc atgtggcaat ttatatttcg
     5941 gcactaattt tttgatgtat ttcaccacaa aattgactaa ggtgcgtttg ccgaatgaaa
     6001 gttggtcgcc cattcgagtc aaaataacgt gcttaatctc agtattaaag acaatttttt
     6061 ctaaggtagt cgcgaagttc gagactatca caatcgcttt cgcaccactg tcatttaatt
     6121 gatgttctaa ttcacgcggc gtataaagcg ggttgacatt caccaccaca agcccggcac
     6181 gtaatgcgcc aaataaagcg atcggatatt gcaataaatt cggcatcatc aatgcgattc
     6241 gatcaccttt tttcaggcgt aattcatttt gcaaataagc ggcaaacgag cggcttcgtt
     6301 cttccaattt acggaacgtt aaaacctgcc ccatattaat ataagctgga atatcagggt
     6361 ggcgttgtat cgctgcttca aacatttcca ctaaagattc atattgatct gtttcaatcg
     6421 tttttggtga ataaggcgga taattattta gccatatttt ttccattata gtctcctaaa
     6481 accttaccta aaaagatagg tgaaaaattt gcttgtttgc tgtgtttatg aatcaatttt
     6541 cttacagccc agaatgttat acctgttgaa agcaacatta taaataaaac aataagctca
     6601 tttgcaaaaa attgcgaaaa tccgaccgct gtcatcacaa gaaccagcag aggaatgcca
     6661 taaattaaaa acacgctttt gagcaagata ttttcagcta accctagttc aaccttatcg
     6721 cctactttta ggggttcatc tacctcaata cgaaaacgag ggtcaatttt ttcacctgct
     6781 aatgctgata atgctttgct gccacaagca gactgagctg cacagccacc acagctactt
     6841 ttagcataac attgtacaat agccacacca ttctgatatt ccactaccgt agcctgttcg
     6901 atcatcatgg ctgagctcct tccttaaaac caatattgtt cataatttgc ttagccgatt
     6961 gcaacggcac atcaccaata atcacaatat ctctatcatt aatcgtttga tttaaaatcg
     7021 ttaatttacc ttgttgccaa gcgtactcat taaaactcac gccttggcta ggcataatat
     7081 aaatagttaa tgtagataaa ccatcactat atactctgct atctacatac tcactttcca
     7141 cttgatatgt cgcacctgtg actgtttgtt gctgaattaa cctaaaccct gtcggcaacc
     7201 acttcacctg ccaaccatca gacttaggaa attcttcttt tttcactgtc gttaatgttg
     7261 gtaacattag tgattctatt acatttgcaa tcctatccaa ttctggagat tgataaagtt
     7321 gcaaaactct gaattcttct aataccaaat tatccatatt caagacttgg cttttaagta
     7381 ataaatgtgt ttcttcatca atccatagta tataggcata tcttaaagta tcatttggct
     7441 tcatacgaat tacctttgta attcggtcag aaatacgatc tttaccagca tctaaaaagg
     7501 cataaccttt taaatttgca taatctgtgt aaagtacatt agggaggtta tctaaaatct
     7561 gtgaactatt taaactaaaa ggacgaaaat tataccccaa atagctgacc ttgttatttt
     7621 ttaaaataat ttcttctcgg ctgtgatcta aattcagtaa ttgggcatat tctttattat
     7681 gggtaaaagc atgacgtaaa cggaaagatt ctgtatcact tccctgttga agaatataaa
     7741 ctaattcata agtggatttt ttatgtgctt ctgacatagc cgttaaatat gctaatggtg
     7801 ttttaatagt tgatt
//
LOCUS       DANLUT010000117         7739 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLUT010000117 DANLUT010000000
VERSION     DANLUT010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7739
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            192..1652
                     /gene="xseA"
                     /locus_tag="PXB38_001891"
     CDS             192..1652
                     /gene="xseA"
                     /locus_tag="PXB38_001891"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL5354179.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            1965..2050
                     /locus_tag="PXB38_001892"
     tRNA            1965..2050
                     /locus_tag="PXB38_001892"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1999..2001,aa:Leu,seq:caa)
     gene            2144..2968
                     /locus_tag="PXB38_001893"
     CDS             2144..2968
                     /locus_tag="PXB38_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL5354180.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLKTL
                     LIDTDTQPTLSSYYELAYQVPGGTYEFLHFKDVEPTHIISKTTIPNLDLIQSNDPSNK
                     ISPMLRDSPNGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETIRQLCALLMPQFAQSHFSE"
     gene            2980..4341
                     /gene="dnaB"
                     /locus_tag="PXB38_001894"
     CDS             2980..4341
                     /gene="dnaB"
                     /locus_tag="PXB38_001894"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5354181.1"
                     /translation="MSNPNKPTTHLYSAEAEAAVIGGLLLDNTLFDDVIGKINSADFY
                     FGVHQALFKGITDLIEVGKPADILTLDEYLKQKNLLKEIGGFAYLAEVSKNTPSAANV
                     GAYADVVLLHSKHRQLLKLGQFIVDQTQTAKTPEKLESVIDEVEKKMTEFSLSDNTKS
                     ATDLSDIFASMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFLAMRARVSLQDIRQADRLDDED
                     WGKLTMAMGHILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMECPVYALSQLNRSLEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEIYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            4350..5999
                     /locus_tag="PXB38_001895"
     CDS             4350..5999
                     /locus_tag="PXB38_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5354182.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIVADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLNKSLSARELATELEGDGYIIHYTLANKMERCVLYLYPHIPEVLF
                     KGLGHTQIDKLLAIRNNAEEVWAAHQFDTDINFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALDGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQA
                     AKFEPVIKNENKSVATEPAKNVIDDVIDDNESDDEQNNAITDLSQLDSPLLDKQDNQT
                     EDYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEA
                     YSLALDIAESVGIDHLVEHVVKQPVDYTYAMKPTDSELSPSVLTLYSFLSMLQTAKHK
                     DENNCVLDSNFLFELDDITLVKLFRLIRVSRHIHQQGGKND"
     gene            5992..6549
                     /locus_tag="PXB38_001896"
     CDS             5992..6549
                     /locus_tag="PXB38_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL5354183.1"
                     /translation="MIKTITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     LDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQKYKQKMESLDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWQSKHK"
     gene            6722..>7739
                     /locus_tag="PXB38_001897"
     CDS             6722..>7739
                     /locus_tag="PXB38_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354184.1"
                     /translation="MFSSINNPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLMAD
                     KTKWHYVSHLDCLQNRYKTYQQQQQMKDKPLSQAEQELSKIQQNILTSAMEVRDFDEE
                     VRKKSSEILTSNKEVRDENDDKSLILDLLPLGKSDVLYSTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEAQQRIIQKQDVRKPKGYLYTLIQRAKQG
                     EFKPY"
BASE COUNT         2508 a         1526 c         1531 g         2174 t
ORIGIN      
        1 taacccgaag gtcgctggtt caaatccggc ccccgcaacc acattccaaa ccctcgatag
       61 tgaatcacat cgagggtttt cgttttattt gccaaaaaac agcaaaaaat aaccgcttgt
      121 tgactgcaaa agcttcctct cgctttcatt tctcgttaca cttctactac atttacgctt
      181 ttttgattat tatgagcaat attttaactg ttacccaact caactattcc gtccgccatt
      241 tgctcgaaat ggaaatgagc catatttggc taaccggcga aatctcaaat ttcagccaac
      301 cagtttcggg gcattggtat ctcactttaa aagatgacaa agcacaagtg cgttgtgcga
      361 tgtttaaaat gaaaaatgta agagtgaatt ttcgcccaca aaacggtatg caggtgctgg
      421 tgcgggcaag tgttacactc tatgagccac gaggtgacta tcagctcatt attgagagta
      481 tgcaaccggc gggcgaaggc ttgttacagc agcaatttga gcaacttaaa gcaaaacttt
      541 cagctcaagg cttgtttgct caagagcata aaaagccaat tcctactttt gttaaaaccg
      601 ttggtattat tacctcctca agcggagccg cattacaaga tattttacat attttgcaac
      661 gacgagatcc gagcttatca gtggttattt acccggctct cgtgcaaggc aaagaagcaa
      721 cgcaagatat tgtgaatatg attgaactgg caaaccgccg caatgagtgt gatgtattaa
      781 ttgtcgggcg aggtggcggt tcattagagg atttatggtg tttcaacgaa gagagtgtcg
      841 cttatgccat ttatcattca caaatcccga ttatcagtgc ggtgggacac gaaaccgatg
      901 tgaccattgc tgattttgtt gcagatttgc gcgcaccaac gccttcggct gctgcggaat
      961 tagtcagcag agatcaaaat gaattgaaac gccaattaca acatcagttt gataaagtga
     1021 atttagcctt tgaccgagtt tggaaccata aatttaaccg tttccaacaa ctccccttac
     1081 gcctgaatgc tcagcatcca agcaaacaaa ttcaatcgca acagcaacgt tttgattata
     1141 tggaataccg cctcgagcag gcaatttatg cacttgttgc agccaaaaag caggtgggga
     1201 aagagctaaa tgtccgttta attcaccaac atccgcaaaa gcagattgaa cgccaatccc
     1261 aaatgcttaa gcaattggag ctgaaactcc attggcaaat ggagcaacaa ctcagcaaaa
     1321 aacagcaaaa atggaaaaac attacgcaac ggtttgaacg caacccgcta ccttatcaac
     1381 tttatcagca acaaacgatg gtggcaaaaa tgtcgcaacg cttggcttat tctatcgaaa
     1441 aaataatgct gaaagagcag cgacattttc aagagttatg cactaaactt gatggactta
     1501 gcccattgaa aatcttgacc agaggctact caattaccca aactaaagac ggtaaaacgc
     1561 ttacttcaac agaaaatatt gaacgtggtg aggctattat cacccaacta aaaacaggaa
     1621 aaataataag tcaagtagtg gattttttgt aggggaaatt ttgaacgctg ccaattttta
     1681 aaattattta tagtaaaatc agtaggtaaa atatttataa acagggttgt tcacttagtt
     1741 atccacaggt gatgtgcata actatttttg taaagatgaa ttgagtgctg atttttaaat
     1801 caaccgattt caaaaggcat ttttacgctt gcacaagcgg tcatatttcc ctataatcgt
     1861 gcaaaaatta agccagtgtg gcgaaatcgg tagacgcagc ggattcaaaa tcttttgcgt
     1921 aaactgataa aacatacagg caattgaata aaaatgcact ctcagcctga gtgatgaaat
     1981 tggtagacat gatggattca aaatccattg gtgaataacc gtgtcggttc gagtccgacc
     2041 tcaggcacca ttcaactgcg ttcctttcaa ataatactca ctctaaatat acagtttata
     2101 atgccaatac tccttaactt caactttgtt aagagagtaa attatgaaac cattacaaaa
     2161 cggtacaaac aaacctttta ccattactat tgcttcgacc aaaggaggct ctgctaagag
     2221 tacgaatgcc gctaacattg gtgcattctg tgcagaacac ggtcttaaaa cccttcttat
     2281 cgatactgat acccaaccga cattaagttc ctattatgaa ctcgcatatc aagttccggg
     2341 cggaacttat gaatttcttc attttaaaga tgtagagcct actcatatca tttctaaaac
     2401 gactattcct aatcttgact tgattcagtc aaatgatccg tctaacaaaa tcagcccaat
     2461 gctgagagat tctcctaatg gagcattacg tttcagttta ctactacaaa aaatagaagg
     2521 ctacgatgtc atcattattg atacccgtgg aacaagagat attactgtcg atatgtctgt
     2581 gctggcagct gatgttttat tctgccctat tcttccgcac attctatctg ctaaggaatt
     2641 tatccgtggc acgattggaa tgtatcaaga tttagaaact tttactgcat ttggctttac
     2701 tctcccaccg ctgaaagcga tgattaactg tgttgatcat accaaggatg tcaaattagt
     2761 ctctgactat ctgcacacgt tgttccaaaa tgagtttgat gaaaacaaaa cattactgga
     2821 attttctgtg cctgatcgtg tggcataccg agaagcggca actttttcaa aaccggtcta
     2881 tcgccagagc caagctgaat atgaaaccat tcgtcagctt tgtgcattac tgatgccaca
     2941 gtttgcacaa tctcattttt ctgagtagtt gggggattta tgtctaaccc aaataaacca
     3001 accacccatc tctattcagc agaagctgaa gccgctgtca tcgggggatt gttattagat
     3061 aacactctct ttgacgatgt cattggcaag attaattcgg ctgactttta ttttggtgtg
     3121 catcaagcct tattcaaggg gattacggat ttaattgagg tggggaaacc tgcagatatt
     3181 ctcacattag atgaatacct aaaacagaaa aatctgttga aggaaatcgg cggttttgcc
     3241 tatcttgcag aagtttcaaa aaacacccct tcggcagcca atgttggagc ttatgctgat
     3301 gtcgttctgc tacatagtaa acaccgacaa cttttaaagc tgggccagtt tattgtcgat
     3361 cagactcaga cagcaaaaac accggaaaaa cttgaatcag ttattgatga agttgagaaa
     3421 aaaatgactg aattcagcct ttctgacaat accaaatctg caacagattt aagtgatatt
     3481 tttgccagta tgctctctcg tatggagctt tcggctaaaa atggtgatcc tgtgactgga
     3541 acaccgacag gtattcaagg catcgatgaa gcgactaccg gtgggcaacc gggtgattta
     3601 attgtgattg gtgcccgtcc ttcgatgggg aaaacggcat tttctcaaac tattgcctac
     3661 cacacccttg aaaaatttga gtctgctcct gtgttctatc acagtatgga aatgccggca
     3721 gatcaaattt tacaacgttt tttagcaatg cgtgccagag taagtttaca agatattcgc
     3781 caagcagacc gcttggacga tgaagattgg ggaaaactaa cgatggcaat ggggcatatt
     3841 cttgaacatt ggaaaaatcg tttagtcatt gatgatgaag gtagccttac ccctcaaaaa
     3901 ttacgcacca aagttcgaca aaatgctcgt aaatatggaa aaccggccgc aattttcatt
     3961 gattacattc aactaatgca aacctcgcaa cgttatgaaa atcgcaattt agagattgct
     4021 aacatctctc gttcgctcaa attactggca aaagagatgg agtgcccagt gtatgcactc
     4081 tctcagctta atcgctcttt ggaacaacgt gctaacaaac gtccgatcaa ctctgattta
     4141 cgagaatctg gttctcttga acaagatgcc gatgtcattt tattcatcta tcgagatgaa
     4201 atttatgatg cggattcccc ctttaaaggt accgcagaaa tcattatcgg taagcaaaga
     4261 aatggaccac ttacttctgt aatgaccaat tttagaagtg aatttgctct atttgaaaac
     4321 cgaacaaaca caacgcatta ggatagatta tgacaaaaga tgaaaaaaga ctggcagcga
     4381 tagcgaaagg attaaacgtt tcgcctattt cgaatactgc tccatcctat caaacagcaa
     4441 caccaacgca ttatagtagc gatgttgaat atattacagt gacgctagat aaattacgtc
     4501 catatgagca taaccctcgg aaaacccgta accctaactt cgagatgatc aaagagtcta
     4561 ttcgtcgtcg aggattagat cataagccga atatcacccg tcgtccggga gaagattttt
     4621 acattgtcgc tgacggtggt aatacccgta ttcaggcact taaagagctg tttactgaga
     4681 ccaaagatcc aaaattttgg tccatcagtt gtcaatataa accttggcaa ggtgatactg
     4741 ccgacagtgt cgaagctgaa ctcaatttac ttatcgggca tttgattgaa aatgataccc
     4801 gtgcggattt gtcatttatt gaaaaagctc ttggtatttt acaggcgaaa gaatattacg
     4861 agaagaaatt gaataaatca ctttcagcaa gggaattagc tactgagtta gagggtgatg
     4921 gctatattat ccactatacg ttggctaata aaatggagcg atgtgtactt tatctatatc
     4981 cccatattcc agaagttcta tttaaaggtt taggacatac tcaaatcgat aagttattag
     5041 ctattcgtaa taatgccgaa gaggtatggg cagcccatca atttgatact gatattaatt
     5101 ttgaatcgct ctggtcagaa aatttatcca aatttaatga ggctacacca tttcaagcaa
     5161 aagaattcca aagtgaattg attacggcaa tggttgaagc tttagatgga aaagtgagtt
     5221 ttgaaacact ttatctggat attgacttag atgaacaaaa attcaaaaaa atagcggcta
     5281 aacaacaaga aattgataat ttagttgaaa aaacagtcga tcaaatcaat accagacagg
     5341 aacaacaagc agcaaaattt gaaccagtta tcaaaaatga aaataaatct gttgccacag
     5401 aaccagccaa aaatgttatt gatgatgtaa tagatgataa tgaaagtgac gatgagcaga
     5461 ataacgccat tactgattta tctcaattgg attctccatt attggataag caagataatc
     5521 aaactgagga ttatctctcc caaattgctc ataactttgg actcacaccg ggaatgagta
     5581 ttcaagaaca gcgagagcaa cgagcagaag ccaatggact tacttttgct tgtgaaggtc
     5641 gccagccggt tgaagatatt tggttgattc atcctgctcg tcaatatcgt tcagaggcgt
     5701 attcccttgc cttagatatt gcagagagtg tgggcattga ccacttggtt gaacatgttg
     5761 tgaaacagcc tgtggattac acttatgcaa tgaaaccgac agatagtgaa ctttcaccgt
     5821 ctgttctaac actctattca ttcctttcaa tgttacagac agctaaacat aaggatgaaa
     5881 ataactgtgt cctagattcc aacttcctgt ttgagcttga tgatattacc ttagtcaaac
     5941 ttttccgtct cattcgggtc agtcgccata ttcatcaaca aggaggaaaa aatgattaag
     6001 acaattaccg taaatgaagc attgattggt aacgccctgc tcaatattaa agaaggaaat
     6061 atccatcctt gtttaaaaat gggattttct gaggaacaac taaaagcgat caataatctc
     6121 agtcttgatg aaattatgga tatcagcaac tctgttgtgt cttttgccaa agtggagatt
     6181 aatcacgaaa ccttttggaa attgttggcg attgcacaag ctaataccca acaacgacag
     6241 attattgacc gagcattatt gcttggagct tctattgaaa tgttacatca gtattttggt
     6301 ttatcaacct ctgaagtttc tgcacgtcgc caattacttg gtattgaaga aaagatgggg
     6361 cgaaaagcag ccgcaagtga tgaagaatct acccatattt gggagatttg gcaaaaatac
     6421 aaacagaaaa tggaaagcct agattcacaa gaaggcttag agctcctgtg cctgattgct
     6481 gaggaaggta atatgaattt aacggttgtc tggaaattgg tttccgagtg gcaatcaaaa
     6541 cataagtaaa aaataaatgc cccaaagttg gcgctttggg gcattcgata ttggagtctt
     6601 atatctctat tctatggctc atagactttt aggagaccga ctttgcatga gtcctgagta
     6661 ttatagccat aggatagaga atagcaagag aaaaactctt taatccgaat ggagagaaac
     6721 aatgttcagc agtataaata acccaacaga acacggattg ctattttttg gcaaccaaca
     6781 cgaaacagta cctactcgct tattacaaga tccctgtcta acaccaaggg caaaatttgc
     6841 atggcagttg attaagtgta atgttcaagc ctttcaaggt ggcttatttc cttcctatga
     6901 gacactcagc aaaatgttgt ctgatagacc ctatgctgag gctaaattat cggaaaaagt
     6961 agtgactcaa accctttatt tactccgtct tacccgatgg ctgacattgt gtgaaaccgt
     7021 acgtgatgag cgaggttatg tgcaaggtaa tgtgtatatt ctgcatgatg agcctgtacc
     7081 cattttagat gctattcagt tgaatagcga ctatctctct ttcttagata aatgcaccaa
     7141 gcataaagat agtcttatta atggtgtagc aaatcatatt gtagaaagtc tgatggcaga
     7201 taaaactaag tggcattatg tctctcattt agattgtctg caaaatcgtt ataaaacata
     7261 tcaacagcaa caacaaatga aagataaacc tctttcacaa gctgaacaag aattgagcaa
     7321 aattcaacaa aatatcctga cttccgctat ggaagtcagg gattttgatg aggaagtcag
     7381 gaaaaaatcc tcagaaatcc tgacttccaa taaggaagtt agggatgaaa atgacgataa
     7441 gtccttgatt ttagacttac ttccattagg gaagtcagat gtactgtaca gtactttata
     7501 tattaataag tactgtactg gggaacctag cgaaattact tggccacaag aaatcccact
     7561 aacctcactt gaacaaaaac tcactgcaca agcaatgaaa gggttagatc tggggttatg
     7621 ccaagctatt ttgctggaag cacaacaacg cattattcaa aagcaggatg tgagaaaacc
     7681 gaaaggttat ctctatacgc ttatccagcg ggcgaagcag ggtgaattta aaccctact
//
LOCUS       DANLUT010000118         7563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLUT010000118 DANLUT010000000
VERSION     DANLUT010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            112..2259
                     /locus_tag="PXB38_001898"
     CDS             112..2259
                     /locus_tag="PXB38_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5354185.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAAKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGVQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2272..3390
                     /locus_tag="PXB38_001899"
     CDS             2272..3390
                     /locus_tag="PXB38_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5354186.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDVHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3451..4713)
                     /gene="rho"
                     /locus_tag="PXB38_001900"
     CDS             complement(3451..4713)
                     /gene="rho"
                     /locus_tag="PXB38_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL5354187.1"
                     /translation="MHLTQLKNTPVSELVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TITPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(4899..5846)
                     /gene="cysK"
                     /locus_tag="PXB38_001901"
     CDS             complement(4899..5846)
                     /gene="cysK"
                     /locus_tag="PXB38_001901"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL5354188.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIASSDPERYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
     gene            complement(6020..7516)
                     /gene="pepA"
                     /locus_tag="PXB38_001902"
     CDS             complement(6020..7516)
                     /gene="pepA"
                     /locus_tag="PXB38_001902"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL5354189.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIIDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
BASE COUNT         2175 a         1517 c         1629 g         2242 t
ORIGIN      
        1 tttgaatatt attaataaaa tagcacaaac aaattttatc cttaatcaac tttgttggtt
       61 agatgtaaaa agttataaat acttcttcac ccaatataag gagaaatcat aatgaaacgc
      121 ttgcgttatt cttatcttgc tttgatatta ggttcagcct tacctttatc ggcttatgct
      181 gacggttatt taagtaacga taatattcgg caatttgatg cccgttttaa ttttttcctc
      241 gcaaatccac tacctgcgcc tattgcaaaa gcagatgggc gtggtgaagc gattgagaat
      301 ttggtggtga aatatgcatc agattatctt aatgatatct atcttaaaga ggatgttatt
      361 cgttttcgcc gttggcagtg gcaagatctc tatacgtcat tggatttaaa aacgaaacaa
      421 aagcccgatt atttaaatac ttaccgatta caggcggaag cgtactttat caataagcaa
      481 taccaagaag cattatctca actggatcaa attctgcggc gtaaccctaa tgatgttcat
      541 gcaatggcaa tgagtgtggt tgcaagtcgg gtattggaaa atcctaatac tgaagccgag
      601 cgtttattag cgctttatca aatctctcca agtattgcgc aaaaggtgca gcaatatcta
      661 cattttacag acactatgct tgctgccagc tatggtagtg agcctcaaac aacaatgatc
      721 cccgacacca tagcggtatt tgggcaatcg cctaacccag acggtactcc aagcaaggga
      781 ttattgcaac gtcttgagaa aaccaaagaa atggcagcga aatttccgaa tgcaaaaatt
      841 attttaagtg gtggacctgt tcgttatatc tatgcagaag cggatgtaat gaaaaaatgg
      901 ttgatagaga atggcgttga tgaaagcaga ctgttgcttg atgatgtggc acgagatact
      961 ccgggaaatg ctgtcggtat cattgatttt atgaaggaat atggaggtag aaaagtattg
     1021 gggatcggta cgatcttaca tttaccgaga gcaatgtctg tattgaaaag ctatgcggat
     1081 tccattggat atgaattgga aattgattct gccggaggcg gttctcctcc taatgaaaaa
     1141 aataaaaaag gtgaagctct ttatacattt gttaatgttg ctcgtgcaat ggggttattt
     1201 accttgggcg attttgagaa tttgcttgcc aaagaacaag ctgaaaaaga acaaagagaa
     1261 gcgttggaaa aagcacagca gaattattta gaaaaattgg tagctgagcg agatcaagca
     1321 gtaaaaaatg cagaaaattc tgcaaatgag ctggaagtag ccagacaggc gttagaaaca
     1381 gcaaaacagg ctcatcagca agctgaagag gaattgaata aagaacttag taaaacgcaa
     1441 gagcagttaa aacagagtac ggaagccctt agtcgtttaa taataaagca gaacaatcct
     1501 ttttccgagc attatgttgt acagcttaat ttgatggaac aagcaactta tgatctgtac
     1561 cgtaggttag cagaaataga acatacacaa gattggaatt tatggctttc ggatagtcta
     1621 tccaaatatc gtttaaaaaa tcgttcaacc gaagactatc acttattaca tatcgggcta
     1681 gatcatcagg tttcccataa ttggtctatt ggtggagtat ttggtatcag tcaggggcaa
     1741 attgagaata ggacgcataa agtgaaaggg acatctgctg gtatttatgc tggttatcgt
     1801 cctacaagtg gtctgttttg gacaaatttt tttaattaca gtcattttac taatcaatct
     1861 ggtgtaacaa aacgtgataa taatgcatac agtctgagta gtgaaattgg aagaaatatc
     1921 gtgatgagtc atcaatggca aattacgcca aagctgcaat taggctgggc aaaagctgga
     1981 tcagcacgaa tgttttgggc tgggacaggg ctacgtttag gaaaagtgat tgaactcaat
     2041 gcaatcaaac ttaaacctta tgctgatatt agctatcgtt ttcgaaatcg tcatattgat
     2101 accttagata gtttatctga tcgtcatcgg aatgtaatca gtattggggt acaagcagtt
     2161 ggaaatcgcc attattttgc aatcgaagga tcaatgttac acggggatgc attgaagcgt
     2221 tcatacggat tacacgcaaa ttatcactat caatggtaaa taggagcctc tatgaaaaaa
     2281 atcaaaacaa ccctttctgc ccttgcttta agcctttctt tgataagtgt aaatagctgg
     2341 gcgataccag ctgattattt gagccaagac aatatcagtc aatatgataa ggcgtttaac
     2401 tttgtattag caaaagtact gcctgcacca aaaggtaaag aagatggtcg aggagcgccg
     2461 attgagcatt tagttattca atatgcgcca gactatgttg atgaccctta tctaaaagag
     2521 gatgtgctga atttccgccg ttggtattgg caagcgatgt atgcttcgct tgatcagaaa
     2581 gttaaagaga agccgaccta ccttaacact taccgtttac aagcagaggc gtatttcgtc
     2641 aataaagagt atcgggaagc actttctcag ctcgaccaaa ttttgcgcca aaacccccgt
     2701 gatgttcacg ctcttgcgat gacagtatta gcttcaaggg tgctagaaga tactgaacaa
     2761 gaaacggctc gtctttctgc actgaaacag cttgctcccg aagtcgcaca acgaatgaca
     2821 gacttttttg cctttaccga acaaacgctg gcggcaagct acggtaatga accacagaca
     2881 gcaatgatcc ctgatacgat tgccgttttt ggttctacgc caaacaaaga cggcacacct
     2941 tcgccgctgt tgttagatcg attacagaaa accaaagaga tggcacaaaa atttccgcaa
     3001 gcaaaaatta tcgtcagtgg cggtgctgtg aaaacggaat ttgctgaggc tgatgtgatg
     3061 gcaaaatggc ttagcgaaaa tggtattgaa aaagaccgtt tgctacttga tcctgttgcc
     3121 agagataccc cgggaaatgc ggttgggatt atcaagctga tgcaaaccta taatggcaag
     3181 aaagtattag gtatcggtac gttacaacat attcctcgtg caacagcggt tctcaaaggt
     3241 tatgcacagc acattggtta tccgattgag atggattccg ttggtggtgg caagccggca
     3301 acaccgggaa aagccaaaat cgaggcactt tatacttatg taaatgtggc gagatcaatg
     3361 gggttgtttg agttggggga ttttaagtag ttactttatt gacagctgct attgataaaa
     3421 atcccgcgtt aagcgggatt tttttatgtt ctacgaacgt ttcataatct cgaaaaactc
     3481 ttcgttagtt tttgccatca ttaatttgtc gattagccat tcgatagcat ctacttcgtc
     3541 cattgggttg aggactttgc gtaacatcca agttttttgg agttcgtctg ctgccattaa
     3601 gaggtcatct ttacgagtac ctgagcggtt gaagtcaata gccgggaaga tacggcgttc
     3661 agcaatacgg cgtgagaggt gtaattccat attacccgta cctttgaact cctcgaaaat
     3721 cacttcgtcc atttttgatc cggtatccac aagtgcggtt gcgataatgg ttaagctgcc
     3781 accttcttcc acattacggg ctgcaccgaa gaaacgtttt ggacgatgta aggcgttagc
     3841 gtccacacca ccggaaagga ttttgccgga aaccggggta atggtgttgt aggcacgggc
     3901 taaacgagtg atggagtcta ataaaatcac cacatctttt ttatgctcta ccgagcgttt
     3961 tgctttctcg attaccatct ccgcaacttg aacgtggcgg gttgccggtt catcaaaggt
     4021 tgaggcaatt acttcaccac gtacggtgcg ttgcatctct gttacttctt ccggacgctc
     4081 atcaattaat aatacgataa gctcacattc aggatgatta tgggtgatgc tttgtgcaat
     4141 attttgcagt aacacggttt taccagcttt tggcggggca acaattaacg ctcgctgacc
     4201 tttaccgatt ggggcggcta aatctaaaat acgagcggtt aaatcttctt ttgatccatt
     4261 gccacgctcc atttttaagc gagaattggc gtgcagaggg gttaagtttt caaagagaat
     4321 tttactgcga gaggcttccg gtttgtcatc attaactgaa tcaactttca gtagggcaaa
     4381 atagcgttct ccctcttttg gtgggcgaat tttaccttct attttatcgc cagtttgtaa
     4441 gttaaaacgg cggatttggc ttggagaaac ataaatatca tcagggccgg ctaaatatga
     4501 gctatctgat gagcggagga aaccgaagcc gtccggtaga atttcaagca cgccttgccc
     4561 gaaaatgtct tcaccgcttt ttgcgtgttg tttaagaata gcaaatacga tgtcttgttt
     4621 acgtaaacga gccagatttt ctaagcccat ttgattttca cccatttcca caagctctga
     4681 aacaggggtg tttttaagtt gagtaagatg cataatttga atgtaaaatt gtgattaatt
     4741 aagattggat ttgttgatat tgattagata cggccaaccg taaagatgtg gcgaagaata
     4801 acgcaatagg agacaaattg caaatttttt ataaaaaata accgcttgtt tgcaataaaa
     4861 atgccgacat cagccggcat ttttatatta atttaatatt acgcttcaat cccttcaaac
     4921 agtagcgtac ttaaataacg ctctgaggct gaaggcagaa tcactacaat taatttatcg
     4981 gcaaattcag gtagtttagc gatgcgatct gcggcagcaa cggcagcacc tgatgaaata
     5041 ccgcctaaaa tgccttcttc tgccattaaa cggcgtgcgg ttgtaatcgc ttcttcgctt
     5101 gaaacttgtt caacacggtc aagcagtgat aaatctaagt ttttcggaat aaaacctgca
     5161 ccaatgcctt gaattttgtg cgggcccggt ttgacttctt caccgtttaa agtttgcgta
     5221 atgaccggcg attcactcgg ttctaccgcc actgaaataa tttgcttgcc tttatcttgc
     5281 ttaatagcac gggaaacacc ggtaatagtg ccacctgttc ctacgcctgc cactaataca
     5341 tcaattttac cttcagttgc atcccaaatt tcaggaccgg tagtttgttg gtgaattgcc
     5401 gggtttgccg ggttttcaaa ctgttttaag gtaacatagc gctctgggtc ggaagacgcg
     5461 atttcttcag ctttcgcaat cgctcctttc attccttttg ccccttcggt taagactaaa
     5521 tttactccta agccacgcaa taagcgttta cgctcggtac tcattgtttc cggcattgtg
     5581 agcgttaatt tataaccacg agcggctgct acataagcca aggcaattcc agtgttaccg
     5641 ctggttgcat ctacaatttc tttgtctttg gttagaatac cgtctttctc tgcttgccac
     5701 accatattcg caccaatacg gcatttcacg ctaaaacttg ggttacgccc ttccactttt
     5761 accacaatat tgccgttgcc aaaattcttt aaacgcacca gcggggtatt gccgattgag
     5821 tatgagttgt ctgcatagat agtcatagtg atattcctta ataagtattg agattgggat
     5881 ttatcatact tatttttaat cgcttttcta gtagctggaa tttatttgat ataactaaaa
     5941 agaatatagg gtcgtatgaa gaggatcggt ctgattttct ttttgcaaaa actcgataaa
     6001 atcagaccgc ttgtgagggt tagacctggg ctttattgat caaaaattgt gttagtaagg
     6061 ataccggtct gccggtcgcc cctttggctg ccccagattt ccaagccgtg ccggcaatat
     6121 ctagatgcgc ccaagtatat ttctttgtaa agttagagag gaattgaccg gcagtacagg
     6181 ctccgcctaa acgtccgccg atattagcaa gatcagcaaa gttagatttt aactgttctt
     6241 gatattcttc ccctaaaggt aaacgccacg ctttgtcatc ggcttgctct gcggcagcta
     6301 agagttcgtt tgctaaaccg ttatgaggtg acatcagccc gctgttatga ttacctaagg
     6361 caatcatgca agcaccagtt agggtagcaa tatcaatcac taattccggt tcaaaacgtt
     6421 ctacatagct gagagcatca catagcacta aacgtccttc tgcatcggtg ttgagtacct
     6481 caacggttaa accagacatt gtagtgagaa tatcccccgg tcgataggct ttgccatcaa
     6541 ccgcattttc acagccggcg agtaagccga taacattgag tggtaatttc atctcggcaa
     6601 ttgctttgat tgtaccgtaa acagtagcag ctccgcacat atcgtatttc atttcgtcca
     6661 tcgcctccgc aggtttaatg gataaaccgc cagagtcaaa ggtcattcct ttgccgacta
     6721 agataatcgg cttcgcatca gcattcgggt tgcctttata ttcaatcact gaaagaaagg
     6781 cctcattttc agaggctctg gaaaccgcta agtaagcatt cattcccaat tctgccatct
     6841 gtttttcatc aataatggta gttgaaatgg caggatagtc gtaggctaaa cccttagcca
     6901 attcggctaa atagtgagga ttacacacat taggcggaca atttgctaca tttttagcgt
     6961 ggctgattcc aagtgctacg gcttttccgt gttctaaagc tcgttcggca tcaggaagat
     7021 ctttacggtg tgcgacatta aaaatcacac ggcgtaattc acggcgaact tcaggtttga
     7081 tgcttttgaa atcgttatag gcatatagtt gttcttggat tgcctctacc gcaaatcgca
     7141 cattccaata aggtgttcta cctttaacgt gcagttcggt taaaaagctg acagcttcca
     7201 ttgagccggt ttcattaata gtttgtacac ttttttgaat aatttgtttg tattggcgtt
     7261 cagttaattc acgctctttt ccacagccga ctaataatac tcgatcagcg agtacattcg
     7321 gcacattatg caagagtaag gtttgccctg ctttgccttc taaatctcct cttctcagta
     7381 atgtgctgat atagccgtta cttaatttat caagctgttc tgcggcagaa cataatcggc
     7441 ggggttcata gacaccaaca accaaacagg cggttctttg tttctcaaca ctgccatttt
     7501 tgacactaaa ttccattttt cctccttaat ttttattgct acagatttta taatgccaac
     7561 ata
//
LOCUS       DANLUT010000119         7551 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLUT010000119 DANLUT010000000
VERSION     DANLUT010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7551
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(96..1679)
                     /locus_tag="PXB38_001903"
     CDS             complement(96..1679)
                     /locus_tag="PXB38_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5354190.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            1902..3059
                     /gene="hemW"
                     /locus_tag="PXB38_001904"
     CDS             1902..3059
                     /gene="hemW"
                     /locus_tag="PXB38_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL5354191.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLSEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALVDLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKTKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREIVRPTIDWALNQNYISESSTHWQITQHGKLFLNELLEGFLD"
     gene            3201..3849
                     /locus_tag="PXB38_001905"
                     /pseudo
     CDS             3201..3849
                     /locus_tag="PXB38_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824574.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
     gene            3936..4403
                     /gene="bcp"
                     /locus_tag="PXB38_001906"
     CDS             3936..4403
                     /gene="bcp"
                     /locus_tag="PXB38_001906"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL5354192.1"
                     /translation="MNILQAGDKAPQFTLQNQADESVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPEHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGVVEQVFDKFKTGEHHQMIVDYLRGR"
     gene            4403..4951
                     /gene="gmhB"
                     /locus_tag="PXB38_001907"
     CDS             4403..4951
                     /gene="gmhB"
                     /locus_tag="PXB38_001907"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL5354193.1"
                     /translation="MGKKTIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     EDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTGKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            4956..5795
                     /gene="queF"
                     /locus_tag="PXB38_001908"
     CDS             4956..5795
                     /gene="queF"
                     /locus_tag="PXB38_001908"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL5354194.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDGLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVEKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STQHLENIAENEPVEEILVSHLLKSNCLITSQPDWGSVQIRYKGKKLNCEKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAQPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            5987..7120
                     /locus_tag="PXB38_001909"
     CDS             5987..7120
                     /locus_tag="PXB38_001909"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL5354195.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVGGGGARNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(7117..>7551)
                     /locus_tag="PXB38_001910"
     CDS             complement(7117..>7551)
                     /locus_tag="PXB38_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5354196.1"
                     /translation="LFIPLGLGSAFYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQ
                     SDFSRKLNLTVHKLIYIAPILIILQIMPWFYALQWLSTITAFLYLVIFATITVYANTA
                     LSNMLVKLDNGKNQGLMFGSSKLILAITTLGVMNVLPYIFLI"
BASE COUNT         2306 a         1442 c         1632 g         2171 t
ORIGIN      
        1 atataagacg aatattacat cattttgatt tttatttatg caagcggtaa attttttgta
       61 aaatattacc gcttgcattt agctagccgt tacgactatt tagcacgacc aacaccgata
      121 aatgacatac ctgttgttgg taatggttgg aaacctgtta atgccttatc attccacgca
      181 gttggcaatt tacggtgaat aattgggtaa agaggcactt gttcagcgat aatattgatt
      241 gctttcgccc aggcttcttt agaagcagca ggatttttgg ccgcttcatc aagcagtttt
      301 tgtacttctg catattcagc tgtttcagac cagcggaaac gacgtttcgg ccatacatca
      361 ccacgatacc accagcttaa taataggtct aagtcattac cgaaaactga tgggtcgcca
      421 ggtgcaatca caacttcgta tgcaccttta tcaacgtgtg tgccatataa tgcacctgat
      481 tgtaagtgtt tgagtgaaac tttcacgcct tttaagctgt tccacgattc aagaattaat
      541 ggcgcacatt ctttcaccca agagtgatcg gttgccaaca attcaaattt taactctgtc
      601 acacccgctt ctgctaataa cgcttcggct ttcgctttat cgaaatcata ttgcgaattt
      661 gctttcacat aatccgggtg agtatcttgc acgtaagatg tagcagcttt tgcattgcct
      721 aagaacacca catcaattaa tttttgggta tctaagccat aatgtaacgc ttggcgaact
      781 ttcgggttgt taaacggtgc tttttcacag ttaaacatta agaacagtaa gccgaatgat
      841 tgtactgact caacggtacc tttacgtttt aagcgttctg catctaagta aggcacagac
      901 tcaattgctt gaacacggcc agattcttga gcggttacac gagcggcatc atcagaaagt
      961 aagaaccaag tcattttctc gacttgtgcc gggtagccac cgttataatc tgcaaatgct
     1021 tcgaaaacaa tacgatcatc tttagttgcg gatacaaatt tatatgggcc agtccccact
     1081 ggattagcat caaatgcagc ttgaccggct tctaccactg cttttggtac gattttaaca
     1141 atggttaggc gctctttgaa taacgcaaat ggatatttca atttgaattc aaccactttg
     1201 tcatcaactt ttttcacagt gtcaataaat ggaatgaatt gtgcgaaaag tgatgcttta
     1261 gctgggtcta atacacgttc aaatgagtaa actacgtctt cagtggtaac cggattacca
     1321 ttgtggaatt tagccccgtc acgtaaagta attcgatagg ttacatcatc aattttttca
     1381 ggctctgctg ctgccaatgc taaatatggt ttgcgagtgg ctggatgtaa gtccacgagg
     1441 ccttcaaaaa tatggaggtt tgccgccatt gaggatgcac cgcttgaggt aagcgggtca
     1501 aatccggttg atatgggata agctataccg gcctcaatcg ttgagccggc ggcaggggct
     1561 gcaaatgctt taggtgtaaa tgtacctaaa gtgccactaa atgccatacc ggcaccgaca
     1621 cctgcaatta gtttcataaa accacggcgg gattcgttgt gttcaaactg ttttttcatc
     1681 ttaaagctcc tttaagtttt tatgataggg gcggtattat ttgctgaagt gaatttatca
     1741 aaaaatgcac tttttttaaa ttgaatttat catatcatta atgtcaaagt ggtaaagcaa
     1801 gaattattga atttgtgatc tagctcacga aaatctttgc ttttcacttc acgtgctttt
     1861 cgttattatt cgccaattta atcataaatg aaaaattgac agtgaacctg attttaccgc
     1921 ctttaagcct ttatatccat atcccttggt gcgtgcaaaa atgcccttat tgcgatttta
     1981 actcgcacgc tcaaaaagga ttaattcccg agcaagaata tatcgaacat ttacttgcag
     2041 atttatccca agatttgacc gcttaccgag tggcaatagg tgatcgtaaa ttatattcta
     2101 tttttattgg cggcggcacc ccgagcttat tttcagcgga agggatagct tatttattaa
     2161 gtgaagtaga aaaacggatt gcattcgagc caaatatcga aattacactg gaagcgaacc
     2221 cgggaaccgc agaggcagag cgatttttag gttacgcaca aggtggcgta acccgcattt
     2281 caatgggaat ccaaagtttt gagccggaaa aattattgaa attaggacgg attcacgatg
     2341 caaatgaagc aaaacaagcg attaaatttg cccaaaattc tgcaaaatcg ggcttgcaaa
     2401 gtttcaacat tgatttaatg cacggcttac caaaccaatc ggttaaacaa gccttggtgg
     2461 atttagaaac agggatttca ctcaatccac cgcatttatc gtggtatcag ctcacgattg
     2521 agccgaatac gatgttctat tatcgtaagc caaccttgcc tgatgatgac gagttatggg
     2581 atattttcga gcaagggcat caacttttaa cgaatgccgg ctatgagcag tatgaaacct
     2641 cggcttatgc caaaaaaggc taccaatgca gacacaattt aaattattgg cgatttgggg
     2701 attatttggc gattggttgt ggtgctcacg gcaaaatttc gtatccgaca ggggaaattt
     2761 atcgttttag caaaaccaaa cacccgaaag gttatatgcg aggggagtac cgctacagcc
     2821 aagatctgat tgagttagac gaccgcccgt ttgagttttt tatgaaccgc tttagattgc
     2881 ttgaagccac gccaaaacaa gaatttgaat ggtttaccgg tttagacagg gaaattgttc
     2941 gcccgacaat cgattgggcg ttaaaccaaa actatatttc cgaaagctca acccattggc
     3001 aaattaccca acacggtaaa ttgtttttaa atgaattact ggaaggcttt ctagactgat
     3061 ttgcaaaaaa acgaccaaaa cagaccgctt gtaatgctaa attacaggcg ttttttgtga
     3121 tgtgcgtcga aaaattcgta ttttttacta gacaaaaaaa cagtattcag tagcatagct
     3181 ctcacaaata aggagagctt atgaccgata aacaaatccg taatagtacc gccgaatttt
     3241 tgatttttac ccaacaaaat ggagcagaaa atattactgt tcgttatgaa gataacgaaa
     3301 tttggctcac gcaaaaatta attgctcagc tttttgatgt ttctattcca actatcaatg
     3361 agcatttaaa gcatattttt gaaagtggag agctagaaga aatgtcagtt attcggaatt
     3421 tcctaataac tgccgcagat ggtaaaaatt atcgtaccaa acactacaac cttgatgccg
     3481 ttatttcgat aggctatagg gtaaactcgg tgcgggcgac acaatttcgc caatgggcaa
     3541 ctaaagtatt acgggatttc gcccaaaaag gctatgtgat tgaccgccaa agaatggaaa
     3601 atggtacatt tttaaatgaa gattattttg agcagttgct ggcagaaatt cgtgaaattt
     3661 ggttatctga acggcgttct tgagggcaaa ggcaaaatgc gttttgatga agcgaaattg
     3721 cacgcagaaa gcgaatttga gaaataccgc attgttcaag acagattatt tgaaagcgat
     3781 tttgacaagg tattgaaaga agtgttgcgg tcggaaaatc aataccgtcc atcattttca
     3841 acaacataaa acaaccgcat tttgcaaatt ttttgccaag tttgaccgct tgccgtgtat
     3901 aatgcaagcg gttatttttt atggaaaaat tacaaatgaa tatcttacaa gcaggcgata
     3961 aagcccctca attcactctt caaaatcagg ctgatgagtc ggtttcactc tctcaatttg
     4021 ccggtaaaaa agtgttggtt tatttctacc cgaaagccct tacaccgggt tgcactacgc
     4081 aagcttgtgg tttgcgtgac agcaaatcag aacttgatga gctcaatgtg gttgttctcg
     4141 gaattagcac cgatttaccg aaaaaattag ctcaatttgt agagaaaaaa gcccttaatt
     4201 ttaccttatt atctgacccg gaacaccaag ttgcggaagc ctttggtgta tggggcgaaa
     4261 agaaatttat gggaaaaacc tatgacggca ttcaccgcat cagcttttta attgatgaac
     4321 agggcgtggt tgagcaagtg tttgataaat ttaaaaccgg cgaacatcac caaatgatcg
     4381 tggattatct acggggtcgc taatgggaaa aaaaaccatt tttttagacc gtgacggcac
     4441 aattaatatc gatcacggct atgtgcatca aattgatgat tttcaattta ttgacggtgt
     4501 cggcaaggcg ttaaaacagc tacaagacaa aggttattta ttggtgctgg taaccaatca
     4561 atctggcatt gcccgaggct attttagcga agcacaattt atgcaactaa ccgaatggat
     4621 ggactggtcg ctcgatgaag attatggcgt ggtactagac ggtatttact actgcccaca
     4681 tcaccccgaa ggcaaaggcg aataccgtga agattgtgat tgccgtaagc ctaaagcagg
     4741 tatgtttact caagcgattc aagatttaaa catcgaccca agccaatctt atatggtggg
     4801 cgataaatta gaagatatcc ttgccgcaga agctgccggc gtgaaaacca aagtgctggt
     4861 tcgcaccggc aaagccgtga cggaagaagg tcaggctaaa gccgatttgg tgttagatag
     4921 tttagttgat ttagtaaaat atattaaata aagcaatgaa ttataacgat aaatctcttt
     4981 cagccctgaa attagggcaa aaaaccgagt acaaaagcga atatgacgcc tcgcttttgc
     5041 aacctgttcc tcgtaaatta aaccgtgatg gtttaggcat tacacaagag cagcctttta
     5101 accgaggggc tgatgtgtgg acttgctatg agctatcttg gttgaaccaa aatgggctac
     5161 cgcaagtagc gattgcagat gtcgccattg attttaagag cgaaaactta attgaatcga
     5221 aaagtttcaa gctctatttg aacagtttta accaaaccaa atttagctca atagaagaag
     5281 ttgagaaaac gattcaagcg gatctggctc gctgtgcaag cggtcaggtt tcggtaaaaa
     5341 tttaccaatt atcgcactac acgcaacagc cgatagttga ttttgcaggc gattgcattg
     5401 atgagcaaga tattcaaatc gacagttatg cgttttcgac tcaacattta gaaaacattg
     5461 cagaaaatga gccggtggaa gaaatcttag tcagccattt gctcaaatct aactgcttaa
     5521 ttacttcaca gcctgactgg ggaagtgtgc aaattcgcta caaaggcaaa aagctaaact
     5581 gtgaaaaact gttacgttat ttagtgtcgt tccgtgagca taatgagttc cacgaacaat
     5641 gtgtggaacg cattttctgc gatttaatgc aattcgctca gccggaaaaa ttaacggttt
     5701 acgcacgcta caccagacga ggcgggctag acatcaatcc gtttagatcg aattttgagg
     5761 aagtgccgga aaatctaaga atggcacgcc aatgattttg ttgttttttg ttcccgtctg
     5821 aaccgcctga gcgtgtttga attggtaggt aaatttactc tgagcggagc gaatgtaaat
     5881 ttgccgttaa gccaattcaa actaagcgag gatagcggtg aagctcgggt tgcctttctt
     5941 ttggttactt ttctttggca aagcaaagaa aagtaacaaa tagcagatgt tgatttttat
     6001 gatgaatgaa tatagcccaa attactatat aggcgtaatg tccggcacga gccttgatgg
     6061 ggtggatatt gctttgctgg attttgcaaa aaatccaccg aaaatgaccg cttgtgattt
     6121 ttttccaatg ccggaggaat tacgggcgga tatttctgcg ttacttaaaa ccggcgaaac
     6181 caatctccaa aaactggggg aaattgatca ccgtttaggc ttgctttatg cagaaacgat
     6241 caatgcgttt ttagcgaaaa atcagctaaa agcagaggat attcaagcca taggttgtca
     6301 cgggcagacg gtgtggcatt caccggattc tgagtatccc ttcaccaccc aaattggcga
     6361 tatgaatttg gtggcagagc aaaccggtat taccactatc gctgattttc ggcgtaaaga
     6421 tatggcagta ggtgggcaag gggctccgct tgtgccggca tttcatcaag ctatttttag
     6481 cgatccaaat cgtctaacag tggtgctgaa tattggcggc atcagcaata tttcggtatt
     6541 aaatcccaat tcccctacag ttggttatga tgtaggagcc ggaaatactt tgatggatag
     6601 ttggatcgaa caacatcaag gcaaaagata cgataaaaac ggcgaatggg cgagaacggg
     6661 caagctcaat actgaactgt tagcgacgtt attagacgag tcgttttttg ctaaagcccc
     6721 gcctaaaagc actgggcggg agctgtttaa tttaacgtgg cttgcaaaaa aattggaaaa
     6781 tttgaccgct tgtcagccac aagatgtgca acgcacgctg gcagaattta ctgctcaaag
     6841 tattgccaat gagttattac gctttgaaag ctctctgcct cgcttgcttt tagttggtgg
     6901 tggtggggca agaaatccgt tattaatgga acggatttct gctttacttc ccgagtggga
     6961 ggttacaacc actacagaat ttggtttaga tattgattat gtagaggctg ccgcttttgc
     7021 ttggttagct taccagcgaa tccataattt acccagtaat atgcctagcg tgacaggagc
     7081 aaaaaaagcc gtgagtttgg gcgtgattta ccctgcttag attaagaaaa tgtaaggtaa
     7141 tacattcatt actccgagag tggtaatagc taaaattaat ttagagcttc caaacattaa
     7201 gccttggttt ttaccattgt ctaatttcac tagcatatta gatagtgccg tattcgcata
     7261 cacggtaata gtggcaaaaa tcactaaata gagaaatgca gtgatggttg aaagccattg
     7321 gagtgcataa aaccaaggca ttatttgaag tataatcagt attggtgcaa tataaataag
     7381 tttatgtact gtcagattta attttcgtga aaaatcagat tgcaataaca ctgcaattaa
     7441 attattcaca aagaatgaga cagagactaa ttctggttta tccagaagat tggtgaatat
     7501 ataggggaat ataatataaa atgcacttcc tagaccaagc ggaataaaaa g
//
LOCUS       DANLUT010000120         7526 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLUT010000120 DANLUT010000000
VERSION     DANLUT010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7526
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            67..498
                     /locus_tag="PXB38_001911"
     CDS             67..498
                     /locus_tag="PXB38_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL5354197.1"
                     /translation="MAEQIVPSNEAVLKAGHDTLVISTTDLQGVITYANDLFCKLTGF
                     TREELIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQP
                     MFDETGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            569..2125
                     /locus_tag="PXB38_001912"
     CDS             569..2125
                     /locus_tag="PXB38_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL5354198.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEMLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGEPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2183..2440)
                     /gene="rpsQ"
                     /locus_tag="PXB38_001913"
     CDS             complement(2183..2440)
                     /gene="rpsQ"
                     /locus_tag="PXB38_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL5354199.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2440..2631)
                     /gene="rpmC"
                     /locus_tag="PXB38_001914"
     CDS             complement(2440..2631)
                     /gene="rpmC"
                     /locus_tag="PXB38_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL5354200.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2631..3041)
                     /gene="rplP"
                     /locus_tag="PXB38_001915"
     CDS             complement(2631..3041)
                     /gene="rplP"
                     /locus_tag="PXB38_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL5354201.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3055..3762)
                     /gene="rpsC"
                     /locus_tag="PXB38_001916"
     CDS             complement(3055..3762)
                     /gene="rpsC"
                     /locus_tag="PXB38_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL5354202.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3782..4114)
                     /gene="rplV"
                     /locus_tag="PXB38_001917"
     CDS             complement(3782..4114)
                     /gene="rplV"
                     /locus_tag="PXB38_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL5354203.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4125..4400)
                     /gene="rpsS"
                     /locus_tag="PXB38_001918"
     CDS             complement(4125..4400)
                     /gene="rpsS"
                     /locus_tag="PXB38_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL5354204.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4431..5252)
                     /gene="rplB"
                     /locus_tag="PXB38_001919"
     CDS             complement(4431..5252)
                     /gene="rplB"
                     /locus_tag="PXB38_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL5354205.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5271..5576)
                     /gene="rplW"
                     /locus_tag="PXB38_001920"
     CDS             complement(5271..5576)
                     /gene="rplW"
                     /locus_tag="PXB38_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL5354206.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5573..6175)
                     /gene="rplD"
                     /locus_tag="PXB38_001921"
     CDS             complement(5573..6175)
                     /gene="rplD"
                     /locus_tag="PXB38_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL5354207.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6191..6820)
                     /gene="rplC"
                     /locus_tag="PXB38_001922"
     CDS             complement(6191..6820)
                     /gene="rplC"
                     /locus_tag="PXB38_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL5354208.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6846..7157)
                     /gene="rpsJ"
                     /locus_tag="PXB38_001923"
     CDS             complement(6846..7157)
                     /gene="rpsJ"
                     /locus_tag="PXB38_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL5354209.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2201 a         1591 c         1381 g         2353 t
ORIGIN      
        1 atatgttgtc agtatttata ctgataaaca cataacaaaa ttcatttata ttaatggaga
       61 ttcaacatgg ctgaacaaat tgttccttca aatgaagctg ttttaaaagc aggccacgat
      121 actttagtta tttcaacaac tgatttacaa ggtgttatta cttacgctaa cgaccttttc
      181 tgcaaattaa ccggttttac ccgtgaagaa ttaattggac aaccgcataa tatcgtacgc
      241 cacccagctg taccaaaaga agtttataaa gatatgtggg atacaatcca agccggtaaa
      301 atctggacag gtatcgtacc aaactgcggt aaaggcggtg tagtttatgt ggttgatacc
      361 accgttcaac caatgtttga tgaaacaggc aaaattacag gctatatcag cgttcgccgt
      421 gtaattaatg atttaatgac caactttgaa gcagtagaat cagcaaaaga aatctttgat
      481 gacttctacg gtgaataatt aaaaaacaat gattgcgtgt aaaagatgat ctcttttaca
      541 cgcaattttt tattttcgag gagtttgtat gtctctcatt ccccatatcc acattgctta
      601 tggttcggag tctggtaacg cagaaaagct tgcccaacaa ttagctatcc aacccttttt
      661 acttccctac tcacccacac tttctacatt aaacgaaacc gatttaagcc aattatctgc
      721 cgagagttta ttgcttattg taaccagctc ctttggtgat ggcgaaccac ctgaaaacgc
      781 cgatgaattt gcagaaaaat tggaaaattt gaccgcttgt aatctgcaat atgcgatatt
      841 cgggctaggt gatattactt atgataaatt ctgtggctat agcaaacaac tagattcatt
      901 attacaacaa aaacaagcta aagctgtgat tgcaagggtt gatgccgatt taaactatca
      961 agaaattttt aaacaatggc tacccctagt ggagcaggca ttacattcaa caaacaaaga
     1021 aacgatccaa cattcccttt ctgttcaagc ttacggcgag gaaatggcat accaagcaga
     1081 aatgttggaa attaagcatt tggcaaactc aagccctgcg gtgtatcaca ttcgtttatc
     1141 attaaaagag agcggtattt tctatcaagc aggggattta atttatgtca aagtgcagca
     1201 accagacaga ctattaaatg aatatgcaga atggtttaac gatcaaaatg cagttgcatt
     1261 actacgccat aaagaactcc gactactaag taaaaatgta ctgcgtgata ttcaaaaaat
     1321 ttgcggcagt aatgaactca aagatttaac taaaatttcc aataaaaaag cattggaaca
     1381 atatgtctat gggcgggatt tattagacgt attacgcgat tttgacccaa acaaaagcgt
     1441 gacattagcc gatttagagc caattttatc taacttagcc gcacgagcct attcaattag
     1501 ctcttgcggt aaaactcacc ctgattatgt tgatttatgt atccgccacg tttcgtatca
     1561 tttaaacggt agagattatc aagggactgc aagtgggtat ttatccgaat tacaagcggg
     1621 cgattttgtc tcgatttttg caaatgccaa tccgaatttc cgtttacccg aaacattaac
     1681 cgctccggtg gtgatgattg gctcaggtac tggcattgct ccgcatatcg catttttaca
     1741 agcgttagag cagcaatatc agggggttga aagctattta ttcttcggcg agcgttatcg
     1801 tgataaagat tttctgtatc aaacggaact ggaaaattac ttagcaaaag gcaccttaac
     1861 tcagctgttt actgcttttt cacgtgatca ggcagagaag ttttatgtgc aagatgccct
     1921 atcgcaacaa gcagagttag tttggcattt aattcagcaa ggggcttatt tctatatttg
     1981 tggtagcaaa gcaatgagta aagcaataga tgcggaactc atcaaaattg cagatcaaat
     2041 tggaggcgag ccttatattg atgatttcaa taatattatt gcaaaattgg tcgcagaagg
     2101 ccgattaatg cgagatgtat attagcaaat gaaaaaaact aaaaacccag caaaagctgg
     2161 gtttttattt aatcatagtt cattaagcaa caactgcttt ctcaactaca cgaactaaag
     2221 tccaagattt agtttttgaa ataggacgac attccttaat ttcaacaaca tcacctaatt
     2281 tagcttcgtt gttttcatcg tgtacatgaa gtttagtagt acgacggata aacttaccgt
     2341 ataacggatg tttaactgta cgttcgatag caacaacaaa tgatttatcc attttgtcgc
     2401 taaccacttt accttgtact gtacgaattt tatcagtcat tattcacccg ccttttcggt
     2461 taatacagtt ttaacttgtg caatactacg acgcacttgt tttaactggt gggtttgttg
     2521 aagctgaccg gtggctgctt gcatacgcaa tttgaattgt tcacctaaaa ggttcactaa
     2581 ctcaccattc agctcttcaa cacttttatt acgtagttct tgagctttca ttacatcacc
     2641 gtcttagtta caaatgtggt tttgaacgga agtttagctg ccgctaatgc aaacgcattg
     2701 cgtgcaactt cttcagaaac accatccatt tcatagagaa ctttacccgg ttggattaag
     2761 gctacccagt actcaacgtt acctttacct ttacccatac ggacttctaa tggtttttca
     2821 gtaattggtt tgtctgggaa cacacggatc cagattttac cttgacgttt aaccgcacgg
     2881 ctcatcgcac gacgagcagc ttcaatttga cgagctgtta aacgaccacg gccaatagct
     2941 tttaaaccaa atgaaccgaa gctcacttct gtgccacccg cgataccacg gttacggcct
     3001 ttgtgtactt tacggaattt tgtgcgtttt ggttgtaaca ttcagtgatt ctccttattt
     3061 acgacctttg ccacgtggcg cctttttagg ctgtgccgct ggttcttttt cagattcaat
     3121 cactgcagcc attccaccaa gaatttcacc tttgaagatc cacactttta cgccgattac
     3181 gccgtaagta gtgtgagctt cagcagtact ataatcgatg tctgcacgaa gcgtatgtag
     3241 aggtacacga ccttcacgat accattctga gcgagcaatt tctgcaccac ctaaacgacc
     3301 gctaacttca actttgatac ctttagcacc taatttcatc gcgttttgaa ctgctttttt
     3361 cattgcacga cggaacatca cacgacgttc aagttgagaa gcgatgctat ctgcgactaa
     3421 tttcgcatct agctctggtt ttttcacttc agcgatgttg atttgagctg gaacgccagc
     3481 gattttcgca actgcgttgc gtaatttttc aacatcttca ccttttttac cgataacgat
     3541 acccgggcga gctgtgtgaa tagttacacg aatgcttttt gcaggacgct caatagtgat
     3601 gcgtgataca gaagcgttcg ctaactcttt gtttaaaaat ttacgtactt tgaagtcgcc
     3661 gtctaagtta tcagcgaaat cttgtgtatt cgcgaaccaa gtagagttcc aaggtttaac
     3721 aatacctagg cgaataccat taggatgtac tttctgaccc atttgttatt ctcctactta
     3781 attaacgatc tgacacaacc acagtgatgt ggcttgtacg ttttaaaata cgatctgcac
     3841 gaccttttgc acgtggcatt acacgtttca tgcttggacc ttcatcaacg aagattttag
     3901 caactttaag atcatcgaca tctgcaccgt cattatgctc tgcgtttgca atagctgact
     3961 ctaatacttt cttaacaagc gtcgctgctt ttttgttagt gaaagttaag atttctaatg
     4021 ctacagaaac ttttttaccg cgaattaaat cagcaactaa gcgagctttt tgggcagaag
     4081 tacgagcgta acgatgttta gcaatagttt ccatctttta cctcttattt cttagctttc
     4141 ttatctgcgg cgtgaccgcg gtatgtacga gtcggtgcaa attcacctaa tttatgaccg
     4201 atcatttcgt cggaaacata aacaggaacg tgctgacgac cattatggac tgcgatggtc
     4261 aaaccaatca ttgatggaat gatcattgaa cgacgggacc aagttttaat tggtttttta
     4321 tccccgcttt ccaccgcctt ctctaccttc ttcaacaagt gtaggtcaag gaaaggacct
     4381 ttcttgaggg aacgtggcat tggtgtttac cttttagtta atgaattaaa ttatttgcca
     4441 cgacgacgta cgatgaattt atcagtacgt ttgttgtgac gagttttctt acctttggtt
     4501 tgaacgcccc aaggtgtaac agggtgttta ccgaagttac gaccttcacc accaccgtgt
     4561 gggtgatcta ccgggttcat tgcagtacca cgaacagttg gacgaatacc tctccaacgg
     4621 tttgcacctg ctttaccaag aacgcgaagc atatgctctg agttacctac ttcaccaatg
     4681 gttgcagtac actcagctaa tactttacgc atttcgcctg aacgaagacg taaagttaca
     4741 tagttacctt cacgggcaat gatttgaacg taagcaccag cagaacgtgc aatttgacca
     4801 cctttaccag gttttaattc aacgttgtgt acagttgtac ctactgggat gttacgcatt
     4861 ggtaatgcgt tacctacttt aatcggagct gaagcacccg cttgaatttg atcaccagca
     4921 gttaaacctt ttggtgctaa aatatagcga cgttcaccat ctttataaag tactaatgcg
     4981 atattcgcag aacgatttgg atcgtattct aaacgctcaa caacacccgg aatgtctaat
     5041 ttattacgtt taaaatcaat taaacggtag tgttgtttgt gaccgccacc aatgtgacga
     5101 gttgtgatac gacctaagtt gttacgacca ccagttttag atttagtatc taaaagtgct
     5161 gcaaaaggtt tacctttgtg aagctcagcg tttacaactt taacaacgtg acgacgacca
     5221 gcggaggtcg gcttacattt aacgatagcc atttatttta tctcctctga ttactctgcc
     5281 gcaccttcaa cgaagtcaag cgattgacct tcttgaagag ttacataagc ttttttccag
     5341 tcactacgac gaccaacttt agcaccacgg cgtttagttt tacctttaac tactacggta
     5401 cgaacagaat caacttttac ttcaaacagt tcttcaactg catttgcaat ctcaactttg
     5461 tttgcatcta atgcaacttt gaatacgatt gtattgcctt tttctgcgtt gtttgtcgct
     5521 ttttcagaga tatgtggtgc tttaagcacg tttagcaaac gttcttgttg aatcatgcta
     5581 acatctcctc aatttgtttt actgcatcta cggttacaac cactttatcg aaagcaatta
     5641 agctaactgg gtcaatacct tgcacatcac gcacatcaac tttatataag ttgcgtgctg
     5701 ctaaaaataa attctcatct acgtttgcag taatgataag agcgtcattt aacgccatat
     5761 cttttaattt ttgtgctaat actttagttt ttggtgcatc gatttcgaat ttctcaacaa
     5821 ccactaaacg gtcttgacga actaattcag aaagaatgct tttgattgca ccacggtaca
     5881 tttttttgtt cactttttgg ctgtgatctt gtggtttcgc agcaaaagtt acaccacccg
     5941 aacgccaaat tggtgattta atatcaccag aacgcgcacg gcctgtacct ttttgacgcc
     6001 aaggtttttt acctgaacca gacacttcag cacgagtttt ttgagcacga gatccttgac
     6061 gagcacctgc tgcataagca acaactactt ggtggattaa tgcttcattg aactcacgtc
     6121 cgaaggtagt ttcagaaaca gttagtgcgt ttgcacctac aacttgtaat tccatctcta
     6181 tctcctagac ttatgcttta actgccggtt ttacgataac atcaccatta gttgcaccag
     6241 gaacggcacc tttaactaat aataatttac gctcaacatc tacacgaaca acttcaagtg
     6301 attgaacggt tacacgctct gcacctaagt gtcctgccat ttttttacct ttaaacacac
     6361 gacctggagt ttggttttga ccaatagaac caagtacacg atgtgataaa gagttaccgt
     6421 gagttgcatc ttgagtacgg aagttccaac gtttaacacc accttggaag cctttacctt
     6481 ttgatgtacc agtaacatcg acttttttaa catcagtaaa gatgtcaaca ttgatttctt
     6541 gacctaaagt gaattcttca ccttcagtag tacgaaattc ccataaaccg cgtccagctt
     6601 caacacctgc tttcacgaaa tgacctgctt ctggtttagt tacacggcta gcttttttag
     6661 agccagtagt aacttgaatt gcagagtagc catcgttttc aagggtttta acttgagtaa
     6721 cacggttggc ttcgatttcg ataacggtaa ctggaataga cacgccgtct tcagtgaaaa
     6781 cgcgggtcat accaacttta cgaccgatta aaccaatcat tgtaataacc tcttaaaatt
     6841 cccaattaac ctagactaat ctgaacgtca acgccagcag ctagatctaa acgcattaat
     6901 gcatcaacag ttttttctgt tggttcaaca atatcaacta aacgtttgtg agtacggatt
     6961 tcatattggt cacgtgcatc tttattcacg tgtggagaaa tcaatacagt gaaacgttct
     7021 ttacgagttg gtaaaggaat tggaccacga acttgtgcac cagtacgttt agctgtttct
     7081 acgatctccg cagtagattg atcaattaaa cgatgatcaa atgcttttaa gcggatacgg
     7141 attctttggt tctgcattag accagagctc caattaaaaa atttagctaa taaaaaaacc
     7201 aaactaccac ttaacaaatt agttaaggga gctcagttaa acctatatag ttccaaaatt
     7261 aggaacattg tatacactac aatatctgta gtgccatttg ataaatgatt acatcaaatg
     7321 tctttagata cctaaagctt tgctatcata ctcgtttcat ttcccttatg caagtaattt
     7381 ttgtttttta tattgacaat aatttgattc gataaaactt ctaaagatac acaatatttc
     7441 caatacttca tttgaagtgg ctcaaataaa ttgtatttat gcattttttt attcaaactt
     7501 ttcgagccac ttcacaaatc taaaaa
//
LOCUS       DANLUT010000121         7272 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLUT010000121 DANLUT010000000
VERSION     DANLUT010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7272
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            25..666
                     /locus_tag="PXB38_001924"
     CDS             25..666
                     /locus_tag="PXB38_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family DNA transformation protein"
                     /protein_id="HDL5354210.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPETCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     QGFDVTEDLLFKLNGALNHQYIYTFTDQQKRELMQEANQALYNSGLRKRFNAL"
     gene            827..2221
                     /gene="fumC"
                     /locus_tag="PXB38_001925"
     CDS             827..2221
                     /gene="fumC"
                     /locus_tag="PXB38_001925"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL5354211.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2348..2458
                     /locus_tag="PXB38_001926"
     CDS             2348..2458
                     /locus_tag="PXB38_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL5354212.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2563..3813
                     /gene="lysA"
                     /locus_tag="PXB38_001927"
     CDS             2563..3813
                     /gene="lysA"
                     /locus_tag="PXB38_001927"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL5354213.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHLHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3827..4456
                     /locus_tag="PXB38_001928"
     CDS             3827..4456
                     /locus_tag="PXB38_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5354214.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTVRDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4527..5972
                     /gene="tldD"
                     /locus_tag="PXB38_001929"
     CDS             4527..5972
                     /gene="tldD"
                     /locus_tag="PXB38_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL5354215.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNALIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            6036..6917
                     /gene="prmA"
                     /locus_tag="PXB38_001930"
     CDS             6036..6917
                     /gene="prmA"
                     /locus_tag="PXB38_001930"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL5354216.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCCITGRKI"
     gene            complement(7092..7167)
                     /locus_tag="PXB38_001931"
     tRNA            complement(7092..7167)
                     /locus_tag="PXB38_001931"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7132..7134),aa:Trp,seq:cca)
BASE COUNT         2166 a         1616 c         1621 g         1869 t
ORIGIN      
        1 atgaccttac atcggagtac atatatgcaa acaatcaatg aaattaaaga agaaatctac
       61 cctatatttg agcctatcat tggaacaatt cggctaaaaa cctacttttc ctactacgca
      121 gtttttaagg atggattgat gattgcattg tatcaaaatg gagcaactta tttacgtatt
      181 gcgaaaaaag atattgaata cattcgtcag tatcctgaaa cctgtatctt atgcgatgaa
      241 aaaattggta tacaaagtag aaaatttcat tatattccgc aagttctcat agatgataca
      301 ccaaaattta gctcgctact ctttggaatt atagaggaac tccgaacgga gaagtacaaa
      361 ataagccaaa agcgagctac acaaatccga aacctaccaa atatgaattt aaagttagaa
      421 agaatgttga aaaaaatagg gattcattcc attcatgatt ttactcaaga agggtatatg
      481 tcaactttta tcaaactgat tctccagggc tttgatgtta ccgaagactt actgtttaag
      541 ctaaacggag ctttaaatca ccaatatatt tacaccttca cagatcaaca aaaaagggaa
      601 ctaatgcaag aagcaaatca agcgctatat aattcaggcc taagaaaaag atttaacgcc
      661 ctgtagttaa ataatgtgat ccaaatcata aaatataaaa aaaccaataa ggaattgcaa
      721 ttcgcagttc ctttcttttt cttttatatg ctagtatcac cttatacctc taaattatta
      781 gtgcctactg attttcaatt aatccaacaa tttaggagag cgaatcatgg aattccgtat
      841 cgaaaaagac acaatgggcg aagtgcaagt tcctgccgat aaatactggg cggcgcaaac
      901 cgagcgttca cgcaataact tcaaaatcgg gccggaggca tcaatgccgg cggaaattat
      961 cgaggcgttt ggctatctga aaaaagcggc tgcctatgct aatcacgatt taggcgtact
     1021 agcggtcgaa aaacgggatt taattgcaaa agcctgtgat gaaattttgg cgaacaaact
     1081 cgatgatcaa ttcccgctgg tgatttggca aaccggctcg ggtacgcagt caaatatgaa
     1141 cgtgaatgaa gtcgtggcaa accgtgcaca cgtgttaaac ggcggtaagc tgggtgaaaa
     1201 atcgattatt cacccgaatg atgatgtgaa taaatcccaa tcttctaacg acacctaccc
     1261 aactgcaatg cacatcgctg cttacaaaaa agtggtggaa cacaccctgc cttgtgtgaa
     1321 acgtctgcaa aaaaccttag cggaaaaagc cgaagccttt aaagatgtgg tcaaaatagg
     1381 gcgtactcac ttaatggatg ctaccccgct cacgctcggt caagagttct ctgcctatgc
     1441 agcacagtta gcattcggca tcaaagcatt ggaaaacacc ctgccacacc tgcgtgagct
     1501 ggcactcggc ggcacggcag tcggcaccgg cttgaatacc ccgcaaggtt acgatgtgaa
     1561 agtggcggaa tacattgcga aattcaccgg tttaccgttc gttaccgccc aaaacaaatt
     1621 tgaggcatta gcgactcacg atgcgattgt cgaaacccac ggtgcattaa aacagcttgc
     1681 ggtgtcgctc tacaaaattg ccaacgatgt ccgtttatta gcctccggtc ctcgttcagg
     1741 cattggcgaa attctgattc cggaaaacga gccgggttca tcaattatgc cgggtaaagt
     1801 aaacccaacc caatgcgaag caatgacaat ggtatgtgcc caagtattag gcaacgatgt
     1861 aaccatctct tttgccggca cgcaagggca tttccaactg aatgtctata aaccggtgat
     1921 ggcgtacaac ttcctgcaat cggctcaact gctaggcgat gcgtgcgtgt cgtttgacga
     1981 acactgtgca gtcggcattg aaccgaacta ccctcgcatt aaacaacagc tcgaccaatc
     2041 gctgatgtta gtgaccgcat taaatactca cattggttat gaaaatgcag cgaaaatcgc
     2101 caaaactgcc cacaaaaacg gcacaacact gaaagaagag gcgattaact taggcttagt
     2161 cacggcagaa cagttcgatg aatgggttcg tccggaagat atggttggca gcttgaaata
     2221 agcccaaccc ttctcttgta atctgattta cacctcaatc taccggtaag attgaggtgt
     2281 aattttttat agcgagggta ctgattttgt tttagaatga agcatcattt tttaaacgga
     2341 aaaacctatg aaaaaactca ttttaatcgc attagttact actttaggct taagtgcttg
     2401 tggggtcaaa ggcccactct acttccctga gcaagcccct aaacatgaac aaaaataagc
     2461 attgcaagcg gtctgttttg gctaaaattt tgcaaatttt tgtgaaaaaa tgaccgcttg
     2521 ttgcctcttt tctttcaaaa tcccaaacac aacggacttt caatgaacca ttttgaatat
     2581 aaaaacaacc aactttttgc tgaagaagtc gctattgccg atattatcga gcaatacggc
     2641 acgccagctt atgtttactc cagatctacc cttgaacgcc acttgcacgc attcaataat
     2701 gcgtttggct cgcacccaca tttagtttgc tttgcagtca aatccaactc taacattgcc
     2761 ttgttaaatg taatggctcg tctcggttca ggctttgata ttgtctctca aggcgagttg
     2821 gagcgtgtct tagctgccgg cggcgaagcc tctaaagttg tcttttccgg tgtggcaaaa
     2881 tcgcacagcg aaatcaaacg agcattggaa gtcgggattc gttgctttaa cattgaatcg
     2941 gtttccgaac ttcaccgcat taaccaagtt gccggtgagc taggcaaaat cgcaccgatt
     3001 tcactgcggg taaacccgga tgtggacgcc cacactcacc catacatttc caccggttta
     3061 aaagaaaaca aattcggcgt gagcgttact caagcccgtg aagtgtatcg cttagccaaa
     3121 accttaccga atgtgaaaat taccggtatg gattgtcaca tcggttcgca attaaccgaa
     3181 ttgcaacctt ttttagatgc aacggatcgc ttaatcatct taatggagca actgcgtgaa
     3241 gacggcattg agctacacca cttagactta ggtggcggtt taggcgtgcc ttacaacggc
     3301 gaagagcctc cgcatccgac cgaatatgcc aaagccttgc tggaaaagct caaaggctat
     3361 gaaaacttag aaatcattat tgaaccgggg cgtgccatta ccgcaaatgc cggtatttta
     3421 gtgacgaagg tggaatactt gaaacaaaat gaagatcgta attttgcgat tgtcgatacc
     3481 ggtatgaacg atatgattcg cccggctctg tatgaagcct atatgcaaat tacggaagtg
     3541 gataaaacct taaaccgtga caaagctgtt tacgatgtgg tcggtccgat ttgcgaaacc
     3601 tcggatttct taggcaaaca aagagaattg gcaatttctg aaggggattt aatcgctatt
     3661 cgttctgccg gtgcttatgg ggcggcgatg tcttcaacct acaactctcg cccacaagcg
     3721 gcagaaatta tggttgatgg caaccaagcc catttaatta aagcccgagc cacttttgct
     3781 gatttatggc gtttagaaaa attattacct taatgaggaa gaaaagatga aattatatgg
     3841 attaaccggt gcttgttcat ttgtaccaca cgttgcccta gagtgggtga aattgcgtgc
     3901 caatcaagat tatgcgtttc aagctgttag ccgtgaattt attaaatcgg cggaatatct
     3961 ggctttaaac cctcgtggta acgtaccatt gttggttgat ggcgacttgg ccctcacgca
     4021 aaaccaagct atcgtccact atttagacga gctttatccg gaagctaaat tattcggcag
     4081 caaaaccgtt cgtgataaag ccaaagcggc tcgttggtta gcttttttca attcagatgt
     4141 gcataaatca ttcgtgccac tgttccgctt gccaagttat gcggaaggca atgaaacgct
     4201 caccaaaact attcgccaac aatcggctga gcaaatttta gaacaactgg cttttgcgaa
     4261 tgctcattta gaaaatcata ttttctttgg cgaagaaatt tcggttgccg atgcgtatct
     4321 ctacattatg ctcaactggt gtcgcctact agggttggat ttctctcatc tttcccaact
     4381 ttctgccttt atgcaacgag tggaggcaga ccaaggcgta gataatgtgc gtgagcaaga
     4441 aggcttaaaa ggttaattca ccattgttca tttaagacgg tagattttat gttaaaatct
     4501 accgtctttt atttttagga atcaccatgc taaatcaggt ttcaaacagc ttgcttgctc
     4561 caagtgggct tgaattatcg cacttaactc aagtgttaga tcacttctcc ggccgtcata
     4621 ttgattatgc cgatctctac ttccaactca gccaagacga aagctggagc ttggaagaca
     4681 gcatcatcaa agaaggcggt ttttatatcg accgagggtt cggtgtgcga gccatatcag
     4741 gcgaaaaaac cggctttgcc tacgccgatc aaatcacgtt aaaacagctt gagcaatgtg
     4801 ccgctgccgc acgttcaatc agcccaacaa gcggtcaatt atcggtaaaa aatttcaaaa
     4861 aaacgaccgc ttgttctcgc tacccggcaa tcaacccgct agagacaatc agccgtgaac
     4921 aaaaggtcga attgctccat ttggtggata aaaccgctcg aatggcagat ccgagagtga
     4981 ttcaagtgaa tgcgaatctc tcagcggtat atgaagaaat gttagtggca gcgactgacg
     5041 gcacactggc tgcggatatt cgcccgttag tgcgtttatc tgtgtcggta ctggtggaac
     5101 aaaatggcaa gcgtgaacga ggttcagcag gtgccggtgg tcgctttggt ttagattggt
     5161 tcttagcacc aagcgaaacc ggctttagcc gtgcggaatc gcttaccaaa gaagccgttc
     5221 gccaagccct cgtcaatctc acagccattc ctgcaccggc aggcacgatg ccgattgttc
     5281 tcggtgctgg ctggccgggc attttgctcc acgaagcagt cggacacggc ttggagggtg
     5341 attttaaccg taaggaatct tcgctcttca gtggtaaaat cgggcaaatg gtcacctctg
     5401 agctttgcac cattgttgat gacggtacgg tgccgaatat gcgaggctca atcacggtag
     5461 atgacgaagg cgtgccttcg caacgtaatg cgttaattga aaacggcatt ctaaaaggct
     5521 atatgcaaga caaactcaat gcccgcctga tgggagttgc cccaaccggc aacggcagac
     5581 gggaatctta cgctcatttg ccgatgccac gaatgaccaa cacctacctc accgaaggca
     5641 atcacgaatt tgaagagatg attgaatcgg tcgaatacgg tttatatgct cctcacttca
     5701 gtggtggaca agtggatatt acctccggca aatttgtgtt ctccaccgcc gaagcctact
     5761 taatcgaaaa aggcaaaatc accaaacctg ttaccggtgc aaccctgatc ggcagcggca
     5821 tagaagcaat gcaacaagtt tcaatggtcg gcaaaaaaat ggaactcgac cccggcatcg
     5881 gcacttgtgg caaagaaggg caatccgtac cagtcggcgt agggcagcct acagtgaagt
     5941 tggataaaat tacggtgggg ggaagagggt aatctctccc cgtttgcaaa atataaagaa
     6001 aatatcaccg cttgtagcga taaaaggaaa acaaaatggc ttgggtacaa attcgtttaa
     6061 acagtacaga taaacaggct gaggaaatca gcgatttttt aaccgagatt ggagcggtgt
     6121 cagtgacttt tatggatagt caagataccc caatttttga acctcttccg ggggaaaccc
     6181 gtctttgggg aaataccgat gtggttgggc ttttcgatgc ggaaactgat atgaatctta
     6241 tcgtagaagc actaaaaacc agcaaattgg tggacgaaaa ctttgctcac aaaatcgagc
     6301 aaatcgaaga caaagactgg gaacgggagt ggatggataa tttccaccca atgcagtttg
     6361 gcaaacggtt atggatctgc ccaagctggc gcgaagtacc agacccgaat gcagtgaatg
     6421 ttatgttaga ccctggttta gcatttggca ccggcacaca cccaacgacc tcgctttgct
     6481 tacaatggtt agatagctta gatttagaag gcaaaacggt tatcgacttc ggctgtggct
     6541 ccggtatttt agctatcgct gcacttaaac tcggtgcaaa acaagccatc gggattgata
     6601 tcgacccaca ggcgatttta gctagtcaaa acaatgctga ggcgaacggc gtagcagaaa
     6661 aactacaact attcttagcc aaagatcagc caagagagtt acaagccgat gtcgttgttg
     6721 cgaatattct agccggccca ctcaaagagt tagcaccgaa tatcatcacg ctggttaaac
     6781 caaacggcaa tttaggctta tccggcattc ttgctactca ggctgaaagt gtgtgtgagg
     6841 cttatagcga agcctttacg ctagaccctg ttgtagaaaa agaagaatgg tgttgtatta
     6901 caggccgcaa aatctaatat aagaagccct gttttaaaca gggcttactt tttgataaat
     6961 tctactactc tttacctgtc ttgggaatcg ttctccctaa attaattaac acaagcggta
     7021 gaaataacag gaaaatttac aaattacata aatgaaaaaa gccgactgaa atcagtcggc
     7081 tttctaaata atggcagggg cggagaggct cgaactccca acacccggtt ttggagaccg
     7141 gtgctctacc aattgaacta cgcccctatt gataggtatt cattttgcac ttataggggc
     7201 gaattactat tcgccccctg cattaaagat tattggcgga acggacggga ctcgaacccg
     7261 cgaccccctg cg
//
LOCUS       DANLUT010000122         7261 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLUT010000122 DANLUT010000000
VERSION     DANLUT010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7261
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            83..634
                     /locus_tag="PXB38_001932"
     CDS             83..634
                     /locus_tag="PXB38_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5354217.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFINMPTLPFALNVGNLFAGVFDEQGEI
                     ASEALKSAMQNFINAYAQFVEKY"
     gene            complement(704..1452)
                     /locus_tag="PXB38_001933"
                     /pseudo
     CDS             complement(704..1452)
                     /locus_tag="PXB38_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            1543..2607
                     /locus_tag="PXB38_001934"
     CDS             1543..2607
                     /locus_tag="PXB38_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL5354218.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLSIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKTQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            2792..3451
                     /locus_tag="PXB38_001935"
     CDS             2792..3451
                     /locus_tag="PXB38_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5354219.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWDVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            3587..4504
                     /locus_tag="PXB38_001936"
     CDS             3587..4504
                     /locus_tag="PXB38_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5354220.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTTLATQAAVNGEFGRQLGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGSILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            4718..5596
                     /locus_tag="PXB38_001937"
     CDS             4718..5596
                     /locus_tag="PXB38_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL5354221.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVQIPAPKAFEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVVVAIGEGVNELAIGDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFDKVQKGDVLLEKGADFVIAT
                     SEDDVTAKLFEITNGKGVNVVFDPVGGKEAAKIINAMAQDGRYIIYGALSHDDIAVPV
                     FPILGKHLTVRGYELFEITTVPEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAH
                     EYMASNQQIGKIVVKV"
     gene            complement(5662..6252)
                     /locus_tag="PXB38_001938"
     CDS             complement(5662..6252)
                     /locus_tag="PXB38_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL5354222.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKPFEKVQVQEIIEKALINRTT
                     FYRYYSGKSDLVGKLIKEVKAEYQDLLKKRFESDDLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHTLLKNAFIAHAKRITSDDKNWADKNWAEKNWAEKNWDYQAHIFA
                     TIALESHKYYFEQGKLLPIPQVFEAWIEMVQVLKSV"
     gene            6383..7225
                     /locus_tag="PXB38_001939"
     CDS             6383..7225
                     /locus_tag="PXB38_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl homoserine lactonase family protein"
                     /protein_id="HDL5354223.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFAHPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSSANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNSRFVMSETEKQAINAPNAVMNGYLTMHYPDW
                     FNPCGIAFNDGAFESFEQSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEYDILIGGDA
                     SYSEQDMLAGNIDGVCVDGHLHQQSTAKMRQLCQRKPTITQFAHDEKSEYRLKNKVFT
                     VVKN"
BASE COUNT         2021 a         1570 c         1672 g         1998 t
ORIGIN      
        1 gtgcttttca tcataagcgc tttatgaaac agattgaaag ggataaaatg cctatattct
       61 ctatgtacta aggaattata aaatggcaaa acaaattgca gtattaattg gtagcggcag
      121 caaaacttca tttagtcact tgactgttcg tcacttacaa aaaatggcac ctgcaagcat
      181 tcaattaaac attgtggata ttgcagactt accactttac gaccgtgatt tagatgaaaa
      241 cagcccggca caatacaccc gagtgcgtga agcggttgct gtggcagatg gcgtgttatt
      301 agtcacacct gagcataatg caagcttttc tgcaatgctt aaaaatgcga ttgacgtggt
      361 ttctcgccca atggggcaaa gcaaatggat tggcaaacct gcaggtatcg taaccgttgg
      421 tgcaagccca gcaggtggtg tgcgtgccgc tgatcaagtg cgtactatta cttcaggctc
      481 atttatcaat atgccaactt taccttttgc attaaacgta ggtaacttat ttgcaggcgt
      541 atttgatgag cagggtgaaa ttgcctctga ggcattaaaa agtgcaatgc aaaacttcat
      601 taatgcctat gctcagtttg tagaaaaata ctaatcttat aatgcaaaaa agccgtttat
      661 ctaaaaatat aaacggcttt tttcgtagta aaagaaagga taattaaaga gcctgtttag
      721 gttttaccac accctgcagt acctccctta accaccgatg tgccgtatct tgttcggttc
      781 tttcgtgcca agccatcatc atggtgaagc cttctacctc tataggcgga ggttgtaaat
      841 aaacattggg taaggtcttt gctaagcgtt cgggcaatac tgcgactaag tcggaacctt
      901 gtagcagctg gggcagcagg gaaatatggt ttaccgagac cattactttg cgctgtagtc
      961 ctatcttttg taacgctaga tccaatgttg gcggctgacc aaggcaagat cgattttgtt
     1021 ttgctcgaac aaggttttga tattttgccc ctgcactggc agcaaggcga cttttacatt
     1081 cggagcaagc cgtcttaaac gcagaatcag cggcaaggca ataatttgtt gtacataatc
     1141 cattgcggca atacgcaagg tcatattcag atgttccggt tccaatatgg gtggttgcag
     1201 catggagctg atatcttgca gaatgttgcg tgcggtttgc cccagttgca acgcgcggtc
     1261 ggttggctgc ataccgtgtt gcactcgcac aaataacgga tcgttaaaac tctcgcgcaa
     1321 gcggtttaaa ataccgctca ttgccggttg ggtgatggat aatcgttgtg ctgcccggct
     1381 aacgttgcat tcgtccagca gcaccacaaa agctttgagc aaattgaaat ccagtgttct
     1441 tatatcactc atttttatac ctaactatca caataatcaa tttgaataga taatagcact
     1501 gaattatcat tccacctaat ctatttcatt aaggaaggca acatggcgaa gttcagaaaa
     1561 ttattcaccc cgtttaacat taaaaactta gcattgaaaa accgtgtggt tatgccacca
     1621 atgtgtcaat attcggcaac caacggcgta ccgaacgatt ggcatttcgt gcattacacc
     1681 agccgtgcag taggtggtgt cggcttgagt attgtggaga tgaccaatgt ggcgccaaac
     1741 ggcagaatta cgccaaactg cttaggctta tggaacgatg aacaacaaca ggcattcaaa
     1801 aaactggtag acagcgttca tgctcaaggg gcaaaaatcg gtgtgcaaat cgcccatgcc
     1861 ggacgcaaaa cccaagacga gccggatgca gtggctccaa gtgcaattca ctacggtgag
     1921 ttggattatg ccggacaaaa tctgattaca cctcgcgagc tgacgacaga cgaagtcaaa
     1981 gcattggttc aagcctttaa ggattcggtc aaacgtgccg ttgaggcagg ctttgataca
     2041 attgaaatcc acggcgcaca cggttatcta attcaccaat tctattcgcc gaaatccaat
     2101 cagcgcagtg atgagtacgg ccaagacaaa atgttgtttg gcgagcaagt gattcaggca
     2161 gcacgtgaag tgatgccgtc tgaaatgccg ttaattgtcc gcatttctgc acaagaatac
     2221 ggagaaaacg gctttggctt ggattatggt ttgcaggtag cgaaacgttt tgccgatgca
     2281 ggcgcagatg tcttagacat cagcggtggt ggtgatggtg tattgcatgc aggtaatcac
     2341 cccgaatttt acgcaggtta ccaagtagac tttgcccgtc aagtgaagct cgctacgggc
     2401 aaaccggtaa ttgcagtagg tatgttggat aatccggcgg taggcgatca tatcttaggt
     2461 atgggcgatg cggatttagt ggctgtggga agagccttat tgcgcgatcc gtactgggta
     2521 ttgaatgcgc aatatgacca aaatgcagca gacagcagtg aaatgcagtt tgtaccgaag
     2581 caatatgaac gcggattatt tatgtaaaca accaacgtta aagaccgtct gaacattcag
     2641 agggtctgtt ttttctcatc acgtcaactt atacctaaat atcaaaatta tcaattatta
     2701 aaaataactt aaatctttta tacttatccg tctttcatct agtcttttca gaccgtctga
     2761 aaagactgtt ttgcattttt aggagtgttc catgcaattt ttcaacaaag aagacgtaat
     2821 caatgccttt cattaccgtg catctacccg ttcttacgac ggcagcagaa aaattccggc
     2881 tgaagatttc aactatattc tggaactcgg tcgtttaagt ccaagttcgg taggctcaga
     2941 gccttggcag tttttagtgt tgcaaaaccc tgaattacgg caaaaaatca aaccttactg
     3001 ctggggcatt ccaactatgg aaacctcaag ccatatcgtg gtgattttag cgaagaaaaa
     3061 tgcccgttac gacagccaat atttttctga aattatggat agacgaggtt tgcaaggcga
     3121 agcgcgcgaa aaagccatgg ccgtgtataa aaaattccaa gagaaagata tcggcatttt
     3181 agacagcgaa cgcagcctgt ttgactgggc aagcaaacaa acctacatcg cattgggcaa
     3241 tatgatgacc ggtgcagctt taattggcgt agattcttgt ccgatagaag gtttcgctta
     3301 ccaagaagtc aacgatattt tggcagcgga aggattattt gacccaagcg aatgggacgt
     3361 atcggtgatg tgtaccttcg gttaccgtga taaagaaatc cgccaaaaag cacgtaaaga
     3421 tttcgaaacc gtggtgaaat tcatcgaata aaccggctag gcaaaacggc tattcaacat
     3481 caggtaaacg ccgataccaa gccttaaggc cgtctgaatc cgcattcaga cggcatttct
     3541 tttcaaccac cactcatttt gaggcggcaa cacaacccag ttagtcatga catttattat
     3601 cggtatttta gccggcgtgc tgattgcatt tcaatcagcc atcaacgccc gtttgcgtat
     3661 gcacgtgggt gcggcatttt taacctcgtt tgtctctttc agcgtaggcc tcctgtttct
     3721 actcggactc tcgctcatca tgcaacaaac accagcattt agcctcgaca atttaggcaa
     3781 cgtcccctta tgggcatgga cgggcggatt actcggcatg gtggggctaa cggcaaacgt
     3841 actgatcttc cccaagctcg gcggcgtaca aactgcggtc atgccgattt taggccaagt
     3901 gctgatgggc gtgctgatcg acactttcgc ttggcttaac tcgccttaca tagccttcac
     3961 ggccagccgc ctgtttggca ttggtttagt cttattcggc gtatggattg ccgtggtact
     4021 gccccatctg tccggtctaa aacgcaaaga aaacgcaaat ttatggctgt ggcgcgcagt
     4081 cggcatatta ggcggaacca cattagcaac ccaagccgcc gttaatggcg aattcggcag
     4141 acagctcggc tcatcactcg gcgcagcaac agtctccttc ggtgtcggtg ccatcggctt
     4201 attactggta gtgctgtttt atgaaaaaag cctgccgaaa ctctgccagc caaccgaagg
     4261 caaaccgttt tggatatgga gcggcagcat actgggcagc ctgtttatcc tcgctggcgt
     4321 ttggctcgtc ccccaaatcg gcacaggctc ggtggtgatg ctcgtcctct ctggcctgat
     4381 ttgcggcagc ctgctggtag ataaattcgg tctgttcggc attacacaaa aacccattct
     4441 accgctgcag atcatcggcg ttaccttact cttagccggc gtcgcattta tccgcttact
     4501 gtagccaagc tgacacctct tgcaaaataa cccaaaaaaa ccaccgcttg tgatcggcaa
     4561 gcggtggttt tctttttaaa atttgcaaaa caacttttca gacattgtga aaatgtattt
     4621 atgtaaattt agcaaaagtg ttttgcgatt gatgtgattt ttaaaataaa ttcattgcat
     4681 taaaatacgc ccattatttt cacaaaaggt caaaacaatg agcaaacaaa tccaatttac
     4741 caaaacaggt tcgcctgatg tcttgcaaat cgttgatgta caaatccccg cccccaaagc
     4801 gtttgaggta caaatccaaa tccaagccat tggcttaaac cgtgccgaaa tgatgtaccg
     4861 tgaaggggcg tatgtgattg accctgtatt ccctgcgact ttgggttatg aaggggcagg
     4921 cgtggtcgtg gcgattggcg agggtgtgaa cgagcttgcc attggcgata aggtcagcat
     4981 tattccatct tttatgttta ccgaatacgg cacttatggc gaaatcgtca atatgcccaa
     5041 acacgccgtc gttaagcacc ctgataattt atcaatggaa caagcgtccg ccagttggat
     5101 ggcatttgtt accgcttatg gcggactgat tgagtttgac aaagtacaaa aaggcgatgt
     5161 acttttggaa aaaggagcgg attttgtgat tgccacaagc gaagacgatg taaccgccaa
     5221 actttttgaa atcaccaatg gcaaaggcgt caatgtggta tttgaccctg tgggcggaaa
     5281 agaggcggca aaaatcatca atgcaatggc acaagatggt cgttacatca tttatggagc
     5341 gttaagccat gatgatattg ctgtgccagt gttcccgatt ttgggtaagc atttgaccgt
     5401 gcgggggtat gaactctttg aaattaccac cgtacctgaa aaattggcac aagccaaaac
     5461 ctttgtctat gacggtttgg caagcggtca gttacgccct gaaattgaca aaatctttgc
     5521 ctttgatgaa atggttaaag ctcacgaata tatggcaagc aatcagcaga ttggtaagat
     5581 tgtggttaag gtttgatgat ttgaaagcac cgcttttgtg atgaaagcgg tgttttttat
     5641 ggaaaatttt accagttatt tctaaacact tttcaacacc tgcaccattt ctatccacgc
     5701 ctcaaacacc tgtggaatgg gcaaaagttt gccttgttca aaataatatt tatggctttc
     5761 aagggcgatg gtggcaaaaa tatgggcttg ataatcccaa tttttctcag cccaattttt
     5821 ctcagcccag tttttatcag cccaattttt atcatctgat gttatccgtt tggcgtgggc
     5881 gataaaggcg ttttttaaca gcgtgtgcat atcgtcatac aaatgatggc gtggggtttt
     5941 gatttgccaa agtgccaaaa tcagccgtct tttttccaat aagcggttgc caatggtttg
     6001 cataaatcgc agtaaatcat cgctttcaaa acgctttttg agcaggtctt gatattccgc
     6061 cttcacctct tttatcaatt tgccgaccaa atcacttttg cccgaataat aacggtaaaa
     6121 agtggtgcgg ttaatcaagg ctttttcaat gatttcttgg acttgcactt tttcaaacgg
     6181 cttttcatcc aataactcaa tcaaagcgtt ttggattgcc agatgggttt tgattactct
     6241 taaatcgttc atcttttttc aaaataagca tacattttta taattttatc tgcatatcct
     6301 gctaaatacg agctttttaa tgtttgtgaa aagtgaccgc actttctaca atatgcccac
     6361 gattttttaa tgagaacaca aaatgattaa agtacattgt ctgacaacag gttgggtaca
     6421 aatcaaaatt catcatcaag tggcacgctt ttttgcccat cctgctcgtg tgcttgatgt
     6481 gctgaccgat aaaaaatggt cgcccaaact gccgattggc tgttggctga ttgaacacga
     6541 tgacggtttg attttggtgg atacaggcga aagttcttcc gccaacgaca agggttatca
     6601 accgtggtgg catccattta tgcagttttg cgaacggcgt ggggtcaaaa aacacgaaga
     6661 agtgggcgaa attttaaagg caaacggctt tgacccttta cgcattgaca cggtggtaat
     6721 gacccatatg cacggcgacc acgcaggcgg attgcccaat ttcccaaaca gccgatttgt
     6781 gatgagtgag actgaaaaac aggcaatcaa cgccccaaat gcggtgatga acggttattt
     6841 gacaatgcac tatcctgatt ggtttaatcc ttgcggtatc gcctttaatg atggggcgtt
     6901 tgaaagtttt gaacaaagtc ataaactcac caaagacggc aaaatccgcc ttgtgccaac
     6961 cgcaggacat acgctggggc atttggcggt ggtggtggat atgggcgagt atgatatttt
     7021 gattggcgga gatgcctctt actctgaaca agatatgctt gctggcaaca ttgacggcgt
     7081 gtgcgttgac ggacatctgc accaacaaag caccgccaaa atgcgtcagc tttgccaaag
     7141 aaaaccgacc attacccaat ttgctcacga tgaaaagagt gaatatcgcc tgaaaaataa
     7201 ggtgtttacg gtggtaaaaa attaaggggg aatgaccgct tgttgaaagg caagcggcca
     7261 t
//
LOCUS       DANLUT010000123         7183 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLUT010000123 DANLUT010000000
VERSION     DANLUT010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7183
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..2342)
                     /locus_tag="PXB38_001940"
     CDS             complement(<1..2342)
                     /locus_tag="PXB38_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL5354224.1"
                     /translation="MNYQNEILSAAEALAMGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKSRLTQEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQAYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGTATGYLVK
                     YVSKNIDGFGMDGEFSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEA
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDN"
     gene            complement(2326..2631)
                     /locus_tag="PXB38_001941"
     CDS             complement(2326..2631)
                     /locus_tag="PXB38_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354225.1"
                     /translation="MSQITKSAYTHIHPSWQAPSCTTYRIERYELKRRYALFANRQII
                     VSHIESDVMLLWLLKNEFGWGGNIKQPLSPKDLENLRLLEQAFCLTYTGTFINELSK"
     gene            complement(2628..2870)
                     /locus_tag="PXB38_001942"
     CDS             complement(2628..2870)
                     /locus_tag="PXB38_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354226.1"
                     /translation="MSLITVNDYKIKKDILDADGKQCYQLYQGEELLHDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            complement(3021..3314)
                     /locus_tag="PXB38_001943"
     CDS             complement(3021..3314)
                     /locus_tag="PXB38_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354227.1"
                     /translation="MSLVAMFQKQKVSNSKKAFSCDHFGLMWNQASEEHKRLLLRAAF
                     LQENPEPKPWGAYSREEKSTLHSFGLWFEEFADFQRVMKNDSKLREKRINAPD"
     gene            complement(3323..3655)
                     /locus_tag="PXB38_001944"
     CDS             complement(3323..3655)
                     /locus_tag="PXB38_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354228.1"
                     /translation="MSKQLHYRHKSRWHRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            complement(3738..4010)
                     /locus_tag="PXB38_001945"
     CDS             complement(3738..4010)
                     /locus_tag="PXB38_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354229.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            4143..4388
                     /locus_tag="PXB38_001946"
     CDS             4143..4388
                     /locus_tag="PXB38_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354230.1"
                     /translation="MNTEDQIIELTVEVENLRHQLNAKNIILDDLEGRLTDYQRKRLD
                     RLFERSRRQYLNDLDLEEEQAEALEAICNELESFLAN"
     gene            complement(4487..4696)
                     /locus_tag="PXB38_001947"
     CDS             complement(4487..4696)
                     /locus_tag="PXB38_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354231.1"
                     /translation="MSKSIKRAVSILGGQSNLARACGVTQGAVQKWLNGGGISAEYLL
                     KIEAATNGQVTIREICEELGNATAK"
     gene            4813..5499
                     /locus_tag="PXB38_001948"
     CDS             4813..5499
                     /locus_tag="PXB38_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354232.1"
                     /translation="MSDLSSRLSGLLAQKNLSMNEFAKMVGVTQPAIAKIVNGETRSP
                     KNIVEIADALDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKLQIHGKV
                     EFMQGHIRRV"
     gene            5503..6021
                     /locus_tag="PXB38_001949"
     CDS             5503..6021
                     /locus_tag="PXB38_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354233.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIINDEE
                     FLYMLETGVVPD"
     gene            6039..6449
                     /locus_tag="PXB38_001950"
     CDS             6039..6449
                     /locus_tag="PXB38_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354234.1"
                     /translation="MFIPTSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCH"
     gene            6549..6809
                     /locus_tag="PXB38_001951"
     CDS             6549..6809
                     /locus_tag="PXB38_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL5354235.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLEKC
                     DADRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            6841..>7183
                     /locus_tag="PXB38_001952"
     CDS             6841..>7183
                     /locus_tag="PXB38_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5354236.1"
                     /translation="MMNKHSIWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLL"
BASE COUNT         2100 a         1503 c         1331 g         2249 t
ORIGIN      
        1 taattatcaa caatatgctc aattaaacgc ccacggctat aactcacaaa cattgttttt
       61 tgcgaatttc cccaaatttt taaccgcttg ccgtttagta aatcgtctat ttgatgttca
      121 gtaacccgtc ctcgcattgt aatcagttca tttcttaggc aatttcgagc ctcttcacta
      181 atctgattat tttttgaccc cgtacagtta ctgacacaag tccaaggggg agcaagctcc
      241 cctaataaag cgatagcctc ttcgttaaac cctaacttct cgtagtattt acgtttagcc
      301 tccgctcgtt ccgtttcggt tgcattttct aattttttct gtaattgttg ctcctcccag
      361 tttttaggtt taagttgaat gctccactct ttcgggcgtg tattaatctg cacaccgttt
      421 ttaatgttaa taatgccgct cacttttaat gatggctctt gatacatcgt atataacgcc
      481 tcaccggttt cgcttttgcg ttcggtataa gtaatacgtg caactaaatc ggcacgttta
      541 accaacgcac cgcctaattc ttcggtgaaa acgtcccact caccgctatc tgcaatcaca
      601 cggagtttct ctaaagtttc atcttcttgc tctacactcc ccaaacggcg taactcacgc
      661 cataagctga tcggaatatt acctaactgc tggaactgtc gaatacacca aacgctagac
      721 cacgctccta cacgagcggc attctctttc gcctgaatat ttgcctcgtc tgaaaactcg
      781 ccatccattc caaaaccatc aatgttttta gaaacatatt tcactaaata acccgttgca
      841 gtgcctttct ctttctcaat acgcttgaat ttgcaacggt atttcttcgc acctgcttct
      901 gtaccatcta cctcaagggc ataactcaag aacacacggc gaagcttttc catatcttcc
      961 ggacgagtga atagaattaa atgccagtgt ggggtagcgt cagcgtgagg ttcagctact
     1021 ctaaaaccgt aagccattac gccctcacgg ttgagtttgg cacggatttt cgcccaagta
     1081 ttcacaaggt aagcctgtgt ttccgcaggg cttgctccat tccatttcgg gttcacgcta
     1141 ctggttcttg aaagcattgc gtgatactta gacggagcag tcaaggtaat aaaccacccc
     1201 tcgtgccctt gcttatctgc ataacgctca aatccattca tacgagtgag taattcaagg
     1261 cgtttaattt tcgggttaga ggcagacttc aaccacgttt caaataatga aagttgctct
     1321 tccggctcgg cgatattggc aatgatcatt gatttcaaat aatcaatatt cgctttgcgt
     1381 tgagcctcaa acgctttcaa gcgagcattt gaacagtaag gcgaaagcat attcaccata
     1441 ccgcacgcaa tagctaaatg ctctttcatc tgttcggcaa ttttagataa ctttctagtc
     1501 caccattttt cacaggtcat ttttaaaaag cctgtggtaa tttcctcttg agttaatcta
     1561 ctctttctcg cttttttctg ataaggcgaa tcaatcttga gcttatttac ctctcccatc
     1621 attgcccgat agcattcaag caacacacta taggctgtgt cgccatctgt cgctttgtgc
     1681 atattctgct cgatgttatc ttgctgaatt tggcgaacac gataagcaat acctaaggca
     1741 agctgtttga tttgttcttc ggtttggtaa gcaagcgggc gaatgccgtg agcttttaaa
     1801 tagcgagagc tattctctaa acggcaaagg tgcataggca gttgaatacc tttcacttcg
     1861 gcatcttgtt taattttttg taccgcttgt tgcgtatcaa cacctgcacc gaaataaaca
     1921 ttactatcta attcagctaa aaaatctaaa tcttgatggg attgcttcag aaagtcgaat
     1981 acatcgcaat actggctaat aactgcctca atgcgtggca ttttgcgtgc catttccgct
     2041 ttgaaccagt ctgctgtgtc gtattggctt tggtaatgta gcttttgctt atactgtctg
     2101 ccgaaatgct ctgctaaggc acgaggcaaa cgctcaaaat aagattggcg taacggttcg
     2161 tgaatagggt ctttcgagaa taattcttgc tgaaccattg aagtgtaagg ctgtttgaac
     2221 gcttgatata aacgatcaga atgaagctct aatgcacaag cagaagcacc ggcaaccggt
     2281 gggagtgaaa cacccattgc taacgcttca gcggcagata gaatctcatt ttgatagttc
     2341 attaatgaaa gttccggtat aagttaaaca aaatgcttgc tcaagcaagc ggaggttttc
     2401 aaggtctttt ggactaaggg gctgtttgat attgccaccc cagccaaatt catttttcag
     2461 cagccatagc aacattacat cgctttcaat atggctaacg attatttgcc ggttagcaaa
     2521 cagtgcatac cgccgtttta gttcatatcg ctcaatccgg taagttgtac agctcggggc
     2581 ttgccagctt gggtgaatat gggtgtaggc ggatttagta atctggctca tctcaccgtt
     2641 accgtaaatt taatatccgt tttagctcct gcttcttggt tgatgatatg gttatacaac
     2701 tcatcaaacg gtttatcttc ggcacgaata aacatataag cgatgatttc gcttaaattg
     2761 gtggtatcat gcaatagctc ctcgccttga tacaactgat aacactgctt gccatctgca
     2821 tctaaaatat ctttcttgat tttgtaatcg ttcacagtaa ttaatgacat tcttctaccc
     2881 tctaactaat aaactaaaca ttcggtctga taccgtttaa aaaacgcttg atattggcga
     2941 taagcatagc gattaccggt tttacaccac agcttgtgaa aaaactcaca caattcacgg
     3001 ttacggctca tatttccctc ctaatcaggt gcattaatgc gtttttcacg caatttggaa
     3061 tcgttcttca ttactcgttg gaaatcggca aattcttcaa accacagccc gaatgaatgc
     3121 aaggtgcttt tttcttctct gctataagct ccccacggtt tcggttcagg gttttcttgc
     3181 aaaaaggcag cacgcaataa caaccgctta tgctcctcac ttgcctgatt ccacatcaag
     3241 ccgaagtgat cgcaactaaa cgcctttttg ctattactca ctttctgctt ttgaaacatt
     3301 gccaccaaac tcataccaac ccctaaggat tccctttgct acccaacacc tttttaaaca
     3361 ttgcaaacaa accttgcttt tgggtctgtt tgactttttc cagcttaatc acacgggctt
     3421 tcagcttttc attttggcga atcaaccgat tcacttttaa ctccaatgct tgcagtaaat
     3481 cgccaatctg ctcactgttc agctttgcca gctctacttc atcggctaac cggctttcta
     3541 aattcgccac ccgcttttct tgcagaaata aattaaggcg gcgtttattc atcttcttaa
     3601 ggcggttaag tctgtgccag cgtgatttgt gtcgataatg taattgctta ctcattgttc
     3661 aatctcctga atttagggtg caaaaatctc gccctatgca aataaggctt acttttacga
     3721 ttggttaaaa actgggatta gtcttgctta ggttggtctg ccacaacgcc atcgaacaaa
     3781 tccggcgtgt tcaaatcggc ttccatcaag catttattga tacgcattgc ttccggtcgc
     3841 tctttataaa tcggtgtgcg aacacggata atttgacttt gcacaagttg ctctgtgccg
     3901 cagttattac aataagtaac agcctgaata gtcagcaaac cgattttttc agatgtacga
     3961 acccgtaaat ttttactttt gcaatttgta caggtgtggt ctaaattcat tatttcccct
     4021 acgccttccc caaggctcta ttcacattct ttacgttgat ttcggcttat ctatccccat
     4081 agacaagcga ttattttttg attatttttt acatattatt taaccctcca aaaggaaatt
     4141 ttatgaatac tgaagatcaa attattgaac tgactgttga agttgaaaac ttacgccatc
     4201 aactaaacgc caaaaacatt attcttgatg atttagaagg tcgcttaaca gactaccaac
     4261 gcaaacgact ggaccggctt ttcgaacgtt cacgccgaca gtatttaaat gaccttgacc
     4321 ttgaagaaga gcaagctgaa gctcttgaag caatttgcaa cgagcttgag tcgtttctgg
     4381 cgaactaata ccaaaatcca acaaggtcaa atctaaacgc catttaccgt cttgattacg
     4441 tcttacagta aatttcccac tcgctagccc tgcctgttca gggcttttat tttgctgttg
     4501 catttcccaa ctcctcacaa atttcacgaa ttgttacctg cccgtttgtg gcagcttcga
     4561 tttttagtag atattcagcg gaaattccgc ctccgtttag ccatttctga acagcacctt
     4621 gagtaacacc acaagctctc gcaaggttac tttgaccgcc tagtatggat actgccctct
     4681 taatactctt actcatacgc tcaccttgtt actttagttt caattatatt aatacttgag
     4741 ttttaaaatt gcaactatta ttttaatgat ttattaaaac taaagtatta atattttcaa
     4801 caaggagatg ttatgtctga tttatccagc cgtcttagtg gcttactagc tcaaaaaaac
     4861 ttatctatga acgaatttgc aaaaatggta ggagttacgc aacctgctat agcaaaaatc
     4921 gtaaatggag aaactcgctc acctaagaat attgtagaga tagcagatgc cttagatgtc
     4981 gatgtaaatt ggctcaaaac cggcaaaggt gaagcaccag attttgcgaa aatcggaaaa
     5041 aatccgaccg cttatgaaga ggaaagctca atgcttcgac ttgaggtgtt agatgtatat
     5101 gcctctgccg gcaatggtag ttttgtcacg ggagacttaa ccgcttacac gcacgcagta
     5161 gagtttgaaa atgcctattt tgcacaagtc tttcagcgtg caaatgccaa aggcttatca
     5221 attattaatg tagatggcga ctcaatggag ccaactatcg gtaacggtga tttgctgttc
     5281 gtagatacca ctaaatccgc ttatcaaggc gatggtgtct atgttttcag ctatggcgaa
     5341 aacttatatg taaaacgctt gcagttcgcc ggtgatgaat tgttagtcat ttccgacaat
     5401 ccgctttata aagagtggag aatcacatca gaaaatgagc ataaattaca aattcacggt
     5461 aaagtggaat ttatgcaagg gcatattagg agggtttagg tgatggaaca tcaaaatcta
     5521 actcatcttg tctatattac atcacataaa caaattggtg tttattcgat ttctaatttg
     5581 aatattgatg acctttactt caaaggttac tgtattcaga aaaatagagt tatcacatta
     5641 agagctgatc gcattattaa acaatttgat gatttagctc ttgccgaaaa ttatgccaaa
     5701 aatattcctc aagatgtgtt ttatctattt gattctcttc tgaaccagca acgaaaagaa
     5761 aaaataacac cgatctataa aatcggtttg tgttttactg gatttaagca agctagaaaa
     5821 aatgaattaa ttcaactagc agtagataat gatttgagag tggtacaaaa cgtaactggt
     5881 gcagttgatt ttttaatttt cgataaagag tcgaaaactg ttggaccagc aaaactagca
     5941 aaagctgaaa agttaggtat taaaatcatc aacgatgaag aatttttata tatgttagaa
     6001 actggcgttg tgccggatta ggtttgactt ctcaatagat gtttatacca acatcatcta
     6061 aactaaaaac taacaattac atagaagaat taaacatcaa atcaataggg gaaaccgata
     6121 tgaaaaaagc acttacacta cttgcactat cactatttgc attgcctgta caagccgata
     6181 gcctcgaact tgctcgtaat aaagtaaagc aaatttttat cagtgatgaa gagccaaagg
     6241 taaaagatgc gacttggact gcaccattta tctttaaggt tggagttttt gatgacggca
     6301 cgaaaagaga tggctacgcc gaatatgttt gccaagtttt atacgaccac ggatttaaag
     6361 gtaaaggtgt gttggttagc gtaatcgata taaaaaaact agtccaaaca ggtgattggg
     6421 ttgatcttgg caaagctaaa tgtcattaat acataaggga cagattattc tgtctctttg
     6481 tatttaatca ttaatgaaga aaccttttta ctacacagtt aatactatat tttataatgg
     6541 ggttcataat gaaaaaatta gtcctctcga ttttatttgt tatttcgcct atggctttgg
     6601 cttatagctg caatgaccct atcccttact gcaaagaaat gcaatcttgc gagcaagcaa
     6661 agttctattt agaaaaatgc gatgcagatc gcttagacag ggataacgac ggcatacctt
     6721 gcgaaaatgt ttgtggcaag aaagggaaat ccgagaaaaa agatgacaaa aaatcggata
     6781 aatcaaaatc taaaaaaact tcaaattaga gacaggcgtt gtgcctgatt aaaaggggta
     6841 atgatgaata agcactcaat ttggcactta ttttgcgatg aatccggtat aagcggtaag
     6901 cctttttatg ctttcggtgc attatggata agagaagata aaattagctt atttgaaaaa
     6961 gaaatacaga aattacgaga aaagcactat tgcactgatg aaataaaatg gcaaggtaca
     7021 aattctaaac gctttagtga attttatcgt gaattggtta gttttttctt tcaggctgat
     7081 tatttatttt ttaactgtat tgtagttcaa caagctattg taaataaagc ttttcataac
     7141 ggtgattatg aaatggcaaa acagaagcat tttaatttat tga
//
LOCUS       DANLUT010000124         7046 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLUT010000124 DANLUT010000000
VERSION     DANLUT010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7046
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..893
                     /locus_tag="PXB38_001953"
     CDS             <1..893
                     /locus_tag="PXB38_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL5354237.1"
                     /translation="NKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLLE
                     DFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQT
                     FGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRLT
                     ESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGSI
                     FSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSAQ
                     VQKVQFFVEWIQQKMKECCA"
     gene            969..1652
                     /gene="yjjG"
                     /locus_tag="PXB38_001954"
     CDS             969..1652
                     /gene="yjjG"
                     /locus_tag="PXB38_001954"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL5354238.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFAKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            1649..2632
                     /gene="cysB"
                     /locus_tag="PXB38_001955"
     CDS             1649..2632
                     /gene="cysB"
                     /locus_tag="PXB38_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL5354239.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            2633..3277
                     /locus_tag="PXB38_001956"
     CDS             2633..3277
                     /locus_tag="PXB38_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354240.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(3351..4400)
                     /gene="ansB"
                     /locus_tag="PXB38_001957"
     CDS             complement(3351..4400)
                     /gene="ansB"
                     /locus_tag="PXB38_001957"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL5354241.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGKGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            4664..6301
                     /gene="pyrG"
                     /locus_tag="PXB38_001958"
     CDS             4664..6301
                     /gene="pyrG"
                     /locus_tag="PXB38_001958"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL5354242.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYRQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            complement(6470..>7046)
                     /gene="nfuA"
                     /locus_tag="PXB38_001959"
     CDS             complement(6470..>7046)
                     /gene="nfuA"
                     /locus_tag="PXB38_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL5354243.1"
                     /translation="ISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAECGVSYCP
                     PNAVEETDTEFKFNSFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNAKMRKVAD
                     DAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLKE
                     GIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
BASE COUNT         2117 a         1292 c         1509 g         2128 t
ORIGIN      
        1 tgaacaaaaa acttccacca ctcaatgcat tgaaagcatt tgaatctgct gcacgccatt
       61 taaattttac taaagcggca gaagatcttt tcgtcacaca agctgcagtg agccaccaaa
      121 ttaaactatt agaagatttt ttaggtgctt ccctgttcca tcgccgtaac cgtttgctgg
      181 aattaactga gttaggcgca caatatttct atgaagttca gccattatta gaacaaattg
      241 ctctcgcaac agataaaatt aggcagcaaa gtagtcgtca aattctgact attagcgtac
      301 cacaaacatt tggtatgcat tggttagtcc cacgtttggc ggatttccac gaaaaatatc
      361 cagaagtgga agtacgtatt aagggtgttg atcaagatga gggattatta ggtaaagaaa
      421 cagatgttgc tatttattat ggtaaggggg attggcaagg tctggaatct atccgtttga
      481 cggaatcccg tattgttatt ttagcttcgc ctgagtattt atcgcaaaat accattcatt
      541 taccggcgga tttagcaggt aagcatttat tacattcctc cacccataat aagtggaaaa
      601 gaatggttga acatttgcat atagaagata tagtagatgc ggaaactggc tcaattttta
      661 gccatacttt tatggtgctt caagctgcaa tgcaccaaca aggcattgcg attgccaacc
      721 agttgttggc acagcacgaa attgaaaaag gtactttaat agagcctttc ccaaccacat
      781 tgtttgatga aaaatcgttc tatgttgtct atccttcgca atcagcccaa gttcagaaag
      841 tacaattttt tgttgagtgg attcagcaaa aaatgaaaga gtgttgtgct taagcgtggc
      901 tttatcagcg gtatgcgaaa aattagaaaa atttgaccgc ttgttatcta agttaaaaaa
      961 ggaatattat gaaatatcaa tgggtattat ttgatgctga tgaaaccttg ttttcattta
     1021 attcttatct tggtttaaaa gcgatgctgg ctcgttacca aattgatttt agtgaacaag
     1081 attatcaaga ctttcaagcg gtaaataaac cactttgggt ggcttaccaa aataatgaga
     1141 tcactgctca agatattcaa accagacgtt ttgcaaaatt atctgctcaa acaggcgtag
     1201 atccgctaca acttaatcaa gagttaatgg cggagatggc attcgtcagt cagcctttag
     1261 aaggtgtaat ggatatgtta aatgctttat atggtaaagt aaaaatgggc attatcacca
     1321 atggttttac cgatttgcag caaaaacgtt tagataatac tcaaacttca catttttttg
     1381 atattgtagt gatatcagaa caaattggtg ccgcaaagcc tgatcgccaa gtgtttgatt
     1441 acgcttttgc attaatggac gaatttgatc gtactaaagt gcttatggta ggcgataccc
     1501 tcgcttctga tattttagga ggtaataatg ctggaattga tacttgttgg ttaaatttgc
     1561 ttagtaaaga gaatgatacg gatattaagc caacttacga agtgcatacg atgcaacaga
     1621 ttattgcgat tgtagagggg aaatcattat gaagctacaa cagttacgtt atatcgttga
     1681 aatagtaaac cagaacttga atattaccga ggccgcagag gtgctttaca cttctcaacc
     1741 ggggattagc aaacaagttc gtttgttgga aagtgagttg ggaattaata tttttgagcg
     1801 taacggtaag cacgttaagg ggctaacgcc tgctggtgaa aaaattgtgg cgattgctcg
     1861 tgaattattg gtaaaagccc agagcattaa atcggttgct gaagaacaaa ctcgacccaa
     1921 caaaggcatc ttacgcattg cgaccaccaa tacccaagcc cgttatatgc taccgagtgt
     1981 aattgagaag tttaaggctc gctatcctga agtaagtttg catttgcacc aaggctcccc
     2041 gaatcaaatt tatgatgctt tggtggctgg agaagtggat ttagccatta ccacagaagc
     2101 tcaatattta tttgatgaag cggttttatt gccgtgttat tggtggaatc gttcagttat
     2161 tgtcaaacca gagcatcctc ttgcggcttt tgtgaaccaa agtaaaaatt tgactgtcga
     2221 acaattaggt agatatgatt tgataaccta tacttttggt tttacagggc aatcggattt
     2281 agatcatgcc ttcaataagg aaggtatttt gcctaatatc gtatttacgg cgacagatgc
     2341 tgatgtaatc aaaacttatg tgcgcttagg cttaggggtt ggtattatgg catcaatggc
     2401 acatacggaa acggataaag acttagtcgc tatcaatgca agtcacctgt ttcaaccgag
     2461 tatgacgcaa atcgccttta aacgaggaac ttttcttcgt aactatatgt atgattttat
     2521 taattatttt tcgccacatt taacacgggt acaagtggag aaagcggaac aattacgaga
     2581 taacaatgca atttcaaggt tgttcgaaag tatatcttta gaggagaaat agatgagaat
     2641 ttggcagaag ttagcgagcg taatcgtggt cactttgggc ttgatttcaa acgccagtgc
     2701 ggagaatttt aagttgaaat acagctcaaa ttatttaatg ccagcctaca ttaactttaa
     2761 taacggtggt ggccaatata atattcaggc aaaaattaat gtgcctttat ataatattgt
     2821 cttttctgcg aagggaacag aaaaaaacga acaatttcat atgttgagct accgagatac
     2881 ccgtaacggc aaaacttatg cgatggcaga aattgattct aaaacggtaa aatatggcaa
     2941 agtgaaagag ccactaaaag aagaagcgct gactatgcca acttatgatt tgttcaccac
     3001 agcctttcag ttgagctatt acgataaatt accgagcagt tttcaaacta ctaacggtaa
     3061 aaaactttac ccaacaccga atgtgcagct acgcaaagcc caaaaagagg taaaagtagg
     3121 cggcaaaacc taccaagaaa ttacctacaa gtttagaacc agtgataaaa aagacattac
     3181 ggtgaaaaaa tttgaaggtg aaaaattccc tcgctatatc gcctatagtc gtgatggcga
     3241 caattatgag ctaacttttg atagctttgt aaaataataa agattagtaa tgagacaagc
     3301 ggtctatttt gtgatttgtt ttgcaaaata gaccgcttgt tatttacttt ttagaaatct
     3361 tcaaaatatt gttgaatagt ttttatatca tttgtttgtg ttaaggcgag ctgcagtaat
     3421 actcgagctt tttgaggatt taatgtgccg gaagcaataa aaccatactt gctatcatca
     3481 atttctgcat ctcgggtagt atatccggtt ggcactcgag acgagcgaac cacggtaatt
     3541 ccttttttag ctgcttcttc aagtaaagcc aaattagccg cattcatatt gccattgcca
     3601 actcctgcaa ccacgatgcc ttgataactc gcatctaata atgcttgaag cggttcggtt
     3661 ggcatatttg aataagcata aataatgccg acttttggca attccgttaa ttcatctact
     3721 ttgaaagggg tgtttacggt gtgtttactt tcaggagagc gctcataatc aactttgcta
     3781 ttatggatat agcctagtgc gccaaagttt ggtgagttaa atgtttgcac tgatgtagta
     3841 ctggtttttg taacatcgcg agcgcccaat acaatatcat tcattgcaac caacacccct
     3901 ttgccactag atttagaatc tttggcgaca acaactgagt tatataaatt taatacgccg
     3961 tcggcacttt tttcagttgc tggtcgcatg gcccccacta atactacggg tttttcgcat
     4021 tttacagtca tatcaaggaa gtatacggtt tcctccatag tgtctgtgcc gtgcgtaata
     4081 acgaagccat ctgtgtttgg gcattgttga ttaattgctt ttgccagttt tagccatact
     4141 tcatcagaca tatcctgaga tccgatttta acgatttgtt ctcctttgat atttgctaat
     4201 tttttaatat ccgggacggc ttctatgagt gtttcaatat ttagctgccc agcttgataa
     4261 gctgaggttg ccgtattttt ttggctaccg gcaattgtcc ctccagttgc aagaattgta
     4321 atattaggta ggtcggctgc ttgaattggc atagtagcaa tgcttaacag agttggcagt
     4381 agtaattttt tgattttcat tgtatcgtct ccagtattag aaaaacaggt attatgatat
     4441 ctataaacat gtaggttaat tctgatctat cgcaaataat agtgtattaa ttaagattag
     4501 tcggcattat tgaaaaaaga attaatctga ctgcttgccg attttccatt agcaaaaaaa
     4561 tgtaatttga tgtaaactac tttcccgtcc tgatagtttc ttttttacga agtaaactga
     4621 tattctgaat ttccaaccta atcaatcagc aaaggcaatc acaatgacaa cgaattatat
     4681 tttcgtcaca ggcggtgttg tatcttcttt agggaagggt attgcggcag cctctttagc
     4741 atctattctg gaagctcgtg gtttaaatgt aaccattatg aagcttgatc cttatatcaa
     4801 tgtcgatccg ggtacaatga gtccaactca gcacggggag gtatttgtga ccgaagacgg
     4861 tgcggaaacc gatttggatt taggtcacta cgagcgtttt atccgttcaa aaatgagcaa
     4921 agccaacaac tttaccagcg gtaaaattta ctctgaagtg ttgcgtaaag aacgccgtgg
     4981 cgactattta ggtgcaacca ttcaggttat tccgcatatt accaacgaga ttaaagcccg
     5041 tgtgttagaa ggcggtaaag ggcgtgatgt cgccattgta gaagtaggtg gcacggtggg
     5101 ggatattgaa tcactgccat tcttagaagc actccgccaa ttagcggtgg atatcggtcg
     5161 tgaaaaaacc ttgtttatgc atttaacctt agtgccttat attccaaccg caggggaagt
     5221 gaaaactaag ccgactcagc attcagtaaa agagttgctt tcaatcggta ttcagccgga
     5281 tgtgttaatt tgccgttcag atcgtgctat tccggaaaat gagaagaaaa aaatcgccct
     5341 tttctgtaat gtgccggagc gtgcggttat ttcgcttaaa gatgtagatt cgatttatcg
     5401 cattccggaa ttattgaaat cgcaagggtt agattccttt gtgtgcgatc gtttccgttt
     5461 agattgcaaa gaagccgatc tttcagagtg ggaacaagtg ctataccgcc aagcaaaccc
     5521 aaccggcgaa gtgactatcg gtatggtcgg aaaatatgtg gaattacctg atgcgtataa
     5581 atcggtgaat gaggctttga aacacgcagg tttaacgcat cgtttaacag tgaatattaa
     5641 atacattgat tcacaagata ttgaaaccaa aggcacagag ttattggcag gcttagacgg
     5701 cattcttgtg ccgggcggct ttggctatcg tggcgtggaa ggcaaaattc gaaccgcaca
     5761 atatgcccgt gaaaacaaga ttccttactt aggtatctgt ttaggtatgc agatcgccct
     5821 aattgaatat gcccgtaatg tggcaggttt aaccgaggca aattcttctg aatttgataa
     5881 agattgctca cagccggtga ttggcttaat taccgaatgg caagatgcgg aagggaatgt
     5941 ggaaacccgc agcgatgagt cagatttagg tggtacaatg cgtttaggct cacaacaatg
     6001 ccatttaatt gaaggctcaa aagctcgtga gttatatggt gcggaaacga ttgttgaacg
     6061 tcatcgccac cgttacgaag taaacaataa gctgttacca caaattgaag cggcaggctt
     6121 aaaagtgagc ggtttatcgg cagatcgtaa attagtggaa attattgaag tgccaaatca
     6181 cccttggttt atagcagcac aattccatcc ggaatttacc tcaactccgc gtgatggtca
     6241 tccattattt gcaggttttg tgaaagctgc gaaagatcac caagagagtc gtaaggctta
     6301 atcaaactta acaagcggtc gaatttactc atttttttgt acaaacgctt gcgtttgaac
     6361 atcggctttg ctgatggcac gaagtgcgag cgaaagcgag taaatttgac cgcttgctca
     6421 ttaattataa gaaagggata aatcaaatga tttatccctt ttagtatttt taatagtaag
     6481 aatgttcacc gtgttggtgt tcggtaatat ctttcacacc aactaattca tcagggaaca
     6541 ttgccagaag ctgtttctca attccctctt ttaaggtcac atccaccatt gagcaaccgt
     6601 tacaaccacc gccgaattgt agcacggcat atttatcttc ggtgatttca attaaggtca
     6661 ctttaccgcc gtggctggca agttgtggat tgacttgggt ttgaatcaca taatctaaac
     6721 gctcgataaa cggtgcatca tcagccactt tacgcatttt ggcgttaggg gctttgaggg
     6781 taagttgtga acccattggg tcggttacat aatcaatttc cgcttcgtct aaaaacggta
     6841 agctaatatc atcgacaaat gcagagaaac tgttaaattt aaattcggta tccgtctctt
     6901 caactgcatt gggtgggcag taagagacac cgcattctgc ccccggtgtg ccgggattga
     6961 ccacaaaaat acggatatta gttccctctt cttgctgttc taatagtctg gcaaaatggg
     7021 cttgtgctgc atctgatatt gaaata
//
LOCUS       DANLUT010000125         7032 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLUT010000125 DANLUT010000000
VERSION     DANLUT010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7032
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1626
                     /locus_tag="PXB38_001960"
     CDS             <1..1626
                     /locus_tag="PXB38_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5354244.1"
                     /translation="KTLSREDLSEEERTAKTIDSVKLRIYLNEQARNRKNYINGFVPT
                     DWISEITDQMTKSKNLWLKYEEESKTTLKPYQEETISSLIKDEINKKMAEIDTTTLEI
                     ANKERELEELENQINAFTLTDEEKLAEDVKNDLISKLDEAKAALAKNQQTLKEKHDEL
                     LGLNNKLDSSPLVKNGKNALAEGTNAFASGENAIAFGTDSQATGNNAIALGANSKANA
                     ESAIAIGKGAQALKEKALALGENAIANGASAIAIGDNIGVSGEKAVGIGSNAIVSGNG
                     AISIGSDNRVSHKNAVAIGSNITQTAENSVNLGNESATTVELTAETAGTTQYAHSEIL
                     GEIYKFAASEPAGVVTVGAKGKERRIQNVAAGLVSETSTDAVNGSQLYAVAKAANEGK
                     IGVVRYTNTDGVVRIANHLDGNEVNISNKSGNTRLLTGLSEGLAPTDAVNKAQLDREI
                     GVVNNKISAVEKEVKKVKGSVSNAIAIASLPQVSVPGKRQLSVATGHTLGTTSVAVGL
                     NGLSDNGRISYKLGTSVSQNSNFAVGAGIGFSW"
     gene            1645..2358
                     /locus_tag="PXB38_001961"
                     /pseudo
     CDS             1645..2358
                     /locus_tag="PXB38_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252768.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2667..3107
                     /locus_tag="PXB38_001962"
     CDS             2667..3107
                     /locus_tag="PXB38_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5354245.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            3133..3420
                     /locus_tag="PXB38_001963"
     CDS             3133..3420
                     /locus_tag="PXB38_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354246.1"
                     /translation="MKKATLMALAGALTMATATVNAETTSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            3521..4444
                     /locus_tag="PXB38_001964"
     CDS             3521..4444
                     /locus_tag="PXB38_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL5354247.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            4434..5174
                     /locus_tag="PXB38_001965"
     CDS             4434..5174
                     /locus_tag="PXB38_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL5354248.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDAEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
     gene            5393..5974
                     /locus_tag="PXB38_001966"
     CDS             5393..5974
                     /locus_tag="PXB38_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5354249.1"
                     /translation="MSQPALRQISPSQLEDIRLQMVKFAFLQLKNNELAEDVVQEAFV
                     SAYKYADSFKGESALKTWIFAILKNKIVDLVKAKGKLVAVSELMEEDDHDLADKLFNE
                     NGGWDKDAYQSNEWKNTESHTYSAQFWQVFEFCLNNLPANQARVFMMRSHLEMETEEI
                     CAECEISPANVHTLLYRARLQLQVCLSQKWFGG"
     gene            5975..6145
                     /locus_tag="PXB38_001967"
     CDS             5975..6145
                     /locus_tag="PXB38_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5354250.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLTKEFNS"
     gene            complement(6283..6858)
                     /locus_tag="PXB38_001968"
     CDS             complement(6283..6858)
                     /locus_tag="PXB38_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5354251.1"
                     /translation="MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPV
                     DLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEK
                     LTARKLGKRFTYIREQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLG
                     HTSVQMTKTYIRKAPIVTPIKESVPSSKHQS"
BASE COUNT         2264 a         1298 c         1452 g         2018 t
ORIGIN      
        1 aaaactttat ctagagaaga cttaagtgaa gaggaacgta cagccaaaac aattgactcc
       61 gttaaattaa gaatatatct caatgaacaa gcacgaaatc gtaaaaatta tattaatgga
      121 tttgtaccta ccgattggat ttctgaaatt acagatcaaa tgacaaaatc caaaaatcta
      181 tggttaaaat atgaagagga atccaaaaca acattaaaac cataccaaga agaaacaata
      241 tctagtctta taaaagatga aattaataaa aaaatggctg aaatagatac tacaacacta
      301 gagattgcta ataaagaaag ggagctcgag gagcttgaaa accaaattaa tgctttcact
      361 ttaactgatg aagaaaaact tgcggaagat gtgaaaaatg atttaatctc aaagcttgat
      421 gaggctaaag cagccttagc aaaaaaccag caaacgctca aagaaaagca tgatgaatta
      481 ctagggctaa ataacaaatt agatagctca ccacttgtta aaaacggtaa aaatgcactt
      541 gcagaaggca cgaatgcctt tgcttctggt gaaaatgcca tcgcattcgg cacggattca
      601 caagctacgg gtaataacgc tatcgcacta ggtgcaaatt caaaagcaaa cgcagaaagt
      661 gcgattgcaa ttggtaaagg tgcacaagca ttaaaagaaa aagcccttgc tttaggcgaa
      721 aatgccattg ccaacggggc atctgctatt gcgattggtg ataatatagg tgtttctggt
      781 gaaaaagccg taggtattgg ttcaaatgct attgtatctg gcaatggggc aataagtatt
      841 ggttctgata atcgcgtttc gcataaaaat gcagtagcta ttggttcaaa tattacccaa
      901 acggctgaaa actcagtaaa tttaggcaat gagtcagcaa caaccgtaga acttaccgct
      961 gaaacagctg gcacaacgca atacgcacat tccgaaattt taggtgagat ctataaattt
     1021 gccgcctcag aacctgctgg tgtcgtgact gttggggcaa aaggtaaaga gcgtcgtatt
     1081 caaaatgttg ctgcaggttt agtttctgaa accagtactg atgcagtaaa tggtagccaa
     1141 ttatatgccg tagccaaagc agccaatgaa ggtaaaatcg gtgttgtgag atatacaaat
     1201 acagatggtg tagtaaggat tgctaaccat ttagatggta atgaagtcaa tatcagcaat
     1261 aagtccggca atactcgcct cttaactgga ctttctgaag gtcttgcacc aacagatgct
     1321 gtaaataaag cacagcttga tcgtgaaata ggtgtagtaa ataacaaaat cagtgctgta
     1381 gaaaaagagg taaaaaaagt gaaaggttcg gtatcaaatg ctatcgcaat agcaagctta
     1441 cctcaagtat ctgtaccagg aaaacgtcaa ctctctgtcg ctacaggcca tacccttggt
     1501 acaacttcag ttgcagtagg tttaaatggc cttagtgata acggtagaat atcttacaag
     1561 ctaggcacat ctgtatcgca aaacagtaat tttgcggttg gtgctggtat tggtttctca
     1621 tggtaaggaa acataatgta ttgtatgact aaaaaaatga attctcattt tgtaaaggca
     1681 aacaaaatac ttgctgctat gttactttta gctccattag gtttctctta tgctgatgag
     1741 gcgagcttaa caaaatacca gcaagcacgt attgcggtaa cttataaagg taacgttggt
     1801 gatctctctc aacaactcgc taagaagtta ggaattggtt attatgccat acagcataat
     1861 tcatctattc aagtaaagtt gaaacagacc gataacgata ccttgcaaca tttgctcgat
     1921 caaataaacc agcaacttaa acagcaaaat agtaaccaac aattacgctt tgatatgcta
     1981 gatgataaag tagtgttggc tttagttggc aacaatgtca gtttagctcc aactcaattt
     2041 attggggatg tggtctatga taataaagct ctagttcaag aagagaaaga gcgtaatatt
     2101 atctctgtac ctcctcaatc aaataaagga tcatatagcg aggttagcag tgctgaagaa
     2161 aaaaagctcg gtgatatttt agcattgagt caagatacga aattaattag taaatatgct
     2221 aaacgaaaag tgcctaccta taatgtggtt aaccaacacg cattagggtt agaaaatatc
     2281 cgtagtacta aaatcagcac cttcttaatt tttaaagatg gcattgatat gagtaaatat
     2341 aaagttgaag gtcaatttca ggatatcgct atcgtaggta acgtagttgg aattttacat
     2401 cgtcagaaag taccgccgaa agaaatttta attacagctc ctgataaaca gcaatataaa
     2461 ctagctaaag ctaattaaat acccttgcaa aaaaacaaat aggttaaatt ttgcactgaa
     2521 tttaacctat ttttatttat ctataaaaac aggttataat ttttcacaca ttttttgtaa
     2581 taaacgtata cttattctgt ctaataacca catttttagt taggagcatt tttatgtcat
     2641 cattttcaac tcagtcagct tgctcaatga cagcttgtaa aaacggcttg ggctttcttg
     2701 tattacgtct atttcttgct tatgaatttt ttgaagcagg gttatcaaaa ctaaacggtg
     2761 aaaattggtt tgcctcaatt caagagagct tcccattccc ctttaacgta ctaccagccg
     2821 atcttagctg ggctattgct agcggagcgg aaatcttact gcctatttta ctcactttgg
     2881 gtctgttcac ccgcttcagt gcgttaggat taatgatctt aacagcggta gcgtggtatg
     2941 ctgttcacgc tggcaatggc tacaatgtct gcaacaatgg ctataaaatg gcactcattt
     3001 atttagtgat gttagtacca cttttattac aaggtgctgg ctcgctctct ctcgattttc
     3061 tgttacagaa aaaatcccca accaaacgct ggttgaaatt cctttaatcc cttaatttat
     3121 ggagaatttt taatgaaaaa agcaacttta atggcattag ctggtgcatt aactatggca
     3181 accgcaactg taaacgctga aactacatca gtgaaagcag atgcttgtat ggaagtaaaa
     3241 gatggcaaat gtgtaaaaac caaagctaca gaaggtaaat gtggcgaagg caaatgtgga
     3301 gcaacctctt ctgagccaaa agcaaccgaa ggtaaatgcg gcgaaggcaa atgtggagca
     3361 acggcaccaa aagcggcaga aggtaaatgc ggtgaaggca agtgtggagc ttctaagtaa
     3421 gtagcgaagg tgcgttttct aaacgcacct aacctcttat aaacacaatc tacaagcggt
     3481 taaattccgc tgattttttg caaattaaag gaacaagacg atgttaaaat ttactggtgc
     3541 tggtctaggc tatcgccgtg acctagcgga cggattttta tctctcacag ataacaatat
     3601 aattaatttt atggaagtag ccccagaaaa ctggctgaaa atgggcggtc aggctcggta
     3661 taacttcgat aaagtcgctg aaaaaatccc tgttattatt cacggtttat ccctctctct
     3721 cggcgggcaa gcgcctttag atatgacgct actaaaaggg atcaagaata tgcagcagca
     3781 gtataactcc tttttcttct ctgatcattt aagctattgc gaatgtgaag ggcatttata
     3841 tgacctgctg ccaatgccgt ttaccgatga agccgtacat cacgtggcaa atcgcattaa
     3901 acaagtgcaa gattatttag gtatgcaaat ttcccttgaa aatacgtcct actatctgca
     3961 ttcaccaacc agtacgatga atgaggtaga gtttctcaat gcaattgccc aagaagcgga
     4021 ttgtggcatt caccttgatg tgaataatat ttatgttaat ggtgtcaatc acggcttgct
     4081 tgatccattt gtatttattg atcaagtgga taaatctcgt gtcaattata ttcatattgc
     4141 aggccacgat gaagatcacg gtgcggcgga agacgttaaa atgaccgagg gtgaatcatt
     4201 taatatggta aaaggcgaac tacgtcatct gccaacttta ctggtcgata cccacggaga
     4261 agctgtacaa aaaactgtgt gggatttact agagtacacc tatgaacacc taccgcatat
     4321 tccaccaaca ctgttagaac gggatttcaa cttcccaccg tttcaagaac tgattagtga
     4381 agtacagcac attatgagct tacagaaaaa atatgcaaaa acgaggctaa aaaatgccgc
     4441 ttaaactcgt tgaagaacac aaaccgttac tcaaagagat tcaagccgag tttgcgaatg
     4501 caattcgcca taacgatgta aagctgatga gtggtaatat ctctccacag cggcttggcg
     4561 tctattctcg cttggttcgc aataatactc tcggttttat cgaccgttgt tatgtacagc
     4621 tccctcaaca tctaagtcct gaagaatggg ttgccgttaa agaaaaattt atacgagaag
     4681 gtaaggctca ttcgcccttt ttccaagata ttgctggcga atttctcaat ttttgccgag
     4741 aaaatggttg tatgccacca cacttgcttg agttgatgga ctttgaaaat gctcaattac
     4801 tggctgaggt atcaatggca accgtaccat cagaatttga atgggataac gatactataa
     4861 tgcagttttc tggtgcagct gagctgcgtc aatatgcggt aaactttatc cgtagcgagt
     4921 tcaaacagtt tgactttgag ccgaccaacg tactgatttg gcgagatgcg gaatttggca
     4981 tctattacaa ccgcttggaa gagctggatt tcttcctgct tagctcgttg caagaggggg
     5041 caaattccct gaatggctta ctagcagaac tcagcgagtt taccgagcaa aatctggagc
     5101 taaaagcctt gttacgccaa ctttgggaaa aatgggttga agcagaggtg atttatcctg
     5161 tctatcctga atgaggataa ggtatgtgat atgtactgac atacatagta ggggcgggtc
     5221 ctgtgcccgc ccgactaata ttaagataac gggcgggcac aggacccgcc cctacgatta
     5281 gtatgttagg tttaaaaata cttcatacca atatccccta agttgggtaa aaccttatga
     5341 aataggatac aagcggttag tttctctcaa ttttttacca aaggatcacg caatgagcca
     5401 accggcttta cggcaaatat ccccctcgca gctagaagat attcgtctgc aaatggtgaa
     5461 gtttgccttt ttacagttaa aaaataacga acttgccgaa gatgtggtgc aagaggcgtt
     5521 tgtcagcgct tataaatatg ccgacagctt caaaggtgaa agtgcgttaa aaacgtggat
     5581 ttttgcaatt ttaaaaaaca agatcgtaga tttagtgaaa gccaaaggca aattggtggc
     5641 agtatctgag ctgatggaag aagacgatca cgatcttgcc gataaattgt ttaacgaaaa
     5701 tggcggttgg gataaagatg cttatcaatc taatgagtgg aagaacaccg aaagccatac
     5761 ctattccgct caattctggc aagtatttga attttgccta aataatctgc cggcaaatca
     5821 agcaagggtg tttatgatgc gttcccattt ggaaatggaa accgaagaaa tttgcgcaga
     5881 atgtgagatt tcaccagcaa atgtgcatac cttactgtat cgggcaagat tgcagttaca
     5941 ggtctgttta agtcaaaaat ggtttggagg ttaaatgtta aaatgtaagc aaattaccga
     6001 attagtttct ctgtcccaag aacaaaaact gacattaaaa caacgtgtta atgtgcaagt
     6061 tcatttaatg ctttgttctc gttgcagagc ctttagccaa aactgcaaaa ccgtagataa
     6121 gctaacgaaa gaatttaact cttagcgtaa aagcaagcgg taaaattttt aataaatatt
     6181 atcagtaata acgagtaaca aaaattactt atctttcaat ctattataag tgatttttat
     6241 gtaaacgttc cgaaaaaatg caaaatgttc cgaaactgtc ttttaagact ggtgttttga
     6301 ggagggaaca ctttctttga taggggttac tattggggct tttcgaatgt atgttttggt
     6361 catttgaacg ctagtatgac ctagttgttg gcgagcggct tcttcaccta gagaaagggc
     6421 tttatctgtt cctgatttag ctcttagatc ccgaaattgg aatgccatta tttcatttgc
     6481 gtattccggg ttattcttga ccgcttgttc ccgaatataa gtgaaccttt tacctagttt
     6541 tctagcggtt agcttttccc ctttcttagt gctgaataag tgtgttccag tagctttctc
     6601 cagcctatct tggataatat cagccagttt tcccactatc tcaatacgta gtttggcttg
     6661 tgttttttgc tgaacaatat ggagataacc atcaaaaatg tgttctttcc ggatattgac
     6721 caaatcgaca ggacgttgtc cggtgatata ggcgagatcc attaagtctc tcatatcctg
     6781 atctgccact tcatatacca tctgaaatat attgttctca acgtaaattt cacgctttct
     6841 gatagggtag cgtttcattc cgatattagg gcttggtaag tttgtataac cccactctcg
     6901 agcgtattgc caaatatgac tgaacattga aaattcgtta ttagcagatc ccggtgtgtc
     6961 ttttcgccaa gtcatatact ctcggatatg ttgaggggtg atttcttcga gaggagcgtc
     7021 attaaagaat ag
//
LOCUS       DANLUT010000126         7020 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLUT010000126 DANLUT010000000
VERSION     DANLUT010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7020
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            220..1971
                     /locus_tag="PXB38_001969"
     CDS             220..1971
                     /locus_tag="PXB38_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5354252.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EEIANELCISKRTVDKHIENIFAKTHTESRTLLAVFAITEHLVCLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTPSTRHELPMFTISHHHTRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQIATAGFCVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAK
                     LMTQVHNLTPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYEQFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     gene            2113..3228
                     /locus_tag="PXB38_001970"
     CDS             2113..3228
                     /locus_tag="PXB38_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5354253.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     regulatory      3232..3427
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            3446..5932
                     /gene="torA"
                     /locus_tag="PXB38_001971"
     CDS             3446..5932
                     /gene="torA"
                     /locus_tag="PXB38_001971"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5354254.1"
                     /translation="MKKQDSIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTIRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKADNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     gene            6073..6311
                     /locus_tag="PXB38_001972"
                     /pseudo
     CDS             6073..6311
                     /locus_tag="PXB38_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252355.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase N-4/N-6"
     gene            6350..>7020
                     /locus_tag="PXB38_001973"
     CDS             6350..>7020
                     /locus_tag="PXB38_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5354255.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSVWLSMMYPRLE
                     ILRDLLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNLFCYAKNKNELNDLTYLETSGDETYPLYNAGNSREILVFPPRSIKFKKHSDGLYK
                     PTIFSKKTSSITLISELIIEDQWNKNTVEIEGEWRYSQKSIDEQLKNGDYYIIKSLDF
                     RPRRV"
BASE COUNT         2197 a         1401 c         1493 g         1929 t
ORIGIN      
        1 aaaatttgtc tttaattttt agagttagga aataatgctc ggagtcttca ataaattggt
       61 tttcatttta tggtgagaaa cctaattagg caagaggtat aatttaaatt gtatgctcta
      121 cctataaaaa tctggcaacc gttgcttagt ttgatttata tcatattaat gccgagataa
      181 ttttgctatt ttagctaacg tttttagttc gaggtgagaa tggataaacg tagccgatgg
      241 tcttgtttag taaatgaaca aggcgaaata tcagaatggg aagacaaagc aggggcagac
      301 tattttgctg aattaccgca aatttgccac tatgcacagg cattgctcta ttcagataaa
      361 aatagcttgc agttttacta tagttcaaac catcaatggc ttaagatcag cctagaacgc
      421 caccaatcgt ttgtattgac tcaagcagag cataccgatt tgccttatgg actgagtaaa
      481 agggagattg agcttctcac tctaattagc agtggtttga gcaatgagga aatcgccaat
      541 gagctttgta tcagcaaacg gacagttgat aaacatatcg aaaatatttt tgcaaaaaca
      601 cacaccgaaa gccgaacctt attagcggtt tttgctatta ccgaacattt agtctgtttg
      661 cctacaccgg gaaagctaac ccaatccatt cttgccagct ttaacattga acaactggca
      721 ttgcaaatta tcgcgaaaaa acaaccgctt gtaacgcctt caactcggca cgaactaccg
      781 atgtttacca taagccacca tcatactcgc ccgatcatta ttggcgtgcc ttatgttgaa
      841 cagggtattg ggcaaattga tacccgagag ttacttaacg gcactcaact tgcggttgaa
      901 accatcaatc aacaaggggg gattcacggt agagaagtgc agattgcaac ggcagggttt
      961 tgcgttaaag ataaagcaag tattcttcag gcataccatc atttatttga tcaagaagtt
     1021 gatgccattt caaccgctta tgcgtgctac ttgccggaag tacacgaatt aattgcaact
     1081 aaaggcattc cttatttgca tattgcaact catagtggct caaataaact tgcccaaaat
     1141 ttaccgaatc aacgaattga aaatatgttt caggtttgcg ccagtgatgt aacctatggc
     1201 ttaggtatat ctcactttct gcaatattac cgttaccatt atgccccttg gcttcagaat
     1261 aaaacggtga tggtggtaac ggtgagttgg caaaaagttg atatcggtat tgaaagttta
     1321 accctaagtt tgcgggagca aggctggaat gtggattatc tggaactcac ccaagagcaa
     1381 gataattatg ccaaattaat gacacaggtg cataatctca cgccatccat tattgtgttt
     1441 gcctcttatt ttgcagaaga tattgtacag ttttatcaaa cgttcattcg caacccaaca
     1501 aatgccatta tttacagtat ttatgcacct tcggcgtttt tgccacacga gaaactttgc
     1561 gagggcgttc tctggagtac caatagtggg ttaagcgaaa attatttagg cagacagttt
     1621 agccaacatt acgaacaatt tttcggcaaa tcgcccactt attcccaagc cagtattgct
     1681 tatgaccaag caaatattct agcaaatgcg tggaaacaaa gtgtttcacc tcggcatttt
     1741 aaagccgtct ctaatgcgat ccgcttacag ccacattatg gggtaaacgg cacttactat
     1801 tttaataccg atagccaaat tggattaact tacgcagaaa cccacgactt atctatcagc
     1861 ttgccacagt tggtttacca aatccaacaa gggcagagcc gtgtgattgc accggagttg
     1921 tttgccaatg cacaatttat cttaccgccg tggttctctg aaaaagccta aaatttcact
     1981 acatattttt gccttagatc aaattattct cactctttcg aggtaatagg tatttttact
     2041 tatttttata cctcttggga gttaatacaa tgcctctgtc tttaattttt agtgtattaa
     2101 gtggggtaat ttatggctaa gatgaaaaaa attgctgtat ttgtcggtat tatggcatta
     2161 ggtgctgcgg tattaggtgg cacacaatat gcaatgaaag ccaccagctc aacagaattt
     2221 tgtgtgagct gccattctat gactcaccca caggcagagt gggaaggcag tgtccatttt
     2281 tccaaccgta agggaattcg agccgagtgt tcggattgcc atctaccaca agacggcttg
     2341 cattatgtca aagctaaaat catcgcatta aaagatgttt ggcacaccgt tgtaaccaat
     2401 aaattacctg atcaagaagc ctatgaagcc catcgtctag aaatggcaca acgtgtttgg
     2461 gcagaaatga aagaaaacga ttctatgacc tgtaaaagct gtcatagttt tgatgcgatg
     2521 gtactttctg aacaaacaga agcggcacag aaaatgcaca aactagccca agaaactaat
     2581 caaacctgta ttgattgcca taaaggaatt gcccatttta tgcctgatgt gccggtagat
     2641 aatgccgcag caatgggcga attagctaaa cacggtgcgg aatttagcac aaatgataaa
     2701 accctttata cgctcgcaat gactccagtg cagctcgctc aaggtggaga aattcgcttg
     2761 ttaccttatg cagaattaca tcaatggaca gcagaaggcg agcaggttaa agcaacggtt
     2821 aatggctggc aacaagaagg tgcggaatct gtggtgtata tggatttagg caagcgtatt
     2881 atggttgctc ttctacctga tgacgctcaa agcaaagtga atgtcacaaa aacagtgttt
     2941 gataatgtca ccaactcaaa ttggaaagaa atcaattttg aaattactgc tcctaaaaat
     3001 gcagtcactg ccaatattac tgcactaaat cattttggcg ataacttaaa ccaaacacac
     3061 tgtagcggtt gccatgcacc gattggggca gaacattaca ccgcaaatca atggattggg
     3121 gtggtaaatt caatgaaaga cagaacatct atgtcggctg atgatgtgcg tgcggtgact
     3181 atctatctcc aacgtaatgc aaaagatgta gcaggcagtt cccattaatt gtaacttaga
     3241 ggataccgag cttgtgagcc taagtgtcta ctgatagcag agatatggta gcaagccgta
     3301 aagcacctat tacaagcggt cattttttcc taacattttg caaaaattac cgtcggttct
     3361 ttaccaatgg atacacgaga aatggtttat ccactcgact ttagaaaggt gtctattttt
     3421 aacttaactt caaacgaggt ttattatgaa aaaacaagac agtattgacg taagtcgtcg
     3481 cggttttcta aaaaattcat cattaagctt agctgccggt gcaggtttag ccagtggtac
     3541 taccggtgta gtgggggcat tagcttccac cagtgccaaa gctgccgaga tgaaaacagt
     3601 agtaactgct gcccactggg ggcctttagg cgtagtggta gaaaatggca aagtggtgaa
     3661 atctgattct gtttttgaga tttctgtgcc aaatgaattg caacacgtgg tagcagacca
     3721 agtacacggt gaaacacgag taaaataccc aatggtgcgt aaaggctact tagaaggtaa
     3781 taaagatact actatacgtg ggcgtgatga atgggtgcga gtttcgtggg ataaggcatt
     3841 tgaattagtt gcgaatgaaa tgaaacgtgt tcgtgaggct cacggggcga atgctatttt
     3901 tggtggttct tacggttggt atagttctgg ggcattacac gcttcccgta cactgttaca
     3961 acgctattta aatgttaccg gcggatttgt tggcgtaaaa ggcgactatt ctaccggtgc
     4021 agctcaagta attatgccac acgttttagg tacaatcgag gtgtacgaac agcaaaccag
     4081 ttgggaagtg attttagaaa gttcagatat tgtggtgctt tggtcagcta acccgttaaa
     4141 tacgctacgc attgcgtgga cttcaaccga tcaacaaggt attgaatact ttaaaaaact
     4201 caaagagagc gggaaacgca ttatctgtat tgacccggta aaaagcgaat cttgtgaatt
     4261 tttaggtgca gaatgggtac cggtaaatac cggcacggat gttgcgttaa tgctcggtat
     4321 ggctcatacc ttagtcgctg aaggcaaaca cgatcaagca ttccttaaaa aatacaccac
     4381 cggttttgag aagtttgaag aatatctgct cggtaaggca gacaatcaac cgaaagatgc
     4441 aaaatgggca agtcaaattt gtggtgtgcc agaagaaacc attaaaaaat tagccactga
     4501 tttccaatct aaacgcacaa tgttaatggc aggttggggg attcaacgcc aacgacacgg
     4561 tgaacaaggg cattggatgt tagtcaccct agctgcaatg ttaggtcaaa tcggcttacc
     4621 gggtggtggt ttcggtttaa gctaccatta ctcaaacggc ggtgtgccga gtgccacagg
     4681 gggcatttta ggctctatca cagcaaatcc ggcagtagaa gccggagcga aaacctggtt
     4741 agatgaaaca tcaaaatctt cattcccggt ggctcgtatt tccgatgcac tgctcaaccc
     4801 gggcaaaacc attgattaca atggcacaca aattacttat cctgatatca aaattgtcta
     4861 ttgggcaggg ggtaatccgt ttacccacca ccaagacacc aacactttgg tgaaagcgtg
     4921 gcaaaaaccg gatactatta tcgtcaatga atgccattgg acaccaacgg ctcgtatgtc
     4981 tgacatcgtg ctgccggcaa ccaccagcta tgagcgtaat gacttaacta tgtcgggcga
     5041 ttattcaatg atgaatattt tcccgatgaa acaggtggtc gaaccgcaat ttgaggcaaa
     5101 aaacgactac gatatttttg ccgaactagc caaacgtgca ggcaaagaag cggaatttac
     5161 cgaaggcaaa tctgaaatgg attggctaca aagtttctat caaactgcat ttgaggcagc
     5221 acgcaaaaat cgtgtgatta tgccgaaatt cgagaaattc tggcaagaga ataaaccact
     5281 ttcttttaaa gcatcagaca aagcgaaaaa atgggttcgt tatgaagaat ttcgtaatga
     5341 cccactccta aatccattag gcacaccgtc cggcaaaatt gagattttct ctgaggtgat
     5401 tgccaaaatg aattatgatg actgtaaagg tcacccaact tggatggaac acgaagaata
     5461 ctcgggtaaa accaccgcag aagaaccgtt ggcattggtg actccacact ctaaatggcg
     5521 tttacacagc cagttagctt actcatcatt acgcaaacaa tatgcggtta atgaccgtga
     5581 gccggtgttg atccatactg aagatgccgc cgctcgtggc attacaagcg gtgatattgt
     5641 gcgtattttt aacaaacgtg gtcaagtatt agccggtgca gtggtgacag atggcattat
     5701 caaaggtaca ttagccttgc acgaaggagc ttggtacgat ccgctcgatc tcggcaccag
     5761 cgagcaaccg ctatgtaaaa acggcaaccc taacgtgcta acccgtgatg aaggcacatc
     5821 aaaattagca cagggtaact caccaaatac cgctacggta caggttgaaa aattcaccgg
     5881 acaagcacca gaagtaacag tatttaaaga gcctaaatac acacaaggct aatttcatat
     5941 aaccaaaggc acagtataaa actgtgcctt ttctatgttg caagcggtta aatttgctta
     6001 attttttgta aaactttcta tttttttgac cgcttgttac aataatccac ttttactttt
     6061 caggtgcatt ttatgacaac ccttacttgg tacggcaaag aagaagccgt caaaaaagca
     6121 aaacaaaccc catattgcct attgcgtgag ttgccggact tctcgcataa tattgcccga
     6181 cagccgacag ccgacagccg acagccgaca gccgacagcc gacagccgac agccgacagc
     6241 cgacagccga cagccgacag ccgacagctc agcttctgct gaaaccttat ctaaagtcaa
     6301 gcaaaattta attattcagg gtgataattt atcagcctta aaatctcttt tgccctttta
     6361 tgcggggcaa gtcaaatgta tttttattga tcctccctat aacacaaaat cggcctttac
     6421 ccactacgat gataatttag agcattccgt ttggctttca atgatgtatc cacgccttga
     6481 aattctgcga gatttacttg ccgaagatgg ttcaatttgg atcactcttg atgataacga
     6541 aagtcactat ttgaaaatta tgcttgatga aatttttggg cggaagaatt tcatttctaa
     6601 cttaatttgg gaaaagaaaa ggaaaccatc ttttttaggc aaagttggta aagttacaga
     6661 taatttattt tgctatgcaa aaaacaaaaa tgaattaaat gacttaactt accttgagac
     6721 ctcaggtgat gaaacctatc cattatacaa tgctggaaat tcaagagaaa ttttagtttt
     6781 ccctcctcgt tctataaaat ttaaaaaaca tagtgatgga ttatataagc caaccatttt
     6841 ttctaaaaaa acgagttcaa ttacgttgat ttcggaatta attattgaag atcaatggaa
     6901 taaaaataca gtagaaattg aaggtgaatg gcggtatagc caaaaaagta ttgatgagca
     6961 attaaaaaat ggtgattact atattataaa aagtttagac tttcgaccaa ggagagtatt
//
LOCUS       DANLUT010000127         7018 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLUT010000127 DANLUT010000000
VERSION     DANLUT010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(168..2510)
                     /locus_tag="PXB38_001974"
     CDS             complement(168..2510)
                     /locus_tag="PXB38_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5354256.1"
                     /translation="MPKFSPLVWAESSDDVAVLNEVSVVGSTPSVAKGSEVTLMKTSD
                     KIIEGKEFKKRSATLGNALAAELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDVID
                     MSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGYEV
                     ELNSRFDTAAKEKVGALGATFGIGNHIAVRAEGLTRHSDNYRVPGINLGERLNYVPDT
                     YNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYAYT
                     YLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRIDV
                     KAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKNRG
                     KNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVEQY
                     MWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAYSG
                     TLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVELG
                     LGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYRFN
                     DQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPRTP
                     PMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKELD
                     YKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2702..3991
                     /locus_tag="PXB38_001975"
     CDS             2702..3991
                     /locus_tag="PXB38_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354257.1"
                     /translation="MHPKFKLTLAALAVSVVLTGCKSSQGPSVVAKNSDDRVIKLNAE
                     TEDKKEETPAEQPRPAPQKPQVTPPAPLLPTTPKLEEKPNKEMVETTPKPEEKPNEKM
                     VEEGNNGEDEIKVITSITPVNTDSKGSTWRVVPLSQTGGVVNLSTARGDHTDYRLTDE
                     NSPLGSSQEFGKTEYNYPIGFELGKNEQNSPFIKTLNKRGDKYLGQHSGTYKDDKLVG
                     NSQKINYLYVNQPYSSYGALFTDANNSNLFHVQLKTGRDSNGISAESEGSNANSAEYS
                     VYTLQGKTGKWNNEVLGDAEYKGNLIARIEKQMDGKTVIEAPKVDGEVTLSLHLDNNW
                     ANNTLEGKVTSKTLGEIGLDKTKLAPAVRLPTNEISFYGTASATDHEGLKGEYSATFA
                     GKTLNDAVGSIELENEDANNGDVSKYNAVFGVMKVEK"
     gene            4051..5463
                     /locus_tag="PXB38_001976"
     CDS             4051..5463
                     /locus_tag="PXB38_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5354258.1"
                     /translation="MKKIALLAFFPTLLFARDPNTTPAHLEHTAQPTTAPQAVAIEQS
                     PPIFNEAELRANQALTEELLTQAIYSRQLANMEKLTAIYQDFTQIDPILLRYAQGKIS
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(5713..5991)
                     /locus_tag="PXB38_001977"
     CDS             complement(5713..5991)
                     /locus_tag="PXB38_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL5354259.1"
                     /translation="MTEAKLELGKVETRLRNEGKTKEEIAQHPEYLQLKRDLNDKQQT
                     FDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLNEQIKK"
     gene            complement(6151..6747)
                     /locus_tag="PXB38_001978"
     CDS             complement(6151..6747)
                     /locus_tag="PXB38_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL5354260.1"
                     /translation="MADSYRNQTKEKNHSASVGVFVSFNGDSYGIGLEASGSVGKGKE
                     NSESETWQNNQLQAGKLVTNSANGKLLLDATTVKANRWEGEVQDFEAKSRQDIIKYSS
                     EQVQAGGSASLALGTSSANVNAAYNSAKLNTAQVEKQTSIDIGKGGMDVKVKKNAHFD
                     GAVMTSQAEKENNRFQAGTLTTGDWRKYRYRPNPRPKC"
BASE COUNT         1997 a         1678 c         1394 g         1949 t
ORIGIN      
        1 aacaacaaac aggaaatttt ggtaagctcc gaaaataaca agaaaggaaa aacagcacta
       61 ttttatccaa attaccaata cctgagtttt aaacaagcgg ttatttttag ccgttttttt
      121 gcaaaatttg aagaaaaaat aaccgcttgt cttgttatgt cgagaactta aaatttcatc
      181 tccattccca acataaaatt tcgtcccatt tgtggtacaa attggtgata cgaagtgtgg
      241 atatacaccg gctgattcag taagtttgtg ccgtttagac tgattttgta atccagctct
      301 ttccacttat tgctatacga caacccgaca ttcaacatcg tattaccttc ggtaatatat
      361 tccaactggc tcgtacggcg ttgggtaaag gtgcggatca gctctaaatc ccccgaccaa
      421 tttggggtaa attccgcatt aaagcgaaaa cctaaacgca ttggcggtgt acgaggggtg
      481 ttttggtcag cccgatatag aagataatct ttcccttttt ccacattttc cggcagataa
      541 tctttgaaca cactataatc gctatttatc ttcaatggtg gtaaatttgt tagccagcct
      601 cgtaccatat cgccgaaaat cgtggcttgg tattggtcgt taaagcggta gcttgcctct
      661 gcttctaccc cgtaaaaacg ggcttttgcc tgattataac ggcgcataaa tagctgattt
      721 tcacggaaaa gattttcatt gtagatgtag tttttaaagt gattgtaata aacactcact
      781 ttatagccaa tacgttcagc ttgatagccc aagcccaact ccacattatt tgactgctct
      841 tttttcaagt ctttattgcc gtattcaaac gaattagtag caatatgctg cccgtgataa
      901 tacagctcca ttggcgttgg caagcgttca ttgtgcgagg cagtaaacga aagctgatag
      961 tcagggtgga agaaccagtt aagcgtgccg gaataggcat aagccgtttc atcatagggt
     1021 gaaagatctg gctcaacctg tttgccgcca ctgatacggt agtgttcttg taaccgtttg
     1081 atttcattgc gatcatactc aatctcaatc ttctgctttt ccattcgtcc ggcaagctca
     1141 acagcaacgc tatcccacat atactgctca accccaaaca ggctgaactg tttattggta
     1201 ttttcaacca gcgggaattt cacttcgcga tctttcggcg cattcatact gcttttttgc
     1261 gtttgatact gaacacccca tacaccggtt aagccaccta gcggtgcgtg atagacctcc
     1321 aagcgggtat ttttgccccg atttttgaaa atattcaccg gcttgccgta atcctgatct
     1381 tttttcagct gtttatggta acgggtggca agcacgcctg catctttttc atcgtggtaa
     1441 taatcggcat cagcatagct tgccttaatt ttatctacgc ccttaaacgg ctggcgtagc
     1501 tcggctttca catcaatccg ttttgattct aaatccaccc acgggccttt gtgagtgtga
     1561 tcgtgggcgt gtccgaacgg gttatcgtgg ctgtgtgtgc cgtcctcggc gtggttggtt
     1621 ccacagtgga agtgcggatt gctcccaata ttttcctcac caatcaaatg cggatagaga
     1681 taggtataag cgtatttatc ccgcttatta ccgtagatat gaccggtaca gaaatcaaat
     1741 ttatggttat gccccggcaa gccataatta tcccgccgtt tgctgtatga ggcaccaata
     1801 tagcctcgtt caccgacaaa ggataagccc aacgtgccga ctttggattt attgtaagtg
     1861 tccggcacat agtttaagcg ctcgcctaaa ttgatccccg gcacacggta gttatcacta
     1921 tggcgggtca gcccttcggc tcgcaccgca atgtggttac cgatgccaaa ggttgcccct
     1981 aatgcgccga ctttctcttt ggcggcggta tcaaaacggc tattgagttc aacctcatat
     2041 cccttttcag gaatagcggt cggaatacgt ttatccacca catttacaat tcctaccggc
     2101 gaactgctgg cataaagcaa ggtgctggaa ccacgcaaga tttcgacctg atcggcaagc
     2161 agtgaatcag caacaacggc gtgatcagga gataggttcg acatatcaat cacgtctgaa
     2221 ccgttttgca aaatgcgaat tctcgcccct tcctgcccac gaataatcgg cttactcgct
     2281 ccgccaccaa acgggttact atgcacgcct aactcagcgg ctaacgcatt gcccaatgtt
     2341 gccgaacgtt tcttaaactc tttaccttca atgattttat cactggtttt cattagggtg
     2401 acttcgctac ctttcgccac actcggtgta ctgccaacca cagaaacctc attcaaaact
     2461 gcaacatcat cgctgctttc agcccaaaca agcgggctaa atttgggcag aaattagcaa
     2521 agccagtaat tttttattaa acacaatcat ctccttaaaa attttaaggt taataaatta
     2581 ctgtaaaaaa gagtttttta caatagacca taaaaaattt atgtaatttt taacttacct
     2641 acttgtcaaa aggtaaattt atccattaaa attttatggc ttttataagg agaaaatatc
     2701 tatgcatcct aaattcaaac taacccttgc cgcattagcg gtttctgttg ttttaaccgg
     2761 ctgcaaatcc agccaaggtc cttctgtggt agcgaaaaat tcagatgacc gagtaattaa
     2821 actcaacgcc gaaacggaag ataaaaaaga agaaacccca gcagagcaac ctcgccctgc
     2881 cccccaaaaa ccacaagtca caccaccagc tccgttattg cctacaacac ctaagctaga
     2941 ggaaaaacca aacaaagaaa tggtagaaac aacacctaag ccagaagaaa aaccaaacga
     3001 aaaaatggta gaagaaggga ataacggtga agatgaaatt aaggtcatta cttctatcac
     3061 gccggtgaat accgacagca aaggctctac gtggcgtgtt gtaccgctca gccaaacagg
     3121 tggcgtggtg aatttaagca ccgcaagagg cgatcacacc gattatcgct taacggacga
     3181 aaactcccct ctcggctcaa gccaagagtt tgggaagaca gaatataact acccaattgg
     3241 ttttgagctg ggaaaaaatg agcaaaacag cccattcatt aaaacactca acaaacgggg
     3301 tgataagtat ctcggtcagc attccggcac ttataaagac gataaattgg tcggcaacag
     3361 ccaaaaaatc aattatctct acgtcaatca gccatattcc agttatggtg cactctttac
     3421 cgatgcaaac aacagcaatc tgttccacgt tcagctaaaa accgggcgtg acagcaatgg
     3481 tatttcagcg gagagtgaag gcagtaatgc gaatagtgcc gaatatagcg tctatactct
     3541 gcaaggcaaa accggtaaat ggaataatga agtgctgggc gatgcagagt ataaaggtaa
     3601 cctaattgct cgtattgaaa aacagatgga cggaaaaacg gtgatcgaag caccaaaagt
     3661 ggatggtgag gttacactca gcctacactt agataacaat tgggcaaata atacgttaga
     3721 aggtaaggta accagtaaaa cactgggtga aattgggctg gataaaacca aactcgcacc
     3781 tgccgtaaga ttaccgacta atgaaatcag cttctacggc accgcaagtg ctactgacca
     3841 cgagggttta aaaggcgaat attcagcaac ctttgccggt aaaacactca atgatgccgt
     3901 aggttcaatt gaattggaaa atgaagatgc caataacggt gacgtcagca aatataacgc
     3961 cgtcttcggt gtaatgaaag ttgaaaaata acctcatatt acgataatca tagagggctg
     4021 gcaacagccc tttgttttta aggacgaaca atgaaaaaaa ttgctttgct ggcttttttc
     4081 ccgacactac tctttgcccg agatccgaat acgacaccag ctcatcttga gcatacagca
     4141 cagccaacaa ccgcaccaca agctgttgcg attgaacaat ccccccccat ttttaatgaa
     4201 gcggaattac gggcaaatca ggcattaacc gaggagctgc tgactcaagc catttatagc
     4261 cgtcaattag ccaatatgga aaaattgacc gctatttatc aagattttac gcagattgac
     4321 cctattttac tgcgttatgc acaaggtaaa atttccctac tgaaaggcga ttacgcacag
     4381 gcaattcagc acttccaaac cattcttgcc aaacaaccca aactaaacac tgtaagaatt
     4441 gagctggcga ttgctctatt gtacgatcag caacttaatc aagcccaagc acaatttgaa
     4501 aaagccaaaa gtgccgaaca tctaccgcct aaagttcacg cattaattga gcaatatcag
     4561 caacatctgg caaaaaaaca ggaatggaaa tttagttttt cagccaatta tgtgcgagac
     4621 ggcaacatta accgaacctc gaaacagccg aacattgagc aaaccggcta tgtaaaacaa
     4681 cctaatttgt tgccccaaac cgcacatggt gttcactatg cgtttggatt acagagagat
     4741 ttcaacctgt tcgactcaca ctatgtgagt tttgacaacc aaacccaagg tgaactttat
     4801 tgggataacc acgattatga tgaaattacc aatcgcacct tgtttggata cgcttacaaa
     4861 aaatccgacc aaaccacccg cttgttaccg ttttatgaaa aacgctggaa acatcaccgt
     4921 tcggaacgct ggacaaacgg aattcgactt gaacatgcac aatggttttc accgcattgg
     4981 caactcgcca ccgcattgga atacggcaaa aaacgttatt ttgatttgcc gatttataac
     5041 ggcagctaca aacttgcctc tgccacattg ctttggttac gcaatccaca acaatttttc
     5101 tttgtcggca ctgatttcaa tcaagacaaa actcagttaa aacaatatag ctctgatact
     5161 aaaggcatac gctttggctg gcaacgagaa tggcaagccc tcgagctttc cagtcgcctc
     5221 acgcttggct atactgacag acgttacaaa gacaccgcta tattgggagg aaaacttaat
     5281 cttggcagaa tccgccatga ccgtgtgcaa agtgctaacc tcacgctttg gaaacgagat
     5341 tggcactggc tcggcctgat gccgaagctg caatttagtt acgccaaaca ccgtagcaac
     5401 ctgccgagcc tctatgccta caccgataaa aacatcaatt taattattga aagtcggttc
     5461 tagctccata aaaacaacaa gcggttaaaa ttcctagaaa ttttgcaaat tgcaaaaaat
     5521 gtagaaaatt taaccgcttg tatctatact gcagcttctt ttccttcagt ataaattaat
     5581 atacaccgtt gcaacaataa tggctgctcc ctgtcatcac cttgaactga aaattgctca
     5641 aggtggatat gactatcgca gccgcttcca ccgcacccag taatgtatgg gcaagcaggt
     5701 tggcttgggt atctactttt taatttgttc gttgagatat ggcgaagcta agcctactgc
     5761 tgcttgtcct gaatctttcg ccgctaaacc ttgtaaggct gccgtcaccg catccaccgc
     5821 acgcttggtt ttgctgcccg tgccgtaggc gttatcaaaa gtctgctgtt tatcgtttaa
     5881 atcccgtttt aattggagat attcaggatg ttgagcgatt tcttcttttg tttttccctc
     5941 atttctcaaa cgggtttcca ctttgcccaa ttccagcttc gcttccgtca ctttttcacg
     6001 ctcactatgc gtgtaaatct gataagcctt ctgcaaatct cgcctatgcc cttcaccagc
     6061 tcctgtgttt ctttcacctc actaatatcg tgtttcgtca ctttttgatt ggcgttttgc
     6121 gtatctcggt taagctgatt gagcgtgctt tcagcatttg ggtcttggat tagggcgata
     6181 gcgatatttt ctccaatcgc cggtggtcag cgtgccggct tggaagcggt tgttttcttt
     6241 ctccgcttgg ctggtcatta ccgcaccgtc aaaatgggca ttctttttca ctttaacgtc
     6301 cattcctccc ttgccaatgt cgattgaggt ttgtttttct acctgtgccg tgttcaactt
     6361 ggctgagttg taagccgcat ttacattggc actgcttgta cccaaggcaa gtgaagcact
     6421 gccacccgct tgcacctgtt cgctgctgta tttgatgatg tcttgtcggc ttttcgcctc
     6481 aaaatcttgt acctcgcctt cccagcgatt ggctttgaca gtcgtggcat ccagcaagag
     6541 tttaccgttt gcagaattgg taactaattt acccgcttgt aattggttgt tctgccacgt
     6601 ctcgctttcg ctgttctcct tacctttgcc aacactgccc gacgcttcca gccctatgcc
     6661 gtagctgtcg ccattgaagc tcacaaacac acccacgctc gcactgtggt ttttctcttt
     6721 ggtttggttg cggtaactat ctgccactca ccactttcag caagtaagcg atagcctttt
     6781 tgcaaatgtt gagcatcaac ccactgagct tttgctatct ctccattgta taatgcccct
     6841 ccgaagaaat cggcactatg cccgataata cttgtgtaaa gaacgggggg atttgtttca
     6901 aatattaaaa tcaaacctaa gcgtatttct ctaacaattc aataacagct ttaaattcag
     6961 gtttatttcc attatatttt ctcatccctt caatcaattc aaactgacca ttaaaata
//
LOCUS       DANLUT010000128         6966 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLUT010000128 DANLUT010000000
VERSION     DANLUT010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            61..498
                     /locus_tag="PXB38_001979"
     CDS             61..498
                     /locus_tag="PXB38_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL5354261.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            complement(618..693)
                     /locus_tag="PXB38_001980"
     tRNA            complement(618..693)
                     /locus_tag="PXB38_001980"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(658..660),aa:Asn,seq:gtt)
     gene            complement(809..1558)
                     /gene="moeB"
                     /locus_tag="PXB38_001981"
     CDS             complement(809..1558)
                     /gene="moeB"
                     /locus_tag="PXB38_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL5354262.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1657..2886)
                     /gene="moeA"
                     /locus_tag="PXB38_001982"
     CDS             complement(1657..2886)
                     /gene="moeA"
                     /locus_tag="PXB38_001982"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL5354263.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPQ
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2908..3525)
                     /locus_tag="PXB38_001983"
     CDS             complement(2908..3525)
                     /locus_tag="PXB38_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL5354264.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHFIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3593..4804)
                     /locus_tag="PXB38_001984"
     CDS             complement(3593..4804)
                     /locus_tag="PXB38_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL5354265.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQKSRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            5001..6932
                     /locus_tag="PXB38_001985"
     CDS             5001..6932
                     /locus_tag="PXB38_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354266.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
BASE COUNT         2142 a         1544 c         1352 g         1928 t
ORIGIN      
        1 cctattgtag attttaatca gttagctaaa ataaaagaaa aatttgaaag agataatcct
       61 atgttaagct tatttgatgc aggacagcgt tacctcaaca ctctgccgaa tcagaaaaaa
      121 ttagccaatt ttatgccaga ttaccacatt attcgcttgg taaaattttc ctctaaagta
      181 atgcctgctt ttgcttgctt tgcattagtt tggcaatatt gctttaccga tccgacccaa
      241 tctattttag ccaattcggt acttactgct gttttcgcca tttctattcc gtttcaaggg
      301 ttatattggc ttggaaaacg ggcaagatca ccgttatctt tatcattatt ggaatggtat
      361 gagtcgctta gacaaaaatt aatttcggca caagtcaaat tagaagaaac acaagcggta
      421 ccttctttcc aagattttgc aaatttactc aagctagcag aagagacttg gggagatgaa
      481 tattttgatg agttataaaa taaaaaaagc cccacttaaa ataagtgggg taaaactttt
      541 gttctaattc tggaggtttg aattactgtt ttataaaagg agacaaataa aacaagaaca
      601 aaagaaaaat aaaatcttgg ctcctcctgc gggactcgaa cctgcgacat atggattaac
      661 agtccaccgt tctaccgact gaactaagga ggaattaacg gtgtaaataa taggctaaaa
      721 cgttttagcc gtcaaataaa aaaaataaac tgtcgttcat tttttacatt tcttgacatt
      781 ttttcgccaa taagtatgag aaaaatactt aataagaggt acaaaccgga cagttatttt
      841 gcttaggtaa tgccatttct ctgacagaaa aatgcaagcc gtcaatcatt aacaattttc
      901 cggaaagagt tctgccgata ttaagtagca ctttaattgc ttccaacgct tgaatactgc
      961 ctatgatgcc aacaatcgga gcaatgaccc ccgcttcaac acaacttaaa gtcgcatcac
     1021 caaacaacct gcttaaacat tcatagcacg gttcttgttc ttgataacaa aatacactca
     1081 cctgcccttc aaatcgaatt gccgaaccgg aaacaagcgg tcgtttttgc ttaaaacatt
     1141 gcaaatttaa ctgattacgc acagtaacgt tatcggtaca atccagcact aaatctacat
     1201 ttgcaatcag cttggctaac tgctcatcgg aacatcgctg attgatagtt tcaatctgaa
     1261 tgttcggatt aatcgccgct aatcgagctt tggcagattc cacctttggc tgcccgatag
     1321 tcgcatcggt atgtaaaatt tggcgttgca gattagaaag tgagaccaga tcaaaatcca
     1381 ccaaagtcaa atgcccaacg ccggcagaag ctaagtattg cgatgccgca cagcccaaac
     1441 cacctaaacc gacaatcaac actcggctgg cttttaactt ttcctgcccg tcaaaatcca
     1501 cgctttttag gataatctgg cgattataac gtagcatttc gtgatcggta agttccattt
     1561 ttacacctaa agagtaaacg atggcgcaag cgtccacgct tgtgcctata tttttattgc
     1621 tagcacaagc gtggacgctt gcgctatctt aattcattaa tacatcagcg aattaaacgg
     1681 ctgaatagtg actttttccc cagcatcaac attgcctcgt tctgcttcta gcacaataaa
     1741 acagttactt tcattaaaag cgctgaaaat atgtgagcct tgcgtgccaa ctgcacgaac
     1801 ttctaactca cctttttcat tggcatagta atagccccgt tggaaatctt ggcgaccgac
     1861 cgcttttttc aattttccgg cactgcaagc ggttagattt tgggttaatt ttgcaatttt
     1921 atctgtcgat aaacccgaaa gtttggctaa cgccggttgc gctaattggt agaaagtcac
     1981 taatgcagag acagggttgc ccggcagccc aaaaaaccaa gcctgttcta atttaccgaa
     2041 tgcaaaaggc ttgcccggct tcatcgcaat tttccagaaa ccgatttcgc ctaatttttc
     2101 cagtacatct ttggtaaaat ctgcctctcc cacagatacg ccgccactgg taatcaacac
     2161 atcggcttgc tgttgggctt gcctgaaagt ttgctcaaac agaattgggt catcaggcaa
     2221 aatcccaaaa tctaaaatct cgcagttgag tttttccagc attaaacgca ccgcaaaacg
     2281 gttggtgtcg taaatttttc cctcactcaa aggctcgcca actgaggtta attcatcgcc
     2341 ggttgaaaga attgccactt ttaattttac aaaaacaggc acagaagcaa taccgagtga
     2401 agctagcaac ggtaaactgg ctacattcaa taatgagcct tttttcaaga ccaatgcccc
     2461 ctgtttaaca tcttccccaa tgcggcgaat gttactgcct aattttggaa tatggttaaa
     2521 ggttacagag ccatcggaat ttaacgtagt ttcctcttgc attacaacgg catcaacgcc
     2581 ctgtggcact aatgctcccg tcataatccg cacgcattcg cctgccttta tttcgccgtt
     2641 aaacgggtta ccggcaaagg ctttaccagc cacattcaag gttaaatttt gtgctaaatc
     2701 tgaaatacga accgcgtagc cgtccatcgc cgaattatca aaattcggta cattaatcgg
     2761 ggaaaaaata tcctctgcca acactcggtt agcacactca tttaacggaa gttgttccac
     2821 caatttaggt gtcgataaac gagcaagcat attatctaac gcatcactca aagccaaaag
     2881 tgccataatt tcctacctat tcaacgttta gctaatttgt acaaagaaat cccgtacgcc
     2941 aatcaacaga ttattcaccg caatcgcagc cagaattaac cccatcactc ggctgataat
     3001 cgcagcccct gcattaccaa taaagtgctg aatacggttt gccgctaata gcaacaaata
     3061 ggtaataaag agtaccaaaa gcataatgcc ggcggtgata atttgatcgc cgatatgaaa
     3121 acggtgattg tcggttaata atacgattgc catcatcgcc ccgggagaag caatcgacgg
     3181 tacagctagc ggataaaccg ccaattcatt cagattactg ctgatccgca tttcttgctc
     3241 gggcttgctt tcgccaaaaa tcatcgttaa agcaaataac aacagcacta agccgcctgc
     3301 cgcttggaat gcaggtaacg gaatctgcat tgattctaac agcacttgcc caccgataag
     3361 gaagaaaatc aaaataccgg cggcaatcaa gaccgcattt agtgcaattt tacgccgtgc
     3421 ttcaatcggc aaaccaatgg tttttgccaa ataaacagga acagaaccaa tcgggtcgat
     3481 caccgcccat aaaaccacaa attgtaccgc taatgaatca aacatattct ctcctgttat
     3541 cttgataatt tgcaaaattt tagcataaaa caaccgcttg cacggctttt tcttacagat
     3601 agctcaccgg taacgctacc aaattttcac ttaaataaag tttggtcgga tattggttaa
     3661 taatcgctcc ctgccctaat ttccattcac tagaaactga gtttagcaag tcaaaacttt
     3721 ttgccatttt tttggttggg cttgccgtga ccttaatttc tatcggataa agcgtgcgat
     3781 catattcaat aattaagtcg atctctttct ggttagtatc acggtaaaaa taaatcggcg
     3841 gctcaattcc ttgattatga aaggatttta taatttggct taccacaaag gtttcaaaga
     3901 actgccagct ttttgcccct tgagcaatag tttcgggggt aagccatttg gttaaatacg
     3961 ccattaaccc ggtgtctaga aaatacactt ttggggtctt aattgcccgt ttcaaatgat
     4021 tgttgtggta tggctggagc aaatagataa tgccggaagt ctgcaaaatg gcgacccaac
     4081 gtttaatcgt ttcattcgat actccaactt cttgagcaat attactgtaa ttgagtagct
     4141 caccactacg agaggcaata gagaccataa aacgggtaaa atccgttgtg ctggcaatat
     4201 tggttaattg gcgaacatct cgctcaatgt aggtcgctac ataagagcga taataaatct
     4261 cccaatccac ctcttgtgca tataaacgag gcatatcgcc tttatggata agctgccaga
     4321 tgttctccgg tgattttaat tcttgctccc gagctaacaa atagtcggtt gtcggtaaaa
     4381 aaggttgatc gaacttcacc cctaaaattt cacgcaacga aagcccttgt aattttaaaa
     4441 tagcaatacg accggcaagt gtttcactca cattctgcat taattcaaag gcttgcgacc
     4501 ccgaaagtaa aaacaaaccg ttttgctgtt ttttatcaat ttctaacttt aataacgcaa
     4561 aaatttcagg cacatactgt acttcgtcta aaataagctt gccttgatgg tttaaaaaaa
     4621 acaggcgaga tttttgttta gccagctcca gcaacattgg gtcatcaaaa gtaatatatt
     4681 gatagccctc accaatatgt tgtaacaatg tcgatttacc aacctgtctt gcccctgtca
     4741 ctaaaacggc aggaaattgc gccacgagtc gttttaacag cgattgcatt tgccgagaaa
     4801 tcatttttcc tccaaaatag cctaaatcaa gtttaacctc atatataatg ttgaattaaa
     4861 cttaatttaa attatttttt aagtttaatt caacacagaa tattgaatta aactgaattt
     4921 cttattttag ttcacaaagc aatggctttg cttttttatg ctaaaatacg caaaattttt
     4981 aacaaaatag accgcttgca atgatctttt ttacagactt aattttaaaa cgagggcatt
     5041 ccgttctcat tgataacagc tccgttacca ttcacaccgg gcagaaagtc ggtttggtgg
     5101 gaaaaaacgg ctgtggcaaa tcctctcttt ttgccttact gaaaaatgaa ttacaacctg
     5161 aaggtggcga tgtatcgttg ccgaaaaact gggcgatctc gtgggtaaat caagaaacgc
     5221 ctgcgttagc tatttcagcg ttagactatg tgattcaagg agatcgggaa tatacccatc
     5281 ttatggctga gctagatatc gcaaatgaaa agaatgacgg caaccgcatt gcgattatcc
     5341 atactcaact tgataccatt gatgcttgga caattcaatc ccgtgccgct accctgctta
     5401 acggcttggg gtttagcacc gaacaactgc aactgccggt gaaatccttc tccggtggct
     5461 ggcgtatgcg gttaaatttg gcacaagctc tgatttgtcg ttccgatctg ttattgcttg
     5521 acgagccaac caaccactta gacttagatg cggttatttg gttggagcgt tggctgagta
     5581 actatcgtgg cactttattg ttaatttcgc acgaccgtga ttttctcgat ccgattatcg
     5641 atcgggtgat tcatattgaa catcaaaagc tcaatgaata caccggcaat tacacctcgt
     5701 ttgagattca acgtgcgacc aaaatcgccc agcagaatgc cgcttatcag caacagcaac
     5761 gtaaagttgc tcatttgcag agttttatcg atcgctttaa agccaaagcg actaaagcga
     5821 aacaggcaca aagccgaatt aaagcgttgg aaaaaatgga gcttattgcc ccagcctatg
     5881 ctgattcgcc gtttgaattt gaatttcgcc caccgcttgc actgcctagc ccgttattaa
     5941 tgatggaaaa agtcagtgcc ggctatgcgg aaaaaacggt gttggaatcg gtcaaactga
     6001 atttggttcc cggctctcgt attggtttac tcgggagaaa cggtgcaggg aaatccacgc
     6061 tgattaaatt attggcgggc gaacttccgc cccaaaacgg ctcaattcaa ctggcaaaag
     6121 gcgtgcaact cggctatttc gcccaacatc aggtggatac actacgtttt gatgaaagcc
     6181 cactttggca tttacaaaaa ctcgcaccgg aaaaaaccga gcaggaatta cgcaattatt
     6241 taggcggttt cgattttaaa ggcgataaag tggtacaagc tgtgaaatca ttctccggcg
     6301 gagaaaaggc ccgtttagtg cttgccttaa ttgtatggca acgcccgaat ttactgctat
     6361 tagatgagcc aaccaaccat ttagatttag aaatgcgaca agccctggtt gatgcactga
     6421 cctattacga aggctcgcta gtggtggttt cgcacgaccg ccatttattg cgtagcaccg
     6481 tgaatgaatt ttatttagtg cacgaccgca aagtggaaaa atttaaaggt gatttagacg
     6541 attaccaaaa atggctcaat gagcaaaacg ccttagccaa cgagccgaaa tccgtacttg
     6601 caaaagattc ggcaaattcg accgcttgct ctagcaccaa tgaaaatagt gcagctcaac
     6661 gcaaagagca aaaacgctta gaggcagagc gccgccaaca aaccgcccca ttgcggaaaa
     6721 aaattactca actggaaaaa gagttagaaa aagcaaccga aaaattaaat aaactcgaag
     6781 caatgcttac cgaaagcgac atttatgaag ccgaaaataa agcaaaacta actgaaacac
     6841 ttgcgaaaca gttagaggca aaaaggctgg ttgaagaaat tgaaatgcaa tggttggagg
     6901 ctcaggagga gtttgagacc atgttacgct agggttctac aagatagcgc aagcgtccac
     6961 gcttgt
//
LOCUS       DANLUT010000129         6830 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLUT010000129 DANLUT010000000
VERSION     DANLUT010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6830
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            95..526
                     /locus_tag="PXB38_001986"
     CDS             95..526
                     /locus_tag="PXB38_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5354267.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            513..980
                     /locus_tag="PXB38_001987"
     CDS             513..980
                     /locus_tag="PXB38_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5354268.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQAGREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            983..1750
                     /locus_tag="PXB38_001988"
     CDS             983..1750
                     /locus_tag="PXB38_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5354269.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            1747..2553
                     /locus_tag="PXB38_001989"
     CDS             1747..2553
                     /locus_tag="PXB38_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL5354270.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            2553..3590
                     /locus_tag="PXB38_001990"
     CDS             2553..3590
                     /locus_tag="PXB38_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL5354271.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHDNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            3623..4690
                     /locus_tag="PXB38_001991"
     CDS             3623..4690
                     /locus_tag="PXB38_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine-type phosphatase"
                     /protein_id="HDL5354272.1"
                     /translation="MEKFHMRYFAKHWYKTTACLTTIFTAFPLFAQPIENIPTSHYEL
                     EKIIIFSRHGLRSPLTEKGSDLEKSTPYKWANWSVPTGHLTHKGTLLETYFGQYLGQW
                     LTHNGLLDKASCESGKQIEVYANSLQRTIGTAQALVAGGFSGCNVQVKHHQQIGKMDP
                     VFNPIIRSDDQTFVQTALSKIDLNKTHQYLAPSYHLLSEIIDYAHSEKCLQEKQCEFF
                     NDVGKLRIKKDKEPGVSGTMRLSENIVDALLLQYYEGLPLKEIANNQLDSDQKWQTLN
                     KIKNDYQFMLRGDPFIAKHISLPLLKYIQQDLNSENKITLLVGHDSNIIALLSALNVK
                     PYKLAHQYEQTSIGGKVFIEI"
     gene            5208..>6830
                     /locus_tag="PXB38_001992"
     CDS             5208..>6830
                     /locus_tag="PXB38_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL5354273.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEF"
BASE COUNT         2115 a         1238 c         1443 g         2034 t
ORIGIN      
        1 ttcttatgtg tacgatatat cgtgcaataa cttcccttgt ttatctgtat aacattttat
       61 ttaatagaat gacttataaa tcaaggagtg acttatgtct aatcaaattg cgttattgtt
      121 gatgagccac ggcagttttg cgagggcggc gttggcgagt gccgagctga ttgtcgggca
      181 gcaggaaaat gtggcagcta tcggcgtagt agcagtggat aatgtagcgg acattaaacg
      241 gcagatggag caaaccattg ctgagttaaa caccgacaaa ggcttgatta ttctcaccga
      301 tattgttggt ggtacgccga tgaatcttgc ctcttctcaa ttaacccacc ctaatgtttt
      361 tgcctgttcg ggtttgaatt tacctttatt gctagaagtg ctgatgagcc gtgacggcaa
      421 tttgcaagaa attcgggaaa atctaccgct tgcataccaa aacggattta gcctacgcac
      481 acaacaagat tttgtttcac aggaggacga tgatgatctg ctttagccgt attgatgacc
      541 gtttaattca cggtcaagta gtcaccactt gggttaattt acaccgtatt gaacaaatta
      601 ttgtgttaaa tgatgcggtg gcagcggatc caacccaaaa acagatttta acgatggctg
      661 caccgcaggg aattaaagtg gtcgcgtttg gcattgaaaa atttggtgaa gtgttgcaga
      721 agacacaaat tacccgccgt actatgttgt tgtttaccaa tagcattgat gtgttacgca
      781 ctgtagaact aggtgtatcg attgacaaat tgaatgtcgg cggaatgcgt tatcaagctg
      841 ggcgtgagca gttaagtaaa gcggtttcag ttacgccaga agagcgtcaa gcatttaaaa
      901 ccttattgga aaagggtgtt gaagtaacgg tacagatggt accgaatgat gaaaaactta
      961 acttacagga gattatctag ctatgctgac tgcactactt gttgcctgct gggcaggtat
     1021 ttgtgcctta gatgatattg gcacacagat gatccgccgt ccgttgttaa tcgcaccggt
     1081 ggtcggattg attatggggg atttggaaac ggcgttgatt attggtgcta cgcttgaagt
     1141 gatgtggatg gggatcggca atgttggtgc atattctgca ccggatatga tttccggaac
     1201 cgctattggc accgcacttg gtattgctgc tggtgaagct tctactgcgg ttgcactcgc
     1261 agtaccgacc tcactcttgg cacagcagtt actcattctt taccgctccg gcgtatgtgc
     1321 attgaaccca attgctgaac gctgggcggc aagcggtgat tttgacaaga ttttccgcat
     1381 tcactatatc ccaatgttaa ttgccttttc tattcgtgct attccaacgt tcttagccgt
     1441 ctattacggg gcggacatta ttgcccaagc ggtctctgct ctgccggcaa aagtgattac
     1501 cggattaaat gttgcaggca aaattattcc tgccatcggt atcggtttgc tgatgttaat
     1561 gatgattaag aaagccgaac tttggacgtt cttaattgct ggctttacgt tggcggttta
     1621 tctcaaatta tcagtattgc cgattacctt aattgcacta ccgcttgcgt tgatttacga
     1681 cttagcagta agcaaaaaag ctgaagctgc accaaccaaa accgcagatg aagaggatta
     1741 tgacctatga gcaataaaat taccaaacaa gatttaaaca aagtgttttg gcggatgcag
     1801 gtgctgaacg tcacaaacaa cttccaatcg atgcaggcga ttggattttt aagtagcttt
     1861 attccggtat taaaacgact ttataaagat cgtccacagg aagaacgagc ggaagcaatg
     1921 aaacgccact taaaattttt taacagccac gttaattctg atgcattgat tttaggaatt
     1981 gccgctgcgg tagaagagac taccaaagag gatgaaaaag agacagtaac cgcgattaaa
     2041 accggtttaa tggggccgtt agcagggctg ggagacagct tgttgaaatt cacctggtta
     2101 ccgatttgcg gtagtatcgg ggcggcattg gcactaagtg gcaatgtgtt aggcccgatt
     2161 ttaatgttct tgttgtataa cagtgtaaac attgcgacga agtattacgg tatccatcta
     2221 ggttacagca aaggggttga tttaattcac ggtgcgggta ataacatttt gcaacgactc
     2281 ggcaatatgg caaatgtggt tggtttaatg gtgattggcg cattaattgc ctccgttgtg
     2341 aaagtcaaag tagtttcaca aattgccgct ggtgataatg tgattaaatt ccaagagatg
     2401 ttagataaag tgatgccggg actactcagc ttacttttaa ctgtcgtgat ctactggatt
     2461 ttgaagaaaa ctaacggcaa atatgctgca acgatgatcc ttgctacgat ggggatctgt
     2521 atcggcttag tctatgcagg aatactcggc taatggacag tgtgtatgac attattcggt
     2581 tggaacaggg cagatacctg ttccgccaac agccggctca atcggtacag attttctttc
     2641 tggacaaccc tgacagtaag gatagcaaat ggctggcgga gactgatttg gcagagtttg
     2701 agctgaaatt gagcgcttgt gaagcccgtc cgttcttcct cattcaatca gcaaacggag
     2761 aacagattgt tgctgaacgc accttacctg ttgccggaat gaataatttt cgggatatgg
     2821 ggggctatgt cgctcatcag ggcaagcgag tgaaatgggg caagttatac cgctccgatc
     2881 atctgcataa tttaagagac gaaggcgtgg cttatcttga taaattggga attcagactg
     2941 ttattgacta tcgcagcccg aatgaagtcg ccaaataccc aaatccccca attaatggca
     3001 gagagcaaac ttttcggctt gatccgaatg cacatactgc cgagcttgct gcccaattta
     3061 gtgcagacaa gcacgatgaa gatcgtaatt tggtcaataa aatcattgct caaaaagctg
     3121 aaggtaatct tatcaatcgc tacgacattg taatggcaca atatcgtaat tttgtcgaaa
     3181 aagcagaatg ccaaaccgcc tttgctgaaa tgttaaggtt ggcgacagac cctgaaaatg
     3241 caccattggt tcaacactgc cgtggaggga aagatcgcac tggtttcggt gcaatgttac
     3301 tgcttggtat tttaggcgtg agtaaagctg atattattgc tgattatatg cttactcatg
     3361 ataaccgcct tgctcgtaac gaagagaaaa tggcgattta ccgtaccttc actcaagatc
     3421 aagatgtgtt ggactaccta ttgtctttaa tcgatactca acccgaattt atcgaacaat
     3481 cgcttaatac tattgaaacc caatatggca ctattgagca atatgcccaa agggtattag
     3541 gtattactgc gaaggaaatt gaagcattac gggcaaatta tttggcgtag aacggtaggg
     3601 tgtaatattg aacacactac aaatggagaa atttcatatg cgttattttg caaaacattg
     3661 gtataaaact accgcttgtc tgacaacaat tttcacagca tttcctcttt ttgctcaacc
     3721 aattgaaaat ataccaactt cccactacga attagaaaaa atcattatat ttagccgaca
     3781 cgggttacgt tcccctctta cagaaaaagg cagtgattta gaaaaatcaa ccccttataa
     3841 atgggcaaat tggagtgtac cgaccggtca tttaacccat aaagggacgc tgttggaaac
     3901 ctattttggg cagtatcttg gtcaatggct cacacataat gggttattgg acaaggcaag
     3961 ctgtgaaagt gggaagcaga ttgaggttta tgctaatagc ctgcaacgta caattggcac
     4021 tgcacaagct ttggttgccg gtgggttttc aggttgtaat gtacaagtta aacaccacca
     4081 gcagattgga aagatggatc cggtgtttaa tccaattatt cgctccgatg accagacatt
     4141 tgtgcaaaca gcattaagca aaattgacct caataaaacc catcagtatt tagcgccatc
     4201 ctatcattta ttaagcgaaa taatcgatta tgctcattca gaaaaatgtt tgcaggaaaa
     4261 acagtgtgaa ttttttaatg atgttggtaa attaaggatt aaaaaggata aagaaccagg
     4321 tgtttccggt acgatgcgat taagtgaaaa tattgtcgat gccttattgc tgcaatatta
     4381 tgaaggtctt cctttaaaag agattgcaaa taaccagctt gatagtgatc agaaatggca
     4441 aacactcaat aaaattaaaa acgattacca atttatgcta cgaggagatc catttattgc
     4501 taaacatatt tcattaccgc tattaaaata tattcagcaa gatttaaata gtgaaaataa
     4561 aataacactt ttagtcggac acgattccaa tattatagcc ttactttctg cattaaatgt
     4621 taagccttat aaattagcac atcaatatga acaaacttca ataggaggga aagtctttat
     4681 tgaaatctga aaagaaaaaa gtagccaagc acaaaaagtt aaactggaat atgtatatca
     4741 atctactgac caaattcgta aagcgattcc actaagcctt gataaaccac cgcaacatca
     4801 cattttgagt ttggattatt gccaagctga ccaatatgga ttatgcgatt atatggaatt
     4861 taaacagtta ctggaaaaag tcattgctga tacattgtga gattttgaca aagtgagcga
     4921 aaaaggtagc ataaaaaagt cgggacagtt gccagctgct ccctgtaaga tgttgtttac
     4981 agcactagta atgctactat ccccaaaaag ctgctgaaag gcagcttttt tgttgtatat
     5041 aaaagtacac ctttctacgc ttcattcttt ttctccaatt aaacctaatt taggacttct
     5101 agtgataaat tcggtatcat atcttaattc actacatatc gtgcaagcct taaaattgaa
     5161 agggctgacg aaatcctatt taattctgac acacataagg gaatattatg tcgcaagata
     5221 ttcaagccga tttaaaaaag atattggcac tattaagccg taaccgtcga tttcaatcat
     5281 tatttttatt actgttaaga agtgaacaat ttattaatag tgatgcactt tctacggagt
     5341 tacagctttc agtacgaacg gtaaaaaaag agattaagtt attaaaagaa aaacttgaac
     5401 cttacggcat tcagattttt tctcgaccgt tttatggcta taaattattg attcagtttg
     5461 aagaattaca cacgcaacta aaacagtatt tccaaatatc acagccgatg acggtaaata
     5521 ataaatttga gtctcgggta aatgcgattt tacgccgatt actggtgagc cagcgtgcat
     5581 tgaaagttga agattttcag agtgagcttt atttaagttt taccagtgcc ttaacaaaag
     5641 aatttagtca agttaaagcc ttgttaggaa aatatggatt gatactcgaa gcgaaaccct
     5701 atcacggaat gaacattgta ggtgaaagtt atcgtaaaat aatgctcaca gtacgattat
     5761 ataaatattt tacccagctt gaacatccat ttggaattaa agaatttgaa cagtgttttg
     5821 cttgtcctat gactgaaaaa atccgtgaaa ggttagctaa gacaattatt catttcaatt
     5881 tagtattttc tgatatttat gctgagcggt ttattattta cttacgctat ttttataatc
     5941 aacagcctga gttattgtta ccgaagttaa attttaatta tcaacagacg aatgaatatc
     6001 agtttgtaat taagttactg gaacagcttc gtgaacaaga cagtcgtttt gagtttaatc
     6061 cggaagttat tcgatttctg acctatattg cgatagccag tacagatctc taccgcttta
     6121 aagattgtaa ttcggataat tacccattgt tgctagataa ggcttgggaa attcatcgtt
     6181 ttatttttac tcagttttct gcatatttaa atttatcgga aattcacgat gacacttgcc
     6241 gtaaagattt gcttaaaatg ctgatcccta tcgcaatgaa aatgatgctt agcatttcag
     6301 atgatgtgga tttagggcta tttaaccaaa cagaactaca tagaaatcca attttggctc
     6361 atacagtaga aaaattagtg gatgacattg aaaaaaacta cgggtatagc ctatctattc
     6421 gagaacagta ttttattttt gatatttttt ccggaatggt taatcgaatt gaattagaac
     6481 gtaaaccgct ccgactggcg attattgccc ttaatggcag attaagcacc caacagttaa
     6541 aacggaatat taagcggtac ttttccgact atattttgaa aattgaaacc aaagtgctat
     6601 atgagcttgc cataatggaa gataaacctt atgactacta tctctgtaat gaatatggaa
     6661 aaaatatggc tattccctat aagcctattt attttgctga cagtagttta aatgaaaatg
     6721 aatatgcaac atcactcaac gaagtatttt atcacgctta tcaatatgat gaggtgttgc
     6781 ctagcattaa atcgattgaa attgaagcac aatatcgcct aaatgagttt
//
LOCUS       DANLUT010000130         6662 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLUT010000130 DANLUT010000000
VERSION     DANLUT010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6662
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..853
                     /locus_tag="PXB38_001993"
     CDS             <1..853
                     /locus_tag="PXB38_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5354274.1"
                     /translation="RTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGKADKLV
                     GVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQIKASGI
                     PLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHSTDKEV
                     LVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADVILLAS
                     RNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYAHQILT
                     TIQPCLK"
     gene            864..1850
                     /locus_tag="PXB38_001994"
     CDS             864..1850
                     /locus_tag="PXB38_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5354275.1"
                     /translation="MKLHLTLIFTLIISLVVCTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGTLFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYIADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            1850..2656
                     /locus_tag="PXB38_001995"
     CDS             1850..2656
                     /locus_tag="PXB38_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354276.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(2677..3315)
                     /gene="purN"
                     /locus_tag="PXB38_001996"
     CDS             complement(2677..3315)
                     /gene="purN"
                     /locus_tag="PXB38_001996"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL5354277.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(3422..5620)
                     /locus_tag="PXB38_001997"
                     /pseudo
     CDS             complement(3422..5620)
                     /locus_tag="PXB38_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(5674..6510)
                     /locus_tag="PXB38_001998"
     CDS             complement(5674..6510)
                     /locus_tag="PXB38_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL5354278.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
BASE COUNT         1985 a         1427 c         1247 g         2003 t
ORIGIN      
        1 gagaacctta cttttttctt tcattgccct atcaatgtgt ttaaatacca caaaggcggc
       61 agaaaaaatt gtttcaactg cgggctatgc ttccgaaatt gtcgcagcac taggaaaagc
      121 tgataagtta gtcggtgtgg ataccacttc agttaaacct caaacgataa tggagaaaaa
      181 acctaaaatc ggttatcgtc gccagctttc tgctgaaggt attctctctt taaccccaga
      241 tttgattatt ttagcccctg atgccggccc taacgcagtt attgagcaaa ttaaagccag
      301 cggtattcca ttacttcact taggagagaa accgagctta gcagggattc gtgaggatat
      361 tcagcaaatt gccaaggcga ttggtgcaga atcagaggca aaacaattaa cagaaaccat
      421 tctggcagat gaaaaaaaat tagccgacat tcgtagccaa cattctactg acaaagaagt
      481 cttagtgctg attgacactg catcgcaagg tatctttggg ctagggaaaa agagtgtggg
      541 tgatcatttc ttaaccttgt taaatctaaa caatagtttc aatgctgagg gcaataagcc
      601 actcgccaat gaggctttag ctgcaagcaa tgccgatgtt attttattag cctcccgtaa
      661 tcaggcaaaa gaatctgcaa cgatcagtaa attagcagaa tccagcccac aatacgccca
      721 actcacaaat acacaagcgg gcaaaaaagg ctgtgttttt gcaatcaata ttttagatgc
      781 cttgggattt gggccttaca ctgctcaata tgcacaccaa attctcacca ctattcaacc
      841 ttgtttaaaa taacggatac gctttgaaac tgcatttaac cttaattttc actttaatta
      901 tcagcttagt ggtttgtacc catttagggg cgatgtcatt acccctatcc gcttggcact
      961 gcaacaacgc tgaatgcgaa agtgcagcct atattttatg gcaaatccgc ctgcctcgat
     1021 tactagggac attattcatc ggggcagctc tcgctattag cggagcaaca atgcaagggc
     1081 tgtttcgcaa tccgttagta gatccgggga ttattggtgt ctcttcaggt gctgcattgg
     1141 ctgcggcatt atatatcgtg gtgattcagc cactactgcc ggaatcaatc agctattatg
     1201 ctctacctat tgccgccttt ttagggggct ggctggtgac ttttatgctc tatttacttt
     1261 ctcaacgtaa cgggcaacta catatcgcca ttatgctatt aattggtatt gctctagctg
     1321 catttagtgg cgctttaacc ggcatactga tttatattgc cgatgataac caacttcgta
     1381 gtttaacctt ttggagtatg ggatctttag caggtatgaa ttggcaaatg gtggcaatga
     1441 tggctgcggt tgtcttcatt tgtagcccac ttatttggcg ggaacaccgt gcgttaaacg
     1501 ccttaacatt aggtgaagaa gatgcacaat acattggttt tgacattgca aaagtcaaac
     1561 gccgtcttgt gttttacgtt gccttattaa ccggcacaag cgttgcctgt gttggggcta
     1621 tcggctttgt cgggctggtt attccacatt taatgcgttt actgggaggc agtaaccacc
     1681 gccatttatt actcaatagt ttagtttgcg gtgcaatctt attaatgatt gcagatactc
     1741 ttgccagaac cctagccgcc ccggcagaaa tcccgattgg tatttttacc gccttatttg
     1801 gtgcgccatt ccttgcagta atggtatgga aaagtgggaa acatatctaa tgagcaattt
     1861 attaacttgc caaaatttaa gcatcgttca tcaacaaaaa aagttgctgg agattcaaga
     1921 aattgccttt gaacaaggaa aatttaccgc catcatcggt ccaaacggag ccggcaaaac
     1981 aaccttgctc aaagccttaa gcggtaataa tgcacaaact aacagtgccg tattttatca
     2041 acatcaacgc ttaacagact taaacggata tgctctggct caaaaacggg caatgctcag
     2101 ccaacagagc caaattgcct ttcccttaaa agtagaagaa ttggtacaac tcggaagaga
     2161 gccatatcgc caaagtgaat ttgcaaaatt taatgaaaaa ataaccgctt gggctatgga
     2221 aacaatgtct ttaaccgcat taaaagaaag aagtagcata caactttccg gtggagaaca
     2281 acatcgagcg catattgctc gagtgctggc tcagctcgtt cctgaaccga atgccgattt
     2341 aagcggaagc tggcttttgc ttgatgaacc caccaaccat ttggatattc atcaccaata
     2401 tcagcttttt tccttactac aaaagctgaa acaacaaggc ttaactatca ttgcgatttt
     2461 gcacgatcct gcattggcaa taaatcaagc cgatcatatc ttaatgctaa aaaatggaga
     2521 aaaatttgct gaaatgtccg ctaaagccat tgcagaaagt tgtttattag atgagctgta
     2581 tgaaatgaaa atgggctgtc gctattgccc tcacagcggg caatattatc tttgccctgc
     2641 attagctgaa agttagggtg cgatgcaccc tatcgtttaa tcttctgcat atccacaagc
     2701 aggcagtagt ttaccgtcta aatacgcttt gccgtgctga gaaactaatc tacccgaaca
     2761 gaaccactca atcaccaacg gataatatcg atgttcttgc tcaaccactc gagccattac
     2821 atcttcaatc tcatcttcag gataaatcgg cactttagct tgtaatacca ccgcaccagc
     2881 atccacttct tcattcacga aatgaatagt cgtgccgtgt tcactttccc cagcctctat
     2941 cgctctttga taagtgttta gccctgggta tttaggtaat aaggaagggt gaatattgag
     3001 tattttgcca gcaaaatgtt gcgtaaattc aggcgttaaa attttcatat agccggctaa
     3061 tacaattaac tcagctccta actgctcaat ttgttcggca atcgcaagat ccatttccac
     3121 attgctttgg taatctttac gagaaaatac aaatgtcggg attcccgcct gtttagctcg
     3181 aatcagccca taggcatctg ccttattgca aattacaccg caaatttgac cgcttgtatc
     3241 cgcagatttt tgcgcatcaa tcattgcttg taggttagaa ccattccctg aaattaaaac
     3301 cacaaatttt ttcatattac acaccggctg aatattcatc gttctggata ttatgccttg
     3361 aatctcaaca tcagtacagg aaagaaaaag ggcttattgg ttaaaataag ccactttcaa
     3421 gctagaaacg cacctctgcc cctagtgtgt aagttcgacc tctggcacta tttgtgaaac
     3481 gataggtgtc tgtatcatag tcatactctt ctgcggtgga agagttatac gcatttaagg
     3541 catcaagata atttcggttc atcacatttt gtaccccggc ttttaaggtt aaatgtttat
     3601 tcactttgta atttgcatat aaatcgataa tcaccggaat attcggtaac tgctcgtgaa
     3661 taatgttgcc atcttcgtct aaatcaatac cgacacgttt cgctttgcct gtatatttaa
     3721 aaatgctaga cagtgttaat tttttatcca gcaatttagc ccctagctcc aaagtcgcat
     3781 aatcttttgg tagctgggta taagcttcag tgccaaatcc ataaagaata gtcgcacctt
     3841 ttgaagtggg tgctgtgctt tcagttcggg tataactacc attgacaaaa aagctatcgg
     3901 aatcgtaagc cagctcaact tcccaacctc gatttttaac cttttcaggg tgattcacat
     3961 aaatttggaa ctgtatggca ttggtagcat cacttgaatt tcgacatact gttggcccac
     4021 aaccatacaa cgagaggtta tacaaatagt ctttaatgcg tgagttaaaa tataccgctt
     4081 ttagccccaa gatatcatta ttgagtaata cattatcttg atgaatatta aacccaatct
     4141 cataggtttt cgcactttct ggtttcaaaa acgggttcac actcaagcca tttcgactgg
     4201 tattaaacat ttcttgcaca ttaggcgaac gggaggtttg tttgtaactg acaaaaggtt
     4261 gaaaccaatc agcaacctga aatgctaaag tggcagaagg attcaactta taatgttttt
     4321 tattaacatc aaacccaaaa gaagggaaac aataatccat atcatcgcta tcgcattctg
     4381 gcttatatcc ttttaactga tagcgtgaat agtgaagact tgaatttaaa gtgacaatgc
     4441 cgtatttcca ttcggtgtct aggtaaaggg aatcaatatt ttgcttacct gccggcccaa
     4501 aagcggcatt gctaatcgct ccatcattat tcttactttc cggtaaatca cgggaatatt
     4561 tatttcgcat taaatttata ccataagtca ataatgctga taatttccct gactcaaaac
     4621 ggctggtgtt attcaaatca aacatccaca ttttgttttt ggttgaggca tcttctaatg
     4681 tccatagttt tgcatcatcg tggaaatctt gcttagtttc tgttactgct gttaggaatt
     4741 tcagatcaat ccaatcagat tgaggctggt aactggattc taaggaatag gtcacactat
     4801 caatattacg ccccactaag ctatttttat attgacgtcc ggacaattta aactctgaat
     4861 cttgatttgg cttaaaggcc atttttccca tataagattc agggtgattt tttaaccctt
     4921 gcatataagc agaatccgtt gccattgtgc cattacctcg gcgataattt tgactgatac
     4981 tacttttgct aaaagccaat aaactgccaa gagaaccact ttccagcaca tcaacttttc
     5041 cggctagtgc aagcattccg ttttttcaca gatcattatt gccataatta aaacggctta
     5101 atacgccgac tttatgttgt tctagtagaa tatcttcgac atcaatcgtt ttaaaattag
     5161 cactaccggc taaagcattc aatccggctg caccattgtt gtagcctttc gcaatatcaa
     5221 ctcgggttaa aaaattttga tcaattaaag tgctgaattg gctcattggc ccgttaccat
     5281 cagtgtggaa cttaccaccg ccgtttgctg atgtaccaag ctgtgtttgt ggcacgccat
     5341 caactaaggt atttacccga ccaagaccac tcatattacg aatattcaca ctcacgcccc
     5401 cttgccccgg gtcaatttgg gtatagccac ctgcgacaga acggacaata ctatctaaac
     5461 tttgcattgc attcacattc attgctcgag aactcaccga gccggcttta ctgaaattct
     5521 caaaattagg gttttccaca gtgccataaa ccgtcacagt atcaagctcc gcaatatttt
     5581 tcgccttttc ctctgccaat gcagtttgcg atcctcccat acacaaaacc ggaaacaaaa
     5641 tgcgtgtgat tatattaaat ttcataattc tccttattga gtgacccaaa gataatctgc
     5701 ctgtgaagaa gtaatttctt ctctctctgt tttaagcatt agcaccgcta ctttttttgt
     5761 tcggtcatat tccgcaatat gcaacggaac gccaagatct ttgcgaacgt ggtggttacc
     5821 tgcaatcagc aagctagtcg ataacgcatt ttttactaat ttttctgcca ttctgcgatc
     5881 acggaattgt tgtactgcca ccatattttc catcgggtaa ggcattccgt gattcattga
     5941 cagcaacagt tgtgcgatct tttgcttaac ttcagaggaa gtggatacag aaccttttaa
     6001 tggctccgcc ccatttaata aaatttcaac ctctttatct gttaagttag tggctataac
     6061 acgactattt gaacctaagc tctctaccac taaatcttga tacatcttcc aatcccattt
     6121 ttgccattga attgcctctc ttaaatccgt ggctgataaa ttaaccggtc ggttaaactg
     6181 aatgcgatca atcgcaggct gctgatccac atttaacatc tccaacgcaa ttaaatgtaa
     6241 cttggctttc ttcgtaagtt gattaaataa atacaattca atttggtggt gaattaactg
     6301 agtatgctcc tcaccaacta aaacgtaatc ttgagaagat agacgggaaa gtagttcagt
     6361 aaatgaaatc gtttgattgg tattcagatc aataatttgg ccgatagagt ccacgttttg
     6421 ttcattaagg gattgcgttg aaaccgagca gcctaaaaga aaaaaagcca taaaaaggct
     6481 agctaaaaaa gaggaaatac gaggtaacat aacaaaaaat aaattaatga gaattattat
     6541 cattatgtta tgtaaaaaaa gaaaaatcaa tccattttca gaaaacagat aaagaaaatg
     6601 attgataaaa caaaaagcgg taatatttct aaaaaatatt tcaaacttaa gtgagcataa
     6661 gg
//
LOCUS       DANLUT010000131         6637 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLUT010000131 DANLUT010000000
VERSION     DANLUT010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6637
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(1..732)
                     /locus_tag="PXB38_001999"
     CDS             complement(1..732)
                     /locus_tag="PXB38_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354279.1"
                     /translation="MKTVKENRYANLLLLIEEAGSVPRLEEKTGVTANYLRQIKNKNA
                     IQNGKPKGIGDKIAAKLEDGMNKPRGWLDQIHSEQSNLINSRIGNDEQELQEQDLNDF
                     IIIDVLDVSASAGFGSSSELVEVVNQMRYVPEQFYSLFRNMAPRYIRIINLSGDSMYP
                     TFSSGDMLFVDISVNEFTGDGVYVFTYKGHLYVKRLQNTGDQLLVISDNKLYEKWSIK
                     EENQDQLFIHARVKVHQSQQLNFIG"
     gene            857..1108
                     /locus_tag="PXB38_002000"
     CDS             857..1108
                     /locus_tag="PXB38_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005662003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354280.1"
                     /translation="MQLQEYLESSERGEMARLSKAIKVAQPIVSFWVNGKRQVPAERC
                     PDIEKFTEGKVTCEELRPDVDWAVLRNSGNKKPPLEIGY"
     gene            complement(1113..1484)
                     /locus_tag="PXB38_002001"
     CDS             complement(1113..1484)
                     /locus_tag="PXB38_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354281.1"
                     /translation="MFSLLRDLFAYIVSLSALVFTVKIGSFNENLQHAIVIILPLLFI
                     VIHELIVRKFKKEFDNQAYFSAIVGVALFAALGSFSKSELIELGFKIDDISTFFIFKL
                     YFHTWAIVLLPVALKKFFKKH"
     gene            1654..1896
                     /locus_tag="PXB38_002002"
     CDS             1654..1896
                     /locus_tag="PXB38_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354282.1"
                     /translation="MYGINLNLNEKSSQTQNARILAHLQNGGRITSLSALDDFGCLRL
                     SARIKDLRDRGHDIQSVFITVPNGKKVKQYFMECAK"
     gene            1893..2244
                     /locus_tag="PXB38_002003"
                     /pseudo
     CDS             1893..2244
                     /locus_tag="PXB38_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596652.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2382..2666
                     /locus_tag="PXB38_002004"
     CDS             2382..2666
                     /locus_tag="PXB38_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354283.1"
                     /translation="MLLEQFGITGKLAEDFIVHRKAKKAPITETALNGYQREADKAKI
                     PIQKAVEIAIERGWTGFKADWQWQDDQPKHRPKDNMRAEWNNPEAWAEVF"
     gene            2666..3313
                     /locus_tag="PXB38_002005"
     CDS             2666..3313
                     /locus_tag="PXB38_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5354284.1"
                     /translation="MSLQKTEQNRPLAVLGEQQGKLSGEVESLVDRIFDQLLASCPSI
                     QYWSEKQVATAKKQWILGFAENGIRTVEQVRQGMKALRAKTDDFVPSIGKFIQWCNTI
                     DYHELGLPDLEQLLKLLDRSLRFDFIEIQKLKFKSNAEYWLITDLYARNKKYSWKDET
                     LRNQAEKALVAMAKRIMSGEQIPPPKPLIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            3310..3882
                     /locus_tag="PXB38_002006"
     CDS             3310..3882
                     /locus_tag="PXB38_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5354285.1"
                     /translation="MTDFDKDTYQTPKYFRNWLNHRYAWFHIDGCSNGKNALYSYWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILERVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTGEEVKGNNKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            4001..4453
                     /locus_tag="PXB38_002007"
     CDS             4001..4453
                     /locus_tag="PXB38_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5354286.1"
                     /translation="MAKYQMMKLPGGILSPLNDEEAERLKSFQNGEQYEIEIKRQRNP
                     AFHRKVFAFFNFCFDCWSGSHSDWEFQDPTAQFDTFRKHLTVMAGFYVQTWNLKGQVR
                     IEAKSLSYANMEQDEFEQAYKALINAAIKHVFNNTKDENTINQLYSFF"
     gene            4503..4715
                     /locus_tag="PXB38_002008"
     CDS             4503..4715
                     /locus_tag="PXB38_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354287.1"
                     /translation="MKKNVIRYWLSVPFRIIAVLISLSILTLRYIGYLLIYPLAFFVA
                     VGSFIVIGQWKYQECLDDFKSDFNPI"
     gene            5092..5376
                     /locus_tag="PXB38_002009"
     CDS             5092..5376
                     /locus_tag="PXB38_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005672808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 domain-containing protein"
                     /protein_id="HDL5354288.1"
                     /translation="MANLRKEAKGRECQVRLPGICNHNPETVVLAHYRMAGLNGVGMK
                     PDDIFGAWACSSCHDECDRRTRKLEADYVRQAHAEGVFRTQAILRREGKL"
     gene            5373..5741
                     /locus_tag="PXB38_002010"
     CDS             5373..5741
                     /locus_tag="PXB38_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5354289.1"
                     /translation="MSDWLEIALPYPPSVNHYWKHTRNGRHYISDKGKAFRAEVVKIC
                     KMFDPFKGAVQTVLQIYYPDKRKRDPDNLEKALWDALKIGGLIEEDDNQILVDKRTIT
                     AGFKKGGMVVLKIKAVGNAN"
     gene            5731..6096
                     /locus_tag="PXB38_002011"
     CDS             5731..6096
                     /locus_tag="PXB38_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354290.1"
                     /translation="MQIDVKGVLNLWGGYVRFTDCKGYPTMQAFMRESPQERTKQRYL
                     ARLDDDTLEKVDRQMRKLQANDKRQFDVLFYKYAVGLENKQVWQKLSLSKTSYHTELL
                     LAERFMEGALAGSEIRLLL"
     gene            complement(6064..6258)
                     /locus_tag="PXB38_002012"
     CDS             complement(6064..6258)
                     /locus_tag="PXB38_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354291.1"
                     /translation="MALSRTEIVNRSNAKRGIKLKAFKLHESTIAQIEQLAQQLNIPQ
                     NQLIKLAVEKLQEQTNFTTG"
BASE COUNT         2068 a         1137 c         1468 g         1964 t
ORIGIN      
        1 ttacccaata aaattcaact gttggctttg gtgaactttt actctagcgt ggataaatag
       61 ctgatcttga ttttcttctt taatgctcca tttttcatag agtttgttat ctgaaataac
      121 taataattga tcacctgtat tttgtagtct tttaacatac aaatgtcctt tatatgtaaa
      181 tacataaaca ccatcgccgg taaactcatt tacgctaata tcaacaaaaa gcatatctcc
      241 cgaggaaaat gtcgggtaca tagaatcacc acttaaattg ataattctga tgtatcgagg
      301 tgccatattc cgaaagaggg aataaaattg ctcaggcaca taacgcattt gatttactac
      361 ttcaactaat tcactgcttg agccgaagcc tgcactagca ctgacatcta atacatcaat
      421 tatgataaag tcatttaaat cttgctcctg caattcttgt tcgtcattgc ctatccttga
      481 attgataagg tttgattgct ctgaatgtat ttgatctaac cagcctctag gtttattcat
      541 cccatcttct aatttggcgg caatcttgtc accaatgcct tttggcttac cgttctgaat
      601 agcattttta tttttgattt gccttaaata attagccgtg acaccagtct tttcttccaa
      661 tcttggcaca cttccagcct cttcaattaa gagtaataaa ttagcatatc gattttcttt
      721 cacagttttc atactaacct ccacattttt tccattttaa tatcaaaatg atatcaaatc
      781 acacgatatt tagatattga ttagattttt cttttaagat atcatttaga tattctttag
      841 gttttatgga ggctgtatgc aattacaaga atatttagaa tcatcagaac gaggggaaat
      901 ggctcgccta tcaaaagcaa tcaaagttgc tcaacccata gtgtcatttt gggtaaacgg
      961 caaacgccaa gtaccggcag agcgttgccc ggacattgaa aaatttacag aagggaaagt
     1021 aacttgtgaa gagctacgcc ctgatgttga ttgggcagtt ttacgaaatt caggcaataa
     1081 aaaaccaccg ctggaaatag ggtattaacc ccttaatgct tcttgaaaaa tttctttaat
     1141 gcaacgggta gtaacactat tgcccaagta tggaaataaa gtttgaaaat aaagaatgtt
     1201 gatatgtcat caattttaaa tccaagctca ataagttcac ttttactaaa agaacctagt
     1261 gcagcaaaga gggctacgcc aacaatggct gagaagtagg cttggttatc aaattctttc
     1321 ttaaatttgc gaacaatcag ctcgtgaatg acgataaata acaatggcag gattatcact
     1381 atggcgtgtt gtaaattctc attaaacgag ccaattttaa ccgtaaatac tagagctgaa
     1441 agagaaacga tataagcgaa taaatctcga agaagcgaaa acatagaagt taccaacaat
     1501 gaaaaatttt ttagagaaac tcaaatcatt ctatcacagt gaaaattcaa tttttattag
     1561 agtggcaatt tttatgctgc ttgcgtggtg ggtttttaac aattaaaaaa accaccgctg
     1621 taacggtggc taattactaa ggaggtttcc tatatgtatg ggataaatct taacctaaac
     1681 gaaaaatcaa gtcaaaccca aaatgcaaga attttggcac atcttcaaaa tggcggtcgt
     1741 attacttcgc tttctgcgtt agacgatttc ggctgcttgc gtttatccgc tcgcattaaa
     1801 gatttgcgtg accgtggtca cgatattcaa agcgtattta ttacagtgcc gaatggcaag
     1861 aaagtgaagc agtattttat ggagtgtgcg aaatgagatt tagcacttac atcaacaatg
     1921 caaaatgcct tgaatggaac ttaaatgcta atcaaggagc attatttgat ttactgaatc
     1981 aagctcctgc ttgggcgaaa gaaatcatta ttgatggcgt ggtttattac tgggtttccc
     2041 gtaatgcggt gatcgaagaa ctacctttgt tttactcaaa gcctgatacc gtctatcgcc
     2101 attttgtcga gtttcacaaa aaagggttga tcgtgtatca aaaacacgga gataaagacc
     2161 ttattcgatt aactgaaaaa gggaagactt ggaatgagtt taactcggat ttaaatccga
     2221 cactcggaaa taaatccgag ttagctcgga aacagatccg aaaaagctcg gatttaaatc
     2281 cgacaaataa taatactaat tataaaaata ctaatgatca taataatacc cttacgggta
     2341 ttaacgcaca cacacgtgag actaaaaaat ctgctgtgtt ggtgttgctt gaacaattcg
     2401 gcattacagg caaattggcg gaggatttta tcgtacaccg caaagccaaa aaagccccga
     2461 ttaccgaaac tgcactgaat ggctatcagc gagaggcaga caaagccaaa atcccgattc
     2521 aaaaggcggt agaaattgcg attgaacgtg gctggacagg atttaaagcc gattggcagt
     2581 ggcaagacga tcaacctaaa catcgcccaa aagacaatat gcgagctgaa tggaataacc
     2641 ctgaagcgtg ggcggaggtg ttttgatgag cctgcaaaaa acagagcaaa atcgaccgct
     2701 tgcggtgtta ggtgagcagc aaggcaaatt atccggtgag gttgaaagcc ttgtggacag
     2761 aatatttgac cagttgcttg cgagttgccc aagtattcaa tactggtcgg aaaagcaagt
     2821 tgccacagcc aaaaaacaat ggattttagg ctttgcggag aacggaatcc gcacggttga
     2881 gcaagttcga cagggtatga aagcgttaag agcaaaaact gatgatttcg tcccgagtat
     2941 cggcaaattt atccagtggt gcaatacgat tgactatcac gaattaggat tacctgattt
     3001 agagcagtta ctcaagcttt tggatcgctc tttaagattt gattttattg agattcagaa
     3061 acttaaattt aaatcaaacg ctgaatattg gttgataact gacctatacg cacgtaacaa
     3121 gaaatatagt tggaaagatg aaaccttacg taatcaagca gaaaaagcct tagtggcaat
     3181 ggcaaaacga attatgagcg gagagcaaat tccaccacct aaaccgctaa tcgaagagaa
     3241 aaagaaagtg ccaatagatc cacgcattca gcgaattttg gacgagaaga aacaagcagg
     3301 agcaatgcaa tgacagattt tgataaagac acttaccaaa cgccaaagta tttccgtaat
     3361 tggctaaatc atcgctatgc gtggtttcac attgacggtt gttctaacgg caaaaacgca
     3421 ttgtatagct actggattgg caaagcggca gaaggcttgg acgaagacac gctaagtggt
     3481 cagattgccg aggatttctt ggcagaaaac ttgctcgatg tgatcttgga acgtgtggca
     3541 gattggggcg aattactccg tatcttcgtt aatccgccat atagcaatcc actccctttt
     3601 gttcagcgtg ctgcggagct gaaaaaagcc ggtcatattg tggtaatgct gttgccggca
     3661 gacaaatcta ctcgttggta tcaggttatc caagaaaacg ctagtgaggt gatcgacatt
     3721 atcggtgggc gtattaattt tattaatccg ctcacaggcg aggaagtgaa aggcaacaac
     3781 aaaggctcga tggtagcggt gttcgacccg tttgtggagg gaatagttac ccgtcaaatg
     3841 ccgctggata agattaagga gctgggcggc tatgaaaaat aacgaagggt gggaagtgtg
     3901 atgagtgatt ctactattgg atttttaggg attctaattt tcttcgggtg gttagcatat
     3961 ttggtattta gagcttttgg attttcattg agggatagag atggctaaat accaaatgat
     4021 gaaattgccg ggtgggattt taagcccgtt aaacgatgaa gaagccgagc ggttgaaatc
     4081 gtttcagaat ggcgagcagt acgaaatcga gattaaacgc cagcgtaatc ccgcttttca
     4141 tcgcaaggtg tttgcgttct ttaatttctg ttttgattgc tggagtggta gccattccga
     4201 ttgggagttc caagatccaa ccgctcaatt tgatactttc cgcaagcatt taactgtaat
     4261 ggcagggttt tatgtgcaga cgtggaattt aaaagggcaa gtgcggattg aggcgaaaag
     4321 cctaagctac gccaatatgg aacaagacga gttcgagcag gcttataaag cgttgattaa
     4381 tgcagctatc aagcacgttt ttaacaatac caaagatgag aatacgataa atcagttgta
     4441 ttcgtttttt taattaaggc gaaatcgcca tatttaatta ggtttaattg caggagatta
     4501 aaatgaaaaa gaatgttatt agatattggc ttagcgtgcc attcagaatt attgcagtgc
     4561 ttatttcttt gtcaattctt actcttagat atatcgggta cttattgatt tatccattag
     4621 cattttttgt ggcagtcggt agttttattg ttatcggtca atggaaatat caagaatgcc
     4681 ttgatgactt taagagcgat tttaatccga tttagtgtgt gtttattaat tccctcgaat
     4741 tcgggggtag gagaaatcaa aatgacaaaa attctttgaa actatcgcac tcgtgatgtt
     4801 atttggcatt attccaagct gtttattggc gattaatact actttaatga atattaaaaa
     4861 cgcaccgtgg tttatggtga ttattcagtt agggttttgg attttaatat cgtttgttat
     4921 cggttgcgga ttattccttt tatgtggaat gttatttaat ttaaggagat taataagtga
     4981 gccagtgcaa tgaactgact gtaattttaa tcactatcgc tattcttagt gtatgtgccg
     5041 gttcactctt ttttattgag tggtttgata aaagagacca aggaggttgg aatggctaat
     5101 ctacgcaaag aggcaaaagg cagagagtgc caagtccgtt taccgggtat ctgtaatcat
     5161 aatccggaaa cggtggtatt ggctcactat cgaatggcag gattaaacgg tgtgggaatg
     5221 aaacccgatg atattttcgg ggcgtgggct tgcagtagct gccacgatga gtgcgaccgt
     5281 agaactcgca aattagaagc ggattatgtg agacaggctc atgcagaggg cgtatttaga
     5341 acgcaggcta ttttacggag agaagggaaa ttatgagtga ttggcttgaa attgcgttgc
     5401 cttatccgcc gagtgtgaac cattactgga agcatacccg aaacggtagg cattatattt
     5461 cagataaggg gaaagccttt agggcggaag tggtgaaaat ctgcaaaatg tttgatccgt
     5521 ttaaaggagc ggtacaaacg gtattgcaga tttactatcc tgataaacgc aagcgtgatc
     5581 cagataattt agaaaaagcc ttgtgggacg cattaaaaat cggtggctta attgaagaag
     5641 acgataatca aattttagtc gataagcgaa ccattacggc aggttttaag aaagggggaa
     5701 tggtggtgtt aaagattaag gcggtgggta atgcaaattg atgtaaaggg tgtattaaat
     5761 ttatggggtg gatatgtgcg ttttaccgac tgcaagggct atccgacaat gcaggcattt
     5821 atgcgtgagt ctccacaaga gagaacaaaa cagcgttatt tagcccgctt agatgatgat
     5881 acgcttgaga aagtcgatcg gcaaatgcgg aagctacaag cgaacgacaa gcgacaattc
     5941 gatgtactat tttataaata tgcagtaggg ttagagaata agcaggtttg gcagaagtta
     6001 tcgctcagca agacttcata tcatacagaa ttacttcttg ctgaacgatt tatggagggg
     6061 gcattagccg gtagtgaaat tcgtttgctc ttgtagcttc tcaacggcta atttaattag
     6121 ttgattttgg ggaatattta actgttgggc aagttgctcg atttgtgcga ttgtgctttc
     6181 gtgcagttta aaggctttaa gtttaattcc ccgttttgcg ttgctacggt ttacaatttc
     6241 ggttcttgac agtgccatca taaatcctta atataggttt tgaagagtag ggagatttct
     6301 ccccctactt agtttcattc aattagtatg ctggcaggct aatcactaag agaatgataa
     6361 ctaggataat gcggtaaagc atttgttatc cctccaaaag tcggtgggat taaaggtcgc
     6421 caccggctcg tttccagcac tattactgaa aacaagttta ttatatgttg gataaccaat
     6481 atattcaagc aaaatatcgt taaaaagccc atggttttgt aaattatggg cttttttgca
     6541 tttaaatgat taaaaagtgt tgcaaagttc ggacttaatc tatattattt atggtaagtt
     6601 gcggttcatt gcataggtgg tgaacttaaa agaattt
//
LOCUS       DANLUT010000132         6498 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLUT010000132 DANLUT010000000
VERSION     DANLUT010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(224..2140)
                     /gene="iolC"
                     /locus_tag="PXB38_002013"
     CDS             complement(224..2140)
                     /gene="iolC"
                     /locus_tag="PXB38_002013"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL5354292.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2408..4342
                     /gene="iolD"
                     /locus_tag="PXB38_002014"
     CDS             2408..4342
                     /gene="iolD"
                     /locus_tag="PXB38_002014"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL5354293.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            4469..5365
                     /gene="iolE"
                     /locus_tag="PXB38_002015"
     CDS             4469..5365
                     /gene="iolE"
                     /locus_tag="PXB38_002015"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL5354294.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVVAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            5367..6377
                     /gene="iolG"
                     /locus_tag="PXB38_002016"
     CDS             5367..6377
                     /gene="iolG"
                     /locus_tag="PXB38_002016"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL5354295.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
BASE COUNT         1847 a         1459 c         1519 g         1673 t
ORIGIN      
        1 aaacaatttg tttcgataaa aagggggggg tttatgtatg aaatgtgaac ttcatcacac
       61 ttattttgtg ataagcagat tgaggaatgc ccgatattcg cttttttagg aaaattcggg
      121 catttttacg gctagcaagc ggtctgttta gccggatttt ttgcaaaaca aaaccccttg
      181 cttaatatca taagctaagg ggttttcact taaagcaata tgattaacgt tgttgccaga
      241 gatcgattaa agtgcgatat ttctccgata ccgcagaaat caaggtattg tcgtccaatt
      301 caccggcaag ccatttttcg gacggttcac cgaaaatggt gcggccgact gcaaagcctt
      361 tcactttctc acagcctttt gcctgttcaa aggtgtcttt aaacacctct aacggggcat
      421 ctaaacctaa aattaaaata ccacgacagt ccggatcgtt tgcctcaatg gtggcggaaa
      481 tcgcttgcca ttgtgcgcga gaaacatccg gcaatttcca ccattccggc ttaatgccaa
      541 gttggtagaa atgtgctatc gcttggttat agaaagcctc actctgtggc atatcagcag
      601 gcagaataat ttccaacaat agctcgtgac cggtacggca acaggcttga tacacctctt
      661 ttaacttgcg atcttggcgg gcttttaaac cgctttcatc attcgggtgg taaaatgcca
      721 agcatttgat gacgtgatcg cgtgggaatg atgctagctg agagcctaaa tctccatact
      781 ctaattccag cgggcgggaa gacggctctt caatcgggcg ggcaatccag taatctttgc
      841 cggtaatctc attaagtaca tcttgcccga aagtggtatc ggctaggatc cctgcttgat
      901 tttgtggtaa gccggattga gttgcggttt gttccatcgc ttttaatagc agctgtttca
      961 gtttcggtat gcgagcaaga tctgcaccga ctttatttgc catatccacc aactgtttgc
     1021 ggtgatcaaa agcaaaaata cagagatttt cccactgttt tttgcgggtg gtgacacggt
     1081 gtaagtggtt taaacgctca tctaaatccg gacgtggtac actctctgca cgggttaaat
     1141 aatcgtcaag ttcacgtttg gtcggcattg ccggtgaaca gccgtgacga gataccacta
     1201 acgctccgca cgcattggca tagtggcacg cttgttccca accttcgtta tttaagtagc
     1261 cacgcagtaa gcccgacata aaagcatcgc ctgcacccag cacattcagc acttctacac
     1321 gcacgccgta cacattcaag ccaccgtcta aatcattcgg cagctcgcct tcaaatactg
     1381 aacaccctaa tgccccacgt ttgcacacta atacggcatt agagacttta cgcacatttt
     1441 tgagtgcagt gagagtatcg gtcgaaccgc ctgcgatatg aaattcttcc tctgtgccga
     1501 caatcagatc gaaatggtgc aatacttctt gtagcgattt ggtgacttcg gcactgtcta
     1561 tataacgggt ttcgccatca ccgagtgagg ttaatcccca taacacaggg cgataatcaa
     1621 tatctaacgc tcgttttacc tcatttctac ccgcatattc gagtgcggtc agcacagctt
     1681 cacgggtttt agggtttgac aggtgcgtgc cggtaattgc taagcaacgg ctggaagcaa
     1741 tataggcttc gctaaaatcg tctttggtga ttgccatatc cgcacagtta tcacgataga
     1801 aaatcagcgg aaaagtctct ttatctttaa tgccgagaat aaccagtgca gttaagcgtt
     1861 ctttatcggt aattaaatgg ctggtgtcca cgcctacgct ttgtagctct tcacgtagaa
     1921 aacgccccat atgttcgtca ccgacccttg ccagcattga agaacgtaaa ccttgcaccg
     1981 ccgtaccgta agccacattg cctgacgagc cgccgaggta ttttgaaaat gtggtcatct
     2041 cttccaaacg ggaaccgatt tgttgcccat aaaagtccac cgccacacgc cctaaacaga
     2101 taagatccaa tggacgatct tgatgattaa ctgttgccat aaccgctcct tacaacaagt
     2161 aaatttgaat acacactata catcatacaa aaatgaaatt tttatttcaa atttattcta
     2221 tttaaattat catttctgtg atctagctct cactttgaaa aataaggcaa taacttcgca
     2281 gaaatgagaa ctggatcaca tctttttttc gatttccttg ctattataaa tgaaataaat
     2341 ttttcatttg taaaaatcag tagaaaaccg accgcttgca aaagcgatgt aagccagagg
     2401 aggctttatg cagactactc gtttaacggt tgcacaggcg ttagtgcaat ttttggataa
     2461 tcaatattta gacgtggacg gcaaagagat taaattcgtt cacggtgttg ccgctatttt
     2521 cggccacggc aatgtgctgg gaataggtca ggcgcttgct caaaatgccg gtggtttaac
     2581 gctctaccaa ggcagaaatg agcaaggtat ggcacatttg gcgatgggct ttgctaagca
     2641 aaatctgcgt caaagaatta ttgcctgtac ttcctcggtc gggccggggg cggcaaatat
     2701 ggttacggct gcggcaacgg caacagcgaa ccgtattcct cttcttttat taccgggcga
     2761 tgtgtttgcg acccgccagc cggatccggt actgcaacaa atcgaacaac cttacgattt
     2821 aagcattagc actaacgatg cgttccgtgc cgtcagtaaa tattgggata gagtgcaacg
     2881 ccctgagcag ttaatgagtg cttgtatcaa tgcgtttcgt gtgctgaccg accctgctga
     2941 aaccggtgct gtcaccattg ctctgccgca agatgtacaa gcggagagtt ttgatttccc
     3001 gaacagcttc ctgcaaaaac gagtgcatcg cttagagcgt acaccgccga caacagcgat
     3061 gattaagcaa gcggtaacat taattcaaac caagaaaaaa ccgctgattg tctgcggtgg
     3121 cggtgttcgc tactcgcaag cgggtcaaat tctgcaaaaa tttgctaaac agttcggcat
     3181 tccatttgct gaaacccaag cgggtaaaag tgcggtggtg tccgatcacg cattgaatgt
     3241 aggcggagtg ggagaaaccg gttgtttagc ggcaaaccgt ctggcaaaag aagcggattt
     3301 agtgattggc attggtacac gctacaccga cttcacgact tcttccaaat ggattttcca
     3361 aaacccaaac gtgcagtttt tgaacattaa tgtggcacgt tttgatgcgt acaaattaga
     3421 cggcgtgcaa ctggttgccg atgcaaaaac tgcattagag gcgttaagcc aagccattcc
     3481 tactgattat caagctcaat gggagaatga aatttcacag gcgaaagcgg attttgctga
     3541 tgaaattcaa cgcctgcgcg ctgtgcaata tcaccctgat ttcacccctg aaattaacga
     3601 taatcttgat cataaagcgg ttcacaatga atttattcag ctcaccggtt cccagctcac
     3661 ccaaacccaa gtgctgggta ttgtgaatga aaccattgat aacaatgcga ttattgttgc
     3721 cgccgccgga agtttgccgg gtgatttaca acgcacttgg ttaagtaaag gtgaagagac
     3781 ttaccacctt gaatatggct actcctgtat gggctatgaa gtgagtgcgg cagtcggcgt
     3841 gaaaattgcc cgccccgaac aagaggtcta tgccttgctg ggggacggct cttacttaat
     3901 ggcacacacc gaattagtga cctcaattca agagggcaaa aaaatcaacg tggtgctgtt
     3961 cgacaatatg gcaaacggct gtatcaacaa cctgcaaatc ggcaacggta tggacagttt
     4021 cggtacggaa ttccgcttcc gcaatggcga aactaaccaa ctcaacggcg gtttagtgcc
     4081 gattgatttt gccaaaaacg ccgaagcata cggctgcaaa acctatcggg taactaacga
     4141 agccgaattg cgtgccgccc ttgatgatgc gaaaaaacag accgtttcta ccttaatcga
     4201 tattaaagtg ttgccgaaaa caatggctca cggctatggc tgctggtggc acgttggtgt
     4261 cgcggaagtg tcagagagcg agcgtattca acaagcccgc caacgctccg aagagcagtt
     4321 agctaaggct cggaagtatt agttaaaaaa acaactcccc actttgagct acgaggggag
     4381 aatatcaagc ggtcaaattt gcaaaatttt tgataaaaat aaccgcttgc atccaaattt
     4441 atctctataa atcaaacgag gtttctctat gaaagctgaa aacattcaat taggcattgc
     4501 cccaatcggt tggacgaacg atgacctgcc ggaactggga gcggaaaaca ctttcgagca
     4561 gtgtgtgagt gagatggcac ttgccggcta cacgggctgt gaagtgggta ataaatatcc
     4621 gcgtgatgtt gccgtgttaa aacacaaact ggacgtgcgt ggcattcaaa tctgtaatgc
     4681 gtggttcagc accttctttg tggacggtaa acgggaagag accattgccg agttcatcaa
     4741 acatcgtgat ttcttgcatg caatgggggc aaaagtgatc ggctgttccg aacagagccg
     4801 tagtattcaa ggcacaacca aatctgtgtt caaagaaaaa ccgattttca acgatgaaga
     4861 ttggaaacgt atggcagaag gctataacga attggcgaaa cttgccgccg aaaaaggaat
     4921 gaaagtctgc ctgcatcacc atatgggaac cggtattcaa acacccgaag aggtcgatcg
     4981 ctatatggca gaagtgaatg acgatgtcta tctgttgttc gattcagggc atttgtacta
     5041 ttccgaaggc tgccaaaaag cgatgctcgg cgtactggaa aaatatatcg accgtattat
     5101 ccacgttcac ttaaaagatg tgcgtgatga agtcgtggcg gaagtaaaag caaaagattt
     5161 aagcttttta gaaggcgtga aaaaaggcac ctttactgta ccgggcgatg gtgtcattga
     5221 tttccgtccg attttcgata ttttagaaaa acacgactac aaaggctgga tggttgtaga
     5281 agccgaacaa gatccggcac ttgccaaccc gtttgaatac gccctcaaag gcagaaaata
     5341 tatccgtgaa accgcaggag tttaatatgt taaaagtagg tattattggt gcaggccgta
     5401 ttggacgtgt gcattctgaa agtattagca aatatgtcaa aggtgctgaa atcaaagcaa
     5461 tctctgatgt aaaaattacc gaagaattga ccgcttgggc aaaatcgatg ggtattccgg
     5521 aagtttatga tgactataaa aaaatcctgc aagatccgga aattgatgcg gtattggtct
     5581 gctcttccac caacactcac gctccgattt cgattgaggc agcacaggct ggcaaacacg
     5641 ttttctgtga aaaaccggta gatgcagacc cagctaaaat ccgtgaagta ttgagtgcag
     5701 tcgaaaaagc cggtgtaaaa ttccaagtgg gctttaaccg ccgcttcgac cacaacttca
     5761 aggcgattaa agaccgtgtg gcggcaggcg acatcggcga accgcacgtt atccgagtaa
     5821 cctctcgtga tccggaagcc ccgccaatcg aatatgtgaa agtctccggc ggaatgttct
     5881 ttgatatgac cattcacgac ttcgatatga ttcgttattt atccggcagc gaagtggaag
     5941 aagtgtttgc agtcggcacc gtattagtaa accctgaaat cggcaaagcg ggcgatattg
     6001 atactgccgt tatcacgttg aaactgaaaa acggagcaat cggcgtaatc gacaacagtc
     6061 gcaaagctgc ctacggctac gaccaacgtg cggaagtgtt cggctcgaaa ggggcaatcc
     6121 atatcactaa tgataccggc tcaactgccg tattctcagg tgaaaacggc gtggtggcgg
     6181 aaaaaccaaa atacttcttc ttagaacgtt atatgcaatc tttcgccgat gaaatcagct
     6241 gtttcgtaga ttctgtggta aacgacaaac caacgttagt aaacggcaat gacggcttac
     6301 aaccggtact tattgcctta gctgcgaaaa aatcactgga agaaaaccga ccagtgaaat
     6361 tgagtgaagt ggcgtaattg atcataaata caagcggtcg gttttactcg ctacactcgc
     6421 acttcgtgcc atcggcatag ccgatgttca aacgcaagca ttttgcagaa aaatttgtaa
     6481 aactgaccgt ttgagttt
//
LOCUS       DANLUT010000133         6438 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLUT010000133 DANLUT010000000
VERSION     DANLUT010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6438
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            107..2476
                     /gene="malP"
                     /locus_tag="PXB38_002017"
     CDS             107..2476
                     /gene="malP"
                     /locus_tag="PXB38_002017"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL5354296.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            2558..4636
                     /gene="malQ"
                     /locus_tag="PXB38_002018"
     CDS             2558..4636
                     /gene="malQ"
                     /locus_tag="PXB38_002018"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5354297.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSDILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(4701..6362)
                     /locus_tag="PXB38_002019"
     CDS             complement(4701..6362)
                     /locus_tag="PXB38_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL5354298.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRGKDQLSTLNVRLTNPNIHGL
                     ALKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         2063 a         1399 c         1205 g         1771 t
ORIGIN      
        1 ctcactactt ccttataatc ataccataca agatgattat tgggatgatt tgattttatt
       61 tggattttac ataatagcga cattcatctt taaccggggg tttcctatga catttaattc
      121 tattgtagaa aaatactgtc gctactttga tgtgacagat ccaaaacact ttaccttaca
      181 gcagtggtat caagttgttg ctgaaggttc ccttgagcta atttatagcc agcctgcaac
      241 caaaccgaca gaatcacgcc acgtgaacta cctctcaatg gagttcttaa tcggtcggtt
      301 aaccggcaat aatttaatga atttaggtta ttacgaacaa attcgtgact atcttaaaca
      361 atatcaagtt gaattagtag atgttttaga acaagagcgt gatccggcac tgggtaatgg
      421 cggattaggt cgtcttgctg cctgcttttt agattcgatg gcaactgtcg gacaaaatgc
      481 aaccggctat gggcttcatt atcaatatgg tctgtttaaa caaagcttca aagagggaat
      541 gcagaaagaa gcagcggata cttgggctcg tgacagctac ccgtggcatc gttttaatcc
      601 gtctaaaacc cgccatatcg ggtttggtgg aaaaatcaaa catatccaag ccgatcaata
      661 tgaatggcag cctaaattga ccattcaagg caaagccttt gacttgccga ttgtaggtta
      721 taaaaacaac atcattcaac cattacgttt atggcaagca gatagtgacc aatcttttga
      781 ttttgatgcc tttaatgagg gtaaattttt aagtgccgat aaaacgattg tcaatgcagc
      841 cgcactaact caagtgctgt atccaaacga caaccatcaa gccggacaaa aattacgctt
      901 aatgcagcaa tacttccatt gtgcctgctc ggttgccgat attttagatc gtcacattag
      961 cgaaggttat tcgttagaag atttagcaaa acgccaagtt attcaactca atgataccca
     1021 tccaacgctc gctatacctg aattgatgcg tgtactgtta gatgaacatc aattcacttg
     1081 ggagcaggct tgggatattt gcagcaatac ctttgcttac actaaccata ccttattacc
     1141 tgaagcactt gaacaatggg atcaacgcct atttaagcag ctattacctc gccattatca
     1201 aattgtggaa aaaatcaatg atattttcca cgacaaagta caggcagaat ttggtgatga
     1261 tgcaaaaatt tgggaaaaat tagccgtgct atttgattac cgtgtgcgta tggcaaacct
     1321 ctgcgttgtc acctgcttcc gtgtaaacgg cgttgcggaa attcactccg atctcttagt
     1381 gaccgatcta ttcccggaat accacaaatt attcccaaca aaattctgca atgttactaa
     1441 cggcatcaca cctcgccgct ggattcgaca agctaatcca caattaagtg atttattgga
     1501 tcgtacctta aaacaagatt ggacacacaa tctggaatta ttaaaaggcg ttgaacaata
     1561 tgcggatgac accggtttcc gtgaagaata tcaacgcatt aaacgcaata acaaagtggt
     1621 tttagccaat gaaatccata aaacattagg gttaaatgtc aatcctaatg cgatttttga
     1681 tgtgcaaatt aagcgtttcc acgaatataa acgccaacat ttgaatttgt taaacattat
     1741 tgcgacctat caatcgctaa aagctaaccc gaaccaagac tacacaccac gtctattcct
     1801 attctcgggc aaagctgcac cgggttatta tttagcaaaa aatattattc acgctattaa
     1861 taatgtggca gatattatta ataacgacaa gcaggtaaat gatcgactac aagtggcatt
     1921 cttaccggat tatcgagtca gtcttgcgga aaaaattatt ccagcagctg atgtatcaga
     1981 acagatttca atggcaggta aagaagcctc cggtaccggt aatatgaaat tggcactcaa
     2041 cggcgcatta accttaggta cgctagacgg tgccaatgtt gaaattgctg atatggtcgg
     2101 tgaggagaat gtctttatct tcggtcacac cgtagaaagc gtgagggaat tattagcaaa
     2161 aggctaccaa ccgaaagcct actataacca agatccgatt ctgaaaaatg cggttgattt
     2221 cttagccaca ggaaaagcct ctaacggaga taaagaggca ttcaagctga tgttagatag
     2281 cctgttggaa cgagatcctt tcctagtctt tgccgacttt gatagctatc gccaagcaca
     2341 agagaaaatt ggtgtagcct atttagatca agaaacttgg ctgcgtagtg caattttaaa
     2401 tactgctcgt ttgggtgcat ttagctcaga ccgctcaatt aaagattatc aacaacgtat
     2461 ttggttgaat agataataaa ttcgggcgac ttctacaata aagaaagtcg cctattttct
     2521 gctgtatttc atatgtattt atatatggag agaaatgatg aaaataactg ccaaacaata
     2581 ttatcgggct ggaattatgc cctatttttt cgatgagcgt ggtgtaaaaa aaacagcatc
     2641 tgaaaaaata aaacactcgt tattcaaagc ctttaacggc aatactcaag caagagaaac
     2701 acctatccct acggtcaaca ttttttacca gcaccaaccc tgttttttac cttttcattt
     2761 agcggataaa aaacatccgt taaccggtac ttggcagcta caactagaaa attcaaacca
     2821 aattatttcc ggcaaaatta aagcaagggg aattacatta cctcaagatt tgcccttagg
     2881 ttatcaccaa ttacagctaa aaacggtaga taaaaccttt aattgcacca ttattatcgc
     2941 tccggaacgc tgctaccaac cacaagccgt cattgaacaa aaaagattgt ggggaacctt
     3001 cctacaacta tacaccttaa aatcagccca caactggggg attggcgatt ttggcgattt
     3061 aaaagacttc attcaacaga ttgcccctta ccaagcagat tttatcggct tgaacccgat
     3121 tcactcactt tttccggcaa acccgaattc tgccagccca tacagtccat cctctcgccg
     3181 atggctgaat attgcttaca ttgatatcaa tcagctagcg gaatttcaac aaagtgatga
     3241 agcacaaact tggtttcatt ctgctgaaat ccaacaacaa ttatcagaat tacgcactca
     3301 ggattggttg aattacgagc aaatcattcc gttgaaattg aaagggctac gctttgcttt
     3361 cgcaaaattt cagcaaaata tgaccgcttg cgctgcccct gcttttatcg aatttgtaca
     3421 aaaaggtggt gaaagcttac aagttcaagc cacatttgat gcccttcatc agcatctatc
     3481 ggcacaattt gccgaccaat ggggctggga tttctgggag aaagcctacc aagactacca
     3541 ctccgcagcc gtgcagcaat ttagagaaac gcataaaacc gacatagaat tttacctttg
     3601 gttacaattc gttgccgatc aacagctagc agaatgtgat gctatctgcc gtcagcaaaa
     3661 tatgcgtatt ggtatgtatc gcgatctcgc cgttggcgtc agcccgaatg gtgcagaaac
     3721 gtggaatgac aaacaacttt attgcttaaa tgcctctgtc ggcgctccgc ctgatgtatt
     3781 aggtccgcaa ggacaaaact ggggcttaac cccaatgaat ccgcatgtat taaagcaaca
     3841 agcctaccgt ccgtttattg agttagtcag agctaatatg agtcattgcg gtgcattacg
     3901 ccttgaccat attatgtctt tactccgttt atggtggatc cccaaaggcg atagtgcggt
     3961 taatggtgct tatattcgtt atccagttga tgatttaatc gcaattttgg cacttgaaag
     4021 ccaacgccac caatgcctaa ttatcggtga agatttaggt actgtgccaa aagaaattgt
     4081 gagcaagctc aaaaatgcgg gaattttatc ttacaaaatt ttctattttg aatttgatga
     4141 acaagggaag agtcgagact tacagcatta cccttaccaa gcaatgacca cattaagcac
     4201 ccacgattta ccgactatca atggttattg gcgtggctat gattttgaat taggcgaaaa
     4261 attcggcgtc tatcctaatt cggatatttt ggcaatcctt aagcaagatc gagtcaatgc
     4321 caaagccaaa atcttacaac gcttacaaga acataacgta gagatcgccc ctgaaattag
     4381 cgagcaactt aattctccgg tgaataccgc atttattcac tgtttacaaa cctatgttgc
     4441 aaatgtaagc agcggattat tcggcttcca acccgaagac tggttgggta tgactgagcc
     4501 ggttaacatt ccgggaacca gtacacaata tgcaaactgg cgacgtcggc ttagtgttaa
     4561 cctcgaggag atcttcacag ataaagatat tcaagcctta ttaaaagaag ttaatttaat
     4621 ccgtaaaaat caataaaagt tagataagaa aaaaggcgac tttccgtcgc cttttgggct
     4681 tatatgcttg atgtctatct ttatccacct gaaacccaca acataatcgc tagcacttga
     4741 ggtagcataa tacgcaaaaa cattactagt gggtaaacag ttgcatagga taacgctgca
     4801 gcgccatttc cctctttaat ttcattggca aaagcaagcg ctggaggatc agtcattgag
     4861 ccggcaagta atccacaaat cgttaaatag tttactttgt tatacattct ggcaatcaat
     4921 cctgctatca tcaatggaac aaaagtaata atcgccccat agcatatcca ctcaacgccc
     4981 tcactgctta atagcgtttc gagaaatcta ccgccagatt ttaaaccaac taccgctaaa
     5041 aacagtacaa taccgatttc acgcaatgca agattggcac ttggtggcat aaaccagtag
     5101 agtttactga aactaccaat tcttgcaaga ataagagcaa ccaccagtgg tccaccagcc
     5161 aagcccagct ttaacgcaac agggaaaccc ggtaaataaa tcggtacaga accaagtaat
     5221 actcccaaac cgatcccgat aaatattggc aacatttgga cttgttgcaa ctttgagtgc
     5281 gcattgccga taatcgtcat taccatttca atatcagctt gccgccctac taaattgaga
     5341 acatcaccaa attgtaacgt catatcacct gttggtacta attctacacc ggctcgattt
     5401 aaacgagaaa tgacaacatc gtatttgcct ttaagcatta gctgacgaat ttgtttcccg
     5461 aagacttttt cattcgtcac tacagcacgt tcagaacggt aaatcgtgcc tttggttgag
     5521 acagatacat ctactgcctc acctaaaata atctgcattt ttcgtaatga ggattcttca
     5581 cctactaagt gtaaaatatc tcctatctgt agaatcgtat ctacacgtgg aatagaaagc
     5641 tcattccccc gttttaagcg tgaataagct acttcgtgca aattaaaatc aggaatttgt
     5701 ttcaacgcta aaccgtgaat atttggatta gtcagacgga catttaaggt actaagttga
     5761 tctttacctc tattttgctg tttgttaaaa gcctctgctt ccgcctcaat attgattcga
     5821 aataaaatcc gaatcagcca cattgaaagt agaattccga taatgccgaa cgggtaagca
     5881 atcgcataac tcattcccat aatttcagtt acactctcag cgcttaactc agccaatacc
     5941 tgttgacctg ctcctaaaga aggggtattg gttacagccc cggagaaaat gcctaaaatc
     6001 acaggcaaag gaacattgaa gaatttatga ataagaataa ctaaaatacc gctaatcagt
     6061 acaatcagta ccgcaaaacc attgagtttt aagccagaat gttttagtga ggcaaagaat
     6121 ccaggtccta cttgaattcc aattgaataa acaaataaaa tcagcccgaa ctcttgaata
     6181 aaatgaagcg tatgggcatc gagcttcaca tcgaattgcg ccataaaatg ggagacaaac
     6241 agcccaccaa ataacactcc ccctatacct agccccacgc ctctgatttt aatatggcca
     6301 atccataagc ctagaacggc cactaaagat aataaactga cagtaagtgc aatttcgctc
     6361 attacagcct ctctttaata tgaaatacct caaaaatggt atccaattct accaaatctc
     6421 aaaaacgaaa aatgagat
//
LOCUS       DANLUT010000134         6407 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLUT010000134 DANLUT010000000
VERSION     DANLUT010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6407
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            133..2055
                     /locus_tag="PXB38_002020"
     CDS             133..2055
                     /locus_tag="PXB38_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HDL5354299.1"
                     /translation="MKLIEIENLNKYFGLGQTQAHILKNINLSIERGDFVAIIGASGS
                     GKSTLMNIIGCLDTASSGICRIDGKETQTMSADELSDLRQRKLGFIFQRYNLLSALNA
                     NENVALPAIYAGMDSSSRKKRADTLLTKLGLSDKTQHKPNELSGGQQQRVSIARALMN
                     GGEIILADEPTGALDSKSGETVLEILRDLHHEGHTIIMVTHDPNIAAQASRVVEIKDG
                     QIIRDEHQRADVQETALNKTTTQKTRFWAQLFESFKMATSAIMAHKMRAILTMLGIII
                     GITSVISVVALGRGSQQQILSNINNLGTNTMDIMNGTGFGDRRANLTKNLTISDALML
                     GRQSYVESTTPSSNVSATLIYGNTAVTGSVRGVGEQFIDVKGLKLISGRFFSAEEVKN
                     VAQIIVIDPNTQKDLGLTEPVEGKTILVDKKPLQIIGVAQQSNNMNQSSLTLWAPYTT
                     IMQRISGAKQIDSLTVKIKDDIESQTAEKSITELLVAKHGKKDFFIMNSDTIKQTITS
                     TTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGVRMAIGAKQRNILQQFLI
                     EAVVICLIGGVIGILLASAIIWAFNTLGSNFKMMLSPESVVIAVLCSTLIGVVFGYIP
                     ARNASQLNPITALAQE"
     gene            2138..2908
                     /locus_tag="PXB38_002021"
     CDS             2138..2908
                     /locus_tag="PXB38_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL5354300.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIERNADAILVHHGYFWKSETPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHPELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(2989..4119)
                     /gene="nrdB"
                     /locus_tag="PXB38_002022"
     CDS             complement(2989..4119)
                     /gene="nrdB"
                     /locus_tag="PXB38_002022"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5354301.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMTYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(4146..6401)
                     /gene="nrdA"
                     /locus_tag="PXB38_002023"
     CDS             complement(4146..6401)
                     /gene="nrdA"
                     /locus_tag="PXB38_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005587493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5354302.1"
                     /translation="MVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQF
                     YEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHLYEHVK
                     KLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEI
                     YESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFS
                     SCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPF
                     YKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQI
                     NKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRKVKAVE
                     LFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDE
                     QGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRAL
                     GVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQT
                     TYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQIS
                     NATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLVGIMQK
                     FVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQDDL
                     DEGCAGGACKI"
BASE COUNT         2004 a         1339 c         1228 g         1836 t
ORIGIN      
        1 agcaccaagg tactattcat ttagataaaa gtaatatggg aggattaaaa atcgaactga
       61 aacttcccct ttggcgttcc taaggcaaaa agcatatcgt ttgtaaaaaa cagtcgaaaa
      121 ataaccgctt gtatgaaatt aattgaaata gaaaatctca ataaatactt tggcttggga
      181 caaacccaag cccatattct aaaaaatatc aatctcagta ttgaacgggg tgattttgtc
      241 gcaattatag gtgcttcagg ttctggcaaa tctaccttaa tgaacattat tggctgttta
      301 gatactgcaa gctcaggtat ttgccgtatt gatggcaaag agacccaaac aatgtctgca
      361 gatgaactgt ctgatttacg ccaacgtaaa ctggggttta ttttccaacg ctataatctc
      421 ctttcagctt tgaatgcaaa cgaaaatgtt gccctacctg caatttacgc cggaatggat
      481 agctcatcac gcaaaaaacg agctgatacg ttattaacaa agttaggatt atcagataaa
      541 acccaacata agccgaatga gttatctggg gggcaacagc aacgagtcag cattgcacga
      601 gccttaatga acggcggtga aatcattctt gcagacgagc ctaccggtgc attagattcc
      661 aaaagtggcg aaactgtatt ggaaatcttg cgagatctac accacgaagg tcataccatt
      721 attatggtga cacacgaccc aaacattgcc gctcaagcca gccgtgtagt tgaaattaaa
      781 gatggacaaa tcattcgaga tgaacaccaa cgtgctgatg ttcaggaaac agctctcaat
      841 aaaacgacaa cacaaaaaac tcgcttttgg gctcaactgt ttgaatcctt caaaatggca
      901 accagtgcaa ttatggcaca taaaatgcgg gcaatcctca cgatgctggg cattattatt
      961 ggcattacct ctgtgatttc cgtagtcgct ctcggtcgag gctcgcaaca acaaatcctt
     1021 tctaatatca acaacctagg cacaaatacg atggatatta tgaatggaac cggctttggc
     1081 gatagaagag ccaatctgac taagaattta accatcagtg atgccttaat gttggggcgg
     1141 caaagctatg tggaaagcac tactccttca agcaatgtca gtgccacatt gatttatggt
     1201 aataccgcag taaccggttc agtacgaggt gttggagagc aatttattga tgtgaaaggg
     1261 ttaaagctga tttcagggcg ttttttcagt gccgaggaag taaaaaatgt ggcacagatt
     1321 attgtaattg accctaacac tcaaaaagat ttggggctga cagagcctgt tgaaggtaaa
     1381 acgattctag tggataaaaa accgttacag attattggtg tggcacaaca gtcaaataat
     1441 atgaaccaaa gtagccttac cctgtgggcg ccttatacca ctattatgca acgcatttca
     1501 ggtgcaaaac agatagattc actcacggtt aaaattaaag atgatattga aagccaaact
     1561 gccgaaaaaa gcattaccga attgttggta gctaaacacg gcaaaaaaga tttctttatt
     1621 atgaatagtg atacgatcaa acaaaccatt accagtacca ccaatacaat gaccttgctg
     1681 atttcctcta tcgcccttat ttcgctgatt gtcggcggta tcggggtaat gaatattatg
     1741 ttggtttccg tcaccgagcg aacccgagaa attggtgtcc gaatggcgat tggtgcaaaa
     1801 caacgcaata ttttgcaaca atttttaatt gaagcggtgg ttatttgcct gattggtggt
     1861 gtaataggca ttttgctcgc aagtgctatt atttgggcat ttaatacctt aggctcgaat
     1921 tttaaaatga tgctttcacc tgaatcggtt gtgattgccg tactctgctc tactcttatc
     1981 ggtgtggtat ttggctacat tccggcaaga aacgcctccc aattaaaccc aattactgct
     2041 ctggcacaag agtaaatgcg acaactatct gctacactgt agggcaaaaa attttttgcc
     2101 cttacatcca ttattatgcc aagtttaagg agataaaatg acaataacca atactgaact
     2161 agaacaaata ctgaacacca aacttaacag ctccgccatt aacgactatg ccccaaatgg
     2221 cttgcaagtt gaagggaaaa gagaaatcaa aaaaatcatt accggtgtga ctgccacact
     2281 tcccctgatt gaaaaagcga ttgagagaaa cgccgatgca attttagtcc accacggtta
     2341 tttttggaaa agcgaaaccc catgcattcg aggaatgaaa ggtaaacgca ttaaacagct
     2401 tttagtgaat gacatcaatc tctttggtta tcacctacca ctggatattc accccgaact
     2461 aggtaacaac gcccagcttg ctaagcattt aggcgtaaaa aatctacaag gtttagaaga
     2521 cagacctaat tcaattccaa tgtacggtga attagaaaat ccgatttccg ccaatgaact
     2581 aaaacaaaaa cttgaaaaaa cgttacaacg caccgttatt ttatgtgatg aatttgttca
     2641 tagcccacaa aaaatgatta aaacaatcgg gatttgctcc ggcggaggac aaggctatat
     2701 tgatttagcc tttgaaaaag gctgtgatgc ctttattagc ggcgaaattt ccgaacagac
     2761 cacccactct gcccgtgaac aaggaatcta ttattttgct tgtggtcatc acgccacgga
     2821 acgagatggc gtaaaagcct taggtgaatg gttagccgtt gaatatggtt tagatgttga
     2881 atttattgat attgataacc ctgcataaaa aatacaagcg gttgaatttc ctgaaaattt
     2941 tgcaatttgc aaaaaatcac taaaaatcaa ccgcttgtat atcatagtct aaagttcaaa
     3001 atcgccaaaa tcacggctat ctactttagc atcaatctgg ccaaccaaat aagaactgac
     3061 ttccacttct tgtggtgcta cctgtacatt atcggaaacc aaccacgcat tgatccacgg
     3121 aatggggttg gaacgtgcct taaatggtaa tggtagtcca acagcctgca tccgaatatt
     3181 agtgatatat tcaatatatt gcaccaaaat atcccgattt agccctatca tcgaaccgtc
     3241 tttaaacagg tattccgccc acgctttttc ttgttcagct gcacttaaaa aaagctcgta
     3301 ggcctcttgg cgacattcac gtgcaatttc tgccatttca ggatcatcat tgccataggt
     3361 cataatattc aatatatgct gagtgccggt aagatgtaat gcttcatcac gtgcaataaa
     3421 tttgatgatt ttggcatttc cttccataag ctgccgttcc gcaaaggcaa atgagcaagc
     3481 aaaagagaca taaaaacgaa ttgcttcaag cgcattcaca ctcatcatac agagataaag
     3541 ttgtcttttt agactacgca aactgacctc acaggttttt ccatcaacct gataactgcc
     3601 ttcaccatac aaactataga gttggctgtc acgaatcaaa tcatcataat aggcggaaat
     3661 atctttggca cgcttaataa tttcttcgtt tgtgacaata tcatcaaata ctattgatgg
     3721 atcattgaca atattacgga tgatatgtgt gtaagaacga ctgtgaattg tttcgctaaa
     3781 tgtccaagtt tcaatccagg tttcaagctc ggggatagac actaatggca aaagcgccac
     3841 attcgggcta cgcccttgaa tggaatccaa caaggtttgg tattttaaat tgctgataaa
     3901 aatgtgcttt tcatgttcag gcagttgggc atagtcaatg cggtcttgcg acacatccac
     3961 ttcttccggt cgccagaaaa atgagagttg tttttcaatc agtttttcaa aaatttcgta
     4021 tttttgttga tcataacgcg ccacattcac attttgtcca aaaaacatgg gttcttttag
     4081 ttgatcattt ttatgttgtg aaaacgtagt atatgccatg ttattctcct ttatttctgt
     4141 tcttattaaa ttttacaagc accaccagca cagccttcat ctaagtcgtc ttgcacatct
     4201 tctgctccat cacgggtatt ttgatagtaa agggttttta acccgtattt atacgccgtt
     4261 aatagatctt ttaataatac tttcatcggt actttagctt ctgcaaagcg gtttgggtcg
     4321 taatttgtat tcgccgaaat cgcttggtca acaaatttct gcataatccc aaccaaatgc
     4381 aaatagccgt ccatattagg aatatcccaa agcagttcat agtatgcttt taaacgttca
     4441 tactccggca caacctgctt taaaataccg tcttttgatg ctttaacact aatatagcca
     4501 cgcggaggtt caattccatt ggtggcattc gaaatttgcg acgaagtctc cgatggcatt
     4561 aaggcagtta aagtggaatt gcgcaagcca aattgcagaa tatcctgacg tagttgttcc
     4621 caatcataat gaagcggttc ttgagttaat tcatcaattt cttttttata agtatcgata
     4681 gggagtaacc ctttggcata agtggtttga tcaaaataag cacacgcccc ttgttctttg
     4741 gctaaattca tcgatgcttt taataaataa tactgaatcg cttcaaaggt acggtgagtt
     4801 aaattattag cactgccatc ggaataacgc acttggtttt tagctaaata gtaagcatag
     4861 ttaatcacgc ctacacctaa tgcgcggcga tttaatgagc tgttacgtgc agctaatacc
     4921 ggataatctt gataatctaa tagggcatct agcgcacgaa ccactaaatc agccaattct
     4981 tctaactcat ctaaattgct gagtgtgcct aaattaaatg ccgataatgt acataatgcg
     5041 atttcccctt gttcatcata aaaatgtgcc agtggcttag ttggcaaagc aatttctaag
     5101 cagaggttcg attggcgtat cggtgcgaca cgaggattaa atgggctatg agtattacaa
     5161 tgatcgacat tctgaatata aattcgccct gttgaagccc gctcttgcat cagtaatgaa
     5221 aacaattcta cagctttaac tttacgttgc cgaatgctcg gatcttgctc atattgcaaa
     5281 taaagttgct caaatttagc ttgatcagca aaaaacgctt catataaccc cggcacatct
     5341 gatggactaa ataaactaat ctcaccgcct ttaattaaac gttgatacat cattttatta
     5401 atctgtaccc cgtaatccat atggcgagca cggttttctt ccacaccacg gttatttttt
     5461 aataccatta agctttctgc ttccaaatgc caaatcggaa aatacacggt agccgctcca
     5521 ccgcgaacac caccttgaga gcaagacttt actgcagttt gaaaatgttt ataaaaggga
     5581 atacagccgg tatgaaatgc ttctccacca cgaatggggc tacctaatgc ccgaattgcg
     5641 ccggcattaa taccgatccc agcacgctgt gaaacatatt taacgattgc agccgaggtt
     5701 gcattgatgg aatctaagct atcatcacac tcaattaaca cacaggaact aaattgacga
     5761 gtaggtgtac gcactcctgc cataatcggt gttggcaaag aaattttgaa agtggaagtc
     5821 gcatcataaa aacggcgaat ataatctaag cggcttgctg ttggatactt agaaaataaa
     5881 caggcagcta cgagtaaata caagaattga gccgattcat aaatctctcc gctaacacga
     5941 ttctgcacta aatattttcc ttccaactgc tttactgctg cataggaaaa cgtcatatcc
     6001 cgccagtgat caataaatcc attcattgtc tcccattctt cgggcgtata gtcgctcagc
     6061 aagtctgcat catatttacc tagcgcaact aattttttaa cgtgctcata taaatgcggt
     6121 ggctcaaatt gtccataagc ttttttgcgt aagtggaaaa tcgccaagcg tgcggctaaa
     6181 tattgataat ctggcgtatc cttagtgatt agatcagctg cagccttgat aatagtttca
     6241 tgaatatctg aagtgcgaat accttcataa aattgaatgt gagaacggag ttctacttgt
     6301 gaaacagaaa cattctctaa cccttctgcc gcccaagtaa tcacacgatg aattttatct
     6361 agattgagtt gctcgcgcgt gccattacgc tttgttacca ttaaact
//
LOCUS       DANLUT010000135         6293 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLUT010000135 DANLUT010000000
VERSION     DANLUT010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6293
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            97..885
                     /locus_tag="PXB38_002024"
     CDS             97..885
                     /locus_tag="PXB38_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354303.1"
                     /translation="MLLKHNTMIQINSISYSVEQNRKLLSNISLNLSKGRLYGVIGHN
                     GSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKHIAYLPQRLPEAADFLVPE
                     LVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQPVNSLSGGEKQRVWLAMCL
                     AQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVIIIIHDINLASQFCDEIIA
                     LKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHKVAVL"
     gene            882..1349
                     /locus_tag="PXB38_002025"
                     /pseudo
     CDS             882..1349
                     /locus_tag="PXB38_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter substrate-binding protein"
     gene            1330..3294
                     /gene="fhuB"
                     /locus_tag="PXB38_002026"
     CDS             1330..3294
                     /gene="fhuB"
                     /locus_tag="PXB38_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HDL5354304.1"
                     /translation="MNKRWLNSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDL
                     LPINQAAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALM
                     IAVIFFPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIA
                     SLLTLFYFDFLFGVMVWGSGSLLQDGWATSIILAITVVVAFFIFVLLSRPLTILSLDD
                     EQARRLGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAGASLAHFAKIRHLLLRL
                     LIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLIFLVLRQRKAQFEAS
                     NTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISIDENLMSSYRLPRSL
                     SAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAILSFLLFPTLSSIGFLLF
                     GVLGSLAVLALIMWLSRKLQPSALMIAGVAIGALVSGLMAIIQLSGSPRLTAVISWLS
                     GSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSLHLGLEVKKVQMIVLL
                     LIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISALLGAMLMLIADWLGR
                     YLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            3322..5454
                     /locus_tag="PXB38_002027"
     CDS             3322..5454
                     /locus_tag="PXB38_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5354305.1"
                     /translation="MNTLSKAIKLALYGSSIGSISTAYAETVTHLNTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LVDRGRYSFSARGFGIDKVKVDGMDLKVNNQWTTGENTGNSVLYDRVEVVRGATGLTT
                     GAGDPSASVNLVRKRANSTSRYTILEAGIGRYADFNTMIDHSQALNNSGSVRGRFIAE
                     HKNGNTFIKNEKERYTTLYGNIEADLTDTTKLGLGVSYQKEKRDAALWGGLPAFYSDG
                     GETNWSRSKNASPEWAYWDNESVNYFADITQKLGEKWELALKGNYRVGKHNSELFYFS
                     GSSLNRQDGLGWSPWPGKFKNDNTQSNVQLDLTGSFSAWGLEHDAAIGIQYNRAHRNS
                     YAADNSTFDGAFDFNNWNGIYARPNWGSMSEKYYQNLKEFGVYVSTRLRLTDRLSMLL
                     GSRISSYRTEGTFYGSTQNFHANDVGTPYAGLTFDINPQNTVYVSYTDIFKPQSQVDI
                     NNKLLSPVTGETYEAGWKGSYFNDNLQTQISVFETRQDNLAQSAGINPNTLLAYYTAS
                     KGAKVRGFEVEASGNVTEKLKLNAGYTQWKGDDASGNPINTTQPRKQFKFFATYDMNR
                     LVQGLTVGAGVNWQSRIYTKHATYGEYGQKAYTLVNLMARYQFNDNFSAQLNIDNLFD
                     KKYRNALSFSQYSYGEPFYTRLNLRYEF"
     gene            5565..6209
                     /gene="adk"
                     /locus_tag="PXB38_002028"
     CDS             5565..6209
                     /gene="adk"
                     /locus_tag="PXB38_002028"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL5354306.1"
                     /translation="MKVILLGAPGAGKGTQAQFIVNKFGIPQISTGDMFRAAIKEGTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKEAGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNQPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLITYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
BASE COUNT         1844 a         1253 c         1281 g         1915 t
ORIGIN      
        1 tttataataa aaatatattt agcaccgttt tcataataga ttttcatcta ctcattttca
       61 ttttgattga tttggtgggg taatcccacc ttttttatgc tcttaaaaca caacactatg
      121 attcaaataa attccattag ctactctgtt gaacaaaacc gtaaactgct aagcaatatt
      181 tccctcaatt taagcaaggg gcgtttatat ggcgtaatag gccataacgg ctcgggtaaa
      241 tcaacgttaa tgcgtttact aagcggagat ataacgccta ccagcggttc aattttagtc
      301 gatggattac cacttcatca gctttctacc aaagaagcgg caaaacatat tgcctattta
      361 ccacaacgtt tacctgaagc ggcggatttc ttagtgccgg aactggttgc tttagggcga
      421 tttccatatc aaaaatggct acaaaaacca acagaatttg atgttcaaat tgttgagcaa
      481 gcaatggaaa gcacctccgt tactcagttt gctaaacagc ctgtaaatag tctatcaggc
      541 ggagaaaaac aacgagtttg gcttgctatg tgcttagccc aacaaacacc ctatttactg
      601 ctagatgagc cattggctgc ccttgatatt gtttatcaag ttgaagtaat gcagcttatt
      661 cgcaagctag tgaatgaaca aggtctaact gtcattatca ttattcacga tattaatctt
      721 gcctcccaat tttgtgatga aattattgcg ttaaagcaag gcgaactctg tattcaaggt
      781 tctgttgatg aaattatgca agaacagaaa ttacttgaga tcttcgggct aaaactgcac
      841 ttgtttaacc accctgcagg cttacataaa gtggcggtat tatgatgttt aggcaataca
      901 agcggttcag ttttctcttt attttgcaaa tttctaccgc atttgctcaa cctaatattt
      961 ttacaccaga ttggtctatt gcctctgccc ttactgaaat gggaaatccg cccattgcga
     1021 tgggggataa gcgaatttat ccgctatggt cgcaccgccc tattcagcct aatagcgtgt
     1081 tagatattgg agcgcgttat cagcctaatc gcgaattatt agcacagctt cctgttgaat
     1141 tggtgctatc aaactttttc tacgctcact tggcttctgt ttacccgaaa gaaattccac
     1201 aaatagacgt gctatttgat ggtggcaata ctgaacctca gcaacattgg catacttacc
     1261 aaaaagccac tcgtatgatt ggaacagaga ttaaaaaccc taatgcggca gaagcatatt
     1321 taacgaaaac tgaacaaacg ttggctcaat tcatcattct tattgattgg ctgtattctt
     1381 ttatccttag taacagctgt tatccgttta aatatggtct gggagtggga atggcagtta
     1441 ctactcataa atgttgattt attgccaatt aatcaagctg cggtaaaagc agctctttta
     1501 cctgaaatga caacgtcatt tttagcaggc ggtttattgg ctatagccag cagtggctta
     1561 caacatattg tcagaaataa tttagcgtca gatagcacac ttgccgtcag tagcggggct
     1621 caacttgcat tgatgattgc ggttatcttt ttcccagccg ccgagctttt ttctagtttc
     1681 tggattgcgt tacttggctc tttagctgct atcgtactgg ttttatttat tgctaaagcc
     1741 tctaagctca atccccttac ccttatttta gggggattga ttgttaatat tttgtttgga
     1801 gctattgcct ctttactgac ccttttctac tttgattttt tatttggcgt gatggtttgg
     1861 ggaagtggct cacttttaca agatggttgg gcaacttcta ttatcttagc gataacggta
     1921 gtagttgcat tttttatctt tgtcttactc tctcgtccac tcacaatttt aagtttagat
     1981 gatgaacaag ctcgccgctt aggcgcgcct gttaatttac tacgctactt agttattttt
     2041 gtttgtgccg ccattacagc attggttgta agcaaaatag gtgtgattgg ctttattgga
     2101 tttgcaggtg caagtttggc tcattttgct aaaatacgac atttattact tcgcctcttg
     2161 attgcttttc tagcgggcgg atttttactc ttttttacca ataatctcat cggcattgtt
     2221 agcagaattt acgacactct actacctgtt ggtgcattta ccgcaacact aggcgcacca
     2281 ttattaattt tcttggtatt acgccaacgt aaagcacaat ttgaagcaag caatacagca
     2341 tacttccccg ttaaacgcct caattcgtgg aaactgccaa tattgttgtt atgcgctgga
     2401 gttatcctat tttgtctatt acaaatcatt gctccaacaa tgaatggctg ggctattagc
     2461 attgatgaaa acctgatgag ttcctaccgc ttgcctcgta gtctaagtgc gatagcaaca
     2521 ggggcaatgc ttgcggtaag tggtagccta ttacaaatct taacgagaaa cccaatggca
     2581 agccctgaag tattaggtgt gagttcaggg gcaactattg ctgcaatact gtcattctta
     2641 cttttcccaa cattatctag cattggcttc ttgttatttg gtgtattagg gagtttggcc
     2701 gttctcgctc ttattatgtg gctttcccgt aaattacaac catcagcgtt aatgattgca
     2761 ggtgttgcta ttggggcttt agtcagtggc ttaatggcta ttattcaact aagcggcagc
     2821 cctcgtttaa cggcagttat tagttggctg tctggctcaa cctattacgc taatccgaat
     2881 acagtttgga ttttattatc tgttgcaatc ctacttatca gtgccacttt actgtttatc
     2941 aaacctttac gcttgatctc acttggcgaa accgtttctc tccacttagg gttagaggtt
     3001 aaaaaggtgc agatgattgt attactttta atcgccctaa tgagtgccgc ctctacgctt
     3061 gctgtagggc caatgagctt cattgggcta atgacccctc atttagctaa aaatttaggt
     3121 gcaattacac cggagaaaca gatccctata tcggcattat taggggcaat gctaatgctc
     3181 attgccgatt ggctcgggcg ttatctaatt ttcccttatg agattggggc aggcattatt
     3241 gcctctattc tcgggggtat ctatttctta ctgttactca aacaacataa ataatttttt
     3301 attcattact taggagaaat tatgaacacg ctatctaaag cgataaaact tgccttatac
     3361 ggttctagta tagggtctat ctcaacagct tatgctgaaa cagttactca tcttaatacc
     3421 gttgaagtaa gtgccgaaac gccaaatgcc tcatcggaag aaactggacg ttatgcacag
     3481 aaaaaagcca aaggctctaa tggaatggca ttgagtgcga aagacacgcc acaaagcgta
     3541 acggctgtaa cgcatcaaca aatcagagat caaaatctta atacgattgc caaagcactt
     3601 gaagcaactc acggtgtttc tgtttcttta gttgacagag gacgctattc tttcagtgct
     3661 cgtggttttg ggattgataa agtcaaggta gatggtatgg atctcaaagt aaataaccaa
     3721 tggacaacgg gcgaaaatac aggcaacagc gtgttatacg accgagtaga agttgtgcgt
     3781 ggtgctacag gcttaactac tggggcgggc gatccctctg caagtgttaa tcttgttcgt
     3841 aaacgagcca atagcacttc ccgttatact attttagaag ctggaatcgg gcgttatgct
     3901 gatttcaata caatgattga ccatagccaa gcattgaata attcaggatc agtaagaggc
     3961 cgctttattg cagagcataa aaacggtaat acgttcatta aaaatgaaaa agaacgttac
     4021 accacgcttt atggcaatat tgaagcagac ttaactgaca ctaccaaact tgggttaggt
     4081 gtaagttatc aaaaagaaaa acgtgatgca gcactttggg gtggtttacc cgcattctat
     4141 agcgatggtg gtgaaactaa ctggagcaga agcaaaaatg ccagcccaga atgggcttac
     4201 tgggataatg aatccgtaaa ctattttgcc gatattacac aaaaactagg cgaaaaatgg
     4261 gaacttgcat taaaaggcaa ttaccgtgta ggcaaacata attcagaact tttctatttc
     4321 agcggctcat cacttaatcg acaagatgga ttaggttggt cgccttggcc gggtaaattt
     4381 aaaaatgata atacacaatc taatgtgcag cttgatctta ccggttcatt ctctgcttgg
     4441 ggattagaac acgatgcggc aatcggtatt caatacaatc gagcacatcg taattcctac
     4501 gctgccgata acagcacctt tgacggagct ttcgacttta ataattggaa tggcatttat
     4561 gctagaccaa actggggaag tatgtctgaa aaatactacc aaaacttaaa agagttcggg
     4621 gtgtatgttt ctacccgttt acgtcttaca gatagacttt ctatgcttct aggttctcgt
     4681 atttcatcgt accgcacaga aggcactttc tatggttcaa cacaaaactt ccacgctaac
     4741 gatgttggga caccttatgc aggattaacc tttgatatta atccacaaaa taccgtttat
     4801 gtaagttata ccgatatttt caaaccacaa agtcaagtgg acatcaataa caaactactc
     4861 tctcctgtta cgggcgaaac ctacgaagca ggttggaaag ggagttattt caatgacaac
     4921 ttgcaaactc aaattagcgt atttgaaaca agacaagata atctagctca atctgccggt
     4981 attaacccta atacattatt agcctactac acagcctcta aaggtgcgaa agttcgaggc
     5041 tttgaagtag aagcatctgg aaatgtaact gaaaaattaa aactcaatgc aggatatact
     5101 cagtggaaag gcgatgatgc ttcaggcaac ccaattaaca caactcaacc acgcaaacaa
     5161 tttaaattct ttgcaactta cgatatgaac cgtttagtgc aaggtttaac ggtaggagca
     5221 ggtgtaaact ggcaaagcag aatttatacc aaacacgcta cttatggcga atatggtcaa
     5281 aaagcttaca ctttagtgaa tttgatggct cgttatcaat ttaatgacaa cttctcagca
     5341 cagcttaaca ttgataactt attcgataaa aaatatcgta acgccctcag ctttagccaa
     5401 tatagctacg gtgagccatt ctatacacgc ttaaatttac gctatgaatt ctaattccgt
     5461 ataacaagcg gtcaaaaaat taaaaaaatt tgcaatttta ggcagtaatc ggtaaggtta
     5521 ctgcctaagt tatttattca tttttctagt tattgaggtt tacaatgaaa gttattttat
     5581 taggtgcacc gggtgcgggc aaaggtacgc aagctcagtt tattgtgaac aaattcggta
     5641 ttccgcaaat ttcaaccggc gatatgttcc gtgcggcgat taaagaaggc actgagcttg
     5701 gtaaacaagc aaaagcattg atggacgaag gtaaattagt gccggatgaa ttaacggttg
     5761 ccttagtaaa agaccgtatc gctcaacctg attgtgcgaa cggtttctta ttagacggtt
     5821 tcccacgcac cattccgcaa gctgatgcgt taaaagaggc tggcgtaaaa attgatttag
     5881 tacttgagtt tgatgtagcc gatgaagtga ttgttgagcg tatgagcggt cgtcgtgttc
     5941 accaaccatc agggcgtact taccacgtgg tgtacaatca accgaaagtg gaaggtaaag
     6001 atgatgtgac tggtgaggat ttaattatcc gccaagacga caaacctgaa accgtgttag
     6061 agcgtttagc gatttaccac aaacaaacca agccgttaat cacctactac accgcagaag
     6121 cagaagccgg caatactcgt tatgagcgtt tagacggtac aaaaccggta gaagaagtaa
     6181 gcgctgagtt agcgaaaatt ttatcttaaa cggattatta aaatgaacaa gcggtaatat
     6241 ttttcgagaa tattaccgct tgttatttgg cttaaacaca atatttggtg agc
//
LOCUS       DANLUT010000136         6076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLUT010000136 DANLUT010000000
VERSION     DANLUT010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..130)
                     /locus_tag="PXB38_002029"
     CDS             complement(<1..130)
                     /locus_tag="PXB38_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5354307.1"
                     /translation="MEQPTEFLTKDELADLTGYRQKKRQIEWLRERHYIIQDENKYK"
     gene            complement(220..726)
                     /locus_tag="PXB38_002030"
     CDS             complement(220..726)
                     /locus_tag="PXB38_002030"
                     /inference="COORDINATES: protein motif:HMM:NF024784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL5354308.1"
                     /translation="MRILPRNENYAATENGEIFSFLSNKILKPRPLKNGYLRVQLVDE
                     NGVKDYLIHRLVCETFHGYPDLHVNHKDRDKTNNRPENLEWCTRSENMLHCSRLGGFS
                     KQSERMKKMNIESCSVPVAAITLDGKLFKKYTSMTSAGKDGFSHSKISLCIQGKRKTH
                     KGYIWQKL"
     gene            complement(704..1300)
                     /locus_tag="PXB38_002031"
     CDS             complement(704..1300)
                     /locus_tag="PXB38_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5354309.1"
                     /translation="MPLSITANPTKAVQLKHQGEALSGGSETLVVHGTQDPIISQNKA
                     HCLGRNNGQENVLFEVKGAEAVRISEIQDKTPTLKARMGTGGNNIPCIALAGNTIGRQ
                     PQNDGNGNVFDESGVSYMLTRTDVHAVSAGTTIRKLTPTECERLQGFPDGWTKITYRG
                     KSAEECPDSPRYKAIGNSMCTNVMKWIGERLSAYLTSQ"
     gene            complement(1221..2540)
                     /locus_tag="PXB38_002032"
     CDS             complement(1221..2540)
                     /locus_tag="PXB38_002032"
                     /inference="COORDINATES: protein motif:HMM:NF024795.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HDL5354310.1"
                     /translation="MNNIIKFTYGSICSGIEAASVAWHDIGTPLWFSEIEPFPCAVLA
                     HRFPDVPNLGDMTALPEKILNRKIPAPDVLVGGTPCFTAGHMVLTDKGYMPIETLSVG
                     DLVVTHKGQLKPILRVGSEIKPVGKLTAVGLPESIVCTPEHPFYAQKWQTINTKRNGK
                     YHRKTIISKPEWIEAHKLEGYQWVSLTDFSVMPYGGFHSKLTDDEVLLIAGYYLGDGW
                     IRRWKGKNKKAVVISVNKEKYRKFSLSFAKLPHHITTENNSVIKITICDTELADFLYS
                     QFGEKAGGKTIPAWCLSHSFRSKIFEGYMITDGSFRNGVYTANSISKSLAYGIAALSQ
                     TLGYISSVSKVTVAPTKEIQGRIVNQNDYYQMRAFLQSTSRKSRLDENRLLRSVQSFE
                     ITGNEVVYNIEVADDNSYILNNAVVHNCQSDKGGTVKASGGGFEWRE"
     gene            complement(2537..3442)
                     /locus_tag="PXB38_002033"
     CDS             complement(2537..3442)
                     /locus_tag="PXB38_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL5354311.1"
                     /translation="MQFQEHNNRKKADKFAEYITGEALRRYVAEKVKQYARNNVSVFD
                     GAAGSGQLEQFVRPTSFTAVEVQSESCDVLRHNFPTAQIYNQSFFLYPNGEPCDCVIM
                     NPPFSLKFKDLSQAEQAQIQSEFPWKKSGVVDDIFVLKGLANSHQWGFFILFPGVGYR
                     QTEKRFREEVGNQLVELNRIQNAFEDTPIEVLFLVVDKTKTTDDCSRELIDCAGGQIQ
                     QICADKWKIRPDHWESIQPPPPPQEEIKPLELEAFAREQAIERIVGEVRLSKLIAEFF
                     EPELRRTFNAFIDDICVAVQAEKIV"
     gene            complement(3676..4353)
                     /locus_tag="PXB38_002034"
     CDS             complement(3676..4353)
                     /locus_tag="PXB38_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5354312.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHTAQSAHKILERITKEFDYDPMTNWRVLKHVRGFDP
                     AFKKPTF"
     gene            complement(4601..5440)
                     /locus_tag="PXB38_002035"
     CDS             complement(4601..5440)
                     /locus_tag="PXB38_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL5354313.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            5670..6047
                     /locus_tag="PXB38_002036"
     CDS             5670..6047
                     /locus_tag="PXB38_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354314.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
BASE COUNT         1578 a         1244 c         1252 g         2002 t
ORIGIN      
        1 gcttatactt gttttcatct tgaattatat agtgacgctc cctcaaccat tcgatttgtc
       61 ttttcttttg acgatagcct gttaaatcag caagttcgtc tttcgttaaa aattcagtag
      121 gttgttccat attctctcca aataaccccc tcatttagag ggattgagtt aaataatcgt
      181 taagcctttg tcctatccac cgcatacaag ggacggccat tataactttt gccatatgta
      241 acccttgtgc gttttgcgtt taccctgaat gcaaaggctg atttttgaat gtgagaaacc
      301 atctttacct gcacttgtca ttgaggtgta ttttttgaat aatttcccgt ccagagttat
      361 tgcggcaaca ggaactgagc aactctcaat attcattttt ttcatcctct cggactgctt
      421 gctaaaacct ccaagtcttg agcaatgcaa catattttct gagcgtgtac accactctaa
      481 attttcaggt cggttatttg ttttgtctct gtccttatga tttacatgta gatctggata
      541 accgtgaaaa gtttcgcata ccagtctatg gattaaatag tcttttactc cattctcatc
      601 tacaagctga actcttaaat aaccattctt taaaggtcta ggttttaaga ttttgttgct
      661 caagaaacta aaaatttctc cattctcggt agctgcatag ttttcattgc gaggtaagat
      721 acgcacttaa tctctctcct atccatttca ttacatttgt acacatcgaa tttcctatcg
      781 ccttatatcg tgggctatca gggcattctt cggcagattt gccacggtat gtgattttcg
      841 tccagccgtc tggaaagcct tgtagtctct cgcattcggt gggagtaagt tttcgaatag
      901 ttgttccagc actgacagcg tgaacatcag ttcgggtaag catgtaactt acaccactct
      961 catcaaatac gttgccgttt ccgtcgtttt gtggctgtct gccgatagta ttaccggcaa
     1021 gggcaataca agggatatta tttccacccg tccccattct tgctttcagt gttggcgttt
     1081 tgtcctgaat ttcgctaatt cgtacagctt cagcaccttt tacttcaaat aagacgttct
     1141 cttgcccgtt gtttcgacct aaacaatgag ctttgttttg gctgataatt ggatcttgcg
     1201 taccgtgaac aactagcgtc tcactcccgc cactcaaagc ctccccctga tgctttaact
     1261 gtaccgcctt tgtcggattg gcagttatgg acaacggcat tatttaagat gtagctgttg
     1321 tcatctgcca cctcaatgtt ataaacaact tcatttccag ttatctcaaa ggattgcacg
     1381 cttctcaata atctattttc atcaaggcga ctttttcttg atgtcgattg gaggaacgct
     1441 cgcatttgat aatagtcatt ctgattgaca attcttcctt ggatttcttt tgtcggagca
     1501 acagttactt tggaaacaga tgagatatat cctaaggttt gggataatgc agcaatgccg
     1561 taagcaaggg atttcgaaat gctatttgcg gtataaactc cgtttctaaa agagccatcg
     1621 gtaatcatat acccttcaaa aattttactt ctgaaagaat gagataaaca ccaagccggt
     1681 atagtttttc cgccggcttt ctcaccaaat tgcgaataaa gaaaatcagc aagttcagtg
     1741 tcacaaatag tgattttaat taccgaatta ttttcggtag taatatgatg aggaagtttg
     1801 gcaaaagaaa gagaaaactt ccgatatttc tctttattta cagaaataac aacagctttt
     1861 ttatttttgc ctttccatct tcttatccag ccatcaccaa gataataacc ggcaattaga
     1921 aggacttcgt catcagtcag tttgctatga aaaccaccat agggcataac tgaaaaatca
     1981 gttaatgata cccattgata gccctctagc ttatgagcct caatccactc aggtttggaa
     2041 atgatagttt tcctatggta ttttccattc cttttggtgt ttatcgtttg ccatttttga
     2101 gcataaaaag gatgttcagg ggtgcaaacg attgattcag gtaagccaac agccgttaat
     2161 tttccaactg gttttatttc actgccaaca cgcaaaatag gttttagttg tcctttatga
     2221 gtaacaacta aatctccgac agaaagtgtt tcgattggca tatatccttt atccgttaaa
     2281 accatatgcc cagcggtaaa gcaaggcgta cccccaacca acacatcagg agcaggaatt
     2341 ttacgattga ggattttttc aggtagggcg gtcatatcgc ccaagttcgg cacatcgggg
     2401 aaacggtgag caagcactgc acacggaaac ggctcaatct cgctgaacca taacggcgta
     2461 ccgatgtcgt gccacgctac acttgctgcc tcaatgccgg agcagataga tccataggtg
     2521 aattttatta tgttgttcat acaatcttct ccgcctgcac cgcaacgcaa atatcatcaa
     2581 taaatgcgtt aaaagtgcgg cgtaattctg gttcaaaaaa ttctgcgatc agcttggata
     2641 agcgaacctc gccgacaatt cgttcaatcg cttgctctcg ggcaaacgcc tctaattcaa
     2701 gcggttttat ctcttcttgt ggcggtggtg gcggttggat actttcccaa tgatcaggtc
     2761 taattttcca tttatcagca caaatttgtt gaatttgccc accagcacaa tcgattaact
     2821 cccgagagca atcatcggtc gttttggttt tgtctaccac caagaatagg acttcaatcg
     2881 gggtatcctc aaaggcgttt tggatgcggt tgagttctac aagttgattg ccaacttctt
     2941 ctcgaaagcg tttttctgtt tggcggtagc caacgccggg aaagagaatg aaaaatcccc
     3001 attggtgact atttgccagt ccttttagga cgaaaatatc atcaaccacc ccagattttt
     3061 tccacggaaa ttcggattga atttgtgctt gttcggcttg gcttaaatcc ttaaatttaa
     3121 gggaaaatgg cggattcata atcacgcaat cgcacggttc gccgttagga tagagaaaga
     3181 agctctgatt atagatttga gccgtaggga aattgtgccg taacacatcg cagctttcgg
     3241 attggacctc taccgcagta aaagaggttg ggcggacaaa ttgctccaac tgcccagaac
     3301 ctgccgcccc gtcaaaaaca gaaacattat ttctggcata ctgcttgacc ttttcagcaa
     3361 cataacggcg tagagcttca cctgtgatgt attcagcgaa tttgtcggct tttttgcggt
     3421 tattgtgttc ttggaattgc atttttcctc caaaaaataa ccgcttgcgg aacaagcggt
     3481 tgggttaatt agcgttgagc tgtacaaatt ttgccatcgc agtcgttgcg taactctaga
     3541 tggtcagcag caactgcaaa ggcggttaaa aagagtatga tttttgcgta tttcatcgtc
     3601 taatcctcaa aatttgggtg caggaaaccg ccgcttgatg tttcgcaagc ggtcgggttt
     3661 tataattttt tgtgattaga acgttggctt tttaaatgcc gggtcgaaac ctcgaacgtg
     3721 tttgagtact cgccagtttg tcatcgggtc gtaatcaaat tctttggtaa tccgttcaag
     3781 aattttatga gccgattgtg cggtgtggct atattcaaaa ccctgtccgt agatttcagg
     3841 tgcgatattt gagccgagtt tttgaaacat cgggtagata tagcggaaag tgtgaatgcc
     3901 acgcacgaaa gcgaaccaag cccatatgag gctttggagt tcatcttcgg taaagtcgaa
     3961 agagtatttc tttggcggtg gtgcaagcgg taggttttgc tgattatttt gcaacgcata
     4021 tttaccagtc ttgcgaattt gtggcagaac ttcttcaaat acccacgctt caaacttttc
     4081 cgcttctggt ttgcgtgatt tgataatcag tcggtatagg tttggttcgt tgatgaagat
     4141 cgctttttgt tgtctctgca ttttatcggt gaggtatcgt ttcgataccc cattttcttt
     4201 acagtgtttt tgcagagtaa ggctttcatt tacataacct aaaattcggc aaacatctgc
     4261 accgcaaaac cacggttctt gatttggatc gataatgaca cgaacagcag atgaattgaa
     4321 attgaaaaca gggaattgaa cttgatttga cattttttgt accttttgga tttaagtatt
     4381 taatccgatc attaagtggg tgatcggggt tcaacttacc ctccaaaaga tgggcggagc
     4441 ttattcagat gtattgtata tcgctctctc gccccgatca tttcggatta aacctaaaat
     4501 ttaggtacaa aaaaaccgct ttatatcgga ggcggaaacc gcttttggaa agtaagtgtg
     4561 gttatcttag ccgaaagggc ggttttttgt caattagatt ttattcttca attagcaatg
     4621 gcttttcttt cagttcttca atcgctctgg tttgtaacag cgagctcatt tgctgaatag
     4681 ccaaacggtt gagcattgcc agtcgctctt cttggctgta accttgctca attagtaggg
     4741 cgttttggct ttccaatgca gcaaggacgg taagttgctc aacggtagcg tggtctcgca
     4801 tattgccttt caggttcgga ttgcggtctt tccactgttt tgccgtttgt ccgaagagag
     4861 cttgattgag aatgtccgct tcgctggaat aaacgaaagt atgttgtttt gtattcagca
     4921 atgccggtat gatgtgagct ttgatggcat cagtatgaat gcggtagttc gccttgctta
     4981 aaatgcgttt tacgctccat tcgagcttac tttcgttcgc ttcttgctgt ttgagtcgtt
     5041 ggaactcttt gatgagataa agcttaaatt ctggactgag ccaagaacca aattcgagag
     5101 caatatcttt gtgggcgtaa gtgccgctac catatcgtcc tgcttttgct actagcccaa
     5161 tagctcccgt tgcagtccat tttttgacag acatcacaaa gcggtttaag ccgatgttgt
     5221 ttttaatttg gtgtaattcc accaaattaa aatttggatt attcagctct tcccaaactt
     5281 gaagaaattc aatggtattt ttattttgaa gccagttttt aatgagctgg tcactgtctc
     5341 caaaagcttt gcacatatca gttaggctga tgtaatcctc accatcacga gcggttactt
     5401 tgacctccac gccttgtaca atcattacgc tatttgccat ttcgtttctc cgtttttagg
     5461 tacaaaaaaa gccgttggtg gacggcttga aagtgcggtt atcttaatcc gaattggggg
     5521 cggtgtcaat tagattaatc cgtataagta tggaaccaag ttaaagagta gaactacaac
     5581 acataaccaa aaaatgaaat tcatatcttg ctcagttttg attttgtgta aaatacgctt
     5641 aagtttgttt ttcatttagg aaacctttaa tgtttagttt attgcgtgat gctttaacct
     5701 ttgctgcaat gtttacaggg attttatttc ctgcaattat tcataaatac gatctatcac
     5761 ttggtacaca aatccaatta cttagctttg ttccagcttt ctttgtgttg tgccattttc
     5821 ttattaagcg aaaatatcaa cgtgattttg acagactttc gtatttatct gctgtggttt
     5881 gcgtagcaat gtgtgcaggc gttggagcat ttagccaatc agaaatgatt gagctaggtt
     5941 ttaaagttga gcgtgttctt gattatgtga ctatcaaatt cttactctac ttttggagct
     6001 tgctgttatt gccagttgtg ctaagaaaat tgtttgggaa agattagttg gttatttaaa
     6061 gagagctatt tgtcaa
//
LOCUS       DANLUT010000137         6066 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLUT010000137 DANLUT010000000
VERSION     DANLUT010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6066
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            44..3115
                     /gene="fdnG"
                     /locus_tag="PXB38_002037"
     CDS             44..3115
                     /gene="fdnG"
                     /locus_tag="PXB38_002037"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:629..631,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL5354315.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDETTRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFAQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKADLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3118..4032
                     /gene="fdxH"
                     /locus_tag="PXB38_002038"
     CDS             3118..4032
                     /gene="fdxH"
                     /locus_tag="PXB38_002038"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL5354316.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYILHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4025..4702
                     /locus_tag="PXB38_002039"
     CDS             4025..4702
                     /locus_tag="PXB38_002039"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL5354317.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4758..5675
                     /gene="fdhE"
                     /locus_tag="PXB38_002040"
     CDS             4758..5675
                     /gene="fdhE"
                     /locus_tag="PXB38_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL5354318.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5745..>6066)
                     /locus_tag="PXB38_002041"
     CDS             complement(5745..>6066)
                     /locus_tag="PXB38_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354319.1"
                     /translation="FFVISLFLTMNSISYASNPIPSNKEKLNGVKKQQDKPKFRISER
                     KVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYFKSQCRYAFMSDREIIANRCEVK
                     KIAD"
BASE COUNT         1784 a         1312 c         1376 g         1594 t
ORIGIN      
        1 caaattttat tttatttctc acattatgtg atttggagtg attatgcaga tctcaagacg
       61 taagttcttc aaggtctgtg caggtggtat ggcgggaact tctgctgcaa tgttgggttt
      121 tgctccagca acagcattag ctgcaccgcg tgagtataag ctcttaagag caaaagaaac
      181 tcgacaaacc tgtacttact gcgcggtagg ctgtggcatg attatgtaca gcttaggcgg
      241 cgaagcaatg aacagcaaag gaaagttaat tcatattgag ggtgattctg accatccagt
      301 aagccgtggg gcgttatgtc cgaaaggtgc aggggcgttg gactatgtta atagtgaccg
      361 ccgtgtgcat tatccggaag tgcgtgaagc cggttcaagt gagtggaaac gcatttcttg
      421 gcacgaggca attgaacgta ttgcccgcca tatgaaaaat gaccgtgatg agaacttcgt
      481 cacccacaat gaagcagggc tggaagtaaa ccgttggatg acggcaggtt tcttggcagg
      541 ctcggcgtgt agtaacgaaa ccggtatcgt cacccagaag tttatccgct ctctcggtat
      601 gatttttacc gacaaccaag cgagtatctg acacggacca acggtagcaa gtcttgctcc
      661 atcatttggt cgcggtgcga tgaccaacca ctgggttgat attaaaaact ccgatttagt
      721 gatcgttatg ggcggtaacg cagccgaagc tcaccctgtg ggtttccgtt gggcagttga
      781 agcgaaaaaa cagaacggtg cgaagttaat ggtggtagat ccacgcttta accgtagtgc
      841 tgcggtggcg gatatttata taccattgcg tccgggtacg gacattgcgt tcttgttagg
      901 tgcggtaaac tacctgctta aaaacgacaa aattcaacac gagtatgtga agcattacac
      961 caatgccaca ttcttactca acgaagggtt taaattcgaa gacgggcttt tcaccggcta
     1021 cgatgaaacc actcgtacct ataaagacaa atccacttgg gcttatcagt tagatgaaca
     1081 gggtcagccg aaacgggata tgacaatgca agatccacgt tgtgtgatca atatgctcaa
     1141 agaccacgtt tcccgctata cgcctgaaat ggtagaacgc attaccggta cgccacaaaa
     1201 agatttcctg attttctgtg aagagattgc gaaaacctca gcgccggata aagccgccac
     1261 cttcctctat gccttaggtt ggacacaaca caccgtgggc gcacaaaaca ttcgctcaat
     1321 ggcgatcatt cagttgctgt gcggtaacat tggtgtctcc ggcggtgggg taaacgcact
     1381 gcgtggtcac tctaacgtac aagggattac cgacctaggc ttgttcccac atatgttgcc
     1441 gggctatatc cgcctgccaa ccgaagcgga cgcaacctta gaaagctact taaatgcgat
     1501 tgcaccgaaa accttagtgg cagggcaagt aaactacggg caaaacaacc cgaaattcgc
     1561 tgtgagtatg ctcaaaacct tctacggcga taaggcaacc aaagagaacg agttcggcta
     1621 tcactattta ccgaaatacc cgaaaggcgg tacagatcac ttccgcttta tcgaacagat
     1681 gtatcaaggc aaagtgaacg gctatttctg ccaaggtatg aacccgattg cctcttaccc
     1741 taactcgcag aagttaatta aagcgttgag caatttgaaa tatttagtca tttttgaccc
     1801 gcttattacc gatacttccg agttctggaa aaatcacggt gagttcaaca atgtgaaccc
     1861 gtctgaaatt caaaccgaag tgttccgctt gccgaccact tgctttgcgg aagaagatgg
     1921 ttcaattgcg aactccggtc gctggttaca atggcactgg aaagcagcag acgcaccaca
     1981 cgaggcaaaa ccggacgtgg atattctgtc tgaaatccgt gccgaactga tccaccttta
     2041 tcataaagaa ggcggaaaag caccgcttga accgttagaa gcgatgacgt ggaactatat
     2101 gaacccgtta gaaccgaagc cggaagagat cgccaaagag aacaacggtt atgcattgga
     2161 agatctgaaa gatgcagacg gcaacatcat cgtgaaaaaa ggcgaactat tatccagctt
     2221 tgcacaaatg cgtgatgacg gtacaacctc cggtggttgt tggatctact gtggtcaatg
     2281 gactccgaaa ggtaaccaaa tggcgaaccg tgataactcc gacccatcag gcttaggtaa
     2341 caccttaggc tgggcattct cgtggccggt aaaccgccgt attctataca accgtgcatc
     2401 ggcagattta agcggtaaac cgtggaaccc gaaacgccag ctagttaaat ggaacggtaa
     2461 aaactggaac tatgtggacg ttgccgatta cggtacagca ccaccaaata gccctgtgac
     2521 accatttatt atgcaaccgg aaggggtatc cggcttgttc gtgcgtgaac gtatgcaaga
     2581 cggtccattc cctgagcatt atgaaccgtt tgaaacgcca atcggcacga acccgttaca
     2641 cccgaatgta atcagcagtc cggtggcacg cattctgccg agcgataaag cggatttagg
     2701 caccagcgat gagttcccat atgtcggtac aacttaccgc ttaaccgaac acttccacta
     2761 ctggacgaaa aatgccctga ttaacgtcat tgctcaaccg gagcaattcg tggaaatcgg
     2821 cgagaaactt gccgaagaga aaggcattaa aaatggcgac aaagtacgtg tttggtctaa
     2881 acgtggcgaa attaaagccg ttgccgtggt gactaaacgt atccgttcat tggtctctga
     2941 cggcaaacca atccacacta tcggtgtgcc gatccactgg ggctttgcgg ctacaaccgg
     3001 tgcgaaaaaa ggctattttg ccaataactt aaccgtgcga acaggtgaac caaactcaaa
     3061 tacacctgaa tcgaaatgta tgttattaaa cattgagaaa attgtggggg cttaacaatg
     3121 agtacagttc aaactcaaaa cattattaaa atctccgcaa cctcggcgct gacaccggcg
     3181 ccgcaggctc gttcgcacca agtggaagta gcgaaactga tcgatgtcac cacttgtatc
     3241 ggctgtaaag cctgtcaagt gggctgttca gaatggaatg acattcgctc cgatgtaaat
     3301 gcaaactgtg tcggcgtgta cgacaaccct gcggatctaa atgcgaaagc gtggacagta
     3361 atgcgcttta acgaagtaga agaaaacgac cgtttagaat ggttgatccg taaagacggc
     3421 tgtatgcact gtgccgagcc gggttgcttg aaatcttgcc cgtcaccggg tgcgattatc
     3481 caatacgcca acggtattgt tgatttccaa tccgacaaat gtatcggttg tggctactgt
     3541 atcgcaggtt gtccgttcaa cattcctcgt atgaatccgg acgataaccg tgtttacaaa
     3601 tgcaccctgt gtgtggatcg tgtcaatgtt ggtcaagaac cggcttgcgt gaaaacctgc
     3661 ccgaccggtg caatccgctt cggtagcaaa gaagagatga agttctatgc agaacaacgc
     3721 attgctgatc tgaaatctcg tggctatgaa aatgccggct tgtacgaccc tgaaggcgtt
     3781 ggcggtacgc acgtaatgta tatattacat catgccgaca aaccggagct ttattcaggc
     3841 ttaccgaaag atccgaagat tgataccaca gtaaccttat ggaaagacgt tttaaaacct
     3901 gtggcggcag tagcgttggg tggtttagct ttagcagaag ttgcacacta tattaccgtt
     3961 gggccaaacg ttgaggaaga tcttgaagaa caccaccata gcgaaaatgc agaaggaggc
     4021 aaacatgagt aagaaatttg aaatcacgaa cgataccaaa atcgttcgtc ataagccctt
     4081 agctcgtgtt agccactggt tcttagtaat ctcgtttttt atgacgatgt ttaccggtgt
     4141 tgccttcttc ttccctgact ttgcttggct taccgagatt ttaggtactc cccagattgc
     4201 ccgtgcagtc cacccattta ccgggattat aatgtttatt gcatttatta ttatggcgtt
     4261 aatatattgg caccataata tccctgagaa aaatgatatt cgttgggcaa aaggcattgt
     4321 tgaagtacta aaaggtaatg agcataaggt ttccgataat ggaaaataca atttgggtca
     4381 aaaattactc ttttggactc ttattcttgc gatgttcact cttttagcca cagggattat
     4441 tatgtggaga caatttttct ctcactactt ctcgattcct atgctaagaa ttgcaatttt
     4501 acttcattca gcaagtgcat ttatgctatt taccggaatt ttagtacata tgtatatggc
     4561 attctgggta aaaggctcaa tcagaggtat ggttgagggt tgggttaccg ttcgctgggc
     4621 aaaaaaacac cacccaagat ggtaccgtga agaagtgcta cctgaattag aaagacaagt
     4681 agctgagcaa aataataaat aacctcaagt gcggtattat taccgcactt ttattttatt
     4741 ggtttaaaaa gaatattatg agtatcaaaa tactacctca agatgatatc aaacaagcag
     4801 ctagttcatt tcagcaaccc gagctcttat ttgctaatcc caaaaatctg tatttacgcc
     4861 gcgctaagcg gctacgtgaa ttagccaagc aaaacccatt cggtgaatat atggagtttt
     4921 ctgctaacct cgtggacatt caattagcat tacttgaaag ccagccaatt gcagattatt
     4981 ctcaaaaaat aaccgcttgt gtagagcgca cgcaaggaga aacaccgcta aatgcacaga
     5041 attttcagcg tactgatgaa tggcggacac tactcttagc cattattgag aaattcaagc
     5101 cttatgcaaa tgatactgtt cttgcaacaa ttgaagtatt ggaaaaggca gctaagtcag
     5161 agctagacac acttgctgat aatttgctaa atgaacgata cgaacttgtg ggcgcagata
     5221 aagctgtctt tatttgggct gctctctcac tttactgggt acaattagct caacaattac
     5281 cacgtaattc tcgtgcagaa ataggccata aacatttatg tccggtatgt aactcagcac
     5341 ctgtaagcag tgtgattcat ttcggtgaag ctcaagggtt acgttatcta cactgttctt
     5401 tatgtgaaag tgaatggcat gtagtacgta caaagtgtac aaactgtgat gaaaccggca
     5461 aactggatta ttggagctta gatacagtag aagcagcagt taaagctgaa agttgtggcg
     5521 actgccattc ctacttaaaa gtactctatc aagataaaga cgtgaatgtg gaacctgttg
     5581 ctgatgattt agcaactcta ttcttagatt ccgagatgga acaaaaaggt ctttcaagaa
     5641 gtgggataaa tccattttta tttcaagtag agtaactcat ttacaacaaa aacggagcat
     5701 aacgctccgt tttttattac atttaactca tacactatac ttttttaatc agctattttt
     5761 ttaacttcac agcggttagc aataatctcc cgatctgaca taaatgcgta tcggcattga
     5821 gatttaaaat attgaatcac agaatcatca agaggtcgtt gtgctccaac acgtaattcc
     5881 tccatagaaa aattactaac ctcttcatct ttctctttat ttttcaatac cttacgttca
     5941 gatattctaa acttaggctt gtcttgctgt ttttttactc cgtttaattt ttctttatta
     6001 ctaggaatag gattacttgc ataactaata ctattcatcg taagaaaaag agaaataaca
     6061 aaaaag
//
LOCUS       DANLUT010000138         6064 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLUT010000138 DANLUT010000000
VERSION     DANLUT010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6064
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(194..1480)
                     /gene="purD"
                     /locus_tag="PXB38_002042"
     CDS             complement(194..1480)
                     /gene="purD"
                     /locus_tag="PXB38_002042"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL5354320.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1714..2088
                     /gene="rpsF"
                     /locus_tag="PXB38_002043"
     CDS             1714..2088
                     /gene="rpsF"
                     /locus_tag="PXB38_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL5354321.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2063..2437
                     /gene="priB"
                     /locus_tag="PXB38_002044"
     CDS             2063..2437
                     /gene="priB"
                     /locus_tag="PXB38_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL5354322.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2412..2639
                     /gene="rpsR"
                     /locus_tag="PXB38_002045"
     CDS             2412..2639
                     /gene="rpsR"
                     /locus_tag="PXB38_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL5354323.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2655..3104
                     /gene="rplI"
                     /locus_tag="PXB38_002046"
     CDS             2655..3104
                     /gene="rplI"
                     /locus_tag="PXB38_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL5354324.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3168..3944)
                     /gene="dnaQ"
                     /locus_tag="PXB38_002047"
     CDS             complement(3168..3944)
                     /gene="dnaQ"
                     /locus_tag="PXB38_002047"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL5354325.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4032..5702)
                     /gene="ettA"
                     /locus_tag="PXB38_002048"
     CDS             complement(4032..5702)
                     /gene="ettA"
                     /locus_tag="PXB38_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL5354326.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENALLEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1600 a         1392 c         1287 g         1785 t
ORIGIN      
        1 aagatctttt tagtctttgc caatattgac agttttttcc acatataggg cacgcagagt
       61 catttagaaa agagtttact gcatcgttta atgatagtga tttaatttcg gggcctgcat
      121 cgagttcagt gatattaatt tcattaagtg ttgtactcat aataaatttt tccttgtttt
      181 aagagtttat aaattatttc gcttgttttc ttgccactgc tcggtagcca atatctcggc
      241 gatagaattt gccttgccat tgaatttgtt cggcaagttg taaggcttgt tgttgagctt
      301 caaatacact gttgccaagt gcggtggcac aaagtacacg tccaccgttg gtgagcagtt
      361 ttccttcttt ttgctcaacc cctgctaaga aaactttttg attggaggta gaggtcggaa
      421 tgcctatgat ttcatcgcct ttacggtaat cgcccgggta gcctgcggca gctaaaacaa
      481 tgcctaatgc ggcttgttca caccattttg attgcacgct atccaatttg ccttcgcacg
      541 cttttaagca caattcaacg aggtctgatt ccaaacgcat cataatcggc tgagtttcag
      601 ggtctccaaa acggcagtta aattcaatca ctttcggctg accgtttggc ataatcatta
      661 agccggcata gagaaaaccg gtgtaagggg tattttcgct tgccattcct tgcacggtcg
      721 ggtaaataat ttcgtccatt acacgttggt ggattgcctt tgttaccacc ggagcagggg
      781 agtaagcccc cattccgccg gtatttaagc cgctatcgcc ctcgccaaca cgtttgtggt
      841 cttgtgaggt tgccattggt tcgacatttt tgccgtccac catcacaata aaactggcct
      901 cttctccgtc taaaaattcc tcgatcacca cacggctgcc ggcttcacca aaggcgttgc
      961 ctgacagcat atcacgcact gcatcttccg cctcttgtaa agtcattgca acaattacgc
     1021 ctttgcctgc ggctaaaccg tctgctttga ttacaatcgg tgcacctttt tgttttaagt
     1081 aggcaagtgc cggttcaatt tcggtgaagt tttggtattc tgcggttgga atctgatggc
     1141 gagccaagaa atctttggta aatgctttag aaccttctaa ttgagcagcg gcttgggtcg
     1201 ggccgaaaat ggttaaaccg tgggctcgaa aagcatcaac cacgccaact actaacggtg
     1261 cttcagggcc gacaatcgtc aaacctacgc tattttgttt agcgaatgta actaaggcag
     1321 gcacgtcagt ggcggaaata gctacatttt caatgccgtt ttccatcgct gtgccggcat
     1381 tgccgggggc gacaaagact ttgtctgcga gcggcgattg acgaactttc caagcaagag
     1441 cgtgttcacg cccaccgttg ccgataatta aaatattcat tgggattcct tgcaaaaatg
     1501 ataaagcaaa cgtttgcgta ttgtacttga tttgtttatc tgctgacaag cggtcgtttt
     1561 tctcggattt tttgcaaaat acgaaattgt tgcttgcaaa ataggctttt ttcagtataa
     1621 tcctgccgtt cagtcacatt cgttttttaa tccttgcttc cacaagttgg tgactggcta
     1681 aagttggagg ctgctaaccc gtaaggatag tcaatgcgtc actacgaaat cgtttttatg
     1741 gttcacccgg accaaagcga acaagtacca gcaatgattg agcgctacac agcgtctgta
     1801 aaagaagctg gcggtcaagt tcatcgctta gaagattggg gtcgtcgtca attagcatac
     1861 ccaatcaaca aacttcacaa agcacactat gtgttaatga atgtagaagc acctcaaagt
     1921 gtaatcgacg agttagaaac taacttccgt tataacgatg cagttcttcg taacttaatc
     1981 gttcacacta aagcggcagt aactgaagcg tcaccaatgg tgaaagcgaa agaaagcaaa
     2041 gttgctgaag cggtagctga agttgaatca gaggaagcag gcgagtaatt tgccgattga
     2101 taattgttta atcttaagcg gaacggtttc cagcttggtt aaacaaagcc taaaccccct
     2161 tggtgtgcct cattacagtt tttggttaga acatcgttca atccaaaccg aagtgaattt
     2221 agaacgccaa gcgtggtgca aaatccaagt ggttttggca ggcaatcaat ttagttattt
     2281 aacccaacaa attaagctcg gtgagagcgt gagaattaaa ggttttatcc atactcacaa
     2341 agactttaac ggtttaaatc agttagtctt acacaccgaa caaattgaat ttatagatca
     2401 ggagaagcca aatggcacgt tatttccgtc gtcgtaagtt ctgccgtttc acagcggaaa
     2461 atgttgttga aatcgattac aaagatatcg ctacattaaa gaactacatt tctgaaagcg
     2521 gcaagattgt tcctagccgt attactggta ctcgtgcgaa gtatcaacgt caattagctc
     2581 gtgcaattaa acgcgctcgc taccttgcgt tacttccata tactgataac caccaataat
     2641 caggagagag tacaatgcaa gttattttat tagacaaagt tgctcactta ggttctgtgg
     2701 gcgaccaagt aaccgttaaa tctggttttg ctcgtaactt cttaatccca caaggtaaag
     2761 cggttatggc aactgcggca aacattgctc actttgaagc acgtcgtgca gaattagaag
     2821 caaaagctgc agcagcatta gcaactgcac aagaacgtgc agcgaaaatt gcagcattag
     2881 cagcagtatc agtatctgca actgcaggtg atgatggtcg tttattcggt tctgtatcag
     2941 ctaaagacat cgctgaagca ttaactgcag caggtgttgg agttgctaaa tctgaagttc
     3001 gtttaggtga aggtccactt cgtacaaccg gcgaacacca agttaaaatt cacttacacc
     3061 ctgaagtgaa tgcaactgta gcagtaaacg ttgttgctga ataatcagta gaaatagaaa
     3121 acccagcgaa agctgggttt tttgtttgct ttatttattg gttagaatca gtgagatatt
     3181 tctgctgtgt cggttaatgc ttttgtccat aggcaatttc ctttggattt tttctcaatc
     3241 agtttcagaa gtgctaaatg cgactcttcc tcttcatcgt ttgctttaag aataattgcc
     3301 tcatcggcat ttaacacaat tgcagaaaat tcttcttcaa tatcaataac ttcacttacc
     3361 acttcagttt cttcttcgcc taataatgaa atctgaccgc cggtcatcat taggaataca
     3421 tcagctaaga tctccgcatc cagtaacgcc ccgtgtagta cacgcttgct attatcaatg
     3481 ccgagcctgt cgcaaagtgc atctaaatta ttccgtttgc cggggtacat tcttcgtgcc
     3541 atttgcaggc tatcggttac ggtacacatt tctgcggttt ttgccggtgg attaggcaga
     3601 taagaaaatt cttgatccat aaacgccaca tcgaaggggg cattatgaat aattaattcc
     3661 gcacctttga tgaaatccaa aaactcctcg gcaatttcag caaaaacagg tttatcttgc
     3721 aaaaattcat tggtgatgcc gtgaactgca atcgcctctt catctacctc acgcggtggc
     3781 ttgatataaa cgtgataagt tctgccggtt aaacggcggt taatgacttc aaccgcaccg
     3841 atctcaataa tattatgccc aatctgtggc gggccacctg ccatattcat tcctgtggtt
     3901 tcagtatcca gcactacttg gcggataatt ttttcttctg tcatattcaa tttaaaattg
     3961 taggggtgaa atatttttat cccttaattc tgcatttgat taggggcgaa acatatttcg
     4021 cccctacatt gttacttcgc aatccgttta tatttcactc ggtgcggttg ggtggcggct
     4081 tcaccgaagg ttttcttctt ccactcttca tagtcggaga agttaccctc gtagaacgtc
     4141 actttgcctt catcgccgta gtctaaaata tgggtggcga tacggtctaa gaaccaacgg
     4201 tcgtgcgaaa ttaccattgc acagcccggg aactctaaga gcgcattttc caacgcacgc
     4261 agggtttcta cgtctaagtc gttggtcggc tcgtccagta acaacacgtt accgccacgt
     4321 tgtagtagct tcgccaagtg taaacgacca cgttcaccgc ctgaaagctc gcccacacgt
     4381 ttttgctgat ctacgccttt gaagttgaaa cgccccacat aagcacggct tgggatttca
     4441 aagttaccaa tcgtgagaat atcctgcccg ttcgacacct cttcccacac ggttttctta
     4501 tcgtccatcg catcacggaa ctgatcgacc gatgccatta ccaccgtttc accaagcacg
     4561 attgaaccag aatccggctg ttctttacca gaaagcatac ggaacaaggt tgatttaccc
     4621 gcaccatttg ccccgataat cccgacaatc gcccccttcg gaatagcgaa cgacaagtcg
     4681 tcaatcaaag tgcgatcgcc gtaagattta gtcaggtttt gtacctcgat cactttatca
     4741 cctaagcgtg gacccggtgg aataaagagt tcgttagtct cgttacgttt ttgatattcg
     4801 cctgagttaa gctcttcaaa gcgtgccata cgagccttac ttttcgcttg gcgacctttt
     4861 ggattttggc gtacccattc caactctttc tcaatcgatt tttgacgagc cgattccgcc
     4921 gcttgctctt gtgccaagcg tttttctttc tgctccaacc aagaagagta gttaccttcc
     4981 caaggaatgc cttcaccacg gtcaagctct aagatccagc ccgcaacgtt gtctaagaag
     5041 taacggtcgt gggtaattgc cactacggtg ccttcgtagt cgtggaggaa acgctccaac
     5101 cacgccaccg attccgcatc taagtggttg gtcggctcat ctaacaataa catatccggt
     5161 ttttccagca acagacggca aagtgccaca cggcggcgtt caccccctga taaatgctcg
     5221 atttttgcgt cccaatccgg cagacgtaac gcatcggcag cacgctctaa ctggttttga
     5281 aggttatggc catcgtgggc ttgaataatc gcctctaatt ccgcctgttt tgccgctaat
     5341 ttgtcgaaat cggcattctc atcagcatac atcgcataga cttcatcaag ctgggttaag
     5401 gcgtttttta cttccgcaac cgcttcttcc accgcttcac gcacggtttg ctgtggggca
     5461 agtttcggtt cttgtggaag atagccgatt ttaattcccg gttgtggacg agcctcgccc
     5521 tcgaactctt tatctacgcc cgccataatg cgtaaaagcg ttgatttacc cgccccgttt
     5581 aagccgagca ccccgatttt cgcccccggg aaaaagctca gggaaatatc tttaagaatg
     5641 tgacgcttcg gcggcacgac tttgccgaca cggtgcatcg tatatacaaa ttgagttgac
     5701 attggttgta ttcctcacaa aaaaattcgc cttattttac ttgaatttac agccaaaata
     5761 tagggtggtt ttggcttttg gtaaagtaac cttttccaat agagatgtta tttgaggctg
     5821 catagtacta tgcatttctc ttaccttgac aggtaagaga aacaaatcct gaaggaaaaa
     5881 aattttaagg aagttattct atgcaatatg tatgtccaaa aacactcaaa ttattcaaca
     5941 gcattgttgg ttgttataag ggagaagatt aattctctac ctcatcaagg cttgatttta
     6001 gatttaatat ccatttctaa agatgattta gatgatattt tggagggtaa tactgatatg
     6061 aata
//
LOCUS       DANLUT010000139         5893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLUT010000139 DANLUT010000000
VERSION     DANLUT010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            148..1239
                     /gene="ulaG"
                     /locus_tag="PXB38_002049"
     CDS             148..1239
                     /gene="ulaG"
                     /locus_tag="PXB38_002049"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL5354327.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVVAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1323..2069
                     /gene="ulaR"
                     /locus_tag="PXB38_002050"
     CDS             1323..2069
                     /gene="ulaR"
                     /locus_tag="PXB38_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL5354328.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILASTVFTAHKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQELRNRGLDIILA"
     gene            2127..2987
                     /locus_tag="PXB38_002051"
     CDS             2127..2987
                     /locus_tag="PXB38_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL5354329.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQEGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2984..3703
                     /locus_tag="PXB38_002052"
     CDS             2984..3703
                     /locus_tag="PXB38_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL5354330.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3951..>5893
                     /locus_tag="PXB38_002053"
     CDS             3951..>5893
                     /locus_tag="PXB38_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5354331.1"
                     /translation="MKNRNYFVAIATILALSPEVNATELSDQLASRTRYYPSATDSYY
                     SYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTKVYTTHNGRT
                     TVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIVDNKPITDTQ
                     PNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWNDRSRGYNIDD
                     PNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTAPASATHGIE
                     VAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRGARIFNQSYG
                     IPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRGDLDPSLQAG
                     LPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVTAMGDYIFNL
                     GGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGAPGVDDVYGW
                     GLLNIEKATNGPARFDKRLALADNVTVNIPNGSYEFSNNINGDAGLVKNGQGELILSG
                     ASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEGTVVNQGYST
                     IKRAYVASAQSTLVSDLGSNLNV"
BASE COUNT         1828 a         1110 c         1320 g         1635 t
ORIGIN      
        1 gttattaaaa taaattttta ccagtaaatc ataaaaaatt agacataggt cacatttttg
       61 aataaaaaag atgtacaaat ttttgtgatt gtttatgatt ggttttgatt gcattgttct
      121 tattttagcg taaatcagga gactattatg agcaaaattc aagaaatcac tcgtgaaagc
      181 tggatccttt caactttccc tgaatggggt acttggttga atgaagaaat tgaagaagaa
      241 gttgtaccgg aaggcaattt tgcaatgtgg tggctaggct gtgtcggtgt gtggattaaa
      301 accccagctg gtgcgaatat ctgtatggat ttatggtgcg gtcgtggtaa atccaccaag
      361 aaagtaaaag atatggtgcg tggtcatcaa atggcaaata tggcaggggt gcgtaagctc
      421 cagcctaatt tgcgggctca accgatggtg ttagatccgt ttgcgattaa cgaagtggac
      481 ttcattctcg cttctcacta tcactcagac catattgatg taaacgtggt agcggctatt
      541 tgcaataatc cgaaattaga ccacgttaaa tttgtcggcc cgtggcactg tgcagaatta
      601 tggaaaaaat ggggcgtgcc ggaagagcgt atcattgtgg taaaaccggg cgatgtcgtg
      661 aaattaaaag atgtagaaat tcacgcccta gattcatttg accgtacttg tttagtgacc
      721 ttaccggtag aaggtgcaga agaacgtggc ggagaacttg caggcttatg cccatcagat
      781 gaagaaatgg gacgcaaagc tgtgaactat gtgttcaaaa ccccgggcgg tacgatttat
      841 cacggtgcgg attctcacta ctcaatccaa ttcgctaaac acggtaagca atttgatatt
      901 gacgtagcac tgaataacta tggcgaaaac ccggttggta ttgcggataa aatgacttca
      961 gttgatttat tacgtatggc ggaatgctta cgctgtaaag tgattattcc agttcaccat
     1021 gatatttgga caaactttat ggcaagtacg caagaaatta ttgatttatg gcgtatgcgt
     1081 aaagatcgct tacaatacca attccaccca tttatttggg aagtgggcgg caaatatgtt
     1141 tacccacgtg ataaagactt aattgaatat catcaccctc gcggctttga tgactgcttc
     1201 gagcaagagc caaatattca atttaaatcc atgctatagg tgagcagtcg ccactctcac
     1261 tggagagtgg cgttttagca agttcattat ggagcagtag tgattagtaa tgggataaag
     1321 tagtgaacga aagttataga cacaaagagt tattagccct gttggaagaa cggaaagcac
     1381 tttcaacagc agatattatg cagttgttaa atatttctcc ggcaacagca agacgtgata
     1441 tcagtaaatt agatggtcaa ggtaaattaa aaaaggttag aaacggagca gaagcaattc
     1501 tagcttctac agtttttaca gcacacaaaa taactaacaa tgcgcaggag aaacgtagaa
     1561 tagcggaagc cgccggtcgt ttatgtaaag atggggaaag tcttattctg acgtgtggtt
     1621 ccacaatgga aatgctcggt gaagtattat gtggtagaaa attgcaaatt attaccaatt
     1681 atctaccgct tgcaaaccag ttgattgcag gttgccacga tgatgtagtg attatgggtg
     1741 ggcaatataa taaacataaa aaagtgatgc tctcaattaa cacccaaaat gagatgactt
     1801 atgccgctac cacaatgttt accagtggca aaggcttaac cagcgaagga ttatttaaaa
     1861 ccgatatgat tattgccaat gccgagcaac aaatggcaaa gcacgcagaa cgttatgtgg
     1921 tgttattgga tagcaccaag ctcggtaaaa aagtcggtat gctgtttaaa gaattcgata
     1981 aaattgattt attgattacc ggcaaagaag ctgatccgac aattatccaa gaattgcgaa
     2041 atagaggctt ggatattatc ttggcttagc ctgtacaagc ggtcaaattt aatcaaaatt
     2101 ttacttatga tgttcaaggg aaaactatga gaaaacataa acttggtatt tacgaaaaag
     2161 ccttgccgaa aaacatttcg tggcaagacc gcctttctat cgccaaagtc tgcggttttg
     2221 actttgtgga aatgtcgatt gacgaaacgg acgaacgctt agcccgcctt gattggagca
     2281 aaaaagagcg tgccaagctg gtgaaaacca tcatcaacac cggcgtgacc attccgtcaa
     2341 tgtgcttgtc cggtcatcgc cgtttcccgt ttggttcttg tgatgaagcg acccgccaaa
     2401 aagcctatga aattatggaa aaagccattc aactggcggt agatctcggt attcgcacca
     2461 ttcagcttgc cggctatgac gtttattacg aagagcagga cgaaggcacg attcaacgct
     2521 tccaagaagg tttagaatgg gcggtagagc tggcggcaag caaccaagtc accattgcgg
     2581 tagagattat ggacacccaa tttatgagtt cgatttcccg ctggaaaaaa tgggacgaga
     2641 tcatcaaatc accgtggttc accgtgtatc cggatttagg caacctctca gcgtggaacg
     2701 acaacgtagc ggaagagctg aaactcggca tcgacaaaat ctcagctatt cacttaaaag
     2761 acacttacaa agtgactgaa acctgcaaag gtcagttccg tgacgtacca ttcggtgacg
     2821 gttgcgtaga tttcgccgct tgttttaaaa cccttgccga gctgaattac cgtggcgcat
     2881 tcttaattga aatgtggacg gaaaaagccg aagagccgat tactgaaatc atcaacgccc
     2941 gccgttggat cgaacaaaaa atgcaagaag gaggatttac cctatgacgc aattaactga
     3001 attaacccct gcattacaag ccttaagaga gcgtgtgtta aaagccaatt tagaattacc
     3061 gaagtatggc ttggtaactt tcacttgggg taacgtaagt gaaatcgacc gtgagaccgg
     3121 tttagtcgcc atcaaacctt ccggcgtaga atacgatgcg atgacggtgg aagacattgt
     3181 attggttgat ttacaaggta atcgagttta cggagataaa aaaccgtctt ctgatacaga
     3241 aacgcactta gaactttatc gccaattcac tgatattggc ggtgtggtac acactcactc
     3301 tcgcaatgct gtaggttggg cacaagcagg gcgtgattta ttggcacttg gcaccactca
     3361 aggcgattat ttctacggtg cgattccttg tactcgcaaa atgaccgcag aggaaattgc
     3421 cggcagttat gagctggaaa ccggaaaggt gattgtcgaa actttccgaa ctcgaggtat
     3481 tgaaccgaaa gcagttccag gtgtgttggt acattcacac ggtccattta cctggggaaa
     3541 agatggacac gatgctgtgc ataattctgt ggtattagaa gaggtggctt acatgaattt
     3601 tattagccat caaattcgcc cacaaattgg cccaatgcaa caggaattat tagataagca
     3661 ttatctgcgt aagcatggtg caaatgctta ttatgggcaa tagctaataa cctaaaaatt
     3721 attttccaaa ttatcaacag ctttcgaggg gctttctata atcggaatag ctcctcagtc
     3781 tgtttgagtt tatggataga tccacaaata attaccattt tccttttctt gattttaatt
     3841 ttgatttttg ttctaatctc tgcctcttgt ttttacaagt ctattaagga tccgtagtag
     3901 atttgaaata aacaagagta tctttgtatt tattagaagg aaaccaaaag gtgaaaaata
     3961 gaaattattt tgttgcaata gcaacaatat tagccttatc gccagaggtt aacgcaactg
     4021 aactttcaga tcagcttgca agtagaacaa gatattatcc ttccgccacg gatagttatt
     4081 atagttacta taaatatgca ccgatttatt cgggctacta tacatcgaat agccgtaatg
     4141 gttattcgtc gtggtattat ccaggtagca atgcaggtgt aacaaccaga actgtttcga
     4201 caacagttaa tggcattaca gttacaaaag tttatacaac gcataatggg agaacaaccg
     4261 ttcgtaccac ttatgctcct gctgtgaaca aaccaattgt aaataaaccg acaccgattg
     4321 ccaataaacc cgttgtagat acgccaactc aaccggttat tgatgccaac ccaattatgg
     4381 atccgccagt ccaaccaata gttgataata aacccatcac tgatacacag cctaatccaa
     4441 ttacagataa caaacctgtc attgaatcgc caattgatga cacccgtcca gttatcatta
     4501 ggcctacaac accggtaaat cttcatcctg aacctgtagc tgttggtgta cccaatgtag
     4561 gtattcgatg gaatgaccgc tctcgtggtt acaacattga tgatcctaat aacaaacaaa
     4621 atgttaagtt aactggtgaa ggtgttaaag tcggtatctt agatagtggt tttaaaaact
     4681 atttaatgca ggacgatata ctcaaaaaat ttggtaatcg cgctgttatt attgaaacag
     4741 ggcgtactgc cccggcttct gcaacacatg gtattgaggt cgcagaaatg gttgggggag
     4801 ggaactctcg caatggagta gcgtctaagt caacgttatt acttgcggat attaccaaaa
     4861 caacaaatgc gggtacagga ttatccgcaa cagctccaat ttattatgac ttatggaata
     4921 ggggagcccg tatttttaac caatcatacg gtattccaaa gcctcttact tattttaata
     4981 acaatagaaa ttctagctat tactatttac accaatttga tggtaatgtg ttgcaattct
     5041 ataaggataa agtaaaagag gggggcttat ttgtctgggc tgcggggaat aaccgtggtg
     5101 atcttgatcc atcactccaa gctgggttac ctcattatga agctgacttg gaaaaaggtt
     5161 ggatttctgt tgttgcggta gcaaccagaa ctaatcaggg attgggtaac tttgaatgga
     5221 gcaatttatt gccatattct caagccggtg tggcaaaaaa ttggaccgtt accgcaatgg
     5281 gtgactacat ctttaattta ggaggtagaa acattattgc tagtggttca tcctttgcag
     5341 ctccagccgt tacgggtaca gcagctctcg tgaaacaaaa atatccttgg atggatggta
     5401 accttatcaa acaatctatt ctctcgacgg caaccgatat cggcgctcct ggagttgatg
     5461 atgtatatgg atggggttta cttaatattg aaaaagccac taatggccct gcgcgttttg
     5521 ataaacgact cgctttagcc gataacgtga ctgtaaatat tccaaatgga agctatgagt
     5581 tttccaataa tattaacggt gatgcaggct tggtgaaaaa tggccaaggc gaattaattt
     5641 tatcgggtgc tagtactttt gaaggggata caacactcaa tgaaggtgct gtcactatta
     5701 acggtaaaaa atatgtgtct aaagtaaacg tatctccaag tggtacattg gttgtcaata
     5761 ataccacgtt agaaaatggc gtaaataacg agggtacagt tgtcaaccag ggttattcta
     5821 cgattaagag agcttacgtt gcttcagcac aaagtacgct agtgtcagat ttaggttcaa
     5881 acttaaatgt atg
//
LOCUS       DANLUT010000140         5867 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLUT010000140 DANLUT010000000
VERSION     DANLUT010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5867
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..698)
                     /locus_tag="PXB38_002054"
     CDS             complement(<1..698)
                     /locus_tag="PXB38_002054"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354332.1"
                     /translation="MENLKLLTHPWAEKGLKNEIPLNREGSGVTSATATYEDGFPDVT
                     MKPIHEGGKAPSGKDMNGVLYELSTHIVHLNKGCLYPFEMDFCNAIGGYPKGSLLISN
                     DKGKLFISLIDNNTTDFNSENYFGKWDCISTQDLLNSPDGFKFIGQCESIAQLRTIEP
                     TEDQQRILVKSYYAGKNLGGGEFYADFADTTTADNAGTVIVTAGGKRWKRVYSTLNIF
                     DFGVRLDSVNNDAI"
     gene            complement(771..1391)
                     /locus_tag="PXB38_002055"
     CDS             complement(771..1391)
                     /locus_tag="PXB38_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2612 domain-containing protein"
                     /protein_id="HDL5354333.1"
                     /translation="MNKPHLQKTIISQYANSPIMNRIIQFADEYLETKDCFRQFYNIY
                     WDIDTAEGVGLDFWGVVLGLSRFVEINDQTTFQGSSIASTELKDKVNPTSYRMNDAMY
                     KSMLFVKAMTNIVYATAPNINKILQILFKERGRAYFVKSGTMTARYVFEFKLLDVEKA
                     IVMTLLPRPTGVLCDFYEPEQLYTWGFNENELAPFGQAAFYIGDKN"
     gene            complement(1388..2584)
                     /locus_tag="PXB38_002056"
     CDS             complement(1388..2584)
                     /locus_tag="PXB38_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5354334.1"
                     /translation="MTIQTNVPSIQFTPQGLILPSEQEILNGVLADFNAAFGGGLSQN
                     LETPQGQLASSIAAIIADKNNQIAWLVNNLDPTYSDGIMQDAIAKIYFVKRKGRVNSF
                     ATCQFVGLPGVTIPKGLVIKDTTNNEWILDEEISILENGTVEGRVIANGVYGAKANTI
                     TKIHQSIIGLDRVTNPQDAVVGTERESRQDFAERYRESVAINAQGMPSAVHANVMKLE
                     GVIDCYVIDNPTNKTVKHGATGYPIKPHSVYVAVRGGNDLDIAKMIWLYSGNGCDFNG
                     NTEIVVTDDTYVTPKPTYYINFMRPLDTPIFFRVKIKSGLVGDYLNEMKEAIKMQFDQ
                     SSHRKIGRIFYAMNYVSSIIKSFPKDYLLDVEVSSDGVNFENKVQLGIDQYPILFSEN
                     IILVEE"
     gene            complement(2581..2931)
                     /locus_tag="PXB38_002057"
     CDS             complement(2581..2931)
                     /locus_tag="PXB38_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354335.1"
                     /translation="MTTLFLHPQRWDLCLDDEGNIAYAKDPYAKAQDVASAIKLFKGE
                     LYYDTEKGIPYFDETLGKKQSLALYQYRLEQAALRVKGVVSAKANIESGASREVTGSV
                     TFTDEQNRQMSVKL"
     gene            complement(2935..3597)
                     /locus_tag="PXB38_002058"
     CDS             complement(2935..3597)
                     /locus_tag="PXB38_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate protein"
                     /protein_id="HDL5354336.1"
                     /translation="MSNNLGLLKPDQVLGGTGEFEFIISGIVTRIQTVTLVQVKAVNA
                     TGIGPVGTVDVQPMVAQLDGSGKAYAHGVIHNIPYFRLQGGSNAVIIDPKVGDIGMCG
                     FCSRDISSVKVNKAPSNPQSRRKFDYADGLYFGGFLNGVPSQYLFFKDSGIELVSTGE
                     ILIKGTSIKLDAPVETTSTVNAAGDITDNAKSGGKSMKNMRQVYDTHTHNGGPQPDRK
                     TG"
     gene            complement(3587..4474)
                     /locus_tag="PXB38_002059"
     CDS             complement(3587..4474)
                     /locus_tag="PXB38_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354337.1"
                     /translation="MSSFTKKKLKFSFVLGQQDPHFDKDENNTVIVKGLRASVTIQSG
                     HGAPMPSAKLMIYGLGQKVMNKLAKIRWNTDDAKLNYVRVEASQDGGESYILVYEGVI
                     QYAYPNYGSSPEVILTIDSTSALQHKIRPVPPLSFNGEVDVASAVAQICQKMSMRFEN
                     NGVTEKVSNPYLPETALDQVFKLCDAINAKAVVEFNTIAITPQGQARDILVPVISPSS
                     GLIGYPTPTITGTRFQCLFDPVIRFQGLVEIKDSLVEICNGKWLVVGLSHYLESEVSG
                     GRWLSEVDAIYPGGVKIVK"
     gene            complement(4474..4770)
                     /locus_tag="PXB38_002060"
     CDS             complement(4474..4770)
                     /locus_tag="PXB38_002060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354338.1"
                     /translation="MDLYHIPLKAVANQRVRCQIEGQELEITLHTRLEEQLYISIKCN
                     GVAVVHNRICQDLTPLIDVGYLPMKGVLFFKDMQGRQAPHCKELGKRYRLFWGA"
     gene            complement(4773..5480)
                     /locus_tag="PXB38_002061"
     CDS             complement(4773..5480)
                     /locus_tag="PXB38_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354339.1"
                     /translation="MTWSSVGIPSVPGLPKNIGDAAIKFGGALGINLLFGNYWGVFDQ
                     NGIPLLLADNVKSVKYQSRSKISTAPLEKGSFAAYNKVIEPYTVNVVMTKGSGGVKER
                     GAFLALVDAFANSTDLFMVITPEAIYPNCNIVGYDYVREAGDGARLIKVNLHLQEIRE
                     VEVEYTKTKAESAEAVQEQGNVTPEKVNTEAGNTSVLFDIGQKIGDMKETLKTEGAGA
                     VIDKLKDGLMNAVGMGG"
BASE COUNT         1651 a         1333 c         1004 g         1879 t
ORIGIN      
        1 ttgatggcat cgttattcac gctgtctaat ctgactccaa agtcaaagat attgagtgtt
       61 gaataaactc gtttccatcg tttgccacca gccgtcacaa tcaccgtgcc ggcattgtct
      121 gcggttgtgg tatccgcaaa atcagcataa aactctccac cgcctaaatt tttcccagcg
      181 tagtaggatt taaccaaaat gcgttgttgg tcttctgttg gctcgatggt gcgtaattga
      241 gcaatagatt cacattgacc gatgaactta aatccgtcag gagaattaag taaatcctga
      301 gtagaaatgc aatcccactt cccgaagtaa ttttcggaat tgaaatcagt tgtattgttg
      361 tctatcaagc taataaatag ctttccttta tcattgctaa ttaatagtga accttttgga
      421 tatcctccta tagcattaca aaagtccatt tcaaatggat aaaggcaacc tttattaagg
      481 tggacaatat gtgtcgataa ctcatataac actccgttca tatccttacc cgaaggtgct
      541 tttcctcctt catgaatagg cttcatagtt acatccggga aaccatcttc gtaagtcgcc
      601 gtggcggatg taactcctga accttctcga ttcagtggta tttcattttt taatcccttt
      661 tcagcccaag gatgcgtgag tagctttaag ttttccatga tttctccaac aaaaaaccgt
      721 ttatggaata agaaccataa acggttaagt taatgaataa tttaatttgt ttagttttta
      781 tcgccaatat aaaaagcagc ttgcccgaat ggagctaact cattttcatt aaatccccaa
      841 gtatataatt gctctggctc ataaaagtca caaagcacac cggttggacg aggtagtaat
      901 gtcataacta ttgccttttc tacatccagc agtttgaatt caaaaacata cctagccgtc
      961 attgttcccg acttaacaaa gtaagctcga cctctttctt taaatagtat ctgcaggatc
     1021 ttattgatat tcggtgctgt tgcatacaca atattcgtca ttgctttaac aaaaagcatt
     1081 gacttataca ttgcatcatt catcctgtag ctagttgggt taactttatc ctttagctca
     1141 gtcgaggcta tactggaacc ttgaaaggta gtttggtcat taatttctac aaaacgagat
     1201 aacccaagca ccactcccca aaagtcaagt ccaacacctt cagcagtatc aatgtcccaa
     1261 taaatattat agaactgcct gaagcaatct tttgtctcaa gatattcatc agcaaattga
     1321 atgatacggt tcataattgg actgtttgca tactgactaa tgattgtttt ttgtagatga
     1381 ggtttattca ttcttccacc aaaattatat tttccgaaaa aagaatgggg tattgatcta
     1441 tccccagctg aaccttattc tcaaaattaa caccatcact acttacttca acatcaagca
     1501 agtaatcctt aggaaaagat ttaatgatcg aagaaacgta attcattgca taaaaaattc
     1561 taccaatctt gcgatgagaa gattgatcaa attgcatttt aattgcttct ttcatctcat
     1621 tgagataatc gccaaccagc ccagacttaa tttttaccct aaagaaaatt ggcgtatcca
     1681 aaggtctcat gaaattgatg taatatgttg gcttaggagt aacgtaagta tcatcagtga
     1741 ctactatttc agtattacca ttaaagtcac atccattacc agaatataac catatcattt
     1801 ttgcaatatc taaatcattt cctcctctta cagcaacata aacactatga ggttttatag
     1861 gatatccagt tgctccatgt tttactgttt tgtttgtagg attatcaata acatagcaat
     1921 caatcactcc ttctaatttc attacattag catgcacagc agatggcata ccttgagcat
     1981 taatagctac gctttctcta tatcgttccg caaaatcctg tctgctttcc cgttctgtac
     2041 caacaaccgc atcttgtggg ttggtaacac ggtctagccc gataatcgat tgatgaattt
     2101 ttgtgatcgt attagctttt gcaccataaa caccgttagc aataacacgt ccttccacag
     2161 tgccgttttc taatatgctg atctcttcat ctaatatcca ttcattattg gtggtatctt
     2221 tgataactaa cccttttgga atagttacac ccggtaaacc aacaaattga caggtggcaa
     2281 aagagttcac tcgccctttt cgttttacga aataaatttt agcgatagca tcttgcataa
     2341 tgccgtcgga ataagtcgga tcaagattat tcactagcca cgcaatttga ttatttttat
     2401 cagcaataat cgcagctatc gagctggcaa gttgtccctg tggtgtttct aagttttggc
     2461 ttagtccacc accaaatgcc gcattaaagt ccgccagcac accgtttaga atttcttgtt
     2521 cgctcggtaa aattaagcct tgcggtgtaa actgaattga tggcacattc gtctgtatcg
     2581 tcatagtttc acgctcatct gtctattttg ttcatcggta aaagtcacag agccggtcac
     2641 ttcccgactg gctccgcttt caatatttgc tttggcagaa accactcctt taactctgag
     2701 ggctgcttgc tctaagcgat attgatataa tgctagagat tgcttcttcc caagtgtttc
     2761 atcaaaataa ggaatccctt tctccgtgtc ataatacaac tcgcctttaa acagctttat
     2821 ggcacttgcc acatcttgag ctttagcata aggatctttt gcataagcga tattcccctc
     2881 atcatcaagg cataaatccc acctttgcgg gtgtaaaaat aacgttgtca tacattaccc
     2941 cgttttccgg tcaggttgtg gcccaccatt gtgcgtgtgc gtatcataaa cctgtcgcat
     3001 atttttcatt gatttacctc ctgatttggc attatcggta atatctccgg cagcgtttac
     3061 tgttgaggta gtttcaacag gggcatctaa tttgattgat gttcctttta tcaaaatttc
     3121 accggtagaa accaactcga tgcccgaatc tttgaaaaag agatattggc tcggcacacc
     3181 gttaagaaaa ccgccaaaat acaaaccgtc tgcataatca aattttcgtc tgctttgtgg
     3241 atttgaaggg gctttattta ctttcacaga ggaaatatca cgactgcaaa aaccacacat
     3301 tccaatatcg cccactttcg gatcgataat aaccgcattg ctgccaccct gaagtctaaa
     3361 ataagggata ttgtggatta caccgtgtgc atacgctttg ccactaccgt ccagttgtgc
     3421 caccattggt tgcacatcta ccgtgccgac cggtccgatg ccggttgcat ttactgcttt
     3481 gacctgaact agcgtgactg tttgaattcg agtcacaatg ccggaaataa taaattcaaa
     3541 ttcgcctgtg ccacctaaaa cttgatcggg ctttagtaaa cctaaattat ttgacaattt
     3601 tcacacctcc ggggtaaatg gcatcgactt ctgataacca acgccctcct gatacttcac
     3661 tttctaaata atggcttaat ccaacaacca gccatttgcc attacaaatt tcaactaaac
     3721 tgtctttaat ttccacaagc ccttggaagc gtataacagg atcaaataaa cattgaaacc
     3781 ttgtgccggt aatggttggg gttggatatc caattaatcc gctactcggc gaaataacgg
     3841 gaactaaaat atctcttgct tgaccttgcg gcgtgatagc aatcgtatta aattccacga
     3901 ccgcttttgc attgatggca tcacataatt taaaaacttg atctaaagcg gtttcaggca
     3961 agtaagggtt gctcactttc tctgttacac cattattctc aaatcgcata ctcatttttt
     4021 ggcaaatttg agcgaccgct gaagccacat caacttcacc gttaaaactt aatggcggaa
     4081 ccggtctaat tttgtgttgt aaagctgatg tactatcaat cgttaagatc acctcagggc
     4141 ttgaaccata attcggatag gcatattgaa taacgccctc ataaaccaat atatagcttt
     4201 ctcccccatc ttggcttgcc tctactctga cgtaattcag cttagcgtca tcagtattcc
     4261 agcggatttt cgccaattta ttcattacct tttgaccaag cccgtatatc attagctttg
     4321 cactcggcat tggtgcaccg tgtccgcttt ggattgtgac actcgccctc aatcccttaa
     4381 caatcaccgt attattttca tctttgtcaa aatgcggatc ttgctgtcca agcacaaaag
     4441 aaaacttcag ctttttcttg gtaaaacttg acattacgcc ccccaaaaca agcggtatct
     4501 tttgcctaat tctttgcaat gcggagcttg ccgcccttgc atatctttaa aaaacaaaac
     4561 gcctttcatc ggcaggtaac ctacatcaat taaaggcgtt aaatcttgac aaattcggtt
     4621 atgcaccacc gctacaccgt tgcattttat gctgatataa agctgttctt ccaaacgggt
     4681 atgcaaggtg atttcgagtt cttgtccctc aatttggcag cgtactcgtt gatttgccac
     4741 cgctttaagt ggaatatgat ataagtccaa aatcaacctc ccattccaac ggcgttcatc
     4801 aagccatctt tcagtttatc aataactgca ccggccccct cggtttttaa tgtttctttc
     4861 atatcaccga tcttttgtcc tatatcaaaa aggactgaag tattgccggc ttcagtattt
     4921 actttctctg gcgttacatt cccttgctct tgcacagctt ctgccgattc tgctttagtt
     4981 ttcgtgtatt ccacctctac ctctcgaatt tcctgcaggt gtaaatttac tttaatcaac
     5041 cttgcaccgt ctccggcttc acgcacatag tcataaccaa cgatattgca gttcgggtaa
     5101 atagcttcag gagtgatcac cataaataaa tcagtgctgt tggcaaaggc atcgacaagg
     5161 gctaaaaatg ctcctcgttc tttcacacca ccactgcctt ttgtcattac tacattcacg
     5221 gtataaggct cgatcacttt gttgtaagcg gcaaatgagc ctttttcgag tggtgcggta
     5281 gaaatctttg aacgactctg atatttcacc gatttcacat tatcagcaag taaaagggga
     5341 atgccgtttt gatcgaacac tccccaataa ttgccaaata ataaattgat acccaacgca
     5401 ccaccgaatt ttattgccgc atcaccgata tttttcggca accccggcac actcggtatg
     5461 ccgacagaac tccaagtcat atttgctcct atttcactct aacagggttg ggtggtcttt
     5521 ctggaggaca ccaacaacca tttgcttttg gcattttcca atgtctaaac ccattaagaa
     5581 gaatgaaagg tataacaatt ttattgtgaa ttgggcattg atatgtgcca tcgctattct
     5641 tcttcaatct actcatattt gctccaataa aaaaccgcct gcatttctac aaacggttag
     5701 ttagtcaaga gtggtaacta aatttgcgtt ttatcttcaa aagtatttaa tactttttga
     5761 tgatgcttcg gttttgtagg tttagtcatt tacctctgaa gaactttatc aatttgctta
     5821 taacagacga tttcttgttc tctttacttt tgtttagaat atttaag
//
LOCUS       DANLUT010000141         5862 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLUT010000141 DANLUT010000000
VERSION     DANLUT010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5862
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(364..879)
                     /locus_tag="PXB38_002062"
     CDS             complement(364..879)
                     /locus_tag="PXB38_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5354340.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
     gene            1034..3862
                     /gene="uvrA"
                     /locus_tag="PXB38_002063"
     CDS             1034..3862
                     /gene="uvrA"
                     /locus_tag="PXB38_002063"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL5354341.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRMMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNAV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFLLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPVPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(3954..5687)
                     /gene="dauA"
                     /locus_tag="PXB38_002064"
     CDS             complement(3954..5687)
                     /gene="dauA"
                     /locus_tag="PXB38_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL5354342.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
BASE COUNT         1708 a         1198 c         1351 g         1605 t
ORIGIN      
        1 gccgcccata aagcgtgtcg gttcgagtcc gaccactggc actactctaa tatcttttct
       61 tatttactat taagaatttc tctattatct tcctatatca atttttctca aaatattgta
      121 tttataaacc cgtatagatg ggaactttag ccgtttatgt gagaaatggg gcaataataa
      181 atctgtcaat aagttactta ttaatcgaat gaaaagtgga tttattaatt aatagggaac
      241 acttattact tggaagtgtt ccctattatt ttgagtaagg taggggcgct ttatatgagt
      301 agctttttat ttcatcgaaa tgcggtgtat ggaacccatg agctacttaa gtcaatactt
      361 tgattagaac ggaatatcat catcaaaatt gttcattgcc ggctcaggct gtggtgccgg
      421 tttagattgc ggtgcagcac tttgggtttg gttgtaacca taattgctgt tgccttgatt
      481 gtagctatta cccgcaggag cagaatttcc ccaaccgcct tgctgaccgc ccatatcatt
      541 accttgacgg ctaccgagca tttgtagcac atcgccttga atttcggtgg tgtaacgatc
      601 ttgcccgttt tggtcttgcc atttacgggt ttttaaacgt ccttctacgt aaacttgaga
      661 gcctttacgt aaatattgcc cgcatacttc tgcttgacgg cggtagaata caatacgatg
      721 ccactcggtt acttcacggc gttcaccggt gtttttatcc gtccagcttt ctgaggttgc
      781 cacactaata tttgcaaccg cttcgccatt tggcattgta cgcatttcag ggtcgttacc
      841 taaattaccg acaataatta ctttattgat accagccata aaatcctctg tttgataaat
      901 taaactaaaa tttgctaagt attctacctg aaaatccaaa agatgaacac caaaaaactg
      961 atattttgta cagttttatt aaaatatgcg ataatgatcg aaaattgaga aaatagcact
     1021 ggacattaaa aatatgcaac atatcgatat tcgtggagca agaacacaca acttaaaaaa
     1081 catcaattta accttgccga gagataaatt cattgtaatt accgggcttt ccggctcggg
     1141 caaatcgtct ctggcgtttg atacgctcta tgcggaagga caacgccgtt atgtagaatc
     1201 actgtctgca tacgcccgcc agtttctctc cttaatggaa aagcctgatg tggatcatat
     1261 tgaagggctt tcccctgcga tttcgattga gcaaaaatca acctctcaca acccacgttc
     1321 gaccgtagga acggtaacgg aaattcacga ctatttacgt ttattgtttg ctcgagtggg
     1381 cgagcctcgt tgccctgacc acgatgtgcc attggctgct caaactattt cgcagatggt
     1441 ggatcgagta ttggaagaac cggaaggaaa acggatgatg ctacttgccc ctgtggtgaa
     1501 agagcgtaaa ggcgaacacg taaaattatt ggaaaatttg accgctagtg gctatttgcg
     1561 ggctagaatt gacggtgaaa tttgcgattt atccgaccca ccggcattag aattacagaa
     1621 aaaacacacc attgaagtgg tggtggatcg ctttaaagta agggctgatc tagccacccg
     1681 tttggcggaa tcttttgaaa cagcgttaga tttatccggc tctaccgcaa ttattgcaga
     1741 tatggacgac ccaaatgccg aagaaattgt gttttcgtcc agctttgctt gtccgcattg
     1801 tggttactct ttacacgaat tagaaccacg ccttttctcg tttaacaacc cggcaggtgc
     1861 ttgcccgact tgtgatggtt tgggcgttga gcagtttttt gatgccaaaa aagtagtgca
     1921 aaatgaagag gtttcattag ccgccggtgc gatcaaaggc tgggatcgcc gcagtttcta
     1981 ctattttggc ttattaaaag ccgttgccga gcattatggc tttgatttag aaaccccatt
     2041 cgggcagcta ccgaaaaaat atcaaaacat tattttaaac ggcactaaag aagagattga
     2101 gtttgtttat gtcaatgacc gaggcgataa ggtcaaacgt aaacacgctt ttgaaggggt
     2161 gctgaataat atggctcgcc gctataaaga aaccgaatca aacgcggtgc gtgaagagtt
     2221 ggcgaagtat attaataatc gtccttgtat ggattgcgaa ggctcacggt tacgccgtga
     2281 agcccgttat gtattcttag ataaaaccaa tttgccgatg gtttcggaaa aaagtatcgg
     2341 cgaggcatta accttttttg aagagctgaa attagccggt cagaaagaaa aaattgctga
     2401 gaaaatcctc aaagaaattc gtgaacggct acagttttta gtgaatgtcg gcttgaatta
     2461 tctttctctt tcccgctcgg cagaaaccct ttcaggtggc gaggctcagc ggattcgcct
     2521 tgccagccaa attggtgcgg gtttagtagg ggtaatgtat gtgctggatg agccttccat
     2581 cggcttgcac caacgagaca atgaacgcct actgaatact ttggtgcatt tacgcaattt
     2641 aggcaatacc gtgattgtgg ttgaacacga tgaagatgcg atccgagccg cagatcatat
     2701 cgtggatata ggcccgggtg ccggtgtaca cggtgggcaa gttatcgcac aaggtacggc
     2761 agctgaaatt atgcaaattg aggaatctat taccggacaa ttcctctcag gcaagcaaaa
     2821 aattgagatt ccggctcagc gtgtgcctta tgagccaact aaattgctca ccttatcggg
     2881 agcaagtggt aacaacttga aaaaagtgaa attagagatt ccggttggtt tatttacttg
     2941 tatcacgggt gtatcaggtt cgggcaaatc aactttagtt aatgacacac tattccttct
     3001 ggcacagaat gcgttaaacc gagcggaaaa cagcgatgtt gctccttatg aatcgattga
     3061 cggcttatcg cattttgaca aggtaattga tattgaccaa agcccgattg ggagaactcc
     3121 tcgctcaaat ccggcaactt acaccggatt atttacgcca attcgtgagc tttttgccgg
     3181 cacgcaagaa gctcgagcca gagggtataa cgtagggcgg tttagcttta atgtgcgggg
     3241 cggacgttgc gaagcctgtc aaggtgacgg cgtgattaaa gttgaaatgc acttcttgcc
     3301 tgatgtgtat gtgccttgcg atcactgtaa aggcaaacgc tataaccgtg aaaccttgga
     3361 aattcgctat aaaggcaaaa ctattcacca agtgttagag atgacggtgg aagaggcgag
     3421 agaatttttt gcccctgtgc cgatgattgc ccgcaagttg caaaccttga tggacgtggg
     3481 gttatcttat atccgtttag ggcaatcttc tactacgctc tcaggcggtg aagcccaacg
     3541 ggtgaaattg gcgaccgagc tttccaaacg agacacaggc aaaacgctct atattttaga
     3601 tgaaccgacc accggcttgc attttgccga tattaaacag ttactcggcg tgctacatcg
     3661 cctgcgtgat caaggcaata cgattgtggt gatcgaacat aatttagatg tgattaaaac
     3721 cgcagactgg attgtcgatc ttggccctga aggtggcagt ggcggcggtg aaattattgc
     3781 taccggcaca ccggaagaag tggcaaaaga caaacgttct cacaccgcac gcttcttaaa
     3841 agagattttg gctaaaggct aacgttcaac acaagcggtc atattttcgg aaaatgttgc
     3901 aatttgcaaa aagttggaaa atatgaccgc ttgttttata tccggagtta ttcctagtta
     3961 gcctgtctga ttttgtcgaa ggcagattca agatcgctac tgaattgaat ttgcgggatt
     4021 tcgtttaccg ttttttgtga gcggactagc attctcatcg gctgaaattg cacattacag
     4081 agatgaagtt gttgatgtgg caacatatgc tgtacaaagc gggttagggc gtgaatgcca
     4141 ccagcatcta atactgtaac ggcatcgcat tgcagcacaa tatgtttaat ttggtgatcg
     4201 gtatgtacgg ttttattgtg cagatcggca aagagattat cggcggcagc aaaaaataac
     4261 ggaccgctga tccgataaac caacacatcg ttcaaatcgg ttgggtgagc catttcaaag
     4321 gatttagtca tttctgcaat agtacggata aatagcaggc ttgccagtaa cacccctacc
     4381 gtaatggcaa ttaccatatc aaataatacc gtgagggtaa tgcaagtcag taaaaccgca
     4441 atttcatttt tacctgaacg gcgggtaagt tgaatgattt gtggaatatc tgccatattc
     4501 caagctacta ccaataatag tgcagccatt gaggaaagag gcaaatagga aagtgcttta
     4561 gccaaaaaga gtagggcaaa taaaaccaac aaggcgtgaa ccacactaga aatgggggaa
     4621 actgccccgg aacgaacatt ggcagccgat ctcgcaatcg ctgctgtggc ggtaattccc
     4681 cctaaaaatg gcgaggcaat attacctaag ccttgggcta atagttcgtt gttagagtgg
     4741 tgcttggtat ctgtcatatt atcgcacact accgcacata ataacgattc gatagcccca
     4801 agcattgcca ttgaaaaggc agccggtaat aaggcttgaa tggtggttaa gttccaatct
     4861 atccgattcc cctctgcatt cgggagattc caaggtaaca caaattcagg taatacgctt
     4921 gggataccat acccagtggt gccgtcagag agcgtgtagt ggaatgctga gccgatagtg
     4981 gcaacgtttt gtccgaaatg aatcagcagt aatgataaca gcgtgccgat aaagacggcg
     5041 ggtaaatgcc cgggaatagg caaccgtagc ttgtgccaac gagttaaaac caacaatgtt
     5101 acgacaccca ctaaggtgtc agcccaattt atggttggca atgctgaaaa aatagcctct
     5161 agcttgccaa gatagtgttc aggcattttt tcaatgctta agcccagaaa atctttgatt
     5221 tgcaaggtgg cgatcacaat accgatgcca caggtaaaac ccagtgtgac aggtagagga
     5281 atgtattcaa ttaagcgtcc taatcggagt aacgccatca atactaaaat tcctccggaa
     5341 agcattgttg ccatgagtaa tccacttaag ccaaactgct gcgtgacggg gtatagaatc
     5401 accacaaaag cggctgttgg gcctgaaata ttaaatcttg aaccgcctgt tagggcaatc
     5461 acaatcccgg caacaatcgc cgtatataaa ccgtgctgtg gtggcacacc gctggcaatc
     5521 gccaacgcca tagataacgg aatagcaata acgccaacgg ttaagcctga aataatatct
     5581 ctgattaaat gttgtttacc ataacctgca ttgagagcat cttttaatgc actaaaaggc
     5641 ttgacggcaa gaaaagcatt tttagttaaa aaccatttat ttaacataga atgttcgagt
     5701 gaagagaatg tttcgcttat tttactgcaa tgaataaaat taaatttgag ctaacgcaag
     5761 aaaaagcagg aaagacgaaa tatgttggag acaagcggtt gttttaggcg aaaaatttgc
     5821 aaatacaaat aattagctga ttttattttg aaaatagcgt aa
//
LOCUS       DANLUT010000142         5774 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLUT010000142 DANLUT010000000
VERSION     DANLUT010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5774
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            8..643
                     /gene="lexA"
                     /locus_tag="PXB38_002065"
     CDS             8..643
                     /gene="lexA"
                     /locus_tag="PXB38_002065"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL5354343.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            735..1415
                     /gene="mutH"
                     /locus_tag="PXB38_002066"
     CDS             735..1415
                     /gene="mutH"
                     /locus_tag="PXB38_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL5354344.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     TWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            1504..2235
                     /locus_tag="PXB38_002067"
     CDS             1504..2235
                     /locus_tag="PXB38_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL5354345.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAVVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            2361..3398
                     /gene="nagZ"
                     /locus_tag="PXB38_002068"
     CDS             2361..3398
                     /gene="nagZ"
                     /locus_tag="PXB38_002068"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005711660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL5354346.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFSLLAQTQEHALQLARETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGKDPYTILPIAEAFIDGMLEMGMATT
                     GKHFPGHGYVLADSHLETPFDDRAKEVIFNHDILPFKQLISKGKLSAIMPAHVVYTEC
                     DNQPASGSIYWLKDILRKQLNFNGVIFSDDLGMRGASFMGNVVERTEKAIQAGCDLLL
                     LCNQPEGVVQVLDGLKYQPTQIQKARHLSLMKRKTVTWRELENSKAYQQAQARLTALQ
                     NHWLAWKETNA"
     gene            3523..4104
                     /locus_tag="PXB38_002069"
     CDS             3523..4104
                     /locus_tag="PXB38_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDL5354347.1"
                     /translation="MQNKTEILPLVASPISHFRNKAKMVVSGSVERPILGILKDQHDP
                     QSGVDLTDCLLYPASFYSLFPILKDFIGRAGLVPYNIKKKKGELKYILITESQYNQSL
                     MLRFVVRSESKRALVERELPHLLEKLPPNSVVSLNIQPQHAAVLEGETEIFLTERKVI
                     EENFNSVPLFIRPQGFFQTNPTVASQLYLTAQQ"
     gene            4354..4902
                     /locus_tag="PXB38_002070"
                     /pseudo
     CDS             4354..4902
                     /locus_tag="PXB38_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603167.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
     gene            5072..5269
                     /gene="rumB"
                     /locus_tag="PXB38_002071"
                     /pseudo
     CDS             5072..5269
                     /gene="rumB"
                     /locus_tag="PXB38_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617603.1"
                     /note="RNA uridine methyltransferase B; catalyzes the
                     formation of 5-methyl-uridine at position 747 in 23S rRNA;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase"
BASE COUNT         1802 a         1163 c         1135 g         1674 t
ORIGIN      
        1 acttaaaatg cgtaaacatc taactgcccg tcagcaagaa atttttgatt tcgtcaaaaa
       61 ccatattgaa accaccggta tgccaccaac ccgagtagaa atagcccgtg aaatcggctt
      121 taaatcgcct aatgcggcag aagaacactt aaaagccctt gctcgtaaag gctatattga
      181 aatgttatca ggtacatctc gtggaattcg cattttagtc gaagacgaaa accaagctgc
      241 caacgatgaa gatgaaggct taccgttgat tggcaaagta gctgctggca cacctatttt
      301 agcggttgaa cacgttgaaa accattaccc ggtgaatggt gcgatgttta atccaagtgc
      361 tgattattta ctcaaagtaa atggcaattc aatggaaaaa atcggtattt tagacggtga
      421 cctattagcc gttcataaaa ccaataccgc tcgtaacggg caagtggtgg ttgctcgggt
      481 aaatgatgaa gtgactgtta aacgcttaga gaagaaaggt gaattaattt acttacaccc
      541 tgaaaacgat gaattaaaac cgattgtagt aaaccctgct caagaatata ttgaaattga
      601 aggcattgca gtaggcgtta ttcgcagtaa tgcttggatg taatttcctc acaagcggtt
      661 attttttagt aattttttgc aaatttctgc ctaaatttga ccgcttgcca gtttagtcta
      721 attaactaag tgcaatgcaa ttatctacat tctctccaac cgagcaggca ttattaagca
      781 aagcggaatg gctggcaggg ttcactttag gtgaaattgc cgagatgctt catattccga
      841 taccagcaga tctgaaacga gataaaggct gggtcggtac tctgattgaa accgctttag
      901 gtgcgaaagc cggcagtaaa gccgaacagg attttgcaca tttaggcatt gagctgaaaa
      961 ccattccggt caatcagaaa ggattaccgc tggaaaccac attcgtcagc cttgctcctt
     1021 taacccaaaa caacggtatt acttgggaaa cctcccacgt taaacataag ctttcccgtg
     1081 tgctttggat tccggttgaa ggggaacgaa agatacccct tgccgaacgc catatcggtc
     1141 agccgatttt atggtctccg actatcacac aagaatcccg cctacagcaa gattgggagg
     1201 aattaatgga gttgattgtg ttaggtgaac tgcataaaat taatgcaacc ttaggcgaag
     1261 tgttacaact cagacccaaa ggtagaaata accgctctat cacctctgct atcaacgcta
     1321 aaggggagat tgttcaatct ctccctcttg gtttctattt gcgtaaacat tttaccgccg
     1381 aaattttaca aaactttttg cattgccccc tttaaatttg tcctcacact ctataagatg
     1441 tcggctttaa ttctatttga tagaaaatat cacttaatcc cttattttta aaaggacatt
     1501 tttatgtttg actggatcac aaatcctgaa gcttgggttg cgctctttac acttaccggg
     1561 cttgaaatcg tattaggcat tgataacatc atcgtcatca gtattctcgt ttcccgttta
     1621 cctattgaac aacgccaatc tgcccgaatt atcggcttgg ggctggcaat gggaacccgt
     1681 attttattgc ttctctcgct tgcttggatg atgcgtttgg tcgagcctct tttcactatt
     1741 ggcaacaatc caatttcagg tagagatctc attctactca tcggtggatt attcctgatt
     1801 gttaaaagtg caatggagct gaaagaatcc atttctgccg aatctcacga agaaaaaagc
     1861 gaatccatta aaaaagccag cttttttatg gtgttaattc aaattgcaat ttttgatatt
     1921 attttctccc ttgattcagt cattactgct gtggcaatgg cagatgatat tccggtaatg
     1981 gttattgcga ttatcattgc agttgcggta atgatgttag cagcgaaaac cattggggac
     2041 tttgtagata acaacccaac tattaaaaat ctcgctttag cgttcttgat tttaatcggt
     2101 attgtattag tcggcgaagg ttttgatatt catattccaa aagcagtggt ttatacggca
     2161 atgggcttct cggttgtggt tgaaatgctc aacataaaaa tgcgtcgtaa ccaagctaaa
     2221 ttagaacaag cataattgct ctgtctcatt tatgccctta atcattcgcc cttgatcaac
     2281 atcaagggct ttttaatgta gaataggcac aacaagcggt catatctgct catttttttg
     2341 caaatagctc aacgaaaatt atgttactga ttgatattaa agataaagaa ctgactcaag
     2401 aagaagtcga aatgctggaa caccctttag tttccgggct aattttattc acccgtaatt
     2461 tctacgacaa agcacaaatt caggcattag tgaaatccat tcgccagcgg gtgaaaaaac
     2521 cgttgcttat tactgtcgac caagaaggcg gtcgggtgca acgcttccgt gaaggcttta
     2581 caaaattgcc tgcaatgcag tcttttagcc tgctagctca aacccaagag cacgcattgc
     2641 aactcgcgag agaaacaggc tggttaatgg cggctgaaat gtttgcattg gatattgatt
     2701 taagttttgc ccctgtttta gatttaggac acgaatgcaa ggcaattggc gatcgatcat
     2761 ttgggaaaga tccatacacg attttgccaa ttgctgaagc ctttattgac ggaatgttgg
     2821 aaatggggat ggcaactaca ggcaagcatt ttcctggtca cggatatgtt ttagctgatt
     2881 cacatttaga aacgcctttt gatgatagag caaaagaggt gatatttaat cacgatattc
     2941 tccccttcaa acaacttatt agtaaaggta aactctccgc tattatgcca gctcacgttg
     3001 tttataccga atgcgataac cagcctgcaa gcggttcaat ttactggtta aaagacattt
     3061 tacgcaaaca actcaatttc aatggtgtca ttttctctga tgatttgggt atgcgaggtg
     3121 ctagctttat gggtaatgtt gtagaacgca ccgaaaaagc cattcaagcc ggctgcgatt
     3181 tattgctgct ttgcaatcag ccagagggcg tcgttcaggt tttagatggc ttgaaatatc
     3241 agcctactca aattcaaaaa gcgcgtcatt tatcattaat gaagcgtaaa actgtcactt
     3301 ggcgtgagct agaaaacagt aaagcttatc agcaagctca agctaggctg accgctttac
     3361 aaaatcactg gctagcgtgg aaagaaacaa atgcctaatc tagctaactg ctcacatttt
     3421 aaacgtggtg attgcacctc ctgccaatga cttgaaaaac cataccagag ccaattagcc
     3481 gataaagaag ccgacctcaa gcggttaatt tctccattta ttttgcaaaa taaaacggaa
     3541 atcttaccgc ttgtagcatc ccccatttca cattttcgca ataaagcgaa aatggtggtt
     3601 tcaggtagtg tggaacgccc aattttaggc attttaaaag atcaacacga cccgcaaagt
     3661 ggggtagatt taaccgactg cctactttac ccagcttctt tttatagctt attccccatt
     3721 cttaaagatt ttattggccg agcaggcctt gtgccctaca acatcaaaaa gaaaaaaggc
     3781 gagctgaaat atatcctaat cactgaaagc caatataacc aatcgttaat gctccgtttt
     3841 gtggtgcgaa gcgaatcaaa gcgagcattg gtggagcgag aattacccca tctgttagaa
     3901 aaattaccgc ctaattcggt ggttagccta aatattcaac cgcaacacgc cgctgtttta
     3961 gaaggtgaaa cggagatttt cttaaccgaa cgaaaagtga tcgaggaaaa tttcaatagc
     4021 gtaccgctat ttattcgccc acaaggcttt ttccaaacaa atccaactgt agccagccag
     4081 ctttacttga cagctcaaca atgagttgaa aatttaccaa taaaaaagtg ttgggatctg
     4141 ttttgtggcg taggcggttt tggtttacat tgtacaaaag cattacaaaa aaaaggattg
     4201 atgttgaatt aactggcatt gaaatttcag catccgcaat tgaaagtgcc acaaaatcag
     4261 cggcaacatt agccttagaa cttgacaaaa tttgactgct atggttaaaa tgaattgcca
     4321 attaacggct tatctatgaa aaagggcagt cttatgaaaa tgaaaacagc attagcaatt
     4381 gcattaggtt ctttattcag cttttcggta acagcagccg aactggaaaa aattaccgtg
     4441 ccgattcaac ttcttgatgt agaaaaaggc aataaagata ttggtacagt agaaattact
     4501 gaatctaaat aatctaaata cggcttagta tttactccaa atctaaaaga tttaacagaa
     4561 ggcttacacg gcttccatat tcacgaaaac ccaagctgtg atgcaaaaga aaaaggtggc
     4621 aagctcacag caggcttagc cgcaggagga cactggaacc ctaataaagc cccacatcac
     4681 ggcttcccgt ggtctgatga tgctcattta ggcgatttac ctgcattaac cgttttacac
     4741 gatggtacat caactaatcc agtattagcc cctcgcttga aaaaattaga tgaaattaaa
     4801 ggtcgttcat taatgatcca cgaaggcggc gataaccact cagaccaccc ggctcctctt
     4861 ggtggtggtg gtcctcgaat ggcgtgtggt gtaattaaat aaaatttgat ctagttagaa
     4921 agtgttggtt taaatatcat tccaacactt ttttatttct agccattacc atataattgc
     4981 ctcctattaa ggagaaatat atgtctataa aagcaaaaaa agaaccccat aaaatacttc
     5041 cagaacaagc aactttttct aagagttcag agtaagattt atctcgctcg attctgcaaa
     5101 atttgcctta aatgaaaaca gcaccccacc tgatttggtg attgtaaacc cacctcgtag
     5161 aggcattggt caatctttag cggaattttt aaacaatttg ggctcaactt atttaatcta
     5221 ttccagctgc aatgcccaat ctatggcaaa agattttgaa tcgtttgtgt aggattgttc
     5281 aaatcatatt cgcaaataca cagttactac gatgtatcca gccaatacat ccattgggat
     5341 tttccgtccg aatttcagac gttctagatc ttacacattc tttcaagttt gtaaagcctg
     5401 aaaatcattt tttattcttg ctttttgtaa aaaaactccc tattatattg ataaggaagc
     5461 gtagccttaa aacgcaaatg tgggttagca catcgtcaat ctgaaactaa tctaggatat
     5521 ataaggccta gcagatggca agcatcagaa aaacttgaaa ctaatctagg atatataagg
     5581 cctagcagat ggcagacatc agaaaaacta acatctccaa acattttaag cccacctttt
     5641 ggtgggctta attatttcgg tggtataaat ataatgactg aaaaagaaag attaaaaaaa
     5701 tatataaatg atatagaaaa tgcggctttc ttctttgaaa ctcacttcat taataaagaa
     5761 gtcgtgtatt ctac
//
LOCUS       DANLUT010000143         5664 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLUT010000143 DANLUT010000000
VERSION     DANLUT010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5664
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1034
                     /locus_tag="PXB38_002072"
     CDS             <1..1034
                     /locus_tag="PXB38_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5354348.1"
                     /translation="FGTKKEKKTFKFSKIESVLLKPIGDAIGDAVVHIAHLEQIKKAL
                     PNVKIAVLVTSRNKLIFSQANVVDMILEDKVSTYLSQRGHWDLYLDFKPTFTTKSIIL
                     DSILKPKFIINFGKKQKSIYNLDTVKNYDFTTVFPKQVHFADYLNYAIFADFLEKNQV
                     NYNLNIPNELSSFANTLWQEKKIRLLLNPQGSMREISTQELSELLSMIDKRYVQHISC
                     LLTNTTNSAEYLSKIKAPFEISLAPNSDILGYCALVNSADIVIAVDGGGVHISCALGK
                     KLLSFYANHPANIARWYPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNHQFA
                     KLIEKYTAC"
     gene            complement(1089..1301)
                     /gene="rpmE"
                     /locus_tag="PXB38_002073"
     CDS             complement(1089..1301)
                     /gene="rpmE"
                     /locus_tag="PXB38_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL5354349.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            1664..3670
                     /gene="tkt"
                     /locus_tag="PXB38_002074"
     CDS             1664..3670
                     /gene="tkt"
                     /locus_tag="PXB38_002074"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL5354350.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            complement(3793..4863)
                     /locus_tag="PXB38_002075"
     CDS             complement(3793..4863)
                     /locus_tag="PXB38_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL5354351.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRGEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(4878..5603)
                     /gene="fadR"
                     /locus_tag="PXB38_002076"
     CDS             complement(4878..5603)
                     /gene="fadR"
                     /locus_tag="PXB38_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL5354352.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
BASE COUNT         1732 a         1164 c         1082 g         1686 t
ORIGIN      
        1 tttttggtac aaaaaaagag aaaaaaacct tcaaatttag caaaatagaa tccgtattac
       61 tcaaacctat cggagatgct attggcgatg ctgttgtgca tatagctcat ttggagcaaa
      121 ttaaaaaagc tctcccaaat gtaaaaatag cggttttagt tacatctcgt aacaaattga
      181 ttttctctca agcaaacgtg gtagatatga tcttagaaga taaagtatcc acttatctct
      241 cgcagcgggg acattgggat ctttatttag atttcaaacc gacatttacc acaaaaagta
      301 ttattttaga tagtatttta aagcctaaat ttattattaa cttcggtaaa aaacaaaaaa
      361 gtatttacaa tttagataca gtaaaaaatt acgatttcac cactgtcttt ccaaagcagg
      421 ttcattttgc tgactatctc aactatgcta tttttgctga ttttttagaa aaaaatcagg
      481 tcaattataa tttaaacatt cctaatgaac taagcagttt tgcaaatacg ctatggcaag
      541 agaagaaaat tcgattacta ttgaatcctc aaggtagtat gcgtgaaatt tctactcaag
      601 aattatcaga gctattatct atgattgata aaagatatgt tcaacatatt agttgtttgc
      661 tgaccaatac aaccaatagt gccgaatatt tgtcgaaaat taaagcccca tttgaaataa
      721 gcctagcacc taatagtgat attttaggtt attgtgcatt agtaaactct gctgatattg
      781 taattgcagt tgatggaggt ggtgtccata tttcttgtgc attaggcaag aaattgctct
      841 cattttatgc caatcatcca gctaatattg cacgctggta tccaaaacct aagaaagatg
      901 ttgaaacttt tatggtgatc gcagataaat ggaccgagga taataatgat actcgaggtt
      961 tttctctggt agctcctgca aaatggttaa atcaccaatt tgcaaaattg atagaaaaat
     1021 acaccgcttg ttaattcgat atataagaaa aacaaaaccc cgcattagcg gggtttgcaa
     1081 taatcaaatt attttgagct tgggatgctg aaacgtttgt taaagcgttc aacacgacca
     1141 ccggtgtcaa caacacgttg tttaccagta tagaacgggt ggcagttgcc acatacgtct
     1201 aagtttaaat ctttacccac tgttgagcga gttttaacta cattaccgca agagcaagtt
     1261 gccgtaattt ctttatattc tgggtgaata ccttgtttca ttggggaacc tcataagaag
     1321 ccatatcgcc gcctatcttg ttagaatctc taccgctgat aggtaccata tgtaattaat
     1381 aaaaatgttg agcaaatgct caacgccaaa aagagtgcgt attttagata aatttgttgc
     1441 ctagatcaac tactaaacat tcgctttatc aagaaaatat tgtattagga aaaaaccgtc
     1501 tattaaaatc aaatccaatc aaaacaaatc acaatttaat cattttttgt gatacagatc
     1561 acatttctca tttccatttt tgagtttttc tagcaaaata gtgtagaatc caattcgata
     1621 tcctttccat tttatataac attctcgatt aggagtaaca caaatgacag aacgtaaagt
     1681 gctagcgaat gcaattcgtt ttttaagtat ggatgctgta caaaaagcta actcaggcca
     1741 cccaggcgca ccaatgggta tggctgatat tgcagaagtt ttatggcgtg attttttaaa
     1801 acacaatcca actaatccta aatgggcaga tcgtgaccgt tttgttctgt ctaacggaca
     1861 cggttcaatg ttaatctata gcttacttca tttaaccggc tatgatctct ctatcgaaga
     1921 tttaaaacag ttccgtcagt tacattctaa aacacctggt caccctgaat atggttatgc
     1981 accgggtgtt gaaaccacca caggcccgtt aggtcaaggt attaccaatg cggtcggtat
     2041 agcgattgcg gaaaaaaccc ttgcagcaca atttaaccgt gaaggtcata aaattgtcga
     2101 tcactacact tacgctttct taggcgatgg ctgtttaatg gaaggtatct cacacgaagc
     2161 ttgctctctc gccggtacat taggcttagg caaactgatt gctttctacg atgataacaa
     2221 tatctctatc gacggccacg ttgatggttg gttcactgat gataccgcac aacgctttga
     2281 gtcttatggc tggcaagtta tccgtaatgt cgatggccat aacccagaac aaatcaaatt
     2341 tgcgattgaa aatgcacaag ccgaaaccga gcgtccaact ttaattattt gtaaaaccat
     2401 tatcggctat ggttcaccaa ataaatcaaa ctctcacgat tgccacggtg cgccattggg
     2461 tgatgctgaa atccaagccg ctcgtgaatt tttaggttgg gaacatgccc catttgtgat
     2521 tccagctgaa atttatacag agtgggatgc aaaagcaaaa ggtacattag cagaaaaaga
     2581 ttggaacgct aaatttgctg cttatgaagc ggcataccct gaactagccg ctgaatttaa
     2641 acgccgttac gcaggcgaat taccggctaa ctgggaagct gaaagcaaag cttttattga
     2701 aaaattacaa gcaaatccgg caaccattgc aagccgtaaa gcatcacaaa atgcaatcga
     2761 agcttacgcg ccaatcttac ctgaattcct cggcggctca gctgacttag caagctctaa
     2821 cttaacctta tggtctggct caaaaccgat tcgtgcggaa cacaatgtag atggtaacta
     2881 catcaactac ggcgtgcgtg aattcggtat gtctgcgatt atgaacggga ttgccctaca
     2941 cggtggtttc attccttacg gtgcaacctt cttaatgttc tacgaatatg cacacaatgc
     3001 ggtgcgtatg gcagccttaa tgaagcaacg tgccttattt gtttatacac acgactccat
     3061 cggtttaggt gaagacggcc cgacccacca accggtagaa caaactgctt cattacgcca
     3121 aattccaaac ttagaaacct ggcgtccggc agaccaagta gaatctgctg ttgcttggaa
     3181 agcggcggta gaacgtaaag acggcccgac agcactaatc tttacccgcc aaaatctggc
     3241 tcaacaacaa cgtactgcgg agcaattagc gaacatctct cgtggtggct atatcttgcg
     3301 tgaatgttgc gaaaaaggca gttgcccgga tttaatctta attgcaaccg gttctgaagt
     3361 agatttagca atgaaagccg ctgatgtgtt agatgcagaa ggcgtgaaag tgcgtgtagt
     3421 ttcaatgcca agcaccaacg tgtttgacaa acaagatgaa gcctatcgtg aatcggtatt
     3481 accacgttca gtcactaaac gtgtggcgat tgaagctcaa ttagctgact tctggtataa
     3541 atatgtcggc tttgatggtc gaattgtagg tatgaatagc tttggtgaat ccgcaccagc
     3601 agatcaatta ttcaaactct tcggctttac cgttgaaaac gtggttgcta aagcaaaaga
     3661 aatcttataa tgaaacaata agataaagaa aagcgggaat taacttcccg cttttttgtt
     3721 gaacaactat gataagcggt gaaatttcag cgattttttg caaaaaatta gcgaaatatg
     3781 accgcttgta agctataaca tttcagcttg agcaagaatt ttttcttgct ctaaagctaa
     3841 tttttccagt tttcgctgtt ctttacgctc ttcatcaacc gcttcccacg catcataggc
     3901 ttgcacaatt ttggcaacca cagggtggcg gacaatatct ttgctgtcaa agaaattaaa
     3961 gctgagttcc ggcacttctt ttagcacttc cattgcgtgt tttaagcctg atttttggct
     4021 acggggcaaa tccacttggg taatatcgcc ggtaatcacc gctttggaat taaagccaat
     4081 acgggttaag aacattttca tttgctcggt agtcgtgttt tggctttcat ctaaaatgat
     4141 gaacgcatcg tttaaagtac gccctcgcat ataagcaagt ggggcaattt caatcacacc
     4201 acgttccatc aacttttgag ctttttcaaa gccaagcatt tcaaacaggg catcatataa
     4261 cgggcgtaag taaggctcaa ttttttgccc taaatcgccg ggtaaaaaac cgagcttttc
     4321 accggcttcc accgccggac gggtaagtaa aatacggcgg atttcttggc gttcaagcga
     4381 ttccaccgct gccgctaccg ctaaaaaggt tttgcctgtg ccagcaggcc cgataccaaa
     4441 actgatgtcg tggcttaata tattccgcag ataggcttgt tgatgttcgc cacgaggttt
     4501 aatcacccct cgcttggttt taatcgctat ttcgccttgc gagccggctt gccattggtt
     4561 ttgtagtagc attcggcttt cctgaatcgc caaatgtata tcttctaagt ccaattcctt
     4621 aattttgcct ttaatcgggg cagtttcatt atacagttgc ttaatcagct tcacactatt
     4681 ttgaaccaag gtagcagaat agtgattgtc atcttccgat tgaatcgtaa agttgaagcc
     4741 tgttcgagca ataatgagat taaaactttt ttcaattaag gctaaatgct catcaaatgc
     4801 accacaaagc gattgcagac gagcattatc ttgcggttct aagctaaaaa taatttcgtt
     4861 caaaattcta ccttctgtta aagctgacca aagctttcag gaatattagc ggataatttt
     4921 tgccaaattt caccactaga ttggcgattt ttagccatac aagcggctgc tttttcacta
     4981 tcttttgcaa gacaagtaca taataatgaa cggtaaaagc ttaacgttaa ttgacgatta
     5041 ttttcatcag caaagaaaat ttttgcgact tgatgataca ttgatttaaa gctatttagg
     5101 atcaacgcat acacaggctt attggctaaa aaagtaaatt gtctgaataa cttataatca
     5161 aattcagcat aagcagctgc tgtattttct aattcatcta gtccatcaaa gagtttagca
     5221 ctttcttcag gagcaaggta aatcgcttct ggaatataag cctccgccat acgagtacgt
     5281 aatgacacca cattggcaat caccactgga agatagcttt tatctagctt aataatagtg
     5341 ccaataatat taggccccga agtttcccaa atatcattca ctcttgttgg cttgccgtgc
     5401 tgaatactta accaaccttc tcgcgctaga cgttgtagta cttcacgtaa agttgttctt
     5461 gttaccccaa tgcgctctgc taactctcgc tcggcaggaa gatcagagcc ggcagggaaa
     5521 tgattattcc aaatactctt tacaatatat tcttccgcta acgctgccgg gctttgcgct
     5581 tttaaaatat cactgtgacc cattaatgcc ccccaagcaa aaaatatgct tatctaaaat
     5641 ctaactattc tttatttcta atca
//
LOCUS       DANLUT010000144         5652 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLUT010000144 DANLUT010000000
VERSION     DANLUT010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..2598
                     /gene="adhE"
                     /locus_tag="PXB38_002077"
                     /gene_synonym="adhC"
     CDS             <1..2598
                     /gene="adhE"
                     /locus_tag="PXB38_002077"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL5354353.1"
                     /translation="TQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKASVAAL
                     DKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGITEIA
                     DPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRDAAVA
                     AGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVGAGNV
                     PAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGVYLVN
                     KKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNILLAEC
                     AFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKALAKT
                     FGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLINIKR
                     VGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRITEQLR
                     QRRNQVMIQLFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMWLFYE
                     QPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDGDIKY
                     PLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGLALQA
                     IKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFHTIHG
                     RTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAVEAYA
                     QAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIEDMEAI
                     MTKAYYGKE"
     gene            2745..3641
                     /locus_tag="PXB38_002078"
     CDS             2745..3641
                     /locus_tag="PXB38_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL5354354.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSENFATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3651..5060
                     /locus_tag="PXB38_002079"
     CDS             3651..5060
                     /locus_tag="PXB38_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL5354355.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVGDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5167..5310
                     /locus_tag="PXB38_002080"
                     /pseudo
     CDS             5167..5310
                     /locus_tag="PXB38_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 domain-containing protein"
     gene            complement(5368..>5652)
                     /locus_tag="PXB38_002081"
     CDS             complement(5368..>5652)
                     /locus_tag="PXB38_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5354356.1"
                     /translation="AINDIGHTKTKVKHPQTNGICERFHKTILQEFYQVVFRKTIYMD
                     LATLQADLDEWLMYYNHHRTHQGKMCCGRTPMETLLDGKRIWAEKHLSSN"
BASE COUNT         1569 a         1277 c         1223 g         1583 t
ORIGIN      
        1 acgcaaccat ttgatgccca agcagaagtg aatgagcttg ttgaaaaagg cttaaaagcc
       61 cttgatgagt ttagaaaact caaccaagaa caagtggatt ttattgtcgc taaagcctct
      121 gttgctgccc ttgataaaca cggtatttta gcaatgcacg cttacgaaga aaccggacgg
      181 ggtgtgtttg aagacaaagc cactaaaaac ctgttcgcct gtgagtatgt tgtcaataat
      241 atgcgacatt tgaaaaccgc aggggtcatt agtgaagatg atgtcaccgg tattaccgaa
      301 attgccgacc ctgtcggtgt tgtctgcggt atcaccccaa ccaccaaccc aacctcaacc
      361 accattttca aagcgttaat cgcccttaaa acccgtaacc ctatcgtttt tgctttccac
      421 ccgtctgctc aacaatcttc tgcccacgct gctcaaattg tgcgtgatgc cgccgtggct
      481 gccggtgcac cggaaaactg tattcaatgg attacccagc cttcaatgga aggtacatct
      541 gctttaatga aacacccggg cattgcaact attttagcca ccggcggtaa tgcaatggtt
      601 gaagccgctt actcttgcgg caaaccggca ttaggagttg gtgcaggcaa cgtaccggct
      661 tatgtagaaa aaaccgctaa attaaaacaa gcggtgtatg acattgtaat gtcaaaatct
      721 ttcgacaacg gtatgatttg tgcctctgaa caagcggcga ttgtagataa agaaatttac
      781 gctgagttta ttaaagagat gcaatcttac ggcgtctatt tagtgaacaa aaaagagaaa
      841 gccttattgg aaaaatacat tttcggtatt gataaagcca aagatgaaaa ctgctcaggt
      901 gcaaaactca attcagcggt ggttggcaaa ccggctgcgt ggattgcaga acaagccggc
      961 tttaaagtac cggaaaaaac caatattctg ttagccgaat gtgcctttgt gggcgaagct
     1021 gagccactta cccgtgaaaa actttcgcct gtactggctc tgttaaaatc cgactccacc
     1081 gaacacggtt tggaattgtc tgaagcgatg gtgaatttcc acggtttagg gcatagtgcc
     1141 gccattcata ccgaaaacaa agccttagcc aaaacctttg gcgaacgggt aaaagccatt
     1201 cgggtgattt ggaactcacc atcaaccttt ggcggtatcg gtgatgtata taactccttc
     1261 ctgccatcgc ttacgctggg ctgtggttcc tacggtaaaa actctgtagg taacaacgtt
     1321 agtgcggtaa atttaatcaa tatcaaacgt gtgggcagac ggagaaataa tatgcaatgg
     1381 tttaaagtgc catcaaaaat ctactttgag cgtgactcaa ttcaatattt gaaatcaatg
     1441 cacgatgtgc ataaagtaat gatcgtaacc gaccgttcaa tggttgatct cggctttgtg
     1501 gatagaatta ccgaacaact tcgccaacgt cgcaaccaag tgatgattca gctctttacc
     1561 gatgttgaac caaacccaag cctgcaaacc gtacaacgtg gtacagaatt aatgcgtagc
     1621 ttccagcctg atactatcat cgcacttggt ggtggttcac caatggatgc agccaaaatt
     1681 atgtggttat tctacgaaca accggaagtc gatttccgtg atttagtgca aaaatttatg
     1741 gatatccgca aacgtgcatt caaattccca caattaggca gaaaagcgaa atttgtcggc
     1801 attccaacca cctccggaac aggctctgaa gtcacaccgt ttgcagtaat taccgatggc
     1861 gatattaaat atccgctcgc tgactactcg cttaccccaa ccattgcgat tgtcgatcct
     1921 gcgttagtaa tgtctgtgcc gtctcacgtt gctgccgaca ccggtttaga cgtattaact
     1981 cacgctaccg aggcttacac atcgatttta gccaacgact ataccgacgg cttagccttg
     2041 caagccatta agttagtgtt tgaaaacttg gaaaaatcgg tcaaagagtt tgatgaaacc
     2101 gcccgtgaaa aaatgcacaa tgcttccaca atggcaggga tggcatttgc caatgccttc
     2161 ttaggtattt gccactcaat ggcacacaaa atcgggggta aattccacac catccacggt
     2221 cgaaccaatg cgattttact gccacacgtt attcgctata acggcacacg cccaaccaaa
     2281 gtggcaactt ggccaaaata caccaattat gtcgcagatg tgcgtttcca agatattgcc
     2341 agaatgcttg gcttaccggc agaaaccccg gaacaagcgg tggaagctta cgcccaagcg
     2401 gtacacgatt tagccgttcg ttgcggcgtg aaaatgtcgc ttcgtgagca aggcgttgat
     2461 gagcaagcct tcttgaatgc ccgccgtgaa cttgccctac acgcatttga agaccaatgc
     2521 acaccagcaa acccacgttt ggcaatgatt gaagatatgg aagcgattat gactaaagcc
     2581 tactatggca aggaataaag cacaatttaa tcgttaaact tactaaatgg ccgcttgcaa
     2641 gcggtcattt ttcttgaaat ttttactttt cccttcacaa aatactttcg ctcttttaca
     2701 aagcatagta tttttatcgc tccttttatc ttacaggaaa tactatgcaa attacgattt
     2761 tagacggcgg aattagccgt gaattaatgc gtcgcaatgc tccatttcat cagcctgaat
     2821 ggtctgctgc cgctttgtat gaaggcccac attttgtgca agcggtacac gaagatttta
     2881 tcgctcacgg ggcagaagtg attactaccg acagctatgc ggttgtgccg tttcacattg
     2941 gcgaaaaacg ctttgcggca gacggcaaaa tgcttgccga tttagccggt cgccttgcca
     3001 aacaagcggt caaaaattcg gaaaatttcg caactcaaat tgcaggctca cttccaccaa
     3061 tgtttggctc ttaccgtgcc gatttaattc aaatggaacg ctttgctgaa gtcgctcagc
     3121 ctttaattga cgggctttcg ccttatgtgg atatttggct ttgcgaaacc caaagtgcga
     3181 ttattgagcc gatttccatc aaagcattat tgccgaaaga caaccgcccg ctttgggtct
     3241 cttttaccct caccgatgat gaaccaacca ccgagccaca acttcgctcg ggcgaaagcg
     3301 ttaaacaagc agtcgaagaa atggtgaagt taggcgtgca agcgatttta tttaactgct
     3361 gtcagcctga agtgatcggc gaggcattaa gtgtaaccca aaaaacttta gccgaattaa
     3421 aagctaccca tattcgcaca ggagcttatg ccaacgcctt tgctccacaa ccaaaagatg
     3481 ccaccgccaa tgacggttta gatgaagttc gccaagattt aaccctggag gcttatttag
     3541 gctgggcaaa aaaatggacg gaacaagggg caactattat cggtggctgc tgcggcattg
     3601 gggttgagta tattgaaacg ctggcaaaaa atttaaaata aggaaatcga atgtcaaata
     3661 aaaaaatagg attaatttca ctcaccgcct tagtgctaag ctcaatgatt ggctcgggga
     3721 ttttcagctt accgcaaaat atggcagccg ttgccggagc agaagccatt accattggct
     3781 ggctgattac cggtgtcggc attatctttt taggtttatc gtttttcttt atttcccgct
     3841 tgcgtccgga tttagacggt ggcatttaca cctacgcacg ggagggtttt ggcgagctga
     3901 tgggctttat gtcagcgtgg ggctattggc tctgtgccac cattgggatt gtaggatacc
     3961 tcaccgttgc ttttgaaggt ttgggtgtat ttaccgacaa cccgaacacc gtgattttcg
     4021 ggcaaggtaa caccctcgcc tcttttattg gatcttcaat cattgtgtgg ctggttcacg
     4081 ccctcatcgc aggcggtatc aaagaagctg cctttgtaaa cttaattgcc acttttgtga
     4141 aagtcgctcc gctcattctg tttatcgggt taggcatttg gtatttcgat gtggatctgt
     4201 ttaatagcga tgttaaagcc accgcactta ataatagtgt aggcgaccaa gtgaaaagca
     4261 caatgttaat caccttatgg gtatttaccg gtgtggaagg ggcttctgtg ctttcggctc
     4321 acgcgaaaaa gcgttctgac gtgggcctgg caaccgtatt aggtattatt attgcacttg
     4381 ctctttatgt ggcaattacc attctttcac tcggaattct gccacgggaa actattgcca
     4441 atatggcaaa tccgtcaatg gggccgttgc tcgatgcaat gatgggccca accggcaaag
     4501 tgattattac tgcttgttta attgtatcgg tgcttgcctc ttacattagc tggacgatgt
     4561 attcggcaga agtgccttat cgtggctcaa aaaacggggc tttcccgaaa attttagaca
     4621 aagtgaataa aaacggcacg ccgattaact cactctggtt taccggcttt atcgtgcaat
     4681 tttgcttggt gttggtgttt gtttttgagc aaagctataa caccttattg ctgatttcca
     4741 cctcgatgat tttaattccc tatttcttaa tcggggctta tttattcaaa ttagcgattc
     4801 aaaccaacgc cacttggtac attaaactca ccggctttat ggcagccctt tacggattat
     4861 ggattgtcta tgccgcagga ctagaatatt tgctgctttc ggtggtgctt tatgtacccg
     4921 gaattttact cttcctctac tccaactata aattcaacgg cagattaacc ctttcaaccg
     4981 ctgaaaaggt catcttaatc gtgctactgg taatttttgg ctatgccgtg attgagctgc
     5041 cagcactatt agcagcataa ttcccatcaa aaatgaccgc ttgcaagcgg ttatttttct
     5101 aggatctttt gcaaagattc attagaatag aaaaaacgtc aataataaat aaaaagagga
     5161 gaaacaatgc aaacttatca acataaagcc ctttgtcggg taagaaccat tacccttttt
     5221 ctgagtttaa ccaaagataa attgcagtgg gaaacggcat taaatgtggc aaaagcagaa
     5281 tttgatctat tagttcccgc tattcaaaca tgtagaagat caaacctaat ctgacagttc
     5341 ccgtttaaaa ttatagtgcc tgtcagatta atttgagctt aaatgctttt ccgcccaaat
     5401 ccgttttcca tcaagtaatg tttccatcgg tgttctgccg cagcacattt ttccttgatg
     5461 agttcgatga tgattataat acattaacca ttcatctaaa tccgcttgta atgtcgctaa
     5521 atccatataa attgtcttcc taaatacgac ttggtaaaac tcttgtaaaa tcgtcttatg
     5581 gaagcgttcg cagataccat tcgtctgggg atgcttcact ttcgttttcg tatgccctat
     5641 gtcatttatc gc
//
LOCUS       DANLUT010000145         5646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLUT010000145 DANLUT010000000
VERSION     DANLUT010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(24..560)
                     /gene="hpt"
                     /locus_tag="PXB38_002082"
     CDS             complement(24..560)
                     /gene="hpt"
                     /locus_tag="PXB38_002082"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL5354357.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(599..1948)
                     /gene="pmbA"
                     /locus_tag="PXB38_002083"
     CDS             complement(599..1948)
                     /gene="pmbA"
                     /locus_tag="PXB38_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL5354358.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLVKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTISREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMPVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPSWFAISERPHLLRQLASSAFDSEGVITQDREIITDGILQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRTGGLNSLLKEMGTGLLVTEMLGSTINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            2047..2577
                     /locus_tag="PXB38_002084"
     CDS             2047..2577
                     /locus_tag="PXB38_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL5354359.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKNEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            2583..2954
                     /locus_tag="PXB38_002085"
     CDS             2583..2954
                     /locus_tag="PXB38_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL5354360.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            2967..3680
                     /locus_tag="PXB38_002086"
     CDS             2967..3680
                     /locus_tag="PXB38_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL5354361.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLSLVFGLCCFCL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVADLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLILVQGILILLATEIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            3683..4246
                     /locus_tag="PXB38_002087"
     CDS             3683..4246
                     /locus_tag="PXB38_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL5354362.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVMTKGAELT
                     RTLETDYTREALHELADEIHSLNNVGASIASGSFKTAGMIVAPCSMRTLAAIANGFSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQQPKNL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            4309..4749
                     /locus_tag="PXB38_002088"
     CDS             4309..4749
                     /locus_tag="PXB38_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL5354363.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENAR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(4753..5628)
                     /locus_tag="PXB38_002089"
     CDS             complement(4753..5628)
                     /locus_tag="PXB38_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354364.1"
                     /translation="MMKTILIDEANQMKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
BASE COUNT         1617 a         1189 c         1085 g         1755 t
ORIGIN      
        1 atctaagtag tgattgagtt tttttattca atcactactt tagcaatata atctaaatga
       61 cgatattttt gggcataatc aatcccataa cccaccacaa attcatcggg gatctcaaat
      121 cccacccatt ttacgggcac atcaacttcg cggcggcaag gtttatctaa taaagtacaa
      181 atagcaagtg aatttggctc acgtaacttg agaatctccc ctaccttgct taaggtgaag
      241 ccagtatcaa taatatcttc tacaatcaat acatctttac cttgaatttc gccatctaaa
      301 tcttttagaa ttttgacatc acggctggat tccgtgctgc tgccatagct tgatgcggtt
      361 agaaaatcca cttctacagg taactctagc tttcttacta aatctgccat aaacataaac
      421 gagcctcgca ataaaccaac cactacaagg ttttggcact gtttttggtg atagtgttga
      481 ttgatttctt ttgctaattc attgattcgg tttaatactt cttcttttga atgtagcgtt
      541 tcgatatgat gtttttccat tgatttctcc aaataaaatt gattacaagc ggccgttttt
      601 actcgcctga aaccatcatt ttttctaata agattgaacc tgtttggata tttgagcggt
      661 gttcaatatc atcgcctacc gccactaaat ttttatacat atcttgcagt tgtcctgcaa
      721 tggtaatttc tgcaaccggg tattgaattt cgccattttc aacccagaaa cctgccgctc
      781 cacgagaata ttcgccagtc acgctattaa ttgtcgaacc taacatttcg gtcactaaca
      841 agcccgttcc catttccttg agtaagctgt ttaacccacc ggtgcggttt ggctttacca
      901 gccagttatg gataccgccg gcgtgtcctg tgcttttcag tcccattttt ctacctgaat
      961 agctggtcat taggtaagtt tgtaagatgc catcggtaat aatttctcgg tcttgggtaa
     1021 ttaccccctc gctatcaaag gctgatgaag caagttggcg taataaatgt gggcgttctg
     1081 aaatcgcaaa ccagcttggc aaaatttgct cgccaagttt atctaacaaa aagctggatt
     1141 tacggtataa cgctccacca ctaatagctc cggccaaatg ccccactaaa ccggttgcca
     1201 catcgttata gaaaatcaca ggcatttcgc cggtcttaat tcgttgcgga ttcaatctat
     1261 ctaccgcttt aattgcagct tgctccccta cccatttcgg tgcttgtaat ttatcaaact
     1321 cacgggaaat ggtgtattca taatcacgct caagctgatc ttcataagct gaaatcacgc
     1381 tacaagagag tgaatatcgg ctcgacaggt aactctgcaa cattccgtgc gtattgccat
     1441 aaacacgcac gccactgtga gaattgaaag ttgccccgtc actattcaca attttttcgt
     1501 ctgcatttaa ggcataatgc tccgcttcaa tcgccaattc gactgcttga tcaactgaaa
     1561 tatccgcttg gtggtacagt tccaaatctt ctgcctcaaa ggcaagcaat tctttatcag
     1621 caagcccggt acaagcatct tctgaggtat attttgcaat cgcaagggct gcttcaaccg
     1681 ttttttgaat cgactctggc tgaagatcgg aggtggaagc attacctttg cgtttgacta
     1741 aataaaccga aataccgaga gaaccatcgt tattgaactc gatgttttca acttgctcta
     1801 aacggcttga aaccgaaagc ccggcaactt tagtcacgcc tacttccgcc tctgccccag
     1861 cctgttttgc aaaatttaag gcaaattcga ccgcttgtcg tagctcctgt tcttgttgta
     1921 acaaggtttg tttatctgta attgacattt tgttccattg attgattgca ttgatgaata
     1981 tattctaact caaatttctg ttagaatacg gcatttttta gagtttatgt aatgaaagga
     2041 taaagaatgg ctaaaaaacg gagcaaaaac gaaattgact ggacagatga ggaagaagaa
     2101 atcatctggg tcagcaaaaa tgagataaaa cgagattctg aacacttaaa aaaaattggg
     2161 gctgaattga tcgaattgac cccacaaaat ttggaaaaaa ttccactaga cgatgattta
     2221 aaagaggcaa ttcgccaagc tcaaggcttt aaaatggagg ctcgccgccg tcaaattcaa
     2281 tttatcggca aattattacg caaccgtgac caggagccga tccaagaagc cttagataaa
     2341 gtgaaaaatc gccataatca gcaacaagcc ctattacata aattggaatt agtgcgtaat
     2401 caactgattg caatgggcga tgcatcatta gataatttat tgacggaata tcctcaatta
     2461 gaccgccaac atttgcgtaa tttaattcgt ggggcaatta aagagcgtga agccaataaa
     2521 ccggcaaaaa attaccgtga aatttatcaa tatttaaaaa ctgaaatcgt ggagtgatta
     2581 ttatggagta cctatcaacc attcttaaag ctcatatcgg cttagcttat attagtttaa
     2641 ttttattatt aacccgtgga tttttatcgt caaagatggt ggattggcga caatataaaa
     2701 ttttgcgcat tgccccacac gcagttgata ccttcttact tatcaccggt attgctgctg
     2761 tcgctatttt cttagcttat gattttttca ccttagcaca attcagttgg ttgctaccaa
     2821 agttactctt cttagtactt tatattgtat ttgcgacaaa agcgttcaaa aaaggacaac
     2881 cgttttcgct caaattttat ctgttagccg tagtctcatt cttattaatg atgctaactg
     2941 ccacttttca ctaaataagg gaaactatga tcgggccttt tgtgaatgcc ggtgcaatta
     3001 ttttaggggg cgtgctgggt gcttgtttag ggagtcacct gcctgaacgt attcgcacta
     3061 cgttgtcgct ggtattcggc ttatgctgtt tctgcttagg tatgatgctg actgcctcag
     3121 taaaatatat gtctgcggtt gccttagcat tgattttagg cacgatcatc ggtgaactga
     3181 tttatttaga aaacagaatc ggtaaagttg ccgatttagc tcgtggctta attgaccgcc
     3241 tattcccacc ggtgcatagt ctttcccaag aagagttttt agagaaattt attgctctgc
     3301 ttgtgctgtt ttgtgtgagc ggtaccggca tttttggtgc aataaaagag ggaatgacgg
     3361 gtgatccgag cattctttac attaaatcga ttttagactt cttcactgca atgattttcg
     3421 ccgcttcatt aggttatgcc attgcagcga tcgcagtgcc gttaattctt gtgcaaggta
     3481 tcttaattct actagcaacg gaaataatgc ctttaaccac tgccaatatg atggcagatt
     3541 tctctgcaac gggcggctta ttgttatttg caaccggttt tcgcatttgt gggattaaaa
     3601 acttcccagt ggcgaatatg ctaccggcac tgctccttgc gatgccaatg tcttatttct
     3661 gggaatggtt ggtacattaa tgatgaaaaa acggattatt gtcggcatta gtggggcaag
     3721 cggttttcaa tatggctata aagtgttgga actgctgaaa ccgttttcag aaattgaaac
     3781 ccaccttgta atgaccaaag gggcggaact gactcgcacg cttgaaacag attatacccg
     3841 agaagctcta cacgagttag ctgatgaaat acattcgctg aacaatgttg gtgcaagcat
     3901 tgccagcggt tcatttaaaa ccgcaggaat gattgttgcc ccttgctcta tgcgaacgct
     3961 tgccgctatt gctaatggat ttagcgacaa tttactaacc cgtgcggcag acgtggtgtt
     4021 gaaagaacgg cgtaaactgg tattaatggt gagagaagct ccgctcaacc ttgctcacat
     4081 tgacaatatg cgaaaagtga ccgaaatggg cggaattatt tttccaccga ttccggcatt
     4141 ttatcaacaa cctaagaacc ttgatgaaat ggtcacccac agcgtgagcc acgccctttc
     4201 cctgttggat attgacattc caaatacccc acattgggga gaataattcg gcttatcttt
     4261 tgctttttga aatgctagaa tacctgataa aaactatcag gtatttttat gcacaatcca
     4321 atcccgaccc atattttaga tttcattcaa actaaccacg ttgtcaatat tgcagctcat
     4381 accgaacagg atttttgggc agcaaattgc ttttatgcct ttgaccaaga aaatgctcgc
     4441 ttgattatct taaccgccaa gaaaaccaga cacgctggct tgatgcttga aaacccacat
     4501 attgtcggca caatttgtgg gcaaattgag aagatcaacg aaattgaagg tgtccaattc
     4561 tccgctaccg ccgaatgttt agaagataaa caagccgaaa aagccgcttt gcaaatttat
     4621 taccaaaaac acccgcttgc acggcttaag cctagcgatg tttgggtatt atcattcaat
     4681 accatcaagc acaccggtaa taaacttatg tttgcgaaaa agacgatttg ggagagaaat
     4741 ataatttgaa gctcaaataa tgcctttagc cttatcccgt ttgatttggc ttggtgttat
     4801 cccaaaagtt cgcttaaatg ccgttgaaaa attctccgaa ttggcatatc cggcaaattc
     4861 agctgcttgt gtaatactct gcccttgtaa tagtaattta taggcttgtt ctaatttaga
     4921 acgccttaaa tacgcaaaaa tagaggtttt gtggtaatgc tgaaattcat tttgtaatgt
     4981 ggtcacattg gtatggaaat atattgcaat ctgcttcaaa ctccagccgt caaatttacc
     5041 gctctcaagc aattctgtta actgttgcac ccgatctttt tttaaccggg gagcctgtgt
     5101 cagctgagaa aaagcacttg ctaataaagc taatagatta ccttctttct caagtaaccc
     5161 aaatggttgc atttcctgct ctgacacaat atcgtgaata agttttaaca tactctgagt
     5221 caaaataatt tggtgggctt ttaaatgctg tttaaagtga tgatagcttg ccaaattcaa
     5281 ctggctttct attagccatt tagggtagag aaagataaca agctcttttt gaagttgccc
     5341 tttcctaaaa attttacgcc ccatttcagc tctatttagc ggtaaaaatg cggcttgagg
     5401 ttttaaactt gcatctaatt caaatacttc cgaattaaaa tcaatttccg atcgaccact
     5461 caacaatata accaatctta gtccggcttc aaattccgca ggttcttgct ctacggtttc
     5521 agtaactgaa atctctgtat atttcagcat aagatctgaa cgtagtcggt ataaatgtga
     5581 aaaacctttc atttggttag cttcatcaat caagattgtt ttcatcatta aaaacttttt
     5641 ttcgca
//
LOCUS       DANLUT010000146         5619 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLUT010000146 DANLUT010000000
VERSION     DANLUT010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5619
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            269..1402
                     /gene="carA"
                     /locus_tag="PXB38_002090"
     CDS             269..1402
                     /gene="carA"
                     /locus_tag="PXB38_002090"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL5354365.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSPKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1505..4711
                     /gene="carB"
                     /locus_tag="PXB38_002091"
     CDS             1505..4711
                     /gene="carB"
                     /locus_tag="PXB38_002091"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL5354366.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPQSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4786..>5619)
                     /locus_tag="PXB38_002092"
     CDS             complement(4786..>5619)
                     /locus_tag="PXB38_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HDL5354367.1"
                     /translation="MATSGHFFAKSDRLYNVEDSLQENGSARESLAYSARIEIGLKTF
                     LDNGGFKAFTDNFQNLNGIKQLPGLAVQRLMEQGYGFGGEGGWKTAALVREVKVMGYG
                     LPNGSSFMEDYTYDLDEQNQVVLGAHMLEVCSSIAKEKSTLAIRPLGIGGKADPVRLI
                     FSSKAGKAVNATVVDMGDRFRMVVADLDAIASPNPMPNLPVGHAFWKLQPNFDVGTQA
                     WILAGGAHHSVFSLDIDADMLRMFAEYFGIEFIHINQNTELPQLKNELRWNDLAYKFT
                     K"
BASE COUNT         1631 a         1272 c         1240 g         1476 t
ORIGIN      
        1 agttaacaaa aaaacaacaa atagaggtgt gtgtattttt ctctgtcaca ttatttcaat
       61 atttgataaa ttccccttgc ttaaaaatga ataaaaattc ataataattg catatatttt
      121 cacttccgag tagaaaatga aataaaaaaa gaagaaagaa ataggcaaaa taactaattt
      181 ttacttgaat gcaaacgttt gcttgattaa acttagtcgc ctacttctaa ggctacacag
      241 ataaaatttg atgattagga gtaaaacaat gttcaaacca gcaattctgg ttctcactga
      301 cggttctgtc ttttccggca aatccattgg tgctgacggt cacactatcg gtgaagtggt
      361 atttaacact gcgatgaccg gttatcaaga aatccttacc gatccttctt atactaaaca
      421 aatagtcacc ctgacttacc cccacattgg caataccggc attaatttag aagataaaga
      481 atcccccaat gtttgtgcct ccggcttaat tattcgtgat cttcctcttc tccatagcaa
      541 cttccgtgcg tcctcctcac tttcagatta tctcattcaa caaaacattg tcgctattgc
      601 cgatattgat acccgccgtt taacccgaat tttacgcgaa aaaggggcac aagccggttg
      661 tattttagta ggcgatgcca cagaagagaa tattgctaac gctttggcat ttgccaacag
      721 tttcggttct atggctggga aagatttggc tcaaagtgtc acctgcaatg aattatataa
      781 atggacagat ggtgaatggc aattaggtaa aggttatgta ccgcaacaac aaaccgagtt
      841 ccacgtagtt gcctatgatt acggtgtaaa acacaacatt ttgcgaatgc ttgccgaacg
      901 aggctgtcgc ttaaccgttg tgccggcaaa aacctctgct gaagctgtgc ttgcgttaaa
      961 tccggacggt attttccttt ctaacggccc gggagacccg gagccgtgcg attatgccat
     1021 taccgcaatc cgaaaattat tggaaacgca aaaacccatt ttcggcattt gcttagggca
     1081 tcaactttta ggtttagcgg caggcggtaa aaccaaaaaa atggtgtttg gtcatcacgg
     1141 agctaatcac ccggtacaag atttagacag cccaaaagtg ctcatcacca gccaaaacca
     1201 cggttttgaa gtagatgaat ccagcttacc atctaatgtg cgagtgactc accgctcact
     1261 gtttgacggc acggtgcagg ggattgaact cactgataga ccggcgtttt cgttccaagg
     1321 tcacccggaa gccagcccgg ggccgaatga tgttgcctat ttatttgacc gatttgtcag
     1381 tgagatgaaa aaagtgaagt aaggacgtac ctatgtgtgt ccatcaagcg gtcgaaattt
     1441 gcaaaaaact taccaaaaat aaccgcttgt agcctgaaat aaacgagata aaagagagcc
     1501 caaaatgcca aaaagaacag acataaacac tatcctaatt atcggtgccg gtccgattgt
     1561 gatcggtcaa gcgtgtgaat ttgactactc cggagcccaa gcgtgcaaag cgttgcgtga
     1621 agaagggtat aaagtggtgt tggtgaactc caaccctgca accattatga ccgacccgaa
     1681 tatggcagat gtgacttaca ttgagccgat tgaatggaaa acggttgaaa aaatcattga
     1741 aaaagaacgc cctgatgcca ttttaccgac tatgggcggg cagacagcgt tgaactgtgc
     1801 cttagatctt tcgaaaaacg gtgtgctgaa aaaatataat gtagagctga tcggagctac
     1861 cgaagacgcg attgataaag ccgaagatcg tggtcgtttt aaagaagcaa tgactaaaat
     1921 cggcttgaat acgccacaat cattcgtttg ccacagtttt gaagaggcct tagcagcaca
     1981 agagcaggtt ggctttccaa ccctgattcg cccctctttc acgatgggag gctccggcgg
     2041 tggtattgct tataatcgag atgaatttat cgccatctgc gaacgtggtt ttgaagcctc
     2101 gcctactcac gaattactga ttgaacaatc cgtactaggc tggaaagagt atgaaatgga
     2161 agttgtgcgt gaccgtgccg ataactgcat tatcgtctgc tcgattgaaa acttcgaccc
     2221 gatgggtgta cacaccggcg actccattac cgttgctccg gcacaaacgc taaccgataa
     2281 agagtatcaa attatgcgta acgcttcgct ggcggtattg cgtgagatcg gcgtggacac
     2341 cggcggttca aatgtgcaat ttgcgattaa ccctgcaaac ggcgagatga tcgtcattga
     2401 aatgaaccct cgtgtgagcc gttcttctgc actcgcatct aaagccaccg gcttcccgat
     2461 tgccaaagtt gcggcgaaat tggctgtagg ctacacactc aacgaattgc gtaacgacat
     2521 caccggaggg ctgattccgg cttcattcga gccgacttta gattatgttg tgaccaaaat
     2581 tccacgcttc gcctttgaaa aatttgccaa tgcagacgac cgattaacca ctcaaatgaa
     2641 atcggtaggc gaagtaatgg caatgggaag aaccttccaa gagagtttac aaaaagcctt
     2701 gcgaggcttg gaaaccggca tttgcggctt taacttgctt tccgaagagc ctgaaaaaat
     2761 ccgccgtgaa cttgccaacc ccggaccaaa ccgtattttg tatgttgccg atgcctttgg
     2821 agcaggcttt tcattggaag aagttcacca ctattctaaa atcgacccgt ggttcttggt
     2881 gcaaattcaa gacttagtac ttgaagaatt agctttagag aaaaaacagt ttagcgatct
     2941 agatgctaac gaaatccgcc gcttaaaacg caaaggcttc tcagacaaac gtatcgcaca
     3001 gcttaccaaa gtcagcgaaa aaatggtgcg ggattaccgc catacttacg ctattctacc
     3061 ggtgtataaa cgggtagata cctgtgcagc cgagtttgcc tcagatacgg cttacctcta
     3121 ttctacttac gaggaagagt gtgaagccaa accgtctgat cgcaaaaaag tgatgatttt
     3181 aggcggcgga ccaaaccgta tcgggcaggg gattgaattt gactactgct gcgttcacgc
     3241 ctcgcttgct ctgcgtgagg caggttatga aaccattatg gtgaactgca accctgaaac
     3301 cgtttccacc gatttcgaca cctccgaccg cctctatttc gagccgctaa cattagaaga
     3361 tgtactggaa attgtgcgtg tagaaaaccc gtggggcgtg attgtgcatt acggcggtca
     3421 aacaccactg aaattagcga atgccttatc tgatgccggt gtaaacatta tcgggacttc
     3481 cgccgacagc attgatgccg ccgaagaccg tgaacgtttc caacaaattc taaacactct
     3541 cggtttaaaa cagccggcaa atcgcaccgc ccgtaatgcg ttggaagcgg tggcattggc
     3601 aaatgaagta ggctatccgc tggtggttcg cccatcttat gtgctaggtg gtcgggcaat
     3661 gcaaattgtg tataacgatg aagagctaaa ccgctatatg cgtgaagcgg tatcggtttc
     3721 caacgacagc ccgattttac tcgaccactt cctcaataat gcgattgaag ttgatgtgga
     3781 ttgcatttgt gacggcgaaa atgtactcat tggcggcatt atgcaacacg ttgagcaagc
     3841 cggtattcac agtggcgata gtgcctgctc actacctgcc tattcgttaa gcggtcatgt
     3901 tttggacgaa attcgcaaac aaaccaacgc aatggcgttt gctctcggtg tgaaaggctt
     3961 gatgaacgta caatttgcag tacaaaatga ggtcgtttat gtgttggaag ttaaccctcg
     4021 agccagccgt actgtaccgt ttgtcagcaa agctaccggt cgcccactgg caaaaatcgc
     4081 tgctcgcgtg atggctggtg aaacccttgc cgacttaaat gcattagagg aaattatccc
     4141 aagcaaattc ttcgttaaag aagcggtatt cccattcatc aaattcccgg gtgtggatac
     4201 cattctcggg cctgaaatgc gttctaccgg cgaagtgatg ggcataggta atacctttgc
     4261 tgaagcgttc ttcaaagcac aactgggtgc cggtgaacga attccaaaag tcggcaaagt
     4321 gtttatgtcg gttattgaag agcataaacc tgctttaatt tacattgcca aacgtttcca
     4381 agaacaaggc tacggtttat gtgctacctt cggcactgca aacttcctac ggcaacacgg
     4441 aattgcagtc caaacggtaa acaaagttcg tgaagggcga ccgcatattg tcgatgcgat
     4501 caaaaacggc gaaattgcgt tggtaatcaa caccgtcagc ggagagcctg aagtgattgc
     4561 cgacagccac tctatccgcc gtaccgcctt gcaacaacgt gtgcctattt acaccaccct
     4621 tgcaggtgct gatgctatct cctacggcgt aaaacatatc aatgagtttg atgtgtattc
     4681 agtgcaggaa ttagaacaaa aggctaacta aaataaagct aaaatgacaa gcggtcagat
     4741 tttgcaaatt ttttacaaat tctgaccgct tgtgtttgta gaggattatt tagtaaattt
     4801 atatgctaaa tcattccagc gtaattcatt tttgagttgt ggtagctcgg tattttggtt
     4861 gatatggata aactcaatac caaaatattc agcgaacatt cgtagcatat cggcatcaat
     4921 atctaaacta aatacactat gatgagcacc gccggctaga atccatgctt gagtacctac
     4981 atcaaaattt ggttgaagct tccaaaaagc atgcccaact ggtaaatttg gcattggatt
     5041 tggtgaggcg atagcgtcta aatccgcaac aaccattcta aaacggtctc ccatatctac
     5101 aacggttgca ttcactgctt ttcccgcctt actactgaaa attaagcgaa caggatctgc
     5161 cttaccgcca atacctagcg gtcgaatggc taatgttgat ttctctttgg caatagacga
     5221 acaaacttca agcatatgag cccccaatac cacttggttt tgttcatcta aatcataggt
     5281 gtagtcttcc ataaaggaag aaccgtttgg taagccataa cccatcactt tcacttcacg
     5341 cacaagagct gcggttttcc aacctccttc accaccaaat ccgtagcctt gttccattaa
     5401 acgctgaaca gccaagcccg gtaattgttt aatcccattt agattttgga aattatcagt
     5461 aaaagcttta aatccaccat tatctaagaa tgtttttaag ccgatttcaa tacgagcaga
     5521 atatgcgaga gattctcttg ctgaaccatt ttcttgcaag ctatcctcaa cattatacaa
     5581 gcggtcagat tttgcaaaaa aatgaccgct tgttgccat
//
LOCUS       DANLUT010000147         5593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLUT010000147 DANLUT010000000
VERSION     DANLUT010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..2474
                     /gene="hrpA"
                     /locus_tag="PXB38_002093"
     CDS             <1..2474
                     /gene="hrpA"
                     /locus_tag="PXB38_002093"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5354368.1"
                     /translation="PRKRGEGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMM
                     IVSALSIQDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFR
                     NLCRKDYLNYNRVREWQDIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGL
                     KDNEKMHYLGARNAHFFIFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEP
                     LAVHLTKSSYSEPHWAKSKGAVMASEKVSLYGIPIVASRPVNYGSIDPAVSREVFIRS
                     ALVEGEWHNNYKFFKENHRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSS
                     KHFDTWWKQASKKDPELLNFEKSFLINDNANLASELDFPNFWHQGDLKFKLSYQFEVG
                     KDHDGVTVHIPLSLLNQVEPEGFDWQISGLRHELIVSLIKSLPKSLRRNFVPAPNYAD
                     AFLGRAEPFKKSLLDSLSHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQ
                     ESENLDELKFALKDEVQNTLSNIADDGIEQNGVHIWNFAELPQFYEQKKAHFSVKAYP
                     AIVDEQTAVGVKLFETEFEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFA
                     PFGKVLELIDDCIACAVDKLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEK
                     CLTLAYELNKRLKGKLDFTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAI
                     ERRLDKLLVDSNTDRAKMLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVS
                     LFAQQLGTKYPISDKRILNVINEIK"
     gene            2724..5534
                     /locus_tag="PXB38_002094"
     CDS             2724..5534
                     /locus_tag="PXB38_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5354369.1"
                     /translation="MYKIKHSFNKTLIAISISSFLSIAYATESIENPQPIIQLSESIS
                     TKYSGKGVKLGILDEGFMLKHPRHSQNIHPITHQLTTPDGEVRTYDPSYIQFEVKPFE
                     QNGETAFATLFETHGAGVAGIISAKADKTIGNGYSGGVAKGVELYVTSKSYRRTLEEV
                     LRDVQKELENKDNEEEEEEKKPNLAELGKADLFVSKEKEVVFERSEWATGLNKLLDKK
                     VFAINNSWNSDPISDDIHEIDKFYQSITQNKQNPLLQAIMRAKDNDTLLVFANGNESK
                     KQPGIMTLLPRYFSELEKHLIAVAAVDNKQQITEYSNHCGASKNWCVSAPGNLHLLNA
                     DPDAKKNPQYGLSKDEGTSFATPVVTGSLAVLKERFDYLTATQIRDTLLTTSTDLGEK
                     GVDSVYGWGLINLKKAINGPTQFLNDETVTVTRDDHWKNPLSSKFKVTKKGSKSLNLD
                     GENYLAEVAVEQGRLALNGKTKVKTISNNATLAVNETEVEQNYYASEQSQLEVLGKSG
                     LIANAQANIHLAGSLKIDDKLTEKTKSGDVSTTVVQLKDKATYQGGFTQLVENENLAK
                     RGLIQDLYFKDSEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRGWYNDWLQ
                     SALEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQTQQHLFTAYHTPQQTAVWAEH
                     LNQKQSASSKHTDVKHYQSLLGVSHKLADKTGLSATLSQQKNRLAKPFSQATLKQTAL
                     NIGLRYHLDDAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFIP
                     NQWIIEPSLGVQWIQTQMKGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSI
                     SPYIGLNYLHRLSGKTTKITSDIAGKTLHSEATVKRNRQLNGEIGVKLHYKNWFTTMN
                     LDYSRVKSANLFGWKASIGLTF"
BASE COUNT         1828 a         1127 c         1223 g         1415 t
ORIGIN      
        1 ccccccgtaa acggggggag gggtttagat taacccctat cggtcgccag ctcgcccaac
       61 tgccggtcga tcctcgctta ggcagaatgg tcattgaggc agcaaaaaac ggctcgctgc
      121 acgaagtgat gatgattgtg tcagctctct caatccaaga ccctcgtgag cgtccgcagg
      181 aaaaacagca gtcggcagac gacaaacacc gccgttttgc tgataaagaa agcgatttct
      241 tggcctttgt gaatttgtgg cactttatcc aagcccaaca aaaagaactg tcgaaaaacc
      301 agttccgtaa cctctgccgt aaggattatt tgaactacaa ccgtgtgcgg gaatggcagg
      361 atatttatca ccagctccgc cttgcagtta gagaaatggg cttaaaaatt aacagtgaac
      421 cggcaagtta tcagccaatt cataccgctt tactcgccgg cttgttgtcg catatcggct
      481 tgaaagataa tgaaaaaatg cactatttag gagcaagaaa tgcccacttt ttcattttcc
      541 cgaactcggc acttttcaaa aaacaaccga aatgggtaat ggcggcagag ctggtggaaa
      601 ccactaaact ttgggggcga atggtcgctc gcattgagcc agagtgggtg gaaccgttgg
      661 cggtacacct cactaaatcc agttacagcg aaccgcactg ggcgaagtca aaaggggcgg
      721 taatggcatc ggaaaaagtg tcgctctatg gcattccgat tgtggcgagt cgccctgtga
      781 attatggctc gattgatcct gccgtcagcc gtgaggtttt tatccgctcg gcgttggtgg
      841 aaggcgaatg gcacaacaat tacaaatttt tcaaagaaaa tcaccgcttg atccgtgaag
      901 ttgaagcatt agaacacaaa tcccgccgcc gtgatatttt ggtggacgag caggtgctgt
      961 ttgagttcta cgatcagcga attggcaccg aagtggtatc gagcaagcat tttgatactt
     1021 ggtggaaaca ggcaagcaag aaagatcctg aactgctgaa ctttgaaaaa tcgttcctga
     1081 tcaacgacaa cgccaacctt gctagcgagc tggatttccc gaatttctgg catcaaggcg
     1141 atttaaaatt caaactgagc tatcagtttg aggtcggtaa agatcacgat ggcgtaacgg
     1201 tgcatattcc gctgtcgctg cttaaccaag tggaacccga aggctttgat tggcaaattt
     1261 cggggctacg ccacgagctg atcgtctcgc tgattaaatc tttaccgaaa tcgctacggc
     1321 ggaattttgt gccggcacca aattatgcgg acgccttttt agggcgagcc gagccgttta
     1381 aaaagtcgtt gctggacagt ctaagccacg aactacgccg aatgacgggc gtattggtgg
     1441 agcctgagca gtgggattta agccaactgc cgccacattt gcgaatgacg ttccgtgtga
     1501 ttgacgataa aggcaagaaa ctgcaagaga gcgaaaacct tgatgagctg aaatttgcct
     1561 tgaaagatga ggtgcagaac actctgtcta acattgccga tgacggtatc gagcaaaatg
     1621 gtgtgcatat ttggaatttt gccgaattac cacagttcta tgagcagaaa aaagcccatt
     1681 tcagcgtgaa agcctaccct gcgattgttg atgaacaaac agctgtgggg gtgaaactgt
     1741 ttgaaaccga gtttgaacaa gcaagagcaa tgcaagcagg acttcgccgt ttgctgttgc
     1801 tgaatgtgcc atcgccaatt aaatatctac acgaaaaact gccgaacaaa gccaagctgg
     1861 gcttatattt tgccccgttc ggcaaagtgt tggagctgat tgatgattgc attgcctgtg
     1921 cggtagataa gctggtggaa gagttcggcg gctttgtctg gacagaggaa aaattcactc
     1981 aactgcacga atttgtacgg gcaaatttaa acgacaaaac cgtagaaatt gccaaacagg
     2041 ttgaaaaatg cctcacactg gcatacgagc taaacaagcg gttaaaaggc aagctcgatt
     2101 ttacgatggc gtttgcgtta agcgacatca aaacccaaat cgaagggctg atttaccccg
     2161 attttgtcac caaaaccggc tacgcccgcc ttgcagattt atatcgttat ttaaccgcta
     2221 tcgaacgccg tttggataaa ctgctggtgg acagcaacac cgaccgagcc aaaatgctac
     2281 gggtggaagc ggtgcaagag gcatataaac agctccttgc taaattgcca aaatccaaag
     2341 cagtgccgga cgaagtgctg gaaattcgct atatgatcga agaacttagg gttagcctgt
     2401 tcgcccaaca gctcggcacc aaatacccga tttcggacaa gcggattttg aatgtgatta
     2461 atgaaataaa gtaatatccc ctatacaaca agcggtcaga taagtaaaaa attttgcaac
     2521 tctgaccgct tgttttctcg aatacctatt cctctcgctt cagaagcaaa cctgctacat
     2581 ttttttgatt aaaaaaatct caagataaaa attagaaaac taaatatatc agaaagtttg
     2641 atctttatca ttaaatagat gataattatt tgtaataaga agattaacca cgtaaaatag
     2701 tcttattttt tggaggtaaa atcatgtata aaataaagca ttcatttaac aaaacactta
     2761 ttgcaattag catctctagt tttttatcta ttgcatacgc tacagaatct atagagaatc
     2821 cacagcctat cattcagtta tctgagagta ttagtacgaa atacagcgga aaaggcgtta
     2881 aactaggtat attggacgag ggatttatgc ttaagcaccc tcgtcacagc caaaatattc
     2941 acccgattac acatcaatta acaacacctg atggtgaggt aagaacctat gaccctagtt
     3001 atatccaatt tgaggtaaag ccttttgaac aaaatggaga aaccgctttt gcaactttat
     3061 tcgaaactca cggagcaggc gtagcaggga tcatttctgc gaaggctgat aaaactattg
     3121 ggaatggcta tagcggtggt gtcgcaaaag gtgtagaact ttatgtgact tccaaatcat
     3181 atagaagaac tttagaagaa gtccttagag atgtccagaa agaattggaa aataaggata
     3241 atgaggagga agaggaagaa aaaaaaccta acttagctga gttgggaaaa gctgacttat
     3301 tcgtcagtaa agagaaggaa gtagtttttg agcgttctga gtgggcaacc gggctgaata
     3361 aattactgga taaaaaagtt tttgcaatca acaacagttg gaattctgat ccaattagtg
     3421 acgatattca cgaaatcgat aaattttatc aatccatcac acaaaataag caaaatccgt
     3481 tacttcaagc tattatgaga gcaaaagata atgatacatt attggtgttt gctaacggta
     3541 acgagagcaa aaaacaacca ggcattatga cattattgcc acgttatttt tctgagcttg
     3601 aaaaacattt aattgccgtt gctgcagtag ataataaaca acaaattacc gagtattcca
     3661 accattgtgg agcaagtaaa aactggtgtg tatccgcacc gggtaattta catctgttaa
     3721 atgcagaccc tgatgctaag aaaaatccgc aatatggatt atcaaaagat gaaggaacat
     3781 catttgcaac acctgttgtc accgggtcat tagcagtatt gaaagaacgt tttgattatc
     3841 tgacagctac ccaaattcgt gatactttat tgaccacctc tactgattta ggcgaaaaag
     3901 gggttgatag cgtttatggt tgggggctaa ttaacctgaa aaaagcaatt aatggcccaa
     3961 ctcaattctt aaatgatgaa actgtcaccg taactcgtga tgaccattgg aaaaacccac
     4021 tgtccagcaa atttaaagtg acaaaaaaag ggagcaaatc actaaattta gatggtgaga
     4081 attatttggc tgaagtagca gttgaacagg gtagattggc cttaaacggt aaaaccaagg
     4141 tgaaaacaat cagtaataac gcaactttag cggtaaatga aactgaagtc gaacaaaatt
     4201 attatgcgtc tgagcagagt caattggaag tattaggcaa atccggttta attgccaatg
     4261 ctcaagccaa tatacattta gctggctcat taaaaattga tgataaatta acagagaaaa
     4321 ctaaatcagg agatgtttca actactgtag tacagttgaa agataaagcg acttatcaag
     4381 gtggatttac acaattagtc gaaaacgaga atttagccaa acgagggtta atccaagatc
     4441 tctatttcaa agacagcgaa attatcgcaa aagtgaataa gccactaact gatgagaaag
     4501 ccgatacaaa cgggcaagcc ggtttagcat tattaaatgc gttaagaact acacctattg
     4561 cctatcgccg tggttggtat aacgattggc tgcaatctgc actagaacaa cgtaaattag
     4621 ataatctgca ctatgctgta tctaacaata tttatgcaga tagtctcgaa ttactacgta
     4681 gccaaaatgc caaaggctta acccaaacac agcaacattt atttacggca taccatacgc
     4741 cacaacaaac ggcagtttgg gctgaacatt tgaatcaaaa acaatcagct tcatcgaagc
     4801 ataccgatgt taaacactac caatcactat tgggagtaag ccacaaactg gcagataaaa
     4861 cgggacttag tgcaacactt tcacagcaaa aaaaccgctt agcaaaaccg ttttcacaag
     4921 ctaccttaaa gcaaaccgca ttaaatattg gcttacgtta tcatttagat gacgcttggt
     4981 ttagtgaagc tacattgcaa tttgctcgtc agaaatatca acaaagccgt cgatttgcta
     5041 gccatcagct aggtactgca gaaaccagag gttcaacact cggtggtgaa atgcggatcg
     5101 gttatcaatt tattccaaat caatggataa ttgaaccaag ccttggcgta caatggattc
     5161 aaacccaaat gaaggggtta aacgaaagcg gcgaacttgc gactcaaacg gctgcaatgc
     5221 gttatcgtga tgtgaatatt gttccaagcg tgaaattaca acgtactttc caacttgagc
     5281 aaggctcaat ttccccttat atcgggctaa attacttgca cagattaagt ggaaaaacga
     5341 ccaaaattac cagcgacatt gcaggaaaaa cactacatag tgaagcaacg gtgaaacgta
     5401 atcgccaatt aaatggtgaa atcggggtga aactgcatta taaaaactgg tttactacga
     5461 tgaatttaga ttacagccga gtaaaatcag caaatctatt tggctggaaa gccagcattg
     5521 gtttaacgtt ctaaaatagc cttgtggcat aagcaaatac gcttatgcca caaactcttt
     5581 atcttttctt tcc
//
LOCUS       DANLUT010000148         5591 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLUT010000148 DANLUT010000000
VERSION     DANLUT010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5591
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..665
                     /locus_tag="PXB38_002095"
     CDS             <1..665
                     /locus_tag="PXB38_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL5354370.1"
                     /translation="DKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAYEK
                     SVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTHII
                     IGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFLKA
                     VTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREFKN
                     NT"
     gene            694..1972
                     /locus_tag="PXB38_002096"
                     /pseudo
     CDS             694..1972
                     /locus_tag="PXB38_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1986..3287
                     /locus_tag="PXB38_002097"
     CDS             1986..3287
                     /locus_tag="PXB38_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL5354371.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3392..5458)
                     /gene="glyS"
                     /locus_tag="PXB38_002098"
     CDS             complement(3392..5458)
                     /gene="glyS"
                     /locus_tag="PXB38_002098"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL5354372.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
BASE COUNT         1542 a         1256 c         1113 g         1680 t
ORIGIN      
        1 cagataaatt agagtatctt catgatttag acaaagaaat tatgctgtct tatttctcat
       61 taagtgaagc aatagcaggg ttattaggag aattctgtga ggtggttatt cattcattga
      121 atgcctatga aaaatccgtt attaaaatca ttaacggaca tcatactaac cgaaaaatag
      181 gttcgcctat tacagataaa ggattacagt tactaaaatg ttaccaaaaa gatcaatcta
      241 atactgagct ggtttacttt tcacggttaa ataacggtaa cttagttaag tccaccacgc
      301 atattattat cgggcatgag ggcaaaccta tcggattatt ttgtattaat ttaaatttat
      361 cgacaccatt agataaaacc gttagctctt ttatgaatta cgatcctatt ccgcctcatt
      421 ataaaagtga aaactttatt actcacccaa aagaacttat tgaagaaacc tttctaaaag
      481 cagttactca cattgagcaa cacactacca aacattcaaa actctataag aaatccatta
      541 tcttctattt gtttgaaaat ggcatctttg agctaaaaga ggcagtacct attgtggcag
      601 aaaaactctc cctaaccagc cacgcaattt ataaacattt aagagaattc aaaaataaca
      661 cttaattata ctgttacgat ttaaggagac tctatggata ctcaaaaact ctcgcctgcc
      721 gaatttaaac aagcaacaaa atttgattct accgacttcg gctggatcat tatgagtatt
      781 ggtatggcta tcggggcagg catcgtcttt ttaccggtac aagtaggact tatgggcatg
      841 tgggtttttc tactttcttc tattatcgga tacccggcga tgtacctttt tcagcgtctg
      901 ttcattaata ctttagcaga atctccggaa tgcaaagatt accccaccgt tattagtggc
      961 tacctgggca aaaactgggg aatcttttta ggtgtacttt attttattat gttagtgatt
     1021 tggatgtttg tttattctac cgcaattaca aacgacagtg cctcctatct tcttaccttc
     1081 ggcattacca atacactact ctctgataat ccattttatg gcttagtgct aatctgtata
     1141 ttagttgcct tatcttctcg aggcgaaaag ctactgttta aaatatctac atttatggta
     1201 ttaactaagc tatttgtcgt tgccgcctta gggcttgcaa tgattggaat gtggcaactc
     1261 cataatatcg gtgcaatgcc tcctttcggc aaacttataa aagatgccat cattaccctt
     1321 cctttcaccc taacctctat actcttcttg caaactctca gcccaatggt aatttcttac
     1381 cgtgctaaag aacagtctcg tgaagttgcg cgctataaag ccctacgagc gatgaatatt
     1441 gcatttgcta tcttatttat taccgttttc ttttaagctg tctcttttac acttgcaatg
     1501 gggagagaag aagcgctcaa agcatacgag caaaatgttt ccgcattagc aattgcagcc
     1561 caatttttcc ctggtagttg ggcaacctat gtaggtgttg cattaaatat ttttgccgtt
     1621 atgacagcct ttttcggggt atattttagg ttttagagaa gccactcaag gcattgtgat
     1681 gaacctatta ttaagaaaat tcccggctga aaaaatcaat cctaattatg tgcagaaagg
     1741 gattatgtta ttttccattc tgctggcttg gagtgcgatt gtattaaatg caccggtttt
     1801 aagctttacc tcaatctgta gtcctatttt tggcttagtt gggtgcttga ttccggccta
     1861 tttagtctat aaagtgcctg cattattcaa atataaaggg ctagcactca atattattat
     1921 cattaccggc attttattat gtatttctcc attcctcaca tttttagagt aataaggttt
     1981 tatctatgaa tattcactgc gaaaaattag tacaatccat tttacatgca gtcaaccatg
     2041 aagttgtccc tgcattaggc tgtacagaac ctatttctct cgcccttgca tccgccattg
     2101 cacgccaata tttaggtcat ttaccagaac gtattgaggc aaaagtttcc cctaacttga
     2161 tgaaaaatgg gatgggagta gcagtaccgg gaactgcaac cgtcggattg cctatggcgg
     2221 cagctattgg ggcaatcgga ggggagcctg atggtggatt agaagtatta aaaaatatta
     2281 cgccagaaca ggttaagcaa gctaaagcta tgttaaatac cgataaagtg tctgtctcta
     2341 ttttcgaaac agaacatatt ctatattctg aagcaacact atttcaccaa gcgaatcgag
     2401 tatgtgttcg tattgctgaa caccatacca atgtcattta cattgaaaaa aacggacaaa
     2461 ctattttaag caaaccttgt gccgtcaata acgataatac tactgagatc tttgcttcac
     2521 tttcggcaaa agatatattt aatttttcta tgcaaatcga attggaaaaa attcgcttta
     2581 ttgagcaagc agcacaatta aattccgcac tctcacaaga aggattacgt gccgattatg
     2641 ggctacatat cggaaggaca ttgcaaaaac agattggtct aggtctaatc agtgatgatt
     2701 tgcttaatcg cattgttata gaaaccacct ctgcctctga tgctagaatg ggcggtgcaa
     2761 gtttacctgc tatgagcaat tcgggttcag gtaatcaagg aattacagca actatgccga
     2821 ttgttgtcgt tgcccgccat ttaaatgtca ctgatgagca acgcattaga gcactctttt
     2881 tatcacacct catggcaatt tatattcaca gcaagttacc gaaattatct gcactctgtg
     2941 ccgtaacaac cgcggctatg ggaagctgtg ccggcatagc gtggctgctc acagggaaat
     3001 ttgagaatat cagtatggca attagtagta tgatcggcga tattagcggt attatctgtg
     3061 atggtgcttc aaacagttgt gcgatgaaag tctccaccag cgtaacatca agctataaat
     3121 ccattctgat gtctatggat aatagccaag taacaggcaa cgaaggaatt gtcgaacacg
     3181 atattgatcg ttcaattaat aacttatgca gcattgcctc tcgtagtatg caatacacag
     3241 accgccaagt catcgagatt atggtgaata aaccaaaact taaataatcc cgcctttggt
     3301 aaaatttcaa gcaaaaaaga ccgcttgcag atcacaatta ctgcaagcgg tctattttca
     3361 ttaaaatttt gcaattattg caaacttatt gttattgcaa cagcgaaata tccgccactt
     3421 gcaggaacaa gccttgtagc gtgcttaaaa tggcgaggcg gttttgacgc agtttttggt
     3481 cttctgcatt taccattact ccgtcaaaga aggcatcaac cggttggcgg aggttcgcta
     3541 atttatccag cacagcggtg tagtcgccct gtgcaatcag cggttgaact tcggctttca
     3601 acgcaataac cgcctcggct aatgcttttt ctgctggctc tacgcaagct gaaacatcaa
     3661 tgtcgccaat tgcaatatcg gctttggcaa gaatgttact cacccgttta ttcgctgcgg
     3721 ctaaggcttc ggcactgtca agggtgcgga agtgagacac ggcacgcaca cgggcatcga
     3781 agtcggcagg cttggtcgga cggcgggcga gaacggcttg gatcacgtcc accgcaatgc
     3841 cttcgctctc ataccacgca cggaagcggc cgagcataaa gtccaccacg tcctcaacca
     3901 cgtctttgtt ggtgagttta tcgccaaata attgagcaga tttcgccact aaatcggtta
     3961 aatcaagcgg taaatttttc tccacaataa tccgcaacga gccaagtgcc gcacggcgta
     4021 gggcgaacgg gtcggcactg cctttcgggg cttgaccaat gccgaaaatc cctgttagcg
     4081 tgtcaaattt gtccgccaac gccaccgagc aagccaccaa tgaatttggc aagttatcgc
     4141 cagcaaaacg tggcatatac tgctcgttta acgccaccgc cacttcttca tcttcaccgt
     4201 cgtggcgggc atagtgcata cccatcacgc cttgggtatc agtaaattca aacaccatat
     4261 tggtcatcag gtcacatttt gagaggagac ctgcacgttt cgctttggtt tcatctgccc
     4321 cgatttgctt cgcaatttca cctgccaacg cttcaatgcg agcggtttta tcacgcaatg
     4381 tgccaagctg ttgctggaac aacacggttt caaggcgtgg cagttggtct tccaacttct
     4441 gttttaagtc ggttttgaag aagaactccg catcggtcaa acgtgggcga accacttttt
     4501 cgttaccctc gatgattttg cttgggtctt ccggattgat gttcgacaca aaaataaagt
     4561 gcggtaacaa tttgccgtct tttgaataaa tcgggaagta tttttggtcg cctttcatgg
     4621 tgtaaactaa ggcttccgcc ggcacagcaa ggaaacgctc ttcaaacttg gcggtgagta
     4681 cgttcgggta ttccaccaac gaggtcactt cgtccagcaa atcttcttca atatcggcaa
     4741 cgccacccaa agcggttgct ttttcctgtg attttgcaag aattaaggct ttacgctcat
     4801 tgaaatctgc taccacagat ccacgatctt tcaacagttg cggatattga tcggcgttct
     4861 caatttggaa ctcacgttca cctaagaaac ggtgaccacg aatagtacgg ccgcttttca
     4921 cgcctaagat ctcaccttcg atcaactccg ccccgaataa aagtgtcacg gtatgcacag
     4981 ggcggacgaa ctgctcggtt ttatcgcccc aacgcatcgt ttttggaatc ggcaagttcg
     5041 ccagcgattt ggcgataata tcgaccaaca gatttttagt cggctgacct tcaatcacgg
     5101 cacgatgcac caaccattcg cctttgtcgg tggcaatacg ctcagcttgc tctacggtaa
     5161 tcccgcagcc cttcgcccag ccttccgctg ccttagtcgg cttgccttcg gcatcaaacg
     5221 ctgccgacac cgccggccct cgtttctcaa cctctttact cggctggctt tccgcaaggc
     5281 tcaacacctt caccgccaaa cggcgaggag cagcaaacca ttccactttc tcaaacgaaa
     5341 gacctgcttg gtttaattcg ttttctacat tctccgcaaa tgcggtcgct aattttttga
     5401 gtgccttcgg tggcagctct tctgtgccga tctcggcaag gaagttttgt gttgtcattg
     5461 tttaaattac caatttttat ataaatgttc tttgatttct tctatttcta attgtgctat
     5521 attttcatta taaagctctc tagctaattt cctaattttg atgtctaaat cttttttata
     5581 atcttgagct t
//
LOCUS       DANLUT010000149         5537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLUT010000149 DANLUT010000000
VERSION     DANLUT010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(21..191)
                     /locus_tag="PXB38_002099"
     CDS             complement(21..191)
                     /locus_tag="PXB38_002099"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354373.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            complement(217..402)
                     /locus_tag="PXB38_002100"
     CDS             complement(217..402)
                     /locus_tag="PXB38_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354374.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            complement(419..494)
                     /locus_tag="PXB38_002101"
     tRNA            complement(419..494)
                     /locus_tag="PXB38_002101"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(459..461),aa:Trp,seq:cca)
     gene            911..1105
                     /locus_tag="PXB38_002102"
     CDS             911..1105
                     /locus_tag="PXB38_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354375.1"
                     /translation="MKLSTNELKALSDERRGVRAKSYKLSLETIALIEQLSKQLDMPQ
                     NQLIKLAVEKLQEQTNLTTN"
     gene            complement(1073..1513)
                     /locus_tag="PXB38_002103"
     CDS             complement(1073..1513)
                     /locus_tag="PXB38_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354376.1"
                     /translation="MLIDIKGVLNLWGSFVRFTDCKGYPTMQAFMRESPQEREKQRYL
                     PRLDDDTLAKVDRQIRKLDPAGKAKAYLANLAKPNDKREELESLESDELQFAILYLRY
                     VAGLENKPIWQKLSLSKGAFENELRLAERFVEGVLIGSEIRLFL"
     gene            complement(1503..1862)
                     /locus_tag="PXB38_002104"
     CDS             complement(1503..1862)
                     /locus_tag="PXB38_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5354377.1"
                     /translation="MVELILPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLATRNK
                     PKFGGQVEIECDVYFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRKYVKKLTFEDKGN
                     QKGGAVIVRIKERLNVN"
     gene            complement(1855..2883)
                     /locus_tag="PXB38_002105"
     CDS             complement(1855..2883)
                     /locus_tag="PXB38_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5354378.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDISPAAFGERTLLQPAPTDL
                     ATVKSGKVANFLANSTACKELAEFAKSAKVRSTLNQRDKYSNDLPYMRFVKSIQTCQC
                     RDGKYCHPERVIANIENGAVQLCWHHDKMRMDGEIPNEKLEALADKNWERFIAQQIRL
                     TLRKTQATVIEFADLVLFASIKGLLNELDDNALQHFLGYPALNNSGVNKESNIGFDDV
                     PNARANLKQWAEKLKLKVEPEPLAAFMAKPKLQRFEWRKWLQYVKAQPCMCCGKQADD
                     PHHIIGYGGAMGSKQHDLFVIPLCRIHHDELHRNVGKFEQDYGSQLELLIKFLHRALG
                     LGVLEIDG"
     gene            complement(3010..3603)
                     /locus_tag="PXB38_002106"
     CDS             complement(3010..3603)
                     /locus_tag="PXB38_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5354379.1"
                     /translation="MTDFDRDTWQTPKYLRNWLNHRYAWFHIDGCSNGKNALYSYWIG
                     KAAEGLDEDTLSGQIAEDFLADNLLDVILECVAEWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRLQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGLVTRQMPLNKIKEWGK"
     gene            complement(3614..4660)
                     /locus_tag="PXB38_002107"
     CDS             complement(3614..4660)
                     /locus_tag="PXB38_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL5354380.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSVGNQSDQARKNFRESSEKNPTDNNTNYKNNNDHTTPLNPPTGEPAP
                     AEVVLNYLNSALATLAAQLGERKPVGYSLKPWVKNIAARIRESSVADCCQVVDYLVAK
                     WGRDEKMREYLCPKTIFRQSNFADYLPKSKAWADNGKPVCVNGKWVAPAELEKRLIMP
                     TVEEVRALFQKSLSGNPFKALDFTNKRNLVMYHATINTKNKRPLERDLPMIISQEIKN
                     AVERIDRLKVPTFS"
     gene            complement(4657..5496)
                     /locus_tag="PXB38_002108"
     CDS             complement(4657..5496)
                     /locus_tag="PXB38_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5354381.1"
                     /translation="MNQLLNISEQKSSITMSSREIAELCEKEHRHVLRDIRAYVGAII
                     QMERGINVKSLDWSGKEGVELFGHTPIGGVICRYEVNPQNNQSYPIYYLDKSATLTII
                     SGYNILLRKKIIDRWQELETQVPQSSKTPHIPQTYAEALRLAADQAEQNQLLQLENKQ
                     KTEENNALKSYFEPGLTPAQFVKGLNGVNSNKINDYLRTRGWLYKEKHCWRVCSQVRD
                     KYLTESFKRIEVDPVERIEMTTYKPILLEKGAVKIFEAYLQGKLPMKADWNGKYYHSK
                     VAV"
BASE COUNT         1510 a         1319 c          978 g         1730 t
ORIGIN      
        1 ctctgtccca tcagaagcat ttaaccttgc ttcacgtcat tattactggc aaatggataa
       61 attttcctac ttcggaagtg ctgaacgcaa tctgatatac gtcgagatgg ccagcccacg
      121 gcatagcgat cttgagattt ttcttgatct tcttcaccgc tttttgactg agtatttagt
      181 tgttccgtca tagcaatccc tcattgattt ttgtagctaa gatagatctt caacccttgg
      241 gaaagggaaa tttggcggag ccttaattcc taacttttca tctcttaatc gagagagggc
      301 tttgcaacca gcaaaagtaa gtgttccagc ttcagaaaaa taaggcttat cttcaccaaa
      361 tttttctctg cattcttgaa ttgcatcatc aaggttatac ataacattta ctcacgtttg
      421 gcaagggtgg ctggactcaa accaacaacc aacgattttg gagaccgttg ctctacctat
      481 tgagctacac ccttaaaata aaaagcccca agcatttctg ctcagggctg taaaattctt
      541 tttaagttca ccacctatgc aatgaaccgc aacttaccac aaataataca ctttatactt
      601 aagctataca acacttttta atcaaacaaa tacaaaaaag cccataattt acaaaactat
      661 gggctttcta atgaaaattc acttgtttta ttcggtgttc cgaactataa taatctcact
      721 ttcaacggtt cgggttgaaa gtgagtgtga ggcttaatcc tcacgcttga agaaggaaca
      781 aacgatgttt aagtacattg tcctagttat cttcttgtta gttatcagct ccccagccta
      841 ctaacttgaa ataactcgct gggggcgaaa gctcccagct cttcaaacag ggtcatttta
      901 ggaatttaga atgaaattgt caaccaatga attaaaagca ctatctgatg aaagaagagg
      961 ggtgagagcg aaatcttaca agctaagcct cgaaactatt gctcttattg aacaattatc
     1021 gaagcagtta gatatgcctc aaaaccaact gattaagtta gccgttgaga aactacaaga
     1081 acagacgaat ctcactacca attaatactc cctccacaaa tcgctcggca agtcgcaatt
     1141 cattttcaaa ggcccccttg ctgagcgaca acttctgcca aataggctta ttttctagcc
     1201 ctgcaacata ccgcagatac aaaatagcaa attgcagttc atcactctcg agtgattcta
     1261 actcctcacg cttatcgttc ggtttagcta aattggcaag gtatgctttg gctttaccgg
     1321 ctgggtctag ttttctaatc tgccgatcaa ccttggctaa ggtatcatca tctaatcgag
     1381 gtaaatagcg ttgtttttct ctctcttgcg gagattcacg cataaacgcc tgcattgttg
     1441 gatagccttt gcaatccgta aacctaacga aactacccca taagtttaat acacctttaa
     1501 tatcaattaa cattcaaacg ctccttaatt ctcacaatga ccgcaccgcc tttttgattg
     1561 cctttgtcct caaatgtgag ctttttcaca tattttcggg agtcatcaac aatcactttg
     1621 ctatatacca acgaatctaa aatacactta cctaagttat ccaaatcccg atctcggtta
     1681 tcggggaagt aaacatcaca ctcaatttca acctgtccgc caaatttcgg cttatttcga
     1741 gtagcaagaa atgttgccca ttggtaatct ttacctcgtt tacacaccac tcgtcttgtt
     1801 ttgcttaccc accgccaata gtcatttacg cttggcggat agggcagtat taattcaacc
     1861 atctatttct aataccccca aacctaacgc tcgatgtaaa aacttaatca acaactctaa
     1921 ttgcgagccg taatcttgct caaacttacc cacattacga tgtaattcat catggtggat
     1981 tcggcagagt ggtattacaa ataaatcgtg ctgtttactc cccatcgctc cgccatagcc
     2041 gataatatga tgtggatcgt ctgcttgttt accgcaacac atacaaggct gagcttttac
     2101 gtactgcaac cacttccgcc attcaaaccg ctgtaatttc ggttttgcca taaatgccgc
     2161 caacggctcc ggctcgactt tcagttttaa cttttcagcc cattgtttta gattggctcg
     2221 agcattcggc acatcatcaa agccgatatt actttcttta ttcacaccgc tattattcaa
     2281 agccggataa cctaaaaagt gctgtaaggc attatcatct aactcattta acaaaccttt
     2341 gatactcgca aacaacacta agtccgcaaa ttcaatgacg gtagcttgtg tcttgcgtaa
     2401 ggttaagcgg atttgttggg cgataaatct ttcccagttt ttatctgcca atgcttctaa
     2461 tttttcattc gggatttcac cgtccattcg cattttgtcg tgatgccaac ataactgtac
     2521 tgcaccattc tcaatatttg cgattactct ttctgggtga cagtatttac catctcggca
     2581 ttggcacgtc tgaattgact ttacaaaccg catatacggc aaatcattac tatatttgtc
     2641 acgctgattt aacgttgaac gaacttttgc cgatttagca aactctgcca actctttaca
     2701 agcggtcgaa tttgccaaaa aatttgcaac cttgcctgat ttaaccgtcg ctaaatcggt
     2761 cggtgcaggt tgcaacaaag tccgctcacc gaaagcagca ggagatatat ctttaggcac
     2821 tttgtaaaac acaataccca cttcggtttg aaagtaaggg gtaagtagca aaccttccgc
     2881 cattattgcc cccatttctc ggtttcatca taggctttca cgaatagcat aaatacgcca
     2941 atacagatta aaaaaatcag tacgccaatc actgcaccaa taccaataaa tagttcccaa
     3001 taatccattt tatttacccc attccttgat tttattaagt ggcatttgac gagtaaccaa
     3061 tccctctatg aacggatcaa acacaacaat catcgagcct ttattattgc cctgagccgg
     3121 tttacctgtt actgggttaa taaattgtag tcgtcctgta cgccaagtgc ctttttcatc
     3181 gtgatagcct atgatgtcta taacctcatt agcgtgttgc tggataatgg tgtaccattc
     3241 tgtagtctta tccgctggta acagcattac cacaatatga ccggcttttt tcagctctgc
     3301 cgcccgttgt acaaacggca gtgggttgct gtatggcgga ttcacgaaaa tacgcagtaa
     3361 ttcgccccac tctgccacac attccaagat cacatcgagc aagttatctg ccaagaaatc
     3421 ctcggcaatc tgaccactta gcgtgtcttc gtccaagcct tctgccgctt tgccaatcca
     3481 gtagctatac aatgcgtttt tgccgttaga acaaccgtca atgtgaaacc acgcatagcg
     3541 atgatttagc caattacgca aatactttgg cgtttgccaa gtgtctctat caaaatctgt
     3601 cattgtctaa tccttacgaa aatgtcggta cttttagccg gtcgatacgc tcaacggcat
     3661 ttttaatctc ttggctgata atcatcggca aatctcgctc aagtggtcgc ttgtttttgg
     3721 tgttgatagt ggcgtggtac atcactaaat tgcgtttgtt ggtaaagtcc aacgctttaa
     3781 acggattgcc actcaatgat ttctggaaca atgctcgtac ttcttctacc gttggcataa
     3841 tcaagcgttt ctcaagctct gctggtgcaa cccacttacc atttacgcaa acaggcttgc
     3901 cgttatccgc ccaagctttt gatttaggca gataatccgc aaaattcgat tggcgaaaaa
     3961 tcgttttagg gcagagatat tcacgcattt tttcatctcg tccccattta gcgacaaggt
     4021 agtccaccac ttggcaacag tccgccaccg aactttcccg aatgcgtgca gcgatgtttt
     4081 tcacccaagg cttgagtgag taacccacag gcttacgctc gccaagttgc gccgccagcg
     4141 ttgccaaagc cgaattgaga taattcaata caacttcagc cggggcaggt tcccccgttg
     4201 ggggattaag gggggtagta tgatcattat tatttttata attagtatta ttatctgtcg
     4261 gatttttttc cgagctttct cggaaatttt tccgagcttg gtcggattga tttccgacac
     4321 tcggattttt ttccgactct cggatcggct cgaatttatt ccattcacaa cctttttcag
     4381 ttaaacggac ataatcttta ccgtccattt tgaagtggtc gataatgcct ttttctttca
     4441 acaccttata ttggcggtaa accgtatctt ctttgctaaa tacagcaggt aactcttcgc
     4501 acactttgct aaacgacatc cagtaatagg ttatgccgtc aataaccacc gcttttgccc
     4561 aactggaggc ttgattgatt aaatcgacca atgccccctg cgtgatgttg atttcccact
     4621 ccactaagcg gacgttgttt attgttgatg tgaatctcat accgccacct tactgtgata
     4681 atatttgccg ttccaatcag ctttcattgg taacttacct tgtaaataag cctcaaaaat
     4741 cttaaccgca cctttctcaa gcaaaattgg cttgtaggta gtcatctcaa tacgctctac
     4801 aggatcaacc tcaattcgct taaatgattc cgttagatac ttatcccgaa cttggctaca
     4861 cactcgccaa caatgctttt ctttgtataa ccagccacga gttcgcaaat aatcattaat
     4921 tttgttgctg tttacgccat tcagcccttt cacaaattgg gctggtgtta aaccaggttc
     4981 aaagtacgat ttcagtgcat tgttctcttc ggtcttttgc ttgttctcta actgcaataa
     5041 ctgattttgt tctgcttggt ctgccgccaa acgtaacgct tccgcatacg tttgtggaat
     5101 atgaggtgtt ttagaagatt gcggcacttg cgtttccagc tcttgccagc ggtcgataat
     5161 tttctttcta agcaaaatat tgtagccaga gataattgtc agcgttgctg atttatctag
     5221 gtaatagatt gggtaacttt gattattttg aggattaacc tcatatcgac atataactcc
     5281 gccaataggg gtatgtccaa aaagttctac accctctttt ccgctccaat caagagattt
     5341 aacattaatt cctctctcca tttggataat agcaccaaca taagccctaa tgtctcttaa
     5401 aacgtgacga tgttcttttt cgcataactc tgctatctca cgactactca tcgtaatgct
     5461 tgatttctgt tctgaaatgt ttaataattg attcatcgaa aatacctttc gttgtttagt
     5521 tttaaagagc caccgtt
//
LOCUS       DANLUT010000150         5509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLUT010000150 DANLUT010000000
VERSION     DANLUT010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(366..1108)
                     /locus_tag="PXB38_002109"
                     /pseudo
     CDS             complement(366..1108)
                     /locus_tag="PXB38_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1279..1617)
                     /locus_tag="PXB38_002110"
     CDS             complement(1279..1617)
                     /locus_tag="PXB38_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5354382.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            1875..3773
                     /gene="dnaK"
                     /locus_tag="PXB38_002111"
     CDS             1875..3773
                     /gene="dnaK"
                     /locus_tag="PXB38_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL5354383.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGEKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFKKEQAVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADASGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALSDAGLSVSDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     EEVEQMVRDAEANAEADKKFEELVQTRNQADGIAHATRKQITEAGDALNADDKAKIDA
                     AIAELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKTQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3915..4217
                     /locus_tag="PXB38_002112"
     CDS             3915..4217
                     /locus_tag="PXB38_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354384.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATEMENSNTPILMDDF
                     VWFEQIPTTEALLVDTWSVIENRAKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            4383..>5509
                     /gene="dnaJ"
                     /locus_tag="PXB38_002113"
     CDS             4383..>5509
                     /gene="dnaJ"
                     /locus_tag="PXB38_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL5354385.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGSGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFD"
BASE COUNT         1812 a         1091 c         1181 g         1425 t
ORIGIN      
        1 ccttattttt tatgaaaaat cttataatat tgaatattta ctccagtttt aatcgagaat
       61 catgttcttt tttattttgt tattctcttt aggtataaaa aaacccggta aataccgggc
      121 ttttatttca atgagttatc caacttgcta gagcgattac cgcaataaaa ataaataacc
      181 aaataagttg taattttacg cttttgcggt tgatctcctg gttgtgtaat cggcgctgtt
      241 ctaacttttg ccgatatatc actaaatcgg cttctttaaa cgagaagcca caatgtatgc
      301 aatgttctaa actgtcgcta atacgctttc gacactctgg acaacggtgt aatgccataa
      361 ttacctcaat ttattacttt gcataatcgg ctatccgtac attgttcaat atgaacatga
      421 tagtattgat gagtatcacg attgaaaaac aagaaatatt gattacctct tatttttgtt
      481 cccataatgt agccgttatc actgttggtg gataatatgt agtatttttg attctctatt
      541 tcgatgtaat cataggtagt tcttagtccg gcacgaaata accaatatgc aatgagagca
      601 aactgaaata gagaaaaata aagatgttaa acagagcaaa acttcctcct aatagcatct
      661 ttctaaagtc tagatcaaac ttggtattat tccatctctt acggaagaag aatacactca
      721 cgccacttac aaaaatatag ataaatgaga tataaatagg cactataccg gtaaataagt
      781 aaaaagtgag aataaccggt actgtaaata cagaaaccaa cacaatcacc cttaaccaac
      841 ctagatttcg gaaataatgc agctgaaaaa ctttatttag taagctataa cctagcgcat
      901 aacacaagaa taagataact gaagtaccga atacataagc caaacttctt gccatactgg
      961 cattgccgat ttcaacatgc caccaagggt agccatgaaa tatggcttgt ccccaaccgt
     1021 aacagtaagc ggtagcaaaa ctagttaatg taaaaaatgc aagagaaaat gaagaattga
     1081 taattttatt aatgtgttta tttagcataa caaagaatgt ctatttccat taaaacctaa
     1141 ctatttttga ttactataat aacccgtatt acacaaaaaa caaacattta attcacacca
     1201 aattagaaaa tttgctttag taaggttgaa aatataactc taaaacacga taataaaaag
     1261 cttctctgct aacaatggct agactgcttc atcgtcagtt tcgccggtac gggtgcggat
     1321 aacttgttca atattcgcta cataaatttt gccatcaccc acttgcccag aataggatgc
     1381 attgagaatg gcatcgatca cttcatcggt ttggtaatta gaaaccaata tctccacctt
     1441 aattttagga cgaaagtcaa tgcggctcat ttggctaagc tcttgttcgg tatgcccata
     1501 ttggcgtcca aagcctttta cttcggtaat agtcattcct tgaataccga tttctgaaag
     1561 tgcatcttgc acttggtcta attttgaagg ttggataatg gtagtaatca gtttcatatt
     1621 atatccttct ctgtttgagt tgccgtaagt ataaaaagct attgaggggt atgcaaggta
     1681 ggaggtattt tctccgtgaa atattctgcc aaatctcccc cacatacaag cggttacttt
     1741 ttccaaaaat tttgcaattt ttttattttt gcccttgaac agtgcatttt cgcccttatt
     1801 tatggtttcg tctgaacggg aaatgcaatc ccgtttctta ttcaaactga atttattatt
     1861 agaggaatca taaaatgggt aaaatcattg gtattgactt aggtacaaca aactcttgtg
     1921 ttgcggtaat ggacggcgac aaacctcgtg taattgaaaa tgcggaaggg gcaagaacaa
     1981 cgccatctat catcgcttac accgataaag aaaccttagt tggtcagccg gcaaaacgtc
     2041 aggcaattac taacccgaaa aatactttat ttgcaatcaa gcgtttaatc ggtcgccgct
     2101 ttactgatgc agaagtacaa cgtgatattg aaattatgcc gtttgaaatc agcaaagcag
     2161 acaacggcga tgcgtgggta acggtaaaag gcgaaaaatt ggcaccacca caaatttctg
     2221 ctgaaatctt gaaaaaaatg aagaaaaccg cagaagattt cttaggtgag ccggtaaccg
     2281 aagcagttat tactgtgcct gcatacttta acgatgcaca acgccaagcc actaaagatg
     2341 cgggtcgtat tgcaggttta gatgttaaac gtatcattaa cgaaccaaca gcggcggcac
     2401 ttgcctacgg tttagattct aagaaagaga accaaactat cgccgtttac gacttaggtg
     2461 gtggtacatt cgatatttca attatcgaaa tcgacaactt tgacggcgag caaacctttg
     2521 aagtgcgtgc aaccaatggt gacacccact taggtggtga agatttcgac aaccgagtca
     2581 ttaactacct agtagaagaa ttcaaaaaag aacaagcggt tgatttacgc aacgacccaa
     2641 tggcaatgca acgtgtgaaa gaagcggcgg aaaaagcgaa aattgagctt tcttcggcac
     2701 aagaaactga agtaaatctt ccgtacatca cagcagatgc aagtggtccg aaacacttaa
     2761 acatcaaagt gactcgtgcg aaattagaat ctttagttga agatttagta aaccgttcat
     2821 tagagccatt aaaaacggct ttatctgacg ctggtttatc agttagcgac atcaacgatg
     2881 taatcttagt gggcggtcaa acccgtatgc cattagtaca gaaaaaagtg gcagacttct
     2941 tcggcaaaga accacgcaaa gacgtgaacc cagacgaagc ggtagcaatc ggtgcagcag
     3001 tgcaaggtgg cgtattaagc ggctcggtaa cagacgtatt gttattagac gtaaccccac
     3061 tttcattggg tatcgaaaca atgggcggcg tgatgacaac cttaattgag aaaaacacta
     3121 cgatcccaac caaaaaatcg caagtgttct caacagcgga agacaaccaa tctgcggtaa
     3181 ccatccacgt gttacaaggt gagcgtaaac gtgcagcgga taacaaatcg ttaggtcaat
     3241 tcaatcttga aggcatcaac ccagctccac gcggtatgcc acaaattgaa gtaactttcg
     3301 atattgacgc gaacggtatc atcaacgtgt ctgcgaaaga caaaaacact ggcaaagaac
     3361 aacaaatcaa aatccaagca tcttcaggct taagcgatga agaagtagaa caaatggtgc
     3421 gtgatgcgga agcgaacgct gaagcagaca aaaaatttga agagttagtt caaacccgca
     3481 accaagcaga tggtattgct cacgcaaccc gtaagcaaat tactgaagca ggcgatgcgt
     3541 taaatgcaga cgacaaagcg aaaatcgacg cagccattgc agaattagaa accgctgcaa
     3601 aaggcgaaga caaagcggag atcgaagcaa aaatcgaagc gttaatcaaa gcttcagaac
     3661 cgttaatgca agcagcccaa gcaaaaaccc aaggcggcga gcaaccacaa caatcccaaa
     3721 aagatgacgg cgtggtcgat gcggaatttg aagaagtgaa agataataaa taatcttgcg
     3781 taacttgtag gggcgaaata tctttcgccc cttttgtgta gatatatacc acctagcacg
     3841 agccgtgcta ggttacacat aattcagccc ctttggggct gtgcaagcgg tgcttttcaa
     3901 aggaaatttt gcaaatgcta aaactctacc ctacaacgga aaatgtacag ccaccgtttt
     3961 ataaaattta cgatcataaa agtggtgaaa cggtcattgc tacagaaatg gaaaacagca
     4021 ataccccgat tttaatggac gattttgttt ggtttgagca aattccaacc accgaggctc
     4081 ttttggtaga tacttggtct gtgattgaaa accgtgctaa acaaggcttg ctcaaacgag
     4141 cttacaccaa agattttgaa aaacatttag cagacggcaa agtagaaatt tatattgcgg
     4201 tgaatccgca ttgttaggct ttgatagcgc aagcgtccac gcttgtgctt aaccatcaaa
     4261 tttggtacaa gcgtggacgc ttgcaccatc ttgtctagaa cctattttac tataaaacgc
     4321 tctcccacaa ggggcgaggg caagcggtca aaaacagaga aaaatttaca aacggaacaa
     4381 caatggcaaa gaaagattat tacgaagtcc ttggactgtc taaaggggca agcgagaaag
     4441 acatcaaacg agcatataaa cgtttggcgg caaagcatca cccggataaa aaccaaggca
     4501 gtaaagagtc ggaagagaaa tttaaagaga ttaccgaagc ctatgacgtg ctgaccgaca
     4561 gcgagaaaaa agcgatgtac gaccaatacg gtcacgccgc ctttgaacaa ggcggtgccg
     4621 gtgcaggcgg attcggtggc tttggcggcg gtggtttcgg tggttttgaa gacatcttca
     4681 gcgaaatgtt tggcagtggc tttggtggcg gtggacgtcg ccaacgtgtg gtacgtggcg
     4741 atgatttacg ttacgacatc gagatcaccc ttgaagaagc tgtgaaaggc tgtaaaaaag
     4801 atattcgcat tcaaacctta gctgaatgtg atacttgtca tggtacaggg gcggaagcag
     4861 ggagcaaagt ggaaacctgt tcgcattgtc acggctccgg cagagttcgc cgtcagcaag
     4921 gtttctttgt gactgaggca gtttgtccaa gttgtcacgg tacaggtaaa cgcattgaaa
     4981 aaccgtgccg ttcttgccac ggcgatggac gtgtacagaa agcgaaaaac ctctctgtta
     5041 ccattccggc aggtgtggat accggtaatc aacttcgctt atcgagagag ggagctgcag
     5101 gcgaaaatgg cgcaccggca ggcgatttat atgtggtgat tcacgttaaa gaacacgata
     5161 tttttgagcg tgacggttcg aatttatact gtgaagtgcc gattagcttt actcttgcag
     5221 ctttaggtgg tgaaattgaa gtgccaactt tagacggcaa attaaaactc aaaattccgg
     5281 cagaaactca aaccggtaaa ctattccgtg tacgaggcaa aggggtaaca agccctcgtg
     5341 gtggctacgc aggggattta atctgcaaag tggtggtcga aacgcctgtg aatttaaccg
     5401 aagaacagaa agcactatta cgacaatttg aagagagttt agaaggacaa ggtaaacatc
     5461 gtccgaaaca cgaaggtttc tttgatggtg tgaagaaatt ctttgataa
//
LOCUS       DANLUT010000151         5433 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLUT010000151 DANLUT010000000
VERSION     DANLUT010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5433
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..241
                     /locus_tag="PXB38_002114"
     CDS             <1..241
                     /locus_tag="PXB38_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5354386.1"
                     /translation="VFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTNHQYD
                     YRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            225..572
                     /locus_tag="PXB38_002115"
     CDS             225..572
                     /locus_tag="PXB38_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354387.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(613..1773)
                     /gene="trmG/rlmN"
                     /locus_tag="PXB38_002116"
     CDS             complement(613..1773)
                     /gene="trmG/rlmN"
                     /locus_tag="PXB38_002116"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL5354388.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGK
                     VTIEYVMLDHVNDSTDHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            2033..2929
                     /locus_tag="PXB38_002117"
     CDS             2033..2929
                     /locus_tag="PXB38_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL5354389.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            2942..3685
                     /locus_tag="PXB38_002118"
     CDS             2942..3685
                     /locus_tag="PXB38_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL5354390.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(3742..4551)
                     /locus_tag="PXB38_002119"
     CDS             complement(3742..4551)
                     /locus_tag="PXB38_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5354391.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(4544..5404)
                     /locus_tag="PXB38_002120"
     CDS             complement(4544..5404)
                     /locus_tag="PXB38_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5354392.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
BASE COUNT         1773 a         1164 c         1082 g         1414 t
ORIGIN      
        1 ggtattccag cgtaaagcct taaagcaatt acgaaaaatc ccaactggtg cagaaattcg
       61 ccgaaaatgt gatgatttag cttactttcc ctactgtgcc aatattaagg cattaacaaa
      121 tcatcaatat gattatcgct ttcgggtcgg aaattaccgt atttttttca atattgaagg
      181 cgaaacgatg aatattgtgt ctatcgaaga ggttaaaaaa cgagatgaaa gaacttacta
      241 atattcaata tttaaataat gaagaaggaa aacctgcctt tgccgtactt ccgatagcaa
      301 cacttgaatg gcttaagcag aaagcaaata ttaaaaccgc aatagagacc ggtattccat
      361 ctgctgttgc tggaattgca ttagataata actactcagc tctgcgtgct tggcgggaat
      421 atttaggttt aactcaagaa gaggtggcac aacgcttggg gatttcgcaa tcagcttata
      481 gccaacacga aaatgcaaaa aatctacgaa aaacgacccg cataaaaatt gcctatgcgt
      541 tgggtttaaa tgaagagcaa ttagatttct aataacaaaa aggcaggaac ctctgccttt
      601 tcactattca gattaatggg ttttaaccgc aataccctgc ccaaatttac gtttttcaag
      661 ggtacgttta gtgcggtcaa tcacatcgcc ggcaagctgt ccgcaagcgg catcaatatc
      721 atcgcctcgt gttttacgca ctgttacagt aaaaccgtac tccatcaagg ttttttggaa
      781 acgatccacc cgagagttgg agctttttcc ataaggtgct tccgggaacg ggttccacgg
      841 aatcaagtta attttacacg gcgtgttttt caatacttca gcaagttggt gggcgtggtc
      901 ggtgctgtca ttaacgtgat ctaacatcac atattcaatc gtgaccttgc cgtggttggc
      961 gttagaaact tcaaggtatt tattcaccga atccatcaac attttgatgt tgtacttttt
     1021 attaatcggc actaattcat cacgcagttc atcgttcgga gcgtgaagtg aaattgccaa
     1081 cgccacatca atttgctcac gcattttgtc taatgccggc accacacctg aagtggaaag
     1141 cgtgacacga cgtttagata agccgtaagc aaaatcatct aacatgattt ccattgccgg
     1201 aatcacgtta ttcatattca gcaatggttc acccattccc atcatgacca cattggtaat
     1261 cgggcgaaca ccggtcacgc caaaattgcc gataatttta gaagcacgcc acacttgccc
     1321 gataatttcc gccacgctta agttacggtt aaagccttgt tgagcggttg agcagaaggt
     1381 acaagccaag gcacagccta cttgtgaaga aacacacagg gttgcacggt catcttcagg
     1441 aatatatacc gtctcgattt gctgatcgcc cacttgcatt gcccatttaa tcgtaccgtc
     1501 tgcagaacgt tgttctaccg ccacttcagg ggctttaatt tcggcaatac gctttaattt
     1561 ttcacgcaat actttattga tattgctcat attatcgaaa ttttcttcgc caaaatggta
     1621 gatccatttc attagctggt cggcacggaa aggtttttca cccatttctg caaacagttc
     1681 tcgcatttct tgacgattaa gatttaataa attgattttt tcttttggtt gttcagcaga
     1741 cccacagcct gcattggtaa tcagttctga cataaagttg aaagcctcgt tattacacgg
     1801 attacggcaa aaggttaggg caaatgccct tattttgcga ttggatttta aagcgtgcaa
     1861 ttttactggc tcttgaggga ttaggctagt aatttttaat caaaagagtt gaattgcctg
     1921 agtaaactta tcaagaataa ccttataaaa acaagactat ttacatcatt cccaatgttc
     1981 tatagaatag ctttcgataa ttctcattct caataacaaa aggaggctaa aaatgaaact
     2041 atcaacaatt aaaaaagcat tggtattaac ctttggttta agtgcagcga tggcaatggc
     2101 agagccgttt aaagtagtta ccacttttac cgtgattcaa gatattgcac aaaatgtcgc
     2161 cggcgataaa gccactgtgg aatccattac taaaccgggt gctgaaattc acgattatca
     2221 accaacacca aaagacattg taaaagctca aaaggcagac ttagtgttat ggaacggtat
     2281 gaaccttgag cgttggtttg aacgtttctt tgaaaatgta aaaggcaaac cggcggttgt
     2341 cgtcaccgaa ggcatcaccc caatgccgat taccgaaggt gaatataaaa atctaccaaa
     2401 tccgcacgct tggatgtcca ccgataacgc attaatttac attgaaaata ttcgtgcggc
     2461 tttagtaaaa tatgacccac aaaacgcaga cacctataat gccaatgcaa aagcctatgc
     2521 tgaaaaagta aaaggtattg ctgagccact ccgccaacgt ttagctttta ttcctgagca
     2581 gcaacgttgg ttagtaacca gtgaaggggc atttagctat ttagcgaaag actacaactt
     2641 aaaagaactt tatttatggg caatcaatgc ggaagagcaa ggttcgccaa aacaagtgaa
     2701 aaaagtgatt gatggtgtaa aagccaacaa aatccctgtt gtgtttagcg aaagtaccgt
     2761 ttccgacaaa ccggcaaaac aagtggcgaa agaaaccggt gcattatacg gtggcgtaat
     2821 ttatgtggat tcactttcag agaaagatgg tccggttcca acctatttag atttgcttaa
     2881 agtgactatc ggcaccattg tcgaagggtt cgaacgaagc aaaaaataat aagatttagc
     2941 aatgacaact gtttcagcct ccatttccgt cgaaaattta tcggtccgtt ataataacgg
     3001 acatatcgct ttgcaagatg tctcgtttca tctggaaaac ggcacaattt gtgcattaat
     3061 cggcgtgaat ggaggtggaa aatccactct gtttaaaagt ttaatggggc tggttaagcc
     3121 attaaccggc tctgttaagc tgagtcagct cccgattgct aaagccctca aacaaaattt
     3181 ggtttcctat gtgccacaaa gtgaagaagt ggactggcaa tttccagttt cggtttacga
     3241 tgtggtaatg atggggcgat acggctatat gaattttcta cgccgcccaa gccaaaccga
     3301 taagctcaaa gtagagcaag caatgcaacg ccttgatgtt ttacatctca aagacaggca
     3361 aatcggcgaa ctttccggcg ggcaaaaaaa acgggtattt ttagcccgtg ccttagctca
     3421 agaaagtaaa atcatcttac ttgatgagcc tttcaccggt gtggatgtta aaaccgaaaa
     3481 tgcgattgtt gagctactta aacagcttaa aaatgagggg catttgattt tagtttccac
     3541 ccacaacctt gccagcgtac caagcttttg cgatcaggtt ttgatggtca atcgcacgct
     3601 actggcaaaa ggtaaaacgg aagaaatctt taataatcaa aatttagaac gggtgttcgg
     3661 cggtttattg cattatcaaa agtagtgttt cagcaacaaa tcacaaacaa atagggaggc
     3721 aaatgcctcc ctatttttgt atcaatgaat cttagaatat gcaaaactga ggaaaaaaat
     3781 ggccgcttgc acgagaataa tcgtcggccc tgttgcggca tcaatatggt agctaagcaa
     3841 cgtgccgaat accgatgaaa atatcgcaac gcctaaggca atcagtaaca tactatcaaa
     3901 ccgcttagtc agcaggtaag cagtgatccc cggggtaatc aacattgcca ccactaaaat
     3961 cacgcccacc acttgcattg cactaataat agttaaagca agcaaggaaa gtaaaccata
     4021 atgcaataat ctaaccggta agcctgctac tttggcttga ttaacatcaa agcaatagag
     4081 caagaagtct ttgcgtttcg ccaccatcac cacaaaggta aagaggctta tgagtaaagt
     4141 ctgaagcaaa tcgcttttgg ttacgcctaa tagattacca aataaaatat gggttaaatg
     4201 ctcaccggta ttaaaggcgg taaacagcaa gatcccaaag gcaaacatac ctgaaaatac
     4261 aatccccatt accgtgtctt ctttcaagcg actattttct tttaaatagc ccaccgataa
     4321 ggcacagcct aatcctgaaa aaaacgcccc tattgagagt ggtaacccgg caagtgagga
     4381 aatcaccaca ccgggcagaa cagcgtgcga aattgcatcg cccattaaag accagccttt
     4441 cagcaccaga tagcaagata aaaccgcact cacgccagca actaaaattg cggtaattaa
     4501 cgcaatttgc ataaattcaa attgcaacgg ctctaaaatc caattaagca ttttgaacct
     4561 ccacacggtg caatttccgc ttttgagtaa tcaagccata tttaggagca aagcagaatg
     4621 cgaataagaa aattaaggtt tgtaagcaca caattaccgc accggttgca ccgtctaaaa
     4681 agtagcttaa atatgcccca atccctgatg tcagcgtgcc gataagcatt gcgatcagca
     4741 ctaatctagg gaaacggtcg gtaagtaaat aagcagttgc tcccggcgtg acgaccatcg
     4801 caataaccaa aattgcccca accgtttgca gagccactac tacacaggca cttaataagg
     4861 taaagaaaat cactttatag cgtaatggcg aaagcccgac tgacaatgcg tggtgttcgt
     4921 caaaaaagac gagtagcaaa tccttccaaa ataggattaa acccagtaac gaaatcgcaa
     4981 taatcagtac cacctgccac aagtcatcat cagcaatgcc taaaatattt cccattacaa
     5041 tcgaattaac atcaaccgat gttggattga gggaaacaat aaacatacca agcgcaaaaa
     5101 aagtcgtgaa aataaagccg ataaccgcat cttctttaat tttcgtcagg ctttttaccc
     5161 aaagaatcga taatgccgcc aaaatcccgg aaaaaaacgc accaaaggcg tagggcaatt
     5221 ttagtgcata agcgatggca acacctggca ctacagcgtg tgataaggca tcaccaatca
     5281 aagaccagcc ttttaacatc aaaaaggcgg aaagaaaagc acaaactaac cccacgccca
     5341 tactgacaaa aatcgctttt tgcatatagt tgtaggtaaa aggctctaat aaaagatcaa
     5401 gcataaaatc ctaacaagtt gttgataata gtt
//
LOCUS       DANLUT010000152         5336 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLUT010000152 DANLUT010000000
VERSION     DANLUT010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5336
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            41..304
                     /locus_tag="PXB38_002121"
     CDS             41..304
                     /locus_tag="PXB38_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354393.1"
                     /translation="MSKMKSYLYHNLIAIDQLFNALTGGAADETFSSRCYRGAVLAEN
                     PKKRWRFWYAFVNGLFFDKNHCKTAYESEVKRKQYPPEFTEIT"
     gene            405..1586
                     /locus_tag="PXB38_002122"
     CDS             405..1586
                     /locus_tag="PXB38_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL5354394.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESEDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLAVAKKLNAFAFISD
                     NGATTKEQAYAYRQNFSQREGMMIFGDWQSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKPVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLTWAVDMPLTPLRVKTMLEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            1595..2101
                     /locus_tag="PXB38_002123"
     CDS             1595..2101
                     /locus_tag="PXB38_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5354395.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETNEVTQPKLAMQLEDYRAGGMI
                     APVGINMGLEKLELEFKTGGHEDDLIKLFGGTISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGNDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            2182..2496
                     /locus_tag="PXB38_002124"
     CDS             2182..2496
                     /locus_tag="PXB38_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5354396.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            2520..2636
                     /locus_tag="PXB38_002125"
     CDS             2520..2636
                     /locus_tag="PXB38_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5354397.1"
                     /translation="MADIATVFHWTPNAFDEMTIVELGQWREKARLRSGVES"
     gene            2697..3083
                     /locus_tag="PXB38_002126"
     CDS             2697..3083
                     /locus_tag="PXB38_002126"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354398.1"
                     /translation="MMILFLIWLADFIGKVHVIINVFFLLAIILCIVGGITFCANSSE
                     YDKAEIKWHNWGKTKVYLAIKVAIASAIIGAIIPSKNTYYAMVGVYVGQEIIANPTSQ
                     RLFDKSIQAIELKLDEVINSDLKKDK"
     gene            3083..3535
                     /locus_tag="PXB38_002127"
     CDS             3083..3535
                     /locus_tag="PXB38_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354399.1"
                     /translation="MLQQFAMMSLGYFVFMRSTIPYQDTSREMNWSHVQNDVVGAMPK
                     NQFTGKAGETFEISGELRPEITGGKLSILALEMMAEQGTAYPLISGSDFMILGWFVIE
                     RISVQSTTFFADGTPRAISFSMTLKRVDDSLLTNIVDEITGFVDGLIS"
     gene            3519..4757
                     /locus_tag="PXB38_002128"
     CDS             3519..4757
                     /locus_tag="PXB38_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL5354400.1"
                     /translation="MDLLAKLTNHNHRTPTVSVTVRPKPSKGNEGEKAKDISSLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQDSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPIVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKPLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYISQQSA
                     INACKNHFAKLERGVATFSLTLAEGNADLIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(4939..>5336)
                     /locus_tag="PXB38_002129"
     CDS             complement(4939..>5336)
                     /locus_tag="PXB38_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354401.1"
                     /translation="PFKYNKADEAMHVIANNIIRKKTAVANAILALNEVDSRKSSGVQ
                     LCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFNIWYFYDPT
                     KGPRIVRTRETKLKYPLLKKKEQTFQPAR"
BASE COUNT         1617 a         1109 c         1211 g         1399 t
ORIGIN      
        1 tatttggcgg ggtggacaaa aaactatgag gactttttaa atgagcaaaa tgaaaagcta
       61 tctctaccat aacttaattg ccatagacca actctttaac gctctcaccg gcggagcagc
      121 ggacgaaaca ttttctagcc gttgctaccg tggtgcagtg cttgcggaaa atccgaaaaa
      181 acgttggcgt ttttggtatg cgtttgtgaa tggcttgttt tttgacaaaa accattgcaa
      241 aacagcgtat gaaagtgaag taaaaagaaa acagtatcct cccgagttta ccgaaatcac
      301 ttaatcctgt taaaccccat ttcacagccc gaaccgctcg caacccgagc ggttattttt
      361 taaagtctca tctgttattt aaccttccca acacaaggat aactatgtca attttagata
      421 cctatctaca cggcgttgag gtggttgagg ttaatgcagg tggtgtcacc atttccaccg
      481 ctgcaacctc tgtcattggg gtagtttgca ccggagacca agccgatgca gaaacctttc
      541 cgcttaatac gcccgtttta attactaacc cgttaaatta ccttgaaaaa gcaggtagca
      601 ccggcacgtt acgccgcaca ctgaattcga ttggctcaat cgttaaaacg ccaacggtga
      661 tcgtgcgagt tgccgagtcg gaagatagcg acaccttaac cgcaaatatt gtcggcacgc
      721 aggaaaacgg caaatttacc ggtattaagg cgttattaac cgctcaatca accgtgtttg
      781 ttaagccgaa attgctttgt gtgccacagc acgataatca agcagttgca accgaattat
      841 tagccgttgc gaaaaagctg aatgcctttg cctttatttc agacaacggt gcaaccacca
      901 aagaacaagc ctatgcttat cgccaaaatt tctcccagcg tgaaggtatg atgatttttg
      961 gtgactggca atcgtataac accgacaaaa aagcctatga taccgattat gcagtggccc
     1021 gagcttgtgc gttgcaagcc tatatcgaca aaactgtcgg ctggcataaa aacatctcaa
     1081 acgtagagct agacggtgta accggtatca ctaaaccggt agagtttgat attaacgaga
     1141 gctcaaccga ggcaaactac ctgaacgaaa aaggcattac catttgctta aaccataacg
     1201 gtttccgcta ttggggttcc cgcactcttg ccaccgatac ccgctgggcg ttccagcagt
     1261 ctgtgcgaac agctcaaatc attaaagaga ccattggtgc aggcttaact tgggcggtgg
     1321 atatgccact cacaccgcta cgagtaaaaa caatgcttga ggcgattaac aacaagctcc
     1381 gctcttgggc atctggtgat gaccctcgca ttttaggtgc tcgtgtgtgg gtagctgaag
     1441 agatcaccgc agatattatc aaatcaggca aatttgttat taaatacgat taccattgga
     1501 ttccgtccct cgaaagccta ggcttagagc aacgggtcaa tgatgaatat gtagtggatt
     1561 tagtcaatac acttaaagcg ttatagaggt aaaaatggga ttaccggcaa aacttaagaa
     1621 ttttaatttt tcggtggacg gcacaagcta tttgggcgaa accaatgaag tgacacagcc
     1681 gaaactggct atgcaacttg aagactaccg tgcaggcgga atgattgccc ctgtgggtat
     1741 caatatgggt ttagaaaaac tggagcttga atttaaaacg ggcggacacg aagacgattt
     1801 aatcaagtta ttcggtggga caatcagtgg taatgcgttc cgtttcaacg gtgcatacca
     1861 acacgatgat gacgattcag tcgatgcggt ggagttagtc tgccgtgggc gaatcgctga
     1921 aattgacgaa ggctcaagca aagccggtaa tgataccgag catagctata aagcctcgct
     1981 aacctattac aaaaaaacgg tgaacggtgt cgatattatc gaaatcgaca ccctcaacca
     2041 aatttacatt gtcgatggca aagaccgctt agcggaaatt cgcaaggcga tgggtttata
     2101 gatttccccc taaattttcc ccaaaagccc cttccccttt tttcaagggg cttttaacga
     2161 taaataatta aggattaaac aatgaaaaaa gtaacattaa aacaaggcat tttgcgtggt
     2221 gaaaaacgta ttaccgagat tgaggtgcgt aagccattaa ccaaacaact gcgtggcaca
     2281 aatcttactt cattaatgca gttaagcgtt gatgagtggt gtattgtact gccacgcatt
     2341 accacgccaa aattagacaa agccgatttt gccacaatgt cggcagcaga tttacttaaa
     2401 ctttccggca aagccctaga tttaatgagc gaagacttcg atgaggcaga cgaagaggac
     2461 agcgaagaac agggaaaggg cgagatttta gcctaattcc acagtttgtt gatgacgcta
     2521 ttgctgatat tgctaccgtg tttcattgga cacccaatgc ctttgatgaa atgacgattg
     2581 tcgaactcgg gcaatggcga gaaaaagccc gcttacgaag tggggtagaa agttaaaaca
     2641 agcggtcgtg tttcgcaaaa aatttgcaaa attcgaccgc ttttagaaag gtgtttatga
     2701 tgatcttatt tttaatttgg ctcgctgatt ttattgggaa agttcacgtt atcattaacg
     2761 tatttttctt gcttgcgatt attttatgta ttgttggagg tataaccttt tgtgctaact
     2821 ccagtgagta cgataaggca gaaataaaat ggcataattg ggggaaaaca aaagtttatc
     2881 ttgccattaa agtagcgatt gcatctgcga ttattggagc gattatccct tcaaaaaata
     2941 cctattatgc aatggtggga gtatatgtcg ggcaagagat catcgctaat ccgacctcgc
     3001 aaagattatt tgataaatct attcaagcca ttgagttaaa acttgatgaa gtgattaatt
     3061 cagacttaaa aaaagataag taatgctcca acaattcgca atgatgtcgc taggctattt
     3121 tgtgtttatg cgatcgacaa tcccttatca agacaccagt cgagagatga actggtcgca
     3181 cgttcaaaat gatgtggttg gggcaatgcc taaaaatcaa tttaccggca aggcgggtga
     3241 aacctttgag atttcgggcg agctacgccc tgaaatcaca gggggcaagc tctccattct
     3301 tgcccttgag atgatggcag agcaaggtac ggcttatccg ttgattagcg ggtcggattt
     3361 tatgattcta ggttggtttg tcattgagcg tatcagcgtg cagtccacca ccttttttgc
     3421 agacggcaca ccgagagcga ttagcttctc aatgacacta aagcgagttg atgatagctt
     3481 actaactaac attgtcgatg aaataacagg gtttgttgat ggacttatta gctaaattaa
     3541 ccaaccacaa ccaccgcaca ccgactgttt cggtgacggt tcgcccaaag ccaagcaaag
     3601 gcaatgaggg cgaaaaagcc aaagatattt ccagcctgat tactcatcgc ttaattcaac
     3661 ttaccttaac cgataaccga ggctttgagg cagaccagtt ggatttagag ctggacgaca
     3721 ccgatggttt acttgctttg ccaagtcgag gagcgatttt atcggtcggg ttaggctggc
     3781 aagatagccc cttgacttat aaaggcgaat acacggtgga cgagctaact cacgacggcc
     3841 cgccggataa agtcacgatt cgggcgagaa gtgctgactt gcgaggcacg ctgaccaatc
     3901 gccacgagcg gagctttcac cgcacgacta ttggtaaaat tgtgaaacag atcgccgaag
     3961 agaacaaact caagccgata gtgggcaagg agtttgaaaa cgaggaggtg aaacacattg
     4021 accaaaccaa cgaaagctcg attaatctct tgcaacgcct cgcagaacaa ttcgatgcca
     4081 ttgctaccgt gaaaaacggc aatttgattt tcattaaagc cggaaacgcc acaaccgcaa
     4141 gcggtaaacc gttacccctg tttcgtatta cccgcagttc gggggattcc catagctttt
     4201 cgattgccga gggggataac tacaaagcgg ttaaagccta ttggcacaac acgcaaaccg
     4261 gcaagcgagg cgaggtgacg tgggacgaaa acagccaagt taaaaaagtg actaagccca
     4321 caatgcggaa aaagaccaaa gtaaaacgtg gagcagacgg caagccaata aaaggcaaag
     4381 acggcaaaag cattaaagag accgtctttg taaaaggcaa aggcagacaa gttaatgcgg
     4441 tggtgcaaag caaaccgatt gaaagcgaca gtgaggcaat taaaacccta cctcatacct
     4501 atattagcca gcaatcagcg attaatgcgt gtaaaaacca ttttgcaaaa ctggagagag
     4561 gggtggcaac ttttagccta actcttgcag agggtaatgc cgatcttatc cccgaattac
     4621 cggttcaggt ttcgggcttt aaggcggaga ttgatagcaa cgagtggata atttcacagg
     4681 ttacgcacag cttaaataaa ggtggtgggt ttacgacagc gttggagatg gagttgaagc
     4741 cgaagtctga agactaacgc tatttttata aaattactat aaaaagcctt gcatctctga
     4801 tcttgaacaa gtaatattaa tcaaagttac atatttattt acataaaaca caaagaatca
     4861 taggggcggc tactttgtgt gattccgccc agtggggaaa ttgggcgttg ttttacacat
     4921 ataagtcctt gaggacactc accgtgcagg ctggaaggtc tgctctttct tttttaatag
     4981 tgggtattta agttttgttt ctctcgttct tactattcta ggtccttttg tagggtcgta
     5041 aaaataccaa atattaaatt tcttttcctc ctgtaaagta tcataagtta atttatccca
     5101 acctaggtgc aaagcaatcc attttgttag ttctttttta cgttccgatg taatatcatt
     5161 ttgatagcta cttaatattg ctcctaataa taaatcgcat agttgaacgc cagatgattt
     5221 acgagaatct acttcgttta atgctagaat agcatttgct acggcagtct ttttacgaat
     5281 tatattatta gcgataacgt gcattgcctc atcagcttta ttgtatttaa aaggta
//
LOCUS       DANLUT010000153         5315 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLUT010000153 DANLUT010000000
VERSION     DANLUT010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            25..1143
                     /gene="rnd"
                     /locus_tag="PXB38_002130"
     CDS             25..1143
                     /gene="rnd"
                     /locus_tag="PXB38_002130"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL5354402.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            1200..1682
                     /gene="lrp"
                     /locus_tag="PXB38_002131"
     CDS             1200..1682
                     /gene="lrp"
                     /locus_tag="PXB38_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL5354403.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMASYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            1693..4353
                     /locus_tag="PXB38_002132"
     CDS             1693..4353
                     /locus_tag="PXB38_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL5354404.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNIGGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     TQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     RKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            4505..>5315
                     /locus_tag="PXB38_002133"
     CDS             4505..>5315
                     /locus_tag="PXB38_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL5354405.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTG"
BASE COUNT         1674 a          960 c         1207 g         1474 t
ORIGIN      
        1 gtttaaatat ttcaggaaaa gtatatggag tctttgattc actaccaatg ggttgaaaca
       61 aatgagcaat tagaggccgt atgtgaacag gccagaaaaa caaaagtagt tgccttagat
      121 acagagttta tccgtacacg tacctattat ccgatattgg gtttaattca actctttgat
      181 ggccaacagg ttagccttat tgatccaaat acgatttctg acttctcgcc ttttgtgtca
      241 ttattagccg ataaaaatat cataaaagta ttacatgcct gtagtgagga tttagaagtt
      301 tttgagtatc aatttaagca attgccagag ccgatgttgg atactcaggt gatggcagcc
      361 tttgccggca ttggtatttc gatggggttt gcaaaattgg tttcccacta cttaaatatt
      421 gaactagaca aaggcgcttc ccgaaccgat tggcttgcca gaccgctaag cgctgaacaa
      481 ttacaatatg cggcagctga tgtttggtat ttattgccag tttatgagaa attggcacaa
      541 gcattaacaa aaagcacttg gcaaagtgct gtagcagagg agtgtgtcgc tttgttgaag
      601 aaagcgaaac agcctatcaa taaggaaaaa gcctataaaa atattgccaa tgcttggcga
      661 ttgaatcggg aagagttagc catattacaa gtattagcga aatggcggat tgaagaagca
      721 caaaagcgca atcttgcctt aaattttgtc gtgaaggagg caagtttagt tcaaatcgca
      781 aaaagctgtc ctaaacacac ttcttcgctg ttagaattta tgcacccaaa tgaagtcaga
      841 attcacggaa aaaaaatact atggttggtt gagcaaggaa aagcaataga atcgaatgat
      901 tatcctgaac tcattcagcg cttggtggat gaaaagggtt ataaatatta tatgcaagcg
      961 atgttgcaaa aattattaga aattcaaccg cttgatatcg taccggaatt ggttgcaagt
     1021 aaacgtcaat taaatcagct atttaaatgg tatattgatg gaaaaccatc agaaaaaatt
     1081 cctgaattat taatcggttg gcgaaaacct tttggtgaac agctgctatc ggttttatct
     1141 taaatttcat tcgggttaca tagactatgt acagtataat tgcctaaaaa ggagtttata
     1201 tggaaaataa aaaaccacca aaagcattag atgcgattga tttaaaaatc ttaaacgagc
     1261 tacaacgtaa cgggaaaatt tctaatattg aattatcaaa gcgagttggg ctttctccaa
     1321 cgccctgctt agaacgggta aaacggctag aaaaaaataa cgtaattatg ggctataaag
     1381 ctttacttaa ccctgaatta cttgatgccc ctttactggt gattgttgaa attactttgg
     1441 tgcgtggtaa gcctgatgta tttgaagaat ttaataaagc gattcaacaa cttgatgaaa
     1501 ttcaagaatg ccacctggta tcgggggatt ttgattatct gttaaaaacc cgtgtggcgg
     1561 atatggcatc gtaccgtaag ttattaggca caacattgct tcgtttgccc ggcgtaaatg
     1621 acactcgaac ctatgtggtg atggaagaag taaaacaaac caactatttg ttgttaaagt
     1681 aaggagaatt gggtgattga acaacttaaa ccacacctaa aaggcaaaga gaacttgatc
     1741 aaacttatgc ttttgttgac cggctttttg ggcgtttatt tgctaattgc ttgggcaagt
     1801 tatagtccat tagataatgc ttggtctgtt gcaagcagca ttacacaaac aaccttgaat
     1861 aaaacaggtc actttggtgc ttggagtatt gatatgctct atgcaatgtt tggtaaggtt
     1921 gcagttttag tacctattgc attaattatt ttctcaattt atagcttggg aatgggttta
     1981 agtgtcgata tgaaatggaa aactgtcttc attcgcctag ccagtttctt attattgatg
     2041 gtcggtcttg ccgggttatt tagcgtgctt ttttcaaact cagcttatta tctgtcgggt
     2101 ggctttgtcg gtggagtttg ggagacaata ttatctgata ctatcggaca atttggtgcc
     2161 ttattgattg caatgctttt tactatagct ggcttatatt tttgctctgt tcaatcatta
     2221 ttgccaatat taacgcaatt ttatgagtgg ataatggcaa aatcagaaga gagcaaaaca
     2281 gctgaatctc ttcagcattt gcaaaatact gagcaaaaac aaccgcttgt aactgaaaat
     2341 gaagcggtgg aagttgtaga tgaccataaa ccgcaattta ccgatatctc cgcctttaaa
     2401 cgcccaaaca ttggtggttt aagacactcg gaaaatgtag agatagataa ccgagaaatg
     2461 tatgaaattg aaagagatct tgagctaccg actattaata ttttaataca gcctgatatg
     2521 gttaaccaag ttgcggaaca agctacatcg ggctatgagt taccaaacga agaatccaat
     2581 gtattgcaaa tgccgaccat tcgcttaaat accgctatcg aaaacgaggt ggatacaatc
     2641 gaaaacagtt catcattgga agacctgaaa atagcagaat ctatgttacc tcaaactcag
     2701 cttgataatg atattgaaga tactgaagaa gctattgacg atgtgcgtga aattacaccg
     2761 gaatttatgg taacgccgcc caaggcgatg aaagatgtgt ctgagcagcc agcctatcca
     2821 aaaggctatg gtgatacgtt aattcacccg ttgttacaac gaaaagtgat aaccgaaaaa
     2881 ccgacaacac cattgccaac gctagatttg ttggataaag caccgattca aagccagcaa
     2941 attaccgaac aggaaatacg agaaacctct gtgcggctag aagcagaatt agcaaacttt
     3001 ggcgtaaaag ctaccgttga agatgtattg gtcggtccgg tagtgacccg ttatgaaatc
     3061 caaccggctg ccggggtaaa agcctccaaa attaccaatt tagcgagcga tatagctcgt
     3121 ggcttaatgt ttaaagcgat taggattact gaagttatcc caaacaaacc ttatatgggt
     3181 attgaaactc cgaataaaca ccgtgaaaca gtgtggttgc gtgatgtgct agacagcgat
     3241 gaattccgca ataccactgc aacattgcca atggcactag gtaaagacat cagtggtgag
     3301 cctgtggtgg tcgatatggc gaaaatgcca cacttactgg tggcagggca gaccggtggg
     3361 ggtaaatcgg ttggggtgaa tacgatgatt ttaagtctat tgttcaaact tacaccagaa
     3421 caagtccgct ttattatgat tgaccctaaa gtggtggagc tttccattta taacgatatt
     3481 cctcacttat taacgccggt agtaaccgat atgaaaaaag ctgccaacgc actacgctgg
     3541 gcggtggagg aaatggaacg ccgttatttg ctggtaagcc atttacaggt gcgtaatatt
     3601 gaaggctata atgcgaaaat cgaccaagcg gcagcgatga atttgccgat tccagatcca
     3661 acgtggcgac cgggcgattc aatggatagc cttccgcctc cgctacaaaa attaagctat
     3721 attgtgctga ttgtcgatga gtttgcggat ttaatgatgt ctgccggtaa agaagtggaa
     3781 gagtacatta tgcgaattgc tcaaaaagcc cgagcggtgg gaattcactt aattcttgct
     3841 acccaacgtc cgtcaaccga tgtgattacc ggcgtgatta aagccaatat tccaagccgg
     3901 attgcgttta cagtagcgag ccaaattgac tcaagaacta ttttagattc aggtggagca
     3961 gaggcattat tagggcgagg cgatatgctc tattcaggag ctggcagccc ggatattatt
     4021 cggatacacg gtgcgtttat gaaagacgaa gaagtgcaac gcgtggcgga taattggcgg
     4081 gcaagaagaa aaccaaacta cttggaaagc attgtggaat cccgctcgga agaggctgat
     4141 ggcaaaaacg atggcggaac gggcgattta gatccgctat ttgatgaggt tgttgaatat
     4201 atcacggaaa ccggttcggt ctctatcagt aatattcaac gccgcttctc gcttggtttt
     4261 aaccgtgcgg ctagaattgt ggatcaaatg gaagctcaag gcattgtttc tgagccactt
     4321 aaaggtggca aacgagaagt gctggcgagg taaaacacat acaagcggtt agatttctgt
     4381 gaaattttgc aaattttgac aaaaatctaa ccgcttgtat ttatctaatg ctaaataagc
     4441 atagtataag gctagtcttt gggctaaaat taacgcaatt tttacatctt ttaaggttga
     4501 atatatgcga ttagatgata ttaaagaaag taaaaatgtt gaagacagaa gattcaacaa
     4561 tgtgggtaga actaaggttg gtagagggaa aggtggaata ttaaccttta ttatcgtgct
     4621 tgttggagct tattatggtg ttgacttaac aggtttaatg ggcggtggcg tagaatatga
     4681 ggagcagaca tcagcattaa atgaaagtga agaaaaacag ctaagaacct tatccgctaa
     4741 agtattaacg accacagaaa atatttggac ttcctacttc cagcaaaatg gtctaactta
     4801 taaagagccg tctttggtgc tttaccgtgg ggcaattcaa actgcctgtg gcaccggtca
     4861 atctgcaatg ggtcctttct attgccctgt cgatcaaaag gtttatttag atttatcatt
     4921 ctatgatgat atgcgtaaaa aattaagagc atcgggcgat tttgccttct cttacgtgat
     4981 tgcacacgag gttggccacc acgtccaaaa tttattgggc ataacaagca aaacccaacg
     5041 ggctcaaatg aaagcctcat ctaaagccga agcaaaccaa atttcagtca atgtagaatt
     5101 gcaagctgac tgttttgccg gcgtttgggg acaccaactc gcaaaagcca accgattaga
     5161 ggaaggcgat gtggaagaag cctttaatgc tgcccaagca gttggagatg accgattaca
     5221 gcaacaaagt cgtggctatg tcgtgccgga tagcttcacc cacggctcat ctgcacagcg
     5281 tttggcttgg tttagaaaag gtttaaccac aggaa
//
LOCUS       DANLUT010000154         5310 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.155, whole genome shotgun sequence.
ACCESSION   DANLUT010000154 DANLUT010000000
VERSION     DANLUT010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            108..1283
                     /locus_tag="PXB38_002134"
     CDS             108..1283
                     /locus_tag="PXB38_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL5354406.1"
                     /translation="MKKTSLFSLFTFSLLSACSSLPTSGPSYSEVLASNENNAETQLP
                     EVNLIKLDNITVQNLYQAQQSQRFSGFDGSIGVGGYAGTVNVGDILEISIWEAPPAVL
                     FGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEAIQNQIVGALSRK
                     ANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVR
                     LTRGNKVRSMAFETLIADPSQNITLRSGDVVALMNTPYSFTGLGAVGNNQQMRFSSKG
                     ITLAEAIGKMGGLIDDRSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPTVYQ
                     VNLLKPQSMFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY"
     gene            1355..2458
                     /locus_tag="PXB38_002135"
     CDS             1355..2458
                     /locus_tag="PXB38_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5354407.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGFGFNDTQEAFYRYFKEHLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSGV
                     QLSLISTLKSELIRVETQLAQLQSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLSAAMTSLQNTRGEADRQQLYLEVIGKPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLIASIREHKN"
     gene            2458..3255
                     /locus_tag="PXB38_002136"
     CDS             2458..3255
                     /locus_tag="PXB38_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5354408.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRRNIGFLWLFI
                     EPLLLTLIISLAWKYIKADKYSTLNIVAFMLTGYPIAMMWRNTTNRSKGAISANISLL
                     YHRNVRVLDTIFTRALLEVAGTSIAQILLMAFFIAIGWIDVPHDIFYMLCAWVLMAFF
                     ALGLGLIICALAHYIEPFGRIWGTFSFVLLPLSGAFFFVHNLPSQAQQIALWFPMIHG
                     TEMFRHGYFGETVITYESISYIIVSDLILLFIGLLFVRSFSKGIEPR"
     gene            3252..3899
                     /locus_tag="PXB38_002137"
     CDS             3252..3899
                     /locus_tag="PXB38_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354409.1"
                     /translation="MISIRNVSKRYRTNSGWRTVLKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(3977..4606)
                     /locus_tag="PXB38_002138"
     CDS             complement(3977..4606)
                     /locus_tag="PXB38_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL5354410.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISTLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(4678..5151)
                     /locus_tag="PXB38_002139"
     CDS             complement(4678..5151)
                     /locus_tag="PXB38_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL5354411.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT         1658 a          983 c         1009 g         1660 t
ORIGIN      
        1 aaatacaaaa atacaaccta ttgtttctat taaatagtat tgataagtta agctacgcct
       61 agcttaacat tagtgctata ctactatcaa atgtaatgag gtatctaatg aaaaaaacat
      121 ctttgtttag tctattcact tttagcttac tatcagcctg ctccagccta ccaacgtccg
      181 gcccgagcta tagcgaagtc ttagcaagta atgaaaataa cgctgaaaca caattacctg
      241 aagtcaattt aatcaagtta gataacatca ccgtacaaaa cttataccaa gcgcaacaat
      301 ctcaacgttt ttcaggcttt gatggctcaa tcggtgtggg tggttatgcc ggaacagtta
      361 atgtaggcga tatattggaa atatccattt gggaagcgcc acctgccgtg ctatttggtg
      421 gaacatttag tgcagaaggg caaggtaatg ggcatttaac tcaattacca cagcaaatgg
      481 tgaacaaaaa tggtacggta actgtgcctt ttatcggtaa cattaaagtg gcagggaaaa
      541 cgcctgaagc tattcaaaat caaattgttg gtgcattaag ccgtaaggcc aatcagcctc
      601 aagcattagt tcgtattgcg aataacttgt cgtctgatgt tactgttatc cgccaaggaa
      661 atagcattcg tatgccatta agcgcaaata acgagcgcat tttagatgcc gttgcggcag
      721 taggtggtac aagcgaaaat attgaagatg taacggttcg tttaacacgt ggaaataaag
      781 tacgttcgat ggcgtttgaa accttaattg ccgatccctc acaaaatatt acattacgtt
      841 caggcgatgt tgttgcctta atgaatacgc cttatagctt taccggcttg ggggctgtgg
      901 gaaataatca gcaaatgcgt ttctcaagta aagggattac acttgctgaa gctataggta
      961 agatgggggg attaattgat gatcgttcag accctcgtgg tgtgttcgta ttccgccata
     1021 ttccttttac acaattagat tacgataacc aagctcaatg gcgtgaaaaa ggttatgcag
     1081 agggaatgga cgttccaact gtttatcagg tgaatttatt aaaaccgcaa tcaatgtttt
     1141 tattgcagcg tttccctatt caagataaag atattgtata tgtgtcgaat gctccactgt
     1201 ctgaatttca aaaattcttg agaatgattt tctccattac tacaccaatt acaggtacag
     1261 ctaatacaat tagagcgtac taattagctc atagataaaa tggtaaaaaa tcattaaaaa
     1321 atgaccgctt gtaacacttt tcgttgagga ttttatgtca aagaagaaaa aacatttttt
     1381 agccaaccct ttgttgtggc taactgtaat tattccaact gcttgttccg gaatttatta
     1441 ttccttattt gcctctgata tttatgtttc agaatctagc tttgtggttc gttcaccgaa
     1501 taatcaatcc agcttaaccg gcgtgggtgc tttattgcaa aactccggtt tcgcccgttc
     1561 tcaagatgat acctattcag ttcaggaata tatgcgttcc cgtaccgcat tagagcaact
     1621 tgaagcagaa attccggtaa aacgttttta tagtgagcaa ggtgatttac taagcaaatt
     1681 taacggtttc ggatttaacg atacccaaga agcgttttac cgttacttta aagaacatct
     1741 gaatattgat gtcgattcta tttcaggtat tgcgacgtta cgcgttcgtg cttttaatgc
     1801 cgaagaaggg cagaaaatta acgagaattt attacagcaa ggagaaacat taattaaccg
     1861 tcttaatgaa agagcaagac aagatacggt tgagtttgca gaagaacgcg taaaagaggc
     1921 cgaaaaagat gtcaataata ctgcgttagc attaagccaa tatcgaacca aaaataaaat
     1981 ttatgattta cctgcacaat ccggcgttca gctctcatta atttctacct taaaaagtga
     2041 attaattcgg gttgaaacac aattagcaca attgcagtca attacgccgg ataatcctca
     2101 ggtagccgca ttacaaatgc gtcaaaaaag tttgaaaaaa gaaattgatg accaatctaa
     2161 acaacttgca ggaggtaata cttctgtggc aacgcaaaca gctgaatatc agcgtttagt
     2221 tttagctaac gagctagctc aacaacagct ttcagcggca atgacatcgc tacaaaatac
     2281 aagaggagag gctgatcgcc agcaacttta tttagaggta attggtaaac caagcaaacc
     2341 ggattgggca ttagaaccct acagaattta taatattata tcaacttttt ttatcggctt
     2401 aattctattt ggagtattaa gtttgttaat agcaagtatc agagagcata aaaactaatg
     2461 cgatatggtg ataatacaac ctttaaacgt tcctgcgtga ttcaaaaacg agtgattcac
     2521 gctcttttaa tgcgagagtt gatcacccgt tatgggcgta gaaatattgg ctttttatgg
     2581 ctgtttattg aacccttatt attaactcta atcatttcat tagcttggaa gtacattaaa
     2641 gctgataaat attctacgct taatattgtt gcatttatgc ttaccggcta tccgattgca
     2701 atgatgtgga gaaatacaac aaatagatct aagggagcta tatccgcaaa tattagcctg
     2761 ctttatcatc gaaacgttcg tgtattagat accatattca ctcgagcttt attggaagtt
     2821 gcagggacat ctattgctca aatcctatta atggcgtttt ttatcgctat tggctggata
     2881 gatgtacccc acgatatttt ctatatgctt tgtgcttggg tattaatggc attttttgca
     2941 ttaggtttag gcttaattat ctgtgcatta gcacattata ttgaaccatt tggcagaatt
     3001 tggggaacct ttagcttcgt attacttcca ttgtccggag cattcttttt cgtccataac
     3061 ttaccatcac aagcacagca aatcgcactg tggtttccaa tgattcacgg tacagaaatg
     3121 ttcagacatg gctattttgg cgaaactgtc attacctatg aaagcattag ttatattata
     3181 gtcagcgatc ttattctgtt attcatcggc ttactctttg tgagaagttt tagtaaagga
     3241 atcgaaccta gatgattagt attagaaatg tcagtaagcg ttatagaaca aatagcggtt
     3301 ggcgtaccgt tcttaaagat attaactttg agctaaaaaa aggtgaaaaa gtgggtattt
     3361 tagggcgcaa tggtgcagga aaatcaacct taatccgttt aatgagcgga gtagaacctc
     3421 caacaacagg tacgattgaa cgtcaaatgt cgatttcttg gccactggca tttagtggtg
     3481 cattccaggg tagtttgacc ggaatggata atcttcgttt cgtcagccga atttatgatg
     3541 ctgattttga ctatgtaaaa tctttcaccg aagaattttc agaactcggc gaatatttat
     3601 atgaaccggt aaaaagctat tcttctggta tgaaggcccg tttagccttt gcattatcgc
     3661 tttctattga atttgattgt tacttaattg atgaagtgat tgcagtaggc gatgctcgat
     3721 tcgctgccaa atgtaagcac gagctttttg aaaaacggaa agaccgttca ttgattttag
     3781 tttctcatag cccagcctca attaaagaat attgcgattc tgcaatggtt ttagaagagg
     3841 gtatcatgca tacttttgat tctatagata acgcttataa tttctacaat aaaacataaa
     3901 agaacaagcg gttatatttc acaagttttt cgcaaaaaac tctcaaaata taaccgcttg
     3961 ttactaaaac tgaaaattag aaacctgcgt ctttttctaa ttgttcaact aatgcctcag
     4021 ctaaacctaa agcatcagct aaattagcta agaaaacgat ttctttgcgt tctaaatctc
     4081 tgcatactgc acgggaagct aagtaaactt gtgtagccaa tgcttggtca ttacctactt
     4141 ggcgggcaat ctcttcaact gtagccggag tgtccatttc ttgacgaatc cactcaatga
     4201 cttcagcctc atctccaact tgggaaacaa tagctgcttt ttcctcttca gtaatagcac
     4261 catctgaagc agcagcggca atcattgctt gtaaaatcac tttacttgcc acattttcat
     4321 ctacattttc aaaattattt tggctaagtt ctgaaaccga tgaattttgc gcttgatact
     4381 tttggtatgc ttgataagca aggctaccga tagcggctaa agagcctaat tttgctaaac
     4441 ttgaaccgcc attacgccca aataacgttg aaattaaacc aatagcgaca gcgccgccac
     4501 caattttagc gatctgatcg tttttagaat tacctttaat taatccgttt gtagcggcat
     4561 cttttgctgt atctaatact tgacttaaaa tcttactgaa atccattttt gttcctcttg
     4621 gtaagtaaat gaaatttact cattagtcct tagattcaaa caagagttca attcaaatta
     4681 aagataattt ccacaacagt gcttaaactt ctttccggag ccacatacac aaggttgttt
     4741 ttgatgaggc aaaggtacgg taggatccac aaaaaaccat cgctcatcaa tttgaacaaa
     4801 aagagaggtt tcgtggtgtc cctgtatccc ctcatctgta tcaaaaaagg ctttaaattc
     4861 aacctgacta tgtattctcg aaagagaagg taagtgattt agcacggata atcctaccca
     4921 ttttgtattt tcagcccact ctttcattgc agtctgatca agtaatttct gctgacttgg
     4981 cactgtcgtt tccacaatat agggaatatt aaccaaagta taagcactgt aacgggagcg
     5041 cattaattgc tctgccgttg atgcaaatgt ctgttttaaa tggaaaggtt ggcaacattc
     5101 agcgtagcgt ttgcctgttt ggcaaggaca agcggtgatt ttttctaaca tttttacatt
     5161 tccgcataaa aataaagatg tgaaaagttt acgctataaa taaagaaaaa taaattttat
     5221 aaaaaagcgt gacatacccc ttgtggataa cttatgcaaa aatcgtgaat tttttgggta
     5281 ttcattgctt taaaaagcct ttattctata
//
LOCUS       DANLUT010000155         5310 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLUT010000155 DANLUT010000000
VERSION     DANLUT010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5310
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXB38_002140"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXB38_002140"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL5354412.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINGKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXB38_002141"
     CDS             complement(1903..2151)
                     /locus_tag="PXB38_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL5354413.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2276..2320
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2324..2992
                     /gene="queC"
                     /locus_tag="PXB38_002142"
     CDS             2324..2992
                     /gene="queC"
                     /locus_tag="PXB38_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL5354414.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2985..3407
                     /gene="queD"
                     /locus_tag="PXB38_002143"
     CDS             2985..3407
                     /gene="queD"
                     /locus_tag="PXB38_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL5354415.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3407..4033
                     /locus_tag="PXB38_002144"
     CDS             3407..4033
                     /locus_tag="PXB38_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL5354416.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
     gene            complement(4129..5196)
                     /locus_tag="PXB38_002145"
     CDS             complement(4129..5196)
                     /locus_tag="PXB38_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354417.1"
                     /translation="MKFNKKLILTFAATLVLSACGGSSSGGSPSTPNQPKPVLVPKTQ
                     NTPLAQNTPQVQNAPQVQNVPQVQNVPQMENNTQSQNNSQIQDQPEVAPPATQIAPSI
                     PEKKIDGSFDKIGTVILDAEKQTITLNKFILVDKPDSPKKYDRVSGKPIIQEKNQIIL
                     PLADISTGALTSDQNADYLIGRSGDLFYGVYHDTQSNILVEEADKFSKYFVIYDENRV
                     NSKVSQDLTATYDKKGGVVYGANAGIKEFEARLNKLGDVNIEFKNGKANGNISDENSV
                     KPIFTITGDTKSLVISPTADNPVISVILNERKQSYSQGMEKAVMDIKFIDSAKGAGDQ
                     KYLIGEAKSESWQAIMVSEKQ"
BASE COUNT         1567 a          960 c         1078 g         1705 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggtgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccctacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggtttttccg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc tcaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaaa gaccgcttgt attttttatt
     2281 tgtggttcgt aaacctccca cacaaaaaaa ctaaggacac aaaatgactc atcaaaaacc
     2341 aaaagccgtt gtgatttttt ccggcggtca agactctacc acttgtttat tccaagctat
     2401 tgctgaattt ggcaaagaaa atgtggaagt cgttaccttt caatatgggc aacgccattc
     2461 gattgaactt gaaaaagcac gctggatttc taacgattta ggcgtcaaac aaacgctgat
     2521 tgatacttcg gtgattaaag cgattactac caatgcgtta atggataata atgctgaaat
     2581 tcaacaacaa ggcagtacac ccaatacctt tgtggatggg cgtaatgcct tatttctgct
     2641 ttataccgcc atttatgcca aagggcaggg cattcaaact atttttaccg gcgtgtgtga
     2701 gaccgatttt agtggttacc ctgattgccg agatgtattt gtaaaatcaa tgaatgtaac
     2761 gctaaattta gcgatggact ataatttcaa cattcgcacg ccattgatgt atttaactaa
     2821 aaaagaaact tgggcattag cagataagct gggtgctttt gattatattc gagaccatac
     2881 ccacacctgt tatttaggcg ttgaaggtgg ttgccacgac tgcccgagtt gcgtattgcg
     2941 agaaaaaggc ttgaatgaat atttagcaga aagggaggta agcaatgttt aaaattgcta
     3001 aagaatttag ttttgatatg gctcatatgc tagatggaca cgatggcaaa tgccaaaact
     3061 tacacggaca cacctacaaa ttgcaagttg aggtggcagg tgagctattt caagagggag
     3121 ctaaaagagg aatggtaatg gactattcgg atctaaaagc agtggtaaaa caacatattt
     3181 tagagccgat ggatcacgct tttatttacg acttacagag tgagcgtgaa agccaagtag
     3241 cacaattatt aattgattta aactccaagg tttatggtat tccaactcgt accacagccg
     3301 aagaaatggc gaaatatatg tttgaaaaat tagagaaagt gggcttaccg gttagcctaa
     3361 ttcgcttgtg ggaaacgcct acttcttatt gtgagtacag caaataatgg cggagttaat
     3421 ttcaaaccct cgttttccga ttgttgagat ctttgaaagc ttacaagggg aaggctttaa
     3481 taccggaatg ccggctattt ttgtacgttt tggcaaatgc aacctcactt gcccgtggtg
     3541 cgataccaat tacaatcaat ttgagcaatg gacgttaagc gatattcttg ccaaagtaag
     3601 aagctattct gcgaaaaatg tgattattac cggaggcgag ccaacgattc agcctaattt
     3661 atcgttatta ttagaacaat ttaaaaaaga gggatatttt ttagcgatcg aaaccaacgg
     3721 cttaaaagag gttccggcac aaattgatta tattgcgacc agcccaaagc gaatgtacca
     3781 agaaaagtat caacgccgtt gcattgaatt tgcgaatgaa gtccgtatcg tcgttgatgg
     3841 agaagtacag ggtttctgtg agcaaataga aagccaaatt aaagctgagc attactatct
     3901 ttcaccttgt gaggtagagg gaaaaatgaa cttgctggaa accatcaccc agattgggtt
     3961 attaaatcag cgtccaaata agcctaaatg gcagctaagt atccaaacgc ataaaatcgt
     4021 ggggattgaa taagtagaag ttagaagatg attttctaca atttaaaaga ctgagccgat
     4081 attatcggac tcagtctttt ttacttcagt ttttagcaga agataacttt attgtttctc
     4141 gctaaccatt atagcttgcc agctctcgct ttttgcttca ccgattaagt atttttggtc
     4201 gccagctcct tttgcagaat caataaattt aatatccatt acagcttttt ccataccttg
     4261 actgtaactc tgtttacgtt catttaatat tacagatata acagggttat ctgctgttgg
     4321 agaaattact aaactttttg tatcaccagt gattgtaaag atcggtttta cggaattttc
     4381 atcacttata ttaccgtttg ccttaccatt tttgaattca atgttaacat ctcccagttt
     4441 atttaaacgt gcttcaaact cttttatacc tgcatttgca ccatatacaa cccctccttt
     4501 tttgtcataa gtggctgtta agtcttgaga tactttactg ttaacacgat tttcatcata
     4561 aataacaaaa tatttgctga atttatccgc ttcttctaca agaatattac tttgtgtatc
     4621 gtgataaacg ccatagaaca gatctccgct acgtcctatt agataatcag cgttttgatc
     4681 agatgttaat gctccggtag aaatatctgc caacggtagt atgatctggt tcttttcttg
     4741 aataattggt ttgccactaa cacgatcata ttttttgggg ctatcaggtt tatcaactag
     4801 aataaattta ttgagtgtaa tagtttgttt ttctgcatca agtattactg tcccaatttt
     4861 atcaaaagat ccatctattt tcttttcagg tattgacgga gcaatttgtg ttgctggagg
     4921 agcaacttct ggctgatcct gtatttggga attattttga ctttgggtgt tattttccat
     4981 ctgaggaaca ttttgtacct gaggaacatt ttgtacctga ggagcatttt gtacctgagg
     5041 agtattttgt gccagaggag tattttgtgt ttttggtact agtactggtt tgggttggtt
     5101 cggtgttgaa ggcgaacctc cgctactact tcctccgcaa gcacttaaaa ctaaggttgc
     5161 ggcaaatgtt aaaattaatt ttttattgaa tttcattggg ttattcctta aatataaaaa
     5221 cgagactatg agaagtctat catatttttt tatatgaaat aagaatgaat ggtctgagga
     5281 gttttacgta aacgtttccc ttatgaaaaa
//
LOCUS       DANLUT010000156         5270 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLUT010000156 DANLUT010000000
VERSION     DANLUT010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5270
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1037)
                     /locus_tag="PXB38_002146"
     CDS             complement(<1..1037)
                     /locus_tag="PXB38_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HDL5354418.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGK"
     gene            complement(1047..2231)
                     /gene="neuC"
                     /locus_tag="PXB38_002147"
     CDS             complement(1047..2231)
                     /gene="neuC"
                     /locus_tag="PXB38_002147"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL5354419.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIGQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRGESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2232..3491)
                     /locus_tag="PXB38_002148"
     CDS             complement(2232..3491)
                     /locus_tag="PXB38_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5354420.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLLSHYPIEFIKRAEHLASDKASTFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDESLKHFQLDY
                     SNYARQLHNPEYSPNGAIFTAKPEAYLKQRHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITLTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(3551..4588)
                     /gene="neuB"
                     /locus_tag="PXB38_002149"
     CDS             complement(3551..4588)
                     /gene="neuB"
                     /locus_tag="PXB38_002149"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL5354421.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(4588..5232)
                     /locus_tag="PXB38_002150"
     CDS             complement(4588..5232)
                     /locus_tag="PXB38_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL5354422.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGFIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1647 a         1113 c          869 g         1641 t
ORIGIN      
        1 tttttgccat aaaaaaacaa ataattgact aaaatgaggt aaggcacaac caacattgtc
       61 gcaattaaaa agagaataat gtagtatttt gttcctacaa attggctacc cagaatccat
      121 accactaatt cttccggaat aaaccacatc acaatagcag gtaatggtac aataaataag
      181 gcatacaacg cccatttgtg gatatggctg acattaattt ttttctgctt taaggcttca
      241 taaaaataag gcagtgttgc tttatttaag gcttgaacca caatggctag aatcatcgca
      301 atttgagccc ccattgcata taaacctaaa tcctcttcgc taaatttatg gtaaataaat
      361 actctgtcta actgtccttt taagaaaata ctggaatggt gcaaaatcaa cggaatacca
      421 aagccgaata aatacaataa agcagtttta tggcgggcaa ggctaaattt cttcgttttt
      481 gctcttttag catacaaaaa gtaagcgatt agaaagacta agccattact catcaaaatc
      541 gctaaaatcc gcttttccac taaatcggtc ttaaaatact ccatcattgc aacggtaata
      601 actgccgaaa aaatcgccga cattaattga atcgttgtat aagcaagtgc ctgtttttga
      661 cactgcctta cactaagctg tacattcaaa aacgactgga acatcgcccc aatcgctaca
      721 taagcaataa tttcagactg gaaataccag caacccaaca ggataagcaa agttgcacaa
      781 agagtatata aataccctgt actcaagact aaatttagtg aacgcttacc ataaaaatag
      841 aaatagcgag caaccgcacc gtcttggcta agcccgataa aaattacaaa taaagcggca
      901 aaggtttggt agtaggaaag ctccccataa cctgccacgc cgagtttgcg tgaaaagtag
      961 ggtaagagca agaaaggaat tgactttgac gccaattccc caattaaata aatcacactg
     1021 tctttaactg ctttcatagt tgcaaattat tctgattttt tgaccgcttg cgagaaagca
     1081 acatcataaa atcctttcgg ttgagtatgg tggctgtctg ctaagaatat tttgattgca
     1141 ttgtaagcct tttccatcgc gttgtcttga aaatatggat ttttcatact cggtaaacgg
     1201 tgttggaaat cggctgaaat caatttttcg ataccatcta tgatagcctg ttcattactc
     1261 tctacatcaa ttacgctctc accccgtact cgcccttgct ggcgattacc gatatttagc
     1321 gtaccaacac cacaactcgg tgcttcaatc aagcctgatg agctattacc aatcaaccca
     1381 ttcgaatatt taatcaacgc taaatactct tccggtttga ctgaggtgaa aaacttaaat
     1441 tgattttcat cggtgtaagc cttaaaacgt gcataaattt gctctgaatt ggtgtctgaa
     1501 tttgagccga taaagacgaa ttggtatttg tctttaaact gctcaaaagc attgagtaac
     1561 gcctcaattt gctccaacac ggaaacatcg gttaaggttt ccgggtggaa gaccactaaa
     1621 aaataaggcg atgccggaat ccctaatctc tcgactaatt ctgcttgggt cggcaacact
     1681 aaatccaaac tattctccgc ccctagagaa ccagtattca ccacattttc gggcagctcg
     1741 cccatttgaa tcacacgctg tctatattct tcagttgaag ttaaatgcaa tttcgacatt
     1801 ttggtaatac aatggcgaat aaattcatcg taattaccta atgtttgctc accaccgtgc
     1861 agatgaatca gcggaatatt atgcatcgcc gcagccgttg ccaccgccaa catctcgtaa
     1921 cgatcgccta gcacaatcac cgcatcataa cgatgttgct ggaaatgttc gccaaatcga
     1981 tctaaacact ctgccattga atgaataatg gtctgattat tttcactgtt taaggtaagc
     2041 ggaatacgag ctgcaatctc aaagccatct tgcccaatga ccgtcaccgt attgccatat
     2101 tgcggatcca aatgcatcgc agtaacaacc agagagaaat tcacagtcgg atcttgtgct
     2161 aatttttgta ataaacgctt tacaatcccg tattcggcac gagatccggt aatataggca
     2221 atatttttca tttagttgag ctctttttcc aaaatagcgg ttaatttttc ataacctttt
     2281 gcatttaaat gtaatccgtc atcgctatag cttaaatcca atttgccata tttatcgcta
     2341 aatgcctgat ctaagctaat ccatttcacc gctaaattat ctttaagata ttgatttaac
     2401 aagcgaatat cgttgttatt acgatcgact ctaaatgcag ttagggtaat ttccaagaaa
     2461 tagagattaa tatctccacg aattgctgtt aattgtgcaa ttaaatgatt aatatctgct
     2521 agaatttttt catcactcca gccagcatat acaatatcat tagtaccgaa cattaaaata
     2581 atgtctttag gtaaagcaga aattaaacct tcatccaaaa tcagatcact gtattgtttt
     2641 gttgaaatac ctgcaattcc taaattatta actgccttac cgtttaaatg ttcaatatcc
     2701 caatattcaa tgatcgaatg cccgattaag gctatctctt tcacttcttt aaagttctct
     2761 tttttcatta aaatcgaacg tttaatggtt tcaagtaaga ttttttcttt attgcgttgt
     2821 tgcagaataa agtagaagta ctcgaaatct tggcgatcat caatatcaat agaaacgtct
     2881 ttatccataa aataggctag acatttcgca ccatagaagt gtctttgttt aagataggct
     2941 tctggcttag ctgtaaaaat agctccattc ggtgaatatt caggattatg caattggcgt
     3001 gcatagttag aataatccaa ctgaaaatgc tttaggctct cgtcttcctc aatcatacga
     3061 gtcaatgtcg taggtttatg ggcatcagaa acagatacta agaaatcaaa ttgttcgaaa
     3121 tttttctcaa atttttcaca cgattcctta atatgctctc ctgatctcaa cggcgaagtt
     3181 ggttgaagta gcataaaata gtcaaactct actgatctat attgatttaa cacatcttca
     3241 atcacgacaa aagtactcgc cttatcactg gctaaatgct cggcacgttt aataaattca
     3301 attggataat gtgagagcaa atcaatatat tcttgggaat cagtactaac gataattttc
     3361 tcaaattgcc ccgactcaat cgcagcttca atagaatagg ccattaacgg cttaccgttg
     3421 gctaataata catttttatt cggcaagcct tttgaaccgg ctcgggctgt aataattgca
     3481 atttttttca taaatttgac cgcttgttaa acacaaaatg atggagcttt catcccatca
     3541 ctatattata ttacatctga ttttcaaaac gagaatcttg aattaattga tcttcttcaa
     3601 aatcctgttg tgcttcttta cctagcacat cataccaaaa catcgggcta atgccattac
     3661 cggggcgttt agtcgtaata ttttcggttg taaaaatttc gcctttttta attggacgtg
     3721 ccgcaataat tgattttctt gccacaattt tattttttgc ttccgaatta gtgactaatt
     3781 tctcggaaga acccagcgat ttttccaccg cacgaatgcc ttcacacagt aatttcagct
     3841 cttcaggtgt aaccgaagct ttatgatccg gaccttcaaa gtttttatct aaggtaaaat
     3901 gtttttcaat gaaggtaatg ccgtaaggta ctgccgccaa ccctgcaaaa taaccggcag
     3961 agtggtcaga aaaacctaaa ctatagtcgc caaactcctg ttttagctga tggaacgcat
     4021 ttaaattcac atcttcataa ggtgtcgggt actcggtatt acaatgtaaa atcgtaatat
     4081 cttttttcgc tacaccgtta tcttccaata cttttaatga ggcttttgtt tcttcaatgg
     4141 ttgccatacc ggtagaaata acgatcgtct tgccttcaat cggaagtcgt gcaatttttt
     4201 ctaaatacgg caaattggtt aattcaccag acggaatttt ccacactttt tgttgttggc
     4261 ttgccaagaa atcaatcgac tcgaaatcga atggcgtaga gaatacctct aaccccaatg
     4321 aacgagcgta agcctctaat ttcacaaact cctcataagg taactctaat ttgcgggtca
     4381 tttctaattg ggaatcagcg gtgccggtcg ttactttttg atactcggct ttaggggcat
     4441 atttagagat caacttatcc gctttaaagg tttggaattt caccgcatcg acaccacact
     4501 ctttcgctac atcaaccatt ttctttgcta acgcaggatc gccgttatgg ttacaaccga
     4561 tttctgccac aataaataca tttaccatta ttttatatcc ttaatatatt ttgctggaac
     4621 gcctgctaca actgtgcgag gctccacatt tctaattacc actgcaccgg agccaaccaa
     4681 tgcactttca cccactctta gctgtccgtt cacaacagag gaactaccaa taaaagcatg
     4741 atcttcgaca attacatcgc catttagtgt cgtattggtt gaaatattgc aatgactgcc
     4801 gataaaacaa ccatgctcaa ccagcgattt agtgttaatg atcacattat cgcctacggt
     4861 tacgccactg tttacaattg ccatttttcc aacaaacact ccaatgccta gagtggaatt
     4921 tttggacacc aatgcggttt tatctaccac attaattatt ctacacttat atttttgtag
     4981 cttagagaat ttttctaaac ggtaactatt atttccaata caaataaaat agtgataatt
     5041 atctcgttta gaaaaacaat caattgttga agctagaata ggataaccta agtgcacact
     5101 accttcaggc ttaaagttat cgataaatcc acaaaattca tattgttcgt gatcaagtga
     5161 atctaacact gatttggcat agccaccggc accgatcaaa atcaattttt ctcttttaga
     5221 cttttgttgc attgctatca cccatgatga atttcaattc atatggagta
//
LOCUS       DANLUT010000157         5191 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLUT010000157 DANLUT010000000
VERSION     DANLUT010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..280)
                     /locus_tag="PXB38_002151"
     CDS             complement(<1..280)
                     /locus_tag="PXB38_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5354423.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQNDLSL"
     gene            complement(442..1782)
                     /gene="gdhA"
                     /locus_tag="PXB38_002152"
     CDS             complement(442..1782)
                     /gene="gdhA"
                     /locus_tag="PXB38_002152"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL5354424.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            complement(1975..2316)
                     /gene="bamE"
                     /locus_tag="PXB38_002153"
     CDS             complement(1975..2316)
                     /gene="bamE"
                     /locus_tag="PXB38_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL5354425.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            complement(2383..3384)
                     /gene="yejK"
                     /locus_tag="PXB38_002154"
     CDS             complement(2383..3384)
                     /gene="yejK"
                     /locus_tag="PXB38_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL5354426.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLIWDELNDTLTIKGLPANLRDQLERNK"
     gene            3465..3851
                     /locus_tag="PXB38_002155"
     CDS             3465..3851
                     /locus_tag="PXB38_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5354427.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
     gene            3883..4620
                     /gene="pgeF"
                     /locus_tag="PXB38_002156"
     CDS             3883..4620
                     /gene="pgeF"
                     /locus_tag="PXB38_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL5354428.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEAFIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            4714..4789
                     /locus_tag="PXB38_002157"
     tRNA            4714..4789
                     /locus_tag="PXB38_002157"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4747..4749,aa:Ile,seq:cat)
     gene            4992..>5191
                     /locus_tag="PXB38_002158"
     CDS             4992..>5191
                     /locus_tag="PXB38_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL5354429.1"
                     /translation="MTATKKTLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQM"
BASE COUNT         1560 a         1132 c          926 g         1573 t
ORIGIN      
        1 tgagagataa atcattttgc gtacaaatta aatcaagatt ttcatataaa caggcatatt
       61 tcagctctgt aatattgggc aatataatag caattttatt acttgtgcca ctttttaacg
      121 tagaggcttg aatattttta cgataaccca acttttcaac ggcagcttgt actttttcta
      181 ttttagctaa gctaacatta ctttttccgt ttaatacatt cgatactgtt cctaacgaaa
      241 catttgcttc ctttgcgata tctttcatcg taatgatcat atactgccct ttcacatact
      301 gctaaaactg agattggcat agattttacc ataattggca aatgaaatac gatttcaatt
      361 tagcttgtct ctagctacaa cctaaaataa aaaaactgcc tcgatatatc gaggcagttc
      421 ttgaataata gggataataa attaaacaat accctgttct aacatcgcat ttgccacttt
      481 tttgaaacca gcaatattcg caccgtttac atagtttacg aaaccatctg cttcagtacc
      541 attttctacg cagttttcgt gaattgcttt cataatgttg aataaacgct gatctacttc
      601 ttcacgactc caagatagac gaattgcatt ttggctcatt tctaaacctg aggttgccac
      661 accacctgcg ttagccgctt tacccggagc ataaaggatt ttcgcaccga taaagacttc
      721 aacaccacct aatgtggttg gcatatttgc accttctgcc acacaaatac agccgttttt
      781 cactaattct ttagcatctt cggtatctaa ttcgttttgg gttgcacaag gtaaagcgat
      841 gtcacatttc acaccccacg gtttttgacc gtcaaagtat tttaagcctt gttctgttgc
      901 atacacagat aagcgttcac ggcgttcgtt tttcaactct aataatgctt gtaattgtgc
      961 ctctgtcata ccggattcag ggaataagac ataaccgtta gaatctgaaa ccgttaatac
     1021 tttaccgcct ttttgaatca ctttttcagc tgcatattgt gccacgttac ccgaaccgga
     1081 aattaccact gattttcctt cgatctgctg acctttagtc gctaacatag actctgcaaa
     1141 atacaccgca ccataaccag ttgcttccgg acgaattaag ctaccacccc aagtcagcga
     1201 tttaccggtt aatactgaag taaattcatt gcgtaatttt ttgtattgac cgaacatata
     1261 gccgatttca cgacctccca cgccgatatc gcctgcagga acgtcagtat cagcaccaat
     1321 gtggcgatat aattcgctca taaacgcttg gcagaaacgc attacttcgg catcagattt
     1381 gcctttcggg tcaaagtctg aaccaccttt accaccgccc attggcaatg tcgttaacgc
     1441 atttttgaat acttgctcaa aggctaagaa ttttaatacg cctaaatcaa cggttgggtg
     1501 gaaacgaata ccgcctttgt atggaccgat tgctgagttc atttgtacac ggtaaccacg
     1561 gtttacttgc acttgacctt tatcatcaac ccaagtgaca cggaagctaa ttacacgctc
     1621 aggctcaaca atacgcccta ataaaccttg ctgggtatat ttcggatttt tagctaagaa
     1681 aggggcaagg ctaccgaaca cttcttcaac cgcttgatgg aaaggggctt ggttcggatc
     1741 acgttgtttg attttttgga aaagggcgtt taaatcgctc atattatact cctgaataaa
     1801 ttgatgatgt tgtgtattta agatgagcga agtctagcaa gcaattttag ctttgaaaag
     1861 atagattaga aaaatttatc attaaaataa gaaaaattaa gtttaaatgc ttatttttta
     1921 ttcaaaaaaa taagcccact tttaaaagtg ggcttttcga accagcaaat cgtcctattt
     1981 ttgttctgca ttcgcattgc tgtcatcaat ttttgatact aaccctttag catcaaaata
     2041 aataaacaga ttgcgttgtt caggatcttt ataaccttca cgtttaataa acacataatc
     2101 ccaacggtgg gtttcaaaaa tgttctttaa cattggtgta ccaagcaaat attcaacttg
     2161 ttccgctgtc ataccgactt taagttgagc aattttatct tgttctaagt aattgccttg
     2221 cggtacatca atacggtaca ccactttctc aacggttgaa caagccgtta cacccagtgc
     2281 aagcaacatt gcagctaaaa gagatttcat tttcataatt gaccttttga taatccaaaa
     2341 ttcagataac gagataatac ctaaactgat aaaaattttc cattatttgt tacgttccag
     2401 ctggtcacgc agatttgccg gtaatccttt gattgtcagt gtgtcgttta gttcatccca
     2461 aattaaacgc tctcctaata attctgcgtt aaagctaatc gttactcctt tgcccgaacc
     2521 ggaaaatttc gtcagggttt taagggcatt tcgcataggc ggaatattct cttccaagcc
     2581 gtattcttgc tcttgcgtaa attgggcaaa atcgatttca ttcagtgttg gcaatgcgtt
     2641 ggaaagctca tttaacgcaa tttcctctcc actatttatc tgccctttac aatattcaaa
     2701 cacctgcttt ttcacttctc gagtttgagg ggcagataac tccccttgct cacaataatc
     2761 gctcaccgct tgcaacaagg tttgattttg caattgtgga ttaaaccctt cttccgcact
     2821 taaaaaatcc ataaagaaat cggcaatttt acgccctact ctgcctttca caaaagttaa
     2881 atagcgattt gacgttgcgt caagtttcag ttcagttaaa ttaatgcggc aggcaatatc
     2941 atattgtgca atttcgagat attgcgtgcg tttaatctct aactgctcat caaccagcat
     3001 tgaattacgg ctatcaatca acgcaataaa caaatattcg gtagctaaaa aagtgtaacg
     3061 acacaaaata aaagtgccac catcggcaaa cggatattta atcagctctg ctgcaagcat
     3121 tttggcacag ctatggctaa aaggtaaaaa atcggtttct tgctccaaca agcggttgag
     3181 ctgttgagcg aaaaccgact ccggtttaaa tataccgtaa gcctttgctt tactttgata
     3241 ggcttgatgt aattgcaaca tcatttgatc gacttcaggg gaaattgcca ataaattttc
     3301 tcgcaaaaac gtattaagct ccgggttctc gccctctgtt ttttgtaatt gatgtaacac
     3361 gatttcagaa acattaatgc tcattaattc acttctcttt attccaaata ataagaaaag
     3421 atattatcat taatccgttt atttttcatt aagaggaaca caagatgaca gttatccaca
     3481 cagaaaatgc accggcagcg attgggcctt atgtgcaagc agttgattta ggcaatatgg
     3541 ttttaacttc tgggcaaatt cccgtgaatc ctgaaaccgg cgaaatcccg agtgatattg
     3601 tgcaacaaac ccgccaatct ctgaacaacg tgaaagccat tatcgaacaa gccggcttaa
     3661 ccgttgccga tattgtaaag accaccgtat ttgtcaaaga tcttaacgac ttcgcaaagg
     3721 taaatgcgga ataccaagcc ttcttccaag aaaacgaaca ccctaatttt ccggctcgtt
     3781 cttgcgtaga agtggctcgt ttaccaaaag atgttggcat tgagatcgaa gcgattgcag
     3841 tacgccgata acaagcggtc attttcttga gattttttgc aaatggataa aattattcca
     3901 aattggaatg tgcctaaaca tattcacgca ctgacgacct taagaacagg cggagtaagc
     3961 aaaccgcctt ttgacagttt caacttaggt gatcacgtta atgacgagcc acaagatatc
     4021 gctcaaaatc gtgctttatt ggttgagaaa tttcaattac cacaagctcc gctgttttta
     4081 acccaaactc acagcacccg agtgattgaa cttccctatt caggtgataa tattaaagcc
     4141 gatgcgattt acaccaatca accaaaccaa gtctgcttag tgatgactgc agattgtttg
     4201 ccggtattat ttgccagcca agacgggtcg gaaattgcgg cggcacacgc cggctggcgt
     4261 gggttatgcg atggcatatt agaggcgacg gtagagaaat tcaactgccc gccacacgaa
     4321 atatcagctt ggctagggcc ggctatcgga ccgaatgctt ttcaagtcgg gagtgaagtg
     4381 gcagaccaat tctgtgcttt tgacccaaga gcgaaagaag cctttattga agacagcact
     4441 acaagcggta aatttttagg aaatctttac caaattgcca cccaacgtct gaataaatta
     4501 ggcattaccg ccatttcagg cggtgaatat tgcacctaca gccaaccaga actgtttttt
     4561 tcctaccgcc gagacaaaca aaccgggcga atggcaacct taatttggcg aacagaataa
     4621 ccctattttc tctcgttcaa taattaaccg agtaatcttc tgcctctaga cgactactcg
     4681 gtttttctct ataattccaa ccacttttca aatcccccca tagctcagtg gttagagcag
     4741 gcgactcata atcgcttggt cgctggttca agtccggctg gggggaccat ttaagcgttg
     4801 catattgtct ttcattgtct caaatttact ataaaatcaa gaacttagat tattttatag
     4861 tctcttattg tcttctttag ttgcattgta tcttagcgtt tatgatccct aaaatgatcc
     4921 ctattttgaa aacgggaaaa tttagggatc ataaacttcg ataaaccctt atatatcaag
     4981 gattagaaga aatgactgca actaaaaaaa cactttcaga cacattacta aaaaatctta
     5041 aatattcccc aaatgcgaag cctatcgcag acagtaacgg gctatttatt cttgcacaga
     5101 aaaaagcgaa agtatggatt tatagctata tcagccccaa aacaggcaag cgaagcacaa
     5161 aaaatagaat cggtagctat ccgcaaatga g
//
LOCUS       DANLUT010000158         5009 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLUT010000158 DANLUT010000000
VERSION     DANLUT010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5009
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..151
                     /locus_tag="PXB38_002159"
     CDS             <1..151
                     /locus_tag="PXB38_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5354430.1"
                     /translation="SVFNELLEEPFLLSEYDAYQFTNEVIKFHSEESLKAWGGCLIWE
                     QNNGS"
     gene            283..981
                     /gene="aphA"
                     /locus_tag="PXB38_002160"
     CDS             283..981
                     /gene="aphA"
                     /locus_tag="PXB38_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL5354431.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1162..1923
                     /gene="udp"
                     /locus_tag="PXB38_002161"
     CDS             1162..1923
                     /gene="udp"
                     /locus_tag="PXB38_002161"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL5354432.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
     gene            1998..2594
                     /locus_tag="PXB38_002162"
     CDS             1998..2594
                     /locus_tag="PXB38_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354433.1"
                     /translation="MKKWLMLITLIFGITACFSSLEFDESKQEKINSFLIVGNKLYVV
                     GELHDYEFEHQQVAELNNFLKSLIANKIKSVEANFEVKESKKVEGSYRIILDGKSLTE
                     SERSTVMDTFHFNSAQNPSITYQAEGNLVKLANREELLQKFRFKQALEANVRYYKMKS
                     GLQNTAEGALSIVMLPVAVVAVLPFYMFWVGACATYGC"
     gene            2605..3090
                     /locus_tag="PXB38_002163"
     CDS             2605..3090
                     /locus_tag="PXB38_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL5354434.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(3128..3997)
                     /locus_tag="PXB38_002164"
     CDS             complement(3128..3997)
                     /locus_tag="PXB38_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5354435.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            4127..4918
                     /locus_tag="PXB38_002165"
     CDS             4127..4918
                     /locus_tag="PXB38_002165"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL5354436.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT         1552 a          910 c         1047 g         1500 t
ORIGIN      
        1 atcagtattt aatgaattat tagaggagcc atttttatta agcgaatatg atgcctatca
       61 atttacgaat gaggtgatta aatttcattc agaagaaagc cttaaagctt ggggaggttg
      121 cttgatttgg gaacagaaca atggctcata agcgttaagc gtaatcgttt gcttgtgatc
      181 atattcacaa aataaggttt ttgtattagc taagagtgcc taataagatt aaaataggta
      241 tggttaatca tatggaggta ttttataaaa tttacattaa aaatgacggc agcgacaatg
      301 tttgcatctc ttattgcttt ttcagcacaa gcaggcggac caaaagtagc ttatacccag
      361 ccgggaattg atatgcgaac acatgaagca cagcaagcgc caattcattg ggtatctatt
      421 gagcaaatta aagaaagcat caaagattta ccccctatgg cggtaagttt tgatattgat
      481 gatactgttg ctgcaactag cggttgcttc cactacggaa agcaaaaata ttcgccagac
      541 gatttcagct acttaaaaaa tcaagatttt tgggacgaaa ttaatgctgg ctgtgataaa
      601 tattctttgc caaagcaagt tgctattaat ttaataaaaa tgcaccaaga acgtggtgat
      661 caagtttatt taattacggg gcgtaccgca ggtaaaaatg aacaagttac aacgattatg
      721 caaaagtatc ttggtattaa aaatatgcaa ccggtaaatt ttatgggggg gaaagcacat
      781 tcaacaaaat atgataaaac ccctgcgatt attgaacata aggtgcaaat tcactatggt
      841 gacagtgatg atgatatctt agctgcccgt gaagccggta ttcgaggtat tcgtatactt
      901 cgtgcagcaa attctaatta tacgccattc cctcaggccg gaggatatgg tgaagaagtt
      961 gttgtcaatt caagttatta atttcttagt ctgaaatatg gccaccattg cgtggccatc
     1021 attttttatt tatataatga cgaaaccgtt tacctttgat ctagttcaca aaatcaaact
     1081 ttgcttgcaa aaaattgtcg taaattaacc gcttgctaag atagaatggc tcatatccag
     1141 ttagataaaa aggagataaa aatgtctgaa gtatttcatt taggtttaac caaagccatg
     1201 ctcaaaggtg caaaaattgc aatcgttccg ggcgatccgg ctagaagtga acgtattgcc
     1261 aaaaaaatgg acaacccaga gtttttagcc tcaacccgtg aatttacctc ttggttaggt
     1321 tatttagatg gcgaaccggt ggtggtttgt tcaaccggta ttggcggacc gtcggtgtcg
     1381 atttgtgtgg aagagttagc acagttaggt gttcgcacat tcttacgcat tggcacaaca
     1441 ggtgcaattc aagagcatat taatgtaggc gatattttaa ttaccaccgg agcggtgcgt
     1501 ttagatggtg cgagccaaca ttttgcacca atggaatatc ctgcagtagc gaattttgaa
     1561 tgtactaatg ctctttatgc agcagcagtg gaatcaggcg ttacacctta tgtggggatt
     1621 acagcttcat cagacacttt ctacccgggg caagaacgtt acgacacttt caccggcaag
     1681 atctatcgtc atttccaagg ttcattaaaa cagtggcaag atctcaatgt tatgaatttt
     1741 gaaatggaat ccgccactct ctttacgatg tgttcggcat taggcttgcg agcaggtatg
     1801 gttgctggtg taattgtaaa ccgcactcaa caagagattc cgaatgaagc aaccattcac
     1861 gacaccgaac ataaagccgt ttcggtagta gtggaagcgg caagaaaatt aattaaaggc
     1921 taatctttaa atttaaaagc aaaaaaggta aattgtcttt gttacaattt accttttttc
     1981 tttttaggga gctttctatg aaaaaatggt tgatgttaat tacattaatt ttcggcatta
     2041 ccgcttgttt ttccagttta gaatttgatg aaagtaaaca agaaaaaatc aattcattct
     2101 tgattgttgg taataaatta tatgtggtgg gtgaactgca cgattatgaa tttgagcatc
     2161 agcaagttgc ggaactgaat aattttctca aaagcctaat tgctaataaa atcaaatctg
     2221 ttgaggcaaa cttcgaggtt aaggaatcca aaaaagtgga aggtagttat agaattattt
     2281 tagatgggaa atcacttaca gaaagtgaaa gaagtacggt gatggatacc tttcatttta
     2341 attcagctca aaatccatct attacttatc aggcggaagg gaacttggtg aaattagcca
     2401 atagagaaga gcttttgcaa aaattccgat ttaaacaagc gcttgaggcg aatgtgcgtt
     2461 attacaaaat gaaaagtggt cttcaaaata cggctgaagg agcgttaagt attgtaatgt
     2521 tgcctgttgc tgtagtagct gttttaccat tctatatgtt ttgggttggt gcttgtgcca
     2581 cttacggatg ttaaataact ttttatgtat tctctatacc tgaaaatttt atcggaatgc
     2641 gattggtgtt gtgatccaaa aacactttct acctaccagc aagaatggct tctgcacgaa
     2701 gggtcactta cccaaaaatt gtatgatgtc gcaaccaatt tcaacgtgga agtagtacaa
     2761 gaaaagtgga ttgcaaaaaa cagtgaaaaa acgaccgctt gtaatgaaga tgtttggtcg
     2821 cgagaagtgt tactgaaaga tggtgaaaaa aattggattt ttgcccaaac tcttgtgcca
     2881 agatcaacaa tcgaaaatat cgctcaaaac gtgttggaat tgggcaatca gccgattggt
     2941 ttatggctat tttctcaaaa tcctactcgc accaaattag aatggacaca aacagagaac
     3001 ggtttattcg ctcggcgtgg ggtgtatgaa attagagggt attctctgga aattcgagag
     3061 ctttttttag aaacctttcc ttatttataa aaaaatcggt tggtaatgac accaaccgat
     3121 tttcatctta ttttgccaag aactgataaa ttgcagccat atccacttcg ctcaagcctg
     3181 aatcattggc ttgattgtag gttttagtgg cttgctcaat aagcgggtaa gatttgccta
     3241 atttcgcaat ttcttcgctt gccaaattaa aatctttggt catatgtttc atcataaacg
     3301 caggcggaaa ttcattagct tggtacatcg gcacttttgc ttggaagatc gggctgttca
     3361 taaacgagcc tgaaatcatt tcgattactt tctctttcgg aatgccatat tggtcggcga
     3421 agtttaacgc ctcgccatag gcttgaatga agatgcccag tagcgagttg atcatcaatt
     3481 taatcccacc ggctttaccc acttcaccat aatagaaagt ggtggtacta aaggcagcga
     3541 aaagcggttt gagcaactca acggtttctt ctttaccggc agccagtacc aatagtttac
     3601 ctgcttctgc cactttgctt gaaccggaaa ccggagcttc aacaaattct gcaccgtgtt
     3661 gggctagtag agcttctacc gcctggtttt ggcttgggga aatggtgctc atattcacca
     3721 ctactttgcc gtttaattca gccaacactt catcgcttaa cacctgttgc acggcggcat
     3781 agtctgcaat catcaagaaa atcacatcgt aggctttcac caattccaac acagaaggat
     3841 ataatgtgcc gcctgcttca actacctttt ctgcttttgc tgggtcgcgg ttgtaaacgc
     3901 ccacgttcac tccgctattt agcaaatgtt ttgccatcgg ttcgcccatt tgccctaaac
     3961 caatccaacc gactgcttgt gtattaatgt ttttcattat ttttctcctt actgaataaa
     4021 gcaaattgat tattgcgatt ttccctcatc aagtcaaata gagagaactt gaatatagca
     4081 atggaaaaga gtagcatttt agcacttact tttttgaaca ataccaatga aaccaacaat
     4141 tcttttatac gattccggaa tgggcggatt gacgatttac gatgaaatcc gaaaagtgtt
     4201 accgcacgct cactatttat attgctttga taacgctttt ttcccatatt ccgagaagtc
     4261 ggaagcagtt ttaattgagc gagcggtcaa aattgtgcaa aaaattgcag aaaaacaacc
     4321 gcttgatatg gttgttgttg cttgtaatac ggcaagcaca gtggttctgc cggcattgcg
     4381 tgagcatttt aattttccga tagtaggaac tgtaccggca attaaaccgg cagcggcaat
     4441 ttccgaaact aaagtcatcg gcttgctcgc cactaaaggc acggttgctc gcccttatgt
     4501 tgatgaattg ataagaaaat atgctcagga ttgtacggta gaaaaaattg gcacaaccga
     4561 tttggttgaa attgttgaag aaaaacaacg aagcggtaaa gtggatatga accgactaca
     4621 aaaagtggtc gaggcttggc aaggtaagcc ggaattggat acggttatac tcggttgtac
     4681 ccattttccc ttagtcaaag ctgaattaca gcaattattg cccgatgtga aatattttgt
     4741 tgatccgggt gtaggtattg ccaaacgggt gctaagcctt ttggaagaac gcaaatttca
     4801 acaaaaagcc gattttgaaa atcaagcatt ctgcactaaa caaagttctg catttaatat
     4861 caaacaagac gttatgcaga attggggatt taataatctt tcggtgattg acatttaaac
     4921 aaaacaatct gttttgatga aaaaaggttc agttgagcaa aaactttaaa aaagggcttg
     4981 cactcaattt taaaatccct ataatacgc
//
LOCUS       DANLUT010000159         5001 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLUT010000159 DANLUT010000000
VERSION     DANLUT010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5001
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(25..1564)
                     /locus_tag="PXB38_002166"
     rRNA            complement(25..1564)
                     /locus_tag="PXB38_002166"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(1947..3350)
                     /locus_tag="PXB38_002167"
     CDS             complement(1947..3350)
                     /locus_tag="PXB38_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL5354437.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIIEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
     gene            3561..4433
                     /gene="pdxS"
                     /locus_tag="PXB38_002168"
     CDS             3561..4433
                     /gene="pdxS"
                     /locus_tag="PXB38_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL5354438.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGIATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSENLGEAMVGI
                     NEQEIELLMAARGV"
     gene            4433..>5001
                     /gene="pdxT"
                     /locus_tag="PXB38_002169"
     CDS             4433..>5001
                     /gene="pdxT"
                     /locus_tag="PXB38_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL5354439.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKN"
BASE COUNT         1418 a         1119 c          990 g         1474 t
ORIGIN      
        1 acttgctgtc gttctcgatt ttggtaagga ggtgatccaa ccgcaggttc ccctacggtt
       61 accttgttac gacttcaccc cagtcatgaa tcataccgtg gtaaacgccc ccctttcggt
      121 taagctatct acttctggta caacccactc ccatggtgtg acgggcggtg tgtacaaggc
      181 ccgggaacgt attcaccgca acattctgat ttgcgattac tagcgattcc gacttcatgg
      241 agtcgagttg cagactccaa tccggactta gacgtacttt ctgagattcg ctccccatcg
      301 ctggctcgcc gccctctgta tacgccattg tagcacgtgt gtagccctac tcgtaagggc
      361 catgatgact tgacgtcatc cccaccttcc tccggtttat caccggcagt ctcctttgag
      421 ttcccgacct aatcgctggc aacaaaggat aagggttgcg ctcgttgcgg gacttaaccc
      481 aacatttcac aacacgagct gacgacagcc atgcagcacc tgtctcatgg ttcccgaagg
      541 cactctcata tctctacaag attccatgga tgtcaagagt aggtaaggtt cttcgcgttg
      601 catcgaatta aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc atttgagttt
      661 taaccttgcg gccgtactcc ccaggcggtc gatttatcac gttagctacg ggcaccagag
      721 ttaaacccca atccccaaat cgacagcgtt tacggcgtgg actaccaggg tatctaatcc
      781 tgtttgctcc ccacgctttc gcacatgagc gtcagtacat ttccaagggg ctgccttcgc
      841 cttcggtatt cctccacatc tctacgcatt tcaccgctac acgtggaatt ctacccctcc
      901 ctaaagtact ctagttgttc agtctgaaat gcaattccca ggttaagccc ggggctttca
      961 cacctcactt aaacaaccgc ctgcgtgccc tttacgccca gttattccga ttaacgctcg
     1021 caccccccgt attaccgcgg ctgctggcac ggagttagcc ggtgcttctt ctgtgattaa
     1081 cgtcaatcga ctgttctatt aaaacaatcg ccttcctcgt caccgaaaga actttacaac
     1141 ccgaaggcct tcttcattca cgcggcatgg ctgcatcagg gttcccccca ttgtgcaata
     1201 ttccccactg ctgcctcccg taggagtctg gaccgtgtct cagttccagt gtggctggtc
     1261 atcctctcag accagctaga gatcgcgggc ttggtgagcc tttacctcac caactaccta
     1321 atcccacttg ggctcatctt atggcaggtg gccaaatggt cccacccttt agtcctaaga
     1381 cattacgcgg tattagctac cgtttccagt agttatcccc ctccataagc cagattccca
     1441 agcattactc acccgtccgc cactcgtcac ccaaggagca aactcctatg tgctaccgtt
     1501 cgacttgcat gtgttaagcc tgccgccagc gttcaatctg agccatgatc aaactcttca
     1561 attcaaaaag tttaatcgct caatactgct gacataaaat cgcacttcca aatttaaacc
     1621 taattaaaat taagttaaaa gaaagtaatg aatttctagt tagcacctat taagacttca
     1681 aaattaaaaa aatatttttc aatcaagtca atcaacaagt gcccacacag attgtctgat
     1741 aaattgttaa agaacaaaaa gaaacgacgc accgaattca acttttaaat gttcacaaca
     1801 gtgcgtcgtt gtgtgccatg cattatacgc aaaacaaaat gccttgcaag gagaatttgg
     1861 caattttttg caaaaatcac taaaataatt accacttgcg tgtttttaag gcaatttgct
     1921 aaaaattaaa gcagttttga tacttgctat tcgttgtcta aaattttttt caggctctct
     1981 gctacataat taatctgatc atcttttaaa ttagagtacc caattataaa agcattttgc
     2041 tgaatttgag atttatcttg ataataagca gacaatgcga caaattttat accttgttct
     2101 tctgctgcct gcaaaatttg cctttctgtt aatgttgtat ttagctgtac aatgaaatgc
     2161 aagcctgaat gttcttcttt tattgcaatc ttttctgcta aattgccttg cttgaaagct
     2221 tttagtaatt tatccctctt tttttgataa tacgctcgca ttcgattgat atgcttttca
     2281 aaatagcctt gttgaataaa ttctgccaaa atatattgct caaaattgga aacggtagaa
     2341 gcataaaacc ctaattcctg ctgaaaacga ttcagtaatt ctggtggcaa aaccatatag
     2401 gcaattcgta cagttgaaga gagcgtttta gaaaaagtat tcatatagat aactcgcccg
     2461 agcatatcaa tagatttcaa tgcaggaatt ggttgtccta caaaacgaaa ttcgctgtcg
     2521 tagtcgtctt ctataatata tctttcagct ttttgtgcaa cccaagctaa caactcataa
     2581 cgtttggcaa tcggcattac gtgtcctgtc ggaaaatggt gtgatggcga ggtatgtatc
     2641 acgtccacat tctttgaatt taactcatcg attgaaaatg gcatcgatac tgtggctgtt
     2701 gataagcgat aactgtgata aattctgcgc aatttatcgt aactgggctc agttagtgca
     2761 taatgtttat ctaagcctag aagctgaatg agcaaaccgt aaagatactc cgtacccgct
     2821 ccaataataa tctgtgttgg attaacgatc attcctctaa aggctcgaag atgattggct
     2881 atcgcaaatt ttaatgtcca tacaccccca ctctcagcac gctccattag ctcactttgg
     2941 tgtgttttca gcacttcgcg tactaatttt gtccaaaccg aaaacggaaa attttctgct
     3001 aaagtctgtc gattagttaa atctgcctgc cattttttat ttttctcata ctgttctgaa
     3061 ctgatttttt gtagctgaac tgatatggct tccttttttt ctggtaaatt taaagcattc
     3121 acaaaaaagc cttttttagg ctgagtattc acataacctt ctgctactaa ctgttggtaa
     3181 gctgtttcca ctgtcattac tgaaatgcct aaatgctttg caaaagcccg tttagacggc
     3241 agtttatccc ctgctataag tatgttgctt tcaatgtcgt tttttagaaa acggtaaagt
     3301 tgctcataga gagcggtgcc ttcttgtgtg ttaaaagtgt aggtaagcat aatctgacat
     3361 gataagaaaa acataaaatg gtcattttaa acagttcaga ttaaattaca atacatgctg
     3421 tttcctcact caaattggct gagtgtattt aaattggtag atgaacactc gcatccagcg
     3481 aatataaaaa taaacttaat gccgagctaa tcgaaactac gaaaagttca attattcaac
     3541 aattagaagg aaaaagtaca atgactaatc gctatgattt aaacagacaa cttgctcaaa
     3601 tgttaaaagg cggtgtaatt atggatgtaa ctacccctga gcaagcctgc attgcggaag
     3661 aagctggagc ttgtgcagta atggcactag agagaattcc tgcagatatt cgtgcagctg
     3721 gtggcgtttc tcgtatgagt gatcccaaga tgataaagag tatccaagca gcggtatcca
     3781 ttcctgtaat ggcgaaagta cgtattggac acgttacaga agcacaaatc ctgcaagcga
     3841 tcgaaattga ctatattgac gaaagtgagg tgctttctcc tgcagatgat accttccaca
     3901 ttaacaagcg taaatttgaa gtgccatttg tatgtggagc aaaaaattta ggcgaagccc
     3961 tacgtcgtat taatgaaggc gctgctatga tccgtagtaa gggcgagcca ggaacaggca
     4021 atgtggtgca agcagtacat catcttcgca aaatgaaaca agaaattgcc cgcttggttt
     4081 cacataccac agatgaactt tatcacgtag ctaaagagct ccaagtacca tttgatttag
     4141 tacaatatgt acatcagtac caaaaattgc ctgttgtcac ctttgctgct ggaggtattg
     4201 caacccctgc cgatgctgca ttgatgatgc agttaggtgc agaaggagtc ttcgttggct
     4261 caggtatttt caagtcaggc gatcctgcta aacgagcgcg ggccattgta caagctgtta
     4321 ccaactacaa cgatcctaaa ttacttgcgg agctttctga aaatttaggt gaagcaatgg
     4381 taggaattaa tgagcaagag attgaattgc taatggcagc aagaggtgtc taatgaaaat
     4441 tgctattctt gctctgcaag gtgcatttag cgagcatact gataaactcc agcaactagg
     4501 ggttgaaagt atggaaattc gtcaacttgc tgatttaaac caagattttg atggtctgat
     4561 tttacctggt ggcgaatcga ctgttcaagg taaattatta cgtgaattag gcttgcttga
     4621 gccgcttcgt caaaaaattt taaatggctt gccaacgctt ggaacttgtg cgggtttaat
     4681 tttgcttgcg gaaaatttgg taaacgacga taaaaaacat ttggctactt tgcctgtaac
     4741 agtgaaacgt aatgcttacg gaaggcaatt aggctcgttt ttagtagaag aagaagttaa
     4801 atatctcggt aaaattcctc tcacattcat tcgtgcgcct tatatagaaa gtactggaaa
     4861 agatgtagaa attttagcca agataagcgg taagattgtt ggagtaaaat accaaaatca
     4921 gataggtata tccttccatc ccgaagtgaa taatgattta agttttcacc gctattttgt
     4981 ggaaatgtgc cgaaaaaata a
//
LOCUS       DANLUT010000160         4975 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLUT010000160 DANLUT010000000
VERSION     DANLUT010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4975
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..360
                     /locus_tag="PXB38_002170"
     CDS             <1..360
                     /locus_tag="PXB38_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354440.1"
                     /translation="TIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRVLERKSNRLSPT
                     KGSIRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQPLTQAFDRELKN
                     YPEQVQAELAKQIAGKL"
     gene            357..752
                     /locus_tag="PXB38_002171"
     CDS             357..752
                     /locus_tag="PXB38_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354441.1"
                     /translation="MKIHTKIRKEVLELLQTKLPDIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            780..1421
                     /locus_tag="PXB38_002172"
     CDS             780..1421
                     /locus_tag="PXB38_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354442.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1504..1905
                     /locus_tag="PXB38_002173"
     CDS             1504..1905
                     /locus_tag="PXB38_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354443.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            1950..2180
                     /locus_tag="PXB38_002174"
     CDS             1950..2180
                     /locus_tag="PXB38_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5354444.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRTAQLAHLTAMINRDPKGK
                     APELAEFMPFFNRVDEAEEMEDDGVADYLAKR"
     gene            2248..2514
                     /locus_tag="PXB38_002175"
     CDS             2248..2514
                     /locus_tag="PXB38_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5354445.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            2518..2787
                     /locus_tag="PXB38_002176"
     CDS             2518..2787
                     /locus_tag="PXB38_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5354446.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            2862..3125
                     /locus_tag="PXB38_002177"
     CDS             2862..3125
                     /locus_tag="PXB38_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354447.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LSIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            3185..>4975
                     /locus_tag="PXB38_002178"
     CDS             3185..>4975
                     /locus_tag="PXB38_002178"
                     /inference="COORDINATES: protein motif:HMM:NF017890.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5354448.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVDDGKISTVEMVKGLKNSSGYVDELAGKMGVTLDGAMTNLSTRFTKFVG
                     DTDKAVGGSEALAKSINYIGENIDTLSPILAGAVVSFTTMYAGNKVSSVLNMVSATAK
                     HRWEIFQKAQELNNERNATIQAAIAEKNKIAIELTHTQSYIRNLQAQLNLATTEKQRS
                     LLSAELQVQTVRETNLINAKTAAVTRLATAQKATTAFGAALGLVGGPLGALSIGLGVA
                     IPLLMDFFTNAEQAKQKSLEFAQSLDQIKERLPQMTKLELEVSINDTQDSIKAQKDKI
                     KEITQELEQLEKKASQTKISYYYAGQIHEVAKSAEQMRKEMAAVTAKKRELEVANQDL
                     ASSEQSLAEQIKNVPLIEMRQQFIDLYPHID"
BASE COUNT         1737 a          956 c          997 g         1285 t
ORIGIN      
        1 acaatcaaag gtagagcaaa aatgacggca aagcccacgc cgtcaagatt gcaagccacg
       61 attaaggtta atcgatcaca tatgccgatg attcgggtac tagagcgcaa atccaaccgc
      121 ctgtcaccca ccaaaggcag tattagagtt gggaaacaca ctgtacaacg tggttttcgc
      181 caacgactcg ccaatgggcg aacgcacatt atgtaccggc aaggtcgtaa gcgttacggc
      241 attgatgtag caaaagtgcc gttatcccaa ccactgacac aagcatttga tcgagaattg
      301 aaaaactatc ccgaacaagt gcaagcggaa ttagctaaac aaattgcggg gaaattatga
      361 aaatccacac aaaaatccga aaagaagtcc ttgaattatt acagactaaa ttgccggata
      421 ttgataattt ttataacggg ctgccaactt ttattgatat tgaggaggaa caacttgcag
      481 tatcggttta tctcgatgat atcagtctgc aagaaataac tgtttgtaat aatcaatggg
      541 acgccaagct caatattaca atccatctga aatctaccga gagtgcagaa gatgaattag
      601 acgaatgggc ggaaaaaatt cgtgaaatta tcgatgatta tcccgaattt gagcatttag
      661 agtcagtcgc gctctctcag tatcaatatg agcaagacca gaatcagcgt acgtggcaca
      721 tggcgacatt aatctttgat gttgagtatt aaacaaataa tctctatagg agacttaaaa
      781 tggcaaaaac aacaaaagtc caaggcacga aatttagaat tagcgttgga cgtgaggctc
      841 aaaaagcaat taccgcaatt aacttaaata ctgctactct aacgattgca tcctcaggct
      901 ataaaaaagg tgatgcaatc gagcttacag gttgcggtca attagatggt atctacccgg
      961 tgttatcagt aactaccgat caggtaaaat tatgcgaaga agtgaactgg acaggtaaag
     1021 atttaccagc taattacacc aaagccaagg cggcactagt gcaatactcg gagcaattct
     1081 gcgcggtaaa aaacattgaa aaatctgatg atactttgag taccgaagat gtaacaacgg
     1141 tttgttcaga gggcacagaa accgagccgg gtgaaattga atttggttcg atcaaactca
     1201 gtttcttcca caagcctact accgaaatgc aaacccgatt gcgcaaactc ttttacgaca
     1261 aatccacctt tgcctacaaa ctggaactac cggataacca tggcacgacc tatggcgaag
     1321 gctttattga ggccggcaac ggtttctcgg gcgaagttaa gggtaagtat gaaggctctg
     1381 tatctattaa gccaagcaaa cgtgactact tgttagttta attgcaagaa atcaaaaaat
     1441 tcgaccgctt gtagaaataa caagcggtct ttttatatca gaattttaca aaaggaacga
     1501 acaatgacac tgcgtgagaa actccttgct aataaaccaa aattgcaacc tatcgaaatc
     1561 aacggcgaga cctactacct gcgtgaagct actgttggtg atatgaacaa gcagattttt
     1621 gaaacccgaa gctggctcat tcaacaagct gaacaagaaa atgttgaatt accggcagaa
     1681 gatgatgaaa cctttgatga ggctctcaac cgttttggcg aaaaataccg ccttgctcaa
     1741 tcggttgcct accgcttatg tgacgaaaac ggtgcattac tgtttaaccc acttaacatt
     1801 gacgatctca atgcgattgc cgaattagac agtaaagtga ttatcgactt taaccaagcc
     1861 gtgtccgccc caaaagactc agcgagcgaa gaaagttcca aataaccctt tcgctcgcac
     1921 tgggtaaaac ccttgaagaa atcgaacaaa tgcctgaacg ccactttgcc gaatatcagc
     1981 ttttttatca agagcaacca ttcggcttgt ggcgggaaga ttaccgcacc gcccaacttg
     2041 cccacttaac cgctatgatt aaccgtgatc cgaaaggcaa agcccctgaa cttgcagaat
     2101 ttatgccgtt ttttaatcgt gttgatgagg cagaggaaat ggaagatgac ggcgtggcgg
     2161 attatttggc gaaaaggtaa atctcttgta tttcattgta attctgtcta taattggtgt
     2221 aatacataga aatacaggag agataaaatg gcgactatca atgatgcttt cagttttaga
     2281 acaaataccg aaataaaaaa taccgcattt gatgtaatta aaaactatgg aatgacaccc
     2341 tctcaggtgt ttaatatgtt tttaaccgag attgcaaaaa cgaaaactat tccgttaagt
     2401 ttgaattatc aacccaatct tgaaacaaaa ttggcaatgc aagaagcaaa atcaggtaaa
     2461 aatgaagttt atgcctcact tgaagcattt cataaagcaa tgttagcgga gtaaataatg
     2521 ctacaaattt cgccgacaaa cgcatataaa agagacttta aaaagattgc agccgaatta
     2581 gtcggcagtt cggaatatgt ggaagtaatg tattgcctaa taaaccaatt accattggcg
     2641 gaaaaatata gagatcaccc actacaaggt gaatggcaag gctttagaga ttgccatatt
     2701 aagcctgatt tagtgttgat ttacgctgtt gaagataatc tgctccgcct tgttcgttta
     2761 ggatcgcacg ctgaattatt tggataattt ctgtaaaaac taaccgcttg cgattttgtg
     2821 ctgtgggcgg tatagttgga atattaacaa aggagggaaa aatgaaaaat gtacttctat
     2881 ttatcgtaca ctttttctta atcgcaatgc tctcaattat cccaatatta attattcttg
     2941 gagcaatcga aagagatcct tactatactg cgtggatttt ccttagcgta tttttaagca
     3001 ttggagcatt gttatatttt gcaaccattg tttctaagtt aattaacaag ggaaaaacac
     3061 aaacattaga agaaaaacga tatgcagaat attggaataa tgtaaaagtc aatattccca
     3121 aatagtctaa ctgataaatg accaaaagct cgctttatgc gggctttttt attggagaaa
     3181 aacaatgagt ggcttaggaa aattaaccgt taccttagag cttgaaaatg caaaatttca
     3241 gtccgcaatg acgaaatctg attatgaggc acaaaaattt gccaagaact ttatccaaaa
     3301 tatggataga gctagaaatc acgccaaaga atttgccgat cgctcaaccc aatatttaaa
     3361 aaacattgag caagcggcaa agaacctcaa taaaaattct gaattttcat ttttatcgac
     3421 tattggtgga cattatcaat caatgtctag tggcatattg agtgcggcaa aagcctatac
     3481 tgatattcaa aataaaatga aattagtaag cggtagttca gcagaggcag ctaaacgatt
     3541 aactgatgtg tttgatattg cgactaaaac aagccaaagt acagaggctg tttcaggtgt
     3601 ctatcaaaca tttgctcaaa atgcccaatc tctcggactg gctcaaaaag atgtagcaga
     3661 attaactaaa acggtctctc aagccgttgc tgcaagcggc gcaagcagtt ctgcagcaag
     3721 taatgcccta acccaatttg gtcaatcact tttaatgggc aaaatgaaag cccaagaatt
     3781 taactcgctc attactcaaa ccccaaccat tattcaagca atggcaaaag gtttgggaat
     3841 gacaatggca gaatttaaag cagcggtaga tgatggaaaa atcagtactg ttgagatggt
     3901 caaaggatta aaaaattcga gtggctatgt tgatgaatta gcaggaaaaa tgggcgtaac
     3961 tcttgatgga gcgatgacta acctttctac tcgatttacc aaatttgttg gtgatacaga
     4021 taaagcagtt gggggaagtg aagcattagc gaaatccatt aattatattg gagagaatat
     4081 agatacattg tctcctatcc ttgcaggggc tgtcgtttca ttcactacaa tgtatgcggg
     4141 aaacaaagtt tcttcagtat taaatatggt ttcagcaacc gctaaacaca gatgggaaat
     4201 attccaaaaa gcccaagaat taaataatga acgtaatgct actatccaag ctgcgattgc
     4261 tgaaaaaaat aaaattgcca tagaattaac ccatacacaa tcttatattc gtaatttaca
     4321 ggctcaactt aatttagcaa caacggaaaa acaacgctcc ctattaagtg cggaattaca
     4381 agttcaaacc gttagagaaa ccaatttaat taatgcgaaa actgcagctg ttacacgctt
     4441 agcaactgct caaaaagcaa caacagcatt tggggcagca ttaggattag taggtggacc
     4501 actcggagca ttatctattg gattaggtgt tgctattccg ctattaatgg atttcttcac
     4561 aaatgctgag caagccaaac aaaaatccct tgaatttgct caatctctcg accaaatcaa
     4621 ggagcgatta cctcaaatga ccaaattgga attagaggtc agtattaatg atacccaaga
     4681 tagtatcaaa gcacagaaag ataaaattaa ggaaatcacg caagagcttg aacagttaga
     4741 gaaaaaagcc agtcaaacca agattagcta ttactatgca ggacaaattc acgaggtggc
     4801 taaatccgcc gaacaaatgc gtaaggaaat ggcagcagtt actgctaaaa agcgagaact
     4861 cgaagttgct aaccaagatc tagcaagttc cgaacaatcc cttgcagaac aaataaaaaa
     4921 tgtgccgctt atcgaaatgc gacaacagtt tattgatcta taccctcata ttgat
//
LOCUS       DANLUT010000161         4946 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLUT010000161 DANLUT010000000
VERSION     DANLUT010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            127..1116
                     /gene="dusB"
                     /locus_tag="PXB38_002179"
     CDS             127..1116
                     /gene="dusB"
                     /locus_tag="PXB38_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL5354449.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            1121..1417
                     /gene="fis"
                     /locus_tag="PXB38_002180"
     CDS             1121..1417
                     /gene="fis"
                     /locus_tag="PXB38_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL5354450.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(1522..4320)
                     /locus_tag="PXB38_002181"
     CDS             complement(1522..4320)
                     /locus_tag="PXB38_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL5354451.1"
                     /translation="MKEHTFHYSPIALAVIFSVSHSQLFAKQHQMANDHSAVLDEVVV
                     TESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSGYA
                     IRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEYGS
                     GALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALVIA
                     THRHGKETKIHSEANKLKHNIRRITGFENRYDLYPDSTQNAPGGSFFIVEDTCPTLDC
                     TPRARPKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLDYK
                     SNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINIRVDNLSRKNSS
                     VYEGDNILDGLVFDRRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLS
                     ADKQDIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDK
                     ALNAGQGVFKQTHKLNLGLGFDRFNSLMDHGDITAQYTKGGYTSYRGRGRLDDPYIYR
                     RNPRSIETVSLCNNTHGDIINCEPRKIKGGSHFVSFRDLITSEYVDLGLGVRFDQHRF
                     KSDDPWTLSRTYRNWSWNGGITLKPTEFMSLSYRISNGFRVPAFYELYGKRDHIGLKD
                     NEYVQREQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKS
                     HCFSNYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLNDSRLD
                     SVNDPILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVVGTRHHGIYRVDL
                     GGKLTGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNY
                     TRFAAPGRNFSLAFEMKF"
     gene            complement(4408..>4946)
                     /locus_tag="PXB38_002182"
     CDS             complement(4408..>4946)
                     /locus_tag="PXB38_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5354452.1"
                     /translation="VCCNNLDYVKFGTFEQDSQDNKDGHQYLVGERTAVADLPKEARI
                     YRYTGTWDGIIRSKNGGVGGDSPSDKAHGTRSIFDVNFADKKIEGKLIANDGLETNPM
                     LTLDGKIERNGFSGTAKTGEKGFNIDNKSTAGGTVVHLNAKFEGGFYGPQAAELGGIV
                     HSAETNKDKVSITFGGKR"
BASE COUNT         1518 a         1027 c          898 g         1503 t
ORIGIN      
        1 ccagccctca aatcggtact aaactgatcc ataagctatt ataagaaagt acggtattta
       61 ccgtactttt tatttggata tccctctggt taaaattact tcaaatttgt taataaaagg
      121 ttaaaaatgc aaataggaca atatgcaatc aaaaatcgta ttttccttgc acctatggct
      181 ggaatcacag atcagccttt tcgccgctta tgtagccaac ttggagcagg tttaacattt
      241 tcagagatga tgtctaccaa tcctgatgta tggcatactg agaaatcacg gttgcggtta
      301 gcacaccacg atgaaatagg cttaaatgcc gtacaaattg caggttctga tcctgttgaa
      361 atggcaaagg ctgcaaagat aaatgttgag tatggtgccg atattattga tattaatatg
      421 ggttgcccgg caaaaaaggt gaataaaaat atggcaggct ctgctctttt acgtaacccc
      481 aaattagtcg ctcaaatatt agattctgta gtcaatgccg ttgatgtccc tgtgacacta
      541 aaaattagaa caggttggga tcaggaaaat agaaattgtc tgcaaattgc gaaaattgca
      601 gaacaagccg gcataaaagc tctcactatt cacgggcgta ctcgaagctg tttatttaat
      661 ggcgaagctg aatatgaaag tattaaggca gtaaaagaag caatttctat cccagtgata
      721 gcaaacggag acattgactc tgcggaaaaa gcaaagtttg ttctcgacta taccaaagcc
      781 gatgcaatca tgattgggcg cgctagcttt ggaaatcctt ggatatttaa ggaaattaat
      841 gatttttttg aaactggatt atcttcacca ttatcaattg ataaaaaata ccaattaatg
      901 tttaaacata ttgaggattt gcaccaattt tatggtgaag aaaaaggtta tcgtattgca
      961 cgaaaacatg ttggttggta taccgaaaaa ttaaatccgg aatcaaattt taaacgcact
     1021 tttaatacac taagttccac aaaagagcaa ctttatgcat tagaagattt tgttaaatcg
     1081 attcatttag aatctcaatt aagaaaagtt ggataaaaaa atgttagagc aacaacctac
     1141 acaaaaccca ttaacagtaa caatgttaaa tgcacaagcg cagcaggtta ataaaccact
     1201 tcgcgataat gtgaaagcag cattaaaaaa ctatttatct caattaaatg gtgaagatcc
     1261 aacagaatta tacgaattag tattatctga aatcgaacac ccaatgttag atatggtgat
     1321 gcaatatact cgcggcaatc aaactcgtgc agcaacaatg ctaggcatta accgtggcac
     1381 attacgcaaa aaattaaaaa aatacggtat gggttaatct aaccgaccgt taaaacacga
     1441 ttttaattcg tatgtaatta gttagagcca acaaaaaacg ctgaatatac tattcagcgt
     1501 ttttctattt tattttgccg tctaaaactt catttcaaat gctaaactga aatttctccc
     1561 cggagcggca aatcgagtat aattgctacc ccggtcttgg tttactgcat tcacaccgga
     1621 ttggcgcact gattcccaag tggaatattt acgattagtc acattataaa ttcctccacg
     1681 taaggtgtag tttttataat tgatgtaacc ggtaatatca tgggtgtacc aagaaccggt
     1741 cagtttgcca cctaaatcaa cgcgatatat gccgtgatga cgtgtgccta ccacctcatc
     1801 agcgtttttg gctttagaat aggtggtagt aatgccaatt ccccattttt cttctgggtg
     1861 atcgtagccg aatccaagca catagcgtgc tggctgaatc gcatctagaa taggatcgtt
     1921 tacgctatcg agtcttgagt cgtttagttt ccgctctttt acttttacac ggttataagc
     1981 aactgatgaa taaaaaccat ctggcagcat agataaaata ccgtgtaagt caaatttagc
     2041 gactaaattt atcccgttta gtgctacatc ttgaatatta tggtagttag agaaacagtg
     2101 tgatttttgt attattcttt tacatgctgt cgcaatcata tttttatagt tattacggaa
     2161 atagctcaca tcaaggtaac caaattgacc tttaaagcta actccaatct catgattagt
     2221 cgatttttct ggctctaact ggtggctacg ttgctcgcgt tgcacatatt cgttatcttt
     2281 aagcccaata tgatcacgtt taccataaag ttcatagaat gcaggcactc taaaaccgtt
     2341 tgaaatgcgg taagaaagcg acataaactc agtcggttta agcgtaatcc cgccattcca
     2401 agaccaattt cgataagttc ggctaagtgt ccacgggtca tccgatttaa atcgatgttg
     2461 atcaaaacgc acccctaatc ccaaatccac atactcgctc gttatcagat cgcggaagct
     2521 aacaaaatgg ctaccgcctt taattttacg cggttcacag tttatgatgt cgccgtgtgt
     2581 attattacac aaagataccg tttcaatact gcgtggattg cgacgataaa tatatgggtc
     2641 atctaaacgc cctctaccgc ggtagctggt ataaccgcct ttggtatatt gggcagttat
     2701 atccccatga tccataagcg aattaaatcg atcaaagccc aaccctaaat tcagtttgtg
     2761 ggtttgctta aatacgcctt gaccagcatt tagcgcttta tcaaattcta aatgaatgac
     2821 acgatgcttt tcttggtaat tattacgctc agttcgatac atagaccaag atttatccaa
     2881 agtcgggcgg caatttttat ctaccacagg ataatcgcta caatgcaagc gatgtagccg
     2941 gctatatagt tcaatatctt gtttatccgc actgagttta atgctatcca accagcgatt
     3001 attctctggt ttatatttat aggtgaatcc taaacgacgt ttgtggtgac gttcatcaaa
     3061 aaacttcaca tggctatagc gcaacccata agggatcctt ctatcgaaca ctaagccatc
     3121 taaaatatta tccccttcat aaacagaaga gttcttacgt gataagttgt ctaccctgat
     3181 attaatatcg tcttttgtat agtaagctgg cgtttgcata tcacggatat cgtagcgttg
     3241 ttttgtatct tctaagattg cgccaagata atgagacgag ttaaagtgat agccaaactt
     3301 cataaaaaca gaattactct tgtaatctaa agggtttggt gcaatgcgat ctttaccggt
     3361 atattcttgg gctgagagct gctcagtgcg ataaggaatc tgctcaagct gtttgcgctc
     3421 ttcaggcgta tattccggaa atgttctcac tgggaaatta tcgcggttca acttaggcct
     3481 tgcacgagga gtacaatcta atgttgggca agtatcttcc acaataaaaa aagatcctcc
     3541 aggagcattc tgtgtggaat ctgggtaaag atcatagcga ttttcaaagc cagttatacg
     3601 ccgaatatta tgttttaatt tatttgcctc ggaatgaatt ttggtctctt taccgtgtcg
     3661 gtgagttgca ataacaagtg cttcaaaacc acccgcctca ccagccgctg cgatagactg
     3721 taaaaaatgg ctatttttgc tggcataaga ggtcttacta tctaagcccc aatgctgccc
     3781 ctctttaata atatcctgcg catctttagt acgaaaacca atagcaccac ctagcgcacc
     3841 agagccatat tccgcagaac ttgctccttt gcttaactca attgaacgaa tgttttcata
     3901 ctcaatctca ttaattgcac caccattagc atctgaacct agcgtatgat aatgctgcgc
     3961 ttgtggtagc ccatcaacaa gtaagctgac acggttttta tctacacctc gaatggcata
     4021 gccactactt gcaccgcgac cttgttccac caccgaaata ccagggtcat agcgagttaa
     4081 atcacgaata ccaagaattt gatttttact catttcgtga taatttttca ctactttccc
     4141 caagccagtt acttcgtttt gacgttcgtg agcataatgg ctctcagtca caacaacttc
     4201 atcgagaact gcagaatgat cgtttgccat ttgatgttgc ttggcaaata attgagagtg
     4261 tgagacggaa aaaatgactg caagagcaat cggcgaataa tggaaagtat gttctttcat
     4321 tgttttattt atctccttta gatttcacat ttttttggcg aaaattaccc gcttgttaga
     4381 gcgagtaaat cttggcttat tctctaccta gcgttttcca ccaaaagtga tgctcacttt
     4441 atctttatta gtttctgcac tatgcacaat gccgcctaat tcagcagctt gcggaccata
     4501 aaaaccacct tcaaatttgg cattaagatg aacaactgta ccaccagctg tactcttatt
     4561 atcaatatta aagccttttt cacccgtttt tgctgtaccg ctaaaaccat tgcgttcaat
     4621 ctttccatct aatgtcagca tcggatttgt ctctaaacca tcattcgcaa tcaatttacc
     4681 ttcaatcttc ttatcggcaa aattcacatc aaatatagaa cgagtgccat gagctttatc
     4741 acttggcgaa tcaccaccta cacccccatt cttactacga ataattccat cccaagtacc
     4801 agtataacga taaatacgag cctcttttgg taaatcagca actgccgtac gttcacccac
     4861 taagtattga tgcccgtctt tattatcttg gctgtcttgt tcaaatgtgc cgaatttaac
     4921 atagtctaaa ttattacaac agactg
//
LOCUS       DANLUT010000162         4937 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLUT010000162 DANLUT010000000
VERSION     DANLUT010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4937
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(87..872)
                     /gene="znuB"
                     /locus_tag="PXB38_002183"
     CDS             complement(87..872)
                     /gene="znuB"
                     /locus_tag="PXB38_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL5354453.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     LFSIVAVTGGLLLSGWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(959..2296)
                     /locus_tag="PXB38_002184"
     CDS             complement(959..2296)
                     /locus_tag="PXB38_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL5354454.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(2306..2794)
                     /gene="mreD"
                     /locus_tag="PXB38_002185"
     CDS             complement(2306..2794)
                     /gene="mreD"
                     /locus_tag="PXB38_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL5354455.1"
                     /translation="MRTNPIFQILVIISIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(2794..3849)
                     /gene="mreC"
                     /locus_tag="PXB38_002186"
     CDS             complement(2794..3849)
                     /gene="mreC"
                     /locus_tag="PXB38_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL5354456.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(3951..>4937)
                     /locus_tag="PXB38_002187"
     CDS             complement(3951..>4937)
                     /locus_tag="PXB38_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL5354457.1"
                     /translation="LVYVKGQGIVLDEPSVVAVRQDRMGSLKSIAAVGSHAKLMLGRT
                     PKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNNFMRPSPRVLVCVPAGATQVERR
                     AIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMGSMVIDIGGGTTEVAVLSLNGIV
                     YSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERIKQEIASAKIESDDDVKTMEVHG
                     HNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSVLEQCPPELAADIFERGMVLTGG
                     GALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKALEMIDMHGGDVFSIDD"
BASE COUNT         1526 a         1167 c          872 g         1372 t
ORIGIN      
        1 taatagctac atttaaacag attgattaga aaattcaatg ccctttacat aaaaatctta
       61 tgctttattt tcatacatta ttctgtttaa tggtattctt ttttaaatag cgataatagg
      121 aaaatcaagc cggcacaaat gactaccgat ggtcctgccg gagtatcttt ccagccggat
      181 agcaataaac cgccggttac tgcaacaata ctgaataaaa ttgcaatcag caccattttt
      241 tcaggcgttt tagcaaaacg tcttgcagta gcggaaggaa taatcagcag tgaggtaata
      301 attaaagcac cgacaaattt catacttaat gcgatagtta atgcggttaa aatcatcagc
      361 aataaacgta agcgagccac atttaatcct tcaatttgag caagttccgg gctgatggta
      421 atcgacaaca accgcttcca aaacagcatt aaaatcaaac aaattagggt tgctccgatt
      481 ccgataaaca ccacatcaga aaaattaatt gccagtaaat cgccgaataa gtaagacatc
      541 aaatccactc gtacattatc caacaaacta atggtaatta ccccgagaga aaggctagta
      601 tgggcgataa tccccaacac ggtatccacc gaataattgg ttttttgctc caaccaaacc
      661 agcaataatg caagaagaat agtcattcca attacagcaa gatacggatc gagttctaaa
      721 aaaatcccta atgccacgcc gagcaatgca gagtgcgaaa gtgtgtcgcc gaaatacgcc
      781 atttttcgcc acaccacaaa agcccctaga ggtgcggtaa taaaggctaa caaaacaccg
      841 gcaagccaag ccggaaataa aatatcaaac atattggttc tcaaaggcaa gtaaaacaag
      901 cggttatttt ttcggaaaaa tttgcaaatt ttttgctgat ttagaccgct tgtcatattt
      961 atttataacg ttgaatcggg ctggcttgat cctgtgcttt cagccacgcc attttttctt
     1021 taatctgttt ttccattccc cgctcacttg ggaagtagaa ttcggtatct ttcagctcag
     1081 gcgggaaata attctccccg gcggcataag cgtttggctc attgtgggca tagcgatact
     1141 cttcgccata gcctaaagat ttcattaatt gagtgggagc attacgcaaa tgcgccggca
     1201 catcgtagtc ttttgcctct ttagcgaggc gctttgcttc attaaaagct tgatagaccg
     1261 cattgctctt tggggcaact gccaaataaa tgatcgcttg ggcaatcgct ctttcacctt
     1321 cataagcccc cactcgggta aagcaatccc aagccacaat cgcaatttgc attgctcgag
     1381 ggtcggcatt accaatatct tcagaagcaa tcgcaagcag ccttcttgcc acataaagcg
     1441 gatcaccacc ggcggttaaa attcgggcat accagtataa tgctccatca gccgatgagc
     1501 ctcgaatgga tttatgtaac gcagaaatga gatcatagta acgatcaccg cctttatcaa
     1561 aacgagcttg tcgttcgcct aacacttcgg tcagcaaact tttattcagc actttccctt
     1621 tagctgaatc ttgtgccata tctaccatta attccaaaca gttcaaggca aaacgggcat
     1681 caccattaac ataatcagca agcaatgcca gtacatcatc ttcaagtacc aaagtttcat
     1741 tgcctaaacc acgttcggta tcggctatcg ccatttgcaa aatttttaga atttcgaccg
     1801 cttgtaacgg ctttaaaata taaattctgg ctcgggaaag cagtgcgtta tttagctcaa
     1861 aagagggatt ttcggtagtc gcaccaataa aaataatagt gccgtcctca atatgcggta
     1921 aaaacgcatc ttgctggctt ttgttaaagc ggtgaacttc atccacaaaa agcaacgttc
     1981 gtctgccggc ttggcggttt aatttggctt gttcaatcac ctctcggatc tcttttacac
     2041 cgctggtcac agcggaaata cgttcaactt ccgcatcaag atgatgggcg ataatttcag
     2101 ctagggtcgt ttttccggtg ccgggcggtc cccaaaaaat catagaatga ctatgtccgg
     2161 cttcaatcgc tctgcgtaac ggtttgcctt cgccaattaa atgagattgc ccgacatatt
     2221 cagccaagtt tcgaggtcgc attttggctg caagcggtcg aaaatcttca ctaaaatcaa
     2281 aagacaaact actcatttta acctcttaac gtaaccgcag ttggcgacga atatgacgca
     2341 ttaataagaa aatccaagac caaagcacac cactgattac agcacctaac aattcctgtg
     2401 aattaaattc ggcactgtgt aaaatgtatt caatcacgaa aataaagaaa cggatcagca
     2461 caatatatgc cattactaat aggctttgta gccatagcga taagtttcgc agaatcagat
     2521 ggtatttcgc aacaaaataa atcgccaccg ataacactaa ggcgtggatg cctaaaatcg
     2581 agccaagaat cagatcccag acgatgccgg caataaaagc tgtccccaca ctcattttat
     2641 caggtaatgc caatgcccaa taaattaaca ccaaaacgac ccaagtaggg cgtagccctt
     2701 ggaatcctac cggccaaggc ataatctcaa gtacaaaagc aaccacaaaa atcgaaatta
     2761 tcacaaggat ctgaaaaatc gggtttgttc tcattattcc gctccttctt ccgtatgata
     2821 gttttgttca ttttccgctt ctggttgtgc tgccggattc tcatttatct catcattctc
     2881 tatttgttct tcttttgcct ctagctgcac ttcagttttc ttgttagaca tctgttttaa
     2941 acgttcaaat ggattcacgc tattacgtct ttcttcaaca acttcacgta cttgcgctgg
     3001 cgacaagctt tgggagtagt ttttctcttc cgccgtcggc caaagcagta ataagtaacg
     3061 taagcgatca aatgaggcta acggacgagc aacaattctg gcaaattgac ttttggtatc
     3121 attttcaacc gtttctacaa tcgccaccgg atatccctca gggaaacgtc cacctaagcc
     3181 tgaagtcacc agcacatcac cttttaccac atcaatagaa cgaggcaagt tatcaatgac
     3241 caattcatta ttcacccctg taccactggc aatgccacgt acatcattgc gtagcacttg
     3301 aacaggaata gcatgagtaa tatcagagag caataaaaca cggctagatt tttcccctac
     3361 agaaataact tgtccaacaa cacctctttc atcaataata ggttgcccga caaaagcacc
     3421 gtctaaacgc ccttgattaa tcactacttg ctgacgataa gcatccatct cagcagctaa
     3481 tacttcagca atttttttat actcatcttg ccgaagcgga gaactcaata acaatcttaa
     3541 acgctgattt tcaaccttta gctgatcaag caataataaa tcggcacttt tttctcttag
     3601 ctgctctttt aataaattat tctcaagctg taatttatta ttatcaataa aattgccact
     3661 taccccatct aaaattgaac ggggggtatt agcaaaataa tataatccac ttaccgcggt
     3721 ttctaataga ttacgcgctt gaatcattaa agagctacgc ccatcggaaa taatcagcat
     3781 aatagaaaat atcactgcga taatcaggcg catccctaaa gagggagctt tagcaaaaat
     3841 aggtttcatt agagaaatat atgtgaattt attgggaatc tataacgaaa attgacaata
     3901 gaatcaatcc attgccaacc tccatttaaa cagctgctaa gagaaatgta ttaatcatca
     3961 atactaaata catcaccacc gtgcatatcg atcatttcta atgctttacc accaccacga
     4021 gctacacaag ttaatggatc ttctgctact acgacttgca cgccagttga atcagaaagt
     4081 aaacgatcta aattatgtaa taatgcacca cctcctgtta acaccatacc gcgctcaaaa
     4141 atgtctgctg ccaattcagg tgggcattgc tctaagactg atttaactgc ctctacaata
     4201 ccatttaatg gttgttcaat tgcttctaat acatgtcttg agttaagctc gaaagtacga
     4261 ggagcgcctt cagctaaatt gtgtccgtgt acttccattg ttttaacatc atcatcggat
     4321 tcaatcttag cactagcaat ttcttgttta attcgctctg ccgttgcttc accaatagca
     4381 gaaccaaaat gacgacgtac ataagcaata atagcttcat ctaacttatc accaccaata
     4441 cgcacagaag ttgaatacac aatgccgttt aaagaaagca ctgccacttc ggttgtaccg
     4501 ccaccaatgt caattaccat tgatcccatt gcttcgtgaa ccggcaaacc tgcaccgatt
     4561 gcagccgcca ttggctcttc aattaaatag acttcacgcg ctcctgctcc aattgcagat
     4621 tctttaattg cacggcgttc cacttgtgtt gcacctgctg gcacgcacac taatacacga
     4681 gggcttgggc gcataaagtt attactatgt acttgtttaa taaagtgttg caacattttt
     4741 tctgttacaa aaaaatccgc aatgacacca tctttcattg gacgaatcgc cattatgctt
     4801 tttggtgtac ggcctagcat taattttgca tgtgagccta ccgccgcaat actttttagc
     4861 gatcccatac gatcttgacg tacagcaacc actgagggtt catctagcac aataccttga
     4921 cctttaacat aaaccag
//
LOCUS       DANLUT010000163         4680 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLUT010000163 DANLUT010000000
VERSION     DANLUT010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            53..1369
                     /gene="argA"
                     /locus_tag="PXB38_002188"
     CDS             53..1369
                     /gene="argA"
                     /locus_tag="PXB38_002188"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL5354458.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INEISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYALSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLADAQDLPRYKRENYNYQRRSKVLILPLW"
     gene            1423..2310
                     /locus_tag="PXB38_002189"
     CDS             1423..2310
                     /locus_tag="PXB38_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5354459.1"
                     /translation="MKKHQPIKGAMAIITAGVLFACINTLIPKLTSISPIDSSVIALV
                     QYLVAFIFLVPSMNNIGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGI
                     ALLMTSPLFVTIGSGLFLKEKVDKKRWIATAMGFVGAMIILEPWSDYFEMIALLPIAA
                     AFFWAGYSLMVKKLSRYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGF
                     LILLGFFTALAQLAVAKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGA
                     AIIIAATIYITHAETKQSN"
     gene            complement(2390..2881)
                     /gene="ilvN"
                     /locus_tag="PXB38_002190"
     CDS             complement(2390..2881)
                     /gene="ilvN"
                     /locus_tag="PXB38_002190"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL5354460.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(2874..4595)
                     /locus_tag="PXB38_002191"
     CDS             complement(2874..4595)
                     /locus_tag="PXB38_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL5354461.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AECSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKNVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
BASE COUNT         1344 a          961 c          929 g         1446 t
ORIGIN      
        1 gcggattttt ctaaaaaaga taatatgcgt ttatattata aagaggaaat atatgcaaaa
       61 cacagaactc gcattagctc aatggtttag gcaatctaca ccttatgtta atatgcacag
      121 aggcaaaacc tttgtgatta tgcttgatgg cgatgttatc gaaagcccga attttgtcaa
      181 tattatcaat gaaatcagtc tcctgcacag cctgaatatc aaattagtga ttgtatttgg
      241 ggcaagaccg caaattaacc aattgttaaa acaaaatcat attgagccgg agtattacca
      301 caatatccgt gtgactaatc cacaatcgct agaatatgtg aaacaagcgg tagggaaagt
      361 tcattatgat ttctttgccc gcctttcttt gcgtttaccc cattctgaag tgattaatgt
      421 agtcagtggt aatatgattt tagctcagcc gattggcgtg gtggatgggg tagattatgc
      481 actaagcggt aaaatccgtc gtattaatat tgagagcatt aagcagcaac tggcacaaaa
      541 ttcgattgta ttacttggtc cgattgcccc gtctgttacc ggtgaaatgt ttaatctgcc
      601 gtttgaagat attgccacac aggttgcaat taaacttcgt gccgataaat taatcggttt
      661 ttgtgaagag caggggattt tagatgaaaa cggcaagcca attccagatt atcttccgca
      721 agatggcgaa accttgttac agcagttaat cgagcgtggc gaatatcaca ccccgaaagc
      781 tcggtttttg caggcggcga tcacggtatg ccgagaggga gtgaaacgct cgcatttatt
      841 aagctataaa gaagatggtt cattgcttca agagttattc tctcgtgatg gtattggcac
      901 acagttctca atggaaagct cggaacaggt acgtattgct aattccagtg atattccggg
      961 attattggat ttaatccgcc cacttgaaca gcagggcatt ttagtcaaac gctctcgaga
     1021 acaattagaa atggaaatca caaactacac cattattgag cgtgatggtg tggtgattgc
     1081 ttgtgcggca cttaacccgt atccggaaga aaaaatggcg gaaatggcgt gtgtggcggt
     1141 tcaccctgat tatcgtgatt cctcaagagg ggatattcta ctggaaaata ttcaaaaacg
     1201 ggcagtgcaa ctgggaatgg agaaactctt tgtgctgact acaagaacca cacaatggtt
     1261 ccaagagcga ggatttaggc tggcagatgc ccaagattta cctcgctata aacgggaaaa
     1321 ttacaattat caacgtcgtt ctaaagtatt aattttacca ctttggtaaa atattcaatg
     1381 tttttgaccg cttgttacca agagaactat aaaaggagag ctatgaaaaa acatcaaccc
     1441 atcaaagggg ctatggcaat tattaccgca ggtgtattat ttgcctgtat caatacctta
     1501 attcccaaat taacgtccat ttcaccaatt gattcgagtg tgattgcact ggtgcaatat
     1561 ttagtcgcct ttattttcct cgtacccagt atgaataata tcggtttctt ctcttcatta
     1621 aaaaccgagc attttgggca acactgtttt cggatttttc tatctgcgat tggtattcaa
     1681 tgttggacaa tggcactcgc taaccaatta cctatttggc agggcatagc gttattgatg
     1741 acttcgccat tgtttgtgac catcggctcc ggtctgtttt taaaagagaa agtggataaa
     1801 aagcgttgga ttgcaactgc aatggggttt gttggggcaa tgattattct agagccttgg
     1861 agcgattatt ttgaaatgat tgcactgttg ccgattgctg ctgctttttt ctgggcaggt
     1921 tattcgctaa tggtgaaaaa actctctcgc tacgatagcc caactacgat ggtcgcttat
     1981 ctgtttattc taattacgcc ttttaatttg ttgattgcac tcacgaacct tagccctagt
     2041 gggtttagtc tgccttcttg gagcgatttc ggctttttaa tcttactcgg tttctttacg
     2101 gcgttagcac aactggcggt agccaaagcc tacagtgtag cagatgcttc ctacattcag
     2161 ccgtttgatt ttattaaatt gccgctgaat gtattagccg gttggcttgt atttaactgg
     2221 gtgccaccgg gtaaattatg gctaggggca gcgattatta tcgctgcgac catttatatt
     2281 actcacgctg aaactaaaca gagtaattag caacaaattc acgttacata aaaaatccct
     2341 ttatctttaa gataaaggga tttgcaaatt ttaagctaaa attgaccgct tacagagcgt
     2401 tcttatcacc acgagatagg ctaatcacgc cggagcgaac aatctctaca atcgttgttt
     2461 cttctttaac tgcctcaata aatgcattga gcttctcggt agaaccggat aattgaatgg
     2521 tgtaaagttt cggtgttaaa tctacgattt gcccacggta aatatctacc atacgtttca
     2581 gttcatcacg agatgaacct gtagctcgca cttttaccaa taacacttca cgctcaacgt
     2641 gttcataagc acttaagtta ctcactttaa acacatcaat gagtttgtgt agttgctttt
     2701 cgatttgttc taacacctgt tcttcgcctt gcgcgacaat tgtcatacgg gaaaggcttg
     2761 gatcatcagt aggggcaacg gtcaagcttt caatgttaaa accacgctgc gagaaaaggg
     2821 caactacacg agataatgca cctgattcat tttctaataa tacggctaat gttctacgca
     2881 tctgttctct ccgttttact taacatcatt tcattcattg ctcctccacg cacttgcatt
     2941 gggtaaacat gttccgtttc atcgaccaat acatcaacaa atacaagctt atctttaatt
     3001 gagaatgcct cagttaattt tgcctccaat tcagaagggt ggtcgatttg aatcccaacg
     3061 tggccataag cctctgctaa tttagcaaag ttaggtagag aattcatata cacctgtgaa
     3121 tggcggccag agtaaataat atcttgccac tgtttcacca tacctaagaa acggttattt
     3181 aagctgacaa tcacaatcgg tgtgtcgtat tgctttgcgg tggaaagttc ctggatattc
     3241 atttggatac taccatcacc ggttacacaa acaacagtgg catcagggtg ggcaaatttt
     3301 acccccatcg cagcaggtaa gccaaagccc attgtgcctg caccgcctga attaatccaa
     3361 cgacgtggtt tatcgaaccc ataatgcaat gcagcaaaca tttgatgttg tccaacatct
     3421 gaggcaacat aagcctcccc attggtcaac ttgtggatca ttctaatcac ttgttgtggc
     3481 ttaatcacat cactgttttc ttcaaaggct aagcaattac gagctttcca agcatcaatt
     3541 tgttgccacc aagcggttaa atctacctga ttttttgcaa gattttcctc acctaataaa
     3601 gataaaaatt cttccattac attcttagca ctgcctacaa ttggaatata agcttgtact
     3661 gttttggaaa ttgaggctgg atcaatatcc acgtggatca cttttgcatt cgggcaatat
     3721 tttgctaagt tatttgttgt acgatcatca aaacgtaccc caatacctaa aatcaaatca
     3781 ctttcgtgca ttgcattatt tgcctcaaaa gtgccgtgca tgcctaacat acctaaatat
     3841 tgcttatcag aggcaggata agcacctaat cccattaatg aacaggttac aggtagattt
     3901 agcttttgtg caaactctgt aatttctggc gaacactctg cactaattac accaccgcct
     3961 acataaagca ctggacgttt tgctactaat agtgctttta atgctttttt aatttgccct
     4021 ttatgccctt gaactgttgg gttataagaa cgcattgata cttcttgcgg atattcatag
     4081 ggatatttat ttaatggatt gactacatct ttaggaatat caataactac cgggcctggt
     4141 cgaccggttg atgcaatata aaaggctttt ttgataattt caggaatttc ttctgtattt
     4201 tttactaaga aactgtgttt tacaaccgga cgagaaatgc cgatcatatc actttcttgg
     4261 aatgcatctg tcccaattaa acttgatgga acttgacccg acagtattac taacggaaca
     4321 gagtcggtat aagcagttaa aataccagta attgtattcg ttgctcccgg acctgaagtc
     4381 actagcacac agccgacttt acctgttgaa cgggcatagc catcagccat atgtacagca
     4441 ccttgctcgt gtcgaactaa aacgtgattc aatccaagtg tatgaattgc atcataaata
     4501 tcgagtacag agccacccgg atagccgaaa acgtattcta cgccttcatc ctttaaggac
     4561 tgtacaatca tttctgcacc agaaagtttt ttcattgaat cctccaacaa aatagcattt
     4621 tcttctctaa gatggttgga ttttgcagta aaattttatt gatgtctagt tcttattatg
//
LOCUS       DANLUT010000164         4656 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLUT010000164 DANLUT010000000
VERSION     DANLUT010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            193..1416
                     /gene="hflK"
                     /locus_tag="PXB38_002192"
     CDS             193..1416
                     /gene="hflK"
                     /locus_tag="PXB38_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL5354462.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPANNQQNEQ
                     QPPDLEEVFSSLLKKMGGGKGSNNSSNQPTASLGKFLPVVLGLAAIVWAGSGFYTVQE
                     AERGVVTRLGKLDSIVMPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1419..2306
                     /gene="hflC"
                     /locus_tag="PXB38_002193"
     CDS             1419..2306
                     /gene="hflC"
                     /locus_tag="PXB38_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL5354463.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2480..3778
                     /gene="purA"
                     /locus_tag="PXB38_002194"
     CDS             2480..3778
                     /gene="purA"
                     /locus_tag="PXB38_002194"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL5354464.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(3938..4008)
                     /locus_tag="PXB38_002195"
     tRNA            complement(3938..4008)
                     /locus_tag="PXB38_002195"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3978..3980),aa:Arg,seq:tct)
     gene            complement(4372..>4656)
                     /locus_tag="PXB38_002196"
     CDS             complement(4372..>4656)
                     /locus_tag="PXB38_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354465.1"
                     /translation="FNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTNFVI
                     ITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
BASE COUNT         1442 a          842 c         1057 g         1315 t
ORIGIN      
        1 agttatctag gacagcccct aattttaaga gcaatactag ggcgaattta tcgccctatt
       61 tttttgcaaa taaatagtga aaaaagaccg cttgtttcag ataaacctag tcaaaagctt
      121 actaaatagg tacaatcact aacttgcatt ctaagcttta aagtgcgatt cgattttatt
      181 ttggagatat ttatgtcgtg gaatgaatca ggcaatcagc aagatccttg gggtaaaccg
      241 gggcagaaaa aagctgagcc aaagcctgag caacaagaac agggttcaca acaagagccg
      301 gccaataatc aacagaatga acaacagccc cctgatttag aagaagtatt tagcagttta
      361 ttaaaaaaaa tgggtggtgg aaaagggtct aataatagtt caaatcaacc tactgcaagc
      421 ttagggaaat tcctacctgt tgttttaggt cttgctgcaa tcgtttgggc tggttccggt
      481 ttttatactg tacaagaggc tgagcgtgga gtagttactc gtttagggaa actcgatagt
      541 atcgtaatgc ctgggttgaa ctggaagccg acttttattg attctgtcac cagagtaaat
      601 gtggaacgtg tgtcagagct taatacaagc ggttcaatgc tgacacaaga tgaaaatatg
      661 gtgcaggtgg aaatgacggt tcaatatcgt gtggaagatc cggctaaata tttgtttagt
      721 gtaagcaatc ctgatgacag cttaaaacaa gctacagata gtgcattgcg ttatgtgatt
      781 ggtcatatga cgatggacga aattttaact actgggcgtg caaccgtacg cgaaagaacg
      841 tggtccacat tgcgtgatat tatcaaaact tatgatatgg ggttattggt aacagacgta
      901 aacttccaat atgcacgacc gcctgaagag gtgaaagctg cctttgatga tgcaatcaaa
      961 gcacaagaag atgagcaacg cttaattcgt gaagcggaag cctatgcaag aggtgaagag
     1021 ccgattgcac gtggccaggc acagcgtacg attgagcaag ctcaagctta caaagaagca
     1081 gttgtgttaa atgcgaaagg ggaagtggag cgtttgagtc aattattacc tgaatataaa
     1141 gcctctccag agctgactcg tgaacgttta tatatccaga caatggaaaa agtcatgaaa
     1201 aatacgccga aagtggtgat ggattcaagt ggtaataatt tgaatgtatt gcctttcgat
     1261 aagctaatga attcttcatc ggtaataaaa gcggagcagc ctgcggcggc acaagtagtt
     1321 acaccacaag ttgttcagcc gcaagtacag ccaagaacac aaattcagcc gcaacaagca
     1381 gaacaacaag aaccaactcg taaggggaga ttttaatcat gcgtagatta ttagtaccta
     1441 tacttgctgt agttgctttt gttgtgctac aggcaatcac cattgtaaac gagggcgagc
     1501 gtggcattat gttacgtttt aacaaagttc atcgtgatag cgatcaaaaa gtggtggtat
     1561 atgaaccggg gattcacttt aaagtaccat ttatcgatag tttaaaggta ttagatgctc
     1621 gtattcaaac tctagatggg caagaagacc gttttgtaac agtcgagaaa aaagatttat
     1681 tagtggactc ctatgtaaaa tggcgaatca gtgattttgg ccaattttat acctctactg
     1741 ggggggatta ccaaaaagcg gcggatttat tacgccgtaa ggtaggggat cgtctgcgtt
     1801 ccgagattgg ttctcgaacc attaaagata ttgtatccgg ctctcgtggt gagttaatgg
     1861 caggagccca aaaagcgctg aatgccggtg aagatggagc agagcgttta ggaattgaag
     1921 tagttgatgt gcgagtgaag caaatcaact taccaaatga agtttcttct tcaatttacc
     1981 aacgtatgcg tgccgagcgt gatgcggtgg ctcgtgaaca ccgctcacaa ggtaatgaga
     2041 aagcagaggt aattcgtgcc gaagtggata aaaaagtggt gctgattttg gcaaatgcga
     2101 acaaaactgc tcaagccttg cgaggtgaag gtgatgctca agctgcaaaa ctctattcag
     2161 agaaatttgg taacgagccg gaattttaca gttttattcg tagtttaaaa gcctatgaag
     2221 atagctttgc cgaaggtcaa aataatatga tgttattaaa gccaaacagc gaattcttac
     2281 gctttatgca agcaccgaca aaataattgt atctataaaa cccgatcttg tatcgggttt
     2341 ttaattttcg tccctattct gatcatagca agcggtcaat tttggctgat tttttgcaaa
     2401 aaatttgaaa aaattgaccg cttgcgatat gaagttataa tgggtttcgt tattcatcct
     2461 aactaaaaga ggcatttcta tgggtaaaag tgttgctatt cttggcgctc agtggggcga
     2521 tgagggaaaa ggcaaaattg ttgatttatt aacagatcgt gtgaaatatg tagtacgtta
     2581 tcaaggtgga cataatgcag ggcatacctt aatcattaat ggtgaaaaaa ccgttctgcg
     2641 tttaattcca tcgggtattt tgcgtgataa cgtgacttgt ttaatcggta atggtgtagt
     2701 gctttctcca gaggcattaa tgaaagagat gggggagcta gaagaacgag gcattaatgt
     2761 gcgtgagcgt ttaaaaattt ctgaagcttg cccgttaatt ctgccttatc acgttgcgat
     2821 ggatcacgct cgagaagcgg cacttggtaa aaacaaaatc ggtacaacag gacgtggtat
     2881 tggcccagct tatgaagata aagtcgctcg ccgtggttta cgtgtcagcg atttattcga
     2941 caaagaacat tttgccgcaa aattaaaaga tattttagat tactacaact tccaattagt
     3001 caattattac aaagttgaag cggtagatta tcaaaaaacc ttagatgatg tgtttgcgat
     3061 tgcggatgtg attaccggaa tggttgccga tgtgacaact ttacttcacg aagcacgtga
     3121 aaacggcgac aatattttat ttgaaggggc tcaaggcacg atgttagata tcgaccacgg
     3181 tacttacccg ttcgtaacca gctcgaatac gacagcaggc ggtgtggcaa ccggatcagg
     3241 ctacggtcct cgtcatttag attatgtatt agggattatc aaagcctact gtacccgtgt
     3301 aggtagtgga ccgttcacca ccgaactatt tgacgatgta ggtgctgaaa ttgctcgcaa
     3361 aggtaatgag ttcggagcgg taaccggtcg ccctcgccgt tgtggctggt ttgatgccgt
     3421 agccgttcgc cgagcagtgc aaatcaactc catttcaggc ttctgtatga ctaaactcga
     3481 tgttttagac ggattcaaag agctaaaaat ctgcgttgcc tacaaaatgc caaacggaaa
     3541 aattgtcgaa tatgcccctc ttgcagcaaa agactgggaa ggtgttgaac caatttatga
     3601 aacaatgccg ggttggtctg aaaatacttt ccgtgtgaca aaacgtgaag atttaccaca
     3661 agccgcatta gattacatta aacgtatcga agagctggtc ggtgtgccgg tagatattct
     3721 ttctacaggt ccggatcgtg tcgaaacgat gattttgcgt gatccttttg cagcttaata
     3781 aaagataaaa taaagccatt tagtgagata gagctagatg gcttttttgt ttgaaccagt
     3841 aaactttact ttggcacaat tttgtcacaa tacagaaaat agttctttag cgtgagtttt
     3901 taaggctgtg taagtatttg aatttaaaag aatttaatgg cacgccctaa aggattcgaa
     3961 cctttgaccc acgccttaga agggcgatag gtatttcata aaaggcgttt attttagtta
     4021 ataaaaacaa agacttatag agataacccc tccatattac ctaccattat ttcacatctt
     4081 tttacattaa ataacaccat ttacggtaca tttacggaac acgtaatcaa gcactacttt
     4141 tggtgatgag ctagtattca aaatatacca gtccctccta ctataaaact cccatttttt
     4201 gaataaacaa caaggaggcg ggacacgcct ccatcaattc taagcaacta tatacataaa
     4261 atagtatttt ctaagtaaaa tcaataactt acctatttta agctacgcaa atattagcaa
     4321 acaccaacac acatacacaa aaaaatggta gttgctatgg tagttactaa attaaactac
     4381 aatctgcccc gtctctttta agtgcttata gatacgccct aacataatct gcgttggcgt
     4441 tttgccaata tcctcttttg ttagcggtgc atcagtaatc gctttggctg attgagcatc
     4501 aatatatttg tactcacttg tgatgattac aaagtttgtt acctcgccat cggtgtcatc
     4561 gcctgtgcca acgacatatt tggcattaag tgagccgtcg tcttgagttg aatagcttgc
     4621 gatggtggaa tacattgggt ttaagatttt gttaaa
//
LOCUS       DANLUT010000165         4546 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLUT010000165 DANLUT010000000
VERSION     DANLUT010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4546
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            934..4383
                     /locus_tag="PXB38_002197"
     CDS             934..4383
                     /locus_tag="PXB38_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5354466.1"
                     /translation="MTEEKKARVDADKANAERLTDITSRVANAESNITNFQSTKANKS
                     EVASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSRVASSQYGDR
                     RLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRTGLNYVYLIR
                     EDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDWFAFHSVKLE
                     MGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTTRMGAAESNL
                     TRTERAVTELNQTTVTTLRDLTARTKTTEGSLSRLETAKANKTEVASIAQSSLQSIWK
                     ADAKSAVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRLGMLGGAGVA
                     GIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQRLATIPVIA
                     SLLNRPKITFTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTPAPEDV
                     DSAVSAVSAKIDTIQETLANADSALSSRIDTVTASVGSNLAKITQVSNAVAGVDGKLS
                     STHTIKTETIAGGRKAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQPVRLFG
                     VAQNKVAINGDLIATGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKLAIGLG
                     GNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRNIFNRNKQDNYGLKNGGLPNE
                     LVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIENIEKPG
                     GAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGKANPFL
                     FARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITANEIAA
                     GTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTISGGTI
                     SGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSKTYSETKN
                     SFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSKTFYGSGSNRTPTTITLPSV
                     IDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAIISSTNGSS
                     YQL"
BASE COUNT         1459 a          920 c         1034 g         1133 t
ORIGIN      
        1 gaaagtgcga atttaacgaa aaaaattcaa gctgaagcaa ccgctcgtgg ggctgctgtt
       61 acacagttac aaaatgttga tgctcaacaa gcacaactca tttctgctgt cacagcaaaa
      121 gctaataatg ctctatcagg cttggaagag gaaaaaacag cacgagcaaa cggcgataaa
      181 gctgaagctc aagcacgtga agcattaaca gcaagaatgg gagcagctga aagcaatatc
      241 gtaactattc aacgtacggt agcaaataat gcccaaagca ttagtgaagt cagtcagaat
      301 ttaaatgcta agattgataa tatcaatatc ggaggtcgga atttattaag agacagcgag
      361 ttcaatgcgt acaataaatg gggtagccca caaattgaat ttgctgaaaa tgcaaatcgc
      421 cgaactatca aagtaacctc aacaggtact aacggtcctg ttggtatttg ttcatctaat
      481 cgccattcca catcttattt ccaacaagga gaaacttata cactctcatt atttgctcga
      541 ggaagtaagg cactagacta tctctatcta atgcgtcaag atgggaataa cgttagatta
      601 ccagtgatta acgttgcctc tgaaacagag ttcaattatt acaaactgac gttcaaagca
      661 ccgtttacca cacaacaagg ctatttctta gttggttttt tccaatctac tccaaatcaa
      721 tttgttgagt ttcatagttt aaagctagaa aaaggaaacg tagcgacaga ttggacacca
      781 gcaccggaag atgtggacag tgcggttagt gctgtttcgg ctgatttaac gagttataaa
      841 caaactcaag cggctaccga ttcagcacaa gcacagcaac ttaatcagtt atctgtgaac
      901 ttgaccaaag cagagactaa tttcaacgcc aaaatcacgg aagaaaaaaa agctcgtgtt
      961 gatgcagata aagcgaatgc agagaggctc acagacataa caagccgtgt tgcaaatgcg
     1021 gaatcaaata ttaccaattt ccaatcaacc aaagcgaata aaagtgaggt ggcaagtatt
     1081 gcccagcaga acttacagag catttggcgc accgatgcgc aaagtgcggt ggatgccttg
     1141 aaaatcggtg gtgcaaatct actggttgat agtgagtatt tgacgacagc ccgttggggc
     1201 ggtagctcac gagtggcaag ctcgcaatat ggtgatcgtc gcttgactca agtgtttgtg
     1261 acccaagcag gcacagggca ttttggtgtg actcaaggca cacaaaaagc cactacgcgt
     1321 attcgtcagg gtgaaaccta taccttgtca ctaaatgcgc aggggacggc aggttttacc
     1381 cgcacagggt taaactatgt gtaccttatc cgcgaagatg gtggcaattt tagattgcca
     1441 actttgccgc ttactgcatc attgtcccaa cgccctaaag tgacatttac tgcgccgtgg
     1501 acgagcaatc aagttcggtt actgattggc gcaaatggca tatttgaggc gacagactgg
     1561 ttcgcatttc acagcgttaa gctcgaaatg ggtaatgttg ccacaggctg gacaccaacc
     1621 gccaaggata ttgacgacaa agtatcagcg gttcagtcca acctcaccgc ttatcaggcg
     1681 gcacaagcta aagcagatca agccaaagct acgcagattt cggggctcac aacccgaatg
     1741 ggggcagcgg aaagtaacct cactcgcacc gaacgggcag tgacggaact taatcagaca
     1801 acggtgacga cactgcgtga tctaaccgcg cgcaccaaaa caacggaagg ttcgctctct
     1861 cgtttggaaa ccgccaaagc aaataaaact gaggtggcaa gtattgctca aagctcctta
     1921 cagtcaattt ggaaagctga tgcaaaatct gccgttgatt cactttctat cggtgcaagg
     1981 aacttactga tagacagtac ttacaaccaa cacatcaact acaatacaaa aatgtcatca
     2041 atcacacgca cagtctatcg cggcaatatg ttgatacgac tcggaatgct tggtggcgca
     2101 ggtgtggccg gtattgtaca agcaccagcc gctcaagtaa gtaatatcag acagggtcaa
     2161 gagtacacac ttagcctgaa tgtacagggt acagccggca tacaaaaaac ggggctcaac
     2221 tatgtattct tgatgcgtgc tgatggggct aatcaacggt tagcaacaat acctgttata
     2281 gccagcctat taaacagacc taaaataacc tttactgccg aatggacaag tgagcgagcc
     2341 tatctgcttg ttggtgtaaa tggtacttat gagaccacag attggttagc gtttcacagc
     2401 gtcaaacttg aaaaaggcaa cgtagccaca gactggacgc cagcacctga agatgtggac
     2461 agtgcggtta gtgcagtttc ggctaaaatt gatactattc aggagacttt agcgaatgcc
     2521 gactctgcat taagctctcg tattgatacc gttactgctt ctgttggctc aaacttggca
     2581 aaaattactc aagtgagtaa tgctgtagcc ggtgtagatg gtaaattatc gtctactcat
     2641 accatcaaaa ccgaaaccat tgccggtgga cgtaaagcga ttgccggtat cgcacttggt
     2701 gccgcggcag acaatcgcaa tgcagaatcc tctgtcattg taatggcaga caaatttgag
     2761 gtagtaaaaa atgctcaaga cggccaaccg gtacgattgt ttggtgtggc tcaaaataaa
     2821 gttgcgatta atggggattt aattgcaaca ggtacaatta aaggtagcca cattgatgca
     2881 gactcagtaa gagccggaat attgacggcg ggagctatcc gtacggaaca cttggcagca
     2941 gggcaaatat cggcggataa gttagcgatt gggctaggcg ggaatttgct ggttaatcct
     3001 atttttgcaa cacccgattt gtcaatagct ccgtttggct ggaactactg gcgaggagaa
     3061 gttggtgatc ggctaaatat tgacacccgt aatattttca ataggaataa acaagataat
     3121 tacggactaa aaaatggagg actaccaaat gagttagtat tttcgatgcg gtatagcact
     3181 acaaaggaaa cctctgatac tgggcgaatt gggtggttat ctcaggatat taatgttgtg
     3241 cctaataaaa aatatattgc ctccgtatgg ttagcttgtc atcgtgggca agctaaatta
     3301 gtcattgaga atatcgaaaa acctggtggt gcttacttag gtcggatagg caacagcgag
     3361 gtaattactg gctatagtgc tcatcaaggc gaatttaaaa atatgaaacg ggttaaggtt
     3421 gtatttactg cacctacttc aggctgtatt cgtttcgcat tacgattaga taatattcaa
     3481 ggtaaagcta atccattttt atttgctcgt agaccaatgc ttgaggaggc tagtgataat
     3541 gttacagata tcactcagcc tagcccttgg caaaatgccg gtgtaaccgc tatccacggt
     3601 ggctcaatag ttactaatac cgttactgct caacaaattg cagcaaatac cattaccgcc
     3661 aacgaaatcg cagccggcac gattgcagct cgaaatatgg cagcaaactc gattaatgca
     3721 agtcatattg tggggagttc gatcactgcg gataagctaa atgtaaacaa tttagcggca
     3781 atatcggcaa atcttggtaa ggtaactgct ggtacaatta caggtacgac aattagtggt
     3841 gggacaattt caggtacaac aattacaggg ggaataatta aaggagcaag aattgaggga
     3901 ttaacaggta aatttactgg agaacttgaa atcaaccaat tgatcggagg taatatctat
     3961 gaggctaaaa cttggacatc aaaagcaaca gggaaaagta aaacatattc agaaacgaaa
     4021 aacagttttg cattaagtga tacatattat gagtatgtat gtcaatttgt actacctgct
     4081 acaaaagcga cgagaacatt gtatgttgtc cacactccga caggagagag taaaagcaaa
     4141 actttttatg gtagtggtag taatcggaca ccgacaacaa ttacattacc gtctgtaatt
     4201 gatattagca atactatttc acctaatgta tctaacccat ttaatgattc tggggcaata
     4261 ctcattgcta atactcaata tgtagtaacg tgtcgtgcgt ggtgtgcagg gcgtgggaga
     4321 agtgctaaag tgaattttcg agcaattata tcatctacaa atggttcatc ttatcaatta
     4381 taggaggcaa atatgaaaaa aattatacta cttacaacaa ttatggtttc agcttgtaca
     4441 actcaatata agcaagacta tacaacaaaa ccaacctttt gttatcaact agcccctcaa
     4501 gagcaattac cggggaaaaa ctgtattggc tcaggagggc attcag
//
LOCUS       DANLUT010000166         4536 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLUT010000166 DANLUT010000000
VERSION     DANLUT010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            105..1580
                     /gene="rng"
                     /locus_tag="PXB38_002198"
     CDS             105..1580
                     /gene="rng"
                     /locus_tag="PXB38_002198"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL5354467.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            1734..3236
                     /gene="lysS"
                     /locus_tag="PXB38_002199"
     CDS             1734..3236
                     /gene="lysS"
                     /locus_tag="PXB38_002199"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL5354468.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLAMIFANAPSIRDVILFPAMRQK"
     gene            complement(3314..4387)
                     /locus_tag="PXB38_002200"
     CDS             complement(3314..4387)
                     /locus_tag="PXB38_002200"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL5354469.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
BASE COUNT         1364 a          783 c         1032 g         1357 t
ORIGIN      
        1 tgcaaaaaat aatcagaaat tacccgcttg ttcgaactga gtttttgttt tctaagatgt
       61 gaaatgatac actttagata gttttaaaat atagagacag taagatgagt agtacggaat
      121 tattagtgaa tgttacccca agcgaaacaa gggtagcgtt ggtagaaaac ggaatattga
      181 aagaattaca tattgagcgg gaagctaaac gcgggattgt tggtaatatt tataagggaa
      241 gggtgacaag ggtattacca ggtatgcaat ctgcttttgt ggatatcggc ttggagaagg
      301 ctgctttttt gcacgcttct gacatcgttt cgcatacgga atgtgttgat gaaaatgaaa
      361 agaagcaatt tctggttaaa gatatttctg aattggtgcg tgaagggcaa gatatagttg
      421 tacaagtagt gaaagatcca attggtacta aaggagctag gctcactact gatattacgt
      481 taccatctcg ttatttagtg tttatgccag aaaatagcca tgtgggagta tctcagcgga
      541 ttgaaagtga agaagagcgt gctcgtttaa aaagcttggt tgagccttat tgtgatgaac
      601 ttgggggctt tattgtacgt accgctgcag aagaggcaac tgaagaaagt ttaaagcaag
      661 atgttgaatt tttaaaacgg ttgtggcgta aagtattaga acgaaaaggg aaatattccg
      721 caaaatcaat gctttatgga gagcttgcgc ttgctcaaag ggtactgcgt gattttattg
      781 gtacacatat caattcggtt agaatcgatt caaagctaac ttatgagcaa gtgcgagaat
      841 ttttagctga gtttatgcca gaattaacgg attgtgtcac cctctatacc ggtcagcaaa
      901 ctttatttga tgcctatggt gtagaaaagg caatccaaaa ggcattggat aaacgggttg
      961 atttaaaatc ggggggctat ttaattattg agcaaactga ggcgatgacg actattgata
     1021 ttaatactgg tgcttttgtc ggacatcgta accttgcaca tacgattttc aacacaaata
     1081 ttgaagcaat acaggcaatt gcacaccagc tacagttgcg taatttaggt ggtattatca
     1141 ttattgattt tattgatatg caagaggaag aacatcgtga gcgcgtttta caatcgttac
     1201 aagaggcatt aaaaggcgat cgtgttaaaa ccaatgtgaa tggctttact cagcttggct
     1261 tggtggagat gaccagaaaa cgtacaaggg agagtctaga gcgaattctt tgttgcgatt
     1321 gccaagcttg ccaagggcgt ggcacagtga aaactgtaga gacggtttgc tatgaaatta
     1381 tgcgtgaaat tgtgcgtgta catcatttgt ttaagacaga aaatattcac gtttatgcag
     1441 ctaaagatgt tgctgaatat ttaattaacg aggaaagcca cgcattattg gctgagcttc
     1501 aggcgtttat cggtaaaaaa attgagatta aacttgagcc atattatcat caagagcagt
     1561 ttgatgtggt cgtgatgtaa tctattactt ggttgaggct aaatagttag cctcaatatc
     1621 gttagttaca aaaaatttag aaaatctgac cgcttgtttc ctatccaaat tcctcaaaat
     1681 aacgtataat cgtccagttt tatttatcct tttttgaaat ctaaggtaat tcaatgtctg
     1741 aagtagaaaa tcaagaatta gatctaaacg gtgaaatgtt agcccgccgt gaaaaattaa
     1801 acaaaatccg tgagcagggt aacgcatttc caaatacatt ccgtcgtgat gcgttagcca
     1861 aagatctgca cgctcaatat gatgcagtgg aaggtgaaac cttaaaagaa cagaatattc
     1921 aagtgaaagt tgccggtcgt attatgttaa aacgagtaat gggtaaggca tctttcttta
     1981 ccattcaaga tgtgagcggt gcgattcagc tttatgtagc tcgtgataac ttaagtgaca
     2041 gcgtttacga agaaaaagtc agcctttggg atttaggcga cattgtgggc gtcgaaggtg
     2101 cgttatttaa aaccaaaacc ggtgaattaa cggttcgttg ctctgaagtt caacttttaa
     2161 ccaagtcttt acgcccgttg ccggataaac atcacggttt aacggattta gaaactcgtt
     2221 atcgtcagcg ttatttagac ttgatttcta atgaagaatc tcgccgtact tttatgatcc
     2281 gctcgcaagt agtttcaggc attcgcaaat tcttcttaga aagagacttt attgaagttg
     2341 aaacgccaat gttgcaagtg atcccgggcg gtgcggcagc gaaaccgttt atcactcatc
     2401 ataatgcgtt agatgtggat atgtatctgc gtattgctcc agagctttac ttaaaacgtt
     2461 tagttgtggg tggttttgag cgagtatttg agcttaaccg taacttccgt aacgaagggg
     2521 tttcagtacg ccacaatcct gaatttacaa tgattgagta ctaccaagcc tatgcggatt
     2581 atcacgattt aatggataat accgaagaac tgttacgcca attagcctta gatattcttg
     2641 gcacaactga cgtaccttat ggtgattatg tattcgattt cggtaaaccg tttgagcgta
     2701 ttacgatgca cgatgcgatt gtgaaatatg gtaacggcat tcaacgtgaa gatttagaca
     2761 gcttcgagaa aagtgtggaa attgcgaaag gcttaggcat tgaaattcaa aaatcttggg
     2821 gtttaggctc ggtagtcaat gcgatttttg aagaagtggc agaacatcaa ttaattcagc
     2881 caactttctt gatggctcac ccggcagaaa tttcaccatt agctcgtcgt aatgatgaaa
     2941 acccagaggt aactgatcgt tttgagttat ttatcggtgg tcgtgaaatt ggtaatggtt
     3001 tctcagaatt aaacgatgca gaagaccaag cagagcgttt tgatgctcaa gttgcggcga
     3061 aagatgccgg tgatgatgaa gcaatgttta aagatgaaga ctttatcgtg gcattggaac
     3121 acggtctgcc gccaacagcg ggtgaaggtt taggaattga ccgcttagca atgattttcg
     3181 ctaacgcccc atcaatccgt gatgtaattt tattcccagc gatgcgtcag aagtaatcag
     3241 aaatagaaca aaagcacact tcggtgtgct tttttgtatt acaagcggtc aaatttataa
     3301 taaaaaatgc aatttatttt gctaatccgg ctttaatcat cggttcaaaa aagtcataat
     3361 caaccaaaaa ggcatcgtgt ccgaaatcgg agtgaaactc gtggaactcc aaatttacgc
     3421 ctgcctgttc taatttttgt ttgctcttat acacgtcaac ttgcttgaat agttggtcgc
     3481 ttgttaccgc tacaaaagtg tagttggctt taatacgttt tagggcggtt tcttcatttt
     3541 catagccaag agccgggtcg tataaatcta atgctcggag taaacggagg taagtgttgg
     3601 catcgaaacg acctaaaaat ttcgtgcctt gatagcttaa ataggattcc acttggaaat
     3661 gatcgcccca aatttgtcct tgctgtttgg tttctcgtcc aaaggcttta gcaagttgaa
     3721 tatcagtacg gtaagtcagc ataccgagca tacgggcgat ttttaagccg ttatcaggtg
     3781 caatgccatc ataatagttc ccaccgttaa agtgtggatc gttaataata gcttggcgca
     3841 taacgtggtt aaaaccgata gcctcggcac ttagggtaag tgacgaacaa aggtttataa
     3901 tgttgcgaac tttatcaggg taactaatac cccactgtgt tgcttgcatt ccgccgaaag
     3961 atccccctac cactgcgtga agttgaggga tttctaaata gtccaataat gctttttgta
     4021 cattaacaat atcttgcact gtaataattg gaaacaaact accgtaaggt ttattggttt
     4081 tagggttaat cgaagctggg ccggttgtgc ctttacaacc gcctaataca ttactgcaaa
     4141 taaagaaata tttatcggta tcaaacgcaa gccctttgcc gatgaaatct tgccaccagc
     4201 ctttctcggt tggtgagtca tagtaaggct tagcatcacc ggtaagggcg tggcaaagca
     4261 agaccgcatt gcttttctct gcatttaatc tgccgtaagt ctggtaagcc actgtgatag
     4321 gggacagttc gcctcctaat gtgagtggta aaggtacgtc ctcaaaaagg gtaatctgct
     4381 gagccataaa aatcctgttt gcaaaaaatt ctgctttttt gaccgcttgt tgtaatgacc
     4441 gttaaattag cggtgttcat ttcaattgtc aagaattttt agacgtctaa acgtctagat
     4501 ttttaaacgg ctaaaatcaa aattttattg ctgaga
//
LOCUS       DANLUT010000167         4521 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLUT010000167 DANLUT010000000
VERSION     DANLUT010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4521
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            3..888
                     /gene="rarD"
                     /locus_tag="PXB38_002201"
                     /pseudo
     CDS             3..888
                     /gene="rarD"
                     /locus_tag="PXB38_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432044.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
     gene            881..1493
                     /locus_tag="PXB38_002202"
                     /pseudo
     CDS             881..1493
                     /locus_tag="PXB38_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            1505..3703
                     /gene="priA"
                     /locus_tag="PXB38_002203"
     CDS             1505..3703
                     /gene="priA"
                     /locus_tag="PXB38_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL5354470.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQSNYFVVTEQGRKSLIIGENKKAKKQVELLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQILQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(3780..4511)
                     /locus_tag="PXB38_002204"
     CDS             complement(3780..4511)
                     /locus_tag="PXB38_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5354471.1"
                     /translation="MKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLGILIL
                     YIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITGIPLE
                     RMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTTKENA
                     IFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKLNFMH
                     FIPQAGAMNSNMLALKEWIGYWKEK"
BASE COUNT         1248 a          905 c         1001 g         1367 t
ORIGIN      
        1 gcattctttt atctctttca gcctcagtgt tattcggctg tatgtactat ttggcgatct
       61 ttctaaaacc gctggcaggt gtgagcattt tcggcattcg tatgctggtt acgattcctt
      121 ttcttttcct tgctttatac ttatttaaaa aacaaaatga gttttgggta tttcttcaac
      181 gcctaaagca agagccttat ttattgctgg ttattttaat cacggcatct attgtgggcg
      241 ggcagatgtg ggtttttatg ggctcccaat agcggaaaag cgattgaggt ttcaatgggc
      301 tatctattaa tgccgattat tatggtggca tttggcaaag tggtttataa agaaacgctt
      361 tccttgaata aatggttggc gattgtggtt gctttcattg gtgtagcgag taatattttg
      421 tttacgggaa aaatttcgat agcaagttta tttgtttgca caggttaccc aatctatttt
      481 taccttcgcc gaaagtttgg cttaagccat ttacatagct ttgtggtaga aattttatat
      541 ttgctccctg tagcttgtta ttttatctct caaaccgata tgcaatatgt cgaaacacaa
      601 aaccccaata tttactattt tattgcatta ctgggtttaa ttagtggcac tgcacttatc
      661 agctatacgc tagccagcac gattttaccc tttaatttgc ttggtttatt aggctatgtt
      721 gagccactat tgatgttggt ggtgtctttc ttaattggcg aaaggttagc aaatgaatct
      781 tacttgttga tgatttgctt gttgatctcc atttcatttt tagtattaga tggtatgttt
      841 gctcttcgtc agcagcgtaa acgtaaattg agtgtgaata atgagtgata ttgtaaatta
      901 ttggggattt ttgaccgctt gtattctgct aaatcttaca ccgggttcgg atactatcta
      961 tattttaact cgcactattg ctgaggggaa aaagtcgggc ttaatgtctt cattcggcat
     1021 tctagcaggc attttatgcc atattcttgc ggtttcactc gggcttgcag gcattgtggc
     1081 acattcgccc actttattta attttctgaa atacgcaggg gcaatttatc tctgctatct
     1141 cggcattaaa atgtggcgag agccgttggt gttagagaaa atcaatctag acaaacttcc
     1201 tctatggaag atattctgtc aagggttgat taccaatcta ttaaacccga aagtattgct
     1261 ctttttcttg gcgttattgc cgcagtttgt atccagtaat ttggaaaata ccttttatgc
     1321 tgttggggct aacgttttta tccaccagca ttatttgggt aagtatttta gtcttagccg
     1381 ctgcacctgt tgggcgtttt ttacggcata atcaaacctt tggaaattgg ttaaataaaa
     1441 tctgcggctc gatatttatc gggcttgcaa tcaaaattgg tttagagaag tgagattaat
     1501 cagagtggca ctgaatgtgc cgttacatcg ttattttgat tatttgctac ctccggcatt
     1561 caatgcctgc caaggcgggc gggtggttgt gccttttggt cgccagacca aaatcggcat
     1621 tgtggtcgat ttcccgcaaa ctagtgatgt gccaaccgaa aaactcaaac cgattaaagc
     1681 agcgttggat tctagcccga tttttgactc agaaatgtgg caactgctga actgggcggc
     1741 tcgttattac cacgccccga ttggtgaagt gctaaccgga gccttaccga taaaattacg
     1801 caatggcgat tccactgagc gagttcaatc gaattatttt gtggtgacgg agcaagggcg
     1861 gaaatctctg attatcggtg aaaataaaaa agccaaaaag caggtggaac tgttaaccga
     1921 gcttgccgaa tgtgcaaaat attttgaaaa accgaccgct tgtagcccat ctgcttggaa
     1981 aggcttactc gaaaaagggt atatcgagaa aattgatgtg ccgtttatgg cacaagcgtg
     2041 gcaagactca ctaggtgaat ttccgttagt aaatactaac aatcggctga tcttaaataa
     2101 acaacaaacc ttagtggtca gccgtttaaa tgcacaaacc acttttgcga gctttttact
     2161 caatggcgta acaggctcgg gcaaaaccga agtgtatttg cagttaattg aaacggtgct
     2221 taagcgagag gaacaagtgc tgctgcttgt gcctgaaatc gggctaacac cgcaaacggt
     2281 acaacgcttt aaagctcgct ttaacgttga aattgacgta ttgcactcga atatgaacga
     2341 aactgagcgg ttaaatgcgt ggttgcgggc gaaaaatgga gaaagtgcga ttgtaatcgg
     2401 cactcgctct gctttattta cccagtttca aaaattgggc gtgattatct tagatgaaga
     2461 acacgatagc tcgtttaagc aacaagacgg ttggcgttac cacgcacggg atttggcggt
     2521 ggttagggcg aaaaatgcaa atattccgat tgtgctgggc tcggcaacgc caagtcttga
     2581 aagtttgcac aatgtgcaaa acgggaaatt tatcgaactg acactaaccg ctcgggctgg
     2641 caatgcacaa cttgccaatc agcagattat tgatttaaaa acgcaacggg taactgccgg
     2701 tttgtcggag cgcttgcttt caatgatgaa aacccagtta gagcaaggca atcaagtgat
     2761 gctgttttta aatcgccgtg gctttgcccc ggtattactt tgtcacgaat gcggttgggt
     2821 ttgtgagtgc gaggcgtgta ataagccttt tacttaccac caaaagcaaa aagtgttgcg
     2881 ttgccatcat tgtgccaccc aaagggtaat tccccgccaa tgcggacatt gtggttcaac
     2941 ccatttaata actaccggtg tcggcacaga acaacttgag caggtgctaa atcagcaatt
     3001 ccctcattac caagtgactc gtatagacag agattctacc gctcgcaaag gtgcattgga
     3061 aaaccatttg accgctattc gagagggcaa aagccaaatt ttgattggta cgcaaatgtt
     3121 ggcaaaaggg catcatttcc cgaatgtgac gttggtggcg attgttaatg tggattcagc
     3181 gttattttca actgattttc gtgcggaaga aaaattagca cagctttaca tacaggtggc
     3241 aggcagagca gggcgagcgg agaaaaaagg cgaagtggtg ctacaaaccc attaccctga
     3301 tcacccactg cttaaaacct tgctggaaca aggctaccga gcttttgctg atgaggcgtt
     3361 aaaaatgagg caattaatga gtttgccacc attttcctcg caagttttgt tcaaagcgac
     3421 cggcaaagat aatcaacaaa tcttacagct gcttgagcaa ttagcagatt attttagcca
     3481 aaaaatccag caacaaaacg ggcaaggctt ccagctccct ccaccatttt cagccccaat
     3541 ggcgaagaaa gcaggacatt accgctggtt attgctgatt caacaccctc tccgaggagc
     3601 attacaacag ctactcgatg cctttgatca agaaagggaa agtttaaaca ttccgaataa
     3661 tatcaggctg aatatcgaca ttgacccaca agagattagt tagacaagcg gttgtttttg
     3721 actgattttt tgcaaaaaga aggcaggtga aaacctgcct tgctgctatt tatcttcggt
     3781 tatttctctt tccaataacc aatccactct tttaatgcca gcatattgct attcattgca
     3841 ccggcttgcg gaataaagtg cataaagttg agtttgtaat gatcgggcgt atcgccagaa
     3901 ccgacgctgg cagacatcac ctcaaatcct tgttggctaa acagcatttc agcccgtttc
     3961 atatgccatt ggttggtaac aagaatgatt ttatgaatat tctctttttc taaaatctca
     4021 cggctgaaaa tcgcattttc tttggtggtt ttcgccttat tttccagcca tttggtctca
     4081 atattgaaga acattttaaa ttcatctgcc ataacctttg cctcagaagt cccatttggg
     4141 ctgcttccgg tcgctaaaat cggtaagccg gtttctttat gcagataagc ggcataacgc
     4201 attctttcca gcggaatacc ggtaattgcc agtttgccga ataactcttg gctgtctcgt
     4261 agcccgccac ctagcaccac aatcgcttga gcatttttat atttctctat ggtaaatggc
     4321 tctgcttcga ctaatgaatc ccctaatttc tgtgaagtat agggaatgct gaagatatat
     4381 aaaatcagaa tacctaacaa ggcaaagaag taagcagcgt atttatagcc taaagaaaag
     4441 aggattaatg ctaacaacca cagcaaaata atattaaatg gcgggaggat cattgcggtg
     4501 atcagtttaa tgaactcgaa c
//
LOCUS       DANLUT010000168         4520 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLUT010000168 DANLUT010000000
VERSION     DANLUT010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1330)
                     /locus_tag="PXB38_002205"
     CDS             complement(<1..1330)
                     /locus_tag="PXB38_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354472.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVAVKEG
                     DENKVMTAGDVADAINNSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGR
                     DNDGNMTVNTDNVTIVKDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIAN
                     AINNSGFNVTAGDGVDGGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDN
                     VAFNSIDMSNGKPDTTGSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNN
                     AVNVGDVQAATTKVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTS
                     ELTNNPDGKVEEPTEPNALVTAKTVADAINNAGFNIQANGDEKSLVKTGDTVQFLNGK
                     NIEITRDGNITVSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKV"
     gene            complement(1293..1778)
                     /locus_tag="PXB38_002206"
     CDS             complement(1293..1778)
                     /locus_tag="PXB38_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354473.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADSDQEAAELINPGEEVIFAAGDNLKVKRVGTTFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(1851..3971)
                     /locus_tag="PXB38_002207"
     CDS             complement(1851..3971)
                     /locus_tag="PXB38_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354474.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGATANADFSGAMGDKSVANATYSLALGSSANATSTATRGTAIGYN
                     ATVSGVNATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANAALNNSVALGSNST
                     VSNAVAVPSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQNSATSTDAI
                     NGSQLYMAMNATGNLANSTKNILGGNATVNPDGSVTYTNIGGTNKNTIEEALKAVKTE
                     VVAGSNVNITNATGANGQTIYTVNAYNTTASSSSPDYITVTGKAATAANTTNYEIGLT
                     KKAIDDFTKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNST
                     VPENQANDGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVVTVSKGIQ
                     ATAVGHSANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASL
                     AVGANSIASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTEN
                     ATVGGITYNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINDSQLYMAM
                     NATSNLANSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNY
                     VNQGFNIKDNAGETKGTVTPNESV"
     gene            complement(4200..4386)
                     /locus_tag="PXB38_002208"
                     /pseudo
     CDS             complement(4200..4386)
                     /locus_tag="PXB38_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
BASE COUNT         1175 a         1048 c          799 g         1498 t
ORIGIN      
        1 ttactttgac tgcattaccg tctttgtcac caacattgat attaccacca ttgttagtaa
       61 tcttaggacc ttcatttccg aactgtacac tatcaaaatt cacatttttt gcagttgaaa
      121 cagtaatgtt cccatcacgg gtaatctcaa tgtttttacc atttaagaac tgaaccgtat
      181 cacctgtttt caccaggctc ttctcgtcac cgtttgcttg aatgttaaaa cctgcattgt
      241 taattgcatc tgcaacggtt ttagctgtta ctaatgcatt tggttctgta ggctcttcca
      301 ctttaccatc agggttattt gttaactcgc tggtgtttgc cgtgatttcg cccttatcgt
      361 ttaccttaat ggttgtacca tccgtttttg cttcaacggt ataagtggtt gagccgtcat
      421 cgttagtttt agatgttaca gtaacacctt tatcaccttc cactttggtg gttgctgctt
      481 gtacatcacc cacattcaca gcattattca acgtatcacc tgttgcgttg ttaatattat
      541 ccgcaatcgc tttacgctct gcatctgttg gtgctgcttt atctgcaaat gtaccaccca
      601 cgccgctctt cagattagtg attgagcctg ttgtatctgg tttaccattg ctcatatcaa
      661 tgctgttgaa tgcaacatta tctttcgttg tgtaagtgaa tttaccgtca gcttgggtaa
      721 gtgtcatatt tttacccgca tcaaaggtaa ctgtttcact tggcttgatt agctgtgttt
      781 tcttaccttt ggtttcacca ccatcaacac catcacctgc tgttacatta aagcctgaat
      841 tattgattgc attagcaata tcacctgccg tcactaattt cttagcatcg tcacctgtag
      901 gctcagtaac tttaccttca ggagaattat ttaatgttgt ggtattcgct ttaacttcgc
      961 ctgttgtcgg atctttcacg atagtaacgt tgtcagtatt cactgtcata ttaccgtcat
     1021 tatcacgacc gatagattta tccgttgcaa catctaccgt atattcagta ttgcctttat
     1081 catcttcctt tccggcttta acagttacgg ctttagaacc agctactaca gatgaggttt
     1141 tctctgaatt attaattgca tcagccacat cacctgcggt cataactttg ttttcatcgc
     1201 cttctttaac agccacatta ccacgagtta ctgtaggagc acctgctttc gctacatcta
     1261 ccgtatagat tgtttgacca ttatcacctg tttcaggtgc accaacagtt gctaaacctg
     1321 aacctttcac ttcggttttg tgacgctgct gcttgtttta actgacttac attcaccgca
     1381 tcagtatcag cttcacctgc tttcacgcct gtaattttgg ttggattacc atcattacct
     1441 gcaatattaa cattaccatc tttattcgtg attttcgggc cattatcacc aaatgttacg
     1501 ctatcaaatt tcacatcttt cgctgtttcg tacgtgaatg tagtgccaac acgtttaact
     1561 tttaagttat cgcctgctgc aaaaatcact tcttcgcccg gattaatcaa ctctgctgct
     1621 tcttgatcac tatcagcttt attgccacca gattttgcat tccaacctgc tttttgaatc
     1681 gcttcagaaa ctgtttttgt agttgcaact ttatcttctt ctgcaggtgt agttactgca
     1741 cctgttgtgt tatcaaccgt gatagaaccg gtatccacat caaaggttac tttagttacg
     1801 ccatcagctt cttgtgtaac atttgaaact gtacctttac cgtttacaaa ttatacagat
     1861 tcatttgggg tcactgtgcc tttggtttca cctgcattat ctttaatatt gaaaccttgg
     1921 tttacatagt tatttaagtt cgtaattgca tcgccaacat ttgttgcagt attaccatac
     1981 tgagttccag ctgcattcgt tacattatat ttaggctgag tcacagagcc atccggattc
     2041 acaacagaac cgccaccaaa attatttgca gttgaatttg caaggttact ggttgcattc
     2101 attgccatat aaagttgtga atcattaatc gcatcggttg atgtagcaga aatctgaccc
     2161 gctgccacat tttggatttg acgctcttta cctgcagagc ctacagaaac aacatagtta
     2221 gtatctttat ttaccccggc aaagccatta taagtaatac cccctaccgt tgcattttca
     2281 gttggtgttg ctgctcttac gactgattcg ctacccaaag caacagaact attcagagta
     2341 gcttgagctc ccatacctaa tgctgtagca aattgagctg ttgcattagc acgtgtacca
     2401 acagccactg ctgattgtgc tgaggcaatt gaatttgcac ctacggctaa agaggcattt
     2461 gcactcgcat ttgctgcaac accaaaggca gaagcttttt cagccgttgc attagcatta
     2521 gaacctaccg ctgtagcatc acctgctgtc gcatttgttt ggcgaccaag tgcggttgta
     2581 ccattagccg ttgcatttgc tgaatgacca actgccgtag cttgaatacc ttttgaaacc
     2641 gtaacaacac ctaaagataa cgctccgtta ccatttgcat ttgagtttgt gcctaatgct
     2701 actgccgctt gctctccacc tgttgccgtt gcattcgggc cgatcgcaat tgagtttctg
     2761 ctcttcgcgc catcattagc ttgattctca ggtacggttg aattcacaga gaaatattga
     2821 atttggcttg cttgcgcagg aatattgaca gaaagatcat aaataaccgt gccatttgca
     2881 tttctctctg tactttttac agttactgta ccatcgtttg aaacaacagt agcttgggta
     2941 tctttcgtaa agtcatcaat ggctttctta gttaaaccaa tttcatagtt agttgtattc
     3001 gcagcagttg cagctttacc tgttacagta atgtaatcag ggctagaaga acttgccgtg
     3061 gtgttatacg catttactgt ataaatagtt tgtccatttg caccggttgc atttgtaata
     3121 ttaacattgc tacctgcaac aacttctgtt tttaccgctt ttagtgcttc ttcaatcgta
     3181 tttttatttg ttccaccaat attagtgtag gtaacagaac catcaggatt tactgtagca
     3241 ttaccaccta aaatattttt agttgaatta gcaaggttac ctgttgcgtt cattgccata
     3301 taaagctgtg aaccattaat tgcatcggtt gatgtagcag agttctgacc tgccgctacg
     3361 ttttggattt ggcgtttgat cgtgtttgag ccaacagaaa caacattccc tgctgccgta
     3421 gtattagccg caaagccgga ataagtaata ccatttaccg tcgcagaagg aactgccaca
     3481 gcgttggaaa cggttgaatt actccctaaa gcaaccgaat tatttagcgc tgcattagca
     3541 cctgagccta aggcaatagc aaaaccggca cttgctttag cactatcacc aattgcaacc
     3601 gtagattggt tggaagatac tgcacttacc cctaaagctg tcgcattaac acctgaaact
     3661 gtcgcattat aaccaatcgc tgtacctcta gttgcagtag aagttgcatt agcacttgaa
     3721 cctaaagcta aagaataagt agcatttgca acagacttat cccccattgc acctgaaaaa
     3781 tcagcatttg cggttgcacc tgaacccatt gcaaatgaac gagtgccact agcggcagat
     3841 ctccatccca ttactgttga acggttacca gtagctagag ctcctgcacc aaaagctgtt
     3901 gcacggttac ctgttgcagc agtatccgta cctaatgcaa tagcatttgc tgaagtcgct
     3961 ctagccccca taccaatagc aatagaagga actaatgccc aattctgacc agtattattg
     4021 agactctcta caccaatatt atagtaatgt aagaagtatc ttctggatcc actaaatttg
     4081 ttctatgcgt tgcattcgca tctgtaccaa ttgcaatagt agatctgcca gttgagattg
     4141 aatccgcacc aatagcaatt gcgttctccg atgatgcagt tgcttgtgtt gaaatataat
     4201 tacttgttgt tgaacctata gatacaacag ccacagcatc attagctccc aacacggcac
     4261 tagctccagc caataaagcc aatgttgcct tacttgcatc gttttacctt tcgctcgttg
     4321 taattcagat actgcaaccc aactttgtgt tgcctgattc caaataactt taaaaatttg
     4381 attcataatc gaccctatat aaaaataaaa aagattacgt agaacctatg ttcaacataa
     4441 tcttcaccaa tataaaaaac cgccacctat ttaagtgaaa taacttactt atagactcag
     4501 aaatttaagt gcgcgtattt
//
LOCUS       DANLUT010000169         4508 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLUT010000169 DANLUT010000000
VERSION     DANLUT010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4508
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(1..125)
                     /locus_tag="PXB38_002209"
                     /pseudo
     CDS             complement(1..125)
                     /locus_tag="PXB38_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
     gene            complement(131..349)
                     /locus_tag="PXB38_002210"
     CDS             complement(131..349)
                     /locus_tag="PXB38_002210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354475.1"
                     /translation="MKEIKLGVSPLTNEIYAGYVNKKGDLWTEKQDVTMPALLCVVQH
                     CLKFGSPIIISKENGEPEFEITVKDLRK"
     gene            complement(336..839)
                     /locus_tag="PXB38_002211"
     CDS             complement(336..839)
                     /locus_tag="PXB38_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5354476.1"
                     /translation="MNEDEFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFADD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEVEQVIEPPTLLENNG
                     WISVKDRLPEIRKEVLITNNFIMIAQFNGESWFKSGGILGIQPVYGVTHWQPLPEPPK
                     EKANERN"
     gene            complement(949..1752)
                     /locus_tag="PXB38_002212"
     CDS             complement(949..1752)
                     /locus_tag="PXB38_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL5354477.1"
                     /translation="MDKSTIQQISTLAVAATKEVQTDFGTVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     KLAMKKTAAYKALCEINGSRRSQRDFSDFLEDWGDYLTAYHHEDEISIKNAVQAVRKM
                     TIDYARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVQAEQIEEAIATEFAEKLSDALSETSIKVNIGTIEI"
     gene            complement(1822..2181)
                     /locus_tag="PXB38_002213"
     CDS             complement(1822..2181)
                     /locus_tag="PXB38_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354478.1"
                     /translation="MAKTNIPEFLDELDCGIFKDKLATALSEVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(2217..2681)
                     /gene="ssb"
                     /locus_tag="PXB38_002214"
     CDS             complement(2217..2681)
                     /gene="ssb"
                     /locus_tag="PXB38_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5354479.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKIRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSPNGGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDICKQPF"
     gene            complement(2684..2881)
                     /locus_tag="PXB38_002215"
     CDS             complement(2684..2881)
                     /locus_tag="PXB38_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354480.1"
                     /translation="MARKIDAGVEIVEVDKLFIAKFFYDGKLQHTTYPQYSRQNAIML
                     INRKIERFNVGRDKPIKLYKE"
     gene            complement(2865..3050)
                     /locus_tag="PXB38_002216"
     CDS             complement(2865..3050)
                     /locus_tag="PXB38_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354481.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQ
                     VESNGNQYCGGKYGTKN"
     gene            3265..3540
                     /locus_tag="PXB38_002217"
     CDS             3265..3540
                     /locus_tag="PXB38_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354482.1"
                     /translation="MKNNILITYDLNKSGQNYAALIEKIKTLGAWAKVQQSAWYLHTS
                     YSSKEVLEMLSTVTDYNDSLFVAQLSEANWRGLSNEVSKFIQEQWWK"
     gene            complement(3543..3794)
                     /locus_tag="PXB38_002218"
     CDS             complement(3543..3794)
                     /locus_tag="PXB38_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354483.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENGLSDEDKYHIKQA
                     VLKAVENGCLDPEMLASRCCSAIETINKSGINTGNGSCE"
     gene            3952..4173
                     /locus_tag="PXB38_002219"
     CDS             3952..4173
                     /locus_tag="PXB38_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354484.1"
                     /translation="MKKSGADTLALLFARDIAKTSSASTGLPFSYLNKDSADSIADFV
                     ETLSKRFEALDDMVHLPTIINAYKSQSDR"
     gene            complement(4142..4321)
                     /locus_tag="PXB38_002220"
     CDS             complement(4142..4321)
                     /locus_tag="PXB38_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354485.1"
                     /translation="MGNIKDLEVSFKEESLSGSDKNRIKQAILESVARNTDYPPDELA
                     ILACKAICLIDSYKH"
BASE COUNT         1187 a          927 c          851 g         1543 t
ORIGIN      
        1 tcgttatcgg caagttctct tgaaactatt aaaattaact gcattcctga aatatcgcat
       61 aaccctagca catccgtttc aataggtggt aatttgtcct caatggaaat ccagccgttg
      121 ttttctttac tcattttctt aaatccttta cagtaatttc aaattcaggc tcgccatttt
      181 cttttgagat aatgattggg gagccaaact tcaaacagtg ttgaactaca cataatagag
      241 ccggcattgt cacatcttgc ttttcagtcc ataaatcgcc ttttttattg acatagcctg
      301 cataaatttc atttgtgagt ggcgatacgc ctagtttaat ttctttcatt tgctttctct
      361 tttggtggct cgggaagagg ttgccagtgg gtaacaccat agacaggctg aatacctaag
      421 attccacccg acttgaacca gctctcgcca ttgaattgag caatcataat aaaattgttt
      481 gttatcaaga cttctttgcg gatttctggc aatctgtctt tgactgaaat ccagccgttg
      541 ttttctaaaa gtgttggtgg ttcaataact tgttcaactt ccccaaataa ctctgattct
      601 ctttcttcgt cggttagtgg gcggatatct gattttgctc tacctaaaac aacaccataa
      661 actgcatagg gtaaatcata ggcttcatag ctttcgtgat catccatgtc atccgcaaac
      721 tcataggctt cagtagcacc atttaaacag ctttgttttg cttgctctaa ggtttcgtgc
      781 agatttagga tatgtatatc atttgataca tccaccgaaa aaaattcgtc ttcattcatt
      841 ttctttctcc aaaataccaa tagttgagag aataataacc gcttgtattc aacaagcggt
      901 caattttcat taaaaactta caagtaaact tataagctaa cttacaagct agatctcaat
      961 cgtaccaata ttgaccttga ttgatgtttc gctaagtgca tcggatagtt tttccgcaaa
     1021 ctcagtcgca atcgcctctt caatttgctc agcttgaact aagcgggcgg ttaataccgg
     1081 ctcaccgcta ccggttaaca cctgtacacg cagagtaaat gatcgagtgt ctaagccgtt
     1141 atatgggttg caagtaaata caaggtgagt tggtagttgc agtgtagatt tagcttccac
     1201 cgattccatt gctgattttt tggctgcgaa atcgctgagt tcatgttctt cgtttcgggc
     1261 gtagtcaatc gtcattttac gcaccgcttg gacggcattt ttaatactga tttcatcttc
     1321 gtggtggtaa gcggtcaagt agtcgcccca atcttcgagg aaatcagaaa aatcacgctg
     1381 tgagcggcgt gagccattaa tttcgcatag agctttgtag gctgcggttt tcttcattgc
     1441 taatttcgca cgatgttttg cgtgaccggc ttgttctcgg ttgcccatat caaatacaat
     1501 ttccgcactc attttctctt ggtcaataaa gcattgtgcg ttttcttggg cattggcggt
     1561 agcatattca atcaggctac caaaacgttg cgttgaaaac gctgcacgga attgattacg
     1621 gtgagcttgg aaaggctcta aattttgtaa tttaatgcct tcaggtaaca ttactgtgcc
     1681 aaaatcagtt tgaacctctt tagtcgcagc tacagcaaga gtagagattt gttgaatagt
     1741 tgatttatcc attttgagtt cctttttgtt taagtaaaaa taaagccacg cattaacgtg
     1801 gcttggattg aaaataattg attatgcagc agctttagat agagccttta aaccgctagg
     1861 gctttctttt actgctgttt ctgttttttc aggtgtagca gataatgccc cgcctttatg
     1921 aacatacatt ggtgtggcgg tcgtatcttc ttctgctgat ttaccacgct tagttggttt
     1981 aacgtagctc agtttatgct ggatttggac agatgggctg tcgctatcca ttttgtctaa
     2041 gctaaattca accgtgactt tgcctttctt atcgtgagtt agtacgccta acgccacttc
     2101 tgaaagagct gttgccagct tgtctttgaa aataccgcaa tctaattcat ctaagaattc
     2161 aggtatattt gtttttgcca ttttgggttc tcctaattag ggtttgaata aaattattag
     2221 aacggttgtt tacatatatc atcaaaatct cgtgattctg aatccgtcat tacgtggtta
     2281 tatggattgg ttggcggtgg gtttcctgcc ggttcggttg cccaattatt attgctgttg
     2341 cctccatttg ggcttcctag catttgtagc tgatcggcga tgatttcggt cgtccagcgg
     2401 tctgtgccgt cttgggcttg ccatttacgg gtgcgtatct tgccctcaac atagacttgt
     2461 gagccttttt tcaggtattt gccgataatg tcagctaaat tccgaaaggc gataatgcta
     2521 tgccactctg tggcttgttt tttatcgcct gatactttat ccgtccattc ggtcgaagtt
     2581 gccacactga ttttggcgac tgaatcgcca tttggcattg ttcgtagttc cgggtcgtta
     2641 cctaggcgac cgacaataat cactttgtta attcctgcca ttgttattcc ttataaagtt
     2701 taattggttt atctctgcca acgttgaacc gctcaatttt gcgattaatc agcataatgg
     2761 cgttttggcg gctgtattgt ggataggttg tgtgctgtaa tttgccgtca taaaaaaact
     2821 tggcgataaa tagtttatct acctcaacaa tctcaacacc ggcatcaatt tttcgtgcca
     2881 tatttccctc cgcagtattg gttgccgttg ctttccactt gccaaacgcc ttgatttcgt
     2941 tcgcatttgt aacgttgcat ttgtatgtgg tcgtcataat ccattcgccc gacaatgcct
     3001 aatagcaaaa ttagcaaggc aaatggggca agttgtttca ttttgttcat aggattgtcc
     3061 tttagggtta aaaaaagccc acgttttacg gtgggcaaat ggagcgactt gcgtctaggt
     3121 tgtgggtatt ccaaaacaca cttggtgaaa tatgctttgg aataagtgcc tttctttata
     3181 cttgtaaggc tcaagtccct tattgcctct cacaactcta aggaatataa tcaaggctct
     3241 cacaactcaa ataaggatta agttatgaaa aataatattt taattactta tgatttaaat
     3301 aaatcagggc aaaattacgc agcactcatt gaaaaaatta aaactcttgg agcttgggct
     3361 aaagtacagc agtcagcttg gtatcttcat acttcatatt cctcaaaaga ggttttagaa
     3421 atgctaagca ccgtaactga ttacaatgac tctctttttg ttgctcaatt atccgaggct
     3481 aattggagag gattatccaa tgaggttagt aaatttattc aagaacaatg gtggaaatag
     3541 acctattcgc aacttccatt acctgtattt attccgcttt tattgattgt ttcaattgca
     3601 gaacaacatc gtgatgcaag catttctggg tccaagcaac cattttctac agctttaagt
     3661 acagcctgtt tgatatggta tttatcctca tcagacaggc cattctctac aacctttaat
     3721 tccaaatctt tagggcttcc tagttgttca tttaaaataa caactttcgc aatttcaaaa
     3781 tttttgtttt tcataattta cctctagtta aatattccag aacatacttt cttaaatacg
     3841 ctttggaata agtgcctttc tttatacttg taaggctcaa gtcctcttgt gtgcgaccac
     3901 atcgaggagt aaaatgtttt ctgcgaccac aatttaatca aggagaacat tatgaaaaaa
     3961 tcaggcgctg acactcttgc actacttttc gcaagagata ttgctaaaac ctcaagtgct
     4021 tcaacaggat tgccatttag ttacctaaat aaagattccg ctgatagcat tgcagatttt
     4081 gttgaaacgt tatcaaaacg ttttgaagca ttagatgata tggtacattt accaacaatt
     4141 attaatgctt ataagagtca atcagacaga tagctttaca agccaatatt gctaattcgt
     4201 ctggtggata atcagtattt cttgccacac tttctaaaat agcctgtttg attcgatttt
     4261 tatcgctacc agacaggctt tcctctttaa aactcacttc caaatcttta atattcccca
     4321 tttgctcatt caaaagggct aatttggcaa tttcaaaatt tttacttttc ataatttacc
     4381 tctagttaaa tattccaaaa cacactttct caaatgcact ttggaataaa tgcgtgtctg
     4441 cccacgccgt cgcccgtccg gcttttgccg tttccgtcgg gtgctgcttg tatccgtact
     4501 tactcaaa
//
LOCUS       DANLUT010000170         4488 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLUT010000170 DANLUT010000000
VERSION     DANLUT010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4488
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..360
                     /locus_tag="PXB38_002221"
     CDS             <1..360
                     /locus_tag="PXB38_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354486.1"
                     /translation="TIKGRAKMTAKPTPSRLQATIKVNRTHMPMIRILERKSNRLSVS
                     KGSIRVGKHTVQRGFRQRLANGRTHIMFRQGRKRYGIDVAKVPLSQPLTQAFEQELKK
                     YPEQVQAELAKQLAGKL"
     gene            357..749
                     /locus_tag="PXB38_002222"
     CDS             357..749
                     /locus_tag="PXB38_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354487.1"
                     /translation="MKIHTKIRKEVLELLQTKLPDIENFYNGLPTFIDIEEQQLAVSV
                     SLDDISLQEMTVCNDQWSAKLNITIHLKSVENAEDELDEWAEKIREIIDYSDFEYLET
                     ISLSQYQYEQDQNQRTWYTATLIFDVEY"
     gene            777..1418
                     /locus_tag="PXB38_002223"
     CDS             777..1418
                     /locus_tag="PXB38_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354488.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGEQVKLCEEVKWEGKDLPTSYTKAKAALVQFSEQFCA
                     VKNIEKSDDTLNTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQARLRELFFN
                     KSTFAYKLELPDNHGTTYGVGFIESGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            1501..1902
                     /locus_tag="PXB38_002224"
     CDS             1501..1902
                     /locus_tag="PXB38_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354489.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSS"
     gene            1947..2177
                     /locus_tag="PXB38_002225"
     CDS             1947..2177
                     /locus_tag="PXB38_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5354490.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRTAQLAHLTAMINRDPKGK
                     APELAEFMPFFNRSEDVEEMEDNGVADYLAKR"
     gene            2240..2467
                     /locus_tag="PXB38_002226"
     CDS             2240..2467
                     /locus_tag="PXB38_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354491.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVKEMKNNRQI"
     gene            2521..>4488
                     /locus_tag="PXB38_002227"
     CDS             2521..>4488
                     /locus_tag="PXB38_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5354492.1"
                     /translation="MSSSNRLTITLDVENSKLLSGFAQSDTVANKFARSFILNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESEAQQARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDVAKL
                     TETVAKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPSVIQAIAKGLG
                     ITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQNLSTAAEKWVG
                     EMDSTVGASQKAVAVLNALNAHFDTFAKTALVAGGAFVLFKGYMSVRPFIEARAAIYE
                     NRKAIIAENQARQQTIATRQQELVVLSQQTALKLEQTLQTYNQNKAELEAIAVKQQKI
                     TKEREEIAVAIQAAATRTERLALSAELQALDQKEIALGQQKIAVERQQIATKQALKVA
                     YAENAVAQSAMNAGMVTATTTTRAMNGVLAAARAELNLLKAAALSNPLMTLAMVATTA
                     GTALWGFFESQKAAREEALRYADSLDSVRANIEKMTKAQTDAEMVKLSRSIKEQETAL
                     ASLKQRQAELTREIEQGATVLDDAFGAGVRFEKSAKELAKAQEELKLVTADVEKAQNT
                     LNASLEAQEALQAHVPIANLREEFVKLYPHID"
BASE COUNT         1500 a          929 c          961 g         1098 t
ORIGIN      
        1 acaatcaaag gcagagcaaa aatgacggca aaacccacac cgtcccgact gcaagccacg
       61 attaaagtca atcgtaccca tatgccgatg atccgcattt tagagcgaaa atcgaatcgc
      121 ttgtcagtaa gcaaaggcag tattcgggta ggaaaacata cggtgcaacg gggctttcgc
      181 caacggcttg cgaacgggag aacgcacatt atgtttcgtc aaggtcgtaa acgctacggc
      241 attgatgtag caaaagttcc gctatcccaa ccacttacgc aagcatttga gcaagagttg
      301 aaaaaatacc cagaacaagt gcaagctgaa ttagccaagc aactcgcggg gaaattatga
      361 aaatccacac taaaatccga aaagaagtcc ttgaattatt acagaccaaa ttaccggata
      421 ttgagaattt ttataacggg ctgccaactt ttattgatat tgaggagcag caacttgcag
      481 tgtcggtttc tctcgatgac atcagtctgc aagaaatgac tgtttgtaat gatcaatgga
      541 gtgccaagct caacattaca atccatttga aatctgtcga gaatgcagaa gatgaattag
      601 atgagtgggc ggaaaaaatt cgcgaaatta tcgactattc cgactttgag tatttagaga
      661 ccatctcact ctctcaatat cagtatgaac aagaccaaaa ccaaagaaca tggtacacag
      721 cgacgttaat ctttgatgtt gaatattaaa caaacaattt caataggaga attacaatgg
      781 caaaaacgac aaaagtccaa ggtacgaaat ttagaattag cgttggacgt gaggctcaaa
      841 aagcaattac cgcaattaac ttaaatactg ctactctaac gattgcatca tcaggctaca
      901 aaaaaggcga tgccatcgaa attaccggtt gcggtcagtt agacgggatt tatcctgtgc
      961 tgtccgtgac aggcgaacaa gttaaacttt gcgaagaagt aaaatgggaa ggtaaagact
     1021 taccgactag ttatactaaa gcgaaagctg ctttggtaca gttctccgag cagttctgtg
     1081 cggttaaaaa tatcgaaaaa tccgatgaca ccttaaatac agaagatgtt acaacggttt
     1141 gctcggaagg cacagaaact gagccgggtg aaattgagtt tggctcaatt aaattgagct
     1201 ttttccacaa gccaactaca gaaatgcaag cccgcttacg cgaactgttt ttcaacaaat
     1261 ccacctttgc ctataaactg gaattaccgg ataaccacgg cacaacttac ggtgtaggct
     1321 ttatcgaatc cggcaatggt tttagcggtg aagtcaaagg caaatacgaa ggctctgtat
     1381 ctattaagcc aagcaaacgt gactacttgt tagtttaatt gcaagaaatc aaaaaattcg
     1441 accgcttgta gaaataacaa gcggtctttt tatatcagaa ttttacaaaa ggaacgaaca
     1501 atgacactgc gtgagaaact ccttgccaac aaacctaaat tacaacctat cgaaatcaac
     1561 ggtgagacct actacctacg tgaagccact gttggcgata tgaataagca gatttttgaa
     1621 acccgaagct ggctcattca acaagcagaa caagaaaatg ttgaattacc ggcagaagat
     1681 gatgaaacct ttgatgaggc tctcaaccgt tttggcgaaa aataccgcct tgctcaatcg
     1741 gttgcctacc gcttatgtga cgaaaacggt gcattactgt ttaacccact taacattgac
     1801 gatctcaatg cgattgccga attagacagt aaagtgatta tcgactttaa ccaagccgtg
     1861 tccgccccaa aagactcagc gagcgaagaa agttccagct aaccctttcg ctcgcactga
     1921 gcaaaaccct tgaagaaatc gaacaaatgc ccgaacgcca ctttgccgaa tatcaacttt
     1981 tctaccaaga acagcctttc ggcttgtggc gggaagatta ccgcaccgcc caacttgccc
     2041 acttaaccgc aatgatcaac cgtgatccga aaggcaaagc ccctgaactt gcagaattta
     2101 tgccgttttt taatcggagt gaggatgtgg aggaaatgga agataatggt gtggcagatt
     2161 atttggcgaa aaggtaaaga aaacagcttg aaattccttg ctcttggata tatatttcct
     2221 caaagagaag gagggaagta tgtttgaagc actagaccgt tttatgatta atacgattaa
     2281 aattgcaatt attgtatttt tggtcgcttg catctttatt agtatgccga actggtggat
     2341 agcttctatc ttagtacttt tcccgactgc ctatttgctt gataaatact ggtggcgaaa
     2401 taccgaaatg tatcgccgca aaatggataa attagttaaa gagatgaaaa ataatcgtca
     2461 aatctaaatt aacatcaatt ctagcccgct ttatgcgggc tttttatttg gggtgaaaaa
     2521 gtgagtagct caaacagatt aactattacc ttagatgtag aaaattctaa gttactatct
     2581 ggattcgcac aatctgatac agtagcaaat aagtttgctc gtagcttcat tttgaatatg
     2641 gatcaggctc agcaaaaagc acgtcaattt gctgataggt cgacaaaata tctaaaaaat
     2701 attgaacaag cagcaaataa tcttaatagc tctgtatcca aagaacgttt ttggcaaatt
     2761 gcaaatcggt tgcaattccc gacaagtaaa gtgattagtt atgccaatag ctacaccgaa
     2821 ctcggtaata aactcaaatt agtcaccgaa agtgaagccc aacaagcccg agcaatggcg
     2881 gcggtgtatg atatttcgct caaaaccgcc caatctacac aggcaacctc ttcggtttat
     2941 cagacctttg ctcaaaatgc aaaacagctc ggtatttctc aaaacgatgt ggcaaaacta
     3001 acggaaacgg tagccaaatc ggttgctatt tccggtgcaa gttcggcaac cgcttcaaac
     3061 gccctagtgc aattcagcca atcgttgtta atgggtaagc tcaaagccca agaatttaac
     3121 tcattgatga cccaaacacc gtctgttatt caggcgattg ccaaagggtt aggcattacc
     3181 actgccgaac ttaaagcaat ggtggataac ggtgagatgt ctgctgaaaa aatgattgag
     3241 gggctaaaaa aagcagagag ttatgtaaac ggacagtacg ccaaaacaac cactacaatt
     3301 agtggagcaa tgcaaaatct ttcaactgcg gctgaaaagt gggttggcga aatggatagt
     3361 accgttggtg cgtcacagaa agccgttgcc gttctgaatg cgttaaatgc tcattttgat
     3421 acgttcgcta aaacagcact tgtcgcaggt ggtgcatttg tgcttttcaa aggctatatg
     3481 agtgtacgcc catttatcga ggctagagcg gcgatttatg agaatcgaaa agcaattatt
     3541 gcggaaaatc aggctcgcca acaaacgata gctactcgtc agcaggaatt ggttgtactc
     3601 tctcaacaaa ccgccttaaa actggaacaa acattacaaa cctacaatca aaataaagcc
     3661 gaattagagg cgattgcggt taaacagcag aaaatcacaa aagaacgaga agaaattgct
     3721 gttgctattc aagcggcggc aactcgtacg gaaagattag cgttatctgc tgaactgcaa
     3781 gcgctagatc agaaagaaat cgctctcggg caacagaaaa tagcggttga acgccagcaa
     3841 attgcaacaa aacaggctct caaagtggcg tatgctgaaa atgcagttgc tcaaagtgca
     3901 atgaatgcag gtatggtcac tgcaaccaca acaaccagag cgatgaatgg ggttttagcg
     3961 gctgcaagag ctgaattgaa cttactgaaa gcagctgcac tgtctaaccc attaatgact
     4021 cttgcaatgg tggcaacgac tgccggtact gccctttggg gattttttga aagtcaaaaa
     4081 gcagctcgtg aagaagccct ccgctacgcg gacagcttag actccgttcg agccaatatc
     4141 gaaaaaatga ctaaggctca aactgatgca gaaatggtta aattgtctcg ttctatcaaa
     4201 gaacaggaaa cagcattagc tagtctgaaa caacgccaag ctgaacttac acgagaaatc
     4261 gagcaaggag ctacggtttt agatgatgcc tttggtgccg gtgtccgttt cgaaaaaagt
     4321 gcgaaagagt tagcgaaagc acaagaagag ttaaagttag ttactgctga tgttgaaaaa
     4381 gcacaaaata cattaaatgc cagtttagaa gctcaagaag ccttacaagc tcacgttcca
     4441 atcgctaacc tacgagagga atttgtcaaa ttatatcctc acattgac
//
LOCUS       DANLUT010000171         4455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLUT010000171 DANLUT010000000
VERSION     DANLUT010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..276)
                     /locus_tag="PXB38_002228"
     CDS             complement(<1..276)
                     /locus_tag="PXB38_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005640692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354493.1"
                     /translation="MAKQIFKQAPLPFVGQKRMFLAQVSQILNENIPDDGQGWTIIDV
                     FGGSGLLAHTVKHIKPKAHIIYNDYDGYAERLKHIPDTNRLRKQIYDI"
     gene            complement(323..448)
                     /locus_tag="PXB38_002229"
     CDS             complement(323..448)
                     /locus_tag="PXB38_002229"
                     /inference="COORDINATES: protein motif:HMM:NF021626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Com family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5354494.1"
                     /translation="MQSLRLIEIRCKYCQKLLAKAKDVQHLEIKCVRCKSINKFN"
     gene            complement(595..804)
                     /locus_tag="PXB38_002230"
     CDS             complement(595..804)
                     /locus_tag="PXB38_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354495.1"
                     /translation="MFRNELQVMDGKRYVVLECQFRREWKVAIESRGTVTSGEAIEIC
                     QYWIKYKGVKPEQLKVVEVPDILKE"
     gene            complement(825..1313)
                     /locus_tag="PXB38_002231"
     CDS             complement(825..1313)
                     /locus_tag="PXB38_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5354496.1"
                     /translation="MSKEKYFSVDVSNDIHILNLHETLEQAKQSCLNGAAEAYEFASE
                     MDDCENYEANDLPYAVYGVVLGRAKSDIRPLTSEEKESGYFEEVDNFIEQPELVETNG
                     WISVKDKLPEIHEEVLVTNNFIMIAKFNGESWITSGGILGIQPVYDVTHWQPLPEPPR
                     EQ"
     gene            complement(1323..1757)
                     /locus_tag="PXB38_002232"
     CDS             complement(1323..1757)
                     /locus_tag="PXB38_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354497.1"
                     /translation="MKTTQHILDEREQQHGNYNSFAKIYGGLRKVSDPHAEKLTWRQQ
                     ISVEMILFKLARILNNGSNHQDSWQDIAGYALLGGDIYTPQSSDNTNTKGLPKPLTDS
                     IYPESHLDKNAVWRLDLEFETKEQAVAVLEAVTGKKYSENIT"
     gene            complement(1851..2654)
                     /locus_tag="PXB38_002233"
     CDS             complement(1851..2654)
                     /locus_tag="PXB38_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL5354498.1"
                     /translation="MDKTTLQQISALAVAATKELETDFGAVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     NLVMKKTAAYKALCEINGSRRSQRDFSDFLEDWGIYLNAYHHEDEISIKNAVQAVRKM
                     TIDHARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVHAEQIEESIATEFAEKLADALSETSIKVNIGTIAI"
     gene            complement(2726..3085)
                     /locus_tag="PXB38_002234"
     CDS             complement(2726..3085)
                     /locus_tag="PXB38_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354499.1"
                     /translation="MAKTNVPEFLDELDCGIFKDKLATALSDVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(3121..3579)
                     /gene="ssb"
                     /locus_tag="PXB38_002235"
     CDS             complement(3121..3579)
                     /gene="ssb"
                     /locus_tag="PXB38_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5354500.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF"
     gene            complement(3585..3749)
                     /locus_tag="PXB38_002236"
     CDS             complement(3585..3749)
                     /locus_tag="PXB38_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354501.1"
                     /translation="MTRNIETGVEIVAVGKLQHSTYPQYSRQNAIMLINRKIERFNVG
                     RDKPISLYKE"
     gene            complement(3733..3918)
                     /locus_tag="PXB38_002237"
     CDS             complement(3733..3918)
                     /locus_tag="PXB38_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354502.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQ
                     VESNGNQYCGGKYDTKY"
     gene            4111..4434
                     /locus_tag="PXB38_002238"
     CDS             4111..4434
                     /locus_tag="PXB38_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005715000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354503.1"
                     /translation="MWEVLIPSIFSIIKEHFDNIVMRITTWFLSFIICWLYIPIDIQD
                     HLLANALPGLPTYTLLYIFYLVAATAFWQMFILCLDVFALIINKIIKSPAMDQQTNRV
                     DVDNK"
BASE COUNT         1146 a          932 c          852 g         1525 t
ORIGIN      
        1 aatgtcataa atttgcttgc gtagcctatt tgtatcggga atatgcttta gccgctccgc
       61 atatccatca taatcattgt agatgatgtg agcttttggt ttgatatgtt tgacagtatg
      121 agctaataac ccactaccac caaatacatc tatgattgtc caaccttggc cgtcatcagg
      181 aatattctca tttaaaattt gagaaacctg agctagaaac attcgtttct gacctacaaa
      241 cggaagtggg gcttgtttaa agatttgctt tgccatagtt ctcctatggc gttcaggcgt
      301 tcttaacgct cagacactca attcagttaa atttattgat tgatttacaa cgtacacatt
      361 taatttctaa atgttgtaca tctttcgctt ttgccaataa tttttggcaa tacttacagc
      421 ggatctcaat taatcttaat gattgcatat aaatacactt ttacttcatt ttttgataaa
      481 attccgccta cctagctagg tggcggcgta tggctatatg caagtgtgct ttgcgtagct
      541 ggcattataa gtgttgctgc acttataatg tcgccgttct taactaactt atgcctattc
      601 cttcaaaata tcaggcactt caacaacttt aagctgctca ggttttacac ctttatactt
      661 gatccaatac tgacaaattt cgatagcttc gccactcgtt acagtacctc tagactctat
      721 tgcaactttc cattcgcggc gaaattggca ttcaagcacg acataacgtt taccgtccat
      781 tacttggagt tcatttctaa acatatctaa aaccttacag gattttattg ttcccttggt
      841 ggttcaggaa gtggttgcca atgagtaaca tcgtaaacag gctgaatacc taagatacct
      901 cccgatgtaa tccagctttc gccattaaac ttagctatca taataaagtt gtttgttacc
      961 aacacttctt cgtggatttc tggcaatttg tctttaaccg aaatccagcc attagtttct
     1021 acaagttctg gttgttcaat aaaattgtca acctcttcaa agtacccaga ttccttttct
     1081 tcacttgtaa gcgggcgaat atctgatttt gctctaccta aaacaacgcc ataaactgca
     1141 tatggtaaat cattggcttc atagttttcg caatcatcca tttcactggc aaactcatag
     1201 gcttcagcag caccatttaa acagctttgt tttgcttgct ctaaggtttc gtgcagattt
     1261 aggatatgta tatcatttga tacatcaact gaaaaatatt tttctttgct cataaattcc
     1321 ccctaagtta tattttcact atatttcttg cctgttacgg cttccaatac cgccaccgct
     1381 tgctctttcg tttcaaactc caaatccagc cgccatactg catttttatc aagatgtgat
     1441 tcgggataaa tgctatctgt taatggtttt ggtaagcctt tggtattggt attgtctgat
     1501 gattgcggag tataaatatc gccgcctaat agggcatatc cggcaatatc ttgccagcta
     1561 tcttggtggt ttgagccgtt attcaaaata cgagccagtt taaacagtat catttcaacc
     1621 gagatttgct gccgccaagt aagtttctct gcgtgcgggt cgcttacttt gcgtaaacca
     1681 ccataaatct tggcgaaact gttgtagttg ccgtgttgtt gttcacgttc atctaaaata
     1741 tgttgggttg ttttcatcgt gaattttcct cgagaaataa ccgcttgtat tcaacaagcg
     1801 gtcaattttc attaaaaact tacaagtaaa cttataagct aacttacaag ctagatcgca
     1861 atcgtaccga tattgacctt gattgatgtt tcgctaagtg catcggctag cttttccgca
     1921 aactcagtcg caatagactc ttcaatttgc tcagcatgaa ctaagcgggc agttagtaca
     1981 ggttcaccgc taccggttag cacctgtaca cgcagagtaa atgatcgagt gtctaagcca
     2041 ttgtatggat tgcaagtaaa tacaaggtga gttggcagtt gcagtgtaga tttagcttct
     2101 accgattcca tcgctgattt tttggctgcg aaatcgctga gttcatgttc ttcatttcgg
     2161 gcgtggtcaa tcgtcatttt acgcaccgct tggacggcat ttttaatact gatttcatct
     2221 tcgtggtggt aagcgttcaa gtagatgccc caatcttcga ggaaatcaga aaaatcacgc
     2281 tgtgagcgac gtgagccatt aatttcgcat agagctttgt atgctgcggt tttcttcatc
     2341 accaaattag cacgatgttt agcgtgacct gcttgttctc ggttgcccat atcaaataca
     2401 atttccgcac tcattttctc ttggtcgata aagcattgag cattttcttg agcattggcg
     2461 gtagcatatt caatcaggct accaaaacgt tgcgttgaaa acgctgcacg gaattggtta
     2521 cggtgagctt ggaaaggctc taaattttgt aatttaatgc cttctggtag cattactgca
     2581 ccaaaatcag tttcaagttc tttggttgca gcaacagcaa gagccgaaat ttgttgaagt
     2641 gtcgttttgt ccattttaag ttcctttttg tttgagtaaa aaaataaagc cacgcattaa
     2701 cgtggcttgg attgaaaata attgattatg cagcagcttt agatagagcc tttaaaccgc
     2761 tagggctttc ttttactgcc gtttctgttt tttcaggtgt agcagataat gccccacctt
     2821 tatgaacata cattggcgtg gcggttgtat cctcttctgc tgatttacca cgcttggtcg
     2881 gtttgacata gctcaatttg tgctgaattt gaacagatgg gctgtcgcta tccattttgt
     2941 ctaagctaaa ttcaaccgtt accttaccct ttttatcgtg ggttagtaca cctaacgcca
     3001 catctgaaag agctgttgcg agcttgtctt tgaaaatacc gcaatctaat tcatctaaaa
     3061 attcaggtac gtttgttttt gccatttttg gttctcctaa ttagggtttg aataaaatta
     3121 ttagaacgga atatcatcat caaaatctcg tgattctgaa tccgtcatta cgtggttata
     3181 tggattggtt ggcggtgggt ttcctgccgg ttcggttgcc caattattat tgctgtttcc
     3241 gctgtttgag ctaccgagca tttgtagctg atcggcgatg atttcggtcg tccagcggtc
     3301 tgtgccgtct tgggcttgcc atttgcgagt gcgtagtttg ccctcaacat agacttgtga
     3361 gccttttttc aggtatttgc caataatgtc agctaaattc cgaaaggcga taatgctatg
     3421 ccattctgtg gcttgttttt tatcgcctga tactttatcc gtccattcgg tcgaagttgc
     3481 cacactgatt ttggcgactg aatcgccatt tggcattgtt cgtagttccg ggtcgttacc
     3541 taggcgaccg acaataatca ctttgttaat tcctgccatt tttattactc cttataaagt
     3601 gaaatcggtt tatctctgcc aacgttgaac cgctcaattt tgcggttaat caacataatt
     3661 gcgttttggc ggctgtattg tggataggtt gaatgctgca atttgccgac cgccacaatc
     3721 tctacgcctg tttcaatatt tcgtgtcata tttgcctccg cagtattgat tgccgttgct
     3781 ttccacttgc caaacgcctt gatttcgttc gcatttgtaa cgttgcattt gtatgtggtc
     3841 gtcataatcc attcgcccga caatgcctaa tagcaaaatt agcaaggcaa atggggcaag
     3901 ttgtttcatt ttgttcatag gattgtcctt tcgggtaaaa aaagcccacg ttttacggtg
     3961 ggcaaatgga gcgacttacg tctagattgt agtaaacagt gtccgtgatt ttatacttgc
     4021 cacggacagc aagccctgct tgtctctcac cactcgcagg aatataatta aagacctctc
     4081 ctctcatcac taaaaatcag gaactttaca atgtgggaag tattgatacc ctctatcttt
     4141 tctataataa aagaacactt tgataacata gttatgcgta ttacaacttg gtttctgtcc
     4201 tttattatct gttggctata tataccaata gatatacaag atcatttact ggctaatgcc
     4261 ctaccaggac tacctactta tacattgctc tatatttttt atttggtcgc tgctacagct
     4321 ttttggcaaa tgtttatcct ttgcttggat gtctttgcat tgataattaa taaaattatt
     4381 aaaagcccag ctatggatca acaaaccaat agggttgacg ttgataataa ataaaattaa
     4441 taagcattgt tttac
//
LOCUS       DANLUT010000172         4374 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLUT010000172 DANLUT010000000
VERSION     DANLUT010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4374
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            99..1517
                     /gene="leuC"
                     /locus_tag="PXB38_002239"
     CDS             99..1517
                     /gene="leuC"
                     /locus_tag="PXB38_002239"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL5354504.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKTDEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1530..2132
                     /gene="leuD"
                     /locus_tag="PXB38_002240"
     CDS             1530..2132
                     /gene="leuD"
                     /locus_tag="PXB38_002240"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL5354505.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2204..2668)
                     /locus_tag="PXB38_002241"
     CDS             complement(2204..2668)
                     /locus_tag="PXB38_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354506.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2692..3198)
                     /locus_tag="PXB38_002242"
     CDS             complement(2692..3198)
                     /locus_tag="PXB38_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354507.1"
                     /translation="MADPHIQSPMDFWDCLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSAWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3221..4198)
                     /gene="dusA"
                     /locus_tag="PXB38_002243"
     CDS             complement(3221..4198)
                     /gene="dusA"
                     /locus_tag="PXB38_002243"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL5354508.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKPGAGVEVVEQALAFIG"
BASE COUNT         1357 a          966 c          903 g         1148 t
ORIGIN      
        1 ttatattcac tccatatcag caagcggtca tttttgcaaa attttttaca aatttaaccg
       61 cttgtattaa aagttaccct tttgagttgg aacattttat gcaacaagcc aaaaccctat
      121 atcaaaaact attcgactca cacgttgtgt atgaagccga aggcgaaacg ccgattattt
      181 atattaaccg ccacttaatt cacgaagtta ccagcccgca agcgtttgac ggcttgcgtg
      241 ttgccggtcg ccaagttcgc caagtcagta aaaccttcgg cacaatggac cacagtattt
      301 caacccaagt gcgtgatgta cagcaacttg aagggcaagc gaaaattcaa gtattagaat
      361 tagaaaaaaa ctgcgaagaa accggtatcc cactgtttga catcactaaa aaacaacaag
      421 gtatcgttca cgtaatgggg ccggagcaag gcttaacttt acccggtatg accattgtat
      481 gtggtgactc gcacaccgcc actcacgggg cctttggtgc gttagccttc ggtatcggta
      541 cttccgaagt ggaacacgtt ttagccaccc aaaccttaaa acaggcccgt gcaaaaagta
      601 tgaaagtgga agtccgtggc aaagtaaacc cgggcattac cgcaaaagat attgtgcttg
      661 cgatcatcgg taaaacaact atggctggcg gtacaggcta tgtagtggaa ttttgtggcg
      721 aagcaattcg tgatctttca atggaagggc gaatgacagt gtgtaatatg gcgattgagt
      781 ttggtgcgaa agccggtatt gttgccccgg atgaaaccac gttcgcttac ttgaaagacc
      841 gcccaaatgc accaaaaggt caagattggg aagatgccat tgaatattgg aaaaccctca
      901 aaaccgatga gggtgcagtt tacgatgcgg aagtgatctt agaagcaaaa gacattgctc
      961 cacaagtgac ttggggaacc aacccggggc aggtgatcgg tattgatgat gtaattccaa
     1021 atccggaaga tatggccgat cctgttactc gtgcctctgc ggaaaaagcc ttagcttaca
     1081 tcggcttaga agcccataca gatatgaaag atgtaccggt tgatcaagtc tttattggtt
     1141 cttgtactaa tgctcgtatt gaagatttgc gtgctgcggc agcagtaatg aaagggcgta
     1201 aaaaagccga caatgtaaaa cgtattctcg ttgtgccagg ttcaggtttg gtaaaagagc
     1261 aagcagaaaa agagggcttg gataaaatct tcattgaagc cggtgcagaa tggcgtaacc
     1321 cgggttgctc aatgtgtttg ggaatgaacg atgaccgctt gggcgaatgg gaacgttgtg
     1381 cctctacgtc taaccgtaac tttgagggca gacaaggacg taacggtcgt acccacttag
     1441 tcagcccggc aatggcggct gcggcggcgg tgttcggtaa atttatggat attcgcaaag
     1501 tgtcattaaa cgcataatag gaggaaaaaa tggcaggtat taaacaacat tcaggcttgg
     1561 tcgttcctct tgatgcagcg aacgtagaca ccgacgcaat cattccaaaa caatttttgc
     1621 aagccattac tcgagtcggc tttggtaagc accttttcca cgaatggcgt tatttagatg
     1681 cggaagagac tcaaatcaac cccgatttcg tactgaactt cccacaatat caaggtgcaa
     1741 ccattttact cgcccgtaaa aatttaggct gtggctcttc tcgtgagcac gccccttggg
     1801 cattggcaga ttacggtttt aaagtaatga tcgccccaag ttttgcggat attttctaca
     1861 ataacagctt aaataaccat atgttgccga ttaaattaac cgaagaggaa gtcgaagaga
     1921 tcttccaatg ggtgtgggca aatgaaggaa aacagatcca cgttgattta gaagcgatga
     1981 ctgtgactgt tggcgagaaa gtttatacct ttgagttaga cgaattccgc cgccactgct
     2041 tattaaacgg tttggataat atcggcttaa ccctacaaca cgaagctgcg attgctgctt
     2101 atgagaaaaa cattccggca tttttacgct aattaaaata caaaaaaacg gctaacatct
     2161 ttaaggcgtt agtcgttttc tttttagcca ttttctttgg caattagcct tctcggcact
     2221 ctaaccaagg cacattattt ttgtaataag ttgaagtaaa ctctcgtgcc actaactcta
     2281 caaaactgcc ttcaatcggc tgataagaac gataacgcac ttcaaatttt gttgctcttg
     2341 cattcaaact gatgttggca agatggtcga acggataaac ctttccgcca tcaagttgaa
     2401 aatagatacc aaaattctct tgcttacggc tttcagacca aagtggaaaa taggttgcca
     2461 aatatgaact gctgcctgtt gcaaaattct tacaataata gctataacgc ttaaaatctt
     2521 tcggattatt caattccgct tggctgatat tctgtttcaa atatccaacc tgtgcttgtt
     2581 gcttagttga gtttgattgt ggtgagggcg tacaagcaaa taagccaatt gccactgttg
     2641 ccattaaagc aattttgaat ttattcataa aaatcccgat aaaatattaa attaaatctg
     2701 atatttgctt ttatcgccaa tatcaaaatg cagcggcatt cgccattttt gaatactcag
     2761 cacaagaagc aacaagccac agacaaggct taaaatttgc accaataaag accattctag
     2821 tgcaaaagca atccacaata ccgccactaa aagcggttgg aaatttaagc cgaatactct
     2881 aaaacagaaa tattctttat agcttaatcc gccgatcacc agtagcattg ccccgaacgc
     2941 aagcaaaggg aaattaaaca cagcaccaag taagccaatc caagcagaaa attggaaaat
     3001 caggcgaaac gatttggcat aaagatgcaa agaagatgcc aacattgtgc cagatactaa
     3061 taaaccatat tgtgccgttt gcggataata aggcaataaa agcaacatca atgtagctaa
     3121 cacaaaaccg ctgcggtaaa tgatgacggt taaacaatcc caaaaatcca ttggcgattg
     3181 aatatgtgga tctgccataa ctgcctcctt aaacaataaa ttagccaata aacgcaaggg
     3241 cttgttccac tacttctaca ccggctcccg gcttagtggc attttcactt aaatgacgac
     3301 gccactgcct cgctcctttg caatgttgaa acgcaccaag catatggcga acgatatgat
     3361 ttaaatagac acctttggca agctcacgtt caatataagg gaacatcttt tccaccgctt
     3421 cttttgccgt tacaagcggc cgattttcat taaaaatttg cgaatcgatc tcgcctagca
     3481 ttgacgggtt ttgataggcc tcacgcccta ccattacccc atcaacaaac tgcaaatgct
     3541 gtttaatttc ctcaatggtt ttaatgccgc cattgatgct aatctttaaa tgcggaaaat
     3601 ctcgcttgag ctgataaacc cgatcataat ctaaaggcgg aatttcacgg ttttccttcg
     3661 ggcttaaccc tgtcagccac gccttgcggg cgtgtacgat aaaatcattg ctataaggtt
     3721 gcactttttc gataaaatca cacaaaaatt catagctgtc taaatcatca atcccaatac
     3781 gatgtttaac cgtgaccgga atttccaccg catcttgcat tgctttaata caatccgcca
     3841 ctaaatctgc ttttgccatc aaacaagccc caaacatacc gttttgcact cggtctgacg
     3901 ggcaaccgac atttagatta atctcggcat agcctcgctc tgccaccaat ttggcacaat
     3961 gagccaactg tgccgggtcg cttccaccca gttgcaaagc caccggattc tcgctcggat
     4021 catattccaa caaatcatat ttggcgtgaa taatcgccgg ggcggtgatc atttcggtat
     4081 aaagcaaggc ttgacgacta aattggcgat gaaaatagcg gcagtgacgg gttgtccaat
     4141 ctaacattgg agcaaccgaa aaacgtccac ggtaaaaagg ttgaatttcg ttagtcataa
     4201 aaatatcaaa ataaagcggt aaaaaatcag taaaaaataa ccgcttgtaa gcgattcaaa
     4261 acaagcagcc atcatactcg aaaaagccag ataaacatag tttcctcaag gcttccccat
     4321 ctatctgtgc acttttaaaa caaccttaaa acacaatata tagtgtttca acat
//
LOCUS       DANLUT010000173         4252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLUT010000173 DANLUT010000000
VERSION     DANLUT010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            74..1282
                     /locus_tag="PXB38_002244"
     CDS             74..1282
                     /locus_tag="PXB38_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL5354509.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGATHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1335..3470
                     /gene="pta"
                     /locus_tag="PXB38_002245"
     CDS             1335..3470
                     /gene="pta"
                     /locus_tag="PXB38_002245"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL5354510.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3584..>4252
                     /gene="can"
                     /locus_tag="PXB38_002246"
     CDS             3584..>4252
                     /gene="can"
                     /locus_tag="PXB38_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL5354511.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEDRSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLN"
BASE COUNT         1330 a          795 c          863 g         1264 t
ORIGIN      
        1 ctttacacct taaatacacc aataaaaata gtattttctt caaactcatt tcataaaata
       61 aggtaatttg accatgtcta aaaacttaat cttaatcctt aactgcggta gttcatctct
      121 taaatttgct attttagatc ctaaaacagg tgatgaaaaa ttatctggac ttgctgaagc
      181 ttttcattta gaagatgcac gtatcaagtg gaagttaaac ggggagaaag gtaatgctga
      241 tttaggtgca ggtgccacac atagtgaagc acttaccttt attgctgaaa aattgttatc
      301 tgacgaatta aaagcaggta tcggcgcgat tggtcatcgt attgttcatg gcggtgaaaa
      361 attcacctca tcagttgtaa ttaccgatga agtgattaaa ggtattgaag atgcaacgca
      421 atttgcacca ttacacaacc ctgcgcattt aattggtatt aaagaagcat tccgcatttt
      481 ccctgaatta aaagacaaaa acgtagctgt atttgacact gcattccatc agacaatgcc
      541 ggaacacgca ttcttatatg cacttccata tacattctat aaagaaaatg gtattcgtcg
      601 ctacggtttc catggcacaa gccacttcta tatcacctca caagttgcag aattagcagg
      661 taagtctgtt gagcaaacca atgccattat ttgccactta ggtaacggtg gttctgtttc
      721 tgttgtacgc aatggtaaat gtattgatac ctcaatgggt ttaactccat tagaaggttt
      781 agtaatgggt actcgctctg gtgacttaga ccctgcgatt atctctttct tatacaataa
      841 cttaggtatg tcaatggacg aaattgatac tactctagta aaaaaatctg gtcttttagg
      901 tttaactggc gtaactagtg actgtcgtta tgcggaagat aattacaatg acgtatcaaa
      961 accggaagca aaacgtgctt tagatgtata tagctatcgt ttagctaaat atattggttc
     1021 atatatggca attttaggcg atgaccactt agatgctatc gcatttacag gtggtatcgg
     1081 tgaaaattca ggcttagtac gtgaattaac cttaaatcac ttaaaattat ttggcattaa
     1141 gttagatcaa gagcgtaacc ttgctgcccg ttttggtaaa gatggagtca ttacagcgga
     1201 cgagtcaaca tttaaagctg ttgttatccc aactaatgaa gaactcgtga ttgcacaaga
     1261 taccgctaaa ttagcattat aatcataggg ggcagatatt ctgccctttc actttctttt
     1321 aatttggaaa tattatgtct agaacgatca ttcttatccc tatttcaact ggtgttggtt
     1381 taaccagtgt tagcttaggt ttagtacatg ctttggagca aaaaggttct aaagtaggat
     1441 ttttaaaacc gatttctcaa cctatcagcg gtgaagatac gttagaccgc tcaacaacga
     1501 ttatcagagc agaacaaaca acagaggttg gtgagccgtt tatgttaagc gaagctgaaa
     1561 cattaatcgg tcaaaaccaa acggatgtat tgttagaaaa agtggtggaa cgccaccaaa
     1621 aattatcaaa aaataatgaa attgtcattg ttgaaggttt aattccaacg cgtaaaaact
     1681 catacgctaa cagcattaac tatgaaatgg ctcaagccct tgatgctgaa attgtattag
     1741 ttgcagcacc ggcctcagat acaccagctc aattaaaaga gcgagttgaa gctgccgctt
     1801 cacaatttgg tggacgtaac aacccaaatt tactgggcgt tattatcaat aaattcaatg
     1861 caccagtaga tgattcaggt agaacccgtc cagatttgac tgaaattttt gattcatttc
     1921 agcactcaaa taataatgtt tcagaagtcg agcatctttt tgctaaaagt ccaattaagc
     1981 tgttaggctg tattagctgg aaagcagaac ttattgctac acgagcaatt gatgttgcaa
     2041 aacatttagg cgcttcaatt attaatgaag gcgaaataaa ggctcgtcgg attcgcggtg
     2101 tgacattctg tgcacgtaac ttaccaaata tggtcgatca ttttaaagcc ggtagtttat
     2161 tagttacctc tgcggatcgt cctgaagtgt tagttgctgc atcgttggcg gtaatgaatg
     2221 gcatcgaaat tggtgctatt ttactaaccg gtggttataa aattgatagc tcaattgcaa
     2281 aactttgcca acaagcattt gaaaccggtg tgcctgtatt ccgtattgaa ggtaacactt
     2341 ggcaaaccgc attaagccta caaagcttca gcttagaagt gcctgtagat gataaagagc
     2401 gtattgctgc aattaaagaa tatatggcaa gcaaatttaa tgtaggtttc attgatgagg
     2461 tttctaaagc cgctactcgt gcaagacgtt tatcacctgc agcattccgt taccaattaa
     2521 ccgaatatgc ccgtcaagcg aaaaaacgca ttgttttacc tgaaggagat gagcctcgta
     2581 ctgtgaaagc ggctgcatta tgtgctgagc gtggcattgc agaatgtgtg ttattagcta
     2641 acccaacaga cgtacaacgt gttgctgaag cacaaggcgt ggtattaggt aagggcgtaa
     2701 cgattattga ccctgcgagc attcgtgaaa attatgttga tcgcttagtt gaattgcgta
     2761 aagcaaaagg aatgactgaa gttgttgctc gtgagcaact tttagataca gttgtattgg
     2821 gtacaatgat gcttgaagct aatgaagtgg acggtttagt ctcaggcgca gttcacacaa
     2881 ccgctaacac tattcgccca cccatgcaga tcattaaaac tgcaccggga agctctattg
     2941 tatcttctat cttctttatg ctactacctg atcaagtatt ggtatatggt gactgtgcgg
     3001 taaaccctga cccaactgca gaacagctag cggaaattgc gattcaatca gcagaatctg
     3061 ccaaagcctt tggtattgac cctcgtgttg caatgatctc ctactctacc ggtacatcag
     3121 gttcaggtgc ggatgtagaa aaagtgaaag aagcaactcg tattgcccaa gaaaaacgtc
     3181 cagatttaat cattgatggc ccattacaat atgatgcggc gattatggaa gatgttgccc
     3241 gctcaaaagc accaaattca cctgtagcag gtaaagcaac tgtatttgtc ttcccggatt
     3301 taaatactgg taataccacc tataaagcgg tacaacgttc ggcagattta gtctctatcg
     3361 gcccaatgtt acaaggtatg cgtaaacctg taaatgactt gtcccgtggg gctttagttg
     3421 acgacatcgt ttatactatt gcgttaactg cgattcaagc aacgcaataa ttccctccca
     3481 aatgaaacca aatgccctta aaactaaggg catttttatt ttttacctac ccgacttttc
     3541 aatttaatca tataatcaag attagtgtta aaaaggagaa tttatggaaa aaattgaacg
     3601 cttatttgcc aataaccacg cctgggcaac taagatgaaa gatgaacaat cggattattt
     3661 taaagaatta gcggaacatc aaaagccaac ctatttatgg attggctgtt ccgatagtcg
     3721 tgtgcctgct gaaaaactca cagggttagg ccccggagaa ttatttgttc atcgaaatgt
     3781 agcaaatatg gtgattcaca ctgatcttaa ttgtctgtcg gttgttcaat atgcggtaga
     3841 tgtattagaa attgagcata ttattatctg tggtcacact aattgtggtg gtatcaatgc
     3901 ggcaattgca caaaaagaac ttggtttaat taataactgg ttgttacata ttcgtgatat
     3961 ctggtttaaa cacagccatt tactaggcaa acttccctat gaagatcgat caaatgtctt
     4021 gacccgatta aatgttgcag aacaagttta taatttaggt cagtcctcta ttattaaaac
     4081 cgcttgggaa cagggtaaat ccctctcgct acacggttgg gtatacgatg ttacagatgg
     4141 tttcttgatt gaccaaggtg ttatggctac tagccgagaa acattagaaa ttacctatcg
     4201 taatgcaata gctaaaataa caaccgaagc aaacgaaaaa atagttttaa ac
//
LOCUS       DANLUT010000174         4241 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.175, whole genome shotgun sequence.
ACCESSION   DANLUT010000174 DANLUT010000000
VERSION     DANLUT010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4241
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..611
                     /locus_tag="PXB38_002247"
     CDS             <1..611
                     /locus_tag="PXB38_002247"
                     /inference="COORDINATES: protein motif:HMM:NF017472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354512.1"
                     /translation="RIVWNHAKRTWIVASKLSRSANKSNATNTSLTTNIIKLSTLSLA
                     LSAGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKVSTALG
                     YNTTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFIGDHAG
                     LNHSNSTEYNIGIGYSASSNVTGNNTISIGNTAVLVIRLALM"
     gene            584..976
                     /locus_tag="PXB38_002248"
                     /pseudo
     CDS             584..976
                     /locus_tag="PXB38_002248"
                     /inference="COORDINATES: protein motif:HMM:NF017472.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1208..1561
                     /locus_tag="PXB38_002249"
                     /pseudo
     CDS             1208..1561
                     /locus_tag="PXB38_002249"
                     /inference="COORDINATES: protein motif:HMM:NF017476.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
     gene            1610..4204
                     /locus_tag="PXB38_002250"
     CDS             1610..4204
                     /locus_tag="PXB38_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5354513.1"
                     /translation="MNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNF
                     ERHLGSTVKIKGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNN
                     TGITIANGVADKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYV
                     SISDDGIQRANYDNSGSSGVNSMAIGVATRANGELATALGSEAEANGERTTAVGPRAT
                     ADGMNATSIGYNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEAT
                     GENSTAVGYEASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGS
                     SAIALGNSANAAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSATVATVA
                     TKSATLNGNTYTFAGTTPSSTVSIGSVGNERTLTNVAAGRISDSSTDAINGSQLYAAY
                     TEIDGLNTKVNELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATD
                     ANTLTVKLAKDIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADG
                     DISPISADAVNGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTV
                     NNVGSAITALNDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISN
                     GNGSLTVKLAKDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGI
                     NAAGTKVTNVKAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGAT
                     ATAGLPQAYLPGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGG
                     SISMGYQW"
BASE COUNT         1373 a          844 c          907 g         1117 t
ORIGIN      
        1 atcgcattgt ttggaaccat gcaaaacgaa cttggattgt tgcttctaaa ttatcaagaa
       61 gtgctaataa atctaatgca acaaatacat cactaaccac taatattatt aaactcagca
      121 cactaagtct tgcgctttct gcaggttttg caagtgctgc aacctattca ccaacctatg
      181 ggaccatacc agataataac ccacaaacat ctatcgcaat tggtgatgga tctaaagtta
      241 actcaacact agtaagcaca ataacaggct tagaaggaaa tagcggtaaa gtttctacag
      301 cattagggta taacacaacc gcgacagccg atttttcaac tgcattagga ggctttgcta
      361 acgctagttt tgcttcaaca gctgttggtg ggcaagccac tgccgataaa cgttccgtag
      421 cagtagggta caatgcaacc gcaatgggct tacgtgaagt ttttattggc gatcatgccg
      481 gattaaatca ctctaacagc acagaataca atattggtat tggttattcg gctagctcta
      541 atgtaacagg aaacaatacg atttctattg gtaatactgc tgtattggtt attcggctag
      601 ctctaatgta acaggaaaca atacgatttc tattggtaat actgctggag acggtactag
      661 tggtagccac aatattgcaa ttggtactta tgctaatgca aaactagcag gacctactac
      721 aaatgtaacc agtgatgata atatcgccat cggtaattcc gctcttgcaa atggtgttaa
      781 taattacaaa actacagcag caacaggaga aacggtaata ggaaaagcaa ctgctgtagg
      841 tagtcatgcc aatgcaactg gtattgttag ctccgcctat ggtgctgaag ctaacgcaac
      901 agctattcac tccacagcaa ttggtgcaaa atctcaagca aatggcgata actcaacagc
      961 aattggttat gaagcgaaga cttcaggcca cggtgcaacc tcattaggtt attatgcaaa
     1021 tgcaacagca aatttaacta ctgctgttgg tactcatgcg ggtgcaacca gcgattatgc
     1081 ttctgcattt ggtcgtgaag ccaatgcaag tggaggttct gcaaccgctt taggcaatcg
     1141 tgctactgca tcaggcgcgg cttctgttgc actaggggta agcgctaaag caacaaatca
     1201 acgcacaatt gcaatcggag aatcatcaaa tgcttccgcc tttaatgcaa ccgctatagg
     1261 tcgaaatgcc actgctgaac ataccgattc gataacgcta ggtagcaact cagttacagc
     1321 tatagccata ccaactacaa atgcaactgt aaatggtatt acatatagtg actttgctgg
     1381 aacaaatcca attgctacag taagtattgg ggcggaaggc aaagagagaa ctatcaccaa
     1441 tgttgctgca ggacgtatat ctttaagctc tacagatgcc ataaacggtt cacaattata
     1501 tttaacacaa caagctatag gtaatgttgc tgcaacaacc gcaaatatct taggtggtgg
     1561 ggcagctgtt actgaaaatg gaaatatcac tttcccaacc tacgctttag tgaatggcac
     1621 accagatgca gataaagaag gcaaacaagg gagatacact actgtttctg cagcactaag
     1681 cgcattaaac acagcggtga tcagtccgtt aacctttgcc ggtgatacag gaactaattt
     1741 tgagcgccat ctaggttcaa cagtcaagat caaaggcgga tctacaggca tattaaccga
     1801 gaataatatt ggtgttgtag ctgatggcaa tagtacttta accataaaat tagcagaaaa
     1861 agttaactta ggcgctaatg gttcattaac aacaggtgat accgttgtta acaatacagg
     1921 tatcaccatc gctaacggcg ttgcagacaa accggtaagt cttactaaat ctggcttaga
     1981 taatggcggt aataaaatcg ccaatgttgc cgcaggcgat gtagatactg atgcggtcaa
     2041 tgtcagtcaa ctcaaacaag ctatcagcaa atttgcaact cattatgtta gtatttcaga
     2101 tgatggcatt caacgtgcta actatgataa ttcaggctct agcggtgtta attcaatggc
     2161 tatcggcgtt gcaacaagag ctaatggtga gctggcaacc gcattaggct ctgaagcaga
     2221 agcaaacggt gaacgtacaa ctgcagttgg tcctcgcgca acagctgatg gtatgaatgc
     2281 aacttctata ggctacaatg cgaatgcaaa tgcaacaaat gccctcgcgg ttggttctgc
     2341 agccaatgca aatgctgata cctcaacagc tattggtaca gcttcaacag cgacagctac
     2401 ccgtgcaact gcattaggct ctaaatctga agctaccggt gaaaattcaa ccgctgtagg
     2461 ttatgaagca agttcaatcg gtgcagattc tcttgctgca ggctataacg caaatgcttc
     2521 gggtacacag tcaaccgctt taggtaactc tgctaatgca ggtggaatat ggtcaacttc
     2581 tgtgggtaga aatgccaatg ctgcaggtag ctctgcgatt gctttaggta acagtgcaaa
     2641 tgcagccggt gtagcttcta ttgcattagg tgtttcatca caagcaacaa caactgctgc
     2701 agtggctctt ggccaaaatg caaaagcaac acaccaaggt tctgttgcat taggtactaa
     2761 ctctgcaaca gtagccacag ttgcaacaaa aagtgcaacg ctaaatggca atacatacac
     2821 atttgcaggt actacgccaa gctcaactgt aagtattggt tctgtaggca atgaacgtac
     2881 tttaacgaat gttgcagcag gtcgtatttc ggactcatca acggatgcta tcaacggttc
     2941 acaactttat gctgcttata ccgaaattga tggtttaaac acgaaagtga atgagttaag
     3001 taatggagca cttacttttg tagatgatgc tggtactgaa attgttcgta aattaggtac
     3061 ttctctgaat gttaaaggtg gggccgatgc aaccatattg actgataata atatcggtgt
     3121 agtggcaaca gatgctaaca cattaacagt taaattagcg aaagacattg atttaactcc
     3181 tgccggctcc gtagctgttg gtaattcaaa actaaataac aacggcttaa ccattaataa
     3241 tggcccaagt gtcacaatga caggtgtcga tgctggcaaa ttaaaaataa ctaatgtagc
     3301 tgatggtgat atttcaccta tctcagcaga tgcagttaat ggtagccaac tttacgatac
     3361 ggcaaatact attgctaccg ctttaggtgg taattcaagt gtaaatgcaa atggtgctgt
     3421 ttcagcccca agctatactg tggttgatgg cgctcctaca aatgaagtta gtaaaacggt
     3481 caataatgta ggctctgcaa ttactgcgtt aaatgatgca gtaaccagcc cactaacatt
     3541 tgcaggtgat accggcacgc catctcaacg taaattaggt tctactgtta cagtaaaagg
     3601 tggggtatct aacgaatcac aactaactga taataatatc ggggttattt caaatggtaa
     3661 tggttcatta acggttaaat tagctaaaga tattaaagtt aattctgtca cagctcaaac
     3721 agtaacagct aacattgctg tagccgatac tgttaagact ggtgatacaa ccattgatac
     3781 taatggatta actattgtag ggggaccgag tataactaaa acaggtatta atgcagcagg
     3841 aacaaaagtg actaacgtaa aagcaggaac tgaagatact gatgcagtta actttagcca
     3901 attaaaagca acagaaaaaa atatcaataa taagatcaat aatattgatt caaaagtaaa
     3961 caaagttgat aaacgtttac gcgctggtat tgctggtgca actgcaaccg caggtttacc
     4021 gcaagcatat ctaccaggta aaagtatgtt agcaacggct ggagatacat accgtaatga
     4081 agctgcaatc gcagtaggtt attctcggat ttcagataac gggaaggtta tctataaatt
     4141 aactgggaac agcaatacca gaggcgactt tggtggtagt attagcatgg gttatcaatg
     4201 gtaattttcc aatagaaaat tgatttattg ctgaataaaa a
//
LOCUS       DANLUT010000175         4108 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLUT010000175 DANLUT010000000
VERSION     DANLUT010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4108
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(133..720)
                     /locus_tag="PXB38_002251"
     CDS             complement(133..720)
                     /locus_tag="PXB38_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL5354514.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLNT
                     LLTKLGKTPSEIESILEQQTEKGEMDNLFKGLINA"
     gene            complement(772..1077)
                     /locus_tag="PXB38_002252"
     CDS             complement(772..1077)
                     /locus_tag="PXB38_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354515.1"
                     /translation="MSFYNDLMESLTAMKEHLEGKRTLRTETLSRPEPLQISADEVKA
                     IRAKLNLSQAVFAKRLRTSVKTYQGWEQGKSTPNPQATILLRLVEQSPQVFEQIARL"
     gene            complement(1244..1807)
                     /locus_tag="PXB38_002253"
     CDS             complement(1244..1807)
                     /locus_tag="PXB38_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5354516.1"
                     /translation="MNAVFMTTNNTPILFTENSGGTERRRVIFKFDRIVPIEERDFNL
                     IDKIQAETGGIIRLLFDTFPEPLEAKALLEKQRVSQEALAVKMEVNHVLEFAQEFEIL
                     PTVNGLAMGSSLNNGTRDSAIYPAYIYFCQLNDIEPINRRTFTRAFKQALKELDKGEY
                     QTRESNGRTVTNVHYIDKLRTFNKWQG"
     gene            complement(2063..2476)
                     /locus_tag="PXB38_002254"
     CDS             complement(2063..2476)
                     /locus_tag="PXB38_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354517.1"
                     /translation="MKHELNLAGITALMSEPIKATLSFLDFPHIRIERLYHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAITAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNLERAKTILAGLFMVLTNADKWQLFI"
     gene            complement(2483..2734)
                     /locus_tag="PXB38_002255"
     CDS             complement(2483..2734)
                     /locus_tag="PXB38_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354518.1"
                     /translation="MRLAIRHYLDNDKGNQTPLFTFLSLYSETEPYPLPELLIVLGNR
                     IAKLEQQHNAMPSETDSITLGILRKQLSQLLKVAERIKE"
     gene            complement(2827..3438)
                     /locus_tag="PXB38_002256"
     CDS             complement(2827..3438)
                     /locus_tag="PXB38_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5354519.1"
                     /translation="MMKEINQAVFPKVFHKETVAMTNTLKVAEYFEKRHDNILKRLET
                     LECSAEFSLLNFKAAKYIDEQGKSRKMYLMTQDGFTLLVMGFTGKKAIQFKESYITAF
                     NAMRKQIIARAELKSDQLRLNEAIKLNLEKTGKQDIHAYARENNLVYITALGATAKKW
                     LLAQGYSANDEIRHHLNEQQLKLVDDLLAENAVMIKLGLEYDQ"
     gene            complement(3446..3679)
                     /locus_tag="PXB38_002257"
     CDS             complement(3446..3679)
                     /locus_tag="PXB38_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HDL5354520.1"
                     /translation="MTESTITHLADDVRIIRPIHARQKLGVGKTTFQDWQNPKSKRYR
                     PDFPKKIQLGANSVGYLESEINAFIQSLADNRV"
     gene            complement(3868..>4108)
                     /locus_tag="PXB38_002258"
     CDS             complement(3868..>4108)
                     /locus_tag="PXB38_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354521.1"
                     /translation="KIETKLEQTDITSIFDGDIPPKTDQDKLAHFIELIIQKSEFMKD
                     GKIPTYSELHTMLSHKYPHDAIPSKNTIKKYLGQH"
BASE COUNT          985 a          815 c          867 g         1441 t
ORIGIN      
        1 acttaaaatc atatctcctt taccggtttc accatcaaaa caaggattgg taagcagaat
       61 atataaatgc ttgtaggagt tctctacctt gccgtagttg gtcggtctaa gaaagttgct
      121 tgtcttttga cttcaagcat tgattaagcc cttgaaaagg ttatccattt ctcctttttc
      181 tgtctgttgc tctaaaatgc tttcaatctc gcttggcgtt ttccctagct tagtaagaag
      241 cgtgtttaaa gaaatcggct tgcttctgcc ttgtgggtct tcccattcgg gaatgtattt
      301 agggttatgg gtatattcca ctagggcgaa tggcttataa ttcccaaagg tcgcaaatac
      361 ctcttctaaa atttcggtgt cgctttctga aaggcaatca aagaagtatt catcttcggt
      421 atttacggat tttttaaggc tgattttgtg atcttcctta tctgctatcc actcgcccca
      481 aatactggtt ttttggtata agctcgcttc ttctcctcgc attaggttga gtgtgttgct
      541 taataccggt ccataaggca atgaataata ttcatcatta gaaatagaat agccgtatct
      601 ttgccacgat aagcgatccg caagataaag caatttcatt accttaatat gctccattgt
      661 tccgcctgcc ttatgtagca aataggcggt tgcttgggct atttttaatt catcaaacat
      721 tgttttatct cctgctacat cgcaaatagt gctttctctt aatttaatat tttaaagacg
      781 tgcgatttgt tcaaatacct gtggggattg ttccactaat cgcaaaagaa tagttgcttg
      841 tgggttcggt gtgcttttcc cttgttccca cccttgatag gttttaacgc tggttcgtaa
      901 acgcttggca aataccgctt gagagagatt tagctttgct ctgattgctt ttacttcatc
      961 ggctgaaatc tgtagcggtt cagggcgtga tagggtttca gttcgcagtg ttcgcttgcc
     1021 ctctaaatgc tctttcattg cggttaggct ttccattaaa tcattataaa aactcatatc
     1081 taccccttag agagcagttt caataaaagt taaattcatc ttatctattc cgttgcggtt
     1141 ctactgggtg ttatagtatc cgcaaagtga ggataaatca ataaaacaag taacaaaaaa
     1201 gcctagcata tttcatctag gctttgcttg ttggcggtag gggttagcct tgccacttgt
     1261 taaaggtgcg tagtttgtcg atatagtgaa catttgtaac cgtccgcccg ttgctttccc
     1321 ttgtttggta ttcccctttg tctaattcct taagggcttg tttaaacgct cgggtaaagg
     1381 ttcggcggtt gattggctct atatcgttga gctggcaaaa gtagatataa gctggataaa
     1441 tcgcactgtc tcttgtgccg ttattaagtg aacttcccat tgccagcccg tttactgtcg
     1501 gcaatatttc aaactcttga gcaaactcta aaacgtggtt cacttccatt ttaaccgcta
     1561 gagcttcttg gctcactcgt tgcttttcta gtagggcttt tgcttcgagt ggttcgggga
     1621 aagtgtcaaa cagtaggcga ataatgccgc ccgtttcggc ttgaatttta tcaattaaat
     1681 taaagtccct ttcttcaatc ggcacaatgc gatcaaactt aaaaatcact ctccgccttt
     1741 ccgtgcctcc gctgttttcg gtaaacagaa tcggggtgtt attggttgtc ataaagaccg
     1801 cattcacttt ttggctaaac ggctttttgt gttttgggtt gaagaatata tcatcgcccc
     1861 ctgtgattgc cctaatcgtt gccccgtccc cggtatattt cggttgctct ccggagatga
     1921 taaatgtttt atcaatgata atgcaacgct taacttcatc atcaagagct tttagcgtta
     1981 tgcctacgtg gttattttca cctcccagca gtttcgctat ttcggtgtaa gtgcttttcc
     2041 ctgttccgcc tagccctgtt acctagataa ataattgcca tttgtcggcg ttagttagca
     2101 ccataaacaa gccggctaaa atcgtcttag ctcgctctaa gttgccgtgt cggtcaataa
     2161 atgggtttgt tcgttgtggg tggggtagct tgttgatttc actcaataag tcatcattca
     2221 ctaatagcgg cgtggcggtt agctgttgat gataggcagt aatcgctaga gcctctaaaa
     2281 agcccgtagc ccctgccatt tcaatattga tatgatcttc aaggtcaaga gaaagcacac
     2341 cgataaaaaa cggtctgccg ttatcgtggt acagtcgttc aattcggata tgcggaaaat
     2401 ctaaaaagct caaggttgct ttgataggtt cactcattaa agcagtaata cccgctaaat
     2461 taagctcgtg tttcattttg gtttattcct ttattctttc cgccactttt aacagttggc
     2521 taagttgttt tcttaaaatg ccgagtgtga ttgaatcggt ttcgcttggc attgcgttat
     2581 gttgttgttc cagcttcgct attcggttgc ctagcacaat taaaagctcg ggcaatgggt
     2641 aaggctcggt ttcagaatag aggcttaaaa acgtgaataa gggtgtttga ttgcctttgt
     2701 cgttatcgag atagtgccga atagccagcc gcattaaaac ggggttttgc ttggcggtaa
     2761 tgcacctcat tatttaccct cttgtttgcg gtagtaactt aatgcggttt cttgtagcct
     2821 tgcttttcat tggtcgtatt ccagccctaa cttaatcatc acggcatttt ctgccagcaa
     2881 gtcatcaacc agtttgagct gttgttcgtt taaatggtgt cggatttcat cattcgctga
     2941 ataaccttga gcaagtagcc attttttagc agttgctcct agtgccgtga tgtaaacaag
     3001 gttattttct cgggcgtagg cgtgaatatc ctgcttgcct gttttctcaa gattgagttt
     3061 gattgcctcg tttagtcgga gctgatcgct tttcaattca gcccttgcga taatttgctt
     3121 tctcattgca ttaaacgctg tgatatagct ttctttgaat tgtattgctt tcttaccggt
     3181 aaagcccatc actaaaagcg taaagccgtc ttgggtcatt aaatacatct ttcttgattt
     3241 gccttgctca tcgatatatt tagccgcctt aaaattgagg aggctaaatt cagcagaaca
     3301 ttctaaggtt tcaaggcgtt tcaaaatgtt gtcgtgtcgt ttctcgaaat attccgccac
     3361 tttgagcgtg ttagtcattg ctacggtttc tttgtgaaag actttcggga atacggcttg
     3421 attgatttct ttcatcattt cccccttata ctcggttatc tgccagcgat tgaataaagg
     3481 cgttgatttc gctttcgaga taacccacgg aatttgcccc tagctgaatc ttcttcggga
     3541 agtctgggcg atagcgtttt gatttcgggt tctgccagtc ttgaaaagtg gttttgccta
     3601 cgcctaactt ttggcgtgcg tgaatagggc ggataatgcg aacatcatca gctaagtgtg
     3661 tgatagtgct ttcggtcatt tatattcccc tatgctgtta aattgaaatg cttaaacctt
     3721 gaaagggttt aggcggttgc agtagggatt ttaagaaatg aaaagttatt caggggaaga
     3781 gtgaactatt gaacagtgtt cattgaacaa atgaactgtt gttgaacggt ttaaataaaa
     3841 aaatccgcca taattagcgg attttgatta gtgttgtcct aaatatttct tgattgtatt
     3901 tttagatggg attgcatcgt gtggatattt atgacttagc attgtatgaa gttcactata
     3961 ggttggtatt ttaccgtctt tcataaactc acttttttga ataattagct cgataaaatg
     4021 agccaattta tcttgatctg tttttggtgg gatatctcca tcaaatattg atgttatgtc
     4081 tgtttgttct agttttgttt ctattttt
//
LOCUS       DANLUT010000176         4050 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLUT010000176 DANLUT010000000
VERSION     DANLUT010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4050
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            49..1389
                     /locus_tag="PXB38_002259"
     CDS             49..1389
                     /locus_tag="PXB38_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL5354522.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTDLKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            1392..2732
                     /locus_tag="PXB38_002260"
     CDS             1392..2732
                     /locus_tag="PXB38_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5354523.1"
                     /translation="MSVSQRFINFMNTHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELIEKARMAAQ"
     gene            2870..3694
                     /locus_tag="PXB38_002261"
     CDS             2870..3694
                     /locus_tag="PXB38_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5354524.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQISEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(3738..3980)
                     /locus_tag="PXB38_002262"
     CDS             complement(3738..3980)
                     /locus_tag="PXB38_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5354525.1"
                     /translation="MSDKSIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSA
                     LKKLGAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
BASE COUNT         1161 a          841 c          865 g         1183 t
ORIGIN      
        1 aaaatgtatt tcagtttagt tctatttaga ttcaatagga gtctgtgtat gagttgcaac
       61 acttcaccaa aacgtttcca cgccagttgg gagtcgatca aacagcacca agtaccagag
      121 tggtatgaag atgctaagtt tgggattttt attcactggg ggatttactc cgtacccgcc
      181 tttgccccac cgacctgtca gttaggtgaa attgatattg atgaacagtg gttctgtaat
      241 aacccttatg cagaatggta ttttaattcc atcaatgtca aaaaaggccc gacctacgaa
      301 catcatatca aaacttatgg cgaatccttt gcctataacg acttcctgcc actatggaaa
      361 gcggaaaaat ggcaaccagc agaatgggcg aaactgtttg ccaaagctgg cgccaaatat
      421 gtggtattaa ccaccaaaca tcacgatggt ttctgtctct atccaagtaa atataccgat
      481 ttcaactgca tgcaagccgg accgaagcgg gatttaatgg gcgagctgac tgaaaatgtg
      541 cgggagcaag gcttaaaaat gggcgcttac tactcgggca ttatcgattg gacttattcc
      601 tctgccccga ttttcaccga aagtcaaaac ttctcaaacg cttgcccgac ttacgaatac
      661 gctgactacg cctataaaca agtggtagag ctgatcgacc gctataaacc agatgtattg
      721 tggaatgata ttggctggcc aaaagtgggc gagcatatgt taccacatct atttgctcat
      781 tattacaaca gcgttcaaga gggcgtagtg gacgaccgct ggaacaaact atggtgcgat
      841 ttcacctcca aagaatacaa acacggcgtg gcttcccgtg ataagaaatg ggaaatgtgc
      901 cgtggtatgg gcttatcgtt cggttataac caggtagaag acgaaagcca tttgatttcg
      961 gtgaaagact tgatttccct attggtagaa accgtagccg acaacggcaa tttattgctg
     1021 aatatcggcc cgaaagcaga tggcactatt ccgcaagagc aagttgaacg cttattagca
     1081 ctggggagct ggctggaaat aaatggagag ggaatctata aatcccgttg tagccaacac
     1141 caaaccgagc aaatcggtga tgtaacctat cgttatacca aagttggggc ggatctctat
     1201 ctttacattg atggcttaac cgaagcccaa atcagcttgc cactgtcagt ttatggtgag
     1261 ctacaagcac tcaataccga cctgaaattt accattgaaa acactgcaca aggcagagtg
     1321 ttacatattc aaaactacca accggattgg tatgtattag gctttaaaat tgcagatggg
     1381 gagaaatagg tatgtctgtt tcacaacgct ttattaactt tatgaatacc cacgttgccc
     1441 cagtggcacg ccgaatggaa aatcaaccgc atatttccgc tattcgagac ggttttattg
     1501 tagtgttacc attcttaatt gtcggcagct ttattatgat tttgctaatt ccgccatttg
     1561 atgaaaatac ccaaaatgct ttcggtcaag cttggtggcg ttttgctaac tgggcaagtc
     1621 cttacggttg gaatttcttc caaatgtcgt ttaatgcgat ttcattattt acctctgcca
     1681 gtatcgccta caaccttgcc aaagcctata aaagagagcc cctgccagcg gcatttctct
     1741 cggtaatggc atttttgtta gtggctgcac cggtcaaaga cggaatgatg gatattaaat
     1801 tctttggcgg tattgggcta ttctctgcga tttttattgc catttattcg gtagaaatga
     1861 cccgcttgtt ggagttctta aaaattaaaa tccgcttacc gaaagaagtg ccgcacgctg
     1921 tagcagaatc tctgaatatc gtgattccaa ttttagcgat tttactgact ctctatccgt
     1981 ttgccatttg ggtggaaagt gccacaggtc gtaatattcc acaactaatt atggacttta
     2041 tggcgccatt gattgctgtg agtgactcgc taggggcaat ttgcttgttc gttattgcta
     2101 cccatttgct ctggttctta ggcattaacg gctcattggt actaatgcaa ctttggacac
     2161 cattcctact gcaaaatatg gcggcaaact tagcagcatt ccaagctggt gaaccgctcc
     2221 cctttatcat caccaattcc ttctgggatt tctatatcgt acacggggca agtggtggtg
     2281 taatagcctt ggcattcctg ctggtacgca gtaaatcggc acacttacgc tctatcggta
     2341 aaatcggctt ggttccgtcc ttcttctcta tcggtgaacc aattgtgtat ggtgtgccaa
     2401 tggtggttaa tccgctgttc tttatcccgc tgattttcgc accactagcg aatgcggtta
     2461 ttgcctacct gattttagat tttaacctta ttcaccgtgt ttacttgatg gcaccgtgga
     2521 caacaccggc accgattggg gcatatctgg tttctgccgg tgatatttgg gcaccaattt
     2581 taagtattgc actgattatt ttggatattg tgatctacta tccattcttc aaaatgtatg
     2641 aaaaagtctg cgtcgagaaa gaaaaagcac aaaatctaga tgaaaaagca caacaggagt
     2701 tgatagaaaa agcacgaatg gcagcacaat aacacttatt tctagcgtaa ttgagagggg
     2761 ttaatcgaaa gattagccct tatttttgca aaaaattgac aaaatttatc cgcttgtaaa
     2821 caagaaaagc gtataatgaa ataaaaaatt caagcagaga taatttgaaa tgaatggacc
     2881 tactcaatta gcacattttc aagaacaaat ccgaaaagag tatgacggac taagtaaacg
     2941 tttaaaacaa gtggcacagt atgtgctgga taatggcaac agcgtggtgt ttgatacggt
     3001 ttctaccatt gctgaacggg ctgatgttcc tccttcaacc ttaatccgtt ttgcgaatgc
     3061 atttggattt agcggtttta atgaaattaa acagctttat cgccaagata tgatggaagg
     3121 cacatcacgt tacaccgaac gtgtgcaact ttttcgtcaa attgaaccgc ttgatgagca
     3181 aaacagtgag ctcaatcata ttttagatgt gttcgtacag ggtaatacgc aggcactgca
     3241 acagttatcg acacaaatca gcgaagagca gttagcacaa acggtggata ttttacacaa
     3301 tgctaaacgc atttttattg tgggcttaaa acgctcattc agcattgcga actacctaaa
     3361 ctatgcgtta caccatttgg attatgatgt ttttatgatt gatggttccg gcggtatgtt
     3421 tgacgagcaa ttaagccgaa ttcgtgaagg tgatgcggtg attgccgtga gcttttctcc
     3481 gtatgcgaat gaaacgctca atgtggtgac agcaaccgcc agaccggggg tgaaacacat
     3541 tgcgatcacc gatagccaac ttagcccgct cctttcattt agcgatgtgt cgtttattat
     3601 taaggaagca caggtgagtg gttttcgatc ccagtgtgct acaatgacgc ttgcacaaac
     3661 gattgccgtt tcactggcgt tgaaaaaagc ctagattaag aaagtgaaag acctgcgtaa
     3721 atgcaggtct ttggttatta gccgattaaa gcgttaattt catcacgata ctgcccggct
     3781 tttgcaccaa aaataatttg ctgcgtatca ccgactttaa tgacatcaac cgccccaagc
     3841 tttttcagtg ccgacttatt taataaaccg ttgttatgta acaccacacg taaacgggtt
     3901 aaacaagctt caacttgctt gatattttct ttgtttccta aagcattaat aatttctaga
     3961 atgatagatt tatcagacat atttcctcca tacctattta tatttaaaac tcttattatg
     4021 atattttaaa cattttctga tggttagaac
//
LOCUS       DANLUT010000177         4042 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLUT010000177 DANLUT010000000
VERSION     DANLUT010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4042
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(102..1460)
                     /locus_tag="PXB38_002263"
     CDS             complement(102..1460)
                     /locus_tag="PXB38_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5354526.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGGLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(1530..2357)
                     /locus_tag="PXB38_002264"
     CDS             complement(1530..2357)
                     /locus_tag="PXB38_002264"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL5354527.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKACRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(2371..3459)
                     /gene="aroB"
                     /locus_tag="PXB38_002265"
     CDS             complement(2371..3459)
                     /gene="aroB"
                     /locus_tag="PXB38_002265"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL5354528.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(3483..4004)
                     /gene="aroK"
                     /locus_tag="PXB38_002266"
     CDS             complement(3483..4004)
                     /gene="aroK"
                     /locus_tag="PXB38_002266"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL5354529.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
BASE COUNT         1317 a          917 c          674 g         1134 t
ORIGIN      
        1 gcttggttaa ttaagcaaga attgcaaatt ccccacaaaa tttaaccgct tgtcactaaa
       61 aataaagctg tttgaaaatc cattcaaaca gcttatagaa tttagagtga attaaagaaa
      121 atcaccaaga taatcaccgg aatcacaaag cgaacatagt taaaccaaat agtggtaaac
      181 attttacccg cacctaattc ctccttcgcc tcttctttta gaacaaagcc aacgaaaatc
      241 gcgctaccta aggcggttaa aataaacaga atattgccac taatataatc gaaggcatca
      301 aaaatgctct tgcccataac ctgcacatct tgcaatatat tgtcacttaa tgctgatgga
      361 atattaccca acagaaaaat agtagccaaa gtaataaaaa tagctttttg acggctaatc
      421 tttgccttct cttgcaatgc agtgataata acttcataaa tagttaacga ggttgttaat
      481 gccgccacca ctaatagact aaaaaagata accgcaaaaa ctgttccccc ccacatattt
      541 gagaacacaa tcggcaaact ttggaatact aaagtcggac ctgaatttgg agcaacgcca
      601 aagctaaata atgacggaaa aatcataaaa ccggcaagta ccgcaattaa ggtgttcatc
      661 accccagtaa ttgttgctgt ttttactaaa ttctcgctct tatcaaggta gcttgaaagg
      721 gttatcaaca caccaaaacc aaggcttaat gcaaaaaata cttgccccag cacaaacaca
      781 aacaattttg gtgtgatttt tgaaaaatcg ggcatcagat aaaaggcaat gccttcagca
      841 gcccccggta aggtaatatt tcgaaccacc atcacaatca ggaaaataaa cagaatcggc
      901 atcaaatatt tcactgaacg ctcaataccg tccacaatgc cttttaccaa aataaaataa
      961 ttcaccaata caaaaagtgc cgtataagca ataattgtca ttgggctatt aaaaatactt
     1021 tgttggaaga attgttgggt cgtgccaacg gtaacaggtt gagacagatc tagtgtcccc
     1081 gtgagtaagc caccgatata atttaatacc caaccaccaa gtaccatata gtaggcaaga
     1141 ataccaaatg ctccaagcaa gcccatatag ccaagaattt tccaacctga ggcaattttt
     1201 ttaccattag caaaaccggc aaaagcatca atagcattca ctctcattcg gcgaccaatt
     1261 acattctcca ctaatatcat agggatacca attacgatca tcgcaataca aaataaaaac
     1321 acataagcac cgcctccgtg ttcccccaca agataaggga aacgccaagt tgcaccaaaa
     1381 ccgactgttg caccagcaac ggtcataata tacgccaatc ggttagacca agattggcgt
     1441 tcttgttgtt gatttgccat ttaatactcc atcggctaac aataccgctt caaccaacaa
     1501 gcggtcagat ttttagaaaa tattacaaat taaatgaaga gtgcgaataa ctcgccaact
     1561 ttaacccttg agcccacctt ctgccctatt gaacgctgta cctgaatttg ggtaatatcg
     1621 gcagattgat aaatcctacg ggtaaaatca gtatcgtgat ttgaaattaa tacgggaacg
     1681 cctaatcctt tcatttctaa agccagtgtt gccaaacgcc cttgttgctc taggctaaaa
     1741 ccaccgccag catattgcgt aaaattcgtt tcttgtgcta aaggagcgta aggtgggtcg
     1801 cagtaaatca cataatccgt taattgattt tttgccaact caaagacctg ttcaaaatcc
     1861 gcacacacaa aagttgcctt ttgtgctttt tcagcaaaaa aacgtagttc tttttctgga
     1921 aaataatggg ttttataacg cccaaaggga acattgtacc cttttttctg gttataacgg
     1981 caaagtccgt tatagccaaa tcgatttaaa tacaaaaaaa tcaccgagcg acgaaaaata
     2041 tcttttgagc gattaaactc cgcacggcat gctttataaa aggcttctgt attcgcttgt
     2101 gggtgaagaa acagttgctt tgtttgcgca atatattcct caacatctgc tttcaccacg
     2161 ttgaaaagat taatcaagtc aggattaata tcagcaagaa tataacgttc aaaatctgta
     2221 ttcagaaaga ccgaacctgc accaacaaaa ggctcgacta aacaagcctt ttttggcaaa
     2281 tgggtttgaa tatctggaat taagcgatat ttaccgccag cccattttaa aaaggctcga
     2341 tgcttagggt gattcatttc attttaaaca ttaacgttgg gtaaaacgct caatagaggc
     2401 taatacttga gattctgtgg cttgcgatga aacgtaagct tcaccaagtg atttcaataa
     2461 aattaggcgt aattgacctg ccagtacttt tttatctcgc cacatataag gtagatattc
     2521 tgccggttcc attccatcag gtgaaattgt tggcaaattg gctcgggcca ataatttttc
     2581 caagcgagca acctcttgag gacttaaatc ccccagaata cgagataatt ccgcagcctc
     2641 tagcatacca accgaaacag cctctccgtg taaccataca ccatagccca tacgtgcttc
     2701 aatggcgtga ccaaaggtat gtcctaagtt tagtaatgca cgatctcctt tttccgtttc
     2761 atctcgagca accacgtcag cttttagctg gcaacaacgc tgaatacaat attccagctc
     2821 atcttgcttg agactgacca aatcatcaat atgcttttca agccattcaa aaaaagtaac
     2881 atcaaagatt gcaccgtatt tgatgacttc cgccaaacca gcactgactt ctcttttgga
     2941 taaggtatgg agcgtattgg tatcaacaat cacagaaaca ggctgataaa aagccccaat
     3001 catattttta ccgagtgggt ggtttactgc cgttttcccg cctactgaag aatcaacttg
     3061 agccagtaaa gtggtcggaa tttgtataaa acgaatacca cgttggtaag aggcagctgc
     3121 atagcctgca acatcaccga ttacaccacc gcctaaagca attaaagtgg tatcgcgatt
     3181 atgatttttt tctaataatg cggtaaaaat caaatttaat gattctagcg ttttatattc
     3241 ttcaccgtcg ggaatcaata ccgaatcaac gtggcaaccc agctccttta acgcatttgt
     3301 taccacacta agataatgtg tcgccaccgt tggatttgag acaatcatca ccttatctcc
     3361 agattttaat gggctataac tagcaggctg atttaataac cctgcaccaa ttataatcgg
     3421 gtaacgacgc tcttttaatt ccacattgac ttgtaacata tcttagctcc tttcttacct
     3481 ggctactgta aattatcaat catatcaata atttgatttg ccactacttt agcgctctgc
     3541 tcgtccgtat gaatagtaat atctgcaatt tcttcataca atgggttacg gattttcgct
     3601 aactcttcca acgttttacg ggggtcttct gtttgcaata aagggcgttt tttatctcgc
     3661 tgagtacgtt caaactgttt atccactgtc gtttctaaat aaataacgat accacgagcc
     3721 gataacacat tacggttatc tttagataaa atcgaaccac cgccagttga aagcacgata
     3781 ccataatttt gcgtcagttc atttagaata cgttcttcac gcttacggaa accctcttca
     3841 ccttcaacat cgaagatcca atcaatatcc gcacctgctc gttcttcgat cacactgtcg
     3901 gaatccataa attccatacc taatgtttga gcaagctgac gaccaatcgt acttttacct
     3961 gctcccatcg gcccaatcaa aaaaatatta cgtttttcag ccattatttc ttcttcattt
     4021 taaaatttac taaacatttg at
//
LOCUS       DANLUT010000178         4030 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLUT010000178 DANLUT010000000
VERSION     DANLUT010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4030
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            84..338
                     /locus_tag="PXB38_002267"
                     /pseudo
     CDS             84..338
                     /locus_tag="PXB38_002267"
                     /inference="COORDINATES: protein motif:HMM:NF017476.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1470..1742
                     /locus_tag="PXB38_002268"
                     /pseudo
     CDS             1470..1742
                     /locus_tag="PXB38_002268"
                     /inference="COORDINATES: protein motif:HMM:NF017476.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2814..3386
                     /locus_tag="PXB38_002269"
                     /pseudo
     CDS             2814..3386
                     /locus_tag="PXB38_002269"
                     /inference="COORDINATES: protein motif:HMM:NF017476.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3387..4030
                     /locus_tag="PXB38_002270"
                     /pseudo
     CDS             3387..4030
                     /locus_tag="PXB38_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
BASE COUNT         1453 a          611 c          889 g         1077 t
ORIGIN      
        1 aggaaagcgt aactgtaggt gacaacttag cagttcaaca agataaaaat aataatacgg
       61 gtggtaagaa ctatcatgta acgttgaata acactttaaa cctgggtaat gatggttctg
      121 taacaattgg tgatacagtt attaatcaaa atggtttaac tattaacaat ggtggaccga
      181 gtgttacaac aataggtatt aatgctggta acaaagtaat tactaacgta gcagatggcc
      241 agaatgacac agatgcagta aatctccgcc agttaaaagc tgtgcaaact aaagtagaaa
      301 aaggtacaaa tgttgcatct gtcactgcaa ataaagatgc aacaggtgta acaacttata
      361 ctattaatgc tgatggtaca actgcgagtg cagatgaagc ttctaaagat ttcttaactg
      421 ttactacggg tgagaaaaac caagataatg taacagatta caaagttggc ttaactaaga
      481 aagcaacgga tgctttagcg aaggctgaaa ctgcgattca agagtttact acttcagtaa
      541 atggtcaaac tgttgaaaca attaacaaag acaacaaaga tgttggtttt gtaaatggta
      601 agggcacaat tgctcgtaat gataatagta acattacctt tgatgtagat gttgatgata
      661 atactattaa agtaggtgag gatggtaaat taactgttaa caaagaggca gttgatacta
      721 atacttatgt tactggtggc acagtagtgt atgctgataa tggcgatgca acaacaacgt
      781 taaacaaaaa tgatggttca tctgttactg taacaggcat taaaaataac tttgttaata
      841 aagcagaaac ctctacagat ggtaaaactg caactttaac tcgtaatgat ggtggtacag
      901 ttaatattga cctaactaat acggtaaaca cagctgtaaa tgaagcaaca gagaaaggct
      961 ttaagatttc agctgataaa ggtgatgaag atcacgttaa gctaggcgaa acagttaaat
     1021 atacctctac tgataaaaac attattacga ccgtaacgaa taaccaaatt gattttgcgt
     1081 taaattcaac tttagctatt ggtggcaaag atggtaaatc aggtattggt ttagatggta
     1141 ctaacggtac aatcggttta actggcccag cgggtaaaga cggtaaatct gcaacagcaa
     1201 atattactgt taaaaatggt caaccaggtg ttgatggtca agatggggag accaaaactc
     1261 gtattgttta tgatggtgaa gaagttgcaa cccttaacga tggcttaaaa tttggcgcta
     1321 acacaggtga tgttcacaat gcaaaattaa atacgcaagt gaatgtaaaa ggtgctgaag
     1381 acaataccga gtggaataag tttgatgcag gtcagaacat catgacccaa atcagcggta
     1441 ataatattac tgttgcattg gcgaagaatg tgaacttgac tgaagatggc tctgtaacta
     1501 ttggtggcac aaacattact aatgaaggta ttaccattaa taatggcccg aaaatcacta
     1561 ataaagaagg tagtgtaagt gttgctaatc aagatggaag tccaacaaaa attactaacg
     1621 tgaaagcggg tgatgtaaac aatacttcta cagatgctgt taatggaagc cagttatata
     1681 ctgtacaaga aattgcaaat gcaggttgga atttaactat taatgaagga cagaatagca
     1741 gtaatgttaa gcctaaagag acggttgatc taaataataa agatggcaac attcaaatta
     1801 ctaaagatgc ccataatgta acatttgcat taaataatga gttaactatt ggtggaccag
     1861 gtaaaaatgg tgctgatggt aaagacggct ctatcggtgt taaaggtgct gatggttcaa
     1921 ctggtgttgc tttaaatggt aaagatggtt caattggcat taacggtaaa gatggtgcta
     1981 atgcaaatat tactgttaaa aatggtaaac ctggtgttga tggcgtagat ggtacaacta
     2041 aaacacgtat tgtttatgaa accaaagatg gtccggaaga agttgcaaca cttaacgatg
     2101 gtttaaaatt cgttggtgat gatgatcaag ttattactaa gaaacttaac caaactttaa
     2161 atgtaactgg tggtgctgat ttaaccaaat tggctgataa caatattggt gtagtaaata
     2221 ctaataatgg attagttgtt aaattatcta aagatgtaaa cttaactaaa gatggttcgg
     2281 taactattgg taatacaact ttaaatgatt caggattaac tattgctaat ggtccaagtg
     2341 tgactaacac aggtattagc gctggtaaca aacagatcac caatgtatca agcggtttaa
     2401 ctaatgcaaa tggcgaaaaa actgatcttg ccaatgcaac gacaaccaat gcggttaacg
     2461 taggcgattt aaaagataca gttaataacc taactaatgc aacaacgggt ggctttggtt
     2521 taactggcga tgataagaat actgaagtta agcaagactt aggtaaaacg attcaagtta
     2581 aaggcaaaga tggtgtaacc gtaaccgcaa atgttgctga aaaagcatta gaaattgtat
     2641 tagccggtga tgtatctgta agtggtaaag acggaaaaga cggctctatc ggtgttaaag
     2701 gtacagatgg caaagacggt gtaactatca atggtaacgg cactgttgta gtcggcaaag
     2761 atggtgctcc aggtaaaatt ggcatcaacg gtaaagatgg tgcaaatgca acaatgactg
     2821 ttgagaaagg cgctcctgga ttagatggtg ctaaaggcaa ggatggtaaa gatggtactc
     2881 aaactactcg tatcgtttac acaaacgaaa caggtggtaa agaagaagtt gcaaccttaa
     2941 acgatggttt acgttttacc ggtaataacg aagttgagaa caaacataag ttaaacagct
     3001 tagttactat tattggtgag ggtgtaaata aagaacagtc aggcgctttc caatcagcag
     3061 caggcaatat taatgttgtt gcagatggca atggtaattt aactgttaaa ttagcgaaaa
     3121 acctaaactt aactgattca ggttctgtaa ccattggtgg cacaaacatt actaatgaag
     3181 gtattaccat taacaatggt ccgaaaatca caaatgatgg cgataatgtt aaagttggtg
     3241 atgtaaatgg tgcgccagtt aaaatcacga atgttaaaga aggtgattta agcgaaactt
     3301 ctaaagacgc agttaacggt tcacagcttt atgcaactaa ccaaaatgta accaacttaa
     3361 gcaataaagt agctcaaggc ttcaatatta ctgctgataa tggtacggct gacaatgttc
     3421 aattaggtga aactattacc tatacttcat ctgataaaaa tatcgttaca acggtaagcg
     3481 acaataagat cgattttaaa ctgagtgctg aagctgtaga taaatttacg gttaaatact
     3541 tctctgtaaa ttcaacggtt gcagaaaaca gattaaatga tggtgctaaa ggtgttaact
     3601 ctattgcaat tggtccgaat gcaacctctg tagatcaagg tgctattgca ctgggtacaa
     3661 actcaaatgc aaatggtaat gctgcagcgg ctttaggtgt caactcaaaa gctgaaggta
     3721 ttcaagcaac tcggtaggtt ctcaagcaaa tgcaactgca aatggtacta ctgcgattgg
     3781 tcgtgaaaca acagcaagtg caggtgaggc aacagctgtg ggttctaacg caaatgcaac
     3841 atcagagaaa gcaactgctt taggtgtagg ctcaaaagcg acagataaag cagcattagc
     3901 tgtaggtaca aatgcaactg caagcgcaca gtctgcagta gctgtaggta ctcaatcggt
     3961 agctgataaa cagttcgctg ttgcagtagg tatgggggct caagcaacct tagaaaactc
     4021 tgtagcatta
//
LOCUS       DANLUT010000179         3990 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLUT010000179 DANLUT010000000
VERSION     DANLUT010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            34..1509
                     /gene="mepM"
                     /locus_tag="PXB38_002271"
     CDS             34..1509
                     /gene="mepM"
                     /locus_tag="PXB38_002271"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL5354530.1"
                     /translation="MAVFLLAVFSLFVGIVLALKDQSSINNTSSQEDIIAIDKQEKYQ
                     SINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDEIVDDQTATSYEDELVGQD
                     DEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRIQNQFSYTVARGDKLKDVL
                     EQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELEYMNWLVSEKEERVYERKE
                     NGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDRQINQLAVGLQSQIATNKL
                     KKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAIQADNGRYYSRYGETLSGG
                     FARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPIGTPIIAPSDGVVEHVAYQ
                     ARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIALSGNTGGSTGPHLHYEFH
                     INGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLKM"
     gene            1519..2202
                     /gene="dsbC"
                     /locus_tag="PXB38_002272"
     CDS             1519..2202
                     /gene="dsbC"
                     /locus_tag="PXB38_002272"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL5354531.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2287..>3990
                     /gene="recJ"
                     /locus_tag="PXB38_002273"
     CDS             2287..>3990
                     /gene="recJ"
                     /locus_tag="PXB38_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL5354532.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNAQEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQLK
                     VE"
BASE COUNT         1335 a          643 c          881 g         1131 t
ORIGIN      
        1 agagatcgta agcgacataa aaaacatttt aagattgcgg ttttcttatt agcggtattt
       61 agtctatttg ttggtattgt tctcgcacta aaagatcaat cctcaatcaa taatacatct
      121 tcacaggaag atattattgc cattgataaa caggaaaaat atcagagtat caacactaat
      181 ttggcggaaa ataatactct ccatcaggag caacattcca gttttattaa ttatgtgact
      241 gatttactga ctcagtcggc attagtaatc gaacatgacg acgaaattgt tgatgatcaa
      301 acagcgactt cttatgaaga tgaattagtt gggcaagacg atgaagtaga agaagggatt
      361 gaaacggttg aaaatcaagt tcctggggaa aaactcccag aagaagctga aaaggcatta
      421 gaagatttac ttgatgtggc tgatcaagca ctacgaattc aaaaccaatt cagttatacc
      481 gtagctcgag gcgataaact taaagatgta ttagagcaat caggcttaac tgcatccgtt
      541 gcgaaaaatt taattaagca acattcggca ttagcacaat tagaaccggg tcaacaattt
      601 tattgggtat tagataatga cggtgaatta gaatatatga actggctggt ttccgaaaaa
      661 gaggaacggg tttatgagcg aaaagaaaat ggtaaatttt cttttcaaag atttgagaaa
      721 aaaggggaat ggaagttaga tgttgtaaga ggaactattc agaatagttt tgcggttagc
      781 ttaaaagccg ttggcttatc agaccgccaa attaaccagc tagcggttgg attgcagtca
      841 caaattgcga cgaataaatt aaaaaaaggg gataggtttg caattctgat taagcgggaa
      901 tatattgacg gcaaagtaac ggatttagga aatgtggaag gaatccatgt aattagcagt
      961 aaaaaaagtt attatgctat tcaagcagat aatggacgct attatagtcg atatggtgaa
     1021 acattaagtg gaggatttgc tcgtcatcca ttattatttg cagcaagagt aacttcttct
     1081 ttcaacccca aacgcagaca ccctattaca gggagaatta gtccgcataa aggggttgac
     1141 tatggcgtgc caataggtac tccgatcatc gcaccaagtg atggtgtcgt agagcatgtg
     1201 gcatatcaag cccgtggagc aggacgttat attcggataa aacacggaca tattacgact
     1261 gtttatatgc acctcagcaa aacgttggta aaaccagggc agagtgttaa aaaaggggag
     1321 cggatagcat tatcgggtaa tacaggcggt tcaaccgggc ctcatttaca ctatgaattc
     1381 catattaatg gtcgaccggt caacccgatt acggtaaaat tgcctggctc aaattcaggt
     1441 atgggtaata aagaacgtca agcattctta aataaagcga agaatgtaga aagtagatta
     1501 aaaatgtaag gattctcaat gaaaaaaaat ctaatcactt taggattaat gtgtttatca
     1561 accatcacgt ttgcttcaga tgcaaaacta aaaagccagc ttgaaaaaat tggagccaca
     1621 gatgttaaaa tttcagattc tccattaaca ggctttaaaa tggcgacttc aaatgaaggt
     1681 gttgtatata tcagccaaga cggtcgttat gtaattcaag gtaaagtatt tgagctaaaa
     1741 aatggtaaag cgattgatat tactaatcaa ggattgttgg cagaattgaa ttcatacact
     1801 aatgaaatga tcgtatatcc agcgaaaaat gagaaacatg tgattacggt gtttatggat
     1861 attacttgcc attattgcca tttactacat actaaaatca aagaatataa tgatttaggt
     1921 attaccattc gctatttggc attcccgcgt ggtggaatga atacccaaac agcaaaacaa
     1981 atggaagcta tttggacatc agcagacaaa gtaaaagcac tgaatgatgc tgaagatggt
     2041 aaattaccaa cccaaataaa aacgccggat attgtgaaaa aacattacca attagggatt
     2101 aaatttggtg tgacaggtac cccaaatatg gtaacttcag aaggtgagtt gattggtggt
     2161 tatgtagagc ctaaagaatt agcgaaaatg ttaagtgagt aattcattaa cttgaataca
     2221 agcggtcttt ttttgtaaaa tttttgcaaa agaagaccgc ttgttgtttc attaaagaag
     2281 agtattgtgg aaaaaataat taaaaggcgc ccattattaa caacggaaat agtctctaca
     2341 aacccgttat taaatcgaat ctatcaaagt cgaggcataa agaatacgca agaactagag
     2401 cataatttaa agaatttgca tagaccacag caacttgcca atattgagca agccgttgac
     2461 ttgctattac aagcctttcg tgaaaaaagc cggatcatta ttgtgggtga ttttgatgca
     2521 gatggtgcaa ccagtacatc gcttgccctt attgcgttac gccaattggg tttcgataag
     2581 gtagattatt taattccgga tcgtttttct caggggtacg gattgagtgt agcggttgct
     2641 gaaatggtat tagcaaaagg ggcggattta gtcttaacgg tagataatgg aatttcttcg
     2701 actgaaggca ttgctctgct aaaaagccat cagattcaag ttttggttac cgatcatcat
     2761 ttaccgccag agagcctacc caatgcagat gcactggtaa accccaattt agctttttgt
     2821 gaatttccgt ctaaatcttt agccggggta ggcgtgatct tctatgtaat gatggcattg
     2881 cgttctcgta tgagagaaca acatttattt gaaaataaac cagagccaaa ttttgctgaa
     2941 ttactggatt tagtcgcttt aggcacagtg gctgatgtag tgccgttaga tcaaaataat
     3001 cggatattgg tgcatcaagg gttacagcga atccgttcag ggcattgccg tttagggata
     3061 aaagctttag cggaggtggg caagcgagat ctttctactt tgcaagcagc agatttgggt
     3121 tttgctatcg caccacgttt gaatgcagct ggtcggttag aaaatatgtc tttaggggtt
     3181 gagttactaa tttgtgaaaa tatggaatta gctcgccggc ttgcgcttga tcttgattct
     3241 cttaatcaaa cccgaaaaga gtttgaacaa gaaatgaaag cagaagcact gtcgatttgt
     3301 gcgaatttgc caagtcttgc gcagtctgaa caggcacacg gaatagtgtt atatcaagca
     3361 gattggcacc aaggtgtaat tgggatctta gcttctcgca ttaaagatca atttaaccgt
     3421 cctgtcattg cttttgcaca agaaagtgag gaaagtgaat atctaaaagg ttctgctcgc
     3481 tcgatcaacg gagtacatat gcgagattta ctggaacata tcgatatgcg acatccagac
     3541 ttgattgaaa aatttggtgg acacgcaatg gcggctggtt tgactatcca tcaatcaaaa
     3601 ttagatttat ttaaacagat atttgaccaa tctattaatg caattatcga gcctgagcaa
     3661 ttacaaggca tcatttatac cgatggtgag ttaaatgcac aagagtttac tttagccaat
     3721 gccgagatga ttaggcaagg tgggccttgg ggacaacatt ttccagaacc tagttttgaa
     3781 ggggagttta gcattctcca acaaaaatta ctcgcaggta agcatttaaa attaatgttg
     3841 caatcagaga aagggcaact atttgatgca atttggttta atgtggatgt aagggcgttt
     3901 cctgacttat cgatcaaaaa ggcaagatta gtttataggt tggatattaa tgaatttcga
     3961 ggagagaaat ctttgcaatt aaaagtggag
//
LOCUS       DANLUT010000180         3987 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLUT010000180 DANLUT010000000
VERSION     DANLUT010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3987
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(164..370)
                     /locus_tag="PXB38_002274"
     CDS             complement(164..370)
                     /locus_tag="PXB38_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354533.1"
                     /translation="MRTEFEDIVQNTENLASGLYSLSHLLEILDNTEDQISMSGLAHL
                     VAIIASATKKQANDAATALNCVDN"
     gene            complement(381..980)
                     /locus_tag="PXB38_002275"
     CDS             complement(381..980)
                     /locus_tag="PXB38_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HDL5354534.1"
                     /translation="MNNFQIATFTGSLQNQSTLLINARDLHQMLQIGRDFSNWIKSRI
                     ESYGFVENEDFTCSPNLASEKSKGLASFWGSQNKIDYHITLDMAKELCMLERSELGQQ
                     ARRYFIQKEKEANALKQAQPKATIEISTDKYIELLETQNQLLKQAMKPQKYKLRLSAE
                     EKSHIFRLHQQGLSTGQIVQQSGRSESAVRAVIRENLGK"
     gene            complement(1336..1758)
                     /locus_tag="PXB38_002276"
     CDS             complement(1336..1758)
                     /locus_tag="PXB38_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL5354535.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDNNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDEQLHKLVQMLASYNYRHGMSV"
     gene            complement(1742..2296)
                     /locus_tag="PXB38_002277"
     CDS             complement(1742..2296)
                     /locus_tag="PXB38_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354536.1"
                     /translation="MKLCKCPICHSEISLEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYTPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(2296..2466)
                     /locus_tag="PXB38_002278"
     CDS             complement(2296..2466)
                     /locus_tag="PXB38_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354537.1"
                     /translation="MEYQKMPEYRLCKKKSGDIVLQQLVICEITPATWHNPYPDSRTY
                     WVDLETIEEGAE"
     gene            complement(2538..2906)
                     /locus_tag="PXB38_002279"
     CDS             complement(2538..2906)
                     /locus_tag="PXB38_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354538.1"
                     /translation="MQQQIIKWLANGETGTSSKTMAFVIGFDVIPSRSGYPHDVSDFR
                     LCFQLVEAAPEMRNHIYKMKAISPIWSEFAENWEELERRYRAEQGQGRLPHTYALIQQ
                     ITDKDQNVIRMGNVSFSFGQ"
     gene            complement(2919..3494)
                     /locus_tag="PXB38_002280"
     CDS             complement(2919..3494)
                     /locus_tag="PXB38_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL5354539.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLGVKGFKVSKFDDEFYLVKPDKRYKKGKELAE
                     DFKAINEIYEQHRDFSPYILKRLNMFYFASDFSYSPTSGRSYLAVADIFENTLLVKVP
                     MPIDKNDQPFPDIAEGLVEIKESEFLAIQGK"
     gene            complement(3517..3699)
                     /locus_tag="PXB38_002281"
     CDS             complement(3517..3699)
                     /locus_tag="PXB38_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354540.1"
                     /translation="MTEQDKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(3705..3917)
                     /locus_tag="PXB38_002282"
     CDS             complement(3705..3917)
                     /locus_tag="PXB38_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5354541.1"
                     /translation="MKTEQKATKFDRFRYYAEKAAEAERKGNYIEAQDHWEVAKLSAK
                     STANLGWAEQRAEFCKRMHNKPFEGE"
BASE COUNT         1012 a          884 c          701 g         1390 t
ORIGIN      
        1 ttaggtggct cttcaatatt ttgtatagat gatggtttat tatcaaataa ttttttaata
       61 aatgagaaca tcttaaccct caattctctg cctgaattgt ttaaaatcta ccacaaaaaa
      121 gcccacttta aaaagtgggc tatgcaaaaa atagtgtaaa tttttaatta tcgacacaat
      181 ttaaggctgt tgctgcatca tttgcttgtt ttttagtcgc actggcaatg attgcgacaa
      241 gatgggctaa gccactcatt gaaatttggt cttcggtatt atccaaaatt tccagtaaat
      301 ggcttaaact atacaagcca cttgccaaat tttcggtatt ttgcacaata tcttcaaatt
      361 ctgttctcat aacccactcc ttatttgcct aaattttcac gaataaccgc acgcacggca
      421 ctttctgaac gccccgattg ttgcacaatt tgccctgtgc ttaatccctg ctggtgcagg
      481 cggaaaatat ggcttttttc ttcggcactt aggcgtagct tgtacttttg cggtttcatc
      541 gcttgtttaa gcagttggtt ttgggtttcg agtagctcaa tgtatttatc ggtgctgatt
      601 tcgattgtgg ctttgggttg ggcttgtttc agggcgttgg cttctttctc cttttggata
      661 aagtaacggc gtgcctgttg ccccaattcg gagcgttcaa gcatacagag ttcttttgcc
      721 atatcgaggg tgatgtgata gtcaatttta ttttgactgc cccaaaagct ggctaaacct
      781 ttgcttttct cgctcgccaa atttggcgag caagtaaaat cttcattttc aacaaagccg
      841 tagctttcaa ttcttgattt aatccagtta gaaaaatcac gcccaatctg taacatctga
      901 tgtagatcac gtgcattaat tagtaaggta gattgatttt gaagagaacc cgtaaaggtt
      961 gcaatttgga agttattcat tgtgtttttc cttgaattgg aaaccctatt ttgagtaggg
     1021 cgaccgacag ctcaaaactg cacaataaac agcggagtta ttcccctttc gggtcttgta
     1081 ttcctcgcac tgtcggtcat tgatttaaat tatatttatt tttctacacg gatattccga
     1141 agctcaaagg ctttctgata ttcaggcaaa aaaatagcac atactttcag ccgtgcaagc
     1201 tgtattgtcg atttttgaga tcgttgtcga aaaataaact ttttccgctt gacagtcaag
     1261 cccaaaaatc ataactatgc aaaatatttc gtaaaattta ttattcagcc ctccgcagaa
     1321 ggctgtaaat aaattctata cactcattcc gtgcctgtag ttataactcg ccaacatctg
     1381 cactaattta tgcaactgct catcggtcag ccattgcacc cgctcaatac caaacgagcg
     1441 tttggcaatg gcgtgggcgt aatcccacgg cttttggctt tgataaagca acgccccgat
     1501 tttatttatc aacccttgcc ggtgaggggc ggttttactt gctgttgggc gtttgccgta
     1561 ttttttcgac ttcaccacaa accctttggc tttcattgtt tgcaatacgg tcattaattc
     1621 gctgtcggtc atcattgagc agctcggctt atccaccgct tccagcaata gcatcttgta
     1681 ggcgttgtta tccagtttta gctcattttt accgatatgg attttctgta tcatctgctt
     1741 tctagtttgc ggttgcattt tgcttttcct cctgccattt cagccaaatt tgataacttt
     1801 cggtgttctt aacggcttcc agttgcccca tttgcttcat tcgttccaca tacatcaccg
     1861 catcgtgttt cttttggtct gcttggcgtt gctgttgctc aaggctactc actgctttcg
     1921 cttcacttct tactactgca aattgtggct tcacgctttc atatactttc ttcaagtaat
     1981 tatgatttgc cagcggctca catctaccgg tttctctacg atttcggcgg acttgctcca
     2041 ccgtatccat taaggctttt tctaacacat tagagggtgt ataaagctcc aacaaactct
     2101 gcacaatttt caaggctcgg ctattggcaa ggctgttttt ctgtggctta aataacccta
     2161 aataagccac cactgcacgc ccacaattcc caccgatatt gactatcgta tttaacaact
     2221 cacgccccgc atcatcttca atcaacgcct ccagcgagat ttccgaatgg caaatcgggc
     2281 atttgcatag tttcatcatt ctgctccttc ttctattgtt tcgagatcaa cccaataagt
     2341 tcgactatca gggtatgggt tatgccaagt tgctggagtt atctcgcaaa taactaattg
     2401 ttgtaacaca atatctcccg atttcttttt acataaccga tattcaggca ttttttgata
     2461 ttccatttta tgctcctata aaacacatta ttcagcccac ttaaataggg gttaaatggg
     2521 ctgtaaatgg gttttgctta ttgaccaaat gaaaaactca cattccccat tcttatgaca
     2581 ttctgatctt tatcagtaat ctgttgaatt aaggcatagg tgtgcggtaa cctcccttga
     2641 ccttgctccg ctctatatct tctttctaac tcttcccaat tttcggcaaa ttccgaccaa
     2701 attgggctga ttgccttcat cttgtaaata tggttacgca tttctggagc ggcttctacc
     2761 aactgaaaac aaaggcggaa atcagacacg tcgtgagggt aaccgctacg acttgggata
     2821 acatcaaaac caattacaaa tgccattgtt ttgctacttg tccctgtttc accatttgct
     2881 agccatttaa tgatttgttg ttgcatttct gtcatttttt atttcccctg tattgctaaa
     2941 aactcacttt ctttaatctc aaccaatccc tctgcaatat caggaaatgg ttgatcattt
     3001 ttatcaatag gcattggcac tttaaccagt aaggtgtttt caaaaatgtc tgctacggct
     3061 aaataacttc gacctgatgt tggggaataa ctaaaatcac ttgcaaaata aaacatattc
     3121 aaacgcttta agatgtaggg tgagaaatca cgatgttgtt cataaatttc attaatcgct
     3181 ttaaaatctt ctgcaagttc tttccctttt ttgtaacgtt tatcaggttt gacgaggtaa
     3241 aactcatcat caaatttact gaccttgaac cctttaacac ctaaaacttg gctaatattg
     3301 gttgctttac aagcaatccc tataactatt ctatgaaacc agcctgacct actaattaat
     3361 ccatcattga aaggatattt ttctaaaata gcattgagct tatccttgcg ttcttcttta
     3421 gatacttgat aatctgcata aatgcttttt agtggctctt gggttatatc ccctttaaaa
     3481 aatctaaatt tcatttttaa ctccttgcta gtttagttaa tgtttacgat ttgccgttaa
     3541 taacttcaaa tgcacctttg gcaacaaatc ttgcaccgtg ccgagataca cgccgctgcg
     3601 aataaaatca ctttgtttta aatacttttg ggcttgaata atctgcatta acgcctcgtt
     3661 taattggctg ttaagttcgt ttttatcttg ttcggtcatc atatttattc cccttcaaat
     3721 ggcttgttgt gcatacgttt acaaaattcc gcccgttgtt ccgcccagcc aaggttagcg
     3781 gtcgattttg ccgataattt tgcaacttcc cagtggtctt gggcttctat ataattgcct
     3841 ttgcgttctg cttctgcggc tttctcggca tagtaccgaa agcggtcaaa cttagtcgcc
     3901 ttttgttctg ttttcatttt ttcctcctgt ggttaaaaca ctttataaat gcccttctat
     3961 cttgtccccc tctttgaaaa agagggg
//
LOCUS       DANLUT010000181         3780 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.182, whole genome shotgun sequence.
ACCESSION   DANLUT010000181 DANLUT010000000
VERSION     DANLUT010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(80..2644)
                     /locus_tag="PXB38_002283"
     CDS             complement(80..2644)
                     /locus_tag="PXB38_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL5354542.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKALKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHVKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2768..3466
                     /locus_tag="PXB38_002284"
     CDS             2768..3466
                     /locus_tag="PXB38_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL5354543.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3442..>3780
                     /locus_tag="PXB38_002285"
     CDS             3442..>3780
                     /locus_tag="PXB38_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354544.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIENKIISLNSNHTNTLPFAEPKKIAQLLAIIDNL
                     PLKNGGIETIQ"
BASE COUNT         1163 a          833 c          628 g         1156 t
ORIGIN      
        1 aaaataaaat tggcacttat tatcgcaaga aatcccccta tttttcaact tttaagagca
       61 ttatccttgt aataaattat tagaataatt caccgctttt tagcacccct ggtggaggta
      121 atcctaaacg taacggcgca gattctgttt tttgaggcgc tttttcagta taagctctct
      181 ctacaatata acgttttgta ggctcagtac ccttaataaa atactcttta cgtccatttc
      241 ctaagaaacc actattaggg tcaatattaa cctcaataat attttttgga agggtacttt
      301 tttcgacagg cttatctgac aatgcaactt tcatataatt tgtccaagct ggtaaagcag
      361 tactagaacc tgaagcacct ctacctaata ctcttttatt atcatcaaag ccaacgtaca
      421 caacagtaga aatattagca ccaaatcccg cataccaagt tgccttggca ttattggttg
      481 taccagtctt cccgcccaca tccgctcgtt ttatcgtatt gagcatttta tagcttgttc
      541 ctcgccagcc atattcaggc tcaccagtaa ttgctgtagc taaagcacta cgcattaaaa
      601 aagcgagttc atcactaata acatgaggag cgtaacgtaa ccctttgaca tgatgagaag
      661 attctgccat taagctcggc gcatttttct cgctattgtt cgcttgtaat tcaggttctg
      721 aatcgccaac atcttccaca acatcgtcgt catcattatt cgaggaattc gctatagttt
      781 gtacaccgac ttgagcttca tcatgaattt tgactgattc aaaatattta ggctcagggt
      841 aaacaactgg gctatcgcaa ctattacaag ctactacagg atttgcttga tataactcgt
      901 agccttgggc atcaataata cggtcaatga tatatggttc aatcaaataa cctccattat
      961 taaatactgc ataagctcga gccatttcta atggcgtaaa agatgcagca cccaatgcaa
     1021 gagattctgt tgcaacatac tgatttcggt taaagccaaa acgttgtaag tagtctgcaa
     1081 cataatcaat ccctgccatt tgtaatatac gaatagccac catatttttc gatttaccta
     1141 atgcaacacg agttctcaac gggccgccat aaaccccatc ggcattttta ggtcgccact
     1201 ctttttgccc cttcttttta atgacaatag gagaatcgct aattgttgtt gaaagactta
     1261 gccctttatt cattgccgct gtgtaaataa acggtttaat cgcagagcct acctgaacta
     1321 atgactgagt cgcacgattg aaacggcttt gttcaaagct aaagcctcca acgatagatt
     1381 caatggcacc gttttcacta ttaattgaca ctagggctga atttacctcc ggaatttgtc
     1441 ctaaagccca ctccctattt ttattttgac gtacccaaat ttgttcacct gcttttaacc
     1501 ctttaggtgc aaaagaagca tttgtacgtt ttaaaacaga gatatcacca tttgccaata
     1561 aaattgtata ttttgattta tctgcttgca ttacaacagc tggtgtaaac ggctctgatt
     1621 ttggcagctt acttaaatga tcgataattt tctcatcgtc ccaagcagaa ctacctgtcc
     1681 ataatttttc agcgcctcgc caaccatgac ggcggtcata atcaatcaaa ttttcacgta
     1741 acgcatcttg tgctgctttt tggtctgctg aaagtaccgt ggcgtacact tttaagcctt
     1801 tgttataagc aatattttct ccatagcgtt tcacaatttc ttgacgaacc atttctgtca
     1861 cataatccgc tcgaaattct aatgtcgcac catagtagtt agctactact ggctctgctt
     1921 tagctttctc atattcctct tttgtaatat ctccggtttc tagcattctc ccaagcacta
     1981 cattacgacg gtcttccgcc cgttttactg aataaagtgg attcatcgtt gaaggcgctt
     2041 ttggaagccc tgcaataatt gctatttcag aaagggttaa atctttcaaa gctttattaa
     2101 aataagtttt agccgcagcg gcaacaccgt gagaacgata ccctaggtaa attttgttta
     2161 aatacagctc cagaatctca tttttactga gaacctgttc aatttctaaa gctaaaattg
     2221 cctctttggc cttacgctct aaactacgtt caggtgttaa gaaaaagttt ttcgccagct
     2281 gctgggtgat tgtacttgcg ccttgagtat ctccctggct agtgcgccat attgcacgca
     2341 taataccttt aggatcgatc cctttatgct cgtaaaaacg tgcatcttcg gtagcaagaa
     2401 tcgcttttac taacatcggt ggaatatcat caagcttgac cggaatacgg cgttcttctc
     2461 ctacttcacc aattaattta ccatctaagg taaaaatctg cataggctgc tgtaactcta
     2521 catttttcag cgttgccaca tcaggcaaat cagatttgaa atgcatgtac agtaaaccac
     2581 caattacccc acctaaaacc aagagtgaaa gtaaagcact aaatattatt tttgcgatcc
     2641 gcatcgaaaa aatctctttt ggttaatgac gaaacataaa tttaaagcca atattaggtc
     2701 actaagtata agctaaaaac gcttacttcg cataactaat tgcaaaactt tacttactat
     2761 acttactatg aaattactta aagcacattc aaaaacacct tcaaaccgta tcatcttagg
     2821 cttaagtgaa gatgaacaac gttactgctt agtcaaaaat aaagcagaaa aattcaccgt
     2881 tttttggcaa gccaagcctg cgagcatcga agagcttatc ggtaatctca ccccacaaga
     2941 acaagcaatg atgacgctgg ttcgcccgat cccttaccaa tacatttggc gaaaaaccgt
     3001 ttttatggct aacaccctca atgaagctca attacaccgt aaggtaattc acattttaaa
     3061 aaatgagcag ccacttgcat tggatctact caatattgac tatcagcgat ttccaagcag
     3121 caacgataat ctggataaag tggttatcta cgccgtgcga aaaagttata ccgagaattt
     3181 gagccaattt aacagcatct tagattgtga gctgcattgc tatgcacggg ctataattca
     3241 tttaacacaa tcccaaaata atcagcctgc gccctgtttt tcatttaaac agaagtactt
     3301 ccaatttacc gagacggaat tactgatatt gcaaacagaa cctgaggatt gtattcatct
     3361 atctgatctc aaaattgacc atcttgaaat cgagtgtgag caagagaaac agctatattg
     3421 cctcgcctta ggagcaagtt tatggaatgg caaggtattg atttaagtgc taatcgaaaa
     3481 aataactggt ttgccggcag tgataaaggc atcaaaaacg tgatttatac acttttatta
     3541 tctgccctca ttagcttggc tctgattttt ctctatttgc aaaaaaatca agaaattcaa
     3601 ccgcttgcac agcaattaga gctggtaaaa accgatatat taaatattga aaataaaatt
     3661 atcagcttga atagtaatca tacaaacacc ttgccctttg ccgagcctaa aaaaatagca
     3721 caactactgg caataataga taacttaccg ctcaaaaatg ggggaattga aacgatacaa
//
LOCUS       DANLUT010000182         3766 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLUT010000182 DANLUT010000000
VERSION     DANLUT010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            14..2464
                     /locus_tag="PXB38_002286"
     CDS             14..2464
                     /locus_tag="PXB38_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL5354545.1"
                     /translation="MTVEVGGVVITADLEFENLLRDTQKVDKAMDDIGKSTLKAEKGL
                     KGLETQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQMGSNASTVIAQQGSQ
                     ILSIFGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAAQKNLSEVVTQTESGV
                     SALSAKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKAFEQFDGFFGSFTNSS
                     QSIRNAIDELKRYESKGKDVGAVIKELGGTYGGAIAEINALDSVTSEMSKTLGITQSE
                     ALGLIKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNKLTRTINDNSVSALDA
                     ETSVRLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKAATIGKTERETAKYAA
                     TLLATTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTADAKAAREAEAAAKKS
                     AQAKKQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGAAATKEQREEAEKLAQ
                     SIYGATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILYPQKIMEAEAARAAIE
                     EQYRQQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGLLNGTMSVRDAFASIA
                     NTILNSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKALAASFAPAASMVSLAT
                     QGANAIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGENNQPEIFKASNGMQY
                     MIPGQSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASANQAAVAKALSNQIKA
                     SVRLELQSQMRAGGVLAR"
     gene            2468..2797
                     /locus_tag="PXB38_002287"
     CDS             2468..2797
                     /locus_tag="PXB38_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354546.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            2819..3265
                     /locus_tag="PXB38_002288"
     CDS             2819..3265
                     /locus_tag="PXB38_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5354547.1"
                     /translation="MASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEIFRFHNGVS
                     QTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVEDFGQPVEA
                     KVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
     gene            3273..>3766
                     /locus_tag="PXB38_002289"
     CDS             3273..>3766
                     /locus_tag="PXB38_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5354548.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKDGNAGGVYR
                     FYSGLNELKTSVVWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIET"
BASE COUNT         1246 a          756 c          896 g          868 t
ORIGIN      
        1 taaggaattg tttatgacgg tcgaagttgg cggagttgta attaccgcag atctagaatt
       61 tgaaaatctg ctaagagata ctcaaaaagt tgataaagcg atggatgaca tcggaaaatc
      121 aacattaaaa gcagaaaaag ggctgaaagg gctagaaacg caggcaacca aaacggcgat
      181 agcagtaaat caagccacaa acaaaatgaa aaatatccgt ggagtagcag gtcaacttgg
      241 ttatcaaatt caagacatct caataatgct tcaaatgggt tctaacgctt caaccgttat
      301 tgctcagcaa gggtcgcaaa tcttaagtat tttcggtcca atgggagctg ttgcaggggc
      361 gatcttagct attagtggtg ctattggtgg ggcgttactc cctagtttgt ttgattcaac
      421 tgatgcaact gagcttttgg cagcagctca aaaaaatctc agcgaagtag ttactcaaac
      481 ggaaagtggt gtttccgccc tttctgcgaa aatcattaaa ttagcaaaag taagcgaaga
      541 tgcagcaaaa gcaaaaattg cagtagctat gagtgatgca aaaatagcta ttaaggcagc
      601 aggggattca tcacaaaagg catttgagca atttgacggc ttttttggat cgtttacaaa
      661 ttcaagtcaa agtattcgga acgcaattga cgaattaaaa cgctatgaat caaaaggtaa
      721 agatgttggt gccgtaataa aagaacttgg aggcacatat ggtggtgcaa ttgccgaaat
      781 taatgcgctg gattctgtga caagcgaaat gtctaaaacg cttggtatta ctcaatctga
      841 ggctcttggt ttgataaaac tgttggctca attagagcaa gacaaaagcc ctgataatat
      901 taaattactc gcgatagctt tatctgactt aagcgataaa aatgggtggg cgaacgaaga
      961 gctaaataag ctaaccagaa cgataaacga taattcagta tctgctttag atgccgaaac
     1021 atcagtaaga ctcttagagt ctgctataaa agacttgcaa aatgcaatcc aaaactccca
     1081 aggtgcattg gatggcaatg tagcaaaaat gaatcaactt gcagatgcgg cagaaagaaa
     1141 agctgcaacg ataggcaaga ctgagcgtga aactgctaaa tatgcagcta cgctattagc
     1201 tacaaccgat gaagctaaaa aaaatcttga ttccacatta agtaggattg acgcatcata
     1261 cgatcaaatc gaagcctatc aagccgaaca aaaagcctta caagataaaa agaccgcaga
     1321 tgcaaaagct gccagagaag ctgaagcggc tgcaaaaaaa tccgctcaag ccaagaagca
     1381 agttgtcgaa cagttgcgac aaatggctac acagtacgag attgctgttt tgaggcaaaa
     1441 gggaatgcat ctcgaagccg taaaattaga agctggtatg cgtttaggag ctgcggcaac
     1501 aaaagagcaa cgagaagaag ctgaaaaact agcacaaagt atttatggag caaccgcagc
     1561 aagtcagaac tttaacgcta tacaagccca agcatctcct gttactgcat tagaccaacg
     1621 acatcaacaa cagctagctc agatcgaaga atataaaatc ttgtatccac aaaaaataat
     1681 ggaagcagaa gctgcgagag ctgcaatcga agaacaatac cgccagcaac gaatggaagc
     1741 tcaatgggag gagtggaagc aagcgagcga cggggcgaga atgtttggtg atgcggttga
     1801 tgctgttggt tcaagtgcaa caagcacaat tacggggcta ctaaatggca caatgtccgt
     1861 gcgtgatgct ttcgcatcaa ttgcaaatac gatcttaaat agtgtagtac aaagccttgt
     1921 cgaaatgggt atggctcaag ttaagcaaat gattatgggg caaactgctg ccaaggcttc
     1981 tatggcggcg caaatggtgc aagctaaagc gttagctgct tcatttgcac ccgcggcctc
     2041 tatggtttct cttgccacac agggggcgaa tgctattccc gctcaagctg cgatcacgtc
     2101 aactatgagt atggctcaag tcgccgcggt gacaggtcgt aaacttggcg gccctgtatc
     2161 agctagacag atgtatcgtg tcggcgagaa caatcagccc gaaatcttca aagcgagcaa
     2221 tgggatgcaa tatatgatcc ccggtcaaag cggtcgtgta ttcagcaaca agcagtcgca
     2281 aggtcaaggt ggaggcgaaa gcaaaacagt agctgtcatc gtaaatcaaa ccaatcactt
     2341 tagcagcgat gaagccagtg caaatcaagc ggctgttgca aaagcattga gcaatcaaat
     2401 caaggcttcc gtgagattgg aattgcagtc acaaatgcga gctggtggag ttctagcgag
     2461 gtaatcaatg caaacattta atttcaaggt tgagcaagac tacactgttc aaaatgagcc
     2521 cagtgtcgtc atactaaaat ttgccgatgg ttacgagcaa accgctccca aagggttaaa
     2581 ccacaatctg aaaaaatacc aaggcattac cgtaaaagcg aacaaagcag aagcggtgaa
     2641 gattcagcaa tttctcaatg ctcacggtgg gtataagaaa ttcaactggc gcgatagaac
     2701 aagcgatgag acggtaacgg ttcgttgcag aagctggagc tccactaaat taggtgcagt
     2761 cattgagttt acacttaatt tcgatgaggt gatttaatgc caaaagcccc ccaaaaaaat
     2821 ggcatcagag ttgataaaac tcgaacaaga tgccctgatt gagctgtggg agatagatct
     2881 cactcacatc tactctagct caaacccaaa tcagcgcgga gagatattcc gctttcacaa
     2941 tggcgtgagc caaacacaac agaacatctg gtggcaaggc aatgaatacc aagcataccc
     3001 gattgccgcc gatggttttg agatttcggg tcaaggaccg tcaaatcgtc caacactcac
     3061 tgtctctaac ctgtacggtg ttgtcacggt attagtagaa gatttcgggc aacccgtaga
     3121 ggcgaaagtc agcagtgaag agactgtaga tggcaatatc caaatgacgg tggaactgct
     3181 gaaaaaaatg gatcaaatcg ccgatcaacg ctaccgtaga aatcagttaa atgatttaag
     3241 aacaggtgga acattatcta aataggtgaa gtatgccaat tagtatttct aaccaaatga
     3301 aactcgacct tgccaaactt gagcaaaatg caatgcttga tttgtacgag gtagatttgc
     3361 gtaaattgca agacaaagac ggcaatgccg gtggggttta tcgtttttac tcgggtttaa
     3421 atgagctgaa aaccagcgta gtttggcaag ggcggactta cgacccttac cccatcgagg
     3481 caacaggatt tgagcgtaac agcagcggcc caagcaatcg ccctactctt acgctatcaa
     3541 atctgtttgg cttagttacg ggtattgcta atcagtttga tgagtgtatc ggggcgattg
     3601 ttcgccgtca tcaggtttac gcccaatatt tagatgccgt gaattttgcc gggggtaatg
     3661 cgaaagctga tccaaatcag gaaataatca gtcattttgt gattgagcag cttaccagcc
     3721 tcacccgaga aacggcgacc tttacgctgg cattaccgat tgaaac
//
LOCUS       DANLUT010000183         3717 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLUT010000183 DANLUT010000000
VERSION     DANLUT010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3717
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            30..200
                     /locus_tag="PXB38_002290"
     CDS             30..200
                     /locus_tag="PXB38_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354549.1"
                     /translation="MKNQHNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTKAN"
     gene            175..1044
                     /locus_tag="PXB38_002291"
     CDS             175..1044
                     /locus_tag="PXB38_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5354550.1"
                     /translation="MNAQPKQINPILKLHPRQPEAKKVNVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            1041..2402
                     /locus_tag="PXB38_002292"
     CDS             1041..2402
                     /locus_tag="PXB38_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL5354551.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            2399..2935
                     /locus_tag="PXB38_002293"
     CDS             2399..2935
                     /locus_tag="PXB38_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5354552.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            3026..3241
                     /locus_tag="PXB38_002294"
     CDS             3026..3241
                     /locus_tag="PXB38_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354553.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            3225..>3717
                     /locus_tag="PXB38_002295"
     CDS             3225..>3717
                     /locus_tag="PXB38_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5354554.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQL"
BASE COUNT         1255 a          634 c          883 g          945 t
ORIGIN      
        1 aacggtggta atttacaagg agttaccttt tgaaaaatca gcataatgat acacaaaaaa
       61 gctccttatg gcaagagttt gaatatcgaa aacggttaaa aaatctgatt gaaagcggtt
      121 tatccgtagc cgaaattgaa acccgttcac aacaaattta tgaggagctg aaaagtgaat
      181 gcacaaccaa agcaaattaa cccaatttta aaactgcacc caagacaacc agaggcaaag
      241 aaagtgaatg ttgatgatgg ttatacgcaa attccgaatg agttattaaa agcaattttg
      301 cgatcgggtg ttttaggttg gaaaggctct tacttactgg ctaccgtctt aaaaacattg
      361 tcttggcata aagaaagtga ttggttcacg cattcccaag tgtgtgaaat gatgaatatt
      421 gagccgacaa aataccatat taatcaactt tccgctgctc gaaaagaact tatccgtgaa
      481 aatatcttgt ttgaagatgg taaggaaaca ggggtaaatc tcagtgtttt tgaatggaaa
      541 atggtatatc ccgaaaaagt agggagttcc cgaaataata gggaattaat tcccgaaaaa
      601 gtagggaatg ggtatcccga aaaagtaggg aacacaaaag aaactattac aaaagaaaaa
      661 ataaataatg aatttactaa cgtaaattct gtgcaacagc ccgagacctc tttgccgaaa
      721 aaaacaaaat ctgagccggt cgattatcaa ggagtgatgg aagaatttaa tcgtgctgtg
      781 gaagacacac cgattccgca aattcgggcg atgagtgatg agcgaaagcg atcggttcac
      841 gcattagcaa aaatcttgcg aaaagaattt ggtggctaca ccagacaaca ctttgccgat
      901 tacttcaatg attttgtccg acaggcaagt agccggaaag acagatttta ttttggcggg
      961 cttgatggct cggcttgggt agcaaatttc ggctacatca ttcgttcgaa aacgttttat
     1021 aagacttggg aagattcgct atgagccaaa atttgaaaaa tatcacttac gaggttgaat
     1081 atttgctggt tggagcattg ctgaaatccg gtcttaactc gaaagctagg gacgtattga
     1141 gctggttaga gcctgaaatg ttcgctacct ttcaacttgg ggtgatttac gaggctatcc
     1201 gcaagcaggc gttgaaagat aacgtgatcg atatgctgtt actcaatacc gactacggac
     1261 aagattttgc cacgttggca gagataatga aaaacacgat cagcggtgca aacttagacg
     1321 gctatgcaga aaaagtccgg caatatcatc aacgccgaga agcccagcga gtgtttttag
     1381 acgttgcagg tgagttgcaa aatgcccgag acgagcagtt agatgctatc acttcaaccg
     1441 ggttagctca cctaagcaaa ttattacaac gtggcggaaa agtgaaaccg attgatatga
     1501 atgatttgct cgaaggttat ttggaattgt tccaagaacg tgcaaaacca agttttaaag
     1561 agcgtttgtt gtttaccggt atagaagcat tagatgggaa actaggcggt attaacgata
     1621 ccgatatttg cattgtagca ggacgtgccg gtaacggtaa aaccgaaaca gccatcacgt
     1681 ttactaaaaa cattatcgag aataaaggtt cggtgctgtt cttctcgctg gagatgagca
     1741 aagagcagat tatggatagg ctgattgcca gtgcaagcgg tgtaaattca gtaaaacttc
     1801 gcaatccgga aatgatgaat gatgaagatt ttgcccgaat gggaacggcg attcagcctt
     1861 tacaaaatca gcagttgtac attgttgata aaagcggatt aaccgcagaa gagattgtgg
     1921 cgattgcaga gagccatatt caagagtacg gcaaagtgag tgcggtagtg attgattata
     1981 tcggtttggt tcgacacggc aaactagacg gcaaaattaa ccgaacctat caaatcggtg
     2041 aaagtatgga gcggtttaaa actttctgca aaaacaatca cacaccgatg attttattgg
     2101 cacagcttaa ccgcaatgca gatggcagtc gcccaaccaa cgcagatttg cgagacagtg
     2161 gcagtcttga acaagatgca agccaaatca ttatggtgca taaccaacgc aacaaagacg
     2221 gcgagccagc cccctataca gaatggattg ttactaaaaa tcgctttgga gcaaatggca
     2281 cggtttatat gcaattccag cagggtaggt tcgtagaatg cgaccaggca gaagcgcggg
     2341 agtatttcca gccgaaagaa actaaaacat catcaaacaa acgctatgga gcaatgcaat
     2401 gacagatttt gataaaaata taaaatacaa aattatttac gcagatccgc cttggaagta
     2461 taaggatagt ggctgtaatg ggagtgcaga aaaccattac acaacaatga atatcaaaga
     2521 aatatgtgat ttacccgtcc aagatatttc agacaaagat tctattctgt ttttgtgggt
     2581 tacttaccct atgttacctg agggcttaaa gttgattgag gcgtgggggt tcaactataa
     2641 aacaataggg tttcaatggg tgaagacaaa taagaagaat aagaattctt ttttctttgg
     2701 cttgggacga tggactagag gtaataccga atgctgttta attgcaacaa aaggaaagcc
     2761 atcgagggta agcaataaag tgagccaatt aattattgag ccaatacaac atcatagtaa
     2821 aaagcctgac attgtcagag aaaagatagt tgagttgatg ggtgacttgc caagaataga
     2881 gttgttcgcc agaaataaaa cccaaggttg ggatgtttgg ggggatgagg tgtgattgtt
     2941 tcaagctatt gttacccaaa gtgcggtagg gttttattaa aaaggttggc ggttgtgaag
     3001 gataacgaag gttgggacgg tttagatgat tacttataaa tgccccaaat gcaacggaga
     3061 gcttgaagat ttaagtatta atgatgaatg gggttggttt ttagatgagc cgtatcgttg
     3121 caacggacac tatacagggc ggtttccaaa cattagccga gatagcacgt taaatcgcac
     3181 aaaatcctgt gggtacttta gcaaggaaga ggttaagaaa gtaaatggca cacagcgtta
     3241 atgacatcgt aaaagcccac ggcaggcgtt ataaagcaag attgaaaata cagatgataa
     3301 aaatgcaagg aggcgtttta gtccccctta atgagcgtga agctgaagca ttggtatcac
     3361 ttaaaaatgg cgagcaatat gaaattgagg ttattcgcac tcgcaatcca gcctttcatc
     3421 ggaaggtctt cgccttttta aatttttgct ttgaatattg gtcggcagac aaaaccgaat
     3481 gggagttttt tgatgagagg aaacagtttg atactttccg aaaaaatctg actgttctgg
     3541 caggatttaa agaaatcaca tacaccctag atgggcgtat gcgtgtagaa gctcaaagtc
     3601 ttagttacgg aaatatggaa caagacgagt tcgagcaggt ttacaaagca ttgattaatg
     3661 cagctatcaa gcacgttttc aacaatacca aagatgagaa taggataaat cagttgt
//
LOCUS       DANLUT010000184         3707 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLUT010000184 DANLUT010000000
VERSION     DANLUT010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(133..1635)
                     /gene="ppx"
                     /locus_tag="PXB38_002296"
     CDS             complement(133..1635)
                     /gene="ppx"
                     /locus_tag="PXB38_002296"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL5354555.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1831..2160
                     /locus_tag="PXB38_002297"
     CDS             1831..2160
                     /locus_tag="PXB38_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL5354556.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2224..3654)
                     /locus_tag="PXB38_002298"
     CDS             complement(2224..3654)
                     /locus_tag="PXB38_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL5354557.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPVMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1204 a          849 c          648 g         1006 t
ORIGIN      
        1 aacatcaaaa atgagaaggt gatcaaattt taaaaaatac tttttgcaaa aaattagcta
       61 aatttgaccg cttgttcgca aaagggaatg caataaacga aaaaggaagc cttcgcttcc
      121 ttcatttaaa tgttaagaga ccgcaaactg aagatttgta ctcgccaata ttttttgctc
      181 ttcttctaaa tctattgaaa tcagtggatt attcgctaag aagccctgtt caaaggtaag
      241 ttgccaagca ttattttcaa tcaccaaatt caactgtttc ggcactacag tcgcttggcg
      301 agaacggttt aatagcaccg ctagccggaa aacccgtacc aacgttaata catctctaca
      361 ttggtaacgg ttgatactac gaatatccga gcgtttgaat cctttaaggt ggtatcgcat
      421 taataccgat agaagggttt gctgttcaaa atcaaatccc ggtaaatctc ggtttgcaat
      481 caaataagca gaatgacgat gcacattatt gtggtttaca acaataccaa tctcgtgtaa
      541 taaacttgcc catttcagca ttgaacgcag atcttgcact tggcggcggt tcttccaagt
      601 tttgatttgg tcaaataaaa tcaacgccgt atgctccacc ctttttgctt gctgtttatc
      661 taaagcaaat tgctcagcta acgcttctgc agtccgttgg cgaatatccc caacttggaa
      721 acttttctcc aaaccataca ttaccccttc tcttaaagcc ccgttggaat aacgtaatac
      781 atcaattcta aaagtgtgaa aaagtgctaa aagaatagct aagcccggaa ctagcacatc
      841 tgctcgttca tcaagtaagc ctcgtagctt aatctcattt aacgatttaa actctaggca
      901 aatatcaata attttctgta ggcggctttc tgtaattaag ccatcacgat agccattggc
      961 aatcagcact tgatggacgg ttttaatcgt accggaagaa cctaaagcat agtcccaacc
     1021 taactctttg tactcccaca ttaaatcttc gattttttcc attgcaagct gataggcact
     1081 atcaaaacgc tcaatcgtta attccccctg cgggaaaaag cgttttgcaa aactcacaca
     1141 acccatatga cgactttccg ctcgaatcgg ggtaaagtca tcaccaatag tcatttccgt
     1201 tgaaccaccg ccaatatcta ccactaattt tctgccagtt tcgggttggg tatggctaac
     1261 gcccgaataa atcagcctcg cctcttgttg tccggaaata atggaaatcg ggtaaggaaa
     1321 tactgctttc gcttgctcca gaaaagcttg gttattgatt gctctacgta aggtataagt
     1381 gccaaccacc ttcacattct ctgcagagaa cccttctaaa cgttttgcaa ataaagctaa
     1441 acaagcaatg cctctatcaa tcgcatcttg gcttaatact aagttttcat caagcccatc
     1501 tgccagccgt acacgccgtt tcaaacggga aagcacttga atggaaccat ttacgatacg
     1561 ggctacaatc atatgaaagc tgttcgagcc taaatcaata gctgcaaact ctctaggagc
     1621 aatatttgat gacataatga aaccctgtac caataactga aataagtaag atattaccat
     1681 ttttgagccc tagatatcac tacaaattta gcgttattcg cgagaattaa tttaaatcat
     1741 aaaatgtgat aaattttttt gacgaattga cggaaaaaga ataggattta cgagcttact
     1801 taattcaaca ctacatcaag ggagattgat atgtctgaag tgaataaatc attccacgat
     1861 atgctggaat atgtgcatct ttatcgtcta aaaaacaaac tgcaccgtga aacggcggat
     1921 aatgatcgca aaattcgaga taatcagaag cgtgtacttt tattagataa cctaacgcaa
     1981 tatattaccg acgaaatgtc tatcgaggaa gttcgagcga ttatttccaa tatgcgtgat
     2041 gactatgaaa atcgagtaga tgattatatg atccgtaatg cggaactttc caaacaacgc
     2101 cgtgaaatcc gccaaaaaat ggcctctcac aaacaagcac caaccaataa aaaagcataa
     2161 aaagccaagc ggtctgattt gcaaaaaaat atgcaaatca gaccgcttgt gattaagcag
     2221 agattaattc agctttttca ttgcatctgc cacaaattct gcttccggtc ccaaaatcac
     2281 ttggtagcca ttctcgccta atttgatatt accttttgac cctaacgctt tcaatttggt
     2341 ttcgtctgct ttcgccgtat catttaaggt taggcgtaag cgggtaatac aagcatcaat
     2401 gctggtaata ttctctttac cacctaatgc ttcaacaaat ttggcagctt gttcgctacg
     2461 agaaacagta ttcactgttt gtacttcgct atcttcctca cgccccggcg tttttaaatt
     2521 aaaggcttgg atcactactc ggaataatac atagtaaatt actgcgaata cgataccttg
     2581 ggccaataac atataccact gcactgccag cggatttcgt gtcgataaca ctaaatcgac
     2641 caaccctgca ctaaaaccga aaccggcaat ccattccatt gaggctgcaa tataaacaga
     2701 taatccggtt aataatgcgt gaaccacata aagcacaggt gcaacaaaca taaaggcaaa
     2761 ttcaagcggt tccgtaatgc cggtgaagaa cgaagctaaa gcagcagcaa acataataga
     2821 ggctacttgc attttcttag ccggtttcgc actgtggtaa atagctaatg ctgccgcagg
     2881 taagccaaac atcatcaccg ggaagaaacc agcttgatac atacctgtta ctcctatcac
     2941 tgctttgccc tcagccaatg attttgcccc acctaagaag tttggaatat cattaatgcc
     3001 tgcaacatca aaccagaaaa ccgagtttaa tgcgtggtgt aatccaaccg gaattaataa
     3061 acgattaaag aaagcataaa tacctgcccc taacgccccc atatctttga tagattcccc
     3121 aaaagagact aaagcaccaa aaataaccgg ccagacataa agcaagataa atgacaccac
     3181 aatcggcacc aatcgtttac cgctaaagaa agacaatgct ttcggtaact ctacttggta
     3241 gaaacggtta taaatttcgg ctgaaataac ccctactaag atcccgataa attggttgtt
     3301 gattttaccg aatgctgcag gcacttgatc aactgcgatc ccttttagct gagcaacggt
     3361 ccccggagac aacaaagtgg taattactaa atacccgact aaaccggata atgctgctgc
     3421 cccatctttt tcttttgaca taccaaatgc cacacccacg gcaaatagaa tagacatatt
     3481 atcaataatt gccgccccag atttaatcag caatgccgct aattggctat ttgttcccca
     3541 gccgtccgga tcaatccaat agcctatacc catcaataat gctgctgctg gtaatgcagc
     3601 aaccggcacc attaatgcac gcccaatttt ttgtaaatag gttaatgtac tcataaaagc
     3661 ctccaaaaat acctcataat gagtaactga agcatagaaa aaaaccg
//
LOCUS       DANLUT010000185         3627 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLUT010000185 DANLUT010000000
VERSION     DANLUT010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3627
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            60..3627
                     /locus_tag="PXB38_002299"
                     /pseudo
     CDS             60..3627
                     /locus_tag="PXB38_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1293 a          567 c          861 g          906 t
ORIGIN      
        1 tgggtatctt aacctaaatg gagtttttag tcgttatcta ggacagcccc taatgttagt
       61 taggtcaaac agttaaattt accgatccag acagcaatat tgtgacaaca gttaaagata
      121 atgaaatcca atttagctta aattctacgt tatctgttgg taaagacggt aaagatggtc
      181 agccaggtga agccggtaca atcggcgtta aaggccaaga cggcaaagat ggtgtttcaa
      241 ttaaaggtga tgacagtaaa gacggcgtac caggcgaagc atcagttgtt gtaggtcgta
      301 atggtgccga tggtattgac ggtaaagttg gcgtaaatgg taaagacggt gcgtctgttg
      361 tattaaacgg caaagatggc tctatcggct taacaggccc gaaaggtgct gatggtcagc
      421 caggtgcaag cacaaatatt gctgttaaag atggcaaaca aggtgttgat ggcactggta
      481 aagatggctt accaggtgat aacggcgaaa ctcgtatcgt ttacaaaaat ggcgataaag
      541 aagagcaagt tgctaactta aatgatggct tgatctttac tggtaacaat gcagatacgt
      601 taaatcgtca taagctaaac acagtagtta atgttgtggg tgaaggtgtt gataaagcag
      661 catcagctgt atttaaatca gcagcaggta acatcaatgt taaagctgat ggtacagata
      721 agcttgaaat tcaacttaac cgtgagctta aagatttaac aaatgcgaaa tttgttgagt
      781 acaaacaagg tgatgatggt aaagaggttg ttgataatac taaaccatca acagagctta
      841 ctaataaagg tatcactatt acaccagcta atagtgaaaa tggcgcagat gctaaaccag
      901 tatcattaac agataaaggt ttagataacg gtaacaacca aattgttaac gtgaagagcg
      961 gtatcgatgg tgttaacggt caagatggtc aagatggtca accagttaaa tctgtaaatg
     1021 atttaacaga agagcagctt aaagaagttg gcacaaatgc agcgaatatc aatgatgtac
     1081 gtaatgctac tgatgatcta gtgaaaacgg gcttcaagat cactgctgat aattctaaac
     1141 ttgcagatga tgcaaaagaa gatactgtag agcttggtca aacagtagag tatcgtagtg
     1201 aaagcggtaa catcgttaca acggtacacg ataacaagat cgacttcgac ttagcgaata
     1261 acctcaatgt aggtggaaaa gacggtaaag acggcttaac atttaaatca gcggatggtg
     1321 ctcaaggtgt taatggtgaa gatggtgaaa acggcttacc gggtcaaaat ggcacaacac
     1381 gtatcgttta ccaaccgact gataaagacg gtaacccaca aggagatcct gaaactgttg
     1441 caaccttaaa cgatggctta atctttacag gtaataatga gttactaaac cgtcacaagc
     1501 taaacacagt agttaaaatt gtgggtgaag gtgttgataa ggcaacttct gaagcattta
     1561 aatcagcagc aggtaatatc aatgttgttg ctaatgagaa agatcagctt gaaattcagt
     1621 taaaccgtga cttaaaagat cttgctacag caaactttgt tgaatacaaa gaagacggtt
     1681 ctataaatgc agatgcaccg aaaacagttg taaacaacaa tggtttaacg gtaacaccga
     1741 aagacggaaa agatggtaaa gacggtaatg tagtatcgtt aaccaaagac ggtctaaata
     1801 atggtggtaa ccaaattgtt aacgtgaaga gcggtattga tggtattaat ggtcagcctg
     1861 gtaaagatgg taaagctgtt gaatctgtga atgatttaac agatgagcag ctagaaaaag
     1921 taggtactaa tgcagcgaac attaaagatg tacgtaatgc aacggatagc ttaatcaaca
     1981 aaggctttaa cattactgcg gataattctg aactggaaga tggtgctaaa gaagataatg
     2041 tgaaattagg ggaaaccgta aattacactt ctaaagataa aaacatcatc actaccgtaa
     2101 gtaataatgc gatcgacttt gccttaaaca acaatttaac cattggtggt ccgggtaaag
     2161 acggtaaaga tggtgttgat ggtaaggttg gtgttaaagg tgccgatggt acagctggtg
     2221 tgaccttaaa cggaaaagac ggctcaatcg gattaactgg tcctaaaggt caagacggta
     2281 aagatggtgc aagtgcaact atctctgtaa aagacggtgc taaaggcctt gacggtaacg
     2341 acggtaaaga tggcgaaagc aaaacccgta tcgtttatga gaaaccagac ggtacaactg
     2401 aggaagttgc aacactgaac gatggcttaa gattcgtagg tgatgacggt aaagttatca
     2461 ataagaagct aaatgaaacc ttacaaattt caggcggcga taccgattta gaggatttat
     2521 ctgatgataa tatcggcgtt gtgaataaag atggtaagtt aatggtgaaa ttagcaagaa
     2581 acattgactt aacagacgaa ggttcggtaa caatcggtga tacttatatt gacacgaatg
     2641 ttgttggtgt aggtgattcg gcattaaccg gtgatagctt aacagtaggt ggcgataatt
     2701 cgattactgt tgacggtaat aaaggtacaa tcggtggctt aaccaataag acatttgatc
     2761 caaataactt tactagtggt caagcagcaa cagaagacca gttaaaacag gtttatgatg
     2821 tagcgaactc tggttgggat attgcagcaa atggcaataa cagcaccaat gttggtccta
     2881 aaggtaaagt ttcatttaat aatgaagacg gtaatatcat cattactaaa gaaacgactg
     2941 acaacaatgt aacctttgca ttaaataacg atttaactat cggtggtccg ggtaaagatg
     3001 gcacaatcgg tatcaacggt aaagatggtt cgaatggcac tatgactttc gagcaaggta
     3061 aaccgggtgt tgatggtaaa gatggcgaaa cgaagactcg tatcgtttat gaaaccaaag
     3121 acaaagacgg caaccctgtt aaagaagaag tagcaacctt aaacgatggc ttaaaattcg
     3181 ttggtgatga tggtaaagtc attactaaga aactaaacga aacgttaagt attaccggtg
     3241 gtgagaaaga tgcaactaag ctctcagatg ctaataatat cggtgtagta aataacaacg
     3301 gtactttaac ggttaaatta gcgaaagaca ttgatttaac gaaagatggt tctgtgacta
     3361 ttggtgatac tacggtaaat aatgatggtt taactatcaa agatggccca agtgtaacta
     3421 aagccggtat caatgcaggc gataagaaaa tcactaacgt tcaagacggt gaaatttctg
     3481 caaccagcaa agatgcggta aacggtagcc agttatatca agtgcaagaa gttgctaacg
     3541 caggttggaa cttaacagca aatggtaaag acaaaggcaa cgttaaacca ggagcaacag
     3601 ttgatctaaa caacaaagac ggtaaca
//
LOCUS       DANLUT010000186         3593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLUT010000186 DANLUT010000000
VERSION     DANLUT010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            3..1979
                     /gene="cpdB"
                     /locus_tag="PXB38_002300"
     CDS             3..1979
                     /gene="cpdB"
                     /locus_tag="PXB38_002300"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL5354558.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2052..3530)
                     /locus_tag="PXB38_002301"
     CDS             complement(2052..3530)
                     /locus_tag="PXB38_002301"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL5354559.1"
                     /translation="MDSILGKKINSTAIPSLLCDFYKTSHRIQYPEGSQFLYSTFTPR
                     SNIYAPFVTRVVSFGFQAFILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSG
                     EHIAQLHQLGYLPIRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQ
                     PITSASIAFAYRKALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSF
                     LGTDTIPAISFVTAYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLS
                     IVADTTDFWHNITVNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNSSSPVEHERK
                     GLIECLWDIFGGSINQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVF
                     GVGAQTYQRNTRDTLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDH
                     YVDELTALDDFSDDLLEVVFENGKLVKSTNFDEIRQNIAQQF"
BASE COUNT         1205 a          677 c          718 g          993 t
ORIGIN      
        1 ttatgttaaa tagaagaaaa tttatccagc ttggtgcaac tgcaatgctt gtattgggga
       61 cacaaccgtc tgcatttgca caaacagcca aaaataaagc tggcttgcgt gtcatcgcca
      121 ctacggatat tcacggtttc ttaactgatt ttgattatta caaagatgct ccaacagaaa
      181 agtttggttt tacccgtacg gcaagcctaa ttaaacaagc tagagcagaa gttaaaaaca
      241 gtgtgttagt cgataatggt gacttaattc aaggtaatcc tatttctgac taccagtcaa
      301 ccaaaggtgc aaaagagggc aaacctgaac cttcgattat ggcattaaat gcgatgcaat
      361 atgaagtcgg aacgctggga aatcatgaat ttaactacgg tttaagctat ttagataatg
      421 ctattaagca agcaaaattc cctattgtca atgcaaacat tgtgaagccg gggacagatg
      481 aaccattctt tacaccttat gttattcaac aaaaagaaat tgtagatgaa aaagggaata
      541 agcataccat taagattggt tatatcggtt ttgtaccacc acaagtgatg atttgggata
      601 aagctaatct tgaaggaaaa gttgaagctc gagatattgt gaagaccgca caaaaatatg
      661 tgcctatagt aaaaaaagaa ggggcagata ttgtcgttgc attggcacat accggccctt
      721 cagacgaacc ctataaagaa ggcgctgaga actgtgcgtt ttatctagct gatgtaaaag
      781 gtattgatgc agttattttc gggcattcac atcgcctgtt cccaaataaa gaatttgcaa
      841 attcaccaaa tgccgatatt gcaaaaggaa caatgaaagg cgtaccggaa agtatggctg
      901 gctactgggg aaataacatc agtgtgattg atttaagctt ggccgaaaac gatggtaaat
      961 ggggcgttgt ggacggtaga gcagagttgc gtccaattta taatacggaa gagaaaaaag
     1021 caaccgttga gaaccaccct gaaatcgttg cattattaaa agaaacccat gaagcaaccc
     1081 gtcaatttgt gtctcaacct atcggtaaag caactgataa tatgtatagt taccttgcgt
     1141 tagttcaaga tgaccctacc attcaaattg tgaaccaagc tcaaaaagcg tatgtagaaa
     1201 atgtggtaaa aggcttgccg gagcttgcag gattaccaat tctaagtgcc ggagcaccgt
     1261 ttaaagccgg tggacgtaaa aatgacccga caggctatac cgaagtcgat aaaggcgaat
     1321 taactttccg caatgcggca gacttatacc tttacccaaa taccttagtg gtggttaaag
     1381 caacaggagc agaattaaaa gagtggttag agtgcagtgc aggaatgttc aaacaaattg
     1441 atgtcgcttc ggataaaccg caatatttac tggattggac aggtttccgc acctataact
     1501 acgatgtaat tgacggtgtc agctatcaat ttgatataac ccaaccggct cgttatgacg
     1561 gcgagtgcaa attgatcaac cctaattcgc accgtgtggt gaacttaacc tttgacggca
     1621 aaccggttga tcctaaacaa gaattcttaa ttgccaccaa caattaccgt gcttatggag
     1681 caaaattccc gggaacaggc gataaacata ttgtgttcgc cgcaccggac gaaaaccgcc
     1741 aagtgttagc gaattatatt accaccgaaa gtaaagctca cgggcaggta agtccgaaag
     1801 cggataacaa ctggcgtatt gcaccaatta gctcaaatgc aaaactggat attcgttttg
     1861 aaacctctcc aacagataaa gctaaagctt tcattaagga aaatgcacaa tatccgatgg
     1921 agtatatcga aaacgatgaa accggcttcg cagtttaccg tattgattta accaaataat
     1981 cagagctaaa tacaagcggt ctaatttgca aaaaaattaa caaatttgac cgcttgtttc
     2041 attccatttt tctaaaattg ttgtgctata ttttgccgaa tttcatcaaa attggtcgat
     2101 ttgaccaact taccattttc aaaaaccacc tctaaaagat catctgaaaa atcatccagt
     2161 gcggttagct cgtcaacata atgatcataa gagattactt ttactcgccc tttttgcgat
     2221 ttttttaagc cgttatcggt tttaggagct ttgaaaattg ccttttcgac accgttaatt
     2281 gtaattgaag tcgctttgat tgcaaaaccc agcgtatcac gagtattgcg ttgataagtt
     2341 tgagccccaa cgccaaacac aatattgctg gaagcaaaac cttttgccgt taagccctct
     2401 aaaatccgta tcattttatc ataagtgacg ccgtcaccat aaattgcccc aatatgcgga
     2461 ttaagcactt tataaccttt ttggttaata ctaccaccaa aaatatccca caaacactca
     2521 atcagacctt tgcgttcgtg ttcaacaggg gaggaactgt taccgcaaat aattgtaaaa
     2581 aaatcaccgc tatcagggcg gataaccaat tttgctgatt ccggtcgagc taaaatttct
     2641 tgttttaata atggcaaatt aacggtgatg ttatgccaga aatcggttgt atctgccaca
     2701 atagatagca tattatttgg atattttgcc attaaataac ggaaagtcgg cagctcatca
     2761 acaccgtgtg aactcatcac cgaatgttct gatgccggaa tagatgtacc gattaaatgt
     2821 tgagaaccat aataggctgt cacgaatgaa attgcaggaa tggtatctgt gcctaaaaat
     2881 gaggttagat gcccggcacc ggagctttct gctgattcta aggaactcat tccacgcata
     2941 gagaaatcgt gtgcctggaa gggtagatgg ctattatcat cacaggtttg ctctgaaaat
     3001 tcggctagag ccttacgata agcaaatgca atggaagctg atgtaatagg ctgccataat
     3061 gacacattaa tcagggtttc caaataatta gtcagccaaa aaaagcttga gtgagtgttt
     3121 tcaattgtca ttaaaggaac tttcactgca acagattttc cttctggaat agctttaatt
     3181 ctgataggta agtaaccgag ctgatgcaat tgtgcaatat gttcgccaga gtcctcaata
     3241 ttcaatgtgt cagaaataaa ttgagtatat tcagaaacaa cgtcatgttg tgagcgagaa
     3301 aaaaaattat cgttaaaata atgaatcaag tattttaaaa taaatgcctg aaagccaaat
     3361 gatacaacac gtgtaacaaa tggagcataa atattactac gaggtgtgaa tgtactatat
     3421 aaaaactgag aaccttcagg atattgaatt cgatgtgaag ttttataaaa atcacataat
     3481 agtgatggta ttgcagttga attaattttt ttacccaaaa tactatccat tttcttaaag
     3541 tccttattta acttttaagg ctaaaggtta tcataactta ccataaaatg aaa
//
LOCUS       DANLUT010000187         3516 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLUT010000187 DANLUT010000000
VERSION     DANLUT010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3516
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            26..1489
                     /locus_tag="PXB38_002302"
     CDS             26..1489
                     /locus_tag="PXB38_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5354560.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDSLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            1479..1784
                     /locus_tag="PXB38_002303"
     CDS             1479..1784
                     /locus_tag="PXB38_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL5354561.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            1784..2233
                     /gene="nrdR"
                     /locus_tag="PXB38_002304"
     CDS             1784..2233
                     /gene="nrdR"
                     /locus_tag="PXB38_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL5354562.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(2307..3176)
                     /locus_tag="PXB38_002305"
                     /pseudo
     CDS             complement(2307..3176)
                     /locus_tag="PXB38_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991647.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(3238..>3516)
                     /locus_tag="PXB38_002306"
     CDS             complement(3238..>3516)
                     /locus_tag="PXB38_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HDL5354563.1"
                     /translation="DSWVYTDTYRSYDALDVSEFHHERINHSELFAEKQNHINGIENF
                     WNQAKRVLRKYNGINRKNFPLFLKECEFRFNFGTPKEQLKTLRKWCEI"
BASE COUNT         1050 a          717 c          787 g          962 t
ORIGIN      
        1 tacgtcatta tagcaagaga aaaatatggc agaatatagc ggaacaaccc aagagaagat
       61 gaaagataag caggttgagc aaattaatat ctcaccacat tcgattgagg cagagcaagc
      121 ggtgcttggt ggcattatgc tcagtaatga tcactgggat aatgttgctg agcgtgtaca
      181 accgcacgat ttttacaact atgcgcatcg aattattttt gaacaaatgg cggagttggt
      241 gcgccacaat aaaccgattg atattattac gctggatcaa gccttaaaag acaaaggggt
      301 gctgcaagat gtaggaggtt ttgcctattt agccgagctt tctaaaaata ccccgagtgc
      361 agcaaatatt ttagcctatg cggatattgt gcgagatcgt tccgatttaa gaagtgtaat
      421 cagtgccggc aatcaaattg cggaaatggg ctacaaaacg aaagggcgta actccaagga
      481 agtgttagac gaagcagagc gaattgtgtt tgaaattgca gaaaaacgca ataatgccaa
      541 tgaagggcca caacgtattg acgatatttt acttaaaaca ctcgcccgaa tggattcgct
      601 atctaaaaat cgccataacg gcggagttac tggtgtttct accgggtttg ttgatctcaa
      661 taaaaaaacc gcagggttac agccttcgga tttaatcatt gtggcagccc gtccttcaat
      721 ggggaaaact acttttgcaa tgaacttatg tgaaaatgct tcattagtgg atattgaaga
      781 taaagatgat ttagacgaac agggtaatcc gaagaaaaaa ccggcaaagc cagtgctaat
      841 tttcagcctg gagatgccgg cagaccaaat tatgatgcgt atgcttgcct cactttctcg
      901 ggtcgatcaa accaagatcc gaaccggtca gatttcagat gatgaagaca ctgctaaaat
      961 ctccagcaca atggcaattt tacaagaacg taataatatc tatattgatg atagctccgg
     1021 tttaacaccg accgaattac gttctcgagc gagacggatt tatcgtgaaa atggcggatt
     1081 aagcttgatt atggtggact atctccaatt aatgcgagcg ccgggatttg cagataatcg
     1141 tactttagaa atcgcagaaa tttcccgttc tttaaaggca ctagcgaaag aattagaagt
     1201 gccagtagtc gctctttctc agctaaaccg gagtttggaa caacgtgccg ataaacgtcc
     1261 ggtaaactcg gatttgcgtg agtcaggttc tattgagcaa gatgcggact taattatgtt
     1321 tatttatcgt gatgaggtct ataacgacaa ttccgatctg aaaggcattg cggaaattat
     1381 tatcggaaaa caacgtaacg gcccgattgg tcgggtgcgt ttaacgttcc aagggcagta
     1441 ttcccgtttt gataattaca caggagggca ttatgatgat gaatactaaa ccaactcagc
     1501 caatcacact ttgtgcgatt tatcgcagta aggcaaaaga aggaatgtat ttatatgtgc
     1561 ctaagcgtga ccaatttgag caagtaccgg aaacattacg ccagttattt ggtaagcctg
     1621 aatttgtgat gatgtttaat ttaaccggtg aaaagccatt ggtgcgtgct aaaaacgaag
     1681 aagtgttaca attacttata gagcaaggct actatttgca aatgccacct ccgccggaga
     1741 atttgcataa agcctttatc gcacaacaga aaggggaaaa ataatgcgct gcccattttg
     1801 ttccactgaa gaaactaaag tgatcgattc acggcttgca gcaagcggtt atcaaattcg
     1861 ccgccgccgt gaatgtataa gctgtaaaga acgttttact acctttgaat cggccgaatt
     1921 agttgtgcct tacgtgatca aaaataatgg tagccgagag ccgtttgatg ccgaaaaatt
     1981 aagaacaggg ttaagacgtg cattaaataa acgccctgtc agtgctgatg atgtcgaaaa
     2041 agcaattagc caaatcatta ttcagctgca agcgatgggc gaacgagaag tgccgagtcg
     2101 ccatatcggt acattggcaa tgaacgcact taaacaatta gacaaagtag catatatccg
     2161 ctttgcctct atttatttaa gctttagtga tattgaagag ttcattaaag aaattgaaaa
     2221 attaaaagag tagttgcaaa aaaacataaa aaaatgaccg cttgtgagtt taaaatccac
     2281 aagcggtcat ttttctttaa aaatactcaa ttagctttta cttgttccaa cacaaaccct
     2341 acaaacgccc gcacaatgct agacggataa cgatgggcgg cataaatcat cgtcaaatca
     2401 aatttggggt tttctatctc gcccaagact tccaccaagc cattttctgc cacgagtcta
     2461 tccaccatgc tgtcggcaag cagcgccact gctttgccct gttttgccat atattcaatg
     2521 gcatagctgt cattgctggc aaaaagatag ggaatttcca ccgcttgtct gccagtgcca
     2581 agtgtaatga cgcttgcttc attttttgcc caagcggcaa tggggaaatt tttcaaatct
     2641 ttgatggtat tgggcgtacc caatcgtgcc aataaatcag ggtgtgccac ccatttactg
     2701 ccgatttgcc ccactttttt ggcgataaac tgttcgccgt gtaactgccc aatccgaaat
     2761 gctacatcaa tgccgtctgc cgacaaatca agcagacggt cggtcagcgt gcaatgcacc
     2821 tgtacctgtg ggtaggctgc ctgaaaatca gctatccacg ccaaaacagg ctcgcaggca
     2881 gggcttgccg acaggcgtaa tttgcccttt aaattgcctt gctcttcaaa caacacttct
     2941 ttggcagtgg caagctgttc aatggacaaa tgcacctgtt catacaggcg ttgccctgcc
     3001 attgtgggtt taacgcctga tttttagtgg tcaaagagtt gaatgttaag ctctttttcc
     3061 aaatcggcaa tttgacggct aatggttgca atcggtacat tgagtcgctc ggaggctttg
     3121 gagagactgc cgtgctggat aacggcgaca aagaggcgga gggtgttgag gttcattgtt
     3181 tttctcccca atgttcaatt tcttgaataa aatgtttggg gctgtagtag attagcccta
     3241 aatctcacac cattttcgca acgttttgag ctgttctttt ggtgtaccaa agttaaaccg
     3301 aaattcacat tccttcaaga ataaagggaa attttttcgg ttaattccgt tatattttcg
     3361 gagtactcgc ttcgcttgat tccaaaaatt ttcaatgcca ttgatatggt tttgtttctc
     3421 cgcaaacagt tcggaatggt tgattcgctc gtgatgaaat tcgctcacat caagggcatc
     3481 atagctacga taggtatccg tataaaccca gctgtc
//
LOCUS       DANLUT010000188         3502 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLUT010000188 DANLUT010000000
VERSION     DANLUT010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            179..784
                     /locus_tag="PXB38_002307"
     CDS             179..784
                     /locus_tag="PXB38_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5354564.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            784..1119
                     /locus_tag="PXB38_002308"
     CDS             784..1119
                     /locus_tag="PXB38_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5354565.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNHNKLICTLDFTLKHRKI
                     SIKGMRFKL"
     gene            1116..2033
                     /locus_tag="PXB38_002309"
     CDS             1116..2033
                     /locus_tag="PXB38_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL5354566.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERSVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIGGNYNVKRL
                     VVQPEDLTKNPPIQEELEPDDDFRQRVQLKLESISGAGPRKAYTYHALSSHGRIADVS
                     VISPKPAYVTVTVTSRVGTGQADDEIINAVTAALNDEDVRPIADRVTVQGAEIVEYTI
                     EAVLKIYKGPEKEPILKAAQANLESYIQHTKRIGRDVTHSGIYAALHVAGVQNVQIKA
                     PKNDLVLTPYQAGYCTGTVLSIEASDEYS"
     gene            2020..2559
                     /locus_tag="PXB38_002310"
     CDS             2020..2559
                     /locus_tag="PXB38_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL5354567.1"
                     /translation="MNTVKPLLPSGSSLLEKRAAECLQETVTNRIDFENLINPHKCPV
                     RLLPYLAWALSVDYWEEYWSEQQKRQAIIDSYNNHQRKGTVGAVRRIVESLGYDFEIR
                     EWFKEKRERQAGTFRIFVELKDKGISEKIYQELERLLEDAKPVSRHITELAVSATSRG
                     KANIFSAAHSGEIILIKPR"
     gene            2562..>3502
                     /locus_tag="PXB38_002311"
     CDS             2562..>3502
                     /locus_tag="PXB38_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354568.1"
                     /translation="MTTQFYSLITKYGESVIAQAVANNTPVPLKTMAIGDGNGTPTTP
                     SESQTTLINEVYRAEITDLLQDSETPNQVIAELLVPETVGGFTVREVGIYDDQNKLVA
                     VANCPENYKPVLEQGSGKVQYYRIVLRVSSSDSVTLSLNNNIVYATRLEFNRFVNDLS
                     KPDGFKLVGECESIAQLRTIEPTEDQQRILVKSYHAGKNLGGGMFYADFADTTTVDNA
                     GTVIVTAGGKRWKRLYSTLNIFDFGVSLDSVNNDAIKRLQAWQEPVLGLGNVIPASSR
                     IVPASHISQVAYRFNGIDYLSEDYYKADLSQITRTGY"
BASE COUNT         1094 a          733 c          808 g          867 t
ORIGIN      
        1 taattatctt agctatcatt cacagtagcc gactttaccc acgcccataa tcagtaagcg
       61 acctaatcgg tcgctttttc tttgcctgtt aaaacccatt tcacacctcg catttatacc
      121 caaagccttt cgccttttgc aaaatatcct cattttttaa ccgcttgtaa ttgtaaaaat
      181 gagtgagcca aaccacgccg aacaaatccg ccgtttagac aatattatcc gacttggcac
      241 tattgccgag gtggatttaa ccacagcgac tgcacgggtc aattcgggcg gtattacgac
      301 cgatttctta ccgtggctga cttttcgtgc cggcacatcg caaacgtggt cagctccaac
      361 agttggcgag caatgcgtgg tgttaagcgt gagtggtgaa tttaccacag gcgtgatctt
      421 atttgggatt tacacccaaa acgccccgag ccaatccgcc gatgagcatc tattccgctt
      481 ttcggacggt gcagaaatca gctacaacac cgcaagcggt caattaaccg taaaaaattg
      541 caaagtggtg attgtgcagg cgacagaatc tatcacgctc gacacgccca cggttaaggc
      601 cacaaaaaat gttgtgattg ggggcaacct ctccgtgaaa ggcacaacct catcgcaagg
      661 tgcaatcagc acacaagggg cggtaacagc aaaaggcgat gtatcagggg cgggaatcag
      721 tttaggcagc caccatcaca ttgagcaagg tgacggcaga ccaactagcg gagcaaaacc
      781 ataatgaacc gagaaacagg cgaacagctt gaagacgaag tagagcatat caagcagtct
      841 atcaaagata ttttgctgac ggcaaaaggc agtcgggtaa tgcggcgaac ctatggcagt
      901 aatctctaca agctaactga taaaccgatt gccgcaagtc tgattatgca actctccgct
      961 gcgtgcgtga tggcgttgca gcaatgggag ccacgtatag cgatcacccg atttaaagtg
     1021 gaatttgccg aagataacca caataagctg atttgcacct tagattttac ccttaagcac
     1081 cgaaaaatca gcatcaaagg aatgcgtttt aaactatgag cgaaattgtc gatttatcca
     1141 aactccccgc cccaaaagtg ctggaagaat tggactatga aaccttatta gcagagcgga
     1201 aagccaagtt tttatcgctt taccccgaaa gcgaaagatc ggtaatggct gcacggttag
     1261 cgttggagtc tgagcctatc accaagttac tacaagaaaa ttgctatttg cagctactcg
     1321 aacgccaacg cattaatagt gcggctcaag ccacaatgct tgcttatgct accggtacgg
     1381 atttagatgt gattgggggg aattacaatg ttaaaagatt agtggtacag cctgaagatt
     1441 taactaaaaa ccccccgata caggaagagc tagagccaga cgatgatttt aggcaacgtg
     1501 tgcaactcaa acttgaaagc atttcaggtg caggccctag aaaagcttat acctatcacg
     1561 cattatcatc acacggcaga attgccgatg tgtcggttat atcacctaag cctgcttatg
     1621 tgactgtgac agttacctct agggtaggca cgggacaagc agatgatgaa attattaatg
     1681 cggttaccgc agcacttaac gatgaagatg tgagaccgat tgcagataga gtaacagtac
     1741 aaggtgcgga gatcgtggaa tatacgattg aggcagtgct taaaatttat aaaggaccgg
     1801 aaaaagagcc tatcctgaaa gcggctcaag caaatcttga atcctatatc cagcatacaa
     1861 agcgaattgg tagagatgtg actcattccg gtatttatgc tgctttgcac gttgccggtg
     1921 tgcagaatgt acaaatcaaa gcaccaaaaa acgatttagt cttaactcca tatcaagcag
     1981 gatattgcac cggcacagta ttaagcattg aggcaagcga tgaatacagt taagccattg
     2041 ttaccatcag gctcaagcct actcgaaaaa cgagcagcag aatgtttaca agaaacagta
     2101 acaaaccgaa ttgattttga aaatttaata aaccctcaca aatgccccgt aaggctgttg
     2161 ccttatctag cttgggcgtt atcggttgat tactgggagg aatactggag tgagcagcaa
     2221 aaacgacaag ctattattga ctcttacaat aaccaccaac ggaaagggac agtaggagca
     2281 gtaagaagaa ttgttgaatc tctcggttat gattttgaaa ttcgagagtg gtttaaagaa
     2341 aagcgagaaa gacaagccgg aacttttaga atttttgttg aattaaaaga taagggcatt
     2401 agcgagaaaa tctaccaaga attagaacgg ttacttgaag atgcgaaacc agtatcacgc
     2461 catattactg agttagctgt atcagctacc tcaagaggaa aagcgaatat ttttagtgcg
     2521 gcacatagtg gcgaaatcat tttaattaaa ccgagataga tatgacaaca cagttttata
     2581 gcttaatcac aaaatatggc gagagcgtta ttgctcaagc tgttgcgaat aatacaccag
     2641 tgccattgaa aacaatggcg attggtgatg gtaacggcac accaactacg ccaagtgaga
     2701 gtcaaactac actcattaat gaggtttacc gagctgaaat cacggatttg ttgcaagata
     2761 gcgaaacacc taatcaggta attgcagaat tacttgtgcc ggaaacagta ggcggcttta
     2821 ccgttcgaga ggtcggtatt tatgatgacc aaaacaaact tgttgcggtt gccaactgcc
     2881 ctgaaaatta taagccggtg ttagagcaag gtagtggcaa agtgcaatac taccgtattg
     2941 tgctaagagt tagcagtagt gattcggtta cgttgtcact aaataataat attgtttacg
     3001 ccacaaggct tgagtttaat cgatttgtga atgaccttag caagccagat ggtttcaagt
     3061 tagttggtga atgtgaatct attgcccaac tacgcaccat cgagccaaca gaagaccagc
     3121 aacgtatttt ggttaaatcc taccacgccg gtaagaacct tggtggaggg atgttttatg
     3181 cggattttgc agatacaact accgtagaca atgccggcac agtgattgtg actgctggtg
     3241 gcaaacgatg gaaacgactt tattcaacac tcaatatctt tgactttgga gtcagcttag
     3301 acagcgtgaa taacgatgcc atcaagcgct tgcaagcgtg gcaagagccg gttttagggt
     3361 tggggaatgt gattccggca agttcaagaa ttgtgccggc tagccatatc tcacaagtag
     3421 cttatagatt taacggtatt gattacttgt ctgaggatta ttataaggcg gacctatcac
     3481 aaattacccg aacaggttat ta
//
LOCUS       DANLUT010000189         3486 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLUT010000189 DANLUT010000000
VERSION     DANLUT010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            79..1587
                     /locus_tag="PXB38_002312"
     CDS             79..1587
                     /locus_tag="PXB38_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5354569.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLSFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPLLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTSSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1587..1685
                     /locus_tag="PXB38_002313"
     CDS             1587..1685
                     /locus_tag="PXB38_002313"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL5354570.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1733..1996)
                     /locus_tag="PXB38_002314"
     CDS             complement(1733..1996)
                     /locus_tag="PXB38_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL5354571.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2156..>3486
                     /gene="srmB"
                     /locus_tag="PXB38_002315"
     CDS             2156..>3486
                     /gene="srmB"
                     /locus_tag="PXB38_002315"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL5354572.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRCKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
BASE COUNT          959 a          710 c          829 g          988 t
ORIGIN      
        1 ccgcacttaa agtgtgatta atttacattt aactcaattc ttttttatat aaaactttat
       61 cagtttgagg tatttaccgt gtctaatcaa tcatcaaacg caccgcaaag agaaacgttc
      121 tccggacgtg gtgcatttat tatggcggct attggttccg ctgtcggctt agggaacatc
      181 tggcgtttcc cttatactac ttatgaaaac ggcggtgggg cttttattct gccgtatatc
      241 attgcccttt tgaccgcagg tttaccgctg ctgttcttag attattctat cgggcataaa
      301 tatcgtggtg gtgcaccgct ctctttccgc cgtttcagct cgaaatttga aaccttcggt
      361 tggtggcaag tgctgatcaa cgtgatcatc gggatttatt atgcggtggt actcggctgg
      421 gcagcaagtt acacctactt ctcattcagc ggagcgtggg gcgataaacc ggtggatttc
      481 tttatcggtg aattcttaaa aatgggcgat attactcaag gcgtgagctt tgaatttgtc
      541 ggtatggtta cagggccgtt aattgcggta tggctgattg ctattgctgt gttggctatg
      601 gggatcaaaa aagggatttc tgctgcctca aacctgctaa tgccgctgtt gatcgtgatg
      661 ttcttagtgt tggtcggcta ttcattaacc ctaccgggtg ctgcgaaagg cttagatgcg
      721 ttatttaccc caaactggga aaaattggct gatccaagtg tgtggattgc cgcttacggt
      781 caaatcttct tctcactctc tatctgcttc gggattatga ttacctatgc ttcatacctg
      841 aaaaaagaaa ccgatttaac cagttcaggc ttagtggtgg gttttgcgaa cagtggtttt
      901 gaattattag cgggtattgg cgtatttgcg gcactcggct ttatggcaac ggctgcaggg
      961 caagaagtga acgaggtagc aaaaggcggt atcggcctgg cattcttcgc tttcccaacc
     1021 attattaacc aagcaccaat gggggcatta gttggcgtgc tgttctttgg ttcactcacc
     1081 tttgcggcat taacctcatt tatctcggta attgaagtga ttatttcagc ggtgcaagac
     1141 aaactcaatt caggtcgtgt gaaagccacg ctactagtcg gcattccgat gatggtggta
     1201 tctgtcttgc tattcggtac aaccaccggt ttaccaatgc ttgatgtgat ggataaattc
     1261 gtaaaccaat tcggtattgt tgcggtggcg tttgtttcct tgattgcgat tgtcaccagc
     1321 gagaaattaa gtacccttga aaaacacctg aacgaagttt cttcattcaa agtcggcttt
     1381 atctggcgtt tatgtatcgt tattacctcc ggcgtactgg catttatgtt attcagcgaa
     1441 atcgccaaag tgtatcgtga aggttatgaa ggctacccaa gctggtttgt aaacaccttc
     1501 ggctggggaa tggcaatcgg cttagtggtg gtggcttatt tgctatcaaa aatggcgtgg
     1561 aaaaatgaac caaaaggaga tgagtaatga gttcagcagc aattattacc atggtggtgg
     1621 caatgacgat tatctggggc ggtttacttt ttgcgattaa acgtctgccg aaagaagaac
     1681 aataatttgc aaatttttgt ataaaaaagc ccgcttgtta gcgggctttt ggctatacgg
     1741 taatcccaaa tttctcttcc acaaaggctt ggaaatcggt gcaaccgcca acgtggttat
     1801 tatccacaaa aatttgtggc acagttgcaa ccggcttgcc aacacgaggc tctaggtctt
     1861 gttttgaaat attttcagcg atcatatcaa taaatttaaa atcaaaatcg cttaattctt
     1921 gtttcatttt ctcggctaat gtttttgcac gcacgcagta tgggcaagat aaacgtccat
     1981 aaatttcaac aaacatataa tgttccttct ataaagtaaa agtgagcgaa ttgtccgtta
     2041 aacggctctg tgtaagtgta acaatttttt cagcctttta ggataaattt cttcaccatc
     2101 acggcaagca gttaatgtga tatactgggg caaatttaca agtagagaaa cagagatgac
     2161 ccaattaatg acgtttgagg agcttgattt aagccctcaa ttacttaaag ccttagcaca
     2221 caaaggctat aaccgcccaa ccgctattca acaagccacg attccggctg cgttagaagg
     2281 acgtgatctg ctcggttcag cccctaccgg taccggcaaa accgccgctt ttttactgcc
     2341 ggcaattcag catttattag attatcctcg ctgcaaacca ggggctcctc gcattttaat
     2401 tcttacccca acccgagagc tggcaatgca ggtggcggag caagcccaag cactggctaa
     2461 atttactcag ttgagcattg cgactattac cggtggggtg gcgtatcaaa atcacggtga
     2521 agtctttaat aaaaatcaag atattgtggt tgctaccccg ggtcgtttaa tgcaatacat
     2581 taaagaggaa aattttgact gccgagcggt ggaagtgctg atttttgatg aagcagatag
     2641 aatgttgcaa atgggcttcg ggcaagatgc ggagaaaatt gcggcagaaa cccgttggcg
     2701 taagcatact tggttgtttt cagcgaccct cgagggcgag ttattagagg attttgccga
     2761 gcgattatta aatgatccga ttaaagtcga tgccgaacca agtcgccgtg agcgtaaaaa
     2821 aattcagcaa tggtattacc acgccgataa tgtagagcat aaaaccaaat tattagctcg
     2881 tattatcagc gaattttcgg tggaaagagc gattgtgttt gtccgccgcc gagaagatgt
     2941 gcgagaactc agcgaaacct tgcgtaagcg gggaattcgt tctacttatc tcgaaggtga
     3001 aatggctcag acccaacgta accaagctat taaccgttta aaagaaggcg tagtgaatgt
     3061 gttagtggca accgatgtgg cggctcgagg cattgatata gacgatattg atttcgtgct
     3121 gaactacgat ttaccttata gtgcggatac ttacttgcac cgtattgggc gtactgctcg
     3181 tgctggcaaa aaaggttcgg caatttcatt ggtggaagct cacgattata aattactcgg
     3241 caaaattaaa cgttacaccg aagaagtact aaaacctcgc attatcgagg gcttagagcc
     3301 tcgcaccaaa gccccgaaag atggcgagct aaatgtgacc agcaagaaag aaaaagcacg
     3361 cattaagaag aaaaaagagg cgaaaaaaga agcggcaaaa ccaaaagtaa aagtccgcca
     3421 caaagatacc aaaaatatcg gtaaacggcg taaaccaagt agtgaatcgg ctgcggttaa
     3481 acaggc
//
LOCUS       DANLUT010000190         3426 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLUT010000190 DANLUT010000000
VERSION     DANLUT010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3426
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(223..621)
                     /gene="mutT"
                     /locus_tag="PXB38_002316"
     CDS             complement(223..621)
                     /gene="mutT"
                     /locus_tag="PXB38_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL5354573.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
     gene            complement(708..3419)
                     /gene="secA"
                     /locus_tag="PXB38_002317"
     CDS             complement(708..3419)
                     /gene="secA"
                     /locus_tag="PXB38_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL5354574.1"
                     /translation="MTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALKDKTAE
                     FKQRLADGASLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEMRTGEG
                     KTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPGLPSDA
                     KRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDEARTPL
                     IISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTERGMVK
                     VEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIVIIDEH
                     TGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTGTADTE
                     AFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIEREQPVLVG
                     TASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAGRGTDI
                     VLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRRIDNQL
                     RGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLTKVIAS
                     AQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQDVFEST
                     INQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERILNIAIA
                     EYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKDPKQEY
                     KKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQATDSA
                     AGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
BASE COUNT          929 a          802 c          610 g         1085 t
ORIGIN      
        1 tttattacca ttttttaatg acgctcctca ataatataag ttgtgctaaa tccgatacaa
       61 tcattattta ttaggtatac caagcggtca tttttactaa aactctgcaa aaaagaaagg
      121 gcgaatagta attcgcccct acatcagctt tataaatgtc tcaatagcgt atccaataaa
      181 aaaccgcagc taaattactt tagatacagt tctcaataca aattatgcgt gttcttttaa
      241 gcgtttaatt aattgggcat ttgccggtgg gaaagctccc tcatctaaat ccgattgtgc
      301 gatccaaaaa ccttcttgcc cttctcttcc gtaaggttca tttacccact cttccaccaa
      361 ataaaagaaa aattcaatga tttttgttgg atattcaaag caaaaatttt catacggaaa
      421 agcgcttaac acttgaatac caatttcttc ttctaattct cgttttagtg cttcttcagg
      481 ggtttcattg ggatcgactt tccccccggg aaattcaaga gactgagcaa aatcttgccc
      541 ttctaaacgt tgggttaagt aaatttgccc aaattcgtta cgaataatcc ctgctgagac
      601 ttgaataatc ggttttgaca tagtttcctt cactctttct ataaattcaa gcggtcatat
      661 taagcagaaa atttgcaaat tcctgactga atatgaccgc ttgttaatta cgaatatctc
      721 gctttgttac catggcaatg cttatatttt ttgcccgaac cacaagggca agggtcattt
      781 cgaccaatat ttaagtttgc caactcttct tcacttaagc tctctgcgct attttcttct
      841 ctactaccag cagcagaatc ggtagcttgt gtaactggcg tacttgcagc gtccatttca
      901 gcttgctggc gttgcgcttc ttccacctct tctttgctac gcacttgaat acggcttaaa
      961 atgctaatta cattcaattt taaggtatca agcatattgg taaacatcgc aaaagattcc
     1021 tttttatact cttgcttcgg atctttttgt gcataaccac gcaagtgaat acctttgcgt
     1081 aaataatcca ttgaggctag atgctctttc caaagctcat ctaagttttg tagcattaca
     1141 cctttttcaa aattacgcat tacctctgcg cctactattt cttccttcgc attgtactct
     1201 gcaatcgcaa tatttaagat acgttcacgc aaagtctctt cgtgcaagtc tttttcagtt
     1261 tcaagccagt gagaaatcgg taaatccaac ccaaattcac ggcgtaaacg ctcttctaag
     1321 cccggcacat tccacatttc ctcgatagat tgaggcggaa tatattggtt aatcgtgctt
     1381 tcaaatacat cttggcgaat gctttcgatc attgaggcaa tattatctgt ttctaataga
     1441 tgattgcgtt gttcgtaaat tactttacgc tgttcattgg caacatcatc atattgtaat
     1501 aaatgcttac gcccatcaaa gttatgcgct tctactttcg cctgtgcaga ggcaatcact
     1561 ttggttaaca gtttagactc catcgcttca ccttcttcgg taaaggcttt acgcatcata
     1621 tttaatttac cttcattgag gtaaattctc attagggcat catctaaaga gagatagaaa
     1681 cgtgatgacc ccgggtcacc ttgacgacca gaacgacctc gcaactggtt gtcgatacgg
     1741 cgggattcgt ggcgttctgt accaataata tgtaaaccac cggcttgcat tacgatgtca
     1801 taacgctctt gccacgcagc tttaatcgca tcaatttgtt cttgtgtcgg gttctcaagc
     1861 ttggctactt ccattttcca gttaccgcca agcacaatat ccgtaccacg accagccata
     1921 ttggttgcga tagtaaccgc ccccggagct cccgcttccg ctacaatttc agcctcttga
     1981 gcgtggaatt tcgcatttaa tacgttatga gcaataccgg ctttggttaa ttctgccgat
     2041 aataactctg atttttccac cgatgctgtg ccaaccaaaa caggctgttc acgctcgata
     2101 cagtctctaa tttcagtaat aatcgccgca aatttctccg cttcgctttt aaacattaag
     2161 tctgtacggt catcacggat caccggtctg ttggttggaa tcaccaccgt atttaagcca
     2221 taaatttgct ggaattcaaa ggcttcggtg tctgccgtac cagtcatacc ggctaatttt
     2281 tcgtacaaac ggaaatagtt ttggtaagta attgaggcaa cagtttggtt ttcgccctga
     2341 atagccacac gctctttagc ttcaatcgct tggtgtaagc cgtcagacca acgacgtcca
     2401 gccattgtac gaccggtgtg ctcatcaata atcacaattt caccgtcttt tacaatgtaa
     2461 tctacgttgc gttcaaataa tttatgggca cgcaatgctg cactcacatg gtgtaacagc
     2521 gaaatacgag cagggtgata taaactttcg ccctcttcca ttaaccccat ttgagttaag
     2581 aaatcctcta ctttcaccat accacgctcg gttaaatgag cctgtttgtt tttcagatct
     2641 aaggtaaaat cgccctcacc ggtgtactct tcactgtctt ctttatcttg agcaatcaaa
     2701 tgcggaatga tttgatctac cgcttgataa atttgggtcg catcttccgc aggccctgaa
     2761 ataattaacg gcgtacgagc ttcatcaatt aaaatagagt ctacttcatc aactaatgcg
     2821 tagtgtaact cacgttggaa acgttcgttt ttatcgtgag ctaagttatc acgcaagtaa
     2881 tcaaaaccta attcgctgtt agtcgaatag gtaatatctg cttggtatgc agcacgtttt
     2941 gcatcagaag gtaaccccgg aatattcact ccaacggtta agcctaaaaa ctcaaataac
     3001 ggacggttgg tttccgcatc acggcgggcg aggtaatcat tcaccgtaac aacatgaaca
     3061 cctttaccgg ttaaagcatt caaataacaa gataaagttg cagttagggt tttaccttcc
     3121 ccagtacgca tttctgcaat attacgcccc gttagcacca taccgccgat cagctgtaca
     3181 tcaaatggtc gcatacctaa tactcgtttg cttgcttctc tcactgtcgc aaaagcttca
     3241 ggtaataggc tatctagcga tgcaccatct gcaaggcgtt gcttaaactc cgctgtttta
     3301 tcctttaacg cctcatcaga taattgctcg aaggttggtt caagcttatt aatttgtgcc
     3361 actcgctttc ttaaacgttt taaagtgcga tcgttgcttg agccaaaaat agaagtcagt
     3421 aatttt
//
LOCUS       DANLUT010000191         3323 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLUT010000191 DANLUT010000000
VERSION     DANLUT010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            59..1234
                     /locus_tag="PXB38_002318"
     CDS             59..1234
                     /locus_tag="PXB38_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL5354575.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLAAELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSAEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            1331..2407
                     /gene="fbaA"
                     /locus_tag="PXB38_002319"
     CDS             1331..2407
                     /gene="fbaA"
                     /locus_tag="PXB38_002319"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL5354576.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            2508..3302
                     /locus_tag="PXB38_002320"
     CDS             2508..3302
                     /locus_tag="PXB38_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354577.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVEPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
BASE COUNT         1022 a          609 c          731 g          961 t
ORIGIN      
        1 aaactgatat aatccgaccg ttatcacttt taaattttaa tctaaagagg aacaaactat
       61 gtctgttatt aaaatgactg accttgattt agcgggtaaa cgtttattta ttcgtgctga
      121 ccttaacgta ccggtaaaag atggcaaagt aacatcagat gcccgtattg ttgctaccat
      181 tccaacctta aaattagcgt tacaaaaagg tgctaaagta atggtaactt cgcatttagg
      241 tcgtccgaca gaaggcgtat ttgaagagga aaactcttta caacctgtag ttgattactt
      301 aaatgcatca gatttaggtg ttcctgttcg tttagtgcgt gattacttag acggtgttga
      361 agtaaacgag aatgaaatcg tggtgcttga aaacgtgcgt attaacaaag gtgagaagaa
      421 aaacgaccct gagttagcaa aaaaatatgc atcactttgt gatgtgtttg taatggacgc
      481 attcggtaca gctcaccgtg cggaaggttc aacttacggt gtggcagaat atgcccctgt
      541 tgcgtgtgca ggtccgttat tagccgctga attagatgca ttaggcaaag cattaaaaga
      601 gccacaacgt ccaatgttag cgattgtggg tggttctaaa gtatctacta aattaactgt
      661 gcttgattcg ctttcaaaaa ttgccgacca attaatcgtg ggcggtggta ttgccaatac
      721 ctttattgcc gcagaaggtc acgctgtggg taaatcatta tacgaagaag atttaatccc
      781 tgaagcaaaa cgtttagcac aagtaaccaa tattcctgtt ccggttgatg tgcgtgtagg
      841 tactgaattc tctgaaactg caccggcaac ggaaaaagcg gtgagtgaag tacgagctga
      901 tgaatcaatt ttcgatattg gtgaaaaatc ggcagagcaa ttagctgaaa ttatccgtaa
      961 ttcaaaaacc atcctttgga atggtccggt cggcgtgttt gagttcccta acttccgtaa
     1021 aggaacagaa gtgatttcaa atgcgattgc agaagcaacg gcaaacggtg cattctcaat
     1081 tgccggtggt ggcgatacct tagctgcgat tgatttattc ggtatcaaag acaaaatttc
     1141 ttacatttca accggtggcg gtgcgttctt agaattcgtg gaaggtaaag tattaccggc
     1201 agtggaaatc ttagaaaaac gagctaacgg ctaacagtta caagcggtca aattttgtga
     1261 aaattttgca agatttggcc gtatatttta acaatgtgct tttgcacatt tcatacaaag
     1321 gaagcaaaaa atgtcattat taaacatcgt aaaaccgggt gtagtaacag gcgacgacgt
     1381 acaaaaagtt ttcgcttatg ctaaagaaca caacttcgct attccggcag taaactgcgt
     1441 gggttcagat tcagttaatg ccgtattaga aacagccgct cgtgtaaaat caccggtaat
     1501 cgtgcaattc tcaaatggtg gtgcgcagtt ctatgcgggt aaaggcatta agccggcttc
     1561 aggcgctcgt gcagatgtat taggggcgat tgcgggtgca aaacacgttc atcaattagc
     1621 agaagaatat ggtgtgcctg tgattcttca caccgaccac gctgcgaaaa acttattacc
     1681 ttggatcgat ggcttacttg aagcaggcga aaaacacttc gcagaaaccg gtcgtccgtt
     1741 attctcttca catatgatcg atttatctga agagccaatc gaagaaaata tggaaatctg
     1801 ccgtgaatat ttagcccgta tggacaaaat cggtatgacc cttgaaatcg aaatcggcgt
     1861 aaccggtggt gaagaagatg gcgtagataa ttctgatgta gatgaatcta aactttacac
     1921 ccaaccttct gaagttttat atgtttacga ccaattaagc ccaatcagcc cacgtttcac
     1981 gattgcggca gcatttggta acgtacacgg tgtttacaag ccgggtaatg taaaattaaa
     2041 accatcaatc ttaggtgctt cacaagagta tgtatctaaa gagcgtggtt taccggcaaa
     2101 gtcattagac ttcgttttcc acggcggttc tggttcttca cgtgaagaga ttcgtgaagc
     2161 aatcagctac ggtgcaatca aaatgaacat tgacactgac acccaatggg ctgcgtggga
     2221 cggtattctt caattctaca aagcaaacga agcatattta caaggtcaat taggtaaccc
     2281 gacaggccct gatgcaccaa acaaaaaata ctacgatcca cgtgtttggt tacgtaaaat
     2341 ggaagagtct atgtctaaac gcttagagca atctttcgaa gacttaaact gtgtgaacgt
     2401 tttataattt gcaaaaaatt ccataaatca ggccgcttgt ataagcggtc tttttttatt
     2461 tattttttgc ggtaaactat cactttattt ccaagcacca atttattatg gcattacttg
     2521 aagttaatca tctgaataag cgttttgttg aacgtagtag cctatttcat aaacaagatt
     2581 tttatgcggt aaaagaagtt tcttttaccc taaatcgcaa ggaaacttta gcgattattg
     2641 gtgaaaacgg agctgggaaa tctaccttgg ctaaaatggt tgctggtatg gttgagccaa
     2701 catctggaga actgattttt agaggaacac cgctttcatt tggcgattat aaataccgag
     2761 ctaagcatat tcgtatgatg tttcaggacc ctaacgatgc ctttgatcct aattataata
     2821 taggacaaat tttagatgct ccgctccgct tggcgacaga tttaaatgaa gaggaaagaa
     2881 atgagcgtat ttttaatacg ctaaaattgg taggaatgta tcctgagcaa gcgctcgttc
     2941 ctatttcaga ggcttccagt gggcaaaagc agcgtattgc gtttgctcgt gctttaattt
     3001 tagaaccgga aattattatt gcggatgata cgattaattc actggatttt tcagtcaaaa
     3061 cacaattaat taatttaatg ttaagtgtcc agcagcgaca agggattgct tatatttatg
     3121 tggggcaaaa tttaggtctg atcaaacata ttgccgataa aataatggtg atgcaaagtg
     3181 gcgaagtagt agagtatggc ttgacgaaag aggttttact gaatccgcaa catcaaatta
     3241 cgaaacgttt aattgaaagt cattttggaa agcaccttag ttcctatgct tgggcaagct
     3301 aaatctttac tcctgctcta ata
//
LOCUS       DANLUT010000192         3316 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLUT010000192 DANLUT010000000
VERSION     DANLUT010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(27..650)
                     /locus_tag="PXB38_002321"
     CDS             complement(27..650)
                     /locus_tag="PXB38_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5354578.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGTDFSAKMEALLENEEIESQANVEKSKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEMAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
     gene            complement(696..1268)
                     /gene="rpoE"
                     /locus_tag="PXB38_002322"
     CDS             complement(696..1268)
                     /gene="rpoE"
                     /locus_tag="PXB38_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL5354579.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            complement(1490..3034)
                     /gene="leuA"
                     /locus_tag="PXB38_002323"
     CDS             complement(1490..3034)
                     /gene="leuA"
                     /locus_tag="PXB38_002323"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL5354580.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
BASE COUNT          898 a          727 c          588 g         1103 t
ORIGIN      
        1 tggctttcag taacttattt tacctattat ttttgtatat ttggctctga ttctgtattg
       61 gaagaagttt gtgctttttg cttttcttcc tcagataagg ttaaattttt aacgttatta
      121 gtacggcgtt gtaactcatg gttttctaat aacgcattaa tcttacgctg ttgaagctct
      181 aactgttctt ctgttggttg atcttgaact ggcgcattat aacttaccgc ttcaactgaa
      241 ttgctaaatg gcaatgtttg taatactggt tgttgcgttt gagccatttc atcactcgca
      301 ttcattgaat taacccctaa taccgcaact aagcacactg aagctgcaat accggcttgc
      361 ataattggag ttccccaacg cttgagcttg agcaataagc ctttagattt ctctacattt
      421 gcttgagatt caatttcttc attttccagt aatgcttcca ttttagcaga gaaatctgtc
      481 cctaaaatga tctcatcacc ttgcatcaca ctacgaatag tgtgataact tgcccatttt
      541 tgctgtaatt cagggctgtt agttaatgtt tctacaaatg ctgtatcaac attttgccca
      601 tccatataag ctgaaaggcg ttcattttgt tgagtgatgc gttcttgcat aattgactcc
      661 aatgatttaa atctcttcta aaataatctt tctatctatt gcataagtgg cttgatttta
      721 gcatcaatcg cttcccttgc tcggaaaata cgggaacgta cagtaccaac cggacattcc
      781 atcacttctg cgatttcttc gtaacttagc ccttccaatt ctcttaaacg aatggcggtt
      841 ttaagctcat caggtaaatt ttcaatcgta tcaaacacga ctttctttaa ttcctcggat
      901 aatatcaaat tctctggcgt atcactttca cgaagttgcg cgcctacatc ataactttca
      961 gcgtcttcgg caagaatatc ttcttttggc ggtcttctgc ctaaagaggt taaatgattt
     1021 ttcgcagtat tcactgcaat gcgataaagc cacgtataaa aagcactttc gccacggaaa
     1081 gactctaaag aacgataggc tttaataaaa gattcttgca caatgtccgg aatatcatct
     1141 cttgcaacat aacgagtcag caaaccggct actctatttt gataacgtac aacaagtaaa
     1201 ttaaatgctt ttttatcacc tttttgtgct ttttcgacta attcttggtc ggtgatctgt
     1261 tcgctcaact gcggactctc ctaaatatca atatgtcatt ttccattgca cactttgtta
     1321 gtgtgtgctt tatgacaaaa gttcaaaaaa tttgaaaaat tgtgtaattt tttacattcc
     1381 tagataaaac ctacttaata aactaagcaa gcggtcggat tttagcgaaa ttttgcaaaa
     1441 atttcaaaaa atccgaccgc ttgtctatgt tatgctttcg ctctataagt tatttcttcg
     1501 cttttaaatc tgccactttt tgtgaacggt aaatcgcatt aatggcgtga attaaagctc
     1561 gggctgaaga ttccacaata tcggttgcca aacccacacc gtggaatttt cgaccttcat
     1621 attccactac aatatccact tgccctaatg cttctgctcc ttcgcctttc gcagtcagat
     1681 tatagtgcga catttttagc tccattccca caatgttcat aatggcattg taagttgcct
     1741 caactggacc atttccccct tgagatgtag cactttgacg aacgccgtct aattccacct
     1801 gtacaaaagc cgaagccggt aaaccgctga ttagttgggt ggtaattaca tctaatttta
     1861 agcggtcttc atcgccttgc tgcatatcaa tgaaggcaag agcttctaag tcataatcaa
     1921 acacttgccc ttttttatca gcaagttgca agaaggcctc ataaagttta tctaaatcgt
     1981 aatccgtttc cgtataaccc atatcagcca tatgcccttt caccgctgct ctacctgaac
     2041 gggcagttaa attcagcttc tcttttttca agccgatggt ttccggcgac ataatttcat
     2101 aagtattttt atttttcagc ataccgtctt ggtgaatacc tgaagagtga gcaaaggcat
     2161 tgctaccgac aatcgctttg ttcggctgaa tcggcatatt gcaaagctgg ctgaccattt
     2221 ggctgacacg gtgaatttct tgggtattaa tgcgggtatc aacccccata aattcttggc
     2281 gggttttaat tgccattacc acttcttcaa gagcggtgtt accggcacgt tcgccaatac
     2341 cgttgatagt acactcaatc tgtctcgctc cgttttgcac cgctgtcaat gagttggcgg
     2401 tagccatacc taaatcgtta tggcagtgaa cagagacaat cgctttatcg atattcggaa
     2461 cacggttcat cacttggtgg ataatattgc cgtattcatt cggtaaacag aaaccgactg
     2521 tatccggaat attcactgtg gttgcaccgg cattaatggc agcttctaca atgcggcaga
     2581 tgttatcaat tccagtacgc ccagcatctt cacaggaaaa ctcaacatca tcagtataat
     2641 ttctggcgcg ttttaccgct gcaaccgcca tttcgactac atcatcaaat gaacgtttta
     2701 atttagcctc aacgtgtaat gccgagctgg caataaaggt atggatacgg aatgcttctg
     2761 ctacttttaa ggcttcataa gctgcatcaa tgtcttttgc aaccgctcgg gaaagcgccg
     2821 ccacccggct gtttttgata tgacgagcga tggtttgtac tgattcaaaa tcgcccgctg
     2881 aagaaactgg aaaaccgact tccatcacat caacccctaa acgttctaaa gcaagggcaa
     2941 tttgcaattt ttcttttacg gttaaacttg cttttaatga ttgctcacca tcacgtaaag
     3001 tcgtatcaaa aataataatg ttattgttgc tcatagaagc ctctttttag gtgtttttat
     3061 ttgataaaaa aagcccgcat tttaaggtgc gggcaagaat gtggatagtc catttacttt
     3121 ttccaatcaa tctttatcct cgcacaaaat acgataacag agataatcgg agtaaggtaa
     3181 atttttccat gttgtgttgt gtgtttatgt ttgcattgtt attcagtagt tgaggtgtat
     3241 attatcctta tccaaatcaa tgtcaatagc atttttctct tcacacaacc gtttaccagc
     3301 ccattaattc aagtca
//
LOCUS       DANLUT010000193         3315 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLUT010000193 DANLUT010000000
VERSION     DANLUT010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            174..626
                     /locus_tag="PXB38_002324"
     CDS             174..626
                     /locus_tag="PXB38_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HDL5354581.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISLGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
     gene            681..1901
                     /locus_tag="PXB38_002325"
     CDS             681..1901
                     /locus_tag="PXB38_002325"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL5354582.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            2028..2411
                     /gene="iscU"
                     /locus_tag="PXB38_002326"
     CDS             2028..2411
                     /gene="iscU"
                     /locus_tag="PXB38_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL5354583.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            2520..2843
                     /gene="iscA"
                     /locus_tag="PXB38_002327"
     CDS             2520..2843
                     /gene="iscA"
                     /locus_tag="PXB38_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL5354584.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            2853..>3315
                     /gene="hscB"
                     /locus_tag="PXB38_002328"
     CDS             2853..>3315
                     /gene="hscB"
                     /locus_tag="PXB38_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL5354585.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIYTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLR"
BASE COUNT         1073 a          589 c          725 g          928 t
ORIGIN      
        1 tctttggtat tttcggctct tttttcgtat aattagcgtt attgttttaa tctgttttaa
       61 tatataaaac ctttcacact aattagtcct aaatgattga ctaaattggt ggggtatatc
      121 aaaattgagc aactgttcca gaagattttc tggataatca atgaggatat tttatgaagc
      181 ttacctcaaa agggcgttat gcagtaaccg ccattttaga tattgcttta cacggaaaac
      241 tagagccggt tagcttagcc gatatttcag atcgccaagc gatttcactg tcttatttag
      301 agcaactgtt tgctcaactt cgccgtgacg gtatcgtgca gagcgttcgt ggaccgggtg
      361 gtgggtatca attaggtaaa aaaccggaag agattagctt gggtatgatc atctccgccg
      421 tgaatgaaaa tattgatgtc accaaatgta aaggtagtgg taattgccgt aaagattctc
      481 agtgtttaac gcattctttg tgggagcggt tagaagatca aattgagcag tttttaggga
      541 caatttcagt tgcggattta gccgcagaac acgctgatca cgattgtgaa aaagagcatt
      601 gtcacgatca tcctcatcat cactaattgc aaatttttta tcaaaaatga ccgcttgggt
      661 tgttttaact aggagtaaca atgaaattac caatttattt ggattacgca gcaaccacac
      721 caatggacga acgtgttgcg aaaaaaatga tggaatatat gaccaaagac ggtatctttg
      781 gtaaccctgc ttctcgctca cacaaatttg gttgggaagc ggaagaagcg gttgatgtgg
      841 ctcgtaacca aattgccgat ttaatcggtg cagacagccg tgaaatcgtt ttcacttctg
      901 gtgcaacaga gtcggataac ttagccatca aaggtgcggc tcatttctat caaaccaaag
      961 gtaaacacat tatcactgtt aaaaccgaac ataaagcagt attagatact tgccgtcagt
     1021 tagagcgtga aggttttgaa gtgacttact tagaccctga agaagacggt attttagatt
     1081 tagctaaatt aaaagcggct attcgtccgg acacaatttt agtttcggta atgcacgtaa
     1141 ataacgaaat gggcgtaatc caaccgatta aagagatcgg tgcaatctgc cgtgcgaaga
     1201 aaatcatttt ccacgttgat gcgacccagt ctgttggtaa aatcgaagtg aatgtacaag
     1261 acttaaatgt tgatttaatg tctttctcaa gccacaaatt atacggacca aaaggtatcg
     1321 gcggtctata tgtttgtcgt aaaccacgtg tgcgtttaga agcaattatt cacggtggcg
     1381 gtcacgagcg tggtatgcgt tcgggtacat tgcctgttca ccaaattgta ggtatgggtg
     1441 aagcatatcg tatcgctaaa gaagaaatgg caacggaaat ggctcgttta accgtgttac
     1501 gtgatcgttt atataacggc tttaaagata ttgaagaagt atatgtaaac ggttcaatgg
     1561 aagaaggcaa acgtatcggt tcaaacctaa acatcagctt taactttgtt gagggcgaat
     1621 cgttaatgat gtcattacgt gatatcgcag tatcatcagg ttcagcttgt acttctgcaa
     1681 gtttagagcc atcttatgtg ttacgtgcaa tcggtcgtga cgatgaatta gctcacagct
     1741 caatccgttt cactttaggt cgttggacga ctgaagaaga aatcgatcat actattgaaa
     1801 tcgtgaaaaa agctatcgtg aaattgcgtg agctttcgcc tctttgggaa atgttcaaag
     1861 aaggtgtaga tttgtctaaa atcgaatgga atcaccacta attcagaaaa attttgcaag
     1921 ggcaaataat atttgcccct acaaaataag ctttcatcac aaatagtaaa ttgaatgtag
     1981 gggcgaaata ggtttcgccg gaaataggaa ataaaaggaa tacaaaaatg gcatatagcg
     2041 aaaaagtaat tgatcattac gaaaacccac gcaacgtagg gacttttgat aaagaagcat
     2101 cagacaccgg tacaggtatg gtgggagcac cggcttgtgg tgatatttta cgtttacaaa
     2161 ttaaagtgaa cgatcaaggt atcattgaag atgcacgctt taaagcatac ggttgtggtt
     2221 ctgcaatcgc atcaagttct ctcattaccg aatgggtaaa aggtaaatca ttagaggaag
     2281 caggtgcgat taaaaacagt gatatcgctg aagagttaga attaccaccg gtaaaagttc
     2341 actgttcaat cttagcagaa gatgcaatca aagctgcaat tgcagactac aaagagaaac
     2401 aagctaagta atatgataca atcaatgcaa gcggtcgatt tttgcaaaaa atttgcaaaa
     2461 tttaaccgct tgcatttgct atttctatct tgatttaatc cattcacata aggaaaacta
     2521 tgagcattac cttaacagaa gctgccgcaa accgagttcg tacattctta gaaaacagag
     2581 gtaaaggtat cgggctaagg cttggtgtga aaacttccgg ttgttcgggg cttgcctatg
     2641 tgcttgaatt tgttgatgta ttaaatgaag acgatcaggt tttcgaacaa cacggcgtaa
     2701 aagttattgt cgatgaaaaa agcctgactt acttaaacgg tacgcagctg gattttgtga
     2761 aagaaggctt aaacgaaggc tttaaataca ccaacccgaa tgttaaaaac gaatgcggct
     2821 gtggcgaaag ttttagtgtg taaggaactg taatgaataa cccttttact ttatttgatt
     2881 tacccgttca atttcaactt gataacgccc agctttctga gcgttatctt gctttacaga
     2941 aacagcttca cccagataac tttgcccaca aatcaagtgc tgaacagtta gaagcggtgc
     3001 aaaaatctgc tgatgtcaat gaggcactca atattcttaa agatccgatt ttacgggcag
     3061 aagcgatgat tgaaatctat acaggtgaag ccaaaaatct cgaagaaaaa agtatgcgag
     3121 atgtggattt cttaatgcag caactcgaat ggcacgaaaa actggaaacc attgagcatc
     3181 gtaaagacga aaccgaactg accgtctttt taaaacagat taaagcggaa caaaaagcag
     3241 tattagaaca gcttgaacaa acgttaaata cagccgactg gcaaaaagcc aatgcgttaa
     3301 ccgacaagct ccgtt
//
LOCUS       DANLUT010000194         3312 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLUT010000194 DANLUT010000000
VERSION     DANLUT010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(24..209)
                     /locus_tag="PXB38_002329"
     CDS             complement(24..209)
                     /locus_tag="PXB38_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HDL5354586.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATSQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            complement(325..1647)
                     /gene="pepP"
                     /locus_tag="PXB38_002330"
     CDS             complement(325..1647)
                     /gene="pepP"
                     /locus_tag="PXB38_002330"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL5354587.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            1863..2186
                     /locus_tag="PXB38_002331"
     CDS             1863..2186
                     /locus_tag="PXB38_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5354588.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(2263..3282)
                     /gene="glpX"
                     /locus_tag="PXB38_002332"
     CDS             complement(2263..3282)
                     /gene="glpX"
                     /locus_tag="PXB38_002332"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HDL5354589.1"
                     /translation="MKRTLSFEFSRVTEAAALAAYSWLGRGDKNAADEAAVKAMRFML
                     NQMEIRGEVVIGEGEIDEAPMLYIGEKIGLSRLEDEEISIAVDPIDGTRMTAMGQANA
                     LSVLAAGGKETFLKAPDMYMEKLVVGQECKGMIDLNLPLEQNLRRVASKKGKLLSQLT
                     IAILAKPRHEKIIADVQKLGVRVIAIPDGDVATAVQCCLPESELDLLYGIGGAPEGVV
                     AGAAVRALGGDMQARLIPRNQVKGNSPENLTATEKELSRCNEMNVPVNTVLKLEDLVR
                     DDNIVFVATGITSGELLKGIKRRGNIASTETLLIRGKSRTIRKIQSDHYVDRKDNELL
                     SLLDL"
BASE COUNT          985 a          770 c          565 g          992 t
ORIGIN      
        1 aaataatatc agggctttat agattatgct tcagctttgg ttaaatcttt tacttctgtt
       61 tcaggtgtaa cttttttaac tgcttcaatg cctttttgac aaccttgctt agtcgtatag
      121 gcttggctgg ttgcaataac ttcgtggtta cccgctttta aacgccaacg aaattcttct
      181 tttgcatctt tgtaaatttc aaaatacata taaacactcc ttcgtgttgt gattgcccaa
      241 acactgtgtt tgtgtcgggt tagcttaagc taaattcccc aaaatatcaa agcaagcggt
      301 cattttttta caaaaatttg cgaattaatt taacgattgc atcaactgct caacatccgc
      361 aatttcttta gggcaaccgc tgcttaagtt tttgttgccg tattcggtaa tcagcaaatt
      421 atcttcaatc cgaatcccaa tacctttata ttgctccggt acatccgcat ctttaggaat
      481 atagataccg ggttcaacag ttaacaccat accaatctgc aaaggacgat cccgctccgt
      541 gccgtaatcc cccacatcgt gaacatctag ccctagccaa tgccctaatc cgtgcatata
      601 aaattggcga taggcttttt gctcaatcag gctttccaca tcaccgttta aaattcctaa
      661 gcgaaccaag ccctgcgtga gaatctgtac agccttatcg tttgccgctt taatcgagct
      721 gtttggcaca agaagattaa tcgcctcttt ttgcatagtt aaggttaatt cgtacagctc
      781 tttttgcggt tcggagaatt tcccattaat agggaaggtt cgggtaatat cgccggcgta
      841 atacgcaaat tccgcccctg catcaatcag taataaatcg ccgcctttaa gcacctgatc
      901 attttcattg tagtgaagaa tacaggcatt ctcaccgccg gcaacgattg aattatatgc
      961 cggaaacctt gctccaaaac ggctaaattc gtgttgaatt tccccctcaa tttcccactc
     1021 ataacgattc gggcgagctt gtttcatcgc tcgaatatgt gccattgaag aaatatgaca
     1081 cgcctgctga attaaggcaa tttcaaattc tgatttaatc aaccgcattt ccgataacat
     1141 tggctgccaa tcaatcaagg ttgtcggcac tttttgccga ttgactttca ttttttcaaa
     1201 tgttgcaaac aaaatattat cgccccactc ttgtatccct aacgcacaat aacaagcggt
     1261 cagattttct aatttttttg caagaacggt ttcaatgtca tcaatatcaa aagctgcgtt
     1321 aagctgtaac gtttttggag cttcctcaat ccctaaacgt ctgccattcc aggtttccat
     1381 taaagggtct tttttacgca caaaaataat actttccgtt ttaccttcgc tttttaccag
     1441 caatacggct gatttaggtt ctgccaaacc ggttaaatac caaaagtaac tatcaggtct
     1501 aaacaagtat tcagagtcac tattacggcg tttttccgat tcggtaaaaa ccaataacgc
     1561 agaattatcc tgcatttgct caagcacacg ctcacggcgt gcggtaaatt cttcttgtgg
     1621 cattttagcc aaataagcga gatccattat ttctcctttt tattatatct atatcgaaac
     1681 ctgccttatt ttagcacaaa cgcagcataa attcagccta accaaaacag atgaaagatt
     1741 atatttgaga tcttgattgc aaaaacaaaa cagattaaga ttaaatataa cctttacata
     1801 tctaaacagg ttatatttaa cctataaata cataaataat ctacttttag ctcaaaaata
     1861 aaatgaaact atcaagcgaa ctacaaaatc agataaacca actaaatcag ttacgaaaac
     1921 aggcactcaa acaagagcaa gacgagcaga aattgtttga aaaaaataaa attgaagatt
     1981 tgccacattt tggcacgcag cttaatgctc agaggaaact attaggcata gaattaacca
     2041 cccttgaaat gcaaaccggc atttcaagct ctaccctaaa acgcttattt aaagacccaa
     2101 gccaagtgaa atttcagaca atttgtattg tggcagaaac actcggcttt aatttatgtg
     2161 caattaatac tcacaaacaa gagtaagcgt gacaatgtag tgattttgat tactttggga
     2221 agacaaaaaa tcgggctaaa agcccgattt atcagagaaa agctataaat ccaataaaga
     2281 aaggagttcg ttatctttac gatcgacata atggtcggat tgaattttac gaatggttct
     2341 agatttgcca cgaataagta aggtttcagt gctggcaata ttgcctctac gtttaatccc
     2401 ttttaacaat tcacctgaag taatgccggt tgcaacaaag acgatattgt cgtcacgcac
     2461 caaatcttct aatttcaaca ccgtattcac cggcacattc atttcattac agcgtgaaag
     2521 ctctttttcg gtagcagtta aattttccgg gctattcccc ttcacttggt tgcgaggaat
     2581 taaacgtgct tgcatatcgc cacccaatgc acgaaccgca gcccccgcca ctaccccttc
     2641 aggtgctccg ccgataccat aaagcagatc caattcgctc tctggcaaac agcattgcac
     2701 cgcagtcgca acatcgccat caggaatcgc aatcactctt acccctaatt tttgcacatc
     2761 ggcaattatt ttttcgtggc gaggcttagc aagaatagca atggttaatt gggaaagtaa
     2821 tttgcccttt ttcgaggcga cacggcgaag attttgttca agcggaagat ttaaatcaat
     2881 cattcctttg cattcctgcc ccaccactaa tttttccata tacatatcag gggcttttaa
     2941 aaaggtttct ttgccgcctg ctgctaatac cgacaacgca tttgcctgcc ccattgcagt
     3001 catacgagta ccgtcaatcg ggtcaaccgc aatactgatt tcctcatctt ctaggcggga
     3061 tagaccgatt ttctcgccaa tataaagcat cggtgcttcg tcaatttcgc cctcaccaat
     3121 taccacttcg ccacggattt ccatttggtt cagcataaac cgcattgctt tcaccgcagc
     3181 ttcatcagcg gcatttttat ccccacggcc tagccaagag taagctgcta gagccgctgc
     3241 ttccgtaaca cgagaaaatt caaaagaaag agttcgtttc atttttgttc cttagtttct
     3301 tgaaagaaaa ac
//
LOCUS       DANLUT010000195         3307 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLUT010000195 DANLUT010000000
VERSION     DANLUT010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(2..172)
                     /gene="rpmG"
                     /locus_tag="PXB38_002333"
     CDS             complement(2..172)
                     /gene="rpmG"
                     /locus_tag="PXB38_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL5354590.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(184..420)
                     /gene="rpmB"
                     /locus_tag="PXB38_002334"
     CDS             complement(184..420)
                     /gene="rpmB"
                     /locus_tag="PXB38_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL5354591.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(651..1388)
                     /gene="radC"
                     /locus_tag="PXB38_002335"
     CDS             complement(651..1388)
                     /gene="radC"
                     /locus_tag="PXB38_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL5354592.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDAELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1538..2740
                     /gene="coaBC"
                     /locus_tag="PXB38_002336"
     CDS             1538..2740
                     /gene="coaBC"
                     /locus_tag="PXB38_002336"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL5354593.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            2740..3057
                     /locus_tag="PXB38_002337"
     CDS             2740..3057
                     /locus_tag="PXB38_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354594.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3054..3236
                     /locus_tag="PXB38_002338"
     CDS             3054..3236
                     /locus_tag="PXB38_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5354595.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
BASE COUNT          985 a          684 c          684 g          954 t
ORIGIN      
        1 attatttaat ttttgcttct ttgtagataa cgtgtttacg cacaactgga tcaaattttt
       61 tgatttccat tttttcaggc atattacgtt tgtttttatc tgttgtgtag aagtgaccag
      121 tttctgctgt agaaactaaa cggattttct cacgagcgcc tttagctgcc attttttagc
      181 tccttagatt ttttcgccac gagcacggat ttcagctaat actgcatcaa tgcctttttt
      241 atcaataata cgcatacctt tcgcagttaa acgtaaggtt acgaaacggt tttcgctctc
      301 aacccagaaa cggtgagtgt gaaggtttgg taagaaacga cgtttagtcg cattcattgc
      361 gtgtgagcgg ttgttaccaa ctgctggacg cttgccggtt acttggcaaa ctcttgacat
      421 ttgaatttct ccaataattt taagcttaaa aatggttcgg gagatctcac aaaaggcgtt
      481 gctcaaccaa cccctccgat tttgattgcc tcgtcaggca ttaacccgac ccagtctatg
      541 taataaagac tgccgattat accgatttca tttgttatat tcaagtagaa tttatatgcg
      601 tatcttttac tgtttcagga gaaatgttaa aggttacata aagcaagcgg tcattttcta
      661 tcagaaattt gcaaaaatga atgctccttc atctctaatt tctcttcctc gaacgaaaaa
      721 tagtcccctt tgccgacaat aatatgatcc acaaagcgaa tatcaaccaa ttcgcacgcc
      781 atttcgatct ttttagttaa acttctgtcc gactcactcg gcagacaaga acctgagggg
      841 tgattatgag ccacaataat cgccgcggca ttatatttta acgctctttt aataatttct
      901 cgggggtgaa cagcagtttg attaatggtg ccgaagaaca ttttttcttt ataaatcaat
      961 cggttttggt tgtccaaaaa cagcaccata aaaacttccc gttcttcttc ctccaactcg
     1021 gtttggaaat acataatcgc catataaggg gcttgaatca tctcgctaaa ttccatttgt
     1081 tgagccagat agcgtttggt catctcttta gaggcttgta actgaatgta tttggttttg
     1141 cctaaaccgt aaattttgca aaaatcatca atatttgcat tcagtaattg gcgtaacgag
     1201 ccaaatgcca tcaacacact ctctgccaat gccagcacag gcacagcttt cgtaccagtc
     1261 cgtaaaaata tcgctaataa ttcggcatcg gttaatgagg ctgccccctg tgttaataat
     1321 ttctcacgcg gcatcattgt tggctcttga gaatcttcat caaaaaaatc gttcattttt
     1381 tcctccatca atttagttaa gcataaaaga gccaaccttt gcagacaaag ggatttattc
     1441 aatttttcga gcaagatcgc aaaaatagtg aagttgtgag caactcctta ttccgctaaa
     1501 atatgcaaaa taaatccacg ctttaaggat agtaaagatg ttacaaaaca aaaaaatttt
     1561 agtcggcatt tccggtggga ttgcagccta caaaaccatt gaatttatcc gccacttaaa
     1621 aaaggcaaat gcggaagtgc gtgtagtgct aaccccagca gcagaagcct ttgtaacgcc
     1681 tttgacctta caagcgattt ccggcaatgc ggtttccact tcactactcg acccacaagc
     1741 cgaactggcg atggggcata ttgagctggc aaaatgggcg gatttaatcg ttatcgcccc
     1801 ggcaagtgcc gattttattg ctcgcctgcg tatgggaatg ggcaacgatt tactttccac
     1861 tctctgcctt gcgactgcaa gcccgatttt gcttgcaccg gcaatgaatc aacaaatgta
     1921 caaacagatt gcggtgcaag aaaatctgtc tgttttagtc aatcgtggcg ttcagctcat
     1981 cggcccgaat agtggcttcc aagcctgtgg tgatgtgggg gctggcagaa tgtctgagcc
     2041 tgaagaaatt taccaagcgg tgttggctca tttctccaac aatcaagatt tagagggctt
     2101 aaatgtaacc attaccgccg gaccgactcg tgaggcaatt gaccctgtgc gttatatcag
     2161 caaccacagc tccggcaaaa tgggctacgc gattgctaat gcctttgccg aacgtggagc
     2221 aaaggttacg ttgattagcg gtccggtgaa tttaccaacg ccgaaaaatg tggaacgaat
     2281 taatgtggaa tctgcggttg agatggagca acaagcggtc aaatttgccc aaaaatctgc
     2341 gatttttatt ggctgtgcag cggttgccga ttaccgaatg gcggcagtct ctgaccaaaa
     2401 aattaagaaa accgatgcca atgatgaact cacgctaaaa ttggtaaaaa accccgatat
     2461 tatcgctaac gtcgccaatc ttgccgaaaa tcgccctttt gtggttggtt ttgccgcaga
     2521 aacgcaaaat gtggcggagt acgctaaatc gaaactcgaa cgcaaaaatc tggatatgat
     2581 ttgtgccaat gatgtctcag gcggacaagt gttcgggcag gatcaaaatg cgttgcattt
     2641 gttctggaaa aatggtgaaa aaacgcttcc tctggcggat aaaagcaaat tggcagaaag
     2701 tttggtacag gaaattgtaa aacattatcg agaaaaataa tgaaattact ggttagccat
     2761 tttcatcaag gcgaagggaa atttcctaca ttctcagctg gtactgccgt tcgattaggg
     2821 agtgaatgtg taaactaccc aaactggttt gcctgtgaaa ttgacggttg gaaaaccttt
     2881 gtgccaagcc attttattag cgaagataaa ttgatatgcg attataaccc aacggaactt
     2941 gttgcagcac aaggcgagag agtagaattc cttgaactac attaccaatg ggcaattgtc
     3001 aaaagagaaa acgaaattgg ctggctacct tgtgaaatct taagggtaat aggatgaaaa
     3061 ttatgcaact tacgtcaaat cagtatatca acgacattaa acatattctt ttatctgctc
     3121 gccaaaaggc gtatcaagcc gtgaattcgg caatggtcga agcctattgg aaaatcggtg
     3181 aacgaattgt gcaagaagag aaaaatatgg tcaaagatca aaatgaaaaa gtataatatt
     3241 gtattttcag cagataaaaa ctacctgcca tatttagaga ttgccttaaa atcactatta
     3301 gctcatc
//
LOCUS       DANLUT010000196         3295 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLUT010000196 DANLUT010000000
VERSION     DANLUT010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(118..774)
                     /locus_tag="PXB38_002339"
     CDS             complement(118..774)
                     /locus_tag="PXB38_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL5354596.1"
                     /translation="MSNLTILNKAIRQSENLFSLNDLHRAGGGESKHQPAFFVRLDTT
                     QDLISEIQKEDPNFQPLKSINGGANRGTYACMEIALAYASWIDPKFHLVVLRAYMAMK
                     AGEHSQNNQQIAPLAPPPKKYSFDFTEDELQSLVWAWFAFVRGIHTFRYIYPMFQKLG
                     SNMAGEIYGQGFEYSHTAQAAHKILQRITKDFDCDPMTNWRVLKHVRGFDPAFKKPTF
                     "
     gene            complement(1072..1587)
                     /locus_tag="PXB38_002340"
     CDS             complement(1072..1587)
                     /locus_tag="PXB38_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HDL5354597.1"
                     /translation="MDYLLQLLNKLELNTIVGLGTCLFTGYLAFFAWSQLKELRKQHK
                     QKSTIELLISNNSNEYYRKRRKAYMAMRDSGVNLTVLACALNDKNATAEQKRQNFIVL
                     DVLNAIEFICVGIKEDLFDEAVYKRMSKSSVIKDWNTLKPYIMELRRINNNNNKLFCE
                     FEWLATKWESE"
     gene            complement(1938..2013)
                     /locus_tag="PXB38_002341"
     tRNA            complement(1938..2013)
                     /locus_tag="PXB38_002341"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1978..1980),aa:Arg,seq:tct)
     gene            complement(2306..2560)
                     /locus_tag="PXB38_002342"
     CDS             complement(2306..2560)
                     /locus_tag="PXB38_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354598.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNNQSITPK"
     gene            complement(2941..3132)
                     /locus_tag="PXB38_002343"
     CDS             complement(2941..3132)
                     /locus_tag="PXB38_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354599.1"
                     /translation="MLCGRKEKRSSDFINVFEVFENKTTQEFVIERAMFRNGKLIDWN
                     QSDKMNAEQAQQLWQAYIH"
BASE COUNT          886 a          667 c          653 g         1089 t
ORIGIN      
        1 aaaggttggc ataatatcgt tcctttttta gtcaaaaatc tgaattttgg gtgtaaaaag
       61 cccctccgca aaaaatagcg gagtcaaacg caaagagttt gcggagggga aaggggatta
      121 gaacgttggc tttttaaatg ccgggtcgaa acctcgaacg tgtttgagta ctcgccagtt
      181 tgtcatcgga tcgcaatcaa agtctttggt aatccgctga aggattttgt gagccgcttg
      241 tgcggtgtgg ctatactcaa aaccttgtcc gtagatttcg cctgccatat tcgagccgag
      301 cttttggaac atcgggtaga tatagcggaa agtgtgaatg ccacgcacga aagcgaacca
      361 agcccatacg aggctttgga gttcatcttc ggtaaagtcg aaagagtatt tctttggcgg
      421 tggtgcaagc ggtgcgattt gttgattatt ttgcgaatgt tcgccggctt tcattgccat
      481 ataagcacgc aggacgacta aatgaaattt agggtcaatc cacgaagcat aggctaaggc
      541 aatctccata caagcgtatg tgccacgatt agcaccgcca ttgatagatt tcaaaggctg
      601 aaaatttgga tcttcttttt gaatttctga aattaaatct tgtgtggtat caagacgaac
      661 gaaaaacgct ggttgatgtt tactttcgcc tccaccggca cgatgtagat cgtttaagct
      721 gaatagattt tctgattggc gaatcgcctt atttagaatt gttaagtttg acatttttta
      781 tacctatgtg aattaagtta gtccgatcat taagtgggtg atcggggttc aacttaccac
      841 acatagttgg cggagcttat tcagatgtat tgtatatcgc tctctcgccc cgatcatatt
      901 cactctgcag atctgcagac tgcacttctc atatctgaga agtagtaaat tttaggcata
      961 aaaaaaccgc tatgctatcg ggtgcggata accgctatgt gtaagtaagt gcggttatct
     1021 taatccgaag tttggcggtt gtcaacaaaa aagcctcaat aatatatgag gctattcaga
     1081 ttcccatttc gttgcaagcc attcaaattc acaaaagagc ttgttgttat tgttgttgat
     1141 tctgcgaagc tccattatgt agggcttgag cgtgttccag tctttaatga cactgctttt
     1201 gctcattcgc ttatataccg cttcatcaaa taagtcttcc ttgataccaa cacagataaa
     1261 ttcaatcgca ttaagcacat ctaaaacaat gaaattctgt cttttttgct ctgctgtggc
     1321 atttttatca tttaatgcac acgctagaac agtaaggttt acaccgctat cacgcatagc
     1381 catataggct tttctgcgtt tacggtagta ttcgttgctg ttattgctga taaggagttc
     1441 aatggtcgat ttttgcttat gttgcttgcg aagctcttta agctgagacc acgcaaaaaa
     1501 ggctaagtac ccagtaaata aacaagtacc tagcccgact attgtgttca gctctaattt
     1561 atttaaaagc tgtaaaaggt aatccattaa acctcccagc cctcattagc aattaatgta
     1621 aagttagcta aatttttcat atttcactcc tagatgatga agattattgt aacttagacg
     1681 aaaaaagcct actcaagttc ccttggtaag ctgttttgtc atctaaatta ttacaaagaa
     1741 caaacaatta ttgtcagcat tactgtcaat aatatttaat gacgttatat taatccgaca
     1801 ccgtcatgat gtcaaacctt ttaaccgctc tttttaagtt gtagcagtta cacaacttag
     1861 ccattcaaaa ctgctctaca cggtaggttt ccacttcgta ggctcgtcat cgatgatgtg
     1921 cgtaaagcgg ttttggatgg cgaccgcaga gagattcgaa ctctcgaccc actgcttaga
     1981 aggcagctgc tctatccact gaactatgcg gtcaaagtac cgttgcttaa ccccaacggc
     2041 agggtttgct tcaatctaag gaggatggct ttcaccatct caaaccgcta tctagtccat
     2101 tcgtttcgct ggataacggc actttggaga aaacatacgc aaaaaaccaa agtgtgatta
     2161 tcgggctaac tctttgttga gagcggtttg agatggtggc tcttttttat acttgtgagc
     2221 caccgggcca agtcctcttg tttgccacaa cttcgaggaa tataatactt gggcaacatc
     2281 tagggctaat gccgaaaaaa tgaaatcact ttggtgttat tgattggtta ttttttcggt
     2341 atttatcacc atttttcgta tctaaaagct cttctgtaat acagccatca ctaaatttat
     2401 tgatggctga tattgcttgg caaaccgcta tttccagccc cacataatat ggcgttatag
     2461 agacggattt taatattgcc tgcctaatat cttctttctg taattcatca atcgttgaag
     2521 gttcaacgct gcctaattta acaaattcct gattactcat tttgttctcc tgttattaat
     2581 attccaaagc acactttctc aaatatgctt tggaattgaa ccagcgtttg tgcttcccga
     2641 ttcactgccg gtgcttaacg tttccgctgg ttctcacatc accgataaat ttgccacagc
     2701 taccatacta ttctttcagt ttgagtagct tagagagttt cacaacttat ctgtaagctc
     2761 atttaccgca tacgttttac cgctttatgc aaagattggt tctgtctctc caatgccatt
     2821 acattgctaa tagtccgctt gctgtgatgt gttttgaatt tgatttttaa agagcaatcc
     2881 ctttcgggta ggtttagaac ctttattcaa gccctccgca aagggctttg ataaaaattc
     2941 ttagtgaatg taggcttgcc aaagttgttg agcttgttct gcgttcattt tgtcgctttg
     3001 gttccagtcg attaacttgc catttctgaa catcgctctt tcaatcacaa actcttgcgt
     3061 ggttttattt tcaaagacct caaacacatt gatgaaatca ctactgcgtt tttctttgcg
     3121 tccgcataaa atgtagtctt tgtggttatt tagcgttgct cggcgttcat tttggtttcc
     3181 tctttgtctg tggcgttgtt tgttttgatg tgtttattat cacaaagtga aatcattaag
     3241 tcaattcaat ttgtaattat tttagccaag caaatttcaa ttcgtgatta aataa
//
LOCUS       DANLUT010000197         3276 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLUT010000197 DANLUT010000000
VERSION     DANLUT010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3276
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..218
                     /locus_tag="PXB38_002344"
     CDS             <1..218
                     /locus_tag="PXB38_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5354600.1"
                     /translation="IYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFPVV
                     RRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            240..1280
                     /locus_tag="PXB38_002345"
     CDS             240..1280
                     /locus_tag="PXB38_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5354601.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(1439..1726)
                     /gene="rplY"
                     /locus_tag="PXB38_002346"
     CDS             complement(1439..1726)
                     /gene="rplY"
                     /locus_tag="PXB38_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL5354602.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(1878..3146)
                     /locus_tag="PXB38_002347"
     CDS             complement(1878..3146)
                     /locus_tag="PXB38_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL5354603.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDPLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
BASE COUNT         1093 a          678 c          584 g          921 t
ORIGIN      
        1 acatctacac tgacttcctt tctcgtgaag agattgaatt tattactcaa tgcaagcaga
       61 aaaatctaat caaaaaacaa ctcaacatta tgggcattcc atttaaagaa aatgcaaatg
      121 gattccctgt tgtccgccgt gattatgctc aggctaaaca gcgtaaacct attgcaacga
      181 atgattctga ctgggtatca aatgcattta aagcgtaaat tgagaagaag gaggcactta
      241 tggcacgccc tcgaaaatat gaaaacaacg gattgccaca aaacctactc tgccgccgca
      301 gaaaacgagc aaacggaagt atagttgaat actactttta cgttcttgcc gacggcaaag
      361 aaaggtctct cggtacaaac aaacacgaag caattttaga agcagccaag ctaaattttg
      421 aaaatagtag aaaatcccca attgttttat ttattgatgt ggcaaaacgc tatgaattgg
      481 aagttgttcc aaccaaaaaa gccaaaaaca ctcgtcaatc taatttacag gctattcatt
      541 ggctatgtaa attctttggt aacccacctg caccgctcga aaaaattgag ccaaagcaca
      601 tcagtcaata tttacaatgg agaaaagaca cgccggctgt tgctaatatt gaggtaggtt
      661 tatttaacac aatttggaat atggcaagag aatggggata cactgctctt ccaagcccat
      721 cacaaggtgt aaaaaaattc ccgaccaaat atcgtgaagt ttatgtagag gattatatcc
      781 ttgataaaat ctatgaattt gcagatgaaa gaatggcgga tattatcgaa acagcctatt
      841 tgctgggaca aagaccgatt gatatttgta atatacaccg ctcacacatc tatgacggta
      901 tattgcatat tactcaacag aagacaggga aaaaagtgag atttgaaatt agtggtcggc
      961 taaaagaaat tttagataaa aggttgggat acgaatcaga ctggattttt accaataaat
     1021 gggggaaaaa attaaaacgg cgaagtttag gcgatcattt taaagaaata agggagagag
     1081 caatgaaagc atatcctgaa cttgctgatg aaatcgctaa agtacaaatg cgtgatatgc
     1141 gtgccaaagc agccaccgat atttccctaa tgacaaccga tgaacaagct caaaaacaac
     1201 ttgggcatac atcaaaaaga atgacacatc attacatcag aaaagacaaa atcctcaaac
     1261 ctaccgatga aatcacctaa aaataaagcc cttttgccaa atacaaaaga gccatttact
     1321 cacctaaaat ccgttccgaa actattttgt aaataattga ttttattgac ctaaaaaact
     1381 ataaaatcgc aaaaagtttc ggaacagaaa acagcgttaa acccttgtaa atcaaggatt
     1441 aagcacgttt gaagtctaag tgaactaatt ttggtttagt tgggtggcgt tgaattgctt
     1501 gtacttttac ttgctcttct ttacctgcaa caacgatagt taatacttcg ttatagaatg
     1561 aatcgtgaac ttgtgcgttg ttcactttat cgtgatctaa aatgattgat acaggctctg
     1621 cattaccacc gtagatgatt gcaggaactt gaccattgtg acgcaggcgg cggctcgcac
     1681 ccttaccttg cgcagaacga acttcagctt caaatttgaa tgacatagtt ttattctctt
     1741 aaataaaatg gggaaatccc cgtgaataga aaaaacagca ggcgacccag ctgtttccga
     1801 aaaaatatcg gcatatccgt ctcgatatgc cagctacgta ttttactgaa gttgcagaaa
     1861 aatgcaatgt aaaaatatta agcaaccagt tttttcaact gctctgcata agcttcccaa
     1921 tctgtaattg gtcgagttgc tacacctgat tgaattgctg cttttgctac accaatcgag
     1981 acattcacga tcaaacgtgg atcaaatggc gttggaataa tatattccgg gccaaacgat
     2041 aattcgccat aagttgaaat aacttcaaac ggcacaggtt ctttagccaa ctctgcaatc
     2101 gcatgggctg ctgccatttt catttcttca ttaatggttt ttgccccaac atctaatgct
     2161 ccacggaata agaacgggaa acaaagcaca ttattcactt ggtttttaaa gtctgaacga
     2221 ccggtacata caatcgcatc tggacggaca gccttcgctt cagcaggtgt aatttccggc
     2281 acagggttcg ctaaagcaag aattaatgga tcttttgcca ttgttttaac catttcttgc
     2341 gttaaagctc cgccttttga acaacctaag aaaacatctg cattcgcaac ggcatctgcc
     2401 aatgttctcc aaccattatc ttctattgca tagaattgtt tggtttcatc catcttatca
     2461 ccacgacctt ggaaaataac gcccttagaa tcgcacattg tgatattttc ttttttcaca
     2521 cctaatgaac ggagtaagtt agtacacgca atcgctgatg ctccagcacc gtttaccact
     2581 aaacgtactt ctgaaattgc tttacctacc acttgtaatc cgttaatcac cgccgcaccg
     2641 gtaataattg ccgtaccgtg ttgatcatcg tggaacacag ggattcccat acgttcacgt
     2701 aatttttgct ctacataaaa acattcaggt gctttaatat cttccagatt aatgccacca
     2761 aaagtcggtt ctaacgatgc aataatctcc actaatttct ccggatcagt ttcattaatt
     2821 tcaatatcaa acacatcaat tccggcaaat ttcttaaata gaacaccttt gccttccatc
     2881 acaggcttac ttgctaaagc accaatattg cctaagccta acactgctgt accattagaa
     2941 attactgcaa ctaagttacc tcgtgccgta taacgataag aagctgaagg atctttttca
     3001 atcgctaagc aaggctcagc aaccccagga gagtacgcta aagctaaatc gtgctgagta
     3061 tctaatgctt tagtaggagt aacggaaatt tttccgggga ttgggaactc gtgaaaatca
     3121 agcgcctgtt gttttaaatc gctcatttta gaaaccttat aatctataaa aataaaagta
     3181 atcaataata gccaaagagt agccatttta ccctaaattt tttcgcattt ttatggcttt
     3241 gctctcattt tttatgatat ttacaaaaaa taatac
//
LOCUS       DANLUT010000198         3184 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLUT010000198 DANLUT010000000
VERSION     DANLUT010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(233..1618)
                     /gene="hflX"
                     /locus_tag="PXB38_002348"
     CDS             complement(233..1618)
                     /gene="hflX"
                     /locus_tag="PXB38_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL5354604.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSPHIKYYVGQGKAEEIAEAVEQL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RQTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEDVEPHIERNADAMPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKTENCIKTEHFNEFGERMIYIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(1638..1910)
                     /gene="hfq"
                     /locus_tag="PXB38_002349"
     CDS             complement(1638..1910)
                     /gene="hfq"
                     /locus_tag="PXB38_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL5354605.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            complement(1979..2932)
                     /gene="miaA"
                     /locus_tag="PXB38_002350"
     CDS             complement(1979..2932)
                     /gene="miaA"
                     /locus_tag="PXB38_002350"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL5354606.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPIEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
BASE COUNT          841 a          671 c          695 g          977 t
ORIGIN      
        1 tatcagtggt agtaactgct tgattaagct tttcttcccc acttttgggg aagaataaat
       61 aaaatccttc aaatagaacg gggaaatctg gtttatttga gggatttttt attggctaaa
      121 ttggatttaa tggataaaac aagcggtcaa ttctttacac ttttttgcaa aaaaacgtaa
      181 agaattgacc gcttgcataa tttaaatata acttactcag aagtgagatt aattaccccc
      241 attttgccag ttcaatatat tcggctagat ccggaaattg tttcacccat ttgttccatt
      301 gcacttcgtt aatttcaata tagatcatcc gttcaccgaa ctcattaaaa tgctcggttt
      361 taatgcagtt ttctgtttta aattgtgcgt aaattgcacc ggcagtaacc gggaggagca
      421 agttttcaca cactaagtta ctgcgaagcc tttcttgaat ggcttggaat aacagctcaa
      481 tgccgctatt ttcttgggcg gaaagataca ccgcaactgg catagcatca gcattgcgtt
      541 caatatgcgg ttctacatcc tctaatttat cgattttatt gaatactaat aaagtaggaa
      601 tatctaacgc tccgatttcg tccagcactt gatttaccgc atcaatattt tcgtttttgc
      661 gttcgtctga gccgtcaatg acgtggagca gtaaagtagc ttcggtggtt tcttgcagag
      721 tagatttaaa ggctgaaact aaatcgtgcg gtagaaaacg gataaaacct accgtatcgg
      781 caagaattgt cgtgccgaca tcttgcacct gaatccggcg taaagtcggg tcaagggtcg
      841 caaaaagttg atcggcagca taaacaccag cttgggtaat cgcattaaac agggtagatt
      901 tgccggcatt ggtatagccc actaaggata ctgttggaat atcggctttt tgtctggttt
      961 gtcgattttg attgcgttgc ttgctgactt tttccaagcg gttgagtaac tgttggattc
     1021 gcactttaat caaacggcga tcggtttcga gctgtgtttc acctggacca cgcaagccaa
     1081 ctgctccgcc tttttgttgg tcttgattag taactcggcg aaccaaacgg gtcgataaat
     1141 ggcgaagttg tgccagctcg acttgtagtt tgccttcgtg cgatcttgcc cgttgagcga
     1201 aaatatccaa aatcaagccg gttctatcca ccacacggca gccgcataac gattgcaaat
     1261 tacgggtctg agccgggcta agttgatggt tcaccagcac tactgttgcc ccgagttgtt
     1321 ctaccgcttc ggcaatttcc tccgctttgc cttgccccac ataatatttg atatgcggac
     1381 tttggcggct ggtggtaagc gttgccagca cttcgacacc ggcagattct gccagcgttt
     1441 taaattccag caaattttca acatctttat gttgcccgag atagagatgc accaaaatgg
     1501 ctttatcttg attttctgga tcggtaggcg aggcggcttc tgtagtttgg cttgcttcag
     1561 ataaagcaaa gccaaacgca gaattttctt ctgagtttgg caatgattcg tttaacattg
     1621 gttgagtaat aatgttatta ttccgcttgt tcagttactt cggcagcagg ctgagcgtgt
     1681 tgggcttggt tgttattgtt atgcgataac gcacgggcag gaacaaccgt tgaaatagcg
     1741 tgtttataca ccatttggct tacagtgttt tttaataaaa tcacaaattg gtcgaacgac
     1801 tcgatctgac cttgtaattt aatgccgtta actaaataaa ttgaaacagg aatacgctca
     1861 cgacgaagtg cattcaaata tggatcttgt aaagattgac cttttgccat tgttattttc
     1921 ctttttatag ttgtgtgatt tttaagacac caaataatgc gataagtgcc aaaggcgttt
     1981 agatattatc acaattcttt aaataatgat cgatcttttc caccattttt gctttagaac
     2041 tggtcggagc taaactatct aaccaagtca gttcgccttg ccagccacgc agccaagtaa
     2101 tctgccgttt tgccagctgg cgggtggcac aaatgccttt aaagatcgcc tcatcgagcg
     2161 aaatatcgcc ttgcaaatat tcccacattt ggcggtagcc cacacagcga atcgagggca
     2221 aattaatatg caaatctttg cgtaaaaata accgcttgac ctcctcttca aagcctagct
     2281 caatcatttt gtgaaagcgt tgttcaatcc gttggtgtag aactgcacga tcttgaggag
     2341 cgattgcaaa ttgtaagata ttataaggta gagcctcacc ttgctgagca gtaagttcgg
     2401 tcatcgtttt gccggtaatg taaaaaactt ctaacgctcg gttgatccgt tggctgtcat
     2461 ttgggttaat tcttgcaccg gcaatcgggt cgattttcac taattcttga tgcaatgttg
     2521 cccagccgtg ttgtgccgct cggctttcga tttcagcccg aatggctgga tcggcagagg
     2581 gcaggggaga taacccttca agcaatgcct tgtaataaag cattgtgcca cccaccaaga
     2641 gcggaatttt accctgtgag gtaatatctg ccatttcacg caacgcatca gcgtggaaat
     2701 tcatcgccga atagctctcg gcagggtcta aaatatcaat caagcgatgc ggtgcaaggg
     2761 caagctcttc cttgcttggc tttgccgtgc caatatccat tcctttgtaa attaaggcag
     2821 aatcgacact gattacttca atcggcaatt cttggcgtaa agcaatagct aaatcggttt
     2881 tcccggaggc agtcggcccc attaaaaaaa gggcaagggg ttttttattc atattaatat
     2941 actgtatata gatacaaaaa aagccgtgaa attcacagct tttttgttac aatcctgatt
     3001 gtgctactgc tactggtagg ctcgttaggg ctattcgcag tagcctgagc ctaaatcatc
     3061 cttagtagca ctaaggaggc ttacaatgaa agaactacta ttgattttag ttgcacttgg
     3121 gtttctgtgt gcagcagttg aaattttcac gctctttcaa ctaatctatc tgttcttgta
     3181 agcg
//
LOCUS       DANLUT010000199         3137 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLUT010000199 DANLUT010000000
VERSION     DANLUT010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(63..1040)
                     /gene="rluD"
                     /locus_tag="PXB38_002351"
     CDS             complement(63..1040)
                     /gene="rluD"
                     /locus_tag="PXB38_002351"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL5354607.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1181..1960
                     /locus_tag="PXB38_002352"
     CDS             1181..1960
                     /locus_tag="PXB38_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL5354608.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKPKYGEQF"
     gene            2033..3064
                     /gene="tsaD"
                     /locus_tag="PXB38_002353"
     CDS             2033..3064
                     /gene="tsaD"
                     /locus_tag="PXB38_002353"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL5354609.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
BASE COUNT          934 a          675 c          626 g          902 t
ORIGIN      
        1 ttgtttactt atgaaaacga tttcaatata tcaactttac attatttaag caacacctaa
       61 acttaataat ctaattgatc tttataaagc tcataatccg cttttagtgc ctgaatcaat
      121 tcaataaaat catcaggtaa cggggcgtgc cactccatca tttcaccagt aatcggatgc
      181 tctaatctca acattgtggc gtgtaaggct tggcgttgga agcctcgtaa cactgataaa
      241 aacgagtcac tcgcaccttt aggtgggcga ggtctaccgc catagagctg atcacctaat
      301 aatgggtgag caatatgcgc catatgtacc cgaatttggt gagtacgccc tgtttctaat
      361 cttaaacgta aacgtgtgta attacgaaaa cgctccataa tacgataatg cgtaaccgcc
      421 ggttttccca ttgggtgaac agccattgcc gtacgtttag ttgggtggcg agccattggc
      481 tcatcaactt ttccgccctg tgtcataatg ccgctggcaa tcgcttcata ttcacgggta
      541 atacgacgtt tttgtaatgc ggttactaag tgagtctgtg ccggaatgtt tttagccact
      601 accattaagc ctgtcgtgtc tttatccaat cggtgaacaa tccctgctcg aggcacttct
      661 gcaatcggtg gataataatg tagcaaagca ttcagcactg taccgtccgg attaccagcc
      721 cctgggtgaa ccactaaatc cttcggttta ttaatgacga taatatcgtc atcttcatac
      781 acaatattta gaggaatatc ttgaggctca aaacgaattt cctcttctat ttcagcggta
      841 atttcaacag tttcaccacc aaatactttt tcccttgctt tattcacgat attgccatta
      901 actttcacta gatcactttc aatccacact ttaatgcgtg aacgagaata gtccggaaaa
      961 agttgtgcca gagcctgatc taggcgagca cctagtaaat ctgcagtaat ttctgctgtt
     1021 aaaatctttt gttgagtcat taaaccataa atcctaatta gtcatttgct tacttgcgtg
     1081 atgttatata gaatagcgag atgaacttca taagttattc ttagtcagag gacattgtac
     1141 attaactttt cgtcctagac actttttata ggtaaaacat atgcgtaaat ttaaatctct
     1201 tgccacatta gtattagccg gactgtttgt tgcaggttgt tcaaattcaa ataaagaatt
     1261 agaacaatcc aacgttcaag atctttatgg caaaggtcag acctatttac aagatggaga
     1321 ttataattct gccattcgct acttagaagc ggttggaacc aaaggaggcc aatattcagg
     1381 acttggtgag caaacccaac taagtttaat ttatgctcaa tataaagttg gcgaatacta
     1441 taaagcactt gatgccgcag aacgttttgc tcgctcttac ccgaatgcag ctaatatgga
     1501 ttacgtattc tatctagcag gattatcaaa tgcacgtcta agtgataatt ttattcaaga
     1561 cttctttggt gtaaatcgcg cctctcgagc cgtagataat gttcgtaatg cttacggtaa
     1621 cttccaaact attgtacagc gctaccctca aagccaatat gcacaagatg ctcaaaattg
     1681 gatgaattac ttatttaacc gtttagcgga acacgaatta gccgttgtta aattttatga
     1741 tgaacgtaat gcctatgtgg ctgtagtaaa ccgtatcgaa gaaatgttgc gtttttaccc
     1801 gaatacactg gcaaccaaac aagcattgcc atacttaaaa gaagcatata agcaaatgaa
     1861 tatcccagat gcagagcaaa aaacggaact cttgatccaa gaatatgaaa gcaaagagct
     1921 accgaatcct gaaaaaccga agtatggcga acaattctag tcgtacagag aataatgtga
     1981 ggggcgttct tcgccccttt tggttttcta acttattttg acttctccaa ctatgcgaat
     2041 tttaggtatt gaaacctctt gtgatgaaac cggtgttgcc atttatgatg aagacaaagg
     2101 cttagtggca aaccagcttt atagccaaat tgatatgcac gccgattacg gtggcgtagt
     2161 ccctgaactg gcttctcgag accatatccg taaaacgttg ccactaattc aagaagcctt
     2221 aaaagaggcc aatctgcaac cctcggatat tgacggcatt gcctatactg ccggcccagg
     2281 cttggtcggg gctttattgg tcggctcaac cattgcccgt tcgctggctt atgcttggaa
     2341 tgttccggca ttgggcgttc accatatgga agggcattta cttgccccaa tgttggaaga
     2401 aaatgcccct gaatttccgt ttgtggcatt attgatttca ggtggacaca cccaactggt
     2461 aaaagttgac ggcgttgggc aatacgaact actcggggaa tcaattgatg atgctgccgg
     2521 tgaagccttt gacaaaacag gcaaactact cggtttggat taccctgccg gtgtagcgat
     2581 gtcaaaatta gccgaatccg gcacgccaaa tcgttttaaa ttccctcgtc caatgaccga
     2641 cagaccggga ctggatttca gtttctccgg tttaaaaacc tttgctgcga atacgattaa
     2701 agccaatctt aatgaaaatg gtgaactcga tgagcaaacc aaatgcgata ttgcccacgc
     2761 attccaacaa gccgtggttg atactatttt aattaaatgc aagcgagcgt tagagcaaac
     2821 cggctataaa cgcttagtaa tggcaggcgg cgtaagtgcc aataaacaat tacgagcaga
     2881 ccttgcggaa atgatgaaaa aattaaaagg cgaagtattc taccctcgcc cacaattttg
     2941 cactgacaac ggcgcaatga ttgcctacac tggctttctt cgcttaaaaa acgatgaaca
     3001 aaccgactta agcattagcg taaaaccccg ctgggctatg accgaattac caccgattaa
     3061 ttaacctttc aagcggtgaa atttcttgtt aattttgcaa aaatttaatc aaaaataacc
     3121 gcttgctata tgataga
//
LOCUS       DANLUT010000200         3115 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLUT010000200 DANLUT010000000
VERSION     DANLUT010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..270)
                     /gene="ybgE"
                     /locus_tag="PXB38_002354"
     CDS             complement(<1..270)
                     /gene="ybgE"
                     /locus_tag="PXB38_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL5354610.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALW"
     gene            complement(270..368)
                     /locus_tag="PXB38_002355"
     CDS             complement(270..368)
                     /locus_tag="PXB38_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL5354611.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(383..1516)
                     /gene="cydB"
                     /locus_tag="PXB38_002356"
     CDS             complement(383..1516)
                     /gene="cydB"
                     /locus_tag="PXB38_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL5354612.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(1529..3079)
                     /locus_tag="PXB38_002357"
     CDS             complement(1529..3079)
                     /locus_tag="PXB38_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL5354613.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         1108 a          646 c          503 g          858 t
ORIGIN      
        1 ccataatgcc ggaataacaa taaggtaacc tagaagtggt aaaaaaatca ctttccaaat
       61 agcagctcgg atttcaaatc caattccatg tacccataaa atagccatac cataaaatac
      121 caacattgct aaatacggcg tttttccacc aaaagaaaga gcgaaagcgg tcgaatttac
      181 ccaaatagtt gcaaataata cagccgctaa aataaaagaa agggctttta acaagccctt
      241 tgctgttaag ttatagagtt tatgaatcat tactcgtcaa acttacctgt tttttcaatg
      301 ctgatcgtta tgactgttgc aaagaagatt gcaagcaata cacctaagac ccaagttaca
      361 taaaacatat tgtgtctcct tattagtaag ctgctttatt ttcttctaaa taactagcat
      421 ctaaacgacc atacattttg atatatgacc aaatagtata tgctaatact aacggtacaa
      481 agataccagc aacaaataac attacagtta atgttgtgtg gctagcagta gcgtcccaaa
      541 ccgttaagct catttctgga tgagtaattg acggcataat gaatgggaac attgatactg
      601 cagcagttaa aatcacccca acaatcatca atgatgatga gaagaatgct aaacctgaac
      661 gatttgcttt tgaggcaata atagtcagta atgcacctac tacaactaat gcaggaacaa
      721 cccataatac aggcatttca gcataatttc taaaccatgc accagcttga accgctacag
      781 ttttattcgt caatagagat tgtgcattat gatctaactc gcttgtgatc acaaaaccat
      841 ctttaaaata taaccataca cctgcaagaa taaatgccac taatacaata gaagctgtca
      901 cttgtgccac ttttcttgag ttgttatgta gctcatcagt agttttcatt tgtaaccaag
      961 ttgcaccctg tgtggttaac atcattaagc tgataatacc gcacactaat gcaaatggat
     1021 ttaataaacc aaagaatgaa cccgtatatt gtgattggtt aatattatta aattcaaatg
     1081 gtacaccttg taataagtta ccgaatgcaa caccgaatac taatgatgga acgaaaccac
     1141 caataaataa tccccaatcc caagcactac gccatttcgg attatcaatt tttgcacgat
     1201 actcaaaacc tacagggcgg aaaaataatg ctgcaagcac aagcaccatt gcaatataga
     1261 aacccgagaa cgaagttgca tagactgttg gccatgcagc gaagatcgca ccaccagcgg
     1321 tcaataacca tacttggtta ccatcccagt gaggggcaat tgtgttgatc ataatacgac
     1381 gttcaacatt acttttacca atgataggta aaaggtttaa tacgcccata tcaaaaccat
     1441 cagtaattgc aaagccaatt aacaataccg caattaagat ccaccaaata aagcggagaa
     1501 tttcataatc gatcatttct aactcctatt atttagttga ttgttcaaaa taataacggc
     1561 ctgtttttaa tgcactaggg ccaagacgac catatttgaa cattaaatac atttctacaa
     1621 ctaagaatag tgtatataaa ccacacaata agccgattgt aaaccataaa tcacctgttg
     1681 ttaatgcaga gtttgacaca ccgacaggta acatttcata gatagcccaa ggctgacggc
     1741 catattcggc aaggaaccaa ccagattcaa tcgcaatcca aggtaacgga agaccgaata
     1801 acaagcctct taataagaaa cggctacttt ctactttacc acgcatattt tgaataaatg
     1861 ctgtcgtaat caagataagc atcaagaagc cagataacat cattacacgg aatgcccaga
     1921 atgtagggcc tacatttgga attgtattat ctgctgcttt ttgaatttgt tcttcagtcg
     1981 catcaaccac attaggtgta tattgtttta acaataaccc aaagcctaaa tctttttgta
     2041 cagctttaaa tgcttcttta tccgcctctg tataattgcc agaacgtaat ttttctaata
     2101 gtccgtaggc taccataccg gtacgaacac gttgttcatt aattacacga atatctttta
     2161 ggcctttaat ttctttatct aaagaacggg ttgcaataat accagctgca taaggaatat
     2221 gaattgagaa ttcatttttc atttccgcag tatttggaat cacaaaagca ttccaagcag
     2281 ctggagcagg ctgagtttcg aattcacctt ccattgcagc taatttagtc ggctgagctt
     2341 taccgatttc ataaccagat tcatcaccca taatcagtac agagatgatc gcaattaaac
     2401 caaaacttgc acctactgag aatgaacgtt ttgcaaagcc taagtcacga ccttttaaga
     2461 tatagtatga actaatacct aatacaaaaa tagcaccaca aacatagcct gcggttacag
     2521 tatgtaagaa tttagattgt gtaactgggt ttaatacaag ttcagagaaa cttgaaagct
     2581 ccattcgcat ggtttcaaag ttgaattcag aagcaatcgg gttttgcatc caaccattag
     2641 caactaaaat ccatagtgca gagaagttag aaccaaacgc aacacagtaa gttgctaata
     2701 aatgtttcgc tttcgataaa cgttcccagc caaagaagaa caagcccaca aaggtagatt
     2761 ctaagaagaa cgccattaaa ccttcaatcg ctaatggagc gccaaaaata tcacctacat
     2821 aatgagaata atatgaccag ttcataccaa actggaattc cattgtaata ccagttgtta
     2881 cccctagggc aaagttaata ccaaataatt taccccagaa tttagtcata tctttatata
     2941 cttctttacc cgtagttaca tacagggttt ccatcaccac aaggacgaaa gaaagaccta
     3001 atgtaagcgg tacgaataag aagtgataga gtgcagttag agcaaactgc aaacgtgaga
     3061 gttcaactac atctaacatc tcaaacctct tatattaata tactaatttg acaat
//
LOCUS       DANLUT010000201         3066 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLUT010000201 DANLUT010000000
VERSION     DANLUT010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(239..1456)
                     /locus_tag="PXB38_002358"
     CDS             complement(239..1456)
                     /locus_tag="PXB38_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL5354614.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLQQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            1644..2948
                     /locus_tag="PXB38_002359"
     CDS             1644..2948
                     /locus_tag="PXB38_002359"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL5354615.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIISIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLYFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVAGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT          934 a          658 c          581 g          893 t
ORIGIN      
        1 gccttttaac atagtgataa gaaagtaatt attttttaat ttttcaaatc tcccctaccc
       61 ctcttttcta aagaggattg tcgagttcta aataaatgaa taatgttcgg aggtaggggc
      121 gggtccagtg cccgcccgca aattaatatc gttagcggac aggcacagga cctgtcccta
      181 ctgatattat agaacttaca accctgcttt tataaagtgg ggtaaaggga gattcgactt
      241 agtcttgacg ataggttttc aagaaattcg caaggcgacc aatcgcttct tcaatttgat
      301 gtgcataagg caaagttacc acacggaagt gatccggttt tttccagtta aaaccggaac
      361 cttgcactaa tagcactttt tcttgttgca acaaatcgta gatgaatttt tggtcatctt
      421 taatgccgta catttcggta tcaattttcg ggaacatata taacgcccct ttcgctttta
      481 cacagctaat acccggaatt tgtaccaata attcgtgcat tttatttcgt tgttccagca
      541 aacgaccgcc cggcaacaca aattcattga tactttgata accacctaat gcggtttgaa
      601 tggcgtgttg catcggcgta ttggcacata aacgcataga agagagcata tccaaccctt
      661 caataaaacc tttggcttga tgcttcggac cgctcagcac catccagccc tgacggaaac
      721 cggcaacacg atacgccttg gataaaccgt tataagttac ggttaatacg tccggtgcaa
      781 gagcagcaat atggtgatgt accgcaccat catagacaat tttttcataa atttcgtcag
      841 caaaaataat taagttatgc tgacgggcaa gttctgcaat ttccagcaaa atttgacggc
      901 tatacactgc tccggtcggg ttattcgggt tgataaccaa aatcccttta gtgcgaggcg
      961 tgattttcga tttaatatct tcaagatcag ggaaccactc attttcttca tcgcacaggt
     1021 aatgcactgc tttaccaccg gctagggttg aagctgctgt ccataacgga taatcaggca
     1081 ttggaattag aatttcatcg ccatcattta ataacgcctg catcgacatt gtaatcagtt
     1141 cagatacgcc gttgccgatg taaacatcgt ttacatccat accacgcata ccttttgatt
     1201 gataatattg cacaatcgct ttgcgggcag aatacaaacc ttttgaatca caatagcctt
     1261 gtgcggttgg aagattacga atcacatcca ctaaaatttc atcgggtgct tcaaagccaa
     1321 aaggggctgg gttaccgata tttaatttta aaattttatg cccttcttct tctaagcgaa
     1381 gtgcctcttt atgaattggc ccacggatat cgtaacgaac ctgagctaac ttatctgatt
     1441 tgggaaaacg atccattgta aacttcctat aatgtattat ctaattgtag tctcatcccg
     1501 ctgttcaaaa aatcggtaat tcggaatgaa tttgtaaaca ttactctaat ttgggaggaa
     1561 aaaaaagagg aaatacgtta aaatggagac ctttttttca atcagctaaa aacaagcggt
     1621 ttctttttct gatttttttg caaatgctta tttttcatca attaaaacaa gaacttacaa
     1681 aaagttactc aaaagtggga agagagcaag gattggtcgc cattcaagcc tctatgccgc
     1741 tattggaggc aaatattccg ctactcggtt ggttgaaaac acaaaaaaca agctaccctc
     1801 acttttttct gcaatatcgt gatacagatc agaccattgc caccattggc acacttcgcc
     1861 aattttatac gctagaagct gcacaatctt ttattcaaca acatcatttc ccgttaatcg
     1921 gcgggcttca atttgaaggc aatacgcaat ttattttgcc tcaattttca ttggtaaaaa
     1981 atcagcaaaa tttaaccgct tgcttctatt ttgatagtga taactttgaa caacaagcgg
     2041 ttatttttga acaatttctt gcaaatttca gccaaattac cgaattagga ctaacggata
     2101 atccgctcgt ttcaatgagt gccaccagcc attttgagca atggaaagcc aatattgaaa
     2161 aagcgattat ttctattgag cagggcgatt ttcaaaaagt ggtattggca aatgcgatga
     2221 gacttcattt tgagcaaccc atttgtgctt acagcttgct ggcacaaagc caaaaaacaa
     2281 atttaggttg ttaccacttt ttatgggcgg aaagtgctga tgttgccttt cttggctcaa
     2341 cccctgagcg gctatatcaa cgccaagggc tatacttttc taccgaagcc ctcgccggca
     2401 ccgctgcggt taccaccagt gaagtgcaaa ccgaactcaa tgcacaatgg ctgttaagtg
     2461 atcccaaaaa tatctatgaa aatcaattag tggttgatga cattgaaaac caactcaaag
     2521 attgcgtgac cgaatttgca gtatccgagg caaaaattaa gcgtttgcat aatgtgcaac
     2581 acctacgccg ccaaattcaa gcaacgctca aaccggacac ctcagattca gattgcttaa
     2641 gcaaaatcca cccaactgcg gcagttgcag ggcttccccg ccaaaaagca aagggtttta
     2701 ttaccgaaaa tgagcctttt acccgccatt ggtatgcagg tacattaggc gtaatgggca
     2761 acgaggaagc cgaattttgc gtaacactcc gttctgcatt aatttcacaa aattcaatta
     2821 cgctttatgc cggtgccggc attgtggcag gctcagatcc acaatcggaa tggcaagaaa
     2881 ttaaacgtaa ggcacaagga atggcaaaac tgttggatgt tgatttagta acaaaagggg
     2941 aactgtaagc tagactttca gaacttaatc tcttaattat ttctttctat attttcattt
     3001 ccaacttccc aacaaaatat attattgcca ccaaattagt agtgaatatt ccataattaa
     3061 aaaatt
//
LOCUS       DANLUT010000202         3065 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLUT010000202 DANLUT010000000
VERSION     DANLUT010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            34..2139
                     /locus_tag="PXB38_002360"
                     /pseudo
     CDS             34..2139
                     /locus_tag="PXB38_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S6"
     gene            complement(2349..2771)
                     /locus_tag="PXB38_002361"
                     /pseudo
     CDS             complement(2349..2771)
                     /locus_tag="PXB38_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(2901..3065)
                     /locus_tag="PXB38_002362"
                     /pseudo
     CDS             complement(2901..3065)
                     /locus_tag="PXB38_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019518307.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
BASE COUNT          939 a          643 c          611 g          872 t
ORIGIN      
        1 actccattaa tattagcaat ttattaacat tttatgataa ataaaaactt tccactttct
       61 taccttgcca gctttgtggc atttgctgtt agtttatctg caacagcctc tgttttcaga
      121 gatgatatcg atcttcaata ctaccgtgat tttgcggaga ataagggtaa attcaccgta
      181 ggtgcaagca atattgaaat taaagataaa agtggcaata cattagatgc actcttccca
      241 aatgtaccga tgccagattt tagtgctgca aaccgtaact tagggatagc aactctagtt
      301 gcaccgcaat atttagtcag cgttgcccat aatacacaat acaatactgt ggaatttggc
      361 gccccaggca ctaatgccga tgcacaccac tacacttaca aagtcgttga tcgtaacgac
      421 tatggaattg ttgaaggtgg gcaacatcaa gattatcaag tgccacgtct caataaatta
      481 gtcactgagg tcgcacctgc aacagtgact gatctgggta ataatgcttc agcctaccaa
      541 gatagtagtc gttttactca ctttgctcgc ttaggctctg gtcgtcaaat agtcaaaaat
      601 accgagcata aagacaacca aatttcaaca tcttaccaat atttaaccgg gggagttcat
      661 ttaccaatcg cggtacataa ttccgattac tggctagatt ttagaggaaa tgcattaaac
      721 aatagcccat atggagcatt aactgcattt ggtactcgtg gtgatagcgg ttcaggtgtg
      781 tatggctacg atcagaaaac gaaacgctgg ctactactgg ctacttacac ctttggtacg
      841 cctgcaaaca actactacaa ccgtgccggt attatccgtc aggattatca cgataaacaa
      901 tttgccgaag atattgccgg cacattaacc aatgcgcaac aaaatgccgt ttttgaatgg
      961 tctgcacagg gtaaagacag tagcattggt aataaaggga aaaacttaac ggtttcgctt
     1021 gctgatcgtt caattaaaga caatagcgct tctccattag gctatggtgg cacacctcag
     1081 ctacaacttc cgcaagataa caccggaaaa accctaaaca ttgaaggaca agatagcact
     1141 atcgtattaa aaaccgatat tgaccaaggt gctggcgcat taaatttcaa tgctaatgca
     1201 acagttcgcc ctgaaaatga tcaaagctgg gtaggagctg gaattgtagt ggcaaaaggt
     1261 aaacaagtta attggcaagt caaaaaccca caaggtgacc gtttatctaa attgggcaaa
     1321 gggacactac atattaacgg taaaggcgaa aaccttggcg acattagtgt tggacaaggc
     1381 actgtcattt tgaaccaaca agcgggtgaa aatggcaaaa aatctgcatt taaccaagtt
     1441 ggtattgtga gcggccgttc aaccgttgta ttaaacagtg ctgatcaagt cgatccaaat
     1501 aagatttact ttggcttccg tggtggtcgt ttagatctca acggcaacaa cattgcgttt
     1561 aatcgtattc aaaatagtga tgatggtgcg cgtattgtta ataatcacct acaaaaagct
     1621 gcaacactca ccattaatgg cccgaagccc cctgaagcaa cggacttaaa atggggaacg
     1681 tggaaagaaa acagtgctga tatttatgaa tatatcaacc cacatgctaa taaccgtacc
     1741 gattacttta cgctcaaagg caatccaaac caatatatgc caacgaatgg cgcaagtaat
     1801 gcccattgga ccttcctgtc ttctaacaag gatgcagcag taaaacaagt actcgcgcaa
     1861 aaaggtctgg agcatcgcta caatagcttt aatggtttta ttggcgaaac agataacacc
     1921 cagcataacg gtcgtttgaa tgtggtgtat gatccaaaag cctctacacc accggcaact
     1981 gcctctgaag taacttgggg taaggggcta gtagctggtg cagatattta tctgttcacc
     2041 aatccgaaaa cgaaaattcg ggaatacttt gcattaaaag gtgatccaaa acaacctgtt
     2101 cctcgcggtg gcttaagcag cgagcattgg gaatttttag tgtggggtac tgatcttttt
     2161 tgcatagaga gaaagaaaaa aatttgggcg gaaaaataac ggcgagcccc gtgaatacaa
     2221 gggttcgccg ttattgtttg gttggagcta tgcaaaaaac aaaatgagca ggattagaaa
     2281 aaaacgagca gtttttgcgt tattttttgc ataggtttga tcggttttaa aactatttta
     2341 aatctgtttt aaactaaaga atgcccgatg tgtaccactt gcccgatgat ttgtaggttt
     2401 tgggcttggt ctgctgtaat ctttattaac tcgtactctt ctcggttgtc tgaaataagc
     2461 tctacaccgt cccatagcag ttttacacgc ttaacccaaa cactgtcgcc gttttgtaca
     2521 atgtaaatat tattgtcgcc tcgtatctca ttacgactta aatcaactag tagctggtcg
     2581 ccattatcaa tagtcggata catcgagtct ccacttgccc aaaaaacagc acacttcttg
     2641 gcattaacac caagcgtatg caacaagcta tcagcataag gctcttgtcc atcaggtttt
     2701 gttacacatt cattaaagct cccaaagcct gcagatactt taatagatgc aaaactatca
     2761 atcattgaga ttatgttatt caaaacggtg cctgataatt cagatccttt gttttgctct
     2821 tcaggtgtaa tctctcttac tatgctatcc ttgattgcat ttattccact tttaaatccg
     2881 agtgcttctt gggctttacg aggcaatgaa gttatgtgat attcattccc cccacctttt
     2941 actccaactg catcacgttt tatccagagt tcttttaatg cctttcttgt aatgtttgtt
     3001 gcctgctttg gaaggtcagg caaatccaat tcttctagtt ctttggctga aaaccaaact
     3061 ttatc
//
LOCUS       DANLUT010000203         2971 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLUT010000203 DANLUT010000000
VERSION     DANLUT010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            136..2175
                     /gene="malQ"
                     /locus_tag="PXB38_002363"
     CDS             136..2175
                     /gene="malQ"
                     /locus_tag="PXB38_002363"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5354616.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSSRLWQNIIYIDVCAVEAF
                     QQSEQAQQWFNSEETQRQLAELRAKDYVDYSQVAQLKLKALQFAFEHFSQPSQQQSQT
                     EFNAFIEQAGEPLKIQATFDALHQWISSEFGEKGGWTNWAEEYQSYHSPKVAEFQTSQ
                     ATQIRFYMWLQFVANQQLAECNQFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLEDYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFNTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVMELEPNEVGVTMKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2243..>2971)
                     /locus_tag="PXB38_002364"
     CDS             complement(2243..>2971)
                     /locus_tag="PXB38_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL5354617.1"
                     /translation="GCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTWI
                     ATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQF
                     IGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGSA
                     LAILDGATVVISIVAQILMVLRYREQWALWIIVNMMTIALWTAMYFQNGETSLPLLVM
                     YVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          951 a          626 c          581 g          813 t
ORIGIN      
        1 acataaccct ttagagttaa attaaatttt tttaaaatca tatcacaaag acaaacctgt
       61 tgcctactct tcttactcat attaatcttc acaagatcgt tattttaaca aatacagtaa
      121 aggaaaaaag tcataatgtc aaacaaacaa aatacagctc actattttta ctccccaaat
      181 attaaagagt atgccagccc ctctgctttt gagaaaatag agcggctttt aaataccgat
      241 aacgatttgc aaaaaaataa tcaaattcta ccgcttgtta aagtgattac tcagccaaat
      301 gccgagcaac aagcggtcga aatttcgctg aattttacaa atgtagcaaa gtggcaaatt
      361 gtgcttgaaa atggtgaggt tcggaacggt gaaattaagg cagagcaatc agttctaacc
      421 ctgcctgccg atttgccttt aggctatcat cagctttcca tttcaactga aaatgatgaa
      481 gaatcttgct cgctgattgt aacaccgccg aaagctttcc agcctaagcc attggaagaa
      541 aggaaaaagc tctggggtgc atttttacag ctttatactt tgcgttccga taacaactgg
      601 ggaattggcg attttggcga tctcaaacaa ttccttgcca acatttctga ttatggtgca
      661 gattttgtgg gcttaaaccc tattcacgcc ctttttccgg cagatcctga tgcggcaagc
      721 ccttacagcc cgtcctctcg actttggcaa aatattattt atattgatgt ttgtgcagta
      781 gaagcctttc aacaatctga acaggctcaa caatggttta acagtgaaga aactcaacgg
      841 cagcttgctg aattgcgagc gaaagattat gtcgattaca gccaagtagc gcaactgaaa
      901 ttaaaggctc tgcagtttgc ttttgagcat ttttcacagc catctcaaca acaatcgcaa
      961 accgagttca atgcctttat tgagcaagcg ggcgagccat taaaaatcca agcgacgttt
     1021 gatgccttgc accaatggat ttcatctgaa tttggcgaaa aaggcggctg gacaaactgg
     1081 gcggaggaat accaaagtta ccattcgcct aaagtagcag aatttcaaac ctcacaggca
     1141 acgcagatac gtttttatat gtggttgcaa tttgtggcaa accagcaatt agcagaatgc
     1201 aaccaatttg ctcaatcact ttcaatgccg attggttttt accgcgattt agccgttggt
     1261 gttacccaaa gcggagcaga aacgtgggcg gataaagcct tatttgtgca agaggcgtca
     1321 atcggtgcac cacctgatat gctcgccccg aacgggcaaa gctgggggct ttctccaatg
     1381 cacccgcata ttttacaaag ccgaggttat cagccgttta ttgatttagt gcgtgctaat
     1441 atgaaacatt gtggggcatt gcgaatcgac catattctcg gctttgctcg tatgtggtgg
     1501 gtggcgaacg gtgaatcggc aaaagaaggg atttatgtcc gttatccgct cgaagatttg
     1561 ctctctattt tggcattaga aagccaacgt caccaatgtt tagtgattgc agaggctctt
     1621 ggcattgtgc ctgaaggtat tttggattct ctcgagcaaa aaggcatttt tgcctacaat
     1681 gttttttatt ttgaaaaggc agaaaacgcg tttaaaccgc tggaagatta tccttaccaa
     1741 gcaatgacaa ccctaagcac ccacgactta ccaaccattc aaggctattg gaaaggctat
     1801 gattttgagc taggcgaaaa atttaacact tacccaagca aagccgtatt gagaaagctg
     1861 aaagaagagc gttcgtatga ccgcttgaat atccgtaatg cggtggaaaa agtgatggaa
     1921 ctcgagccaa atgaagtggg ggtcacaatg aaatttaccc atcagctaca acgctatgtg
     1981 gctcacactc acagtgcatt attcggtaca cagcccgaag attggctcaa tatgttagag
     2041 ccggtgaaca ttccgggaac cagcaccgaa taccctaact ggagaagaaa attatccgca
     2101 accaccgagc agatttttgc aaataaagat attcaacaac tgctaaaaga tataaacgaa
     2161 attcgtaaag gataataaca agcggtcatt tttaggtaaa tttttacaaa aaatgaccgc
     2221 ttgtaatttg tatttattcg ctctattgct gatgttttct gtgaagttta atccagttgt
     2281 aataaccgta aatagagtta cataaataca tcacatacat caccaacagc ggcaagctgg
     2341 tttcgccgtt ttggaagtac attgccgtcc ataatgcaat ggtcatcata ttcacaatta
     2401 tccataatgc ccattgctca cggtagcgaa gtaccatcaa aatttgtgcc acaatcgaaa
     2461 taaccactgt tgcaccatct aatatagcta acgcactgcc taaatattta agcaattcaa
     2521 tataaagaaa tgtgccgata atggtggtaa tggcgacaat cacccactgt tttgcggtta
     2581 aagctttagc aattacctct tccacaccag cattatttac cgtgttttcg ctggtcatat
     2641 ttttacgcca gaaatagaaa ccgataaact gcaccggcac atatacaagt aaattcagca
     2701 tcatttcacc atataactga aaggtataag agatataagc ataaagcgaa acggaaatta
     2761 agccgaatag atagttactg atttttcctt taccgacaaa taccacgcat aaaatacctg
     2821 ttattgccgc aatagttgca atccaagtat cgggttgata aataaaaata ccgatttgaa
     2881 tcgctaaaaa aacaatcaac caacttgcct caaaagtggt ccaaccacta aaaaactctt
     2941 gttttaactt agttgaaaaa gatgaacagc c
//
LOCUS       DANLUT010000204         2955 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.205, whole genome shotgun sequence.
ACCESSION   DANLUT010000204 DANLUT010000000
VERSION     DANLUT010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..313)
                     /locus_tag="PXB38_002365"
     CDS             complement(<1..313)
                     /locus_tag="PXB38_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chain length determination protein"
                     /protein_id="HDL5354618.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQ"
     gene            462..803
                     /gene="erpA"
                     /locus_tag="PXB38_002366"
     CDS             462..803
                     /gene="erpA"
                     /locus_tag="PXB38_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL5354619.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(908..1231)
                     /gene="yidD"
                     /locus_tag="PXB38_002367"
     CDS             complement(908..1231)
                     /gene="yidD"
                     /locus_tag="PXB38_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL5354620.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(1180..1554)
                     /gene="rnpA"
                     /locus_tag="PXB38_002368"
     CDS             complement(1180..1554)
                     /gene="rnpA"
                     /locus_tag="PXB38_002368"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL5354621.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKQAQQNP"
     gene            complement(1590..1724)
                     /gene="rpmH"
                     /locus_tag="PXB38_002369"
     CDS             complement(1590..1724)
                     /gene="rpmH"
                     /locus_tag="PXB38_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL5354622.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            1961..2923
                     /gene="hemH"
                     /locus_tag="PXB38_002370"
     CDS             1961..2923
                     /gene="hemH"
                     /locus_tag="PXB38_002370"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL5354623.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDETLESFPQKGVKKVAVVCPGFSADCLET
                     LEEIAEENRENFEHTGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT          898 a          575 c          605 g          877 t
ORIGIN      
        1 attgtgctaa tcggttaaaa ttgttgaaca aactcgcaga caatgcattt ggatcaacag
       61 gatctacacg caaaatccga ctatattctc tgcgaacatt taaatactca cctaactctg
      121 ttaatttagg ggcaataact gttgccttag acgtccattg ctcttttgca gtaaatgcat
      181 aaataccagc aagtaatgtg gtaatgaatg ttgttataac aatccaccat tttttatccc
      241 atagagcacg aaaaatctca attaaatcaa tctcatccga gctttgctca tgacttttta
      301 ctgaatctgc catagtttcc tctaaaattt gcatgtttct gtacagcatt atacataatt
      361 ttcttatttc cactgcattc atttactctt ttttaagatt gcacttccta tgtaattatt
      421 agataatatc caatcacagt aaaattttga tctaaaacaa aatgagcgat attcaaattc
      481 ctttaatctt tactgatgcg gcggctcgta aagtaaaaag cttaattgag ggcgaagaga
      541 acccgaatct tcgcttgcgt gtgtatatta cgggtggggg ctgtagtgga ttccagtatg
      601 ggttcacctt tgatgatcaa gtcaatgagg gagaccttac cattgagaat caaagcgttg
      661 gcttggtggt tgacccgatg agcctacaat atttaattgg tggcacggtg gattataccg
      721 aagggctgga cggctcacgt tttgtcgtga ataatccaaa tgcaagctca acctgtggtt
      781 gtggttcttc ctttagcatt taattcactc gaattattgc cttattcaat atcagtctca
      841 caagtaaatt ttttactaaa aatgaccgtt tgtatcaaac aaaatagcct aacttattga
      901 gtttaggcta ttttttatca ttatgtttgc agttgccttt acaacaaagt gggacaggat
      961 cttcgcctcc ctcactcaaa gggttgcaac gcagaatacg cttaaacgct aaatacccac
     1021 ctttaattgc tccgtggatt ttaatcgctt cgaccgcata ggtggagcag gttgggtaaa
     1081 atcggcaacg tgggccaatc aatgggctga tagcatagcg atagaaataa atcggtagca
     1141 atagaatttt ggctaatagg ctgagacgag gtggctgatt tatggattct gttgtgcctg
     1201 ctttttgctc aggcgaatgt gtcttgacca tagtttttcc aatgtttcaa acagcgttgc
     1261 gttgtctaat ttgccaatgc cgccttttgc cacaaataca aaatcgaaat tcggcaattc
     1321 gtgttgcttg aggcgaaaac tttcacgcac tatccgctta atgcgattac ggtcgtgagc
     1381 ccgttttaaa tgttttttgg caacagttaa gcctagacga ggattttcta gattattctc
     1441 tctagcaaga agagtcattt ggggtgtgct ggctcgaagt ggctcttcaa acaccgcctt
     1501 aaattgaacg ggagctaaca aacgtagctc ccgagagaaa tttagcttct tcacacttaa
     1561 tcagaaaggt gttttggctg gttctgcaat tatgcagata aagatttacg acctttagca
     1621 cgacgacgcg ctaacacttg acgaccgttt ttagtagcca tacgagcacg gaaaccgtga
     1681 gtacgagcac gttttaatac tgatggttga aatgtacgtt tcattgctta tctacctaaa
     1741 atttaaaaag ttggcataaa atggtttctg ccaaacaagg accataaaaa agagttgcaa
     1801 ttctacaggc aattaaaata aaaagcaaga aacaatccaa gcacaactcg ggttgtttgc
     1861 aaaatttttg aaaaatacga ccgcttgtta taatcgcaga aatttatatt ggtttgtggc
     1921 ataatcgaaa aaatattaac tattgatgag aaatagaaca atgaatcaac cccaacaaat
     1981 aggtattttg ctggctaatt taggtacgcc agatgaaccc acgccaagtg cggtgaagcg
     2041 ttatttaaag caatttttaa gcgatcctcg tgtgatcgat ctaccaaaat ttaaatggca
     2101 agcaatccta aactgcatca ttttgccaag acgttcgcca aaagtggcaa aattatatca
     2161 atcagtatgg agcgaagaag gctcaccgtt attggcgatt tctcggcaac aacaacgagc
     2221 ggtacaacgc tattttgatg ccaaaggcaa aaatgtggtg gtggaattgg gaatgtctta
     2281 cggcaatcca agtattgaaa gtgcgaccga taacctcatc aagcaggggg ttgaacgaat
     2341 tattgtgcta ccgctttatc cgcaatacag tagcactact accgcttcgg tgtttgatgc
     2401 tttcgccaac ggcttaaaag cacaacgtaa aatcgtgccg tttgatttta ttcacagtta
     2461 tcataatgat ccgctttata ttcaggcatt agctaactct attgatgtta aacctgacga
     2521 gttattactg ttttcatttc acggcattcc taaacgttat gaaacggaag gtgattttta
     2581 cgccaagcat tgccaagaaa cagcagaatt agtggctgaa aagctaggtc tgccaagaga
     2641 aaaatggtat ttgtctttcc agtcccgttt tggtgatgaa gagtggctac agccttatac
     2701 cgatgaaacg cttgaaagtt ttccacaaaa aggggtaaaa aaagtggctg ttgtttgccc
     2761 gggcttctcc gccgattgct tagagaccct ggaagaaatt gcagaagaaa accgtgaaaa
     2821 ctttgaacac accggcggag aatcttatcg ctacattcca gcgttaaatg cgagtggcga
     2881 tcatatcaag gcattagtaa aattaatcga agcgaaaata taatataatt tgggcggata
     2941 ataaatccgc ccatt
//
LOCUS       DANLUT010000205         2934 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLUT010000205 DANLUT010000000
VERSION     DANLUT010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..599
                     /locus_tag="PXB38_002371"
     CDS             <1..599
                     /locus_tag="PXB38_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354624.1"
                     /translation="VGLISGRTFLLMSVISIALYFKWKYILPLIAFTALILFLAIVFP
                     ENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLFLPTLNQFISGDGLYYTETGGYYG
                     GSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVNWFEGSWIFTLSTIGILAILNIKA
                     DTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEAEYV"
     gene            592..1560
                     /locus_tag="PXB38_002372"
     CDS             592..1560
                     /locus_tag="PXB38_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5354625.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGILNEFNDISTKEKVRELLTRDSLSHIYSYPFDVKVVRNNPNVGAAQSRNVGATN
                     ATQEWLLFLDDDDRFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKH
                     KSELTKENILKANKVGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEP
                     LYVDEALTYCTFHTKRSSVSTDTTNTEKAIEYIQQTYIKTPEQANNFKLNSLYILSYP
                     HVMNLSRKAAGYYFEMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            1560..2360
                     /locus_tag="PXB38_002373"
     CDS             1560..2360
                     /locus_tag="PXB38_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5354626.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGTVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTMVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(2397..2903)
                     /gene="msrA"
                     /locus_tag="PXB38_002374"
     CDS             complement(2397..2903)
                     /gene="msrA"
                     /locus_tag="PXB38_002374"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5354627.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
BASE COUNT          865 a          512 c          613 g          944 t
ORIGIN      
        1 gtgttggttt aatttccggt agaacctttt tattaatgtc agtaataagt attgcactct
       61 attttaaatg gaaatatata ttgccactga ttgccttcac tgcgttaatt ctatttttgg
      121 cgattgtttt tccggaaaac cgttatgttg aacacgcctt agaaccggta attaatttat
      181 tgtccggcac cggaaaagtc agctcttcaa ccgataattt agtgaaaaac catctgtttt
      241 taccgacttt aaatcagttt atttccggtg atggtttata ttacaccgaa actggtggct
      301 attatggtgg atcggattcc ggctatattc gccaagtatt atatggtgga gtaagttata
      361 tgttggcgtg ttttgccttc acttactatt ttgtacgcaa agtggcggtg aattggtttg
      421 aaggcagttg gatttttacc ttatccacca tcggcatttt agctatttta aatattaaag
      481 cagatacctt tgctttcccg gggctgatga tgctgtttct aatgttcttg tcgctgtttg
      541 gaacaagcgg tcgaaatgta acattttttt gcaaaaacaa agaggctgaa tatgtttagt
      601 attattgtgc cttcttataa ccgtaatcaa gaaatcaatg cgttgcttga gagtttaaag
      661 caacaaacgg catataattt tgaagtgatc attgttgatg actgctcaaa aataccggtc
      721 agtgaaactt taggaatttt aaatgaattt aacgatattt ctactaaaga aaaagtaaga
      781 gaattactta ctagagatag tttatctcat atttatagct atccatttga tgtgaaagtg
      841 gtgcgaaata acccaaatgt tggggcggca caaagccgaa atgtaggggc aactaatgcc
      901 acacaagaat ggctactgtt tttagatgat gatgaccgct ttatgcctga aaaatgcgaa
      961 cgtttagcgg cagagattgc gaacaatcca actgccaatt ttgtgtacca cccggcaaaa
     1021 tgtgaaatgg taaatgaggg ttttacttat gtcaccaagc cgtttaaaca taaaagtgag
     1081 ctaactaaag aaaacattct aaaagcgaat aaagttggcg gaatgccgat gattggcttg
     1141 aaaaaatcac tcttttgtaa aattggtgga ttatctgacc gcttgcgatc acttgaagat
     1201 tatgatttct tactgaaatt attggaagaa ccgagttttg agccattgta tgtggacgaa
     1261 gccttgacct attgtacttt ccataccaaa cgctccagtg tttcaaccga taccactaat
     1321 acagaaaagg cgattgagta tattcaacaa acgtatatca aaacacctga gcaggcgaat
     1381 aattttaagc tcaattcgct ttatatttta agttatccac acgtaatgaa tttatcccgc
     1441 aaggcagccg gttattattt tgagatgttt aaacagacta aaaatatcaa acaactgatt
     1501 attgcgttgg ttatttttat ttcgccgaag ttggcgatta atttgaaaag gtttatgtaa
     1561 tgaaattttc cgttttaatg tcgttataca ttaaagagca accgcaatat ttaagagaat
     1621 gttttgaaag cttgaaagta caaactgtgc aggctgatga aatcgttgtt tgttttgatg
     1681 gtacagttac gcctgaatta gaggcgattg tagaagaata tagtgcaatt ttgccgatta
     1741 atgcggtgaa attcccacaa aatcgaggtt taggtaaaac gctaaatgat gggctaacct
     1801 attgtaagaa tgaatgggtt ttcagaatgg atacagacga tatttgtatg ccggaacgtt
     1861 tcgagaaaca agtggcattt attgaacaga atcctgaaac cgtgattttt ggcggccaaa
     1921 ttgctgaatt tgggcaagat attcacgatc ttgtcgctta ccgcaatgta ccaaccatgg
     1981 tggaggaaat cgtcagattc actcgcttgc gttgcccgtt taaccatatg acggttgctt
     2041 atcagaaatc caaagtgttg gaagtcggtg gctatcaaga tctgcaagaa gattactatt
     2101 tatggatcaa actcattgct caatttaaac aagtggcaaa cttgccggat ttattagtgt
     2161 atgcccgagt cggtaacgga atggttggca gacgccgtgg aatggcccaa gcagaggcag
     2221 aatggcgttt atataaatta aaaaaccgct gccagattca cgatccgatt tcaggttttg
     2281 ggattttcat aatgcgtgca attcctcgtt tattaccggt ttcagcactg aaaaaagtgt
     2341 acggtttgct cagaaaataa agctaaaaaa accacagatt gctctgtggt tttttgttat
     2401 tgattcttca aaatctcatt cattagttga atatcaatat ggcagtagcc gttcgggttt
     2461 tttactaaat attcttggtg gtactcttcg gcagggaaat attgctctaa catttggttt
     2521 tccactgcca gcggctgatc aaattgggtt tgtaattgtg caagtgcggc ggttaccacc
     2581 ggttcgtctt gtgggtcggt ataataaata ccggtgcggt attgaatacc gatgtcgcca
     2641 ccttgtttgt taatgctcac cgggtctatt actttaaaga agtaatctag taattttgcc
     2701 aggctaattt gattggcatc ataagtcact tttaccactt cagcgtgtcc gctaccggca
     2761 cacacctctt gatagcttgg gttatcggta ttaccgttgg catagcctga ttgtgcctta
     2821 atgacacctt taatccgttg cataaaagat tccacgcccc agaaacagcc accggctaag
     2881 taaatttcac gaatattttg catattacct ctctataatt gtaaattttt cgat
//
LOCUS       DANLUT010000206         2900 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLUT010000206 DANLUT010000000
VERSION     DANLUT010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            80..1093
                     /gene="cas1c"
                     /locus_tag="PXB38_002375"
     CDS             80..1093
                     /gene="cas1c"
                     /locus_tag="PXB38_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL5354628.1"
                     /translation="MRKLQNTLYITSQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADIQLAITALNYSLQQLKIADNLNLIRGI
                     EGDAAARYFGMFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSILGKDISGALQGV
                     GLDPQIGFLHADRPGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1160..1453
                     /gene="cas2"
                     /locus_tag="PXB38_002376"
     CDS             1160..1453
                     /gene="cas2"
                     /locus_tag="PXB38_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL5354629.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1643..2798
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1644..1674
                     /rpt_unit_seq="cagccacctacgcgtggctgtgaattgaaac"
BASE COUNT          812 a          602 c          655 g          831 t
ORIGIN      
        1 attgaatatc catatataag catagaataa tttataaaac ctatctaggt ttattgtcaa
       61 aattaaggaa attccaacca tgcgcaaact ccaaaacacc ctctatatca ccagccaagg
      121 tagttacttg cacaaggaac gtgaaacact agttgtggag caagatcgaa aaaaagtggc
      181 acaattaccg atacattcca tcgggcatat tttctgtttt gggaatgtat tggtatcgcc
      241 atttttaatg ggattttgtg gcgaaaataa cgtaaatttg gcgtttttta ccgaaaatgg
      301 gcgttatctt gggcggttgc aggggcggca aagtggtaat gtattgttac gccgagccca
      361 gtataaaaag tcggagacca accctgttcc tgtggctcgc aacatcattg cagccaaaat
      421 ccaagcatct aagcgagtgt tacaacggca aattcgtaat cacggcgaaa atgcggatat
      481 tcaattagca attaccgcat taaattacag cttgcaacag ttgaaaatag cggacaattt
      541 gaatttgatt cgtggtattg aaggcgatgc tgcggctcgt tattttggga tgttttctca
      601 tcttatcaaa gaaaatagcg gtttccactt tgacggacgt aatcgccgcc cacctcgtga
      661 cggtgtgaat gctttgctct catttcttta tagtatttta gggaaagata ttagcggggc
      721 attgcaaggc gtggggcttg acccgcaaat tggctttttg catgcagatc gtccggggcg
      781 agatagctta gctcaagata ttttggagga atttcgagcg tggtgggtgg acagaatggt
      841 gctgtcgctg atcaatcgag ggcaggttaa gcctgatgat tttgtgacgg aagccagtgg
      901 tgcggtaacg ctcaagcctg aagcaagaaa attactattt caaaccttgc aagcgaaaaa
      961 acaagaaaaa atcattcacc catttttaga ggaagaagtg gaaatcggct tgttacctta
     1021 tatccaagcg atgttattgg ctcgtcattt gcgtggcgat ttggcagaat atccgccgtt
     1081 tttaatgcgt taaaatctgc aaaattttgt tgaaatttga ccgcttgttt atgttttatt
     1141 cattgaggaa ttagcaacta tgctgatgtt gattacctac gacatttcat ttgatgaccc
     1201 cgaagggcag gctcgcctac gccgtattgc taagcattgt ttggattatg gtgtgcgggc
     1261 gcaatattct gtgtttgagt gtgatgttac tcctgctcag tgggtaacat tgaaaaataa
     1321 attattggca acttacaacc cagactgtga tagtttgcgc ttttaccatt taggcagtaa
     1381 atggaggaat aaagttgagc accatggcgc aaaaccttca gtggatattt ttaaagatac
     1441 gctgatttta taaatcgcta gcctgtagtt ctcataaaaa tgtagcaagg ttagcgaatc
     1501 tatattgttc tttaataatc aaggaattag aaaaaataag gcacagtata ttggcgatat
     1561 gctatacttt atccactctc tacaaaacgt tagcgaataa agggctaaaa agcctgatat
     1621 ttcaatacgt tatcttgtaa gggcagccac ctacgcgtgg ctgtgaattg aaaccgctta
     1681 ttgtcaaatc ttatttttaa aatttaccag ccacctacgc gtggctgtga attgaaactg
     1741 ctcatcagaa ccaacacgat tatactcaaa atgcagccac ctacgcgtgg ctgtgaattg
     1801 aaacatcagt aaacggctat atttgtttac tagctcaagc agccacctac gcgtggctgt
     1861 gaattgaaac ctttgttttt agcgttgcac cattgccccg ctttgcagcc acctacgcgt
     1921 ggctgtgaat tgaaacttac atattgccaa aggcaaccta aaagaccact cgcagccacc
     1981 tacgcgtggc tgtgaattga aactttttat tgttgatttt gacaatagac taatgttcag
     2041 ccacctacgc gtggctgtga attgaaacta ttttttgtat tttttaagaa ttttattaaa
     2101 ctgcagccac ctacgcgtgg ctgtgaattg aaactgattt actagacctt ttaacaaatt
     2161 ataaaaattg cagccaccta cgcgtggctg tgaattgaaa catcattcca gttttcagcc
     2221 gttcgccttg cggtggcagc cacctacgcg tggctgtgaa ttgaaacacc acctcctccg
     2281 agatggtagg caaggggatt agcagccacc tacgcgtggc tgtgaattga aacacccgct
     2341 tgcggtaaag ctctaggctc tcaccctgca gccacctacg cgtggctgtg aattgaaact
     2401 cttaaatcgc tatcgctctc ttcatctgcg ccaagcagcc acctacgcgt ggctgtgaat
     2461 tgaaaccaat caaggcggcc atttcggggg taaattcgtg cagccaccta cgcgtggctg
     2521 tgaattgaaa cagggataag ctcttcgccc tcgctgcatt gcattagcag ccacctacgc
     2581 gtggctgtga attgaaacgc ttacatctag acagacgagc aagtgctgaa acgcagccac
     2641 ctacgcgtgg ctgtgaattg aaacactgac atcggcgtaa atgcgtggaa gattttcgag
     2701 cagccaccta cgcgtggctg tgaattgaaa ctccgtgttt gtggttatgt tgatgtacag
     2761 gcaattgcag ccacctacgc gtggctgtgt attgaaacgg tgtacccaca aatcctatgt
     2821 tttcgccatt ggctgctacc ttcgcatcaa tatatattga aatatcaatg gcaaatttgt
     2881 atgttgttaa ttagactgat
//
LOCUS       DANLUT010000207         2892 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLUT010000207 DANLUT010000000
VERSION     DANLUT010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..438
                     /locus_tag="PXB38_002377"
     CDS             <1..438
                     /locus_tag="PXB38_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354630.1"
                     /translation="VNRCKPEIRATLIKYKKECYQALHDYWFKGKAERSQIAPIVEPK
                     IPMELTKKEWLRFASMWFALYNSLEVLATLEKPLRAIGSPFGATAYTHATEYQTTLGV
                     MKRILEPMLADFEVDPFEEAHYHKALTTLRQYQPKGLGGLVRI"
     gene            689..1546
                     /locus_tag="PXB38_002378"
     CDS             689..1546
                     /locus_tag="PXB38_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005633889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354631.1"
                     /translation="MKKILLIAPLAVALTACSPFSVDEGEIGLVTKYGEIIETKSAGL
                     HWRSWLEDDITFSTREQKIVLGAFDGNGDLAGGISAYTRDTQTVTTALTITYKLTDPV
                     AVYKNYRTTDNMINQLIEPRSRQALEVVFSEYTAQRALENRAKLTTDITSQIREAVKG
                     YPIEITAVQTVIQFNKEYEKRVEESVQKNVAIQTAERELIIQQKQAEIVKVNAQAKAD
                     AEVIQAKADAEKVRLAGEAEAAAIRAKGEALKENRQLVELTAAEKWNGVLPTTMTPNG
                     TVPFVKVGQ"
     gene            1546..1692
                     /locus_tag="PXB38_002379"
     CDS             1546..1692
                     /locus_tag="PXB38_002379"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354632.1"
                     /translation="MADVVQVIFHVVLSGVLCLSANMLWHSRKLMKRQIEEVELRIQK
                     LKQE"
     gene            1888..2325
                     /locus_tag="PXB38_002380"
     CDS             1888..2325
                     /locus_tag="PXB38_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354633.1"
                     /translation="MKTTQDILDEREQQHGNYDSFAKIYGGLRKVSDSHAEKLTWPQQ
                     IAVEMMLFKIARILNNGANHQDNYQDIAGYAMLGGGLYNPNVSAEVKALPKPLTDSIY
                     PESHLDKGSIWRLDLEFETKEEATEVLEALTGKSAGVSEVNNE"
     gene            2318..2611
                     /locus_tag="PXB38_002381"
     CDS             2318..2611
                     /locus_tag="PXB38_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354634.1"
                     /translation="MSESFSLEKALWEEPRPRLQLDLPCPVIKLEVGKRYYTINIHGV
                     DCYDGDMSFTEIDEWTYESIDDVQTKSRAEQGLLFASEADAQEWIDAMRNSSR"
     gene            2614..2823
                     /locus_tag="PXB38_002382"
     CDS             2614..2823
                     /locus_tag="PXB38_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354635.1"
                     /translation="MFRNELQVMDGKRYVVLECQFRREWRVAIESRSTVTNGEAIEIC
                     QYWVKYKGVKPEQLKIVEVPDILKE"
BASE COUNT          943 a          635 c          646 g          668 t
ORIGIN      
        1 gtcaatcgct gcaaacctga aatcagagcc acgctcatca aatacaaaaa agagtgctac
       61 caagccctgc acgattactg gttcaagggc aaagcggaac gttcacaaat cgccccgatt
      121 gtcgaaccta aaatcccaat ggagctaacc aaaaaagaat ggctacgttt cgcttcaatg
      181 tggttcgctc tctataacag ccttgaagtg cttgccacat tagaaaaacc gttgcgtgct
      241 attggttcgc cgtttggggc aaccgcctac acgcacgcta ccgagtatca aaccacgctt
      301 ggcgtaatga agcggatact tgaaccgatg ttagccgact tcgaggtcga tccgtttgaa
      361 gaggctcact accacaaagc cctaaccacc ttaaggcaat accagccgaa aggcttaggc
      421 ggcttagtcc gaatttaatt tgcaaaaaaa tcacacaatc cgaccgcttg tgaaacaaca
      481 agcggcggat ttccataccc aaattttgag gacaagccga tgaaatacgc aaaaatcatt
      541 ctatttttaa ccgcctttgc agttgctgcc gactacttag agttacacaa cgactgcgat
      601 ggcaaattct gcactatcgc acagcgataa tgcttccccg accctgcccc gtgcagggtt
      661 tattttatcc acccacaagg aaactcaaat gaagaaaatc ctccttatcg caccgcttgc
      721 ggtcgcactt actgcttgtt cgccgttctc cgttgatgag ggcgaaatcg gcttagtcac
      781 aaaatacggc gaaatcatcg aaacaaaatc agccggactg cactggcggt cgtggctaga
      841 agatgatatt accttttcca cccgtgagca aaaaatcgtt ctcggcgcat ttgacggcaa
      901 cggcgatcta gccggtggca tttccgccta tacccgtgat acgcagacgg taactactgc
      961 ccttacgatt acttacaagc tgaccgatcc agtggcggta tacaaaaact accgtaccac
     1021 cgacaatatg atcaaccaac taatcgaacc tcgcagccgt caagcgttgg aagtggtatt
     1081 cagcgaatat accgctcagc gtgcgttaga aaatcgggcc aagctaacta ccgacatcac
     1141 aagccaaatt cgtgaggcgg tgaaaggcta tccgattgaa attaccgccg tgcaaaccgt
     1201 gatccaattt aacaaggaat acgaaaaacg agtggaagaa agcgtacaga aaaacgtggc
     1261 aatccaaacc gccgaacgtg aactgattat ccagcagaaa caggcggaaa tcgtcaaagt
     1321 caatgcacaa gcaaaagccg atgccgaagt gattcaagcc aaagcagacg ctgaaaaagt
     1381 ccgccttgcc ggtgaagcgg aagccgccgc tattcgtgcg aaaggtgaag ccctgaaaga
     1441 aaaccgccag ctagtagaac tcactgcggc ggaaaaatgg aatggcgtat taccaaccac
     1501 aatgacaccg aatggcacag tgccgtttgt taaggtagga caataatggc tgatgttgta
     1561 caagtcattt tccacgttgt actaagtggg gttctttgct tatccgccaa tatgttatgg
     1621 cattcaagaa agctgatgaa acgtcagatt gaagaagttg aattgcgcat tcaaaaacta
     1681 aaacaggagt aaaaacatgt tcattttagg cattattacc ggtgtggccg ttgcattcgc
     1741 cacccaagcg ttcttccgtc aatataaatt gaccgaacga aataaagaca aatccgagta
     1801 aatgaactgt tcattgaaca aatgaacact tgacaaccgc ttgtagaact tgttccgcaa
     1861 gcggttattt ctaaaggaaa attcacgatg aaaacaaccc aagacatttt agatgaacgt
     1921 gaacaacaac acggcaacta cgacagtttt gccaagattt atggtggttt acgcaaagtc
     1981 agcgactcac acgcagaaaa gctcacttgg ccacagcaaa tcgccgttga gatgatgtta
     2041 ttcaaaattg cccgaatttt aaataacgga gcaaatcatc aagacaatta tcaagacatt
     2101 gccggttatg caatgttagg tggaggactt tataacccaa atgtgtcggc agaagttaaa
     2161 gcattaccaa aaccattaac cgatagtatt taccccgaat cacatcttga taaaggttct
     2221 atttggcggc tggatttgga gtttgagacc aaagaagagg caactgaggt gttggaagct
     2281 ttaactggta aaagtgccgg tgttagtgag gtaaataatg agtgagtcat ttagtttaga
     2341 aaaagcactg tgggaagaac cacgcccaag attgcaatta gatttacctt gccctgttat
     2401 aaaacttgaa gttggtaaac gctattatac aatcaatatt catggcgttg actgttatga
     2461 tggagatatg agcttcaccg aaattgatga atggacttat gaaagtattg atgatgtgca
     2521 gacaaaaagc agagctgaac aagggttact atttgccagt gaagcagatg ctcaagaatg
     2581 gatagatgca atgcgaaata gtagtaggta gctatgttta gaaatgaact ccaagtaatg
     2641 gacggtaaac gttatgtcgt acttgaatgc caatttcgcc gcgaatggag agttgcaata
     2701 gagtctagaa gtactgtaac gaatggagaa gcaatcgaaa tctgccaata ttgggttaaa
     2761 tataaaggag taaaacctga gcaactgaaa attgttgaag tgccagatat tctgaaagaa
     2821 taaggacaaa tgagttaaaa acggcgacat tataagtgcg gtaacactta aaatgccagc
     2881 tacgcaaagc ac
//
LOCUS       DANLUT010000208         2886 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLUT010000208 DANLUT010000000
VERSION     DANLUT010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(128..1819)
                     /gene="dld"
                     /locus_tag="PXB38_002383"
     CDS             complement(128..1819)
                     /gene="dld"
                     /locus_tag="PXB38_002383"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL5354636.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(2031..2886)
                     /locus_tag="PXB38_002384"
                     /pseudo
     CDS             complement(2031..2886)
                     /locus_tag="PXB38_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
BASE COUNT          800 a          657 c          561 g          868 t
ORIGIN      
        1 gggaaactct cactttttag agtgaattgt cagatcaagt ctgatcttct acacattagc
       61 aactgttttg tccacttggc atagtttttg acggatcagc aactattttg tctactatgc
      121 ctttttgtta cttccagtat tttttcttcg aggtttgccc gatccccgga ttaaagctgt
      181 tggttggatc aagctgccgg tagaatttgc gtaaggtcgg ttttgcttcg taaagatgac
      241 cgacattatg ctccgcaggg tattgtgccc cacgtttatc cagtaattct aacatctgat
      301 gttccaacgc caaacaatct acaccttttt tcacaatata gtcttgatgg aaaacatggc
      361 acataaaatg cccataataa agtttgtgcg tgatttgact ctctatttcc ggcggtagca
      421 cttcaaacca cgctttatca tttcggcgaa gggcaatatc taaagcaaca atatcttcca
      481 cctctttatc gtgaatggct cgatagcgaa tcgctgccga agcaacggca aaacgatgta
      541 acattgccgc ttggctttca gtcggattac actccaaata accgcctttt tgtgtatcag
      601 caaaataacg ggcaagatag tctcttgctt cttgaacgcc ttttccaccc attttgataa
      661 ttaagtgatg ttcatactgg ttacggtagt ctcgaagact ttccggcaaa tgttgcggta
      721 acatttttga gattgcctgt aatattttat cactgagatt tgccggtaaa aaggtgagtt
      781 tcttcgccat tctgtccact tttgctttaa gtgaaaagag ttgtggtaag cggtgtgtac
      841 cgagtttttt aatcacccaa aaagtatctt taccgtaatc agcggcaata tcaaaggcat
      901 cacgatgaat atattcaccg gaaatcggca atacctcaaa gttggctaac atatagcgac
      961 gaatatcgtt taatgtgtcc gtatgatttg tcccgatata aaaaacagcc gtgtcttttt
     1021 caagcggaaa ggtatctaat cgcaccgcaa acaccgctaa ctttcctgca ctaccggcag
     1081 cctcgtagtg gcgggcagga tcggcattaa aacgggcagg ggagtcttca tcaatttggc
     1141 ggacgtgatt acaataggcg tgatcgtgtc cttttccgca cgcttgctga atatccttac
     1201 gctgataacg ttgggcttgc agattttcta aaatttcttc cggcgtatca cctaaatcaa
     1261 tacctaaatg gttttttaat tccagcgtgc cgtcttcatt taactgggca aacagtgcca
     1321 tttcagtata agccggccca cgttgcacta atgcaccccc tgaattatta caaataccac
     1381 cgataaccga agccccgata caggacgatc cgatcaccga atgcggttca cgtccgtgcg
     1441 ttttcagcaa caattccagc tcatttaatg tcgagcccgg taagcaaacg acttgattgg
     1501 cattgttaat taactgaatg ccgttcattc gcattgtgtt aatgatcaca atatcccgat
     1561 cataatcgtt gccgcttggt gttgaaccac cggttaatcc ggtattggcc gcttgtgaga
     1621 taacaatgac atcggcggcg acacaggctt ttaatacgtt ccagtattct aataacgttg
     1681 taggttttac cactgcaatc gcactacccg tgccaaagcg atacccgcta cgataggctt
     1741 ccgtcttagt cgggtcagtg atgatataag actgcccgac aatttcagta agctgagaaa
     1801 tcagtgaatt atttgacatt atgcttccct caaaggtaga aatagatagg gcagtatagc
     1861 aataaacaaa agagagcaaa gcagaatgtt acaaaattgt gaactactgc acagaataaa
     1921 tgaagaaatg aagtaaaaga aagcgagcta aaagagcgtc gcccgcttta tttgtagaaa
     1981 atcaaaccta atctgacagt cccccgttta aaattaccgt gtctgtcaga ttaatttgag
     2041 cttaaattct tttctgccca aatgcgtttt ccatcaacta atgtctccat cggtgttctt
     2101 ccacagcaca tttttccttg atgggttcga tgatggttat aatacattaa ccattcatct
     2161 aagtcagctt gcaatgcctc taaatccata taaatccgtt ttctgaatgc cacttggtag
     2221 aactcctgca aaatcgtttt gtgaaaacgc tcacagatgc cgtttgtttg tggctgtttc
     2281 actttggttt ttgtgtgctc tatgtcattg atagccaaat aaagctcata atcgtgattc
     2341 tcaactttcc cacaatactc actgcctcgg tctgtcagca ctcgtaacat aggtaacctc
     2401 tggctttcaa agaatggtaa tactttgtca tttagcatat cagcagcagt gatagccgtc
     2461 ttcattgtat acagttttgc aaatgccact ttactataag tatcaataaa cgtttgctga
     2521 taaatacgac ccacaccttt aatattgccg acataaaagg tatcttgtga ccctaaatag
     2581 ccggggtgtg ccgtttcaat ttcaccacag gcaatctcat cttctttctt ccgctccaag
     2641 gcttgtatct gtggctcact cagaataatg ccttgctctg ccaccaattt ttcgagggca
     2701 gttaagcgtt gcttaaaatt agctaagtga tgtctcaacc aaatggaacg tacaccacct
     2761 gcagagacaa aaaccacctg cagagacaaa aatcccctgt ttacgcagtt cattactcac
     2821 tcgaacttga ccaaaagcag gattatctaa agcgaattgt acaaccgctt tttctgtgga
     2881 ttcatc
//
LOCUS       DANLUT010000209         2865 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLUT010000209 DANLUT010000000
VERSION     DANLUT010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(512..1024)
                     /locus_tag="PXB38_002385"
     CDS             complement(512..1024)
                     /locus_tag="PXB38_002385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354637.1"
                     /translation="MGKINYFDDIKIGNEIFSLSHLNPKYLEFYGQKVQKTLKLKVLY
                     SDHCFTARVNRLQSDSERVFSIERYNLSKLLPNIIEGLNNDKIQVFQTLARRNFAYVV
                     KTTLNDKDYNIFFEVKKSNNSNPDCDLVIRIESAYVFDNDCKLEYSGKIRFLILCQKI
                     YQGEKIQCRK"
     gene            complement(1024..1242)
                     /locus_tag="PXB38_002386"
     CDS             complement(1024..1242)
                     /locus_tag="PXB38_002386"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354638.1"
                     /translation="MATIVQKDVLIEAIAQVQGYLLRSLPSSDSMNDDELFLCELREK
                     IYNTHHDKLDYESLLADIVKIKNKSCYS"
     gene            complement(1253..1450)
                     /locus_tag="PXB38_002387"
     CDS             complement(1253..1450)
                     /locus_tag="PXB38_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin VbhA family protein"
                     /protein_id="HDL5354639.1"
                     /translation="MSNEELTPEVLARRAYHVRNALASFSLEGEYPSKEAEDLFNKFA
                     SGEIETIDELRVQINLLYSED"
     gene            complement(1458..1664)
                     /locus_tag="PXB38_002388"
     CDS             complement(1458..1664)
                     /locus_tag="PXB38_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005638143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354640.1"
                     /translation="MATLMEKDSLINGISQTLGLIVAQIGDRNEDSVMLATLRNKLYG
                     LDAEKIDYQGTAKLVKEKFNLYKL"
     gene            complement(1674..2651)
                     /locus_tag="PXB38_002389"
     CDS             complement(1674..2651)
                     /locus_tag="PXB38_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HDL5354641.1"
                     /translation="MANDLVVVKANSLIEASYRLSIDEIRILALTIGTMDPKSNQQIF
                     DFTVADFVREFPEISMDNAYKQIQAAIKRIYERSVRTEDSNRVTEFRWVSSRTYFKNE
                     GRFRIAMTNEVMPYLTQLKGQFTQYQLRHISSFNSVHSIRIYELVTQYRSVGYREITI
                     EDLKKWLQVEDKYPRFNNFKQWVLEPSITEINDKSDLLVDVEQIKRGRSIIALKFTIK
                     SKKSAVKAELKRPPFPHKNKYGKFVTLNRQDPRMSNHEYGLWAKDCLKILEGFYQKIE
                     DIPNEDLLFYWIFLTGNASNKSKLGTRKNFVDELKKRGYKIEHCELVKV"
BASE COUNT          930 a          526 c          414 g          995 t
ORIGIN      
        1 aaaaaaaaca aacctaaaac aagtaaaaaa ctaaaaaact aaaatataga gcctatcggc
       61 tcttttcggg ctttcagccc tattttttta tcttttttac actagaaaaa ccttttttaa
      121 ctttggtaat accaaataca acctaataat actaaataaa acctttttta tacctaaata
      181 ctacgttgtg tatattaaaa gtttacttaa atgagtgggc aagatatgta aactagacct
      241 actttttgca aagtatatct agtttactcg gataaattcg ctacagctca aatcctatat
      301 cttgtccttc ggagttttta caccaggagt gatgaatagg catcaatagc aaacttgaca
      361 tattgagaaa agacgccata atactaatac aacctatggc aacccgatga aatcgatcat
      421 aggacggctc agaaatgagt aaggtgcgat gccttggtaa gtgtattcgg ggtctattta
      481 agagaaaagc cacgttttaa cgtggctttt ctcattttcg gcattgtatt ttttcacctt
      541 gataaatttt ttggcaaagt atcaaaaatc gaatctttcc tgaatattcc agtttacaat
      601 cattatcaaa tacataagca ctttctatac gaataactag atcacaatct ggattgctgt
      661 tgttactttt tttgacctca aaaaatatat tgtaatcttt atcgtttagc gtagttttga
      721 ctacgtatgc aaaattacgt ctagctaacg tctgaaaaac ttgaattttg tcgttattta
      781 gcccttctat gatgtttgga agtaattttg ataggttata tctctctata gagaaaacac
      841 gctcagaatc gctctgtaag cgatttacgc gagcagtaaa acagtgatcg gaatacagaa
      901 cctttaattt aagcgttttt tgtacttttt gaccgtaaaa ttcaagatat ttaggattga
      961 gatgagagag tgagaaaatc tcattaccaa tttttatatc atcaaagtaa tttatctttc
     1021 ccattaacta taacaactct tatttttaat ttttacaata tcagcaagta atgattcata
     1081 atctagttta tcgtgatgag tgttataaat tttctcacgt agctcacaca aaaatagttc
     1141 atcatcattc atggagtcag aggagggtaa gctacgtaat aaataacctt gaacctgggc
     1201 aatcgcctca attaaaacat ctttttgaac tatagttgcc atttttacct tcctaatctt
     1261 cagaatacaa taaattaatt tgaactcgca attcatctat tgtttcaatt tcaccagaag
     1321 caaatttatt aaatagatcc tccgcctctt tagagggata ttccccttcc aaagagaaac
     1381 tagccagggc atttcttaca tggtatgccc gtcgagctaa aacttctggt gttaattctt
     1441 cattactcat aaaactccta tagcttatag agattaaatt tttcttttac aagttttgca
     1501 gttccttgat aatcaatttt ctctgcatca agtccatata acttattacg caatgttgct
     1561 aacataacac tatcctcgtt tctgtcgcct atttgagcta cgattaaacc tagtgtttga
     1621 gaaataccat ttatcaagct gtctttttcc ataagtgttg ccatattacc ctcttaaact
     1681 ttaaccaatt cacaatgttc tatcttgtat cctcgttttt taagttcatc aacaaagttt
     1741 tttcttgttc ctaattttga tttattgctt gcattacctg ttaggaaaat ccaataaaac
     1801 agcaaatctt cattcggtat atcttcgatt ttttgataaa aaccttccaa tatttttaaa
     1861 cagtcttttg cccataaacc atactcatga ttgctcattc ttggatcttg tcggtttaac
     1921 gttacaaact taccgtactt attcttatgt gggaatggtg gtcgttttaa ttctgctttg
     1981 accgcacttt tcttactctt aatcgtaaat tttaatgcaa taatactacg accacgttta
     2041 atttgttcta catcaacgag cagatcagat ttatcgttaa tttccgttat agatggctct
     2101 aaaacccatt gtttgaaatt gttaaaccta gggtatttat cttccacctg taaccatttt
     2161 ttcaaatctt caatagtgat ttcacgataa ccgacagagc ggtattgtgt aacaagctca
     2221 taaatacgga tagagtgaac actattaaaa cttgaaatgt gcctaagttg gtactgcgtg
     2281 aattgtcctt ttaactgcgt aaggtatggc attacttcgt tagtcatagc aatacgaaaa
     2341 cgcccttcat ttttgaaata agtgcgagaa gatacccagc gaaattcagt tacacgatta
     2401 ctatcttcgg ttctaacact acgttcataa atccgtttga tagccgcctg aatttgctta
     2461 taagcgttat ccatactgat ctcaggaaat tcacggacaa aatcggctac cgtaaaatca
     2521 aaaatttgct gatttgattt tggatccatt gttccaatcg ttaaagctag aatacggatt
     2581 tcatcaatac ttaatcggta actagcttca ataagactat ttgctttcac tacaactaaa
     2641 tcatttgcca taagactaga tatttcctgt taaaaaataa cctttaaaac tagataaata
     2701 ataacaccta gctaattaaa aagactagat aaattttaac atcaagtcga caacaggaaa
     2761 tttctagtcg tataacagga aatttctagt cgtataacag gaaatttcta gtcgtataac
     2821 aggaaatttc tagtcgtata agtttctaac ccattgtaat aaaag
//
LOCUS       DANLUT010000210         2850 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.211, whole genome shotgun sequence.
ACCESSION   DANLUT010000210 DANLUT010000000
VERSION     DANLUT010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            45..734
                     /locus_tag="PXB38_002390"
     CDS             45..734
                     /locus_tag="PXB38_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL5354642.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
     gene            complement(802..1593)
                     /locus_tag="PXB38_002391"
     CDS             complement(802..1593)
                     /locus_tag="PXB38_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5354643.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            1717..2721
                     /gene="fbp"
                     /locus_tag="PXB38_002392"
     CDS             1717..2721
                     /gene="fbp"
                     /locus_tag="PXB38_002392"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL5354644.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
BASE COUNT          885 a          600 c          541 g          824 t
ORIGIN      
        1 taaagtaaaa tggcacaact taacacttac ataaggaata gataatgtta caactgagaa
       61 aagccaatga acgaggcgat ggttctttta gctggcttaa aagctaccac actttttcct
      121 ttgccaatta ttacgaccta aaacatatcc atttttcaca tttacgggta attaacgaag
      181 atttcattgc acctaatcac ggttttggca agcacccgca cgataatatg gaaattttaa
      241 cttatatgtt aaaaggacgt gtggctcacg aagacagtat gggtaataaa accgaagtaa
      301 aagctggcga atttcaaatt atgtctgccg gaaccggggt tttccattca gaaattaatc
      361 cagatccgaa tgaaacctta cacctttacc agatttggat tatcccaaac caaaaagatg
      421 tgacccctcg ctacaaccaa gatagatttg ccccgaaaga gggagcaacc ttgattcttt
      481 cgccaaacgc agaagaaggt tcatttaaaa tttaccaaga tatgaagctg tggcgttatc
      541 aatacccaac agccaaatca gagcaactgg cattagagcc aaaccgcagt tactggctac
      601 aagtggtgaa agggaatcta aacatcaatg gcgttgaact ttccaccagc gatgccttag
      661 gcattcgtca agagaaagca cttgaaataa acactcaaga tgacgtggaa tttttactgt
      721 ttgatctagt gtaaatacaa gagacaagcg gttaaatttg taaaaaatat tactaattca
      781 gctgcttgct ctcattaaac attatcgcac caaaattctc actcctagcg tttcattttg
      841 ttgaagtaag gtatttatcc gtgctgtttc cacacatacc atattttgat acgccgtttc
      901 tgtcatcgca ctaacggtat tatgccaagg attccaaagt acggtttcgg tagcattgat
      961 atgctcaact ttaatggtgc gctgatttgc aaaatcttga ataaaattca ccgcttgtgc
     1021 cggataaata caatccacat tttcacttat cttgcgaggt gatggcactt caatttcttg
     1081 atttgtcaat ttatcaaaac attgtgttgc taagccttgt acttccgttt tcgtaatatc
     1141 accgacctga aaataagtat gcaatgcagc ctgtgccggc tccggtgcta agtgagtaaa
     1201 atacaactca cagacttcgc ctagtatcat ctcgagtttt gcctgatttt ctaaccccaa
     1261 aacaacacga atcccatctg ctgaggaagt atgttccagc aaattccacg cttgaatacg
     1321 ggctgtgccg tgagcaggct ttttgtctgt accaaaccaa gggtggcaaa tcggaatgcc
     1381 gccacgaatc gccacacctg tttggaaagg ttcaatttca cttaaccata atacatcttg
     1441 ctgagtattt ttaggttgcc aactcagtaa ctgcgcacct tgcaatgcaa ttttagcctt
     1501 cactttggag tgattaatct ctaaaacatc caattcatta tattttgcta atgctatttc
     1561 agggctgatc attttgattc gtagattatt catcgtattg ctcctcatct tgaaagataa
     1621 aatgtgaagt ggatcacaga attaaagctt aaaccgctac ctctttaaag gtaatcgtta
     1681 taataagggc attctaacat agcgaaggag aaaaaaatga aaacactcgg cgaatttatt
     1741 attgaaaaac aagcagaata cccaggggca aaaggggaat taagtgggat tttatcttct
     1801 attcgtttag ccgctaaaat tattcatcga gaaatcaacc gtgccggttt aagtcaagat
     1861 attttaggta ctgcaggttc tgaaaatgta cagggtgaag cccaaatgaa acttgatgta
     1921 ttcgccaacg aaacgatgaa aaaagcgtta cttgcacgtg aagatgttgc cggctttgca
     1981 tcggaagaag atgataattt tgttgccttt gataatgagc gtgggagaaa tgcaaaatat
     2041 attttaatga ccgatccgct tgatggctcc tccaatattg aagtgaatgt ttctgtggga
     2101 acaatcttct ctatttaccg ccgtgtctcc cctatcggca ccccagtaac acaagaagat
     2161 ttcttgcagg aagggcgtaa acaagttgcc gccggttatg ttacttatgg ttcttcaacc
     2221 atgctggttt acaccacagg caatggcgtg aacggtttta cctatgatcc gtcattaggc
     2281 ttatttattc tttcacaccc tgatctaaaa acccctaccg aaggaaaata ttactccatc
     2341 aatgaagggc agtatgttac tttcccacaa ggtgtgaaac gctttattaa gtattgccaa
     2401 gaaaccgatg aagccatcaa acgtccatac tcttcacgct atatcggctc gctggtgtcc
     2461 gatttccacc gcaatttatt aaaaggcggt atttatattt acccaacctc caccgtatat
     2521 ccaaaaggga aattgcgttt actctatgaa tgcaacccga ttgcgtttct tgccgaacaa
     2581 gccggaggaa tggcgacaga tggtattaat ccgattttag atattaagcc aacagagcta
     2641 caccagcgtg taccgttctt tgtcggttca acctcaatgg tcaaacaagc gggcgaattt
     2701 atgcaagaat ttgcaaaata atgctcctgc ttatcactca ataaaacttt caacaaagca
     2761 gctgcgtatt ccgtagctgc ttttgcctat cttaagattg taaatttgta taaaaaacag
     2821 gtaagacctc ttgccaaata aataattatc
//
LOCUS       DANLUT010000211         2814 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLUT010000211 DANLUT010000000
VERSION     DANLUT010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            24..2183
                     /locus_tag="PXB38_002393"
     CDS             24..2183
                     /locus_tag="PXB38_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5354645.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARYEQSKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
     gene            complement(2393..2788)
                     /locus_tag="PXB38_002394"
     CDS             complement(2393..2788)
                     /locus_tag="PXB38_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354646.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
BASE COUNT          910 a          498 c          556 g          850 t
ORIGIN      
        1 aaactaacta gaggatctaa aatatgcaaa taaagcaaac tgtattagca atagcgatta
       61 ctccctttat ttctcaactc tccttagctc aagaaacaaa gattagtagc attgaactag
      121 atactattga agtaaatgag cagcaggaga acctacttaa acagcaagcg gtgatgagca
      181 atgaagattt agtacgttat agtactgata tgggcgttcc gcaaacaggc cgctttggcc
      241 cacaagggtt taatatccgt ggtgttgaag gtaatcaagt ggcagtaaca gttgatggca
      301 tatcgcaagc agcatcaaat aactatgcca cctttagtcg ctatagttac tacaataaat
      361 ctcgccctga aatcgatact gaattaatga gcgatgtaac cattgaaaaa ggctcaagca
      421 caaaagtagg caatggggca ttaggcggct ctgtgaacta taaaactaaa accgtaagtg
      481 atattttaat gaaaggtcgc caatttggtg ggatgttgaa atatacctat aacggtcaaa
      541 ataaagagaa tattgagacg gcaggtattg ctgcggatgg tcaatatgcg gatgctttgg
      601 ttatgtatag ccaccgtcaa ggacacgaaa cacaaacaac gtctaaaggt ccggatatta
      661 tgggaagtgg tcgtggttta ccaaatcctt acaaaaataa tcaatacagc tacttggcaa
      721 aattagggct aaaatggaat gatgaaaatc gccttgaatt aaaaacttct aagcaacgca
      781 gtaaaaacgc cggtcaagag ctttcttatt ctaccgtcac attacgtgat tttttggatg
      841 tgcaggaaat tgaaacttat ggcgttactt atttatacac tccaaaaaac agtattcttg
      901 aaaatattaa agttgcggta accaaacagg atactgaaat ttcaggtatt aacgatcaaa
      961 tcactattgc ccgtggtaca aaaacagata ataccaaacg ggcttttaat actaaaaatg
     1021 ttgaaggtag cttaggtgtt acattcaagc ctgttgatct aggtaatacc gaacataaat
     1081 tgtcaacgga attaggctat ggtgtatctg atttcagttt tgatatgcaa acctatacag
     1141 caggtattac gccaaccgat caaaatatgc agtctccggc aaaaaccaag tctttccata
     1201 ttttgatggg agactctatt ttactgacac aaaatctatc tgctcattta aatgctcgat
     1261 atgagcagtc gaaattacat tctgatgata atagtttgtc agataaaacc tttaacaatt
     1321 gggcgggaga tattggttta aattatcagc tctctcctgt atggcaaatt ggctataaac
     1381 tcagccgtgg ttttagaaca cctaccgcaa gtgaaatgtt ctttaaccgt gaagttcaag
     1441 ggcgtggagc aagccaaact ttcttagcaa atactaactt aaaaccggaa acaagcttag
     1501 gtaatgaaat ttcactggta ggtaatggtt cattaggtag cttgagcgta gccgcttacc
     1561 atacccacta tagaaatctg attgatcttg ccactattgg taacaatatt taccaatcgc
     1621 aaaatgttaa ccgagctaaa atcaaaggtg ttgatattaa cggaacttta gacttaaaca
     1681 cagcgtggaa tgcaattcca caaggctttg agcttaatgg tggatttggt tatgctcgtg
     1741 gcaaacgtaa tgatggtacc gacttactca cggttcaacc gttaaaagca ttgttcggca
     1801 taggttatcg agctgtgaac aatgactggg cgatacacct aaacggcaca tacacacaag
     1861 gcaaaaaagc aaaatatgca caacagtatg ctattttagc caatactggg tatttaagtt
     1921 acgataaatc attaaccact tacccatact taagtaattc agccaccgta tttgacttag
     1981 ttgcacacaa aaagtttgga gaaagagcga ttgttaaagt tggggtttat aatctcttta
     2041 ataaaaaata ttggacttgg gatagtttaa gaactattgg tataactagt cctggagttg
     2101 ccaacagtat aactggcgaa ggcttaaatc gttaccttgc tccagagcgc tatgtaatgg
     2161 catcagtgga gtttaaattt tagagataag cattaaatgt aagagttaat ttttacgtac
     2221 ttatttcttt atagtaataa acaagcggtt aattttggcc cattttttgt aaaaaattaa
     2281 acaaatttaa ccgcttgttt ctggatagta gataaaaaca aaatgctttc ctatctgcaa
     2341 taaacagcta ttaaaaagcc acttatcaga gcggactcat tttacttttt atctattttt
     2401 gaggtgtgca acctttatat aaaatttcac ttgcggggct ttggatattt actgatgctt
     2461 tacggtggtt ggtaaattcc attggatcac cgtaaaggct gaaattgttt tcgtcaccaa
     2521 agttagtgcc ggttgcatct gtcgtgtata ggttgatcgg cataaaacgt tttttaccgc
     2581 ttaattttgc ctcagcatag gttggaatgc cttgtttatt gaagccgtat ttcacgctta
     2641 attttttgcc gttttggcag ctatacttaa cagttgaggt ttttacggtg ctttcgtggg
     2701 cttctcttgc atcactttgt tcacctgctg catgggctaa attgcttaca atcatggcag
     2761 ttgttgcgaa tatcatcaat tttttcatat attctccttt aaataagcgt tatc
//
LOCUS       DANLUT010000212         2803 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLUT010000212 DANLUT010000000
VERSION     DANLUT010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(419..1522)
                     /gene="glf"
                     /locus_tag="PXB38_002395"
     CDS             complement(419..1522)
                     /gene="glf"
                     /locus_tag="PXB38_002395"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HDL5354647.1"
                     /translation="MRKYDYLIVGVGLFGTIFAYEATKRGKKCLVIEKRDHIGGNCYT
                     QNIEGINVHKYGAHIFHTSNKLVWDYIQQFAEFNRFTNSPVARYKDELYSLPFNMLTF
                     NKMWGVIKPEEAEAKIKEQIAQEHITEPKNLEEQAISLVGRDIYEKLIKGYTEKQWGR
                     KCTELPAFIIKRLPVRYTYDNNYFYDTYQGIPIGGYTGIFERMLDGIEVKLGVDFFLE
                     REYYENLADKIVFTGMIDEYFGYRFGRLEYRSLRFDNELLDIPNFQGNAVVNYTEAEV
                     PYTRIIEYKHFEYGIQPKTVMTREYSKEYEQGDEPYYPINDARNNELYAKYKVLADEK
                     SNVIFGGRLAQYKYFDMHNIIAEALACVDKHFK"
     gene            complement(1749..2597)
                     /locus_tag="PXB38_002396"
     CDS             complement(1749..2597)
                     /locus_tag="PXB38_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5354648.1"
                     /translation="MDAKVEDRRITDLKARISALNLISMVNFTDRISVNWGDYSQIQV
                     EMLLFKKAHRNSSYAYYHLLSGVDLPLVSQDTIHQFFDKHQGKEFLTIVSKESFERNK
                     IYDRVRIHYWAPHISERTFSNKLIGKFFQKFIRSSELYMKRICSADKFKTFGTALGYA
                     SQWVSITDELVTILLDEELWIRDVFSHSLFCDELFIPTIINKYGWESRIYYSKGMVND
                     PEEFQGNLRYINWWDGSPYTWTDSSEDFSSLEKAINRGHFFARKFDIQTYPAMIDFIK
                     ARTQFS"
BASE COUNT          988 a          518 c          359 g          938 t
ORIGIN      
        1 ttaaattaaa caacatcttt ttaacaaaaa tcttaaagac aggaattgta attgaagata
       61 tacagaatat tagtattaat gtacttcttg aataaaaatc cgcattctgc cccaaagcta
      121 atgctgcaaa caaaataata aaagataaaa agcaagctct aaccactaac ttgctttcgt
      181 gccaaaactc aaatcttcta ttgtagacac caaaataagc aagaagaaga ataagagtaa
      241 catatacggc actaaatgta atataagaat atgttattac cggcatatcc caaaaaacat
      301 ttaatacctt tcttaatgat actgcacata ttattgaaac aagtatggca aatatatcaa
      361 aaataattaa tgttatcgca gaaattatct tattcaaaat attccccttg caaattatct
      421 acttaaaatg tttgtctaca caagctaagg cctcagcaat aatattgtgc atatcaaaat
      481 atttatactg agctaaacgt ccgccaaaaa tcacattgct tttttcatca gctaatactt
      541 tatatttagc ataaagctca ttatttcttg catcattaat tgggtaatat ggttcatctc
      601 cttgttcata ttctttcgaa tattcacggg tcattactgt tttaggttgg ataccatatt
      661 caaaatgttt atattcaata attcgggtat aaggaacttc tgcttccgta tagttaacta
      721 ccgcattacc ttgaaagttt ggtatatcta ataattcgtt atcaaaacgt aaacttcggt
      781 actctaatct gccaaaccga taaccaaagt attcatcgat cattccggta aacacaattt
      841 tatcagctag attctcataa tattcacgct caagaaagaa atctacacca agttttactt
      901 ctataccatc tagcattctt tcaaaaatgc ccgtataacc accaatcgga ataccttgat
      961 aagtatcata gaagtaattg ttatcgtaag tgtaacgcac aggtagacgt ttaataataa
     1021 aagcaggcaa ctctgtacat tttctacccc attgtttttc cgtatagcct ttgattaatt
     1081 tttcataaat atcacgacca actaatgaga ttgcttgttc ttccagattt ttaggttctg
     1141 taatatgctc ttgagcaatt tgctctttaa ttttggcttc agcttcttcc ggtttaatta
     1201 ctccccacat tttattgaag gttaacatat taaatggcaa gctatagagt tcatctttat
     1261 aacgtgcaac cggtgaattg gtaaagcgat taaattcagc aaattgttga atgtaatccc
     1321 aaaccaattt attgcttgta tggaaaatat gagcaccata tttatgtacg ttgatacctt
     1381 ctatattttg agtatagcag ttacctccaa tatggtcacg tttttcaatt accaaacatt
     1441 ttttaccacg ttttgtggct tcataagcaa aaatagtccc aaaaagacct actccaacaa
     1501 taagatagtc atattttctc ataagaatgc cctaatttat attaactaat atctaaattt
     1561 attatcatct atagctataa ctttcttccc taaaattagt ctacttagga aatgatttct
     1621 gaactcacca gaacttactt cttttaagcc ctctttcata ctgtaattta tccaggcata
     1681 aaacaaaaaa cactcattcc atagtcttaa ttacgaaaag aattagtaag aagtattaac
     1741 tcataaattt aagaaaactg cgttctcgcc ttaataaaat ctatcattgc tgggtaagtt
     1801 tgtatatcaa actttctagc aaagaaatgc cctctattaa tagccttctc taaagaggaa
     1861 aaatcttcac tcgaatctgt ccaagtgtaa ggagaaccat cccaccaatt aatatatctt
     1921 aaattacctt gaaattcctc cggatcattt accatccctt ttgaataata aatcctagat
     1981 tcccacccat atttattaat aattgtagga ataaataatt catcacaaaa tagtgaatga
     2041 gaaaaaacat ctctaatcca taattcttca tcgagcagga tagtaactag ctcatctgta
     2101 atgctaaccc actgtgaggc atatcctaaa gccgtaccga aagttttaaa tttatctgca
     2161 ctacatattc ttttcatata caattctgaa gatcggataa atttttgaaa aaatttacca
     2221 atcaacttat tactaaaagt tcgttcacta atatgtggtg cccaatagtg gattctgact
     2281 cgatcataaa ttttatttct ttcaaatgat tctttcgaaa ctatagtcag gaattcttta
     2341 ccttgatgtt tatcaaagaa ttggtggata gtatcttggc tgactagagg taaatcaaca
     2401 ccagatagca aatgatagta agcatagctg ctatttctat gagctttctt aaagagaagc
     2461 atttcaacct gtatttgaga ataatcgccc cagtttacag aaattctatc agtaaaattt
     2521 accattgata tcaaattcag agcactgatt cttgctttca aatcagtaat acggcgatcc
     2581 tctactttag catcaataaa taaatatcat ttctaggatg attaagtaac tcaattaaaa
     2641 agagtaattg ctcaaatttt tcatgtgcaa ttataagata agcatgcttt ttagacataa
     2701 taaacctgtt tttgatgaat acaactagat tttctcacaa agctctaatt agccttttca
     2761 gaagctaaag catacaagat aactctaatc ccagcagata taa
//
LOCUS       DANLUT010000213         2744 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLUT010000213 DANLUT010000000
VERSION     DANLUT010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            89..307
                     /locus_tag="PXB38_002397"
                     /pseudo
     CDS             89..307
                     /locus_tag="PXB38_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
     gene            complement(359..574)
                     /locus_tag="PXB38_002398"
     CDS             complement(359..574)
                     /locus_tag="PXB38_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354649.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            1119..1820
                     /locus_tag="PXB38_002399"
     CDS             1119..1820
                     /locus_tag="PXB38_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354650.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            2074..2250
                     /locus_tag="PXB38_002400"
     CDS             2074..2250
                     /locus_tag="PXB38_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354651.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            2338..2721
                     /locus_tag="PXB38_002401"
     CDS             2338..2721
                     /locus_tag="PXB38_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354652.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEEDQIRCPKTYAKL
                     REILEANEENVVRIGNVSISIGSTT"
BASE COUNT          870 a          608 c          543 g          723 t
ORIGIN      
        1 ttgacaccgc caaacttcgg attaagataa ccgcactttc aagccgtcca ccaacggctt
       61 tttttgtacc taaaaacgga gaaacgaaat ggcaaatagc gtaatgattg tacaaggcgt
      121 ggaggtcaaa gtaaccgctc gtgatggtga ggattacatc agcctaactg atatgtgcaa
      181 agcttttgga gacagcgacc agctcattaa aaactggctt caaaataaaa ataccattga
      241 atttcttcaa gtttgggaag agctgaataa tccaaatttt aatttggtgg aattacacca
      301 aattaaatgc aacaactaat taaaaacatc gaacagtgaa gggtaggttt ataggggctt
      361 acgccccttt tgaaaactgc tcaaccgctt gaacgattac ctgtgtttgc gaaatgccgt
      421 gttgttctgc aagctgttca agttgagcaa taaaatcttc gtggaacttg aatgacttca
      481 atcgcacacc acgctttgca tcgctttttg cttgtaattc ttgaagcgtt aaacctgatt
      541 tagggcgacc acgacctcgt ttctctgttt gcattgtcaa ttccttgttg atttttaata
      601 cggaacgtta tattatttag gaactgccta gcagagatgg cgttctctgc taggactttt
      661 agctttctaa tctaataagc tggcgtgctt attaagatta agatcactag gattaacaac
      721 ttaagataca taatccagtt cctgatgttt gccgctctct tcaagggcgg cttcttcatt
      781 ttcagaccct ttccgaaaac aagattattt taatacatac caaataaaac gcaagctatt
      841 ttttagtatt tattaaaata attttatttg acaaccgcca aactttaact tactattccg
      901 cccaaggtgt cgaaacctca tactctaagg cggatagttc actaatcgcc actaggcgat
      961 ttttttatat ccgtaatcct gactatgtcg ggagggcgac taatacaaga ccgaaaggaa
     1021 atacgtccag cccttacctt agagtgggtt ttcgaacctc ccgacgccac tgtcgaaagt
     1081 ggcttgtttt aaacaaatag actctaagga ttacgactat gtcaactcaa atttctactc
     1141 aaaccatttc tttcaacaac caagccttaa tcacattcga gcaaaacggc acacattaca
     1201 ccgcaatgaa accgatctgc gaaaatatcg gcttgacttg gcacgctcaa tacgaacgga
     1261 tcaaacgaga tgaaatcctt tcgcagggta ttcttatcat aagaatacct acaaacggtg
     1321 gcgatcaaca aatgatctgc ctcccaattg aatacctcaa cggctggctc ttcggcattg
     1381 acatcaatcg ctgcaaaccc gaaatcagag aaacgctcat caaatacaaa aaagagtgct
     1441 accaagccct gcacgattac tggttcaagg gcaaagcgga acgttcacaa atcgccccga
     1501 ttgtcgaacc taaaatccca atggagctaa ccaaaaaaga atggctacgt ttcgcttcaa
     1561 tgtggtacgc cctctacaac agccttgaag tacttgctac gttagaaaaa ccgttgcgtg
     1621 ctatcggttc gccgtttggg gcaaccgcct acactcacgc caccgagtat caaaccacgc
     1681 ttggcgtaat gaaacggata cttgaaccga tgttagccga cttcgaggtc gatccgtttg
     1741 aagaagctca ctaccacaaa gccctaacta ccttaaggca ataccagccg aaaggcttag
     1801 gcggcttagt ccgaatttaa tttgcaaaaa aatcacacaa tccgaccgct tgtgaaacat
     1861 caagcggcgg tttcctgcac ccaaaattca aggattaggc gatgaaatac gcaaaaatca
     1921 tactcttttt aaccgccttt gcagttgctg ccgactactt agagttacac aacgactgcg
     1981 atggcaaacc atgcactatc gcacagcgat aatgcttccc cgaccctgcc cgtgcagtgt
     2041 ttatttttat ccactctcaa taggagaaac gaaatgacag aagaagacaa agaatatctt
     2101 caaactaaaa ttgaaaacga aggttttgaa tacgctttcg tcagttatag tgactttgaa
     2161 gaagtccaag atgaaaaatt ccacgggctt cgcaaggctt atttaaaagc tcgaagtgag
     2221 ttagcggaat atattgatat tgaagattaa ccactgatga actgttcatt gaacaaatga
     2281 acacttgaca accaaccgct tgtagctaac tgcaagcggt taatttttgg aggaaaaatg
     2341 cacatagaag acaaaatcgc ttggtggctt gccaatggag agacaggggt aagcagtaaa
     2401 acaatggctt tttaccttgg ttacggaata agaccaaaaa tagaaggcta cccacacgat
     2461 gtatcggatt tcaggcgttg ctttctgttg ttggagacag tccctttttt gcgaaatagg
     2521 attgaaaaaa tggctgaact tgggaaagtt tgggctgcac ttgcaaaaga atggcacaca
     2581 ttagaggctc tctacaacga agaggaagat caaataagat gccccaaaac ctatgctaag
     2641 ttgagagaaa tcctagaagc caacgaagaa aatgttgtcc gcatcggtaa tgtgagcatt
     2701 tcgataggtt caacgactta acgattattt aactcaatcc ctct
//
LOCUS       DANLUT010000214         2706 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLUT010000214 DANLUT010000000
VERSION     DANLUT010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(303..1376)
                     /locus_tag="PXB38_002402"
                     /pseudo
     CDS             complement(303..1376)
                     /locus_tag="PXB38_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978718.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
     gene            1530..>2706
                     /gene="lpxB"
                     /locus_tag="PXB38_002403"
     CDS             1530..>2706
                     /gene="lpxB"
                     /locus_tag="PXB38_002403"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL5354653.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVTGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
BASE COUNT          763 a          490 c          565 g          888 t
ORIGIN      
        1 taataacccc tcatcacttt ttgcagttta acctcttttg caacagataa tttaaattta
       61 ggcgttttgg ctgctcagtt attgccatta tgattatatt agttcacact aaaattttag
      121 tgttgtttct taaagctgaa gatgctaata ggtgagtaag cggtttttac cactttgaag
      181 ataaatgcaa tagcttcttg tttgaaggat tagttgtatt taatcataaa aaatctgcac
      241 cttaatcagt tggttagccc aacttttagg tgcagatcat tctagtacgc ttttcggttt
      301 tattaccaat atgctcgtaa gcctacaaca gtcgtataat tgcgagattt tgcggttttt
      361 acatcattag tatagtgttt agcacgagtt gcttgccatt caacaaagcc ttttaagtgt
      421 tttggaacaa tgtaatattc cgttcccaac ataaattggt ttcttttaac tttgctatca
      481 tttgccaagc ctacagcatt aagtttgttt tctttataag catacattgt gtaagcattc
      541 cattgatcgg ttaaacgatg gagtaacaca gtgcgaactt ctttttcgat acgtttgtga
      601 ccgatagcat tttgatcttc cgtttcacgg cgttctaaat ctaagccaag ggtagttttt
      661 ccgtaggtat aagctgtacc gaaggcaaga gcagtgcgtt cataattgcc gatagattgc
      721 tcagaacgct cacgggttgc acctgttgct aattttaagc tttggttatc atcaatttta
      781 tagttataaa ttgctgctgc accccaaata tctttacgtt tattggctaa atctaagcca
      841 ttgtttccac gttggctatt tccgccatag aatgctccga gttttaatcc ttcgatgcct
      901 ttgtaaacat attaaagcgt acgtcgtgat gaaccggtaa gtaagccatc acttaagctg
      961 agtgtatttg gtaagtcagt ttgttttact tcatcggcaa tattagtcat attgccgtat
     1021 gttaattcac cgtattgttt atgcccgatt cctgcataga gttgatgatc ataaatatga
     1081 tcgaagttat gttgtgagct tgaatcgcca cgcatacgcc attccacacg acctaaagca
     1141 tagaatccgt gacccacttg ctgggttaaa cggaaaccaa aacgagagcc gttgttatcc
     1201 actgcgtgat taacgtggtt gcgggtagct ttaccattta ccggtgaggt tttatctgag
     1261 gtgctttccc acttaatacg agcagaacca ataaattcaa tttgtgtacc ggtttcttta
     1321 tgatcgtaaa tcgtaatagc tagagctgag tttgcgatta aggctgatgc taaaatcgct
     1381 catgttgttt tttcataaaa atcactccat atgaatagat aaagggaggt agtgtatgtg
     1441 aatattcatt gctagacaat aatgttttgt tagtttatat gatgattggt tataatagag
     1501 tcacttacag atcttcaata atatttaata tgaaacaaca attccccgtt attggcttag
     1561 ttgctggtga ggtctctggc gatattcttg gtgccgggtt aattaaggcg ttaaaagtac
     1621 attacccgaa tgctcgattt atcggtgtta caggctctcg aatgattgag gctggctgcc
     1681 agtctttgtt tgatatggaa gagctttctg taatggggct agcagaggtg gttaaacatt
     1741 tacctcgttt acttaagcgt cgtaaacagg ttattgatga gatgcttaaa ttgaaaccag
     1801 atgtatttat cggtattgat gcaccggatt ttaatttaac cgttgaagaa aaactcaaag
     1861 cgagtgggat taaaacaatc cattatgtta gcccttcggt gtgggcttgg cgacaaaagc
     1921 gggtgtttaa aattgccaga gcagctaatt tagtgttggc atttctgcca tttgagaaag
     1981 cgttctatga taaattcaat gtgccttgtc gttttatcgg gcatacgatg gcagatgcga
     2041 tcccactcga accaaatcgt acagaggcat gtttagcgtt aaatattgat gaatccaagc
     2101 gatatatggc aattttggtg ggaagccgtg gcagtgaaat tcagtttttg gctgagcctt
     2161 ttttgaaggc tgctcagttg ttaaaagccc gttttccgga tttacagttt ttagtgccaa
     2221 tggtcagcca aaagcgaatg gagcaattta atgcaattaa acagcaagta gctcccgagt
     2281 tggaactgaa tattattcaa ggcaaggctc gtcaggctat gattgcgtca gaatgtactc
     2341 ttttggcatc gggaacagca gcactagagg caatgttgtg caaatctccg atggtagttg
     2401 gttatagaat gaaaccgctg acttattggt tagcaaaaaa attagtgaaa accgattata
     2461 tctccttacc gaatttattg gctcaagccc cattggtacc agaattgatc caagaagcat
     2521 gcaacccgga aaatttagct caagagttat ctctattttt agctgatgat gagaaaaacc
     2581 aacaacataa agcattgcta aaacagcagt ttatgcagct acatcaatca attcaatgta
     2641 atgctgatga gcaagctgcc caagcggtta tcgatctcct aaacggctcg acaagcggtc
     2701 aaattt
//
LOCUS       DANLUT010000215         2635 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLUT010000215 DANLUT010000000
VERSION     DANLUT010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2635
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            17..775
                     /locus_tag="PXB38_002404"
     CDS             17..775
                     /locus_tag="PXB38_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5354654.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(915..2306)
                     /gene="ffh"
                     /locus_tag="PXB38_002405"
     CDS             complement(915..2306)
                     /gene="ffh"
                     /locus_tag="PXB38_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL5354655.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAETLKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT          796 a          550 c          511 g          778 t
ORIGIN      
        1 taaaataggt taaaaaatga tccccttaga gagacaacga gaaatactac gacttattaa
       61 taataatggt gtcgcaagta ttaattttct ggcagaacag ctaaaagtat cacatatgac
      121 aattcgccgt gatattcaaa agctggaaga gcaaggtaag gtatccctag tatctggtgg
      181 agttcaatct cttgaacgat taatcatgga attaccacac gatgataaat caatgttatt
      241 ccaagagcag aaatcagcta taggatcttt agcatcacag ctaattccct caaacacaac
      301 tatttatctt gatgctggaa ctactacatt agaaatagct catcggataa tcgatagaaa
      361 tgacttacta gttgtaacaa acgattttgt tattgctcac tatcttagta attcaggaaa
      421 atgtgattta attcatatag gaggaagtgt ctgtaaagaa aacctatcga caactggttc
      481 acttgcagca gaatttctga aaaacctatc aatcgatatg gcatttatat ctacttcatc
      541 ctggaattta aaaggtctaa caacgccgaa cgaaaataaa atccccgtta aaaaagcaat
      601 tttagaggca tcaaagcaaa acattttagt gacagactct tcaaaatatg gaaaagtcgc
      661 aacttttttt gtttgccctc ttactgtatt tgaccagatt atttgtgata aaggattatt
      721 tgagaatgta cgagacgcac tgaaagggct aagtattaaa ttagatttag gataatcttc
      781 ttaccaattt tttctgagaa cgacaagcaa tcaaaaagta ttatttttgc aaataagata
      841 ttaataggga aagttaacaa tcctagcaac ggattgttaa ctgattttcg gctggtacta
      901 ataaaatagg aatattaacg tttaccaaac atactgccta agccaccgag accgcctaga
      961 ccaccaccca tcataccttt aacaccacgc atcatttttg ccattccgcc tttacgcatt
     1021 tttttcatca tacgttgcat atcatcaaac tgcttgagca gcttatttac atcttgcacc
     1081 tgtgttccgg agccaagtgc gatacggcgg cggcgtgagc ctttaataat atccggattt
     1141 gcccgctctt ttaaggtcat agaattgatg atggcttcca ttttcatgaa cattttatca
     1201 tcaacctgac ttttaacgtg gtcaggcagg tttttcgccc ccggtagttt atcgagcatc
     1261 gacatcattc cacccatttt tttcatttcg ataagctgct cacggaaatc ttccaaggta
     1321 aattcatcgc cttttttgaa tttggcggca attttttccg ctttttcttg atcaaccgag
     1381 cgttgaatat cttcaattaa agacattaca tcgcccatac ctaaaatgcg ggaagccaca
     1441 cggtcagggt ggaacggctc aagggcatca gttttttcac ccacacctaa gaatttaatc
     1501 ggtttaccgg tgatttggcg aatagaaagt gccgcaccgc ctcgggcatc accatcgact
     1561 ttggtaagaa taacaccggt aagcggcaac gcttcgttaa aggcttttgc ggtgttggcg
     1621 gcgtcttgac cggtcatcgc atcaaccgta aatagcgttt caatcggatt cagcacagcg
     1681 tggatttgtt ggatctcttc catcatttcg ccatcaacgt gtaaacgacc ggcagtatcc
     1741 acaatcaata catcaaagaa attaagctta gcgtgcttca gtgccgcttc tgcaatcgct
     1801 accggttttt ggctggtttc ggtcgggaag aagtccactt ttaacgtttc agcaagggtc
     1861 tgtagctgct tgatagcggc agggcggtaa acatcggcag aaactaccaa cacctttttc
     1921 ttgtggcgtt ctttcaggaa ttttgccaat ttgccgacag aggtggtttt acccgcacct
     1981 tgcaaacctg ccattaaaat taccgcaggc ggttgggccg caagattcag ctcctcgttg
     2041 gcttctccca ttgccgtttc taattcgctt tgtacgattt ttaagaactc ttgccccggc
     2101 gtgaggcttt tgtttacctc aacccctaac gcacgctctt tgaccttgtt gatgaaatca
     2161 cgcacaacag ggagggcaac atccgcctcc aacaatgcca tacgaacttc acgcagggta
     2221 tctttaatat tatcttccgt taggcgacct ttgcccgtaa tgttacgcag cgttttagac
     2281 agtctgtcag agaggttttc aaacatatca gctttctcaa tttgcaaaat tttaggaaaa
     2341 aagtaccgct tgtgagcgga aagttgccgc cattatacaa aaaaaagcgt tacggttata
     2401 gggaaataaa aaaacggcat agcgattaaa ctatgccgta aaatttgacg atattcgagg
     2461 aatcattatt tagttatatt gtgcgatcat aatactccga attgcgtata aaagtgaagt
     2521 gatattttca aatttatgtt agaaatgaga ggtaaattac aaaattaaag gggatattat
     2581 tgtttgaaaa aataagagcg aaaagaaaac cctgatgatt gctcatcagg gcttc
//
LOCUS       DANLUT010000216         2611 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLUT010000216 DANLUT010000000
VERSION     DANLUT010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            161..451
                     /locus_tag="PXB38_002406"
     CDS             161..451
                     /locus_tag="PXB38_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL5354656.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            520..2160
                     /gene="groL"
                     /locus_tag="PXB38_002407"
     CDS             520..2160
                     /gene="groL"
                     /locus_tag="PXB38_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL5354657.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2285..2611)
                     /locus_tag="PXB38_002408"
     CDS             complement(2285..2611)
                     /locus_tag="PXB38_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL5354658.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT          827 a          423 c          622 g          739 t
ORIGIN      
        1 ttcttaggta tatagtttta tcaaaaatgg tcaaatttgt aaaaaatttt acaaatttga
       61 ccgcttgcac ttgaaactct aaaatctgcc tttatattgt taggcgttac gcattttgcg
      121 tgaagtttta tttattcatt tttaagaaaa ggaacatatt atggcacttc gtccattaca
      181 cgataaagtt attttaaaac gtgaagaagt tgaaacaaaa tcggcaggcg gtattgtttt
      241 aaccggttcg gcagcaacaa aatcaacccg tggcaaagta attgcagtag gaacaggtcg
      301 cattttagac aatggttctg ttcagccttt agcagttaaa gtgggcgatg tagtgatttt
      361 taacgaaggc tacggcgtaa aaaccgagaa aattgacggc gaagaagtgc taattttagc
      421 agagcacgat attttggcga ttgtagaata atttcgttct gcacaagcgg ttaaaaaagc
      481 aaaatttttt acatatttca aatacaaagg atttagaaaa tggcagcaaa agacgtgaaa
      541 tttggtaacg atgcacgcgt aaaaatgtta aaaggcgtga atattttagc cgatgcggta
      601 aaagtaactt taggtccgaa aggtcgtaat gtggtgttag atcgtgctta tggtgcacca
      661 acgattacaa aagacggtgt gtcggttgcc cgtgaaatcg aattagaaga taaatttgaa
      721 aatatggggg ctcaaatggt gaaagaggtt gcctctaaag ccaatgatgc cgccggtgac
      781 ggtacaacta ccgcaactgt attagctcaa gcgattgtaa acgagggctt aaaagcagtg
      841 gctgcgggta tgaacccaat ggatttaaaa cgtggtatcg ataaagcggt tgcagcagtg
      901 gttgaagagt taaaagcgat ttcaaaaccg tgcgaaacct caaaagaaat tgagcaagta
      961 gggacgattt ctgcaaactc agattcaaca gtcggtcaat taattgctca agcaatggaa
     1021 aaagtgggca aagagggcgt gattactgtt gaagacggta caggtttaga agatgcatta
     1081 gacgtggttg agggtatgca atttgaccgt ggttacttat cgccatactt tatcaataaa
     1141 ccggaagccg gtacggttga gttagaaaac ccatatattc ttttagtgga taaaaaagtg
     1201 tctaacattc gtgaattatt accggtgtta gaaggtgttg caaaagcagg taaaccgtta
     1261 ttaattattg ccgaagatat tgaaggcgag gcgttagcta ccttagtggt gaacactatg
     1321 cgtggtatcg tgaaagtggc ggcagtgaaa gcacctggct ttggtgatcg ccgtaaagca
     1381 atgttacaag atattgcgat cttaactgca ggtactgtga tttctgaaga gatcggtatg
     1441 gagcttgaaa aagcaaccct tgaagagctt ggtcaagcaa aacgtgtggt tatcagcaaa
     1501 gataacacca caattattga cggtattggt gatgaaactc aaatcaaagg tcgtgtagca
     1561 caaatccgcc aacaaatcga agattcaact tcagattacg acaaagaaaa actacaagag
     1621 cgtgtagcaa aattagccgg tggtgttgcg gtaattaaag taggtgcggc aactgaagtg
     1681 gctatgaaag agaaaaaaga ccgtgttgat gatgctcttc acgcaacccg tgctgcggtg
     1741 gaagaaggta ttgtaccggg gggcggagtt gctttagtgc gtgcagccaa caaagtggct
     1801 gatacactaa aaggcgataa cgaagagcaa aatgtaggta tcaaacttgc cttgcgtgca
     1861 atggaggctc cattacgcca aatcgttgcc aatgcaggtg aagaagcctc agttgtagcc
     1921 cgcaacgtga aagaaggttc aggcaactac ggctataacg caggtacaga gcagtacggc
     1981 gatatgcttg aaatgggaat tttagaccca actaaagtga ctcgttcagc acttcaattc
     2041 gcggcttcta ttgcaggttt aatgatcact acagaatgta tgattaccga tctgccaaaa
     2101 gaagagaaat tagatcctgc cgcaatgggc ggtatggggg gaatgggcgg aatgatgtaa
     2161 ttgcccattg agtgaacaaa agctactgaa attaattcag tagctttttt gttggtaaca
     2221 agtggttaaa tttatgctat tttttgcaaa taaaaaacca agcaagtaag cttggtttta
     2281 gcgtttattg atgtttttgt ttaaggctgt ttagtgctgt taaacctttc tcacaacttt
     2341 tttgctgtaa ttcagaatcc atttttagga tttgttgctt tgttaaagaa agtttatttt
     2401 tcatttttag cacttgagta tgagtaccag gctgtctttc tgcatcagag accaatttat
     2461 ttgccgtgtt aaacattttc tcacattcag ttggcaaatt tttacttaaa gtaggttttg
     2521 caactgtaag tgatgaggtt ttaacacttg ctatagcatt actggaaacc aatatggtac
     2581 aaagtgttat tcctaaaatt ctttttagca t
//
LOCUS       DANLUT010000217         2588 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLUT010000217 DANLUT010000000
VERSION     DANLUT010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            54..1418
                     /gene="glmU"
                     /locus_tag="PXB38_002409"
     CDS             54..1418
                     /gene="glmU"
                     /locus_tag="PXB38_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL5354659.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKAHLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVAIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
     gene            complement(1571..>2588)
                     /locus_tag="PXB38_002410"
     CDS             complement(1571..>2588)
                     /locus_tag="PXB38_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5354660.1"
                     /translation="SATTVYDAEGSKVDFDGSLRIVLDRTNSKELNNHNVVKTKKDAH
                     TGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGFGDLYTKRAYVGLGSKQY
                     GELTFGRQLTIADDLSQSVDYNYGINPKGDYIQTDGNQVIRYNYRGVENLHVSANYNF
                     AQDRKDGEVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYKTATDSTKHRKDGVLGSV
                     GYKFGDLKLSVDSGYRHEKVENEKGNAFYVSPNFEYQVVPASKVYGNYLYEREKVKKV
                     SKEKTHGFLLGVDYQFHKQVVAFVEGSYTRTSTKDYNKVTNGYKYTGKSTNKAIGVGM
                     RVYW"
BASE COUNT          835 a          513 c          487 g          753 t
ORIGIN      
        1 caatttacac gttactataa gccttcatct atttagtcaa ataaggattc tatatgactc
       61 aactgagcgt tgttatttta gctgccggta aaggcactcg tatgtattca gatttaccca
      121 aagtgttaca cccagttgcc ggtaaaccca tggtaaaaca cgttattgat actgccaaac
      181 agctagatgc ccagcaaatt catttaattt acggacacgg tgccgatctg ttaaaagcac
      241 atttaagcga agagcctgta aactgggtat tccaagccga acaattaggc acaggacatg
      301 caatgcaaca agcagctcct tttttcgctg atgatgaaaa cattgtaatg ctttatggtg
      361 atgcccccct aatcacaaaa gccactttag agcgtttaat cgcagccaaa ccggaaaatg
      421 gtattgcatt actaaccgtt gaattggaaa acccgacagg ctacggacga attattcgtg
      481 aaaatggttc tgtggtagcg attgttgagc aaaaagatgc caatgaagca cagcttaaag
      541 tcaaagaagt gaataccggc gtgatggtag caagcggtgc gagcttcaaa aaatggttga
      601 aaaacctaaa taacaacaat gctcaaggtg aatattacat cactgatgtg atcgcaatgg
      661 caaaccaaga aggctttaaa gtacaagcgg ttcaggcaac tgaatttatg gaagtagaag
      721 gggcaaacaa ccgtttgcaa cttgctgcac ttgaacggtt ctaccaaaaa cgtgaggcgg
      781 aaaaactgtt attggctggt gtagctatta tcgacccaag ccgttttgat cttcgtggca
      841 ctgtcaccca cggaaaagat gttcagatcg atgtgaatgt cattctagaa ggtgaaatca
      901 aactcggtaa caatgtaaaa attggtgcag gctgcgtact gaaaaactgc gaaattggcg
      961 ataatgttga aattaaacct tattctgtga ttgaagattc gattgtcggg gcaaaatccg
     1021 ctatcggtcc attctctcgc ttacgcccgg gggcagaatt agcggaagaa acccatatcg
     1081 gtaactttgt ggaaatcaaa aaagctacca tcggcaaagg ttcaaaagta aatcatctca
     1141 cttatgtagg cgatgcggaa atcggcaaag aatgtaacat cggagcaggt gtaatcactt
     1201 gtaactatga tggtgcgaat aaattcaaaa ccattattgg cgataacgta tttgtcggct
     1261 cagacagcca actcattgcc ccggtcacga ttgccagcgg ttcaaccatt ggtgccggtg
     1321 caacagtcac taaagacatt gcggaaaatg aactggttat tagccgtgtg ccacaacgcc
     1381 acattcaagg ctggcaacgc ccgactaaaa agaaatagtg ccagtggtca aaagttatta
     1441 tatttaaaaa ttggctttgc taatacttgc aaagccatac gcttaaaaaa acataatgaa
     1501 ccatatattt aaaacaaaac ccctaacaat aaatattgtt aggggtttat caatttagga
     1561 aatcaattga ttaccagtat acacgcatac caacaccgat agctttgtta gttgatttgc
     1621 ctgtgtattt ataaccatta gttactttat tgtaatcctt agtactagta cgagtataag
     1681 aaccctcaac aaaagcaact acttgtttat ggaattggta gtcaacacct aataagaagc
     1741 catgagtttt ttctttactt acctttttca ctttttcacg ctcatatagg tagttaccat
     1801 atactttaga tgctggtact acttggtatt caaagtttgg agatacatag aaagcatttc
     1861 ctttctcatt ttctactttt tcatgacgat agccagagtc aacacttaat tttaagtcac
     1921 caaatttata accaacagaa cctaatacac catctttacg gtgcttagtg ctatcagtag
     1981 ctgttttgta gtttgtatga ccataagctg cacgtaaatc ccagttatct acagtgtata
     2041 atgcaccaat gccgtatgca ttttgaagtt tatttgctaa tacttcacca tctttacgat
     2101 cttgtgcaaa gttatagttt gcacttacat gtaagttttc aacaccacgg tagttataac
     2161 gaataacttg gttaccatcg gtttgaatat aatcgccttt tggattaata ccgtagttgt
     2221 aatctactga ttgacttaaa tcatcagcaa tcgttaattg acgaccaaaa gttaattcac
     2281 catattgctt actacctaaa ccaacataag cacgtttagt atataaatca ccaaaaccat
     2341 catcactggt atttttgtta aaacggaact caacacgacc taatgcatag aaatcttgag
     2401 ctaaatcatg ttttactctt acaccaaaac gtgaaccagt gttacggatt cctgtgtgtg
     2461 catctttttt agttttaaca acattatgat tgtttagctc tttagaattt gttctatcaa
     2521 gaacaatacg taaagaacca tcaaaatcta cttttgaacc ttctgcatcg taaacggtgg
     2581 ttgctgat
//
LOCUS       DANLUT010000218         2567 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLUT010000218 DANLUT010000000
VERSION     DANLUT010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(116..191)
                     /locus_tag="PXB38_002411"
     tRNA            complement(116..191)
                     /locus_tag="PXB38_002411"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXB38_002412"
     tRNA            complement(195..269)
                     /locus_tag="PXB38_002412"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXB38_002413"
     tRNA            complement(313..397)
                     /locus_tag="PXB38_002413"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXB38_002414"
     tRNA            complement(432..507)
                     /locus_tag="PXB38_002414"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXB38_002415"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXB38_002415"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL5354661.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1843..2382
                     /locus_tag="PXB38_002416"
     CDS             1843..2382
                     /locus_tag="PXB38_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL5354662.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQSIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYEKLK"
BASE COUNT          817 a          529 c          468 g          753 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaatttag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcactc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagccc cgatttattc gcacctaacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccatcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgtcgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaatg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgctaacctt attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatttaac tttttcgacc gcttgtaata ccttaaaatc
     1741 cgttgaatac cactcaacgg attttttatt taaatcaatg cttattcaac tattttttgg
     1801 taagctaacg actttgaaag tgattgatat taggcatata caatgaacaa aaaatttcta
     1861 cttcctttaa ttctcttttt agcgttatct gtggcatttt tggttcaact cgctcgcaac
     1921 tcgcaaggcg acgatccgaa aaaattagaa tcagccttaa tcggcaaaac agttccgagc
     1981 tttaatttag aatcggtatt agatgaaaaa cagacaatcg accaaagtat cgtcaaaacc
     2041 ggtaaacctc gcctgcttaa cgtgtgggca acttggtgtc cgacttgtta tgccgaacac
     2101 gaatacttaa ccattttggc aaaacaaggg gtggaaattg tcggtattga ttataaagac
     2161 gaacgcccaa aagccatcaa attcttagcc aattacggca acccttataa agccattatt
     2221 tttgacccga aaggttcact tggtttagat ttaggtgttt atggtgcacc cgaaaccttt
     2281 attattgacg gtaacggcgt gattcaatac cgccacgccg gcgatgtaaa cgaccaagtc
     2341 tggaaccagg tgcttaaacc gatttatgag aaattaaaat aaaaatgaaa tactttttga
     2401 aacagaagaa agtaaaatcc tcttttacca gggaatataa tatattagca agcatttctt
     2461 tgattgtaac tctattaatt attttcagcc ttattttagg aggtatattc cttttcatat
     2521 atcttaaaaa attagacaaa tcattcttat ttatcaacct actgaat
//
LOCUS       DANLUT010000219         2527 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLUT010000219 DANLUT010000000
VERSION     DANLUT010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(103..387)
                     /gene="raiA"
                     /locus_tag="PXB38_002417"
     CDS             complement(103..387)
                     /gene="raiA"
                     /locus_tag="PXB38_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL5354663.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGRLIKLKEKNEH"
     gene            567..1508
                     /locus_tag="PXB38_002418"
     CDS             567..1508
                     /locus_tag="PXB38_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL5354664.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEVIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1604..2491
                     /gene="dapA"
                     /locus_tag="PXB38_002419"
     CDS             1604..2491
                     /gene="dapA"
                     /locus_tag="PXB38_002419"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL5354665.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          777 a          396 c          530 g          824 t
ORIGIN      
        1 tgcgaaaaat acggtaaatt ttaccgctta ctcttggaat aaaaaatagg gctaaatgat
       61 atctctcatt tagcccttat tattagatgt aaagtttaaa catcaatgtt catttttctc
      121 ttttagttta attaaccgac cttctaattt cttcttaaca tcaaaaattg cagtatataa
      181 atcttcatgt tcagctttag cgactaaatc acctaaaggg gtgccaattg ttgcttcaac
      241 ttggaatgag ttaggttgtt ttatcagcat aaaatgtggg tttatcaatt gggtgtggta
      301 tttttctaac ttagctaaac gctcctcaat atgagtacgg attgcagggg taatgtccat
      361 ttgtttgctt gaaatattta atgacataac attttcctct tgtttagtta aggcttttgc
      421 cgttgatatt ctaataacca aaatatgctc atcactccaa aaattcaagt gaaaaatgaa
      481 ataagtttcc aaaaatttga tctacttaac acttttagca gtttttagct ataatgtaat
      541 cataatctag tatgtgagaa taattaatga gtgagaaaaa acagttacct ccattccaga
      601 cacaattttt acaccctaaa tattggggat tgtggctcgg tttaggtgtt tttaagttaa
      661 ttttatgttt gccttatcct attttagtaa aaattggtct gggactaggt aaattgttta
      721 ctaaattggg ttttggtaaa cgtcgtatgc gtattgctcg ccgtaattta gagctctgtt
      781 ttccccatta ctctgctgag aaagtagagg aattagtcga agaaaatatg aaatcggttg
      841 gaatggcgat tattgaaacc ggtatggctt ggttttggtc ggataaacgt attcttaaat
      901 ggtctaaaat cgaagggcta gagcatttaa cacagcgtga tcaggaaagg ggtattttac
      961 ttgtaggggt gcattttctg actttagaac tcggtgcaag aattattggg ctacatcatc
     1021 aaggagtagg ggtttatcga ccgaatgata atccattatt agattggata cagtttcgag
     1081 gacgtgttcg ctcaaataaa gcgatgttag atcgtaaaga tgtgcgtgga atgattcgag
     1141 ctttaaaaaa tggcgaggtg atatggtacg cgcctgatca cgattatgga agacgaaata
     1201 gcgtttttgt accatttttt gcagtggagg aaacttgtac tactgcgggt agttatatgt
     1261 tacttcgttc tgccccaaag agtttagtga tcccgtttag cccgattcga aatttggact
     1321 attcaggcta cacagtaaaa gtcagtcctg ccgttgattt tagtcaatgt caaaatgaag
     1381 ttgaaacggc tattttaatg aatcgggtgg tagaacgtga aattatggct gcgctaactc
     1441 aatatatgtg gctacatcgc cgttttaaaa ctcgcccaaa tgaaggtgat caaagcctat
     1501 atgattaatt ttaaataatt tcaaaaaagt gcttgcatat ttaagctgaa ttttgcaatc
     1561 tagcaatgtt atcaagcata ataaaaaaat acaggagatg attatggcga cccctttatt
     1621 tcacggtagt atcgtagcat tagttacacc aatgactcat ggtgaggtag attatcagga
     1681 tttaaaaaaa ttagttgagt atcatattca agcaggttct cacgctattg tatctgttgg
     1741 tacaacaggt gaatctacca cattaagcat tgatgaaaat gttaaggtga ttaagaaaac
     1801 ggttgaattt gctgatggac gtattccaat tattgcagga actggttcta atgcgaccag
     1861 tgaagctatc actatgacta aattattagc aaacagtggt gtagctggtt gtttaagtgt
     1921 agtgccttat tacaacaagc caacgcaaga ggggatgtac ttacactaca aagcgattgc
     1981 agaaagtaca gatttaccac aaattctgta taatgtgccg gggcgaacag ggagtgattt
     2041 aaaacctgaa acaatcggtc gcttagcgaa aattgagaat attgttgctg tgaaagaagc
     2101 aacgggtgat ttaagccgct tacctttaat taagcaatta gccggtgaag attttatttt
     2161 cttaagtggt gatgatgcta ccggttttga gtctatgaaa ttaggtggtc aaggggtgat
     2221 ctcggtcacc aataatgttg ctgctgctga tatggcaaaa atgtgtgagt tagctcttgc
     2281 cggtcaattt actgaagcag aagaaattaa taaccgctta atggcgttac accatgactt
     2341 atttgtcgaa tctaacccga ttccggtgaa atgggctgct tataaattag gtttaattag
     2401 tgagcctaat ttacgtttac cgcttaccac actgtctgaa tcagcacagc ctgtagtgtt
     2461 aaaagcatta caacaagcgg gcttaattta gttatttttt gcaaatcaaa tttgaaaccg
     2521 gttaagt
//
LOCUS       DANLUT010000220         2503 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLUT010000220 DANLUT010000000
VERSION     DANLUT010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            46..2433
                     /locus_tag="PXB38_002420"
     CDS             46..2433
                     /locus_tag="PXB38_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL5354666.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
BASE COUNT          820 a          440 c          486 g          757 t
ORIGIN      
        1 aatagctgtt cagctaaaaa ttagtttttg cactttatcc ccctaatgga gaaaatgatg
       61 agaaaaatca atcagttaat catatcccca tactttttcc taagtatttt atctgcttcc
      121 gctaactctg atttttggaa aagcgacctt aattttaatc tcacaaatat taccaagcgt
      181 gtcggagtcg ataactttac cactccagta gctggcgagc cttgggctgg tattggtcca
      241 aatggtgaag ctgcaggtac tgcgccatta tattatagcc gtattccagc tatgcaagtt
      301 accgaagata acaaattagt tgttatgttt gatttacgct ggaatcgtgc gtatgaccaa
      361 gatcgtattg atcctggtat tgcgatttct tccgatggtg gccatacttg gacgaagaaa
      421 accgcttggt cttttgatag aactaatcac ccagcacgcc gttcaatgga tccaacgcta
      481 ttacataatc ctattgataa tagtttatat gtaatgcacg gaacttggtc tatgtcggat
      541 caacaatggt atggtgggcg tgttcctcac tttaatagtg gcagctgggc agctaccatt
      601 tataaatcta ctgatggtgg tttaaattgg gagaaaaata ctgagtttag taaattcagc
      661 aatttagacg tattttctaa agtcaccaaa aatggaaaac ctaccttagg ctttttaggc
      721 ggggtcggat ctggaattgt aatgcaagat ggtacgttgg ttttcccaat tcaaaccgca
      781 catcaaaatg gtattgcgac cactattatg tattctaagg ataatgggaa aacttgggaa
      841 atgccagaaa ttgacaaccc agttgcaccg aaccaaagtt ctttagaaaa tatggtgttt
      901 gaactcgaac cgggtaagct agtgatgact ggacgaggaa acagtcgctg ggcatactct
      961 tctactgata tgggtaagac ctgggaatta tttactccaa ctaatggatt attaccaact
     1021 agctcacaac caactcaagg ctcttctatc tatgtaacac taccaaatgg tcgaaaagtg
     1081 ctactaatct ctaaaccaga tggaaagaat gatgggtgga aaaggggtga tattacactt
     1141 tggatgctag atgcaaaaga tccatcgcac aaacacaagg tgcatattat tcgtccaggt
     1201 tcaggtaatg ccgctggtgc tggttattcc tctttagcct ataaagaagg gaatttattt
     1261 gttgcttttg aaaacgatgg tgatatttca gtaaaaaatt taactgaaca tattgctgaa
     1321 atggaagcaa aagctatcga atggggatta ccagatgaac ttactcctgc tttggataaa
     1381 atcaatgcac tgccttatct caataaagct caaaaagaga cgctagtcga aaaaatgcgt
     1441 cgtgctaatg atactgcgat tgcacaatct tttgtgatta acaaagaaat gtataatctg
     1501 aaaaacaata gtgatgagct ggataaattg gcaaaaaata ttactaaagc actgccgtct
     1561 caacagaata tttatcaaag agccttagcc tatgtgaata aagtcaccaa tacagcggat
     1621 accacttatt taaattataa tggtattatg gatacctatg ctaatttata tgaaagctat
     1681 ttggctttaa atactaaatt agacttcact cgctacatcc aaaaagcgag aaagttcaat
     1741 gaatataaca ctgatatttt atatcgtagc tttgataatt tctttgccca ttacgacaca
     1801 ggtgtaaaac acaataatct atccttaggc ttgaatacaa aattaagtga gaatttacgt
     1861 ggtggcttat tctttgaata cagtaataaa aatcgtaata gcgtacaaat tggtgcaaga
     1921 gctaaatatg aaatggataa tcaccaactt tctggcttct tacgctatcg tggcgtaaaa
     1981 cataaagata tgctagcacg taataacagt gttgatggct acctaaatta tgcttatcgt
     2041 attcaattag atgataaatt aagcattagc ccatcagttg gtgcttacgt ttcacgttct
     2101 tctcgctcat taatagatga agatcttgcg attaatagcc gcacggtcta tgcaagtgat
     2161 gtaggattga atatccatta taagctaaat gatattgatg cttatattcg tccaagtata
     2221 ggctttgtca atggtgatat aactttatct caatctaatg atatgacaaa cacatacaaa
     2281 ataaaggata aaagtaacgt gtattctgtc acgacagggt tgaaaaaacg ctttgcaaat
     2341 ggtgtggcat taggggctga tttcaaatta catcgttatg gttctcaaac tactgaaagt
     2401 aatttcggtc taaatgtaag ttataactgg taataccgta aactgattac gatttaaaag
     2461 ttagactagc ccaagactga gttctatatt ccatagagct cag
//
LOCUS       DANLUT010000221         2500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLUT010000221 DANLUT010000000
VERSION     DANLUT010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            98..676
                     /locus_tag="PXB38_002421"
     CDS             98..676
                     /locus_tag="PXB38_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354667.1"
                     /translation="MAVGDLINNKTKKPRYLVEIADVLGVDVKWLQTGEGSPNTSLAL
                     DEEDQKSIVIDVLDVEASAGNGSTGDLVEVVSKLYYVPDQFNLYFRGMNPESIRVINI
                     RGDSMSPTFASGDMIFVDINITTFDGDGVYVFTYKNHLYVKRLQMAGDALIVISDNST
                     YKEWRITEENFEQLCIHGKVKVHQSQQLNFIG"
     gene            809..1705
                     /locus_tag="PXB38_002422"
     CDS             809..1705
                     /locus_tag="PXB38_002422"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354668.1"
                     /translation="MSNIQLQGQLFTQKEESVFSIMGILEDGTPYLTMNALSRLCGLD
                     PSTMWAFTANWDCSDNKPRTNFICDTLKSQGYSIESLYSKIARTGQIVHAYPDYVCMA
                     ILEYYAFEAKRFDNTTARNNYRKLASYTLRRMIYESLGISSTNPIVAQSWQVYQERIL
                     LNDQIPITHFSIFREMADILVRLINSQFKLDPYSVPDISVGQHWGKYWVNNNLEQKYG
                     ERIKYQHYYPDSFPQSAANPVSAWIYPLQALGEFRLWLMTTYLNEKLEPYLSKKVSDG
                     AIPLIEKQQILNAINQKAPQLN"
     gene            1820..2089
                     /locus_tag="PXB38_002423"
     CDS             1820..2089
                     /locus_tag="PXB38_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5354669.1"
                     /translation="MKITYDPNKNQRNIEERDLPFDLVNQFDWNTAQIWQDLRFDYGE
                     IRLNALGFINERLYSLTFKPLNDGIRVISFRKANKREIQHYESHQ"
     gene            2073..2396
                     /locus_tag="PXB38_002424"
     CDS             2073..2396
                     /locus_tag="PXB38_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5354670.1"
                     /translation="MKAINKAEYYDEIAENTPLTDEELAQFRPLREAMPPEFVKMVLG
                     HQEEMENKGLMPRKLTRGKQKAPTKQAITIRLSAEVVEAFKATGKGWQSRINEALLKH
                     IHTSM"
BASE COUNT          861 a          452 c          447 g          740 t
ORIGIN      
        1 atttaatatg actacattag gcgaacgcat tgaaaaagag atggatagaa aagggttaaa
       61 gcgaaaagat atcgctgaag cacttaatat ttcaacaatg gctgtaggtg atttaattaa
      121 caataaaact aaaaaaccac gttatcttgt tgaaattgct gatgtattag gtgttgatgt
      181 caaatggttg caaaccggag aaggaagccc taatacatct ttagctttag atgaagaaga
      241 tcaaaaaagt attgtgatag atgtgcttga tgtagaagca agtgcaggca atggctcaac
      301 aggggatttg gtcgaagtag tcagtaaact ctattatgta ccggatcaat ttaacctcta
      361 ctttagggga atgaacccgg aaagcattcg ggttatcaat attcgtggcg attcaatgtc
      421 tccaaccttt gcctcaggcg atatgatttt tgtggatatt aacattacta cttttgatgg
      481 tgatggtgtt tatgtcttta cctataaaaa tcatctgtat gttaaacgct tacaaatggc
      541 tggcgatgcc cttatcgtta tttcagataa ttcaacctat aaagaatggc gaattactga
      601 ggagaatttt gaacagctat gcattcacgg caaagttaaa gtccaccaaa gccaacagtt
      661 gaattttatt gggtaagtgg ttaggcgtag aagttattat tgctcagtct tagaattgca
      721 aaaataacat tacgatcaat gatacatatc ttttaaaatc aatatgttat ctaacatata
      781 taatatatac gatcatagag gaaattttat gtcaaacata cagctacaag ggcaattatt
      841 tactcagaaa gaagaatctg tattttccat tatgggcatt cttgaagatg gaacaccata
      901 tcttacaatg aatgctctat ctagattatg tggattagat ccttcaacta tgtgggcatt
      961 tactgcaaat tgggactgct cagacaataa gcctagaact aactttattt gtgatacatt
     1021 aaaatctcaa gggtatagta ttgaatcact ctattcaaaa atagctagaa cagggcaaat
     1081 tgttcatgca taccccgatt atgtatgtat ggcaatatta gaatattatg cttttgaagc
     1141 taaaaggttt gataacacga cagcaagaaa taattatcgt aagttagcaa gttatacgct
     1201 gcggagaatg atatatgaat cacttggcat atctagtaca aatcctattg tagctcaatc
     1261 ttggcaggtg tatcaagaaa gaatattact taacgatcaa attcctataa cacacttttc
     1321 gatctttcga gaaatggcag atatattagt aagactaatt aatagccagt ttaagcttga
     1381 tccttattct gttccagata ttagtgttgg acaacactgg ggaaaatact gggtaaacaa
     1441 taatcttgaa caaaaatatg gagaacgtat taaataccaa cattattatc ctgatagttt
     1501 tccccaaagt gcagccaatc ctgtttcagc ttggatatac ccacttcaag cactaggtga
     1561 gtttagatta tggctaatga caacctactt aaatgaaaaa ttagaacctt atttatccaa
     1621 aaaggtgagt gacggagcga taccattaat tgaaaaacag caaatattaa atgcgataaa
     1681 ccaaaaagca ccacaattga attagcaaaa accgccctcg tggtggtttt tatttacttt
     1741 acttaattgt aattacaatt tacttgactt tacgcaattt gttattacaa taaacttaaa
     1801 tcatcaactc agttaagcaa tgaaaattac ttacgaccca aacaaaaatc agcggaatat
     1861 tgaagaacgt gatttaccgt tcgatcttgt taatcaattt gattggaata ccgctcaaat
     1921 ttggcaagat ttacgttttg attatggtga aattcgttta aatgctttag ggttcattaa
     1981 tgaacgctta tattctttaa cgtttaaacc gcttaatgac ggtattcggg taatcagttt
     2041 ccgcaaagca aacaaaagag agattcaaca ttatgaaagc catcaataaa gcagaatact
     2101 acgatgaaat cgcagaaaac acccctctaa ccgatgaaga actcgcccaa ttccgccctt
     2161 tgcgtgaagc aatgccccct gagttcgtta aaatggtact cggtcatcaa gaagaaatgg
     2221 aaaacaaagg cttaatgccc cgtaaactca ctcgtggcaa acaaaaagcc ccgaccaaac
     2281 aagccattac cattcggcta tccgccgaag tggtggaagc ctttaaagcc accggcaaag
     2341 gctggcaaag ccgaataaat gaagccctct taaaacacat tcacacctca atgtagctac
     2401 agcccctttt cggggcttat tttttcctta acctttccca acaagcggtc attttcccct
     2461 agaaatttgc aattttttca gctcaccacc ttcttctcac
//
LOCUS       DANLUT010000222         2448 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLUT010000222 DANLUT010000000
VERSION     DANLUT010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            101..313
                     /locus_tag="PXB38_002425"
     CDS             101..313
                     /locus_tag="PXB38_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354671.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFLLVEEKIIDVLENNGFETVAT
                     ILAGSDGWCNAINAYLAEQNKHRNEF"
     gene            326..1249
                     /locus_tag="PXB38_002426"
     CDS             326..1249
                     /locus_tag="PXB38_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HDL5354672.1"
                     /translation="MTNQNQQVAQKQDKFPIKTLFESPNVKQKLQELLNKNAATFTTS
                     VLQIVNSNSMLRNAEPMSVFNAACMAATLNLALQNGLGFAYIVPYQNRKEKKTEAQFQ
                     LGYKGLIQLAQRSGQFKRLVAVPVYEKQLLAEDPINGYEFDWKQKPAKDEKPIGYYAY
                     FKLINEFTAEIYMTTQEVHDHANRYSQTYRKGYGVWHDNFEAMALKTVMKLLLSKQAP
                     LSVEMQQAVLADQAVVKDVENAEFAYPDNEIQEAEFTELKVSDEVFEKCKQTIINKES
                     TLQDMCDNGYEFNKEQYAELEKLENEQQSNV"
     gene            1242..1904
                     /locus_tag="PXB38_002427"
     CDS             1242..1904
                     /locus_tag="PXB38_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation protein TolB precursor"
                     /protein_id="HDL5354673.1"
                     /translation="MYKFKPRCSMLHQLMSEPRTKADREAGLISDTAKAAVREVAKFD
                     LFGYQSFDGNKYTEKGNQLEEQAIKLSGFTRGLVLKKNTERRENDWISGECDIYVPSR
                     KLIIDTKCSWDIGTHPFFADEAIAKAEKAGYDIQMQGYMWLWDCEEAQIDFVLFPTPI
                     DLIGTYESTEKLIDLVEQIPQQKRITTVTVKRDEAIIAKIKDRVKAASKYYDKLIQEA
                     MN"
     gene            1945..>2448
                     /locus_tag="PXB38_002428"
     CDS             1945..>2448
                     /locus_tag="PXB38_002428"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354674.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAITTFGTVFAGTLGGYIE
                     KESNLKHLGNAWVYDNAKVYDSAEVYGNAKVYDSAEVYGNAEVYGNAEVWGSAKVWGN
                     AEVWGSAEVYGNAKVYDSAKVYDSAEVYGNAEVWGSAEVYGNAKVWGNAEVWGSAEVY
                     GNAEVWGS"
BASE COUNT          829 a          550 c          565 g          504 t
ORIGIN      
        1 ttttatggtt gccatcaccc tcctaatgca atgaagagct tatccctgaa agcacctgca
       61 agcctgaaac ttgcgaattt aaagtaacgg agaaagtgtg atgataggat acgaagacta
      121 cacagatgct tcacttcaac cagaagaaga ccctagcgaa gaggctttcc tcttagtgga
      181 ggagaaaatt atagatgtgc tagaaaacaa cggctttgaa accgttgcta ctatcctagc
      241 cggttctgat ggctggtgta acgcaattaa tgcctacctg gccgaacaga acaaacacag
      301 aaatgaattt tagaggaata agataatgac aaaccaaaat caacaagtag cacaaaagca
      361 agataaattc ccgattaaaa ccctatttga aagcccgaat gtaaagcaaa aactacaaga
      421 gcttttaaac aaaaacgcag ccacgtttac aacaagcgtg ttgcagattg tgaatagtaa
      481 ctcaatgtta cgcaatgccg aaccgatgag cgtattcaac gccgcttgta tggcagcaac
      541 gcttaatttg gcattacaaa acggcttagg ttttgcctac attgtgccgt accaaaaccg
      601 caaagagaaa aaaaccgaag ctcaattcca acttggctac aaaggtttaa ttcaactggc
      661 tcaacgtagc gggcaattta aacgccttgt tgccgtgccg gtgtatgaaa aacaactgct
      721 tgccgaagac cccatcaacg gttacgagtt cgattggaaa caaaaaccgg ctaaagatga
      781 aaaaccgatt ggctattacg cttatttcaa actgataaat gaatttaccg ccgaaatcta
      841 tatgaccacg caagaagtcc acgaccacgc caaccgctac agccaaacct accgcaaagg
      901 ctacggcgta tggcacgaca actttgaggc aatggctctc aaaactgtga tgaagctctt
      961 gctttccaaa caagctccat tatcagtgga aatgcaacaa gcggtcttgg cagatcaagc
     1021 ggtcgtaaaa gatgttgaaa atgcagaatt tgcctaccct gacaacgaaa tccaagaggc
     1081 ggaatttacc gaactcaagg tcagcgatga ggtgtttgag aaatgcaaac aaaccatcat
     1141 caacaaagaa agcaccttgc aagatatgtg cgataacggc tacgagttca acaaagagca
     1201 atatgcggag ttggagaagt tagaaaatga acagcaatca aatgtataaa ttcaaacccc
     1261 gttgctcaat gctccaccaa ctaatgagcg aacctcgcac caaagccgac cgtgaagccg
     1321 gactgatttc cgacaccgca aaagcagcgg tgcgtgaagt ggctaaattt gacctattcg
     1381 gttatcaatc ctttgacggc aacaaataca ctgaaaaagg caatcagcta gaagaacaag
     1441 ccattaagtt aagcggtttt actcgtggcc tggttctaaa aaagaacacc gaacgccgag
     1501 aaaacgattg gatttcaggc gagtgtgata tttatgtacc aagccgaaag ctgattatcg
     1561 atacaaaatg cagttgggac atcggcacgc acccgttttt tgcagacgaa gccatcgcca
     1621 aagccgaaaa agccggatat gacattcaaa tgcaaggcta tatgtggctg tgggattgcg
     1681 aagaggctca aatcgatttt gtgttattcc ctactccaat cgaccttatc ggtacttacg
     1741 aaagcacaga aaagctgatt gaccttgtgg aacaaatccc ccaacaaaaa cgcattacca
     1801 ccgtgacggt taagcgtgat gaagccatca ttgccaaaat caaagacaga gtgaaagcag
     1861 ccagtaagta ttacgacaag cttatacaag aagctatgaa ttaattcaat cgccccgaaa
     1921 ggggcttttt aataggtgac aaatatgaca acccaaaaga aatacgaact cctccaaaac
     1981 gacacaatca accacaacgg cagaacactc taccgcatca aagccataac cacatttgga
     2041 acagtctttg caggtacact tggcggctat attgaaaaag agagcaacct aaaacattta
     2101 ggaaatgctt gggtgtatga caacgccaaa gtgtatgaca gcgccgaagt gtatggcaac
     2161 gccaaagtgt atgacagcgc cgaagtgtat ggcaacgccg aagtgtatgg caacgccgaa
     2221 gtgtggggca gcgccaaagt gtggggcaac gccgaagtgt ggggcagcgc cgaagtgtat
     2281 ggcaacgcca aagtgtatga cagcgccaaa gtgtatgaca gcgccgaagt gtatggcaac
     2341 gccgaagtgt ggggcagcgc cgaagtgtat ggcaacgcca aagtgtgggg caacgccgaa
     2401 gtgtggggca gcgccgaagt gtatggcaac gccgaagtgt ggggcagc
//
LOCUS       DANLUT010000223         2417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLUT010000223 DANLUT010000000
VERSION     DANLUT010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            56..862
                     /locus_tag="PXB38_002429"
     CDS             56..862
                     /locus_tag="PXB38_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005726415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5354675.1"
                     /translation="MALAVAACGNLSKVSDEGTTENPVFPKISESEFNHDGSQFGSWP
                     NWENVRQIEKGMNKDQLYNLIGRLHFEEGLYGVREWDYAFNYRENGVHKICQFKILFD
                     KNMNAQSFFWYPNGCNGNSSFTLTGDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQ
                     VKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVGYGKANQVKACDGET
                     GQELKDCLRPNRRVEISANGGVMKQNEGGNVAGPNGPAPLYQTPAYDGSK"
     gene            950..1768
                     /locus_tag="PXB38_002430"
     CDS             950..1768
                     /locus_tag="PXB38_002430"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL5354676.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            1825..>2417
                     /locus_tag="PXB38_002431"
     CDS             1825..>2417
                     /locus_tag="PXB38_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili methyl-accepting chemotaxis
                     transducer N-terminal domain-containing protein"
                     /protein_id="HDL5354677.1"
                     /translation="MIGFASIISGISLGIMWSNKSDASLINVSGSLRMQSYRLLSEMD
                     SKKALLPERLLEYHRTLHATELSSLKQSVLLSDSVIESYQQLLKDWYEMQSYVAQRDK
                     VNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAMLLIIALAYIGVWYTRKKI
                     IGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSST"
BASE COUNT          810 a          369 c          501 g          737 t
ORIGIN      
        1 aacttaatat gaaaatggaa aaaaagccct tttccgtgga tttttattat cgacagtggc
       61 attagcagtg gctgcttgtg gtaacttaag taaagtgagt gatgaaggaa caactgaaaa
      121 cccggtattc ccgaaaatct cagaatctga atttaaccac gatggttcac aatttggttc
      181 atggccaaac tgggaaaacg ttcgtcaaat tgaaaaaggg atgaacaaag atcaattata
      241 taatctaatt ggtcgtcttc attttgaaga aggcttatat ggtgttcgtg aatgggacta
      301 tgcattcaat taccgtgaaa atggcgtaca taaaatttgc caatttaaaa ttttattcga
      361 taaaaatatg aatgcacaaa gtttcttctg gtatccaaat ggatgtaatg gaaactcatc
      421 atttacttta actggcgatt tcttattcga tttcgataaa gcgactttaa ctacaaaagg
      481 taaagaagtt gttgataatg ttgctcaaca attaaaagca tctaaagcac aacaagttaa
      541 agtagcaggc tatacagacc gtttaggctc tgctgcttat aacttagact tatcacagcg
      601 tcgttctaat acagttaaag ctcgtttagt acaacaaggc gttacagcac aaattgaagc
      661 ggtaggttat ggtaaagcga atcaagtaaa agcttgtgat ggtgaaactg gtcaagaatt
      721 aaaagattgt ttacgcccta accgtcgtgt tgaaatttct gcaaatggtg gtgtaatgaa
      781 acaaaatgaa ggtggcaatg ttgcaggtcc taatggtccg gctccacttt atcaaacacc
      841 agcatatgat ggcagtaaat aatttctagt tttgactaac ttagagtaga atattaaggc
      901 aaccaaatgg ttgccttttc ttttatctat ttatttatag gggaatacta tgaactacca
      961 agctattgca tttgatttag acggaacact actttcatcg aacgcaacaa ttttagaatc
     1021 cagtaaagag gctattaaaa aggtaagaga aaagggaatt aaagtctact ttgttaccgg
     1081 taggcaccat actgcggttc gcccttatta tgtagaacta gggctggata cgccagttgt
     1141 gtgttgcaat ggcacttatg tgtatgattt taaaaatgaa aaagtattaa gcggtaatcc
     1201 gttatcagca gaaattgctt caaaattagt taatgatgca caagctcaag ggattcatac
     1261 tgcggtttat tttgaagatg caatgactta tgagtctttg aatattcact tcactaaatt
     1321 ccaaaaatgg gttgagtctt gcgcaccaga agttcgtccg aatgtttatc aggtagaaaa
     1381 tttccaacaa gaaattgata aaggtgtaac cgtatggaaa gtgcttatta gcgatccaga
     1441 tcttgccaaa atgcaaaaat ttgttgaaaa attaccgcct gatcaagtaa gcccggaatg
     1501 gtcttgggtt gatagggttg atattaccag tgttggtaac agcaaagggg caagattagc
     1561 ggaagtatta aaaacagaag gtattgattt acaaaaggtg attgcctttg gcgataattt
     1621 caatgatgtt tctatgctag aaaccgttgg attaggcatt gcaatgggaa attcagaacc
     1681 agatattcag caaaaagcga agaaaactat aggttcaaat aatgaagata gtattgctaa
     1741 tgaattgaaa gctcaattta atctttaatt atgataaaag caaaatactc tattgctagg
     1801 cggataggac tctatttttt aattatgatc ggatttgctt cgattatcag tggaatctca
     1861 cttggtatta tgtggagcaa taaatctgat gcgagcctga ttaatgtttc aggctcactt
     1921 cgtatgcaaa gttatcgatt gttatcagaa atggattcaa aaaaagcgct gctacctgag
     1981 cgattgttgg aatatcatcg aacgctacat gctacagagc ttagttcatt aaagcaaagt
     2041 gttttattgt cagatagcgt gatagaaagc tatcaacaat tacttaaaga ttggtatgaa
     2101 atgcaatctt atgtcgctca gagagataaa gttaattatg cttcgcacat tgaagattat
     2161 gtgcagagag ttgatgattt tgttttccgc ttacaagagt tcgctgagtt aaaattaaag
     2221 attgcaacag gcgtgattgc gattgcaatg ttactgatta ttgcccttgc ttatattggc
     2281 gtttggtata ctcgaaaaaa gattattgga cctttaaggc aattggtaaa agcgagttgg
     2341 caaattcaaa ataaagattt tgaccacgta aaattagcgg ttaatgaacc caatgaatta
     2401 gggctacttt cctctac
//
LOCUS       DANLUT010000224         2403 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLUT010000224 DANLUT010000000
VERSION     DANLUT010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..833
                     /locus_tag="PXB38_002432"
     CDS             <1..833
                     /locus_tag="PXB38_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5354678.1"
                     /translation="ADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAAR
                     IAAAMTMYIKKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNL
                     ETFRNGQLRATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRP
                     IYREWLKMAIASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLAT
                     EGQAIRASGNNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE
                     "
     gene            845..>2403
                     /locus_tag="PXB38_002433"
     CDS             845..>2403
                     /locus_tag="PXB38_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDL5354679.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVEN"
BASE COUNT          723 a          559 c          586 g          535 t
ORIGIN      
        1 cggcagacaa tatgttgcac ctcgcctttc gcaagcggtt acatcaaatt cgtggtgtaa
       61 gtatgttgca cggtgtgatt gtgcgattgg cggatctgaa agaatacgaa gagagcgaac
      121 gagttgccgc tcgcattgcc gccgcaatga cgatgtacat taaaaaaggc gatgcggcac
      181 tgtatgatga cgacagtaac agcgatggcg aacgcctgtt tgatattgcc cccggtgcgg
      241 tgattgatga tttaaaaccg ggtgaagaca tcggcttaat caattccaac cgcccgaatg
      301 tgaatttgga aactttccgc aatggacaac tgcgagccac tgccgccggt actcgttcga
      361 gctattccag catcgcccga gactacaacg gcacttactc tgcacagcga caagagctgg
      421 ttgaaagttt tgaaggttat gcggtgctac aagatgcgtt tgtggcggca atcagccgcc
      481 cgatttatcg ggaatggctc aaaatggcaa tcgcctcaca agcgatcaaa ctgccgcctg
      541 atattgacca aaactctctc tttaatgcgg tttattcagg tcctgtaatg ccgtggattg
      601 acccaatcaa agaggcgaat gcgtggaaag aacgaattaa aggcggttta gccaccgaag
      661 ggcaagcaat ccgagccagt ggcaataacc cagccgaagt caaacggcaa cgaattgtcg
      721 agatcaaaga aaatcaagcc gaagggctaa aatttgatac cgatctcacc aattacggtg
      781 ggcaggataa atctttctcc aatcaaaaag atgaaattaa cgaagatgaa taacaggagg
      841 gtgcgtgaaa acgtggttca acattcaagc caaagcgaat gacaccgccg aaatctcaat
      901 ttttgacgaa atcggctttt ggggtgtcac cgcccaacaa tttgctaaag acttaaaagc
      961 ccttggcaac aatttaaaac aaatcaatct gcatatccac tcgcccggtg gtgatgtgtt
     1021 tgacggcatt gccatttaca acctgctaaa aaatcaccct gctaacaaga ccgtctatat
     1081 tgacggtctt gccgcatcaa tggctagcgt aattgcaatg gcaggtgatg aaatcattat
     1141 gcctgaaaac gctatgatga tgatccacaa accgtggggc attcaaggcg gtgatgcgga
     1201 tgatatgcgt aaatatgcgg atttactgga taaggttgaa agtacactga ttatggcgta
     1261 tgtcgccaaa acaggtaaat acgaaaccga tttggcagaa atgctgaaag aagaaacttg
     1321 gctcacaggc aaagagtgcg tggagcaagg tttcgccgat aagttagccg aaccccttgt
     1381 ggcgatggct tgtatccaat ccaaaaaatt agaggactac acaaaaatgc ctgacaaaat
     1441 caaaaatatg ctattcgcac cacaaggcaa cgcaggtgca aatccaaaac atgaacaacc
     1501 tcaaacacca ccacaagcgg gtgaaaatcc gcaaaatgtg gcaaaacctg atgcaatggt
     1561 ggcattagcc caacgcaatg caacgattaa agcgaccttt gccgctttcg gcacacaatt
     1621 tgacggcttg ctggcagaat gtttagctga tgtgtcaatg accgctgagc aagccaaaga
     1681 caagctcctt gccaaactgg gcgaaaacac caccccaagc gtaccgcaaa accacattca
     1741 cgcaggtaac ggtaacatcg ttggcgacag cgtgaagcag tcgttaatgg ctcgtgctgg
     1801 tcaagatacc gacaaaacca acgcaagaga taatgcctac aatgcaatga ccttgcgtga
     1861 gttggctcgt gcctcattgg ttgatcgtgg cgtgggtatt gcgggctaca ccccaatgca
     1921 gatggtcggt cttgccttta ctcattcgag ctccgacttc ggtcaaatct tgattgatgt
     1981 ggctcataaa tccctactca aaggctggga aaccgctacc gaaaactacg agcagtttac
     2041 cacccgtggc actcttactg acttccgacc ggcaaaacga gtcggtttag gtgagtttgg
     2101 ctacctgccg gaagtgggcg aaggtgaaga atacacctac ggcacaatcg gtgatgaagg
     2161 tgcatctgtt gcattggcga cttacggaca actgtttagc attacccgtc aggcgattat
     2221 caatgacgat atgcatcttt taactaaaat ccctgagaaa atgggtgcag cagccaaagc
     2281 gactattacc aaactggtgt ttgccttgat taccggcaat gcgacagccc aagacggtaa
     2341 aaagctgttt gatgctacac ataaaaacag cttaacgggt gcggcattga atgtggaaaa
     2401 cat
//
LOCUS       DANLUT010000225         2340 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLUT010000225 DANLUT010000000
VERSION     DANLUT010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..250
                     /locus_tag="PXB38_002434"
     CDS             <1..250
                     /locus_tag="PXB38_002434"
                     /inference="COORDINATES: protein motif:HMM:NF024418.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL5354680.1"
                     /translation="IFKVIFNRTTQKMEVVSELAKSQGKAASSTDDRSSISPLVGGLK
                     GSFLVGGTALLMISAMPAEAVVSQVIMLDILQAILLTK"
     gene            466..2208
                     /locus_tag="PXB38_002435"
     CDS             466..2208
                     /locus_tag="PXB38_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HDL5354681.1"
                     /translation="MSIAIGGLSKATDIGAVALGTSSYASGFNSFAAMRQSAARADYA
                     AAIGSSSWANATASFAIGASATALGERSFAIGSGVPQTLDQNTGEARRSIYDGNNNTL
                     AAGKDSFSIGTKAKTNGDSAFAIGTNAHSGSFKVEASNIGELGDITVADKDKVANNAF
                     ALGTNTRALSNDTVAFSTNATAQGDGSIAFGVNTNTTGTGAIAFGNASKAWKDNAISI
                     GWNATSHAEKVITIGTNSTVTKEGGMAIGDTAKSTGNNSIAVGYTSNVSNSNATAIGT
                     RANVTHEGGTAIGFEAESIANYATAIAYNSTASGESSIAAGVNSTVSGIRAAAVGYNN
                     TVSGNDTFVLGSNVTVNTVGSVILGSDSAQAKATYENTATVGKLTYSGFAGNDNVAEG
                     DYVSVGNATNARQIKFVAPGNISSTSTDAINGSQLYATNKMLDNVTNSVVNNFGGNSQ
                     VDANGNITFTNIGETGKDTIHDAIKAAKTQVKQGSNVNVSKATVDGTDVYTVNAYNTT
                     VSAVTTNGKNYLNVADNFNTGTNTTNYAVSLTDDAIRDFTKDNDTVTGVVDDGKDYKL
                     KKFHLQKMKIALTK"
BASE COUNT          747 a          367 c          510 g          716 t
ORIGIN      
        1 aatatttaag gttattttta accgaacgac gcaaaaaatg gaagttgtgt ctgaacttgc
       61 taaatcgcaa ggaaaagcgg catcctccac tgatgatcgt agtagtatta gccctttagt
      121 gggtgggcta aaaggttctt ttttagtagg tggaaccgcg ttattaatga tttcggcaat
      181 gccggcggag gcagttgttt ctcaggtaat aatgctggat atactacagg cgattctatt
      241 aacaaaatag gggatacata cgcttataac tattataatc caggtagtct ttcttataac
      301 gatcctttaa atattgacag aagtaccact gggaatcttt ataatggaac gctacatata
      361 gaaggtattg gcataggtcg taatacagtt attcagagta gtcaagttac ttctggttac
      421 aataatggta ttgctatcgg tgactattct aaatcgacag gtggtttgtc tattgcaatt
      481 ggtggtttat ctaaagcgac agatatcgga gcagtagctt taggtacatc ttcttatgct
      541 tctgggttca actcattcgc agcaatgcgc caatctgctg caagagctga ttatgcggca
      601 gcaataggtt cttcttcttg ggcaaatgca actgcaagtt ttgcaattgg tgcatcggca
      661 actgcattgg gtgagcgttc ttttgcgatt ggttcaggtg tacctcagac tcttgatcaa
      721 aatactggag aagcaagacg aagtatttat gatggtaata ataatacttt agctgctggt
      781 aaggattcat tttctattgg tactaaagca aaaactaatg gtgatagtgc ttttgcaatt
      841 ggtaccaatg cacattctgg tagctttaaa gttgaggcta gtaatattgg tgaattaggt
      901 gacattactg ttgcagataa agataaggtt gcaaataacg cttttgcttt aggtacaaat
      961 actcgtgcat tatcaaacga tactgtagct ttctcaacta atgcaactgc acagggagat
     1021 ggttctattg cttttggtgt aaatactaat acaactggta cgggtgcaat tgcatttggt
     1081 aatgcatcta aggcttggaa agataatgct attagtattg gttggaatgc aacttctcat
     1141 gcagaaaaag taattactat tggtaccaat tctactgtaa ctaaagaagg tgggatggca
     1201 attggtgata cagcaaaatc gactggtaat aattctattg cggtaggtta tacttcaaat
     1261 gttagcaact cgaatgcaac agcaattggt actcgagcga atgtaaccca cgaaggtggt
     1321 actgcgattg gttttgaagc tgagtcaata gctaactatg caacggcgat tgcttataac
     1381 tcaacagcaa gtggtgaaag ctctattgcg gcaggtgtaa acagcactgt ttccggtatt
     1441 cgtgcagcag cggtaggtta taacaatact gtatcgggta atgacacctt tgtattaggt
     1501 tctaatgtta cggttaatac tgttggttct gtaattttag gctcagattc cgcacaagca
     1561 aaagcgactt atgaaaatac agcaactgta ggtaaattga cttatagtgg tttcgctggt
     1621 aacgataatg ttgctgaggg tgattacgta agtgtaggta atgcaacaaa tgctcgccag
     1681 attaaatttg tagcaccagg taatatctca agcacttcaa cagatgcaat taacggctct
     1741 caattatatg caacgaataa aatgttagac aatgtgacta attcagttgt aaataatttt
     1801 ggcggtaatt cacaagttga tgcaaatggt aatatcacat ttacaaatat tggtgaaaca
     1861 ggtaaagata ctattcatga tgcaatcaaa gcagctaaaa cccaagttaa acagggttct
     1921 aatgtaaatg tttctaaagc aacagttgat ggtacagatg tatatactgt caatgcatat
     1981 aacactactg taagtgctgt tacaacgaat ggtaaaaact acttaaatgt agctgataat
     2041 tttaatactg gaacaaatac tacaaattat gcggtgagtt taacagacga tgcgattcgt
     2101 gatttcacta aagataatga tactgttact ggtgtagttg atgatggtaa agattataag
     2161 ttgaaaaaat tccatctcca gaagatgaaa atcgcactta caaagtaagc ttaagtgata
     2221 aggcaattaa tgagttcaca aaagatactt ctgcaactgt gaaagctggt tctaatagaa
     2281 ttaatgtaaa cggggcagct aatacaacta atccagatat tatggattat acggttgatt
//
LOCUS       DANLUT010000226         2318 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLUT010000226 DANLUT010000000
VERSION     DANLUT010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            76..438
                     /locus_tag="PXB38_002436"
     CDS             76..438
                     /locus_tag="PXB38_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL5354682.1"
                     /translation="MKPTNKADFQHVINAAGYSMKGLKAAYINEAAFRQEIWCATILF
                     PLGLILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAA
                     VFMAMVLLAITWILILFC"
     gene            475..2118
                     /locus_tag="PXB38_002437"
     CDS             475..2118
                     /locus_tag="PXB38_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL5354683.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKTTLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
BASE COUNT          771 a          425 c          452 g          670 t
ORIGIN      
        1 ttccttaggt tctttgaaca tcaccattct ttcagtacaa tagttctcta aactctttta
       61 tttattttat ttactatgaa accaaccaat aaagcagatt ttcaacatgt gatcaatgca
      121 gctggctact ctatgaaggg gttaaaagcc gcttatatta atgaagccgc ctttcgccaa
      181 gaaatttggt gcgctactat tttattccct ctagggctta ttctaggcga aaccaatatt
      241 gaaaaagcat tattagtagg cacagtttta cttgttttag ttacagaact actcaatagt
      301 gcggttgaat ctgttgttga ccgcattggg gctgatttcc acgagctttc tggtagagct
      361 aaagatattg gctctgcagc tgtatttatg gcgatggttt tactcgctat aacttggata
      421 ttaattttgt tttgttaact ctatttttca accaacactc ttactgaggt atttatgcgc
      481 ttaaaaaaaa cattactttc ggtagcacta cttagtgcaa catcagcaat ggcctacgag
      541 acaggtaaaa catatcgttt tacggtttta catactaacg atatacacgg tcacttttgg
      601 caaagtgata aaggcgaata cggtctcgct gctcaaaaaa cattggttga taatattcgc
      661 aaagaggtcg cagaaaaagg tggttcggta ttaatgctga atgcaggtga tgcgaataca
      721 ggcgtgccgg agtcagatat gcaaaatgca cgtcctgata ttgaaggaat gaatgcgatt
      781 ggttacgatg caatggttct aggtaatcac gaatttgatt acccactgca aattctctct
      841 atgcaagaaa aatgggctaa attccccttt atttcggcca atgtcattaa taaaaaaacg
      901 gataaaccca ttgtaaaacc ttacgtgatg ttagaacgag gcggactaaa aattgctgtt
      961 atcggattaa caaccgaaga taccgcaaaa ttaggtaatc cagatgtaac ggaaaatgcc
     1021 tttttcaaaa accctattga aacagcaaaa aacacattag ctgaaattaa tcaaaaagaa
     1081 aaacccgacg tacgtatcgc tttaacccat atgggttact attttgacgg taaacatggt
     1141 actaatgcac caggtgatgt aacaatggcc cgtaccttag aaaaaggagc gttcgattta
     1201 atcattggcg gtcataccca cgatactgtt tgtattgatg aaaaaggtca attcaaagcc
     1261 aaatatacgc cgggtgagga atgtaaacca gacttccaaa acggtacttg gattgtgcaa
     1321 gccggcgaat ggggcaaatt tgttggacgg gctgattttg agtttaaaga tggaaaaact
     1381 accttggtaa aatatgaatt aattccggtc aacttaaaaa aaaccattaa aaaagaagac
     1441 ggtactaaag aataccgact ttaccagcct gaaatcaaag ccgatgaagc aacctatacc
     1501 ttattgaaaa aatatcaaga tgagggcgat aaaaagctta atattgaagt tggtcgtgtg
     1561 aaagggttat tagacggcaa acgtgagcat attcgcttcc aacaaaccaa tctcggtcgt
     1621 ttaattgcac aatcgcaaat ggaaagggta aaagccgata tcgggattat gaactccggc
     1681 ggtattcgta cctcccttga agaaggtgta ataacttata aacatattct gactgttcaa
     1741 cctttcggta atatgattgc aacggtggat ttaaaaggac aagaattgtt agataccctc
     1801 accactattg ctctgaaaga agttgatact ggcgcttatc ctcaatttgc cggcatttca
     1861 atggtagtcg accgtacagc aaaaactatt tctgatgtta aaatcggtgg caaacctttt
     1921 gataaagaga aaacttataa agtttctctg cctgactatg ttgcggctgg tggcgatggc
     1981 tacccattac tgaaaaaaca ccctagctat gtcaatacag gctttattga tgccgaaatg
     2041 ttgaaaaaat tcttcgaaga aaataaaatt attgaggcag ataaatacga tccaaaaaac
     2101 cagatcattt tcaaatagag ctatagaaaa tgaaactcac tctggcagtc tctgctcaaa
     2161 agagctgtgg ctgcctgtag attgttttct tactttcaag tgttatagga aatcgataaa
     2221 aatccctacc aaattaattc atcaccatat gatgaaaatt aaaaaacctc tggcaatact
     2281 ttgccaaaag tttttgactt ttatagggta atatcact
//
LOCUS       DANLUT010000227         2262 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLUT010000227 DANLUT010000000
VERSION     DANLUT010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..228)
                     /locus_tag="PXB38_002438"
     CDS             complement(<1..228)
                     /locus_tag="PXB38_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354684.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINNV
                     WVQISRIRKRFKCPEQAKSFAEQWKQTETPAF"
     gene            complement(232..738)
                     /locus_tag="PXB38_002439"
     CDS             complement(232..738)
                     /locus_tag="PXB38_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354685.1"
                     /translation="MEAKYNMIIELAQQQGLTHIQLTQKHCLHLAASVGKLCSGVVNN
                     AKQKIKTATGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELYGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            complement(1050..1125)
                     /locus_tag="PXB38_002440"
     tRNA            complement(1050..1125)
                     /locus_tag="PXB38_002440"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1090..1092),aa:Arg,seq:tct)
     gene            1406..1678
                     /locus_tag="PXB38_002441"
     CDS             1406..1678
                     /locus_tag="PXB38_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas2"
                     /protein_id="HDL5354686.1"
                     /translation="MRNYLISYDLYKAGQNYDGLISYIKSHQVWAAIHKSVWYIKSNK
                     SAEQIRNELLIYLDKNDSVFVTDMNSAAWNNLTEGNGEYIRQNWMR"
     gene            complement(1656..1925)
                     /locus_tag="PXB38_002442"
     CDS             complement(1656..1925)
                     /locus_tag="PXB38_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354687.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENSLSDEDRYDIKQA
                     VLKAVGNGCSDPEMLASRCCSAIEIINRNGLNTGNGSISTSSNSV"
BASE COUNT          604 a          454 c          427 g          777 t
ORIGIN      
        1 aaatgcaggt gtttcagttt gtttccattg ttcagcaaag gattttgctt gttcagggca
       61 tttgaaacgc ttgcgtattc ttgagatttg cacccacaca ttattgattt tttgttttat
      121 gcggatatcc gctctccagc agtcgtggcg tttatgtttg atgttgtgtc gaaacccttt
      181 cgtggagctg tcgtgccata cactggtata aatactaaac gtcgtcattt tttactcctt
      241 gtgaatacta aattcattca aacaatgctt atttttcaag aattcatcta agcactcatc
      301 aagagttagc tcgtattctt taagaatgcc atatagttca atcagaatcc cagagcattt
      361 gttaaataaa ttaatcctga ttgtattttg gttttgttct ttttcattgc tgtccactaa
      421 ccaaggagca aaccaagcaa attgcgaggt atgatgtaac atacgtatcg ctctttgctc
      481 gggtggggtt gttccactag ctttccacgt gtgaagctct aagtcttcat cgaactggat
      541 ttgatggtta atgatggtga gtaatgtaaa aatttctccc gtagccgttt taatcttctg
      601 tttcgcatta ttaacgactc cagaacatag tttccccact gatgcagcaa gatgaagaca
      661 gtgtttttga gtaagttgaa tatgggttaa gccttgttgt tgtgccagct caataatcat
      721 gttgtattta gcttccattt ttcgttcctt ttttagtcaa aaatctgaat tttgggtgta
      781 aaaagcccct ccgcagtaat tacttaacct tgagcaactc tacaggcgtt atattaagga
      841 gatgtttctg atggcggatt taattcttga ggagcaatcc aatcatcgct aacttcccag
      901 atttcttctt gccctgcttg ttcagggctt tttaacttaa taagcatttg atacctcaca
      961 ttgttttatt agccattcaa aaccgctcta cacggtaggt ttccacttcg taggctcgtc
     1021 atcgatgatg tgcgcaaagc ggttttggat ggcgaccgca gagagattcg aactctcgac
     1081 ccactgctta gaaggcagct gctctatcca ctgaactatg cggtcaaagt accgttgctt
     1141 aaccccaacg gcagggttta cttcaatcta aggaggatgg ctttcaccat ctcaaaccgc
     1201 tctctagtcc attcgtttcg ctggataacg gcactttggg aaaacatacg caaaaaacca
     1261 agtgaggtta tcgggctaac tctttgttga gagcggtttg agatggtggc tcttttatac
     1321 ttgtgagccg tcaagtttcc ttattgtctc tcacaacact aaggaatata attaaatctc
     1381 tcacagcaca aataaggatt cttctatgag aaactattta atttcttacg atttatacaa
     1441 agctgggcaa aattacgatg gattgattag ttatattaaa agccatcaag tttgggctgc
     1501 tattcataaa tcagtttggt atatcaaatc taataaatct gcagaacaaa ttcgtaatga
     1561 actgctcatt tatttagata agaacgatag tgtctttgtt acggatatga atagtgctgc
     1621 ttggaataat ctgactgaag gaaatggtga atacattaga cagaattgga tgaggtagat
     1681 atactcccat taccagtgtt tagcccattt ctattaatta tttcgattgc ggaacaacat
     1741 cgtgatgcaa gcatttctgg atctgaacaa ccattcccta cagccttaag taccgcctgt
     1801 ttgatgtcgt atctatcttc atcagatagg ctattctcta ctacttttaa ttccaaatct
     1861 ttagggcttc ctagttgttc atttaaaata acaactttcg caatttcaaa atttttgttt
     1921 ttcataattt acctctagtt aaatattcca aaacacactt tctcaaatat gctttggaat
     1981 ttgaaatgcc gtctctccga gctgtcacgc aattttagag ctgcgtttgc acaatttgaa
     2041 tttcggttac tcccttgtgt ctcaatgtac acgcccagac tttcacctaa accgctataa
     2101 gggtatatgc ttgtattcct ttgcttgcac caaagggcat aacgctttga agtagtgggc
     2161 gttttaaggg ctgcctccga ctttcgtctt cctacttttc accattaggc ttaaagcggt
     2221 tttgaatttg atttttaaag aacattgagc cgtagctcgt tt
//
LOCUS       DANLUT010000228         2239 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLUT010000228 DANLUT010000000
VERSION     DANLUT010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(60..689)
                     /locus_tag="PXB38_002443"
     CDS             complement(60..689)
                     /locus_tag="PXB38_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL5354688.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            793..1440
                     /gene="udk"
                     /locus_tag="PXB38_002444"
     CDS             793..1440
                     /gene="udk"
                     /locus_tag="PXB38_002444"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL5354689.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            1455..2036
                     /gene="dcd"
                     /locus_tag="PXB38_002445"
     CDS             1455..2036
                     /gene="dcd"
                     /locus_tag="PXB38_002445"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL5354690.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            2114..>2239
                     /locus_tag="PXB38_002446"
     CDS             2114..>2239
                     /locus_tag="PXB38_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL5354691.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILT"
BASE COUNT          765 a          426 c          383 g          665 t
ORIGIN      
        1 cattgctact aatatagcaa aaaagcccgt cattcatcaa tgaaaaaatt taaactccac
       61 tagaaaattt gcagagcaag ttgataagta taaatcagta aactaaaagc gataaagtac
      121 ataattagcc cggtaacagc atctaaaatt tgccaagttc ttcgctttgc aaaataaggg
      181 gaaagtaagc ttgctccata acctatgcca aaaaaccaaa taaatgagca aagtaatgca
      241 cctgctaaaa agtatatttt accgttaaaa tctaatttcc caccgatact gcctacaatc
      301 acaaccgtat caatataaac gtgaggattt aagaatgtaa tcgcaaaggt aatcagtaaa
      361 gcctttttta agctcgttgc attctctcca cttgccacaa ggtattcacc acttttaaat
      421 acgctgataa atgaacggct accgtagctt aatagaaaaa tggcccctaa aagcgaaata
      481 atgaaactta caacaggcaa ttccgcaatt aacgtgccta agcctagcac acctatcgtc
      541 attaaaaata catcacctaa aaaacagagc aatgcaatcc aaaatatgtg ttgttttaaa
      601 atcccttgct ttaataaaaa ggcattttgt gcgccaatag agacaattaa gccaaaacac
      661 actataaatc cttgaatgaa aatatccatt ttttctccaa aatcgcataa caagcggtca
      721 attatacaga aaattttgca aaacttcggt ataatttatc gaatactctt ttgactgaat
      781 aggaaatttt ttatgactga tactagccag acttcatctt gcgttgtcat tgcgattgcc
      841 ggcgcatctg cctcaggtaa gagcctgatt gcctcaacca tctataaaga actcaaaaat
      901 gaattgggaa cagataatat cggtattatt tccgaagatg cttattatag agatcaatct
      961 catctaacaa tggaagaacg gattaaaacc aattacgatc accctaattc aatggatcat
     1021 catttattgg ttgaacattt acgccaatta aaacaaggta atgcgattga aattccagaa
     1081 tatgactata ccgaacataa tcgtaaaacg accacgaagc actttgaacc aaagaaaatc
     1141 attattttag aaggtatttt attgctgaca gatgagaata ttcgcaatga aattaatgtt
     1201 tctattttcg tagatgctcc tctggacatc tgctttatcc gccgattaca acgtgatatg
     1261 gtggaacgtg gacgttcgat ggaatcagtg attagtcaat atcgcaaaac cgttcgccca
     1321 atgttcttac aatttatcga accctctaaa caatatgctg atattattgt gccaaaaggt
     1381 ggcaaaaacc gtattgccat tgatattctt aaagcacaaa ttaagcaatt actaaaataa
     1441 aataggagct aaatatgcgt ttatgtgata cagatattaa acgttactta gatgaaggta
     1501 ttattgccat aacgcctcga ccttcagacg ataaaatttc tggcgccact gcagatgtgc
     1561 gtttaggtaa ttcgtttcgt gtatttcgtg aacataaaac gccctatatt gatttaagtg
     1621 gccctcgaga agaagttgcc gcccagttaa ataaagtgat gagtgatgaa attatcatcg
     1681 gtgatgatga agcatttttc cttcatcccg gtgaccttgc actcgcaaca acccttgaat
     1741 cagtttcctt accagccaat attgttggat ggttagatgg tcgttcgtca cttgctagat
     1801 taggcttaat ggtacacgtt accgcccaca gaatcgatcc gggttgggaa ggcaaaattg
     1861 tattggaatt ttttaatgct ggaaaattac ccctagcttt acgccctaat atggcaattg
     1921 gcgcattaag ctttgagatt ttaagtggtg atgctgcaaa accctataat gcgcgaaaag
     1981 atgcaaaata taagaaccag caaagtgcca tttcaagtcg gattaatcaa gattaatata
     2041 gtacatgcct tgcaatcata cattaactat gttagttttt taatcagttt attacacagt
     2101 aaggagtata actatgttac attatgcagt cgtatttttt gtcatcgcta taatcgcagc
     2161 gctattagga tttggtggta ttgctggaag tgctactgaa attgccaaaa ttctcttttt
     2221 tgtcttttta atacttact
//
LOCUS       DANLUT010000229         2239 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLUT010000229 DANLUT010000000
VERSION     DANLUT010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            90..1685
                     /locus_tag="PXB38_002447"
     CDS             90..1685
                     /locus_tag="PXB38_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL5354692.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1772..2071)
                     /locus_tag="PXB38_002448"
     CDS             complement(1772..2071)
                     /locus_tag="PXB38_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354693.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(2058..>2239)
                     /locus_tag="PXB38_002449"
     CDS             complement(2058..>2239)
                     /locus_tag="PXB38_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL5354694.1"
                     /translation="VKVFFSIAIIMFIAVTICGMMILSALKKQRHFMQSTLTELKLDI
                     AAFKSALTLKQNGEH"
BASE COUNT          723 a          421 c          448 g          647 t
ORIGIN      
        1 ttaaacaaat gtctttgaag tcattttatt ttcgtttatg ctaattaagt aatgattaaa
       61 tgttttaatt cgagcaaaag gagcaaaaaa tgcaaagaca tgaacagcta gctcaagtac
      121 aacaaacgca aaaatgggat tttattatta tcggtggtgg cgcaagtggt ttggggattg
      181 cggtagatgc agcttcccgt ggctataaaa ccttattatt agaaagccat gactttgcga
      241 aaggtacatc gagccgaagc acaaaattag tccacggtgg cgttcgctat cttgcaaatg
      301 gcgatgttgc actcgtgaga gaagcattgc gtgaacgagg tcgcttagct aaaaatgcag
      361 ctcatttatt taaaaaccaa agctttatta ttccaaacta caaattcaaa gactgtgtaa
      421 tgtatcgtgt tggtttaggc ttatacgata tgctttcagg caacctgagt ttaggaaaga
      481 ctgaaaacat cagtaaaact gaagcgaaaa gacgtttacc aaccttaaat gatactggtt
      541 tacgtacagg cactgtttat caagatgggc aatttgatga ctcacgtctt gcagtgaata
      601 tggcacaaac ggtagtagag cacggcggta cagtactaaa tcacgccaaa gtgacttcac
      661 tgcacaaaac gccacaaggc aaaattgatg gggtgacttt ctacgatgaa ctcaatcaac
      721 aagaacatac tgttttcggc actgcggtga ttaacgcaac cggcgtattt atgaatgata
      781 ttttaagtat ggatcacggt agcacgaaaa aatttgtcgt accaagccaa gggattcact
      841 tagtattaga taaatcattc ttaccaagta atgatgcgtt aatgattcca aaaacctctg
      901 acggacgagt gttatttgct gtaccttggc acgaagtgtt agtcgtaggg acaacagata
      961 ctctgattga aaatccttct tatgagccaa ttccattgga acaagaggtg aactttattt
     1021 tagagacagc cgcacaatat ctgacaaaaa aaccaactcg tgatgatgta aaagcagtct
     1081 ttgccggtca acgtccgctt gcggcaccgg aaaaagaagg tcaaagcact aaagaagtat
     1141 ctcgtagtca caaagttctc actgatgcaa ccagcggttt gattacgatt acaggtggta
     1201 aatggacaac ttatcgtcaa atggcagaag ataccgtaga agaagcgtta aaagtccact
     1261 ctgaactagg caataaacct tgtgtgaccg tcaacttacc gattcacggt aatattccgg
     1321 cagcacaagt gaatctacaa gatcatctat atgtatatgg ctcagatatt ccacagttac
     1381 gcgccttaat gactgagacc ccggaatatg cacaaaaaat ccatccgaga ctagattata
     1441 ccgttgcaga agtgatctgg gcagttcgcc acgaaatggc acaaacggtt gaggatgtat
     1501 tagctcgccg tgttcgtttg ctcttcactg atgcgagagc ggcgattgat agtgcagcaa
     1561 aagtggctgc tattatggcg aaagaattag gtaaagatga aatgtggcaa caacagcaag
     1621 ttatccagtt ccttgatgtt gcgaagcact atttattggt agattatcag ccacagccaa
     1681 tctaatacgc taaaagcaag cggttaaaat cgataaaaat attgcaatta cgttatttgc
     1741 aactttttaa accattttaa ccgcttgtat attagctatc atctctttta tgtttctgtt
     1801 gtaataaaaa gaatgctgtt aaccccaata cagaaaagct aattcctttc atactcaata
     1861 atctttttac caaaaaatct aatgcaatgg ttttaactgc cggtgaattg accagtgcaa
     1921 gccctgtttg tttcacttgt ttaaaaggct gcataatctc atttttggtt ttattggttt
     1981 ccgctttaaa tcgcattcta agtgcattac cttttagaac tagaagttcc ttttcggtta
     2041 atttaagctc ttccatttta atgttctcca ttctgtttca aagttaaagc actcttaaat
     2101 gcggcaatat ctaattttag ctcggttaat gtactttgca taaaatggcg ttgttttttc
     2161 aaggcagaaa gtatcatcat tccgcaaata gtcacagcaa taaacataat aatggcaata
     2221 gaaaagaata ctttaactt
//
LOCUS       DANLUT010000230         2221 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLUT010000230 DANLUT010000000
VERSION     DANLUT010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..706
                     /gene="fdhD"
                     /locus_tag="PXB38_002450"
     CDS             <1..706
                     /gene="fdhD"
                     /locus_tag="PXB38_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL5354695.1"
                     /translation="VYNGISHTVMMATPANLEDFALGFSLAEGILNAPSELYGLDVIE
                     QENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQLEQVNQSCKIVKKNNRLQN
                     VNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLAIREDVGRHVALDKLIGWY
                     AKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTEMAVNMARENQFTLLAFAR
                     KGKATIYAGEERLALN"
     gene            709..1636
                     /locus_tag="PXB38_002451"
                     /pseudo
     CDS             709..1636
                     /locus_tag="PXB38_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
     gene            complement(1728..>2221)
                     /locus_tag="PXB38_002452"
     CDS             complement(1728..>2221)
                     /locus_tag="PXB38_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5354696.1"
                     /translation="NFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRVIDGFMI
                     QGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINVADNTFL
                     DYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVEDVVIESV
                     SVA"
BASE COUNT          606 a          457 c          478 g          680 t
ORIGIN      
        1 ggtatataac ggtatttctc atactgtaat gatggcaaca ccggctaatt tggaggactt
       61 cgctttagga ttctcattgg cggaagggat tttaaatgcc ccatcggaat tatatggttt
      121 agatgtaatt gaacaagaaa atggagtaga aattcagctt gaaatatcga gccgccaatt
      181 tgttgcatta aaagataaac gccgctcaat ggcaggcaga acaggttgcg gtatttgcgg
      241 tgtagagcaa ttagagcagg ttaatcaaag ttgcaaaatt gttaagaaaa ataaccgctt
      301 gcagaacgtc aatccactga ttttagagga ttgtttatta cagctagaaa atgctcaatt
      361 cttatcgaaa gaaaccggtg caagccacgc cgctgcattt tttaccccgg atggaaaact
      421 gcttgccatt cgtgaagatg tgggcagaca cgtggcgttg gataaattaa tcggttggta
      481 tgctaaagct gattttccga ttggatttgt gtttgtaacc agtcgtgcca gctttgaaat
      541 ggtgcagaaa tgcttagccg tcggcattga aatgttgtgt gccatctcag cgaccactga
      601 aatggcagtg aatatggctc gtgaaaatca atttacctta cttgcttttg cccgcaaagg
      661 caaagcgacc atttatgcag gagaagagag actcgctctt aattgataat ggaaatagcc
      721 cttttattag ccgataaaat tctacaatta accctgatgg tgctgctcgg ctacctcatc
      781 gttaaaacca aattactcaa atcggagcac agttatccga tttcggttat cggactacat
      841 tatcagcccg gcaatgctga ttactgcttt tcaagtagat tacaccaccg aaatactaaa
      901 cggcttgtat ctggcatttt taatctccgt cttattaaac ggcttgttaa ttctgcttgg
      961 ttggctgctc aaaagagcgt tgaaattaga caacatagaa caagccaccg ctatttattc
     1021 caactccggc aacttaatta ttccgattgt tgcctccctg ttcggcaatg aatgggtgat
     1081 ttattcaacg gcttttattg tggtgcaaaa tgtgttgttt tggtctcact tacggctgct
     1141 gatttgtggc aaaggcaatg tgccgtttag aaagatgatc tttaatatca acattattgc
     1201 gattgtgatt ggtatgatgt tgtttttgct acatatcaaa ctgcccgcta cgcttgcaaa
     1261 cacgctctca actttagggc atatgttagg gcctttagca atgcttgtgg cagggatgtt
     1321 aattgcagca attccattta aagagattat taccgataaa cgcatttact tggtggcttt
     1381 tctccgcttg atttttattc cgctgatttt gttagcggtg attaaactcg gcggttttgc
     1441 gagctgggta gagaatggaa aaacggtggt aatgattaca ttcttagcca ccatcagccc
     1501 ttctgctgca acggcgaccc aaatggcggt ggcttacggg caagatgcca aaaaagccag
     1561 tgcgatttat ggcgtaacca ctttactttg tgtgtttaca atgccgctga ttatttggct
     1621 gtatcaattt ctataaaaac aagcggtcga tttctgctac ttttttgcaa cgctgagaaa
     1681 tgcaaaaaat tgtgaaaaat caaccgcttg taggctaatt tgcggaatta ggcaacgctt
     1741 acagactcaa tcaccacatc ttcaaccggc acgtcttggt ggaagccttt attgccggtt
     1801 tttacgcctt tgattttatc gaccacgtcc ataccttcaa ccacttcgcc aaatactgca
     1861 tagccccaat cttgcactac acttctgccg aacatctctt ttgagcgata atctaagaaa
     1921 gtattatccg ccacattaat gaaaaactgt gacgaagcag aatgcggatc agaagtgcga
     1981 gccattgcga ttgtgccacg cttgttgctt aaaccgttgt tcgcttcgtt ttgaatcgga
     2041 tcttttgtcg gtttttcagc catacctgcc gtcattccgc caccttgaat cataaagccg
     2101 tcaatcacac ggtggaaaat cgtgccgtta taaaaccctt ctttagcgta atcttcaaag
     2161 tttttagcgg taatcggggc tttttcaaag tttaattcga ttttaatgtc accgaaattg
     2221 g
//
LOCUS       DANLUT010000231         2127 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLUT010000231 DANLUT010000000
VERSION     DANLUT010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(65..286)
                     /locus_tag="PXB38_002453"
     CDS             complement(65..286)
                     /locus_tag="PXB38_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354697.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            complement(373..1170)
                     /locus_tag="PXB38_002454"
     CDS             complement(373..1170)
                     /locus_tag="PXB38_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5354698.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNVLLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            complement(1172..2104)
                     /locus_tag="PXB38_002455"
     CDS             complement(1172..2104)
                     /locus_tag="PXB38_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5354699.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMTLLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLVVPRIKHKLLGKRG"
BASE COUNT          655 a          516 c          371 g          585 t
ORIGIN      
        1 agccaagcaa acgcaaagac gtttaaaatt agcaaaccta tggttaaatt ccagcctagt
       61 tccatcacaa cacctccttt agctgccgta attttcgccc aagcgtcaaa aaaacataaa
      121 tactcaatac caataatgct aagttagtca atttaatcaa cgttggttct ttgccaaaaa
      181 gtataacagg aattgccaaa atcgcaactt tcgctacatc aaccgaaatt ttagcccaat
      241 cgtctagcgt ttctttctct accggtgttt tgaaaatgct taacattgaa tacctccttt
      301 tgggcttatt atttaaaatt tgacagccaa aaacaaaagg agaaattcat tttttcgatg
      361 cagatcgcaa aattaattgc cgagtaataa tccatcgtca ctcaactgct cgtggcgact
      421 ttgttggaaa agttgtaaca gatccggcac gtccattttt tgccgttgct cgcccgaaac
      481 atcaaacgcc acttgccctt ggtgtaacat cacggttcta tcgccatagt caagggcttg
      541 ccgcattgaa tgcgttacca ttagcgtggt taatttctgt tctcttacaa ttttattggt
      601 aagttcaagc acaaaatcgg tggttttcgg atctagtgcc gcggtgtgtt catctaacaa
      661 taagacatta gacggctgaa gtgatgccat cagcaagctc accgcttggc gttgcccgcc
      721 tgataaacgc cccatttgat cagtaagccg attttccaaa cctagcccta acaaagcaag
      781 tttgtctttg aataactctc gcatttggcg tttgatcgca aagcccaacc cacgtttacg
      841 tccacgttgg taagccagtg ccatattttc ttcaatcgtt aaactttcac aagtgccagc
      901 catcgggtct tggaaaactc gggcgacttg atttgcccgt tgccaagtgg tggattggtt
      961 taccttattt ccttgaatta aaatctcacc ggagtccacc gcacaatcac cactgatcgc
     1021 atttaataag gtagatttac ccgccccatt gctaccaatt accgacacaa attcgccttg
     1081 ctcaactttt agggataagc ctctcagcac agggttctca attgctgtcc ctttgttgaa
     1141 ggtaataaat aagttattga gttcaatcat attaacctcg cttaccgagc aatttgtgtt
     1201 taattcgagg aaccactaat acaatcacca ccaataacgc cgtaattaaa ttcagatctt
     1261 gcgggccaaa gccaatgccg tttaaagttt cgttatttaa tgctagtgcg atgaagaaac
     1321 gataaagaat tgagccaata atcaccgcaa aggtaagcca aataatccgt tttaccgaaa
     1381 aaattgcttc cccgataatt accgccgcca agccaatcac gatagttcct accccaatcg
     1441 aaatatctac accaccgttg ctttgcacat acaaagcacc acctaaggca attaacgcat
     1501 tagaaatcgc catccctaaa atcgtcattt tattaatcgc aataccctgt gctttcgcca
     1561 ttcggctatt agtaccggtt gcccgcacag ccaaaccgat ttcggtcgca aaaaagaggt
     1621 caaacaaacc ttttacgata ataacaacca gcaatgtcat cactaatcgt actaaggcta
     1681 actgtagatc gctttcaatc ggcattacat cgtaaatcgt ggtttcgcct aaaatagcaa
     1741 tattcggcat tcccataatg cgtagattaa tcgaatagag tgcgatcatc attaaaatac
     1801 tggcaagcaa tttttcgatt ttaaagccga tatgcaaact tgcagtaacc ataccggcta
     1861 ctgctccggc aagcgtgccg tataaagttg ccagccaagg atcaacttga ttcaaaatgc
     1921 tgatcacaca caccgcccct cctaaaggga aactgccgtc tgcggtcaga tccggaaaat
     1981 ccagaatttt ataagaaatt aataccccaa gggcaacaag ggaataaatt aaccccagct
     2041 ctaacgcccc aatccaagtg atattagtta aaaaggcact caaaaaatga ataagactgt
     2101 ccatttgttt attatagtta atgaaat
//
LOCUS       DANLUT010000232         2094 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLUT010000232 DANLUT010000000
VERSION     DANLUT010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXB38_002456"
     CDS             complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXB38_002456"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL5354700.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT          547 a          527 c          376 g          644 t
ORIGIN      
        1 cacgcattct atttcctata ttctaaaaat aatagagtat tttatacttt agttaaatac
       61 ccgctgcttt atattaaagg gcgtatttta tacgcccaat tttgttattt ataattaagc
      121 ctttacattc gcttttaaga acgcaagtaa gctctctttg gcgatcatct gtttttcacc
      181 gctgcggcgg tttttgtatt cgatttcgcc gttctcgagg tttttctcac caataaccac
      241 catatgcggc acaccgataa gctccatatc cgcgaacatc acgcccgggc gttctttacg
      301 atcatcaaaa atcacctcaa cgccttgagc ttttaagtta gcgtataact cttcagcgaa
      361 tgcctgcact ttttccgatt tgtgcatatt catcggcaca atcgccaccg taaatggcgc
      421 catttcatca caaggccaga taataccacg atcatcataa tgttgttcaa tcgcagctgc
      481 caccacacgg gtaacgccga taccgtaaca acccattgtc atcactagcg gtttaccgtc
      541 ttcaccttgc acagtggctt tcattgcttc tgagtatttt ttgcctaatt ggaaaatatg
      601 ccctacttca atacctcgtt tgatttgaag tgtgccttta ccgtccgggc ttgggtcgcc
      661 ttccaccaca ttgcgtaaat ctgcaatttc cggcacagca acatcacgct cccagttcac
      721 gttaaagtag tgtttgccat caatattcgc accgcagcca aaatctgaca tcaacgccac
      781 tgagcggtca ataatcaccg gaatcggcat attcaccaca cctaacgagc caacaccggc
      841 accgattttg gctttaattt ccgcttcatc ggcaaactca agcggatcag ccaccaacgg
      901 gtgtttttga gctttaattt cgtttaactc gtggtcgcca cgaatcacta acgcaattaa
      961 cggttgctct tcagttgccc ctttcaccac taaggttttc accgtttttt caatggctaa
     1021 accgtgattt tctactaatt cattgatggt tttcgcattt ggcgtatcca ctaattgcat
     1081 ttctgccgtt ggtgcttggc gttcacccac cgcaaccgct tcggctaatt caatattggc
     1141 agcaaaatct gattcggttg aaaataccac atcatcttca ccgcttgagg ctaacacttg
     1201 gaactcgtga gaggctgaac cgccgataga gccggtatct gcctgcaccg cacggaaatc
     1261 taagcccaaa cgggtgaaaa tattgctgta aacctgatac atcacatcat aggtttcttg
     1321 caggctctct tgtgtggtgt ggaaagaata ggcatctttc atcacaaatt cacgcgaacg
     1381 cattaccccg aaacgagggc ggacttcatc acggaatttc gtttgaattt ggtataaatt
     1441 cagcggaagt tgtttgtacg aagaaacttc acggcgaacc aagtcggtaa tcacttcttc
     1501 gtgagtcggg ccaagcacga aatcacgctc gccacgatct ttaaaacgta ataattccgg
     1561 gccgtaatca ttccaacgac cggattccac ccataattcc gccggctgaa ccaccggcat
     1621 taatacctcg atagccccgc ctttgttcat ctcttcacga ataatatttt ccactttttt
     1681 caacactttg atcccggtcg gcaaccagtt gtataaacct gacgccatcg ggcgaatcat
     1741 tccggcacgc aacattaatt gatggctaac tacttgtgca tcattcggca tttctttaag
     1801 ggttgaaaat aaatattgac ttgtacgcat tgctattcct attcttttta aactttgaaa
     1861 cctgaaaaaa tctgcttatt ttaaaacaaa gcggttaaat tttcaggaaa ttttgcaaaa
     1921 tcctataaaa aaataaccgc ttgtaagcgg ttattttgtt ttaactaagg gtattttctt
     1981 aaactgtgta tgcttaattt tctcgttcaa tttgctcaat aatctcttgc cattcggcat
     2041 ttgcttgttc aagagtaaaa atctgacctt tttcgatttc tgccagacct tttt
//
LOCUS       DANLUT010000233         2090 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLUT010000233 DANLUT010000000
VERSION     DANLUT010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(70..1203)
                     /locus_tag="PXB38_002457"
     CDS             complement(70..1203)
                     /locus_tag="PXB38_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL5354701.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAV
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1220..2032)
                     /gene="dapB"
                     /locus_tag="PXB38_002458"
     CDS             complement(1220..2032)
                     /gene="dapB"
                     /locus_tag="PXB38_002458"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL5354702.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DTGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKHDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
BASE COUNT          598 a          497 c          371 g          624 t
ORIGIN      
        1 tattaaaaaa gaaaacggtc agattggtaa aatctatacc taatatgacc gcttgtgaat
       61 acaaaaaaat tacttcaact gtttaaaggc ttgcagtaaa tcagctttaa tatcttcaac
      121 gtgttctaaa ccaacggaaa aacgcagtaa attattcgta atgcctcgtg taatacgttc
      181 tgcttccgga atatccatat gggtttgtgt tgcaggataa gtaataaaac tttctgcacc
      241 acctaaactt tccgcaaagg taatcaattt aattgccttg agaaatttcg ctacccactc
      301 ttctttttgt aaacggaaag ataacatacc acttttgcct gaatataaca cgctgtcaat
      361 ttcaggttgc tctgctaaga atttagccag ttcggtggca ttagactgat ggcgttccat
      421 tcgtaatgcc aaggttttca taccacgcac ggcaaggtaa gaatcaaatg gcgacagcac
      481 tgcaccggca cagttttgga aatagaataa acgctcggtc aaattctgcc cgtttacttt
      541 ggtagcatca gaatctttcg caacaattaa gccggctaac acatcattat gccccgaaag
      601 atacttggtc gcactgtgaa tcacaatatc agctccgtgc tcaatcggac ggaataacgc
      661 tggggttaag aacgtattat caacgatcag cattaaattg tgttttttcg caattttagc
      721 aatgacagca acgtcgcact cctccatcaa tggatttgac ggcgtttcca cgaaaatcgc
      781 cttagtattc ggtgtaatag ctgcttcaat cgctgctaaa tccgctgtat taacataaac
      841 tggctttaat gtgccgtgat ttttgtggct aaaatcaaac aagcggtaag aaccaccata
      901 aacatcgctg gaaataatcc attcatcagg tgctttaaat aatgacatta ctagctgaat
      961 cgctgccatt ccagatgcca tcgcaaaacc ggcatcaccg ccttctaaat ccgcaatccc
     1021 ctgctctaat acagctcgag ttgggttttt ggtacgggtg taatcccagc cggtagattc
     1081 gcctaagcca tcacgcccgt aagcagttga taagataatc ggcattgcca ccgcccctgt
     1141 acgaggatca gttctgttac cgatttgcac taatgtggtt tcaatattat tgaattttgt
     1201 cattgttatt atccttcaat tacagattat ttagatccaa tacgtctgtc atatcaaaca
     1261 agccattttg tttgccattt aaccattttg cagcacgcac tgcgccattg gcaaacgtca
     1321 ttcggctaga ggctttatgt gcgatttcga cacgttcgcc ttcatcagcg aaccatacac
     1381 tatgctcccc tacaacatca ccggcacgaa tagtagcaaa gccgatttca tcatgtttgc
     1441 gttcgcctgt aataccgtta cgttcaaata cgccatgagt tttcaagtca cgcccaagag
     1501 ttttggcaat atgttctccc attgataaag ccgtacctga tggtgcatca actttatggc
     1561 gatggtgtgc ctcaatcact tcaatatcac aataatcgcc cattactttt gctgcttttt
     1621 cgagcagttt aaacaccaga ttcaccccaa cgctgtagtt tgaggcaaaa acgataccga
     1681 ttttttcact cgctgctttg attgcagctt tacctgcatc atcaaaaccg gttgtgccaa
     1741 tcaccatttg tttatgatga gccacacaaa tatccaaatg ttctagcgtg ccttcagggc
     1801 gagtaaaatc aattagtaaa tcaaaacctg ctacattttg ggcgacatca tcagaaatca
     1861 ccacacctaa tgtaccaacc ccggctactt caccagtatc actacctact aatgatgaac
     1921 ctttacgctc aaaagcagac cctaattcta cgccttgtgc attatggacg gcttgaatta
     1981 attgacgccc cattcgccca ccggcaccga cgattccaat ttttaatgtc atatttgttc
     2041 ttccttttta tatttgtttt ttacaagcgg ttacattttt aattaatttt
//
LOCUS       DANLUT010000234         1996 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLUT010000234 DANLUT010000000
VERSION     DANLUT010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            43..1695
                     /locus_tag="PXB38_002459"
     CDS             43..1695
                     /locus_tag="PXB38_002459"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL5354703.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMLNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
     gene            1705..1923
                     /gene="ilvM"
                     /locus_tag="PXB38_002460"
     CDS             1705..1923
                     /gene="ilvM"
                     /locus_tag="PXB38_002460"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL5354704.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSTFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
BASE COUNT          574 a          421 c          445 g          556 t
ORIGIN      
        1 gcctggtttt aaaataataa aaatattaag gacacaacat ccatgaatgg agcaagattt
       61 atcaccgaga gtttaaaagc tcacggggta acgacacttt ttggctatcc gggcggggct
      121 attatgccta cctatgatgc aatttatgat tcaggcttag atcatttact ttgccgcaat
      181 gaacaaggtg ctgcaatggc agctatcggt tatgcccgtg caacaggtaa agtaggggtt
      241 tgtattgcga cctccggccc tggggcaact aatttaatca ccggtttagg cgatgccgca
      301 cttgattcta ttcctgtggt agcaattacc ggacaagttg ccagccattt aatcggcact
      361 gatgccttcc aagaagctga tgtactaggt ttgtcactcg cttgcactaa acacagtttt
      421 attgttcaga atattgagga gctccctgaa attttagccc tcgcattcca aattgcacaa
      481 agtggcagac ctggtccggt gctggtcgat attccacgtg atgtgcaact agctcaaact
      541 tcggctctgc ctatcgttta tcctaaagaa cctgccgatg cacaagatcc caacaaatta
      601 gtggttgcca aacaattatt agccaccgcc aaacgcccgg tactttatgt cggcggtggc
      661 gttagtatgg ctgatggtgt acaagcggtc agaaattttg taaaaattgc aaatattccg
      721 tctgtttcta ccttaaaagg gttaggcact atcgatccaa ccgatccgct ctatatggga
      781 atgatcggta tgcacggcac aaaagcagca aattacgcgg tacaagagtg tgatttactc
      841 attgcctgtg gtgcccgctt tgatgaccgt gttaccggca aattagacac ttttgcccct
      901 cacgctaaag tgattcacat tgatatcgac aatgcggaaa tcaacaagct ccgtcaagca
      961 caagttgcct taaaagggaa tttgattgaa gccgtgaatt acttggctca accgttagat
     1021 attgaaccat ggcgtgaaga tgtgcgtaat ttaaagcagc aatttgactt tcaatatcaa
     1081 gaaaatagtg gtgatggcaa tattgatgcc gtggcgttat tacacacgct ttcacagcgg
     1141 aaagccaaaa acagcatcgt cactaccgat gtagggcagc atcaaatgtg gtcggcacaa
     1201 catttaactt atcacgatcc gaaaaactat atcacctctg ccggttttgg ctctatgggt
     1261 tttggcttgc ctgcggcgat tggggcaatc aaagctcgag cggaagatca ggttatttta
     1321 attaccggtg atggctcgat tatgatgaat attcaagaac tcggcacgct taaaagagct
     1381 gatttagcgg tcaaaatcct attactggat aaccaacgtt taggtatggt tcgccaatgg
     1441 caatcgctgt tcttccacgg gcgacacagc caaaccattt tagatgataa ccctgatttt
     1501 gtgttgttgg cgaaagcctt tgatattgac ggtgagcgaa ttgagaaagc gagcgaagtg
     1561 tcagatgcaa tagacagaat gctcaatgcc aaaggggctt acttacttca cgtttgtatt
     1621 ccacaggaag ataacgtttg gccactggtg ccgccggggg cgtgtaatgc cgatatgtta
     1681 gacgatgagg tataggagaa taagatggaa gaatatcaat taacgcttaa agctaacaaa
     1741 cgccctgaaa ccttagagcg tattttacgg gttatacgtc accgtggttt tgaggtgaaa
     1801 tgcttaaatg tagaatcaac agacagcacc tttaacctaa attttacatt agcaagtaaa
     1861 cgtccactct ctcttttaag ccatcaatta gaaaaactgt ttgatatcat tgaaatcaat
     1921 taatcagact tttcattcgc cgtgtaaaaa aatacacggc ttttttatgc ttaaaattta
     1981 tcattcgcta tccttt
//
LOCUS       DANLUT010000235         1995 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLUT010000235 DANLUT010000000
VERSION     DANLUT010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            152..574
                     /locus_tag="PXB38_002461"
     CDS             152..574
                     /locus_tag="PXB38_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005579070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF417 family protein"
                     /protein_id="HDL5354705.1"
                     /translation="MRALIHTFRSTTLDITILRLSVCLIFFTFGMTKWFDFEVEILKP
                     MISPTWLNFLYEWLGYHGTSYFLGVVEGIAYIALAVGYWKPRWGIIGSMTVLLVSSVT
                     LSLLLQLGFNSFIFKDILLIGAGLVLLKYDLNRLYPHE"
     gene            806..1958
                     /locus_tag="PXB38_002462"
                     /pseudo
     CDS             806..1958
                     /locus_tag="PXB38_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251678.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
BASE COUNT          639 a          336 c          390 g          630 t
ORIGIN      
        1 ttcatcaatt ctgtactgtt cattttattc tctgtgatag ctttgattaa tggtgctgaa
       61 aataccgatt ttcattttaa attgcaaata cttgtcagaa acacgcttga tctatgtcta
      121 atatacttca ttttttaact taggtatgac gatgagagca cttatccaca cttttcgtag
      181 cacgacttta gacatcacga ttttacgtct tagcgtatgt ctaatcttct ttactttcgg
      241 tatgacaaaa tggtttgatt ttgaggtgga aatccttaag ccgatgatca gtccgacttg
      301 gttgaatttt ctctatgagt ggctaggcta tcacggcaca agttatttct taggtgtggt
      361 tgaagggatt gcttatatag cacttgccgt tggctattgg aaacctaggt ggggaattat
      421 cggttcaatg acagtattac tggtttcatc tgttacactt agcctgttgc tacagcttgg
      481 ttttaacagc tttattttca aggatattct acttatcggc gcaggattag tattattaaa
      541 atacgatcta aaccgccttt acccccacga atagctcacg ttgttttttg atctgcccca
      601 aaagttggac taagccgtga gtaatacaga actcactcct tgaattaaat gaaaagatgg
      661 tcatattgta caatccactt atcaacgtat ttttatccgc cataaaaagt aggtcgggca
      721 tctatgcccg acaattttcc gatatattca accattgtac cgataatata aattttcggg
      781 catttatgcc cgacttggag acaaaatgca aacgaaatta aataccgaaa tcaccattga
      841 aaaactgtgc gaaggttttc aatataacga acttgaaggc aaaggcttat ttggtttaaa
      901 cggtaaatta actattcagc ctgaatatca acgtaactat atttatgcgg acggtaaaaa
      961 agatgtggcg gttattcact ctattttgaa aggctatcca cttggtttga tttattttaa
     1021 tcaaacagat gatgataaat ttgaagtgtt agacggtcag caacgcatta ctagtatcgg
     1081 gcgatttgtt acgaataaat ttgccatttt agatcaaaat aatatccctt gctatttttc
     1141 cagtttgcct gaagataaac gccaattcat tttaaatacc acgttattaa tttatgaatg
     1201 caaaggcact gaaagcgaaa ttaaagagtg gtttaaacgc aggcgtacca ctcaatgagc
     1261 aagaattatt aaatgctgtt tattcaggct catttgtcac ccttgctaaa gcagaattta
     1321 gcaattctca aaatgccaat gtgcaaaaat ggtcggcatt tgtgaaaggt tcagttattc
     1381 gccaagattt tttggcttgt gcgttaaatt gggtaagcaa gggaaatatc agtgattata
     1441 tgagtcgcca tcgttttgat gagaatatcg ctgaattgaa aacttacttt actaccgtga
     1501 ttgattgggt aaataccaca ttctttgatg ctaaaaaaga gatgtgtggt ttagaatggg
     1561 gcagacttta tgaaaattat ggcaagcaag cttatgattt aagcaaaatt aatgctgaaa
     1621 ttgaccgctt ttatgatgac ccttgtgtga aaaaccataa aggtatttgg gaatatgtat
     1681 tgggcggaat gacagataaa cgtttgctag atattcggat ttttgacgac aaaacaaaaa
     1741 aagataccta tagcaagcaa accgaaaaag ccaaagtagc caatcactct aactgcccat
     1801 tgtgtgctgt gagcgataat aacaataaaa ccaaaatttg gacattaaaa gagatggaag
     1861 ccgaccacgt tagtgcctgg agtaaaggag ggttaactgg agcagaaaac tgcgaaatgt
     1921 tgtgtatcag ccataatcga gcaaaaggaa acaaatgata attttacaaa cggttagttt
     1981 caacgaaaat ttgca
//
LOCUS       DANLUT010000236         1919 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLUT010000236 DANLUT010000000
VERSION     DANLUT010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..1364)
                     /locus_tag="PXB38_002463"
     rRNA            complement(<1..1364)
                     /locus_tag="PXB38_002463"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(1681..1756)
                     /locus_tag="PXB38_002464"
     tRNA            complement(1681..1756)
                     /locus_tag="PXB38_002464"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1721..1723),aa:Ala,seq:tgc)
     gene            complement(1813..1889)
                     /locus_tag="PXB38_002465"
     tRNA            complement(1813..1889)
                     /locus_tag="PXB38_002465"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1853..1855),aa:Ile,seq:gat)
BASE COUNT          426 a          536 c          362 g          595 t
ORIGIN      
        1 cagcctcgcc ttaggggccg actcaccctg ccccgattaa cgttggacag gaacccttgg
       61 tcttccggcg aacgagtttt tcactcgttt tatcgttact tatgtcagca ttcgcacttg
      121 tgatatctcc agcagacttc tcaatccacc ttcatcgact tacacaacgc tcccctaccc
      181 aacagacttt cgtctgatgc cgcagcttcg gtgctatatt tgagccccgt tacatcttcc
      241 gcgcaggccg actcgactag tgagctatta cgctttcttt aaatggtggc tgcttctaag
      301 ccaacatcct agctgtctaa gccttcccac ttcgtttccc acttaatata gactttggga
      361 ccttagctgg cggtctgggt tgtttccctc tccacgatgg acgttagcac ccaccgtgtg
      421 tctcctgagt atcactcttc ggtattcgca gtttgcatcg ggttggtaat ccgggatgga
      481 cccctagccg aaacagtgct ctacccccga aggtgtccgc tcaaggctct acctaaatag
      541 atttcgggga gaaccagcta tctcccggtt tgattggcct ttcaccccca gccacaagtc
      601 atccgctaat ttttcaacat tagtcggttc ggtcctccag ttagtgttac ccaaccttca
      661 acctgcccat ggctagatca ccgggtttcg ggtctatacc ttgcaactac acgcccagtt
      721 aagactcggt ttccctacgg ctcccttatt cagttaacct tgctacaaaa tataagtcgc
      781 tgacccatta tacaaaaggt acgcagtcac aagattactc ttgctcccac tgcttgtacg
      841 cacaaggttt caggttctat ttcactcccc tcgccggggt tcttttcgcc tttccttcac
      901 agtactggtt cactatcggt caatcaggag tatttagcct tggaggatgg tccccccatc
      961 ttcaaacagg atatcacgtg tcccgcccta cttgttgtta gcctagtacc acaatggagt
     1021 tttaaggtac gggattatca ccctctacga ttgtccttcc cagaacattc ccctaacttt
     1081 actgctatca ctaactggct ctttcgcgtt cgctcgccgc tactaacgaa atctcggttg
     1141 atttcttttc ctcggggtac ttagatgttt cagttctccc ggtttgcctc acacagctat
     1201 gtattcactg ggtgatagta ggttcttcac ctactgggtt tccccattcg gacatcttgg
     1261 attaaacgcc tcttatcgac tcatccaagc ttttcgcaga ttagcacgtc cttcttcgcc
     1321 tctgattgcc aaggcatcca ccttgtgcgc ttagtcactt aactatacaa cctcaaatgt
     1381 tttctaaaac ttctcaaaaa taaaagtaaa aaaacaatga agtcagtttt acaactaaac
     1441 acttgactgc ttttgttcag tcaagatttt ttctactcag actttcaatt tattcgttat
     1501 cacttatgta taattactta tgcgtaacga acttgaaata tctctcagtt tttcagcttg
     1561 tttctatatt gttaaagaac aaagataatg gctttcgcct atcatcatac ctaaaattgc
     1621 aaataatccg gtatttttaa ccgcttgtaa tcttaggtat gatgataaag tcacgatgat
     1681 tggtggagat aagcgggatc gaaccgctga cctcctgcgt gcaaggcagg cgctctccca
     1741 gctgagctat atccccattt catcttccgt tttcttcact catagtcgct tcgctttcgc
     1801 ttgccttctg agtggtgggt ctgagtggac ttgaaccacc gacctcaccc ttatcagggg
     1861 tgcgctctaa ccacctgagc tacagaccca acggatgacc ttcggttttt tgtcttctt
//
LOCUS       DANLUT010000237         1885 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLUT010000237 DANLUT010000000
VERSION     DANLUT010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(327..1568)
                     /locus_tag="PXB38_002466"
     CDS             complement(327..1568)
                     /locus_tag="PXB38_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL5354706.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEVNNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
     gene            complement(1568..1879)
                     /locus_tag="PXB38_002467"
     CDS             complement(1568..1879)
                     /locus_tag="PXB38_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354707.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
BASE COUNT          549 a          381 c          328 g          627 t
ORIGIN      
        1 atgtctgcca tctgctaggc attatatatg cctagattag tttcctacat ttgcgttttt
       61 aaggctacgc ttccttgcgg atatggttga gaaaaaagtc aagtgttact aatggtttta
      121 taagatgttg gtttgttctg gtgtctgcca ccgctaggtc tttataccct agattagtat
      181 caggtctttc tggtgcctgc caccgctagg cctttacatc ctagattaat atcagattga
      241 caatgagcca acaactcatt gcgttattaa ggtaacgcta cttttttaga acatagacta
      301 cgatgattgg ttccacaagt caattactat acattaaatg caaatttcat ctgctcttgc
      361 tcttggcgtg gaataccaat ttcttttgcg acattttgcc aattattaac ttctttcagt
      421 acttcatcat aaatctgtac ggcttgttgc ttagataatt gaaaaaagtc agcaacatca
      481 aaggcgagct gataatccaa tcggttatcg ctgtctgtta tgtttaaatg taatccttga
      541 gatagtggta ctgggtttaa atcgtatgcg ggagataata tccacccctc ttgagcgtag
      601 ataaatccgt ggttacgcaa atgatcatca gtattcgaaa tagcaatatt gaatacaatt
      661 cttctccata gttgagccaa gtcaattcga gtatttgaac cactttctgt taaaaattga
      721 gcaatctcaa ggtagcttgc ctcatagtct ccgtcataat aacccagctg ggttaatgct
      781 gacgtaaaat ggcgacgttt tccacaatgt cgatcaaatc tttgtgtcaa aaaagtatgg
      841 tgttcttggt taaagcgttc aattctacaa gtagccattt caattttggc ttgaatagcc
      901 agtcgataag ctaaatattc ccaaagagca atatcataat catcgtaccg acttggaaat
      961 ttggcaatcc atagttgatt tagttcatct attaccgaag cttttggtct agctccgcct
     1021 agtgacgacc ctggtgatat caacatatga agccatttta aataatccgg atcgtccaca
     1081 ttatcactgc tttcaagttg tattgctgca aattctaatt ctcttaagga agacagtggt
     1141 ggtgctgcaa gacgagtatt attgtccaaa aatggaccat tcaattcagt tttaaaacgt
     1201 aaagccccca ttctattcat atcgtgtacg cctaaaaggt aatcactttc tattagtaac
     1261 ttaggtttac gattctcttg actagctaga gctgcctccc gacgtttcat taacaatcta
     1321 ccccatctat cagggcaaga atctaaaaag atatgaaaat tttgtgtatc tgtactgtat
     1381 tgctctccag ggtaaaggta taagttagga tcaatctgct gtacataggg tgaacttaac
     1441 cactcgttat cgtagctaaa acggaaattt tctttgcctc tcactacatc agaagaaagc
     1501 accccaacta attcaggctg tgaaaaagtt tcccaatctg caaacacata aattcgttta
     1561 ttcatcatta tttccttaat aattcaatat cttgcaattt acgtcctaac tcatcatcct
     1621 ttccaacatc agtgaaatct tgttctagac cgagaacacc taaaaccatt aggtagtatc
     1681 caatcgcaac agttggatca ccattcataa tttttctcac tgttacacgg ctaagcccag
     1741 ttctttgagc caataatgtt tgagtaaaca ttctcctttt tgaggctagc ctaatatttt
     1801 ctccaagttg aagcaaggca ttttggtact taggaaacag agttggtgat tttgttttac
     1861 tgagcattat tattaccatt tttat
//
LOCUS       DANLUT010000238         1835 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLUT010000238 DANLUT010000000
VERSION     DANLUT010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>1835)
                     /locus_tag="PXB38_002468"
     CDS             complement(<1..>1835)
                     /locus_tag="PXB38_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354708.1"
                     /translation="DRDEIWTAFIALESDQCPAIERLLTWCQKSSGQENIEPEALLLG
                     AIAVSWLFTSTDKRSRNGYINALAHLLWNRLEIALALFKEFIEVNDPYVMEGILSAIH
                     GAVAYSENSSGLKALALEIDNQIFNQPETEEIYPNVLVRNYARHIIEYSLQKDEYSSD
                     DIEIIRERITPPYRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTTEYGRGMCGYGDFG
                     RYTFEAKFRNWESYKFGNLINVDLLSNYACQMIFEQFGYDDKKHLEFDKETRSRYWRR
                     DDTNKIERIGKKYQWLALYEILARVMDNFPAFSNRYADEIGLEYITNLDNFYLPKTQI
                     KIVPPTKTDVFFQYINQKQCKTKHYFTIQNDELIDDWVKINDFPDVSNLLEVTINDEQ
                     WLVLERHDDFRELAKFGQKETYDRQMWLQIRSYLVKEFQFSKAKNWLAQQDFMERWMP
                     EGNEHYGMNIHQFFAENTLNEWQEIYRHRENESPSFKVIPSVDSHTWESTYGNDGISF
                     YAPIPMLYHGMKMKNAIKDGYWVDLQNNLVCFNPEINEKFQNSLLVKKDKFLDFLKEH
                     KLKLVWTVLGEKHAYKESKFLQELSGVYYLYGKNQQVQGSIKHLG"
BASE COUNT          588 a          345 c          246 g          656 t
ORIGIN      
        1 gccccaaatg tttaatactg ccttggactt gttgattttt accatataga taataaacgc
       61 ctgaaagttc ttgtaaaaat ttactttctt tataagcgtg tttttcaccc aacacagtcc
      121 aaactaactt taacttatgc tcttttaaaa aatccaaaaa tttgtctttt ttaaccagta
      181 agctattttg aaatttttca tttatctctg gattaaagca aaccaaatta ttttgtaaat
      241 caacccaata accatcttta atcgcatttt tcattttcat tccgtgataa agcataggaa
      301 ttggcgcata aaatgaaatg ccgtcattgc cataagtaga ttcccaagtg tgagaatcga
      361 cactaggtat taccttaaat gaaggcgatt cattttccct atgtcgataa atttcttgcc
      421 actcatttaa tgtattttcg gcaaaaaatt gatgaatatt cattccatag tgttcattac
      481 cttctggcat ccatctttcc ataaaatctt gttgtgccaa ccaatttttt gcttttgaaa
      541 attgaaattc tttaactaaa taacttctaa tttgtaacca catttgccta tcataagttt
      601 ctttttgccc aaattttgct aattcacgaa aatcatcgtg tctttctaga acaagccact
      661 gttcatcatt aatcgttact tccaaaagat tactaacatc aggaaaatca tttattttta
      721 cccaatcatc aattaattca tcattttgaa tggtaaaata gtgttttgtt ttacattgtt
      781 tttgatttat gtattgaaaa aatacatctg ttttagttgg cggtacaatt ttaatttggg
      841 ttttgggtag ataaaagttg tccaaattag taatatattc aagccctatt tcatcggcat
      901 agcgattaga aaaagcagga aaattatcca tcacccttgc caagatttca tacaaagcca
      961 accattgata tttcttgcca attcgctcaa ttttattagt atcatctctt cgccaatatc
     1021 ttgaacgagt ttctttatca aactcaaggt gcttcttgtc atcatagcca aattgctcaa
     1081 aaatcatttg gcaagcataa ttacttaata aatcaacatt gatgagattg ccgaatttat
     1141 aactctccca atttcggaat ttggcttcaa aagtatatct gccaaaatca ccatatccac
     1201 acataccacg accatattca gttgtcattg aacggataat gattctttgt ccatcagaat
     1261 gatatttttt atcaatttct tcattggttg gtaagttttg gggaaatgaa cttctataag
     1321 gtggcgtaat tctttctctg attatctcaa tatcatctga tgaatattca tctttttgca
     1381 aagagtattc aataatatgg cgagcataat tacgaaccaa aacattggga taaatttctt
     1441 ctgtttcagg ttgattaaat atttgattat ctatctctaa tgcaagtgct tttaagccag
     1501 atgaattttc agaataagca acagctccgt gaatggcaga taaaatacct tccataacat
     1561 aagggtcatt aacctctata aattccttga ataacgccaa tgcaatttcc aatctattcc
     1621 ataataaatg agccagtgca ttaatatagc catttctact tcgtttatcg gtagaagtaa
     1681 atagccaact aacagcaatt gcacccaata atagtgcttc aggttcaata ttttcttgac
     1741 cacttgattt ctgacaccaa gttagtaatc gttcaattgc tgggcattga tcagactcca
     1801 aagcaataaa agctgtccaa atctcatctc tatct
//
LOCUS       DANLUT010000239         1783 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLUT010000239 DANLUT010000000
VERSION     DANLUT010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..319
                     /locus_tag="PXB38_002469"
     CDS             <1..319
                     /locus_tag="PXB38_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL5354709.1"
                     /translation="VVMIANLLVMVIVGGYETFVSRLKVDDHPDQPEWLDHVNATILK
                     VKLSMAIISISSIHLLQTFINASNLDEKQMMWQVVIHLAFIVSALAMAYIDKMLNSGH
                     MKH"
     gene            396..1766
                     /gene="gorA"
                     /locus_tag="PXB38_002470"
     CDS             396..1766
                     /gene="gorA"
                     /locus_tag="PXB38_002470"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL5354710.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEEEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
BASE COUNT          536 a          269 c          412 g          566 t
ORIGIN      
        1 tgtggtgatg attgcaaatc ttttggttat ggttattgtt ggaggatatg aaacttttgt
       61 ctctagatta aaagtagatg atcaccctga tcagccagaa tggttggatc acgttaatgc
      121 gactattttg aaagtaaaac tttcaatggc aattatcagt atttcttcta ttcatttatt
      181 acaaacattt atcaatgctt caaatcttga tgaaaagcaa atgatgtggc aagtagttat
      241 tcacttagcc tttattgttt cagcattagc gatggcgtat attgataaaa tgttgaattc
      301 agggcatatg aaacattagt cttctatgca aatttaattt gataaagcgc ttaacgaata
      361 agttgctttt gtttttatag atcgaggaat agcttatggc taaacattat gattatattg
      421 ctatcggcgg tggtagtggt ggtattgctt caattaatcg agcagcaagc tatgggcaaa
      481 aatgtgccat tattgaagca aaacatttag gtggcacttg tgtgaacgtg ggatgtgtac
      541 ccaaaaaagt gatgttctat ggtgcacaag ttgcagaagc gattaaccat tacgcccctg
      601 attatggttt tgacattacg gtaaataatt ttgattatgc caaattagtt gagagtcgcc
      661 aggcctatat tgggcgcatt catacctcat atggtaatgt gctggcaaaa aataatgttg
      721 atgttttaaa tggttttgct cgctttaaag atgctaaaac attagaagtg agttatgctg
      781 atggttccgt tgaggaggtc acagcagacc atattctgat tgcaacaggt ggtcgtccaa
      841 ctgtacccaa tgtgaaaggg gctgaatacg gtatcacttc tgatggtgta tttgcactag
      901 atgctttacc gaagtccgta gcaattgtgg gggcagggta tattgcagtt gaattagctg
      961 gagtatttaa tagtttagga gtaaataccc atctttttgt tcgtcaacat gctccaatgc
     1021 gtaatcaaga cccattaata gtggatacat tgcttgaagt attagctcaa gatgggatcg
     1081 aattacatac acaagcgact cctcaagaag tagttaaaaa tgcagatggt tcattgacat
     1141 taaaattgca agatggtcgt gaaacctctg ttgaaagctt ggtgtgggct attggtcgtg
     1201 agccagcgac agataagatt aatttagagg ctgctggtgt tgaaaccaac gagcgtggtt
     1261 ttatcaaagt ggataaattc caaaatacta atgtgccaaa tatctatgct gttggtgata
     1321 ttattgaagg tggtattgaa ttaactcctg ttgcagttgc agctggtcgc aggctatcgg
     1381 aacggttgtt caataataaa ccaaatgaac atttggatta tagcttagta ccgacagtcg
     1441 tttttagcca cccaccaata ggtactgttg gtttaagtga gccaaaagcg attgagcaat
     1501 atggggcaga aaatgtgaaa gtgtataaat cttcatttac tgcaatgtat actgcggtta
     1561 cacaacatcg tcaaccttgc cgaatgaaat tagtttgtgt tggggaagag gaaaaagtgg
     1621 ttgggttaca tggtattggt tttggtgttg atgaaatgat tcaaggtttt gctgttgcaa
     1681 ttaaaatggg cgcaacgaaa gctgattttg acaacacagt ggctattcac ccgacaggat
     1741 ctgaagaatt tgtaaccatg cgctaaatgt aataaaatgt tac
//
LOCUS       DANLUT010000240         1776 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.241, whole genome shotgun sequence.
ACCESSION   DANLUT010000240 DANLUT010000000
VERSION     DANLUT010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(71..196)
                     /gene="ykgO"
                     /locus_tag="PXB38_002471"
     CDS             complement(71..196)
                     /gene="ykgO"
                     /locus_tag="PXB38_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL5354711.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            complement(205..477)
                     /locus_tag="PXB38_002472"
     CDS             complement(205..477)
                     /locus_tag="PXB38_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL5354712.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            671..1348
                     /gene="rpe"
                     /locus_tag="PXB38_002473"
     CDS             671..1348
                     /gene="rpe"
                     /locus_tag="PXB38_002473"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL5354713.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGMKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
     gene            1535..1765
                     /gene="acpP"
                     /locus_tag="PXB38_002474"
     CDS             1535..1765
                     /gene="acpP"
                     /locus_tag="PXB38_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL5354714.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
BASE COUNT          552 a          285 c          368 g          571 t
ORIGIN      
        1 taaaataggt aatattgaga agatgaaata aaaaacacct taataaatta gcttattaag
       61 gtgctggttt ttaacgctga cgagctttaa atctcgggtt ggttttgcaa atcacataaa
      121 gtttgccttt gcgtctgaca atttggcaat ccgggtggcg tgattttgcg gttttaagtg
      181 agtttaagat tttcatttta tcctctattt ttgatttgaa agcgttgaag caaagccttt
      241 aaatctatct ttaaattgac ttgcacgacc ttctgtattc acttcacggc gtttacctgt
      301 gtaaacaggg tgagacgccg atgaggtgtc taaggtgtaa agtgggtatt ctttgccatc
      361 ttcccatacc attgttttgt tggttgccgc acaagaacgg ataacccagc cttgttgcac
      421 tgaggcatca tagaacaaca cttcacgata attttcagga tgaatccctt ttttcatatt
      481 ttctccagaa tttagataag gtcattaacc ataattaaaa tatgggatac ataatatacg
      541 aactttaaat acaattccat aactttttta tggtgttttg taaaaaaacg gatttttagg
      601 aagagagact cttttcgctg ttaaaattat ggtaatctaa cgtagattta ttttttgata
      661 gtgaggaaat atgagtaaga atccttattt aattgcaccg tctattttat ctgccgattt
      721 agctcgcttg ggtgatgatg tggcagaggt gttaaaagcc ggtgcagact taattcactt
      781 tgatgtaatg gacaaccact acgtgccgaa tttgaccttc gggccggcga tctgcaaagc
      841 cttacgtgat tacggcattc aatgcccgat tgatgtgcat ttaatggtaa aaccggttga
      901 gcgtttgatt ccggattttg ccaaagccgg agcggattat attacattcc accctgaagc
      961 aacggaacat atagatcgaa atttacagct tatccgtgat ttaggttgta aatcaggctt
     1021 ggtgtttaac ccggcaacgc cattgagcta tttagattat gtgatggata aagttgacgt
     1081 ggttttattg atgtctgtga atccgggctt tggcggacaa tcatttattc cgtccacctt
     1141 agataaattg aaagaagtcc gtcgtcgtat tgatgagagc ggttataaca ttcgcttaga
     1201 ggttgatggt ggtatgaaaa taaataacat tgccgacatt gcagccgcag gagcagatat
     1261 gtttgtggca ggttctgcga tttttgacca gccagattat caagcagtga ttgcacaaat
     1321 gcgagatgaa ttacggaaag tagggtaatc aaatgaaatt tgatttatct ctatagatta
     1381 aacacaaaca taatgataga atggaaaaac agatatattc tggtgtatag gaatagtctg
     1441 gtttgacctt tttataaaag gttgtattta aacttatttc gattacacta tttaactctc
     1501 gcacttatgc gatattcact ataggaaaaa caaaatgagc attgaagaac gcgtaaaaaa
     1561 aatcattgtt gatcaacttg gcgcgaaagc agaagatgta aaaccagaag cttcattcat
     1621 tgaagattta ggtgcagatt ctttagacac tgttgaatta gtaatggctt tagaagaaga
     1681 attcgatatc gaaattccag atgaagaagc tgaaaaaatt actacagttc aatcagcaat
     1741 tgattacgtt caaaacaatc aataatctga attaat
//
LOCUS       DANLUT010000241         1735 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLUT010000241 DANLUT010000000
VERSION     DANLUT010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..773)
                     /locus_tag="PXB38_002475"
     CDS             complement(<1..773)
                     /locus_tag="PXB38_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5354715.1"
                     /translation="MFASAKEIRRDMANAVKAPRRMKVSDAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPCCSEYFEPS"
     gene            complement(773..1252)
                     /locus_tag="PXB38_002476"
     CDS             complement(773..1252)
                     /locus_tag="PXB38_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL5354716.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLTPSLGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPVDRKSFWQAENERLKYEEKTGELIPASEVAFEMG
                     AMAKAVVQTLETLPDILERDCGLQPKDLIRVQQVIDDVRDQMALHIQQAPTTEQGDD"
     gene            complement(1522..1671)
                     /locus_tag="PXB38_002477"
     CDS             complement(1522..1671)
                     /locus_tag="PXB38_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase"
                     /protein_id="HDL5354717.1"
                     /translation="MPCERTAFSGKTYGDTVDYLIKVMGERDLCASQIDRIREWQAQT
                     KQGFK"
BASE COUNT          434 a          434 c          403 g          464 t
ORIGIN      
        1 attgatggtt caaaatactc tgagcaacaa gggcattgcc agtaaaatcg acggcgatca
       61 ccgcgattgt ataggcttaa aatgcctgtt gttggtggag cctcgtgggt gcttttcggg
      121 atatgtttga gatcaacaat atctttaccg ggcgaactct ccaccaaagt cattcctgct
      181 gacataaagg tggtcgtccg ctttgaggca agggagaaac catcaccttc accgtccaca
      241 tcttcgggcc agcggtcgta gtcagtcaga gcaacatatt tgtagtccga tgaagaaagc
      301 acattgatag acggccagcc gattttgagc aagttgcccg ctcggaaata cttgtcgtgg
      361 acattgttat cgtttttgcg tgggcttagc cgcttggcaa tttcgggcga acagcggaat
      421 gtgcggtcaa gccgttttcg gctatgttcg ctggctttct cttgggtaag ttgcaccaac
      481 aggaaatcgg acggatcgca gataattgag taggttatcc agccgtcaat caagccgatg
      541 gttttacccg ttcgtgccgg cccgacaaaa atcaccgcat catattctcg gctgttgagg
      601 cagtccatcg gttctaacat ataggcggcg gtgtgtttat cccatttgac cgagtttcct
      661 ccgccaagtg gcacacgcat atattccgct acggcatcgg agactttcat tcggcgaggt
      721 gctttgacag cgttcgccat atcacggcgg atttctttgg cacttgcaaa cattagtcat
      781 ctccctgttc ggtcgttggg gcttgttgga tatggagagc catctgatct cgcacatcat
      841 caattacttg ttgcacccgg ataaggtctt tcggctgcaa tccacaatcc cgctccaaaa
      901 tatccggcaa ggtttcgagt gtttgcacta ctgcttttgc cattgcaccc atttcaaacg
      961 ccacttcgga ggctgggatt agctcgcctg ttttctcctc atatttgaga cgttcgtttt
     1021 ccgcttgcca aaatgacttg cgatcaaccg gagagaggct atcgacatcc gccgacatct
     1081 tttccgccaa cccggtgagg attaaatcac gcagcgcata gagctttaat ttgctgttac
     1141 tgccaagcga tggggtgagc cctgccactc gctgagatac tgtctggcgg tgcaatccgg
     1201 tgagttcggc gatctgattg atgttaagtt ttagatcaaa taagttatcc atttgctcaa
     1261 atcctaaaaa aatcaaaacc gcctaaaaaa acggcaacat cacaggaaga tgatgatgcc
     1321 tagaaaccca aaaaactgcc gaaaaccgcg ctgccgcaac cccgtggaaa ggggtatccc
     1381 ctcgggagta ccttttacaa actatgcaac acattgctta gttatgatct tgatacaatc
     1441 aaaagcataa ctaagtaatg taacgcaaat gaaaagggag caattaagct cccactctca
     1501 ttagcggttt aatccgccaa gttatttaaa cccttgctta gtctgtgctt gccactctct
     1561 aatacggtca atttgactcg cacacaaatc acgctctccc attactttaa tgagataatc
     1621 caccgtatcg ccgtaggttt taccgctaaa tgctgtccgc tcgcacggca caaggtaagc
     1681 cgcaggcgga tataaatact cagtgctgac gattgttttg ctagtgcaac cgctt
//
LOCUS       DANLUT010000242         1732 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLUT010000242 DANLUT010000000
VERSION     DANLUT010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            198..392
                     /locus_tag="PXB38_002478"
     CDS             198..392
                     /locus_tag="PXB38_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354718.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            520..1089
                     /locus_tag="PXB38_002479"
     CDS             520..1089
                     /locus_tag="PXB38_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL5354719.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            1079..1552
                     /locus_tag="PXB38_002480"
     CDS             1079..1552
                     /locus_tag="PXB38_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354720.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
BASE COUNT          548 a          255 c          404 g          525 t
ORIGIN      
        1 ttttcttagt cattcttact gttagatatg taggttattt attgatttat ccattagcat
       61 tctttgcagc agtcggtagt tttattgttt tctgtcaatg gacatatcaa gaatggcttt
      121 attattttaa gcgcggtttt gctccgattt agtgtgtgtt tattaattcc ctcgaattcg
      181 ggggaaggag aagtaagatg acaaaatttt ttgaaactat cgcattcgtg atgttatttg
      241 gcattattcc aagctgtttg ttggcgatta atactacttt aatgaatatg aatattaaaa
      301 acgcaccgtg gtttatggtg attattcagt taggttttaa tatcacttgt tattggttgt
      361 ggtttatttc tgttatgcgg aatgttattt aaggagatta ataagtgagc cagtgcaatg
      421 aactgactgt aattttaatc gccatcgcta ttcttagtgt atgtgccggt tcactctttt
      481 ttattgagtg gtttgataag agagatggtg agggttggaa tggctaacaa accacctaaa
      541 caacacaaat gcaaagagtg cggcagttat tacatcaaat ttcaaagcac gcagcaggtc
      601 tgctctgtta agtgtgctat ggcaatgggt aagcgtaaga cagaggcgaa acgcaaaaaa
      661 agtgcaaaaa tcgaccgctt ggagcaacgg aagcggctgg aaaaattgaa aagccgtaga
      721 gattttgaga aagatttaca aaagatattt aataaattca ttcgcttgcg tgataaagat
      781 ttaccctgta tttcctgtgg ccgctatcat caggggaaat atgatgcagg gcattataaa
      841 accgttggtg gtaatcctga gctacgtttt aatgaagata attgccacag tcaatgtgtg
      901 ccgtgtaacc gacatctgca cggcaatatt gtgaattatc gagtaaatct gattgagaaa
      961 atcgggcttg agcgtgtgga atttttagag cgtaaagacc acccaccatt aaaacttact
     1021 atcgaacaaa tcaaagattt aatcaaagtc tataaagcga agtgcaagga gcttgagcgt
     1081 gttacctaga aaaattaaaa acaagtggtt agagcctgaa aagcagaaat ggatcgaaga
     1141 gttgctaagg ttatgggggg cgtgggaatt tggcggattg gatttagaaa gtcgggtaaa
     1201 tatgatttac cggctgatga aatctgcgga gggggttaaa agtctttcat ctagagaggt
     1261 ttgtaacgat agcctcggca cgctgatcaa tgagattttt acggtagtca ccaaaagaga
     1321 cgtaatgtta gccgatatac tcaaacaaaa atactggttc gggcgttcgg agcggcaaat
     1381 cgctatttat tatcaactaa gggacagcga gggtagaaaa gaaagacgat ggcaagaaat
     1441 tattcaagat aaatgcaaaa aagcggaaag aattattgca gatattcttg aaagcaagat
     1501 ttcatccagt aattctacag ataaactgaa aaaatatcaa ttttcccctt gattttagtg
     1561 cgtaacaagt gtatattttg tgctaatggt ggacgtagta taaatgatgt ttaccaatgt
     1621 tagttaaaga cgcagcctga agtaatattc agttcggagg agaataacta gaaacgacgt
     1681 cgagtatagt tatttcagcg tttgcgtggc agtatgccga ccgaattagt tt
//
LOCUS       DANLUT010000243         1673 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLUT010000243 DANLUT010000000
VERSION     DANLUT010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..204
                     /locus_tag="PXB38_002481"
     CDS             <1..204
                     /locus_tag="PXB38_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5354721.1"
                     /translation="LGGVSQMLTKMPKAPTMGNETEKESSTAFSNLNNLVAQGKPVPL
                     AYGLIRTGSLVISQGVETMTVEV"
     gene            207..>1673
                     /locus_tag="PXB38_002482"
     CDS             207..>1673
                     /locus_tag="PXB38_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5354722.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTKIQNDDDSYNFNNVSGQLNVGTQDQEVLEGYDSSQNEVSVGVEVKKKNGA
                     IVRTVTDERISRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKYSSQ
                     YLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGI
                     SFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKIAWTNNPAWEIYDL
                     APILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYDLLN
                     DFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVSGFERSYSARKSRHNAVQVTY
                     SDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKET
                     ITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAING"
BASE COUNT          501 a          333 c          398 g          441 t
ORIGIN      
        1 ctaggaggag tttcccaaat gctcaccaaa atgccaaaag cccccacaat gggtaatgaa
       61 acagaaaaag aaagctcaac ggctttttca aatttaaata acttggtggc tcaaggcaaa
      121 cctgtgccgt tggcttatgg cttaattcgg accggctcgc ttgtgatttc acagggagtt
      181 gagacgatga ctgtagaggt ataattatgg gattatttag tcgtaagaga aaaaatcata
      241 ctcctaaaga agcaccggaa actggtcgct ctaaacagat tgtgaatatc gtggagttac
      301 tctgcgaggg tgaaattgaa ggcttggtag atggctttaa atcgatttat cttgacggca
      361 cgaaaatcca aaacgatgac gacagctata attttaataa tgtgagcggt cagttaaatg
      421 tcggtacgca agatcaagag gtattagaag gttacgacag ctcacaaaat gaagtgagtg
      481 tgggtgtaga agtcaagaaa aaaaacggtg caatcgtccg caccgttact gatgaacgca
      541 tcagccgttt gcgtttaacg ttgggcgtgc ggtcactatt ccatcaaaat aatcaaggcg
      601 ataccaatac caccaatgtt gatttaaaaa tcacgattgg cacacggcaa tattcgcata
      661 gctttaacgg caaatacagc tcgcaatacc ttgaatctgt ggtgtttgat aacctgccgc
      721 ctgtgccatt taatatctca gttgagcgtc taaccgagga tagcaattcg caacgcttac
      781 aaaacggtac aatttggagt agttacaccg aaattatcga taccgagttt acctacccta
      841 attcagcggt tgccggtatc agttttgatt cggagtattt taataatatc ccgacccgaa
      901 actacctaat taaagcgaaa aaagtcaaag tgccaagcaa ttatgatcca gttaaacgca
      961 cttacaccgg cttttgggac ggcacattta aaattgcgtg gacgaacaac cctgcttggg
     1021 aaatttacga tttagctccg attttaagca aaatgcttgg ggttgaaatc agttttgaca
     1081 aatgggcgtt gtatgatgtt gcccgctatt gcgatcaact tgtgccggac ggtatgggtg
     1141 gaatggagcc tcgtttcacc tgtaacgtat ggctcacgga agttaaaact gcctatgact
     1201 tgttgaatga tttctgctcg gtattccgtg cgattccgat ttggaccgga acagaagtat
     1261 cggtcattat cgaccgtccg cgtgatccgg tttggactta cacaaatgct aatgtagtca
     1321 gcggttttga acgctcttac tcagctcgca aatcacgcca taatgcagtg caagttactt
     1381 attcggataa aacaaatggc tatgaaagtg cgattgaata tgtctctgat gacgaggaaa
     1441 tcaaaaagca cggcttaaat ttaagtcaaa ttactgcttt cggttgtacc tctcgggggc
     1501 aagcacaccg taccggaaaa tggattttgg aaaccgaaaa acgggaaaag gaaaccatta
     1561 cttttaccgt gggacgtgag ggcttaatgc acttgccggg cgatattatt cgtgtggcag
     1621 acagccatta tgccggtacg gaaattggcg gacgtgtact ggcgattaat ggg
//
LOCUS       DANLUT010000244         1641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLUT010000244 DANLUT010000000
VERSION     DANLUT010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..142)
                     /locus_tag="PXB38_002483"
     CDS             complement(<1..142)
                     /locus_tag="PXB38_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Bacteria have multiple sigma factors which are
                     active under specific conditions; the sigma factor binds
                     with the catalytic core of RNA polymerase to produce the
                     holoenzyme and directs bacterial core RNA polymerase to
                     specific promoter elements to initiate transcription;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HDL5354723.1"
                     /translation="MIHNKISLDISSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAF
                     VNA"
     gene            312..1355
                     /gene="msrB"
                     /locus_tag="PXB38_002484"
     CDS             312..1355
                     /gene="msrB"
                     /locus_tag="PXB38_002484"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5354724.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDNSFNMTRTEVLSRSGNAHLGHVFTDGPKDKGGLRYCINSASIKFIPLEQMEKE
                     GYGYLINMIKGNK"
     gene            1385..>1641
                     /locus_tag="PXB38_002485"
     CDS             1385..>1641
                     /locus_tag="PXB38_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5354725.1"
                     /translation="MMLSLNSYAQENSHLGHIPLKDLNQNQITLDKYQGKKIYIKAWA
                     SWCSICLAGLAEIEEISQKANNDIEIITIVSPGHKGEKTTN"
BASE COUNT          628 a          273 c          281 g          459 t
ORIGIN      
        1 ttgcattaac gaatgcttct tgaaccatat cttcagcaag agcaatatct tgtaattgta
       61 actgagcaaa tttcaacatt tgctgacgaa tatcggcaag ctgttccgat gaaatatcta
      121 aagaaatctt gttatgaatc atagtgttat attgagaaaa ttttttgtga gaatattaaa
      181 caatattcga ctaatcctat agagagtaaa accaattttg atcttagcaa aaaagtaaga
      241 aattatgaat gtttaaggtt aaaccctcgt ccttaaaaaa taaaattaca taagttataa
      301 aggagaactg aatgaaatac aatcaactgt tactatgttt ggtgtctgct atctttacca
      361 cctcctcaat agcaaacatc acaaccccta acgagatgcg atctgaaaac ttacaggata
      421 tttacttggc aggaggatgt ttctggggca ttgaagccta tatggaaaaa atatatggcg
      481 taaaagaggc tacatcgggc tatgccaatg gcaaaactga gcaaactgct taccgaatta
      541 tcgggcaaac cgatcatgca gaaacagttc acgtgaccta tgatgctaat aaaatttctt
      601 tagaaaagct gttgcaatat tactttaaag taattgatcc aaccagtaaa aataaacaag
      661 gtaatgatat tggccgccaa tatcggacag gtatttatta tcagaatgag caagataaac
      721 aaattatttt aaaagaaata caagctcaac aagcaaaata caaacaaaaa atacaagtgc
      781 aagtagaacc attaaaacat tatattttgg cagaagagta tcatcaggat tacctaaaga
      841 aaaatccaaa tggctactgc catattgatt taaaccaagc caacagcatt attatcgatc
      901 cgaaagatta tcctaaacct agtgatgcaa cattaaaaat gaaattaacg cctttgcaat
      961 atagcgttac ccaacgtaaa aatactgagc gttcattcag caatgaatat tgggataata
     1021 ccgcaccggg catttatgtt gatataacta caggagagcc tcttttttca tctctcgata
     1081 aatatgactc cggctgtggc tggccaagtt ttaccaaacc aattatcaat gaggttgtta
     1141 actataccga agataatagt tttaatatga caagaacgga agtactaagt cgaagtggta
     1201 acgctcattt aggacacgtt ttcactgatg gcccgaaaga taaaggcgga ttacgttatt
     1261 gtatcaacag tgcctcaatc aaatttattc cattagagca aatggaaaaa gaaggttacg
     1321 gctatttaat aaatatgatt aaaggaaata aataatgatg aagaaaataa ttagtttact
     1381 cataatgatg ttgagtctta acagctatgc acaagaaaac tctcatcttg ggcatattcc
     1441 tcttaaagat ctcaatcaaa atcaaattac tcttgataaa tatcaaggta aaaaaatcta
     1501 tataaaagca tgggcatctt ggtgttctat ttgtctagcc ggattggcgg aaattgagga
     1561 aataagccaa aaagcaaata acgatattga aattattact attgtttcac cagggcataa
     1621 aggcgagaaa acaaccaatc a
//
LOCUS       DANLUT010000245         1607 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLUT010000245 DANLUT010000000
VERSION     DANLUT010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            11..277
                     /locus_tag="PXB38_002486"
     CDS             11..277
                     /locus_tag="PXB38_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5354726.1"
                     /translation="MNKITFTGKADKQLSKIDSRYILAIIEAIESLALFPNVEKDIKR
                     LQGYISRFRMRVGRYRVIFDWLEGEPRIIEIQTIAKRDERTYTH"
     gene            320..718
                     /locus_tag="PXB38_002487"
     CDS             320..718
                     /locus_tag="PXB38_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354727.1"
                     /translation="MKPYQTIKDTNGNDLFVLVPVAEFEQLTGDNLYDFPYDDETDDD
                     LVEVEYDKDEFDGVTIPFEVVKIKLEQNINNLGAWRIYRNLSQQEVAEKTGLSQSAIS
                     QAERKGNRPQKRTREKLAKIYGCTPEQLAG"
     gene            1115..>1607
                     /locus_tag="PXB38_002488"
     CDS             1115..>1607
                     /locus_tag="PXB38_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354728.1"
                     /translation="MLTQEFLSLSEASDFVKSKGLDLEECDLIFLASKKEFRVFNNIY
                     SIPRLNDSNPLYKVNGLKGVFELLLETQLLDVAERLTKALADSNIEVSEYSNGYHTVL
                     VLKNKQTKNEVEVLYAPYGEFQISELRYSYASVYFPVFDGLGKQFDIINGMVESRMLE
                     SLSE"
BASE COUNT          561 a          264 c          323 g          459 t
ORIGIN      
        1 gaaatcataa atgaataaaa ttacattcac agggaaagca gataaacagc tttcaaagat
       61 tgatagccga tatatactgg caattattga agcgattgaa agcctagcat tatttcctaa
      121 cgtagaaaaa gacattaaaa ggctacaagg ttatatcagc aggtttagaa tgcgtgtggg
      181 gcggtataga gtgatttttg actggctgga gggcgagcca agaattattg aaattcagac
      241 tatcgccaaa cgagacgaga gaacatatac acactaaaga caaggggcag aaatgcccca
      301 aacagcacgg agaaacgaga tgaaaccata tcaaaccatt aaagacacta acggcaacga
      361 tttatttgta cttgtgccgg tggcggaatt tgaacagcta acaggggaca atttatatga
      421 tttcccctat gatgatgaaa ccgatgatga tttagttgaa gtggaatatg acaaagatga
      481 atttgatggt gtaactattc cttttgaggt ggttaaaatc aagctggaac agaatataaa
      541 caacttagga gcgtggcgga tttaccgcaa tttatcacaa caagaagtgg cagaaaaaac
      601 agggctttca cagtccgcta tttcacaagc agaacgcaaa ggcaaccgcc cacaaaaacg
      661 tacaagggaa aaattagcta aaatttacgg ttgcacacct gaacagttag caggttagga
      721 cctgtcaaaa cctcacattc aaatagccgt tgattgatat taacggcttt tttattgctt
      781 aattctgtac caattacgca ccgattgcgg atcaatacgg ggcaagtttt cgcaaaatct
      841 taatgaaaaa tgaccgcttg aatgcccttt tttatagcgt tcagaaacct accgttagcc
      901 tattttaaat cactgtaata aaacacagtt tattatttgt aatttatctg aataattggc
      961 aaaatacagc ctataaagtt caattcgtaa ctatacggat ttattcaaat tagtgtggat
     1021 agtggcggag tagctaccaa aacgaaagga gaaagccctt tatttctctt tccacgctct
     1081 cacagtaaag ggcagcgtta aaggggcgtt atgtatgctt actcaagaat ttttatcact
     1141 ttcggaagct agtgattttg ttaaatctaa aggattagat ctagaagaat gtgatttaat
     1201 ttttctagct tcaaaaaaag aatttagagt attcaataat atatattcaa ttcctagatt
     1261 aaatgacagc aatcctcttt ataaagtcaa tggattaaaa ggagtttttg agttacttct
     1321 agaaacacaa ttattagatg tggctgaacg tcttacaaaa gccctagcag atagcaatat
     1381 tgaggtttca gagtattcga acggctatca cacggtattg gtacttaaaa ataaacaaac
     1441 aaagaatgaa gtcgaagttt tatatgctcc ttatggcgag tttcagatta gtgaattacg
     1501 ttattcttat gcgtctgttt attttccagt attcgacggg ttaggaaagc aatttgatat
     1561 tattaatggt atggttgaaa gccgaatgtt agaatctcta tccgaga
//
LOCUS       DANLUT010000246         1602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLUT010000246 DANLUT010000000
VERSION     DANLUT010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            20..1300
                     /locus_tag="PXB38_002489"
     CDS             20..1300
                     /locus_tag="PXB38_002489"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL5354729.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCQSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLEE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(1373..1543)
                     /locus_tag="PXB38_002490"
     CDS             complement(1373..1543)
                     /locus_tag="PXB38_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit R"
                     /protein_id="HDL5354730.1"
                     /translation="MEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVKSDENG
                     QDVRTQLLNKLA"
BASE COUNT          485 a          360 c          296 g          461 t
ORIGIN      
        1 aaataaatag gagtaagcta tgtcaaaagc aacattaaca ctcgaaacag gtgaaaaact
       61 tgaactcaat atgcaaaaag gaaccttagg gtatcaaacg attgatattc agcctttctt
      121 aaagcataag ttatttgctt atgatcccgg attggtttcg accgctgtat gccaatccaa
      181 tatcacttat gttgatggcg atgaaggggt tttactctat cgaggctacc cgattgacca
      241 attagccaaa cattctgatt acttagaagt cggttatatg ctgttattcg gcgaacgccc
      301 taccaaagaa gaatacaaag acttcgttca actcatcaaa aaacacactc ttgtacacga
      361 acaactaacc aaattcttct ccggtttccg ccgagattcg cacccaatgg cggtgatgtg
      421 tggggtaagt ggagctttgg ctgccttcta ccacgacgcc attgatgtaa acaaccaagc
      481 ccaccgtgaa ttaaccgcca ttcgtttgtt agccaaaatc ccaacccttg cggcgatgtg
      541 ttataaatac tctatcggtc agccgtttat gttcccacaa aaccacttat cttacgccgg
      601 aaacttctta tatatgatgt ttgccactcc ttgtgaaccg tacgaagtga accctgtgtt
      661 agagcgtgcg ttagaccgaa ttttcatttt acatgcagac cacgaacaaa acgcttcgac
      721 ctcaaccgtg cgaaccgccg cttcatcagg tgcaaaccca tttgcttgca ttgctgccgg
      781 tattgcctct ctctggggac ctgcacacgg aggagcaaat gaagcctgta tcaatatgtt
      841 ggaagaaatc ggcactgtgg atcgtattcc tgaatttatt gctcgagcca aagataaaaa
      901 tgacccgttc cgcttaatgg gctttgggca tcgtgtctat aaaaactacg accctcgtgc
      961 gaaagtaatg cgtgaaacct gccacgaagt gttaaaagaa ctgaacattg ataacccact
     1021 atttgaagtg gcattggaat tagagcgtat tgcgttaagc gacccttatt tcattgagca
     1081 taaactttat ccaaacgtag atttctactc cggaatcgtg ctaaaagcca tcggtattcc
     1141 aacctcaatg tttaccgtaa tgtttgccct agccagaacc gttggctgga ttgctcactg
     1201 gaaagagatg tatctccaag gcaatatcaa aatcgttcgt ccacgtcaaa tctacaccgg
     1261 acatactaaa cgtgattttg agccaatgga taaatcataa gattagcaaa aaatcgaaaa
     1321 attttaaccg cttgtggaaa caagcggtta tatttttcat aaaatttgca aatcaggcta
     1381 atttatttag cagttgtgtt ctaacatctt gaccattttc atcgcttttt acagccataa
     1441 taaataagcc ttttccttga cttaatttct cccaaagatt gccaattaag gctttttctt
     1501 tagaatcttc attacttttt aattgttccc ctttatattc cacaattaaa attcgaccat
     1561 caataagctc tacaataaaa tcagggtaaa aattctgatg ag
//
LOCUS       DANLUT010000247         1552 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLUT010000247 DANLUT010000000
VERSION     DANLUT010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1552
                     /locus_tag="PXB38_002491"
     CDS             <1..>1552
                     /locus_tag="PXB38_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5354731.1"
                     /translation="LNIAIGNFTVKSPEMVIAANNIANALGGVAGEAMRAAILVANLS
                     SMKLDANGAAIIDPKHLEKIEQIERNNAIASAKGKDKIALQVKDALIKSGMKEGDAGY
                     ERLKAAYEQQFTLQNAPKRGGKPKKTKAERSAESYQNQVAEMTNRLSGLKIDKEDLVK
                     YGGISQYQEVRKLTEDIALNAEKYKNYGTEGVAKLKELAAKIDSEQQLLDIEQFQVDH
                     DKKLEAMQFELDLLGKTRTEKELLQFNNQLDLEAERLKINMTKENIALLDQKIAKIKE
                     EYELHQKKQEETRASVMMGIKEGWNNIETDVSNVAANVANITQNTFDGMADSLTNFVM
                     TGKADFRSFANSILSDLSKMIIKMMLFNAIKQGATMLFGYQGPTTTVNGNAVYGLGTW
                     ATGGYTGNGGKYTPAGIVHKGEYVITKEATSRLGLDYLNYLNYGRRGFASGGGVAVPR
                     VPSSSYQPKSAQSSISVQVINNGEPVDAKVSQKQQGEQTQITVELMRKIARQEANGMI
                     QNNFRAGGV"
BASE COUNT          523 a          285 c          361 g          383 t
ORIGIN      
        1 gcttaaatat tgctatcggt aattttaccg tcaaatcacc ggagatggtt attgccgcta
       61 ataacattgc taatgctctt ggtggcgttg ccggagaggc tatgagagcg gctattctag
      121 tcgctaatct gtcaagtatg aagctggatg ctaacggtgc tgcaattatc gatcctaaac
      181 atcttgaaaa aatcgagcaa attgaacgta acaatgcgat tgcttcggct aaaggcaaag
      241 ataaaatcgc attgcaagta aaagacgctc tgattaaatc aggtatgaaa gagggcgatg
      301 ccggatacga gcgactaaaa gcagcatatg agcaacaatt tacgttgcaa aatgccccta
      361 agcgcggcgg aaaaccgaag aaaaccaaag ccgaacgctc tgccgaaagt taccaaaacc
      421 aagtagcgga gatgaccaat cgtttatccg gcttaaagat agataaagaa gatctcgtaa
      481 aatatggtgg catttctcaa tatcaggaag tgcgtaaact tactgaagat attgctctga
      541 atgctgaaaa atataaaaac tacggcactg aaggcgtggc taaactcaaa gagctggctg
      601 ctaaaattga ttctgaacaa cagcttttag acattgagca attccaagtc gatcacgata
      661 aaaagctaga ggcaatgcaa ttcgagctgg atttactggg aaaaactcgt actgaaaaag
      721 aattgttaca atttaacaat caattagatt tagaggccga gcggctgaaa attaatatga
      781 cgaaagagaa tattgctctt ttagatcaga aaattgccaa aattaaggaa gaatacgagc
      841 tacatcagaa aaagcaggaa gaaactcgtg cttctgtaat gatgggaata aaagaaggct
      901 ggaacaatat tgaaaccgat gtcagcaatg tggcggcaaa tgttgccaat attactcaaa
      961 atacctttga cggtatggcg gatagcttga ctaattttgt gatgacgggt aaagcggatt
     1021 ttcgtagttt tgctaattcc atattatctg atcttagcaa aatgattatc aaaatgatgt
     1081 tatttaatgc tatcaaacaa ggtgcaacta tgttgtttgg ctaccaagga ccgactacaa
     1141 cggtaaatgg taatgctgtt tatggattag gtacttgggc aacaggtggc tacacaggca
     1201 atggcggcaa atacacccca gcgggtatcg tccacaaagg ggaatacgtc atcaccaaag
     1261 aggcaacctc tcgtcttggt ttggattatt tgaattatct taactatggc agacgtggtt
     1321 ttgcctctgg cggtggtgtc gctgtaccaa gagtaccgtc atcatcttat cagccgaaat
     1381 cggctcaaag tagtatcagc gtacaggtca tcaataatgg tgagccggta gatgccaaag
     1441 tcagccaaaa acagcaaggc gagcaaacgc aaattactgt tgagttaatg cgtaaaattg
     1501 cccgtcagga agcgaacgga atgattcaga acaactttag agccggagga gt
//
LOCUS       DANLUT010000248         1531 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLUT010000248 DANLUT010000000
VERSION     DANLUT010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            15..1460
                     /gene="aldA"
                     /locus_tag="PXB38_002492"
     CDS             15..1460
                     /gene="aldA"
                     /locus_tag="PXB38_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL5354732.1"
                     /translation="MMKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
BASE COUNT          470 a          294 c          357 g          410 t
ORIGIN      
        1 aaaaggagca actcatgatg aaacaacata aaatgtatat taatggtgaa tttgtgcctg
       61 cgttagatgg tcgcacttta gcagtctata accctgccac cgaaaaagct atctccgaag
      121 tccctcgtgg cggagctgat gatgccaaaa tcgctatcga tgctgctgaa gccgcccaag
      181 aagcttggga acgtttacca gcgattgaac gaggaaaata tttacgtcaa attgctgtgg
      241 ggattcgtga gcgtgccgat gaaattgctc gcactatttc cgaagaaatg ggtaaaactc
      301 tgtccttagc aaccgttgag gtacatttta ccgctgacta cttagactat atggcagaat
      361 gggcgagacg ttatgaaggg gaaattatcc aaagtgatcg cccaaatgaa catattttcc
      421 tatacaaaaa agcgattggc gtcaccaccg gcattttacc ttggaacttc ccgttcttcc
      481 tcattgcccg taaagcggct ccggcattag taacaggtaa tactattgtg attaaaccga
      541 gtgaagatgc acctaataat gcgattctct tttcggaaat cgtgcatcaa gtcggtttac
      601 ctaagggggt atttaatgtc gtcaccggct atggcaatga agtcgggccg gaactttcag
      661 gcaatgaaaa aatcggtatg gtttccttta ccggtagcca gtttgccgga caaaaagtga
      721 tggaagccgc cagcaagaat atcattaaag tcaatttgga attgggcgga aaagcaccgg
      781 ctatcgtatt agacgatgca gatcttgagc ttgctgctac cgctgtagta aattctcgaa
      841 tcatcaattc aggacaggtt tgtaactgtg cagaacgcat ttatgtacag agttcaatta
      901 aagagcaatt tgtccaaaaa ttggtagaga aaatgcaagc ggtgaaatat ggtaatccat
      961 tagaacaaca agacattgat atggggccga tggtaaatga aaaaggcttg cataaagtgc
     1021 aggaaatggt gacacacgca ctgcatcaag gaggtaatct ggtattaggt ggtaacgtgg
     1081 ttgaaggaac aggctactac tttgagccaa ctattatcga caatgtagat aactctatgg
     1141 atattatgcg tcacgaaatt tttggtccgg tcattccggt tgcgacattt gataccattg
     1201 atgaagcgat tcgcttagcc aatgattgtg aatatggctt aacctcttcg gtttacacgc
     1261 aaaatatcaa taaagcgatg aaagtaattt cccgcttaaa attcggagaa acttatgtaa
     1321 accgtgaaaa ctttgaagca atgcaaggct accacgccgg ttggcgtaaa tcgggtattg
     1381 gcggtgctga cggtaagcac ggcttagagg aatacctaca aactcaggtg gtttatctgc
     1441 aatttgatga taaagtatag attcttctaa aaactcccac ttatcaaaat aagcgggagt
     1501 tttcttttag gttaaccttg tatcaaaatt g
//
LOCUS       DANLUT010000249         1515 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLUT010000249 DANLUT010000000
VERSION     DANLUT010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1515
                     /locus_tag="PXB38_002493"
     CDS             <1..>1515
                     /locus_tag="PXB38_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5354733.1"
                     /translation="YVLIGFRQTSTEQFVEFYSVKLEKGNVATDWTPAPEDVDSAVSA
                     VSADLTSYKQTQAATDSAQAQQLNQLSVNLTKAETNFNAKITEEKKARVDADKANAER
                     LTDITSRVANAESTITNFQSTKANKSEVASLAQSSLQAVWKADTQSAIGELAVGGRNL
                     LLKSNATNLINFVRSSQDVLDNTDFKTPVVRINCIQDSWFGRKTAITSGKLLAGKYTL
                     SFKYRTNATINNTFIGYGGNQRRRLITSNVVGNETWQTCKLTFETTEDYPDIFIIIGG
                     YGKADVSYIEFAELKLEKGAIATDWTPAPEDVESSVSAVSAKVDSVQQTLANADSALS
                     SRIDTVNASVGSNSSKITQVSNAVASVDGKLSATHTIKTETIAGGRKAIAGIAFGATA
                     DNRNAESSVIVMADKFEVVKNAQDGTPVRLFGVVENKVAINGNLIATGSISGDHINAN
                     SVRTAVLTAGAIKTEHLAAGQISADKLAIGLGGNLLVNPIFATPDLSIAPFGWNY"
BASE COUNT          486 a          300 c          352 g          377 t
ORIGIN      
        1 tatgtcttaa tcggttttcg gcaaaccagc acagagcagt ttgttgagtt ttacagcgtc
       61 aaacttgaaa aaggcaacgt agccacagac tggacgccag cacctgaaga tgtggacagt
      121 gcggttagtg ctgtttcggc tgatttaacg agttataaac aaactcaagc ggctaccgat
      181 tcagcacaag cacagcaact taatcagtta tctgtgaact tgaccaaagc agagactaat
      241 ttcaacgcca aaatcacgga agaaaaaaaa gctcgtgttg atgcagataa agcgaatgca
      301 gagaggctca cagacataac aagccgtgtt gcaaatgcgg aatcaactat taccaatttc
      361 caatcaacca aagcgaataa aagtgaggtt gcgagccttg cacaaagttc gttgcaggca
      421 gtttggaagg cagatacaca atcagcgatt ggcgagttgg ctgtcggtgg aagaaattta
      481 ttattaaaat ccaacgcaac aaacttaatc aattttgtca gatcatctca agatgtatta
      541 gataacactg atttcaaaac tccagtagta cgaatcaact gtatacaaga tagttggttt
      601 ggtcgaaaaa cagcgattac atcgggaaaa ttgcttgctg gtaaatacac tctatcgttt
      661 aagtatcgca ccaacgctac aattaataat acttttattg gttatggagg caatcagcgc
      721 agacggctta tcacatcaaa tgttgtcggt aatgagacat ggcaaacttg caagctcaca
      781 tttgagacaa ccgaggatta ccctgatata tttatcatta ttggtggtta tggtaaggcg
      841 gatgtaagtt atattgaatt tgccgagctg aaactagaga aaggcgctat cgctacagat
      901 tggacaccag caccggaaga tgtggaaagt tctgtaagtg cagtatctgc aaaagtagat
      961 tcggttcaac aaacgctggc aaatgcagat tcagcactaa gctctcgcat tgatacggtc
     1021 aatgcctcag tcggatcaaa ctcatctaaa attacccaag tcagcaatgc ggtagcaagt
     1081 gtggacggca aattatctgc tacccatacc atcaaaaccg aaaccattgc cggtggacgc
     1141 aaagcgattg ccggtattgc atttggtgca acggcagata accgtaatgc ggaatcttct
     1201 gtgattgtga tggcagataa atttgaggtc gtgaaaaacg cccaagacgg cacgccagta
     1261 agactatttg gcgtggtaga aaataaagta gcgattaatg ggaatttaat cgcaacaggc
     1321 tcgatttcag gagaccacat caatgcaaat tccgtcagaa ctgctgtatt gactgcagga
     1381 gcgattaaaa cggagcattt ggcagcaggg caaatatcgg cggataagtt agcgattggg
     1441 ctaggtggga atttgctggt taatcctatt tttgcaacac ccgatttgtc aatagctccg
     1501 tttggctgga actac
//
LOCUS       DANLUT010000250         1489 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLUT010000250 DANLUT010000000
VERSION     DANLUT010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..79)
                     /locus_tag="PXB38_002494"
     CDS             complement(<1..79)
                     /locus_tag="PXB38_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HDL5354734.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTART"
     gene            complement(136..465)
                     /gene="trxA"
                     /locus_tag="PXB38_002495"
     CDS             complement(136..465)
                     /gene="trxA"
                     /locus_tag="PXB38_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018357021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL5354735.1"
                     /translation="MSNVIHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDD
                     LSVDAQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMA
                     EFIKQAL"
     gene            complement(712..1377)
                     /locus_tag="PXB38_002496"
                     /pseudo
     CDS             complement(712..1377)
                     /locus_tag="PXB38_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
BASE COUNT          470 a          292 c          265 g          462 t
ORIGIN      
        1 ctgttcgggc tgttacccct gcaacaaact gctcaatgag tttgttttgt ttgtactgac
       61 ttagacgact ttttctcatt tgggtatctt aacctaaatg gagtttttag tcgttatcta
      121 ggacagcccc ttaaattata atgcttgttt gataaattca gccatttgtg cgtgcggaat
      181 tgcaccaact tgctgggcaa tcacttcacc atttttgaat aatagtaaaa atggaatgct
      241 gcgtacgcca aattgtgctg gtacagatgg attttcatct acgttcattt tgacaatttt
      301 tactttacca tcaaattgtg catcaacaga taaatcgtca agtacggggc cgatcatacg
      361 gcaaggacca caccaaggcg cccagaagtc taataatacc ggtacatctg attttaaaac
      421 atcttgttca aatgtagcat ctgttgtatg aatgacattg ctcataagtt tatccttaaa
      481 tattaaatta aaaaaagaaa cgccctaact ggcaagttaa ggcgaacagt tgtgtataag
      541 atagagatta atctataaaa tttcaagcaa gatttaccaa ttacaccaat aaatatttgc
      601 atagtgagat tttattatct cttcaattaa aagtagaaac gggctatatc taaacaactg
      661 caacaaaaag ggctaatcac taagattagc ccaactcgtt ctcaacaata attagaactt
      721 cacaccgaaa ccggcaaata ggacaaccgg atcaagtttt acttttactt cgtgttgcat
      781 atcattagtt acgcttggcg ttttgaattt cgccgtggtt ttgatacggg tgtaccacgc
      841 tgaggcgttg aaatagatgt tatcggttaa tttcacatca acaccgagat tcgccaccgg
      901 tccgaaagag tgttttttca catttaaatc cgttaccgct gcatgtactg attttgcgtg
      961 gtaaaaacgg gtatagttca gacccgcacc gatataaggt ttcactttag cggttggttc
     1021 aaagaaatag tattgagcat aaaggctcgg tggtaattgt cttaagctca caacacgacc
     1081 taaattcgca tttgcaccta atgccggcac aatcgcattg atttaatgcg agaatggcgt
     1141 tgcacctaat aattcgatac ccacattatc cgccaacata taagtggccg ttaaacctaa
     1201 ctgggtgttg ttttttactt ttaaatcaat atcaaccgca gttttcgtat ctgaacttga
     1261 atttgcctta acatgcacag caccggcacg gaatatcaca tcaccagctt gatgtgccat
     1321 cgcagttcca gttaataatg ccccacctaa aataattgct aaagttgatt ttttcatttt
     1381 catatcctca aaaataatta gaatacctat aatgaggtaa actttagcag agtgtaaatg
     1441 aaatgaaata gaaatgaatt gatatttatc aaacttttaa cacaaagat
//
LOCUS       DANLUT010000251         1477 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLUT010000251 DANLUT010000000
VERSION     DANLUT010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1477
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..703
                     /gene="purU"
                     /locus_tag="PXB38_002497"
     CDS             <1..703
                     /gene="purU"
                     /locus_tag="PXB38_002497"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL5354736.1"
                     /translation="FFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILV
                     TKEAHCLGDLLMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHD
                     KLLAEKIDEYSPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYE
                     RGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELV
                     LADKVFVYKNKTIIL"
     gene            complement(740..1423)
                     /locus_tag="PXB38_002498"
     CDS             complement(740..1423)
                     /locus_tag="PXB38_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5354737.1"
                     /translation="MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLLVDS
                     LTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVN
                     QLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFDSIIRAKKVYKLPPF
                     TIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEP
                     ESLEDIRSK"
BASE COUNT          469 a          283 c          248 g          477 t
ORIGIN      
        1 tttttttatg cgtaccgaat taaacggaat ttttaatgat gaaaccttac tcactgattt
       61 aaaatttacc ttacctgaag gctcaagcta taaattactc cctaaacaaa gaaaacgtat
      121 cgttatttta gttaccaaag aagcacattg tttaggtgac ttactgatga aaaattacta
      181 tggtggatta gatgtagaaa ttgctgccgt gattggaaac cacgaaacat taaaaagttt
      241 agttgaacgt ttcgatattc cattccattt agtcagccac gaaaatttaa cccgagtgga
      301 acacgataaa ttattagcgg aaaaaattga tgaatattca cctgattata ttgtgttggc
      361 taaatatatg cgggtgctga atccggaatt tgtcgctcgt tatccaaacc gagttgtcaa
      421 tattcaccac tcgttcttac ccgctttcat tggtgcaaaa ccttatcatc gtgcatacga
      481 acgtggtgtg aaaattatcg gtgcaaccgc ccattttgtg aatgatgaat tagatgaagg
      541 cccgattatt atgcaaaatg tgattaatgt tgatcacacc tacaccgcag aggctatgat
      601 gcgtgccgga cgtgatgtcg agaaaaccgt acttagccaa gccttagaat tagtgcttgc
      661 tgacaaagta tttgtatata aaaacaaaac cattatttta taagcaaaat agccggtcaa
      721 cattatctga ccggctatct catttagaac ggatatcttc caatgattca ggctctttac
      781 ctatcaacaa actaaaaacc attgccgatc tggctaaaat ttcccgcatt cgtacctgat
      841 aagccccctc tggatatgta gcggcataac aaattgcatc aatatcccta aattttgcaa
      901 taaacaatgc cctttcacag tggaattttt gggagataat cgtaaatggc ggtaatttat
      961 atactttttt agccctaatt attgaatcaa aagtggtata ccccgcataa tcctgcttaa
     1021 tttttgaagt cgcaatcccc attttaagta gatcacttgt cattgttttt ggctcattat
     1081 agtacggcgt tttattatct ccacttaaca aaagctgatt gacctttcct tcttggacta
     1141 attgcttagc ggcttccaaa cgatatttat aatattggtt aatcacatct ttagagtaaa
     1201 attttgccgt accgagtaca actgcatact cccggtaagg aatctgttta ctatctgtat
     1261 aaattttatc cctcacaata taacttgtaa gtgaatcaac caataataat atagctattc
     1321 ccaataaggg gaaaattgca attattttca atgccttaat aataaactgc tgcattttat
     1381 ggaaaagtgg caatttttct aacctatcac gcgtttggtt caaatgagat cctttacttt
     1441 tgctacccta tttaagatgg gtaaattaga gacaaac
//
LOCUS       DANLUT010000252         1432 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.253, whole genome shotgun sequence.
ACCESSION   DANLUT010000252 DANLUT010000000
VERSION     DANLUT010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1432
                     /locus_tag="PXB38_002499"
     CDS             <1..>1432
                     /locus_tag="PXB38_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDL5354738.1"
                     /translation="KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMAS
                     VIAMAGSEIIMPENAMMMIHKPWGIQGGDADDMRKYADLLDKVESTLVTAYSSKTGKS
                     TDELAEMLKEETWLNARECIELGFADKLANPLVAMASIQSKKLEDYTKMPNEIKAMLF
                     TPQGNAGAATPTPEQPQPPAQAVENPQNVTKPDAMAVLAQRNAAIKATFAAFGTQFDG
                     LLAECLADVSMTAEQAKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAG
                     QDTDKTNARDNAYNAMTLRELARASLVDRGVGISGYTPMQMVGLAFTHSSSDFGQILI
                     DVAHKSLIKGWETATENYEQFTTRGILTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTI
                     GDEGAQVALATYGQLFSITRQAIINDDMHLLTKIPEKMGQAAKATIAKLVFALITGNA
                     VAQDGKKLFDSSHKNTLANAKLDVEH"
BASE COUNT          419 a          335 c          360 g          318 t
ORIGIN      
        1 taaaacaaat caatctgcat atccactcgc ccggtggtga tgtgtttgac ggcattgcca
       61 tttacaacct gctaaaaaat caccctgcta acaagaccgt ctatattgac ggtcttgctg
      121 catctatggc tagcgtaatt gcaatggcag gcagcgaaat cattatgcca gaaaacgcta
      181 tgatgatgat ccacaaaccg tggggcattc aaggcggcga tgccgatgat atgcggaaat
      241 atgcggattt gcttgataaa gtggaaagca cgctagttac ggcgtacagc tcgaaaactg
      301 gtaaatctac cgatgaatta gcagaaatgc tgaaagaaga gacttggctt aatgcccgtg
      361 agtgcattga gttgggtttt gctgataaac tcgccaatcc ccttgtggcg atggcgtcta
      421 ttcaatctaa aaaattagag gactatacaa aaatgccaaa cgaaatcaaa gcaatgttat
      481 ttacgccaca aggcaatgcg ggggctgcaa ccccaactcc tgaacaaccc caacccccag
      541 cgcaagcggt cgaaaatcca caaaatgtga caaaacccga tgcgatggcg gtattagctc
      601 aacgtaatgc ggcgatcaaa gcgacctttg ccgctttcgg cacacaattt gacggcttgc
      661 tggcagaatg tttagctgat gtgtcaatga ccgctgagca agccaaagac aagctccttg
      721 ccaaactggg cgaaaacacc accccaagcg taccgcaaaa ccacattcac gcaggtaacg
      781 gtaacatcgt tggcgacagc gtgaagcagt cgttaatggc tcgtgctggt caagataccg
      841 acaaaaccaa cgcaagagat aatgcctaca atgcaatgac cttgcgtgaa ttggctcgtg
      901 cctcattggt cgatcgtggc gtggggatta gcggttatac gccaatgcag atggtcggtc
      961 ttgcctttac ccattcgagt tcggactttg ggcaaattct gattgatgtg gcgcacaaat
     1021 ccttgattaa gggctgggaa acggcgacag agaattacga gcagtttacc actcgtggca
     1081 ttctgactga cttccgaccg gcaaaacggg ttggattggg tgagtttggt tacctgccgg
     1141 aagtgggcga aggggaagaa tatacctacg gcaccatcgg cgatgaaggg gcgcaagtgg
     1201 cattggcgac ctacgggcaa ttatttagca ttacccgtca ggcgatcatc aatgacgata
     1261 tgcacctttt aaccaaaatc ccggaaaaaa tggggcaagc ggcaaaagcc actatcgcca
     1321 aattggtgtt tgccttaatc accggcaacg ctgtcgccca agacggaaaa aaactgtttg
     1381 atagcagcca taaaaatacg cttgcgaatg cgaagttaga tgttgagcat at
//
LOCUS       DANLUT010000253         1385 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.254, whole genome shotgun sequence.
ACCESSION   DANLUT010000253 DANLUT010000000
VERSION     DANLUT010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..310
                     /locus_tag="PXB38_002500"
     CDS             <1..310
                     /locus_tag="PXB38_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HDL5354739.1"
                     /translation="VWYECYSSSPRDGGVRQTVINLDDGKWDLIELPNVHEQQIKAYF
                     AGTKGKPYDWRGVFGIVLGIKQKRDKYFCSEWCFNLIKQSDEGWRFSPNQLVAIFKKG
                     "
     gene            431..1219
                     /locus_tag="PXB38_002501"
     CDS             431..1219
                     /locus_tag="PXB38_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354740.1"
                     /translation="MFLSHFKQVLNANIEADGKDWTIIDVFGGSGLLAHTAKREKPLA
                     RVIYNDFDNYAERLNHIKDTNQLRQEIYQIVDGVIPKNKRISNEVKAKIINKINDFEG
                     FKDPKCLSSWLLFSGEQVATLDELFKHDFWNCVRQSNYPEATGYLDDIEVVSESFHQL
                     LPRFHDKEKVLLILDPPYLCTRQESYKQANYFDLIDFLRLIDLTKPPYIFFSSTKSEF
                     IRFIHYMVQNKKENWQAFEGAERIVVNASPSYNGKYEDNMVFKF"
BASE COUNT          447 a          224 c          295 g          419 t
ORIGIN      
        1 agtgtggtat gagtgctaca gctccagtcc tcgtgacggt ggagtaagac aaactgtgat
       61 taaccttgac gatggcaaat gggatttaat tgagctgcca aacgtacacg agcaacaaat
      121 taaagcctat ttcgccggca caaaaggcaa gccttatgac tggcgaggcg tgtttgggat
      181 tgtattgggg attaaacaaa agcgggataa gtacttttgt tcggagtggt gctttaactt
      241 aattaagcaa agcgatgagg gatggagatt tagccctaat cagttggttg caattttcaa
      301 aaaaggataa aaaatgcaga aagctttaac cgcattagct gttgctgcga tggcatcgca
      361 agtacaaact aaacagcaag caaatgtaat atttaaacaa gctccgctac cttttatcgg
      421 tcaaaagcgg atgtttttat cccatttcaa acaggtgtta aatgcaaata ttgaagcaga
      481 cgggaaagat tggactatta tagatgtttt tggtgggagt gggttgcttg cacatactgc
      541 aaagcgtgaa aaaccgttag caagagtgat ttataatgat tttgataatt acgccgaacg
      601 gctaaaccat atcaaagaca ctaaccaact ccgccaagaa atctaccaaa ttgttgatgg
      661 agttatacca aaaaataaga gaattagcaa tgaagttaaa gctaaaatca tcaataaaat
      721 caatgatttt gaggggttta aagaccccaa atgcttaagt tcttggttgt tatttagtgg
      781 tgagcaagtt gctactttag atgagttatt taagcacgat ttctggaatt gtgtgcggca
      841 aagtaactat cctgaagcaa cgggttatct tgatgatatt gaggtggtta gtgagtcctt
      901 tcatcaatta ttgccgaggt ttcacgacaa agagaaagta ttattgattc ttgacccgcc
      961 ttatctttgc acaagacagg agagttataa gcaggcaaat tactttgatt taattgattt
     1021 cctacgattg atagacctta ccaaaccgcc ttatatcttc tttagctcaa ccaagagcga
     1081 gtttattcgc tttattcact atatggttca aaacaaaaaa gaaaactggc aagcgtttga
     1141 gggggctgaa agaatagtag taaatgcctc gccaagttat aacggcaaat atgaggataa
     1201 tatggttttt aagttctaaa aatttaaacg cccttaatta tggtttaaag ggcgtttgtt
     1261 tttgcgattt attttgcata gtttttaatt tttatctatg caaaattgag tgtaattcta
     1321 tgcaaaataa ttcgaccgct tacaagacca cctgttttta gttacccccg ttatttttga
     1381 aatgt
//
LOCUS       DANLUT010000254         1331 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.255, whole genome shotgun sequence.
ACCESSION   DANLUT010000254 DANLUT010000000
VERSION     DANLUT010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            52..1230
                     /locus_tag="PXB38_002502"
     CDS             52..1230
                     /locus_tag="PXB38_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5354741.1"
                     /translation="MSNNNAKNSNLSNAKKAKSDEFYTQYHDIEKEMNAYLDFDPDVF
                     RGKTILLPCDDPEWSNFTLYFAQNFARLGLKKLISTSFAHSSKPLNIPYQPSLFESED
                     SQFNALISPLKGKIFTLDKDLNNDGKIDHHDLAWKYLKSDGDFRSDEIKALRDEADII
                     ITNPPFSLFREFITWIMEADKKFAIIGNMNAITYKEVFPLIKDDKIWLGKGFTRSCAH
                     FFSPYESDSEYLELDRFEKLGIAVPKGLFVTRVASIHWFTNIEHGRRHQPLQLMTMTD
                     NLKFNKKLDGKNAYQQYDNYNAIEVPETKAIPSDFDGVMGVPISFLDKYCPEQFEILG
                     ATQRGCHDEVPDTKKYDDYWEMKQNGEKTGSGGGKTNENANLATNDGKKIICRRSDLI
                     "
BASE COUNT          470 a          227 c          249 g          385 t
ORIGIN      
        1 taacctcttt attccaactc gccaactctt tttttaactt gggaggttgg aatgtcgaat
       61 aataatgcta aaaatagcaa tctttctaac gctaaaaaag ccaaaagtga cgaattttac
      121 acacaatatc acgacattga gaaagagatg aatgcttatc ttgattttga tcctgatgta
      181 tttcgtggca aaaccatctt gttgccttgc gatgatcctg aatggagtaa ttttacactt
      241 tattttgcac aaaattttgc cagacttggt ttaaaaaaat taattagtac cagctttgct
      301 catagtagca aacctctcaa tatcccctac caaccaagct tatttgaaag tgaagattca
      361 caatttaatg ccctaatttc accacttaaa ggcaagattt ttacgcttga caaagatctg
      421 aacaatgacg gcaaaatcga tcaccacgat ttagcgtgga aatatttaaa aagcgatggc
      481 gattttcgct ctgatgaaat taaagcccta cgagatgaag ccgacatcat tattactaat
      541 ccgccatttt ctctatttcg tgaatttatt acgtggatta tggaagcgga taagaaattt
      601 gcgattattg gcaatatgaa tgcgattact tataaagaag ttttcccatt gattaaagat
      661 gacaaaattt ggttagggaa aggatttact agaagttgtg cacatttttt tagtccgtat
      721 gaaagtgata gcgaatatct agagttagat agatttgaaa aattaggcat agctgttccg
      781 aaaggattat ttgttactcg agtagcaagc attcactggt tcaccaatat agaacacggt
      841 cgccgtcatc aaccattaca attaatgaca atgacggata atctcaaatt caataaaaaa
      901 ctagacggta aaaatgccta tcaacaatac gataattaca atgcaattga agtacctgaa
      961 accaaagcaa taccgagtga ttttgacgga gttatgggtg tgccgatctc gttcttggat
     1021 aagtattgcc cagagcagtt tgagattttg ggagcaacgc aacgtggttg ccacgatgaa
     1081 gtgcctgaca caaagaaata cgatgattat tgggaaatga aacagaatgg agaaaaaaca
     1141 ggatcaggcg gagggaaaac gaatgaaaat gccaatttag cgacaaatga tggaaaaaaa
     1201 attatttgta gaagatcaga cttgatctga caattcactc taaaaagtga gagtttcccg
     1261 tttagaatat gagtgtcaaa aatcaatcta aacaaaaagg aaactctcat gttttattct
     1321 aacaaccctc t
//
LOCUS       DANLUT010000255         1320 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.256, whole genome shotgun sequence.
ACCESSION   DANLUT010000255 DANLUT010000000
VERSION     DANLUT010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..284)
                     /locus_tag="PXB38_002503"
     CDS             complement(<1..284)
                     /locus_tag="PXB38_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HDL5354742.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGTKNQFIPCENQSEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWL"
     gene            complement(288..1004)
                     /locus_tag="PXB38_002504"
     CDS             complement(288..1004)
                     /locus_tag="PXB38_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5354743.1"
                     /translation="MPVSISNQMKLDLAKLEQNAMLDLYEVDLRTLKDKSGNAGSVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITGIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRLIMADTCTWIYRSSECGYTGKQYFDEKDKATSDPKADKCSHCLNG
                     CTLRGNQRNFGGFVSVNKLG"
     gene            complement(1004..>1320)
                     /locus_tag="PXB38_002505"
     CDS             complement(1004..>1320)
                     /locus_tag="PXB38_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354744.1"
                     /translation="WCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLNNLLRAYTGTIK
                     VKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFSVTFKE
                     VP"
BASE COUNT          342 a          301 c          270 g          407 t
ORIGIN      
        1 agccaccaat ctaaaccggt ctgtacctgc attttgcgat caagcacaga taatataggc
       61 ttgccgtttg gctcgggatg tgaatgtacc accgctacca gttcgccttt ttcttctgct
      121 ttgatgtaat caagatcgga tatttcaaag taattggctt tgtcttccga ttggttttca
      181 caagggataa attgattttt cgtgccgtca aaaacaacaa aaccacacat ttcgtgcggc
      241 tcgtgttgga gagcgtagtc gattatttgt tgctccaatt ccatttctta ccccaattta
      301 tttacagaca cgaatccacc aaaattgcgt tgattacctc gcaatgtaca accattcaag
      361 caatgactgc atttatcggc ttttggatct gacgtcgctt tatctttttc atcaaaatat
      421 tgcttaccgg tataaccaca ttctgacgag cggtaaatcc aagtgcaggt gtctgccata
      481 atcagtcggc tgggtatttt ggcattatcg gtttcaatcg gtaatgccag cgtaaaggtc
      541 gccgtttctc gggtgaggct ggtaagctgc tcaatcacaa aatgactgat tatttcctga
      601 tttggatcag ctttcgcatt acccccggca aaattcacgg catctaaata ttgggcgtaa
      661 acctgatgcc ggcggacaat cgcaccaata cattcgtcaa actgattggc aatgccggta
      721 attaaaccaa acagatttga tagcgtgaga gtcgggcgat tgctcgggcc gctactgttt
      781 cgttcaaatc cacttgcctc aatcgggtac ggatcgtaag tccgcccttg ccagacaata
      841 cttgttttga gttcatttaa ccccgaataa aagcggtaaa ctgagccagc attaccgctt
      901 ttatccttta atgtgcgtaa atctacctcg tacaaatcaa gcattgcatt ttgctcaagt
      961 ttggcaaggt cgagtttcat ttgattggat atgctaacag gcattagggt acttccttaa
     1021 aggttacact aaattcccaa tggtttaagc caaccatttt tgcgggccaa ctgctacaca
     1081 ctaccttttt gttttgttgt gtgtacggat ctttaaagta aaaaggggaa acaccacgat
     1141 gtttggcaaa aaatgcctcc accgctaaat gttccccctt tttcactttg attgtgcctg
     1201 tataggctcg taataaattg tttaagcctt tgggcgagcg ttgggtataa ccatcgccga
     1261 atttgacttc cattatttca ggggtatttt caaccgctaa atcggtgcga acacaccatt
//
LOCUS       DANLUT010000256         1307 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.257, whole genome shotgun sequence.
ACCESSION   DANLUT010000256 DANLUT010000000
VERSION     DANLUT010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1307
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..431
                     /locus_tag="PXB38_002506"
     CDS             <1..431
                     /locus_tag="PXB38_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5354745.1"
                     /translation="KSLPPVFARLCKKLKSLDLVNLELGWQELENGIRMNVMSFETTP
                     AEGKKAELHRKFIDIQLLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEIDDKNNL
                     ILKPNMFAIFLPYEPHKPGNSVNGNKTLKKLVVKVPVELI"
     gene            441..1307
                     /locus_tag="PXB38_002507"
     CDS             441..1307
                     /locus_tag="PXB38_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5354746.1"
                     /translation="MSSRGKILNTISSLQHSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATNQDNRVLLDTDVSESDTSKDIA
                     EKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMRI
                     GLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITHN
                     LRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQK
                     TLNVILEQRVKG"
BASE COUNT          449 a          199 c          271 g          388 t
ORIGIN      
        1 taaaatcact tccaccagta ttcgctcgcc tttgtaaaaa attaaaaagt ttagatttag
       61 ttaatttgga attaggctgg caagaattag aaaatggtat tcgcatgaat gtaatgtcat
      121 ttgaaactac gccagctgag gggaaaaaag cagagttaca ccgaaaattt atcgatattc
      181 aattattgat agacggcgaa gaaatgattg aatacgggtt aagccagcca gatttatcta
      241 agtatgatga atatcgagat gaagatgact accaattaac agctgagatt gatgataaaa
      301 ataacttgat cctcaagcca aatatgttcg ctattttcct cccttatgaa ccacataagc
      361 ctggaaattc ggtgaatggc aacaaaacat tgaaaaaact ggtggtgaaa gtacctgttg
      421 aattgattta ggaggctact atgtctagtc ggggaaaaat tcttaataca attagctcgc
      481 tacaacatag tttaaccaaa acagagaaga aaatagctgc tgctatttta tctcagccgg
      541 aattacttag ccaatgttca ttatctgaag tggccaaaca attagatgtt ggtgaagcaa
      601 cttttattcg tttttgtcgt acattaggtt ttaaaggtta taccgacttt aaattagagc
      661 ttgcaataga gttggctaca aatcaagata atagagtatt gcttgatacg gatgtttcag
      721 aatcggatac atcgaaagat attgctgaga agctcaaagt gagtttagat aacgttattg
      781 aagagactat taatttgctt gactttaacg tgttggaaaa agttgttgaa gaattacgta
      841 aggcaaaacg gatcttttta tttggagtgg gttcttctgg gttaaccgca gaagatgcaa
      901 aacataaatt aatgcgtatt gggctacaaa ccgatgcagt cacaaataat cattttatgt
      961 atatgcaggc ggcattggtg aaagaggggg atttagttat agggattagt cattcaggct
     1021 attctgaaga aattgtgaaa tcactacgtt tttctcgtgc aaataaagcg acaacggttg
     1081 cgattacaca caatttacgt tcccccgtca cggaagaggc taattatgtg ttaattaatg
     1141 gtaatcgaca ggggcatatg caaggagatt ctatcggtac taaaatgtca caacttttcg
     1201 ttcttgattt aatttatacc ttactagtta aagccgaacc cgaaaatgcg ttgaaacaga
     1261 aacaaaaaac actgaatgtg attttggaac aacgtgttaa aggctaa
//
LOCUS       DANLUT010000257         1253 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.258, whole genome shotgun sequence.
ACCESSION   DANLUT010000257 DANLUT010000000
VERSION     DANLUT010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            12..1241
                     /locus_tag="PXB38_002508"
     CDS             12..1241
                     /locus_tag="PXB38_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL5354747.1"
                     /translation="MQFREINPSPRLLMCPGPTDADPRVLRAMSAPILGQFDPEFTSL
                     MNETMEMERRLFQTKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNE
                     ILARSGADITIIEREWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKI
                     CKQYDAMLIVDTVATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEII
                     AKRKRVEKGIRAESDIDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTEATSAQYGVHEA
                     LRIILQEGLEARFARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPA
                     LRSDILNHFGIELATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVP
                     SGDAVAAALAVYKEADK"
BASE COUNT          385 a          258 c          268 g          342 t
ORIGIN      
        1 aggaaataat tatgcaattc agagaaatta atccctcccc tcgtttatta atgtgccctg
       61 gcccaacaga tgctgaccca cgtgttttgc gtgcaatgtc tgcacccatt ttagggcaat
      121 ttgaccctga gtttacctca ttaatgaatg aaacaatgga aatggaacgc cgtttattcc
      181 aaaccaaaaa tgagcaaact tatgtagtca actccacctc tcgtggtggc ttagaaactg
      241 ttctaaccgc agcgatttgc ccaggcgata aagtgttaat tcctgcattt ggtcgttttg
      301 gttatttatt aaatgaaatt ttagctcgta gcggtgcaga tattaccatt atcgaaagag
      361 agtggggaac cgtatttgaa ccagaagaaa ttgaagcaga gttgaaaaaa ggcggctata
      421 aagcagttgc tattattcac ggcgaaacct caacctctat gatgcaaccg ttagaagaga
      481 tcggcaaaat ctgtaaacaa tatgatgcaa tgttaattgt agataccgtt gcaaccttag
      541 gcggtgtaga tattcgtgtg gatgaatggg gcattgatgc ttgtatcggc ggtacacaaa
      601 aatgtatttc cgccccatca ggcacagctt taatcactta taacaaacgg attgaagaga
      661 ttattgcaaa acgtaaacgt gtggaaaaag gcattcgtgc agagtctgat atagatggca
      721 cattaccgcc aattccaagt aactacttag acttggcaca gctacaagat tactggagcc
      781 cacgccgttt aaatcaccac acagaagcca cttctgcaca atatggtgta cacgaagcgt
      841 tacgcattat tttacaagaa ggcttagaag ctcgttttgc tcgccatatt ttaaacgaca
      901 aagcattatg tgcaggttta gaagcaatgg gtttgaaaat ttttggcgat cgcaaacata
      961 aagcccccgt tgtaacggca ttccacattc cagaaggtat gagtggccca gcattgcgta
     1021 gtgatatttt aaaccacttc ggtattgaat tagccacctc attcggcccc ttagatggaa
     1081 aagtaatccg tatcggtaat atgggtttct caagccaaaa acgtaacgta cttttaacct
     1141 taggtgcgtt agaagccgta cttttaagcc ataaagtaaa agtgccttca ggcgatgcgg
     1201 ttgcagctgc cttggcagtc tataaagagg ctgataaata accaccttcc taa
//
LOCUS       DANLUT010000258         1225 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.259, whole genome shotgun sequence.
ACCESSION   DANLUT010000258 DANLUT010000000
VERSION     DANLUT010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            54..>1225
                     /locus_tag="PXB38_002509"
     CDS             54..>1225
                     /locus_tag="PXB38_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5354748.1"
                     /translation="MFKIKNSVILLNAVLLSACTSNGGSFDTNSVKASPSHSSSSKDS
                     ATQPKSERRTISSAEGSAQPSLGFQTKIPRRNFFGSTGEENGAIGEITPIVGEPGKPL
                     SLEEEMKKLEEEVKKLGYDEDDIIHTHDGKKLHRKREMKFVRSGYFIHLGASAERSKR
                     GEPRLLKTGPTGYVYYLGTQPSKAFPTEIATYKGTWDFTTNASAKNNSKYFEGSNAGT
                     NVGATSEDNQANTDDKDKPIGHSSEFTVNFSEKTLKGTLTKNGYVNPREKDKQEITDH
                     YKIEANIHGNRFNGKAKALKTDDPYFGKDSNTVEGGFYGDKAQELAGKFLADDKSIFV
                     VFAGKRDEKSEDKVEKKFDSVQVSLKDLAKSDMDTFGLATHLVIDGVQIALLPEEKT"
BASE COUNT          436 a          191 c          263 g          335 t
ORIGIN      
        1 atagttcttc tatataaata aaatggtaat catttttaat taaggagaaa attatgttta
       61 aaataaaaaa tagcgttatt ttattgaatg ctgtactact ttcggcttgt acttcaaacg
      121 gtggtagttt tgataccaat tcagttaagg caagcccatc tcattctagc tcttctaaag
      181 actcagcaac tcagcctaaa tcagaacgca gaacgatatc ttcggctgaa ggctcagctc
      241 aaccatcctt aggatttcaa actaaaattc cacgtcgtaa tttctttggt agcactggag
      301 aggaaaatgg ggcgattggt gaaattacac caattgttgg tgagccaggc aagccattat
      361 ctcttgaaga agaaatgaaa aagcttgagg aagaagtaaa aaaactcggt tatgatgaag
      421 atgacattat tcacacccac gatggaaaaa aattacaccg taagcgagag atgaaatttg
      481 ttcgttcggg ttatttcatt catttagggg cttcagccga gagaagtaaa agaggagaac
      541 ctcgtcttct aaaaacaggt cctacagggt atgtatatta tttaggcact caaccatcta
      601 aagctttccc aaccgaaata gcaacttata aagggacttg ggattttact actaatgcat
      661 ctgcaaaaaa caacagtaag tattttgaag gaagtaatgc tggcacgaat gttggggcaa
      721 cgtcagaaga taaccaagca aatacagatg ataaggataa gcctataggg catagcagtg
      781 agtttacggt taattttagt gagaaaacac ttaaaggtac tttaaccaaa aatggctatg
      841 taaatccaag ggaaaaggac aagcaggaaa ttactgatca ttataagata gaagcgaata
      901 tccacggaaa ccgctttaat ggtaaggcaa aggctttaaa aacagacgat ccttactttg
      961 gtaaagatag taatacagta gaaggcggtt tttatggcga taaagcgcag gaacttgcgg
     1021 gaaaattttt ggcagatgat aaatcgattt tcgttgtatt cgcaggtaag cgtgatgaaa
     1081 aaagcgaaga caaggtcgaa aagaaatttg attcagtgca agtgagtttg aaagatttgg
     1141 ctaaatcaga tatggatact tttggtctgg caactcattt agttattgat ggtgttcaaa
     1201 ttgctttatt gccagaagaa aaaac
//
LOCUS       DANLUT010000259         1224 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.260, whole genome shotgun sequence.
ACCESSION   DANLUT010000259 DANLUT010000000
VERSION     DANLUT010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            1..507
                     /locus_tag="PXB38_002510"
     CDS             1..507
                     /locus_tag="PXB38_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL5354749.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALASDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            566..>1224
                     /locus_tag="PXB38_002511"
     CDS             566..>1224
                     /locus_tag="PXB38_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL5354750.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGTGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     D"
BASE COUNT          412 a          203 c          252 g          357 t
ORIGIN      
        1 atggcaatgt caaatatcgg tttagataaa gaaatcgcaa aaaaattagc agatgagtta
       61 aatggtttat tagctactta ccaagtgttt tacactaatg tacgtggcta ccattggaat
      121 gtacgtggtg tgaacttctt tgaattacat gcaaaatttg aagaaatcta cgatgattta
      181 gtgacaaaag tagatgaaat tgcagaacgt attttaacct taggtcacac acctcaaaat
      241 gcgttcagcc aatatttaac caagtcacaa attcaagaac atattggtgt ttcagctgca
      301 caagaatgtt tacgtggtac tttaaatggt ttcaaaacat tactgggaca acaacgtgaa
      361 attcttgctc tagcaagtga tgcaaacgat gaaggtactg cttctcaaat gagtgattac
      421 atcaaagaac aagaaaaatt agtatggatg ttcactgcag cttgtgctga atgttcagac
      481 tacgcacaag gttgttcttg taactaagtt gcaataatat aattaacccc cgataatgaa
      541 agattatcgg gggttacttt ttcagatagc tatgtcgcaa ggatttcaat ttaaacagtt
      601 ttttattcgg cacgacagat gtgcaatgaa agtcaataca gatggtattc tattgggagc
      661 gattgctcac ataaaagatt gtcagaatat tttagatctg ggtacaggtt ctggtttagt
      721 agcacttatg cttgctcaga gaacagatga ttgttgtcac attactgcgt tggaacttga
      781 accaaatgcc taccaacaag cggtcgaaaa tgcccaaaat tctgcatggg caaatcggat
      841 ttccgttttg caaggtgatg tgatgcagca ggcatttgaa cagaaatttg acttgattgt
      901 tagtaaccca ccttattttg cagattcact tgcagctcga accacagaga gagatttagc
      961 tcgctcaatt agccattaca gccacttgaa ttggctggca aaagcaaaac catggttagc
     1021 agagaacggg aaaattacac tgattttacc tatagcagct gcagaaaaat tagttgacca
     1081 aagtgaacaa attggattgt attgtgttga acaatggtta atttttacca agagcggcaa
     1141 attggctaaa cgcagtatag tgagttttag tttaaacaag caaaagcgtg aacataaaga
     1201 gctgatcatc tatgatctag ataa
//
LOCUS       DANLUT010000260         1183 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.261, whole genome shotgun sequence.
ACCESSION   DANLUT010000260 DANLUT010000000
VERSION     DANLUT010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..845
                     /locus_tag="PXB38_002512"
     CDS             <1..845
                     /locus_tag="PXB38_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5354751.1"
                     /translation="AENMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAAR
                     IAAAMTMYIKKGDAALYDDDSNSDGNRLFDIAPGAVIDDLKPGEDIGLINSNRPNVNL
                     ETFRNGQLRATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRP
                     IYREWLKMAIASQAIKIPSDIDERSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLAT
                     EGQAIRASGNNPAEVKRQRIVEIRENQAEGLKFDTDLTNYSQQNSGSSNRNLEDSTKE
                     NEKE"
     gene            849..>1183
                     /locus_tag="PXB38_002513"
     CDS             849..>1183
                     /locus_tag="PXB38_002513"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354752.1"
                     /translation="MTTVVLDTVKVVANPPVIKPIFPPEFSEMEKLKRENYYFGRRIA
                     YAPNKVQSYVSLANSSVELSKKINELEKKIISAKSIGEIFKIISGLLMLYAKILNKVE
                     QEKLKKLYS"
BASE COUNT          373 a          236 c          285 g          289 t
ORIGIN      
        1 cggcagaaaa tatgttgcac ctcgcctttc gtaagcggtt acatcaaatc cgtggcgtga
       61 gtatgttgca cggcgtgatt gtgcgcttgg cagatctgaa agagtacgaa gagagcgaac
      121 gagtcgccgc acgcattgcc gcagcgatga cgatgtacat taaaaaaggc gatgcggcac
      181 tgtatgatga cgacagtaac agcgatggca accgcctgtt tgatattgcc cccggtgcag
      241 tgattgatga tttaaaaccg ggtgaagaca ttggcttaat caattccaac cgcccaaatg
      301 tgaatttgga aactttccgc aatggacaac tgcgagccac tgccgccggt actcgttcga
      361 gctattcgag catcgcccga gactacaacg gcacttactc tgctcagcga caagaattgg
      421 ttgaaagttt tgaaggctat gcggtattgc aagatgcgtt tgtggcggca atcagtcgcc
      481 cgatttatcg ggagtggctc aaaatggcga ttgcctcaca agctatcaaa atcccgtccg
      541 atattgatga aagatcgctg tttaatgccg tctattccgg ccctgtaatg ccgtggattg
      601 atcccatcaa agaggcgaat gcgtggaaag agcggattaa aggcggtctg gcaaccgaag
      661 ggcaagcgat tcgagccagt ggcaataacc cagccgaagt caaacggcaa cggattgtcg
      721 aaatccgaga aaaccaagcc gaagggctga aatttgatac cgatttaact aattacagcc
      781 aacaaaatag cggcagttcg aatagaaatc tcgaagattc tactaaagaa aatgaaaagg
      841 agtaaattat gacaacagtt gtgttagata cagttaaagt tgtggcaaac ccaccagtaa
      901 tcaagccaat atttccacca gaattcagtg aaatggaaaa gctgaagcgt gaaaactatt
      961 actttggtcg tagaattgct tatgccccaa ataaagttca aagttatgtt tctttagcaa
     1021 actcatccgt agagttaagt aagaaaatca atgagttgga aaagaaaatt atttcggcta
     1081 aatctattgg tgaaattttt aagattatca gtgggttact tatgctatat gctaaaattc
     1141 taaataaagt tgagcaggag aagttaaaaa aactgtattc gtt
//
LOCUS       DANLUT010000261         1174 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.262, whole genome shotgun sequence.
ACCESSION   DANLUT010000261 DANLUT010000000
VERSION     DANLUT010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..204
                     /locus_tag="PXB38_002514"
     CDS             <1..204
                     /locus_tag="PXB38_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5354753.1"
                     /translation="LGGVAQMLTKMPNAPNIGNEKEKENSTAFSNLNNLVAQGKPVPL
                     AYGLIRTGSLVISQGVETMTVEV"
     gene            207..>1174
                     /locus_tag="PXB38_002515"
     CDS             207..>1174
                     /locus_tag="PXB38_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5354754.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTQIQNDDGSYNFNNVSGQLNVGTQDQNVLDGYDSSQNEVSVGVEVKKKSGA
                     IVRTVTDERISRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKYSSQ
                     YLESVVFDNLPPVPFNISVERVTKDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGI
                     SFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKIAWTNNPAWEIYDL
                     APILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWL"
BASE COUNT          356 a          231 c          274 g          313 t
ORIGIN      
        1 cttggcggtg ttgctcaaat gcttaccaaa atgccgaatg ccccgaatat cggtaatgaa
       61 aaagagaaag aaaactcaac ggctttttca aatttaaata acttggtggc tcaaggcaaa
      121 cctgtgccgt tggcttatgg cttaattcgg accggctcgc ttgtgatatc gcagggagtt
      181 gagacgatga ctgtagaggt ataattatgg gattatttag tcgtaagaga aaaaatcata
      241 ctcctaaaga agcaccggaa accggtcgct ctaaacagat tgtaaatatt gtggaattgc
      301 tgtgcgaggg cgaaatcgag ggcttggttg atggctttaa atcgatttac ttagacggca
      361 cgcagatcca aaacgatgac ggcagctata actttaataa tgtgagtggt cagttaaatg
      421 tcggtacgca agaccaaaat gtgttagacg gttacgacag ctcacaaaat gaagtgagtg
      481 tgggtgtaga agtcaagaaa aaaagcggtg caatcgtccg caccgttact gatgaacgca
      541 tcagccgttt gcgtttaacg ttgggcgtgc ggtcactatt ccatcaaaat aatcaaggcg
      601 ataccaatac caccaatgtt gatttaaaaa tcacgattgg cacacggcaa tattcgcata
      661 gctttaacgg caaatacagc tcgcaatacc ttgaatctgt ggtgtttgat aacctgcctc
      721 ctgtaccgtt taatatctcg gttgaacgtg taacaaagga tagcaattct caacgactac
      781 aaaacggtac aatttggagc agctataccg aaattatcga caccgaattt acttacccta
      841 attcagcggt tgccggtatc agttttgatt cggagtattt taataatatc ccgacccgaa
      901 actacctaat taaagcgaaa aaagtcaaag tgccaagcaa ttatgatcca gttaaacgca
      961 cttacaccgg cttttgggac ggcacattta aaattgcgtg gacgaacaac cctgcttggg
     1021 aaatttacga tttagctccg attttaagca aaatgcttgg ggttgaaatc agttttgaca
     1081 aatgggcgtt gtatgatgtt gctcgctatt gcgatcaact tgtgccggac ggtatgggtg
     1141 gaatggagcc tcgtttcacc tgtaacgtat ggct
//
LOCUS       DANLUT010000262         1137 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.263, whole genome shotgun sequence.
ACCESSION   DANLUT010000262 DANLUT010000000
VERSION     DANLUT010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            226..942
                     /locus_tag="PXB38_002516"
     CDS             226..942
                     /locus_tag="PXB38_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5354755.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(985..>1137)
                     /locus_tag="PXB38_002517"
     CDS             complement(985..>1137)
                     /locus_tag="PXB38_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5354756.1"
                     /translation="RFRHTVATQLMKKPENVYVVQKLLGHKDISVTLGYIEHDVEMLR
                     ETVNLL"
BASE COUNT          360 a          188 c          200 g          389 t
ORIGIN      
        1 cgatccaggt cttacacatt ctttcaagtt tgtaaagcct gaaaattatt ttttatactt
       61 gatttttgtc aaaaagtctc tatactatat ggcagggtca gttttcgctg tttaacggtg
      121 tttaatgaga ttttcattac tggctctcct taatagaaat ttatggaaga gctatctgat
      181 agagtaatct agcgatagct ctttttcatt gaacaaagag gctatatgta tcttatgtat
      241 gttgatgagt ctggttctac gacagatcct actcaaaaat attttgtatt atcaggtatc
      301 gctgtatttg aacgaaatac tcattggatt gagaaaaaaa tgaatgtgat agcctctcaa
      361 ttctgtcaat attctgaagg gagtgatcca tatttctatg agttacatgg ttcaccaatg
      421 agatctggaa agagtgaatg gagaggcatt ccaatgagtg agcgtattaa tgccattcaa
      481 gattgcttga aattagttca aagtaataat attcgtatat ttgcagcagt tatagagcaa
      541 gggtattcta gtggtcagga tactattaca gaatgttttg agcaaatatc atctcgattt
      601 gatatgtatc tgagccgttt acatgcccaa ggtaataccc aaagaggcat ttctatcttt
      661 gataaatcat cgactgagaa gtcaatccaa gcacttgcaa gaacattcaa aaatagtggg
      721 catacttatg ggaaacttag aaatttctca gaagttccat tatttcttga ctcaaagtca
      781 tcgagattaa ttcagctagc ggatctagtt tcctatgcga tatttagaca ctatgaacac
      841 aatgatagct cattttacga tattataaga aataactttg attatcataa cgggcgtatt
      901 catggtttat atttacggaa caaagaagat attatttcat aaaaattcgc cccaaaaggg
      961 agaagtatct cccttttgta ttttttataa caaattaacc gtttctctca acatttccac
     1021 atcgtgttca atatatccta gtgtcacact gatatcttta tgccctaaca gtttctgaac
     1081 cacataaaca ttttcgggct tcttcattaa ttgagtagca actgtatgtc gaaatct
//
LOCUS       DANLUT010000263         1126 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.264, whole genome shotgun sequence.
ACCESSION   DANLUT010000263 DANLUT010000000
VERSION     DANLUT010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..261
                     /locus_tag="PXB38_002518"
     CDS             <1..261
                     /locus_tag="PXB38_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5354757.1"
                     /translation="EAFDLFCYAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIR
                     ETPRTAEQAVEIEEKPAKPQPKPTKAKSSWLSGGGRKTGGWL"
     gene            258..482
                     /locus_tag="PXB38_002519"
     CDS             258..482
                     /locus_tag="PXB38_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354758.1"
                     /translation="MSLYTIDELKDKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQHTKQHRIKYARFI"
     gene            482..>1126
                     /locus_tag="PXB38_002520"
     CDS             482..>1126
                     /locus_tag="PXB38_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5354759.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGDV
                     HEDLAEQIRKLWAEWSVKPEVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSPIAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGM"
BASE COUNT          344 a          275 c          289 g          218 t
ORIGIN      
        1 gaagccttcg acctgttctg ctatgcccac gccattgcaa ttttacgagg ctacgagcga
       61 atcaaatggg gcgatgaaaa cgatgtgcca agctgggcaa aactgcccga catcaaccct
      121 aacatcattc gggaaacgcc aagaacggct gaacaagcgg tcgaaattga agaaaaaccc
      181 gcaaaaccac aacccaaacc gaccaaagca aaaagcagtt ggctaagtgg tggcggacga
      241 aaaacaggag gctggctatg agcctttaca ccatcgatga actcaaagac aaaatccgca
      301 cgcttgatga gaaaattgag accgctcaat cgcaggtgag ctttaacggg cggtcggtat
      361 cctatcaagt ggcggaatta accaaacagc gtgatcgcta tcaaacaatg ctggatgaac
      421 aacttgccca aagcgggcaa cacaccaaac agcatcgaat taaatatgcg aggtttattt
      481 gatgaacttc ctcgaaaaaa ccattgccac cctttccccg aaatgggcgg caaatcgctc
      541 tcgaaatcgc tatgtgctaa atgcctatga ggcggcacag cctagccgaa cccataaggc
      601 aagccgagag agcaaagggg caaactctac tgttcgccaa agtgcggtca gcctacggga
      661 acaggcacgg gcgttagacc aaaatcacga tattgtgatc ggcattttag acaaaatgga
      721 agaacgggtg attggctcga aaggtattca tatcgaacca cagccactca cgcttgccgg
      781 tgatgttcac gaagatctcg cagagcaaat ccgcaagctg tgggcggaat ggtcggtgaa
      841 acccgaagta acaggcttat atactcgccc cctgttagag cgaatgctac tgcgaacttg
      901 gctacgagac ggtgaagtgt tcgtgcagtt ggtgaaaggc aaagtggcag ggttagaaca
      961 cggctcgccg attgcgtttt cactcgaagc cttagagccg gactttgtgc caatgcaatc
     1021 cgatgaggca aaaaacggct tggtgcaagg cgtgtttctc aatgcgtggc ggaaacctac
     1081 cgcttaccaa gtctatttgg ataatccgca agaaagtaac ggaatg
//
LOCUS       DANLUT010000264         1078 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.265, whole genome shotgun sequence.
ACCESSION   DANLUT010000264 DANLUT010000000
VERSION     DANLUT010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(44..277)
                     /locus_tag="PXB38_002521"
     CDS             complement(44..277)
                     /locus_tag="PXB38_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5354760.1"
                     /translation="MEELKAYLNSLTTKEQESFALRCNTTVGYLRKSISRNSRLGAEI
                     CVAIERETKGLVTRKHLIEDWHLRWPELANDKQ"
     gene            406..>1078
                     /locus_tag="PXB38_002522"
     CDS             406..>1078
                     /locus_tag="PXB38_002522"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354761.1"
                     /translation="MNELRLLRQKKLKRLIDEVSEGNIADFARKIGKEPSYVARMLYP
                     SDKAGAKPIGEKMALHICHKFVLPLDWFNRDDDGEFIQINNGEEDNIILSVLNIQASA
                     GIGAKNGDVMEVIREIKFNPEQFYNLFRGITPEHIELISVKGDSMEPTFSHGDLLFVD
                     VTIQEYDGDGVYVFTCDDYIFVKRIQKTGRHFTILSDNDRYKPWQLDQEIYIHGKVKV
                     HQSQQL"
BASE COUNT          359 a          178 c          201 g          340 t
ORIGIN      
        1 actgtggtag aatgatttga gttttttaga aaaaactttc cctttattgc ttgtcatttg
       61 ccaattccgg ccagcgtaag tgccaatctt caattaaatg ctttctagta actaaacctt
      121 ttgtttcacg ctctatcgca acgcaaattt ccgcacctaa tcgagaattt cttgagatcg
      181 attttcttaa atacccaact gtcgtattac aacgcaaggc aaaactctct tgctcttttg
      241 tggttaaaga attgaggtat gcttttaatt cttccattgt gagtcctctt ttaaaaacgc
      301 caaaataata ccattaggta aaaataatat caataccatt tggtttgttt accttttagt
      361 aaataagagt acaattacta aaaagtaatc cttagaggag gttatatgaa tgagttgaga
      421 cttcttagac aaaaaaaatt gaaacgccta attgatgaag tgagtgaggg aaatattgct
      481 gactttgcaa gaaaaatagg taaagagcct agctatgtag caagaatgtt gtatccgtcc
      541 gataaagctg gagctaagcc tattggtgaa aaaatggcac tccatatttg ccataaattt
      601 gtgctacccc ttgattggtt taatcgagat gatgacggcg aatttattca aatcaacaat
      661 ggtgaggaag ataatatcat cttaagtgta ttgaatattc aagcatcggc cggtatagga
      721 gcaaaaaacg gtgatgtgat ggaagtcatt agagaaatta aattcaatcc agaacaattt
      781 tataacctat ttagaggtat tacgcctgaa catatcgagc tgatcagtgt aaaaggcgat
      841 tctatggagc caacattctc acacggtgat ttgctttttg ttgatgtaac tatccaagaa
      901 tacgatggcg atggtgtgta tgtttttact tgcgatgact atatttttgt aaaaaggatt
      961 caaaaaacag gcagacactt tactatttta tctgataatg accgctataa accttggcaa
     1021 ttagatcaag aaatttatat tcacggcaaa gttaaagtcc accaaagcca acagttga
//
LOCUS       DANLUT010000265         1065 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.266, whole genome shotgun sequence.
ACCESSION   DANLUT010000265 DANLUT010000000
VERSION     DANLUT010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(10..669)
                     /locus_tag="PXB38_002523"
     CDS             complement(10..669)
                     /locus_tag="PXB38_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL5354762.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPKLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            799..1005
                     /locus_tag="PXB38_002524"
     CDS             799..1005
                     /locus_tag="PXB38_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354763.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
BASE COUNT          320 a          219 c          205 g          321 t
ORIGIN      
        1 aaccgctggc tacaaatagc tccgatgctc aaccgccaca ccgataatgc gaatatcttg
       61 tttcattgag ctgagtttcg ggaagtcagg attaaggggg attaattcaa aatgaggatt
      121 gccggattca gaccattcgc ctaattctcg gtaacgtttt aaggttgctt cgcctgtgcc
      181 attgaccgca gcaacataat cgcccgggtg aggacgtttg cgaatatcga ttaacaccag
      241 atcgccttca ctaaatttag gctccatcga cattccggaa attcttaaaa agaaagcgtc
      301 cggtccggca tcaatttcag tatcaatata gtcatagccc tccgaatctt tgaaatcaaa
      361 ggcttctgtc cataaacccg cttgtatatt gctgatcaac ggatatgagt tcgattttgt
      421 cggtctggca agctgaacgt ttgtatcaaa agcaagtgtt tctggagaaa caccaagcac
      481 tttgctgagt atttcaatat catcaagatc gggagtacga ttgtttctct cataattagc
      541 aatgcgagat tgcccccatt tgttattttt atctcgatta tctattgatg tacatctttc
      601 agcaacttca tattggctga ttcctagctg ttctctgtaa gccttaattc tactacctaa
      661 ggttgtcata gcactctcct attagatttt cctcatttta acacgctccg ttatatcctt
      721 gcgaatcaca aaatgaaatt tacaattagt tcattttgtg atttaattaa aagatataaa
      781 tcacaaagag aaatttgtat gaataagata gctgaaatac gaaaccaaat tggtataagt
      841 caagctcagt tagctgttca gattggttgg gggcaaccaa gaatagctaa ctatgaaact
      901 ggaaatcgta ccccatctat ttacgttgct caaaaaattg ttgagggatt gaacgaatta
      961 ggtgcaaacg tacgaattga tgacgttttc cccgttggca actaatttac cccaagatgc
     1021 ttgcaatgcc acgcaatgaa ttaacaaaaa atgcaagagc gattg
//
LOCUS       DANLUT010000266         1062 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.267, whole genome shotgun sequence.
ACCESSION   DANLUT010000266 DANLUT010000000
VERSION     DANLUT010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..933)
                     /locus_tag="PXB38_002525"
     CDS             complement(<1..933)
                     /locus_tag="PXB38_002525"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL5354764.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
BASE COUNT          292 a          225 c          253 g          292 t
ORIGIN      
        1 aaattgtgtc aaagcatact ctgccaattc tgtaagcact tcatcagcag gacgctgagt
       61 gggttttaaa ttgagtgcca aatgtttcac gcctttttct tgttcttttg cccaaaagtc
      121 tgccaagcct tttgcaccac cacgcagata aatgttgtta aataactgtg ctttggcgtt
      181 tttgtcgtcc aaaacttcca caaattgagc atagccaaat gctgtggggg tgtctttttg
      241 gcgtaaatcg gcaagggtgt tgatgatgtt tgcggtgtcg gcaggattca caccgtgcca
      301 aatccacgca tcaggtacat tagcaagcca gtccatttct tgccttgctc gtccaatcgc
      361 cacaatgggc aagcggtgtt tgggtttggg gagcaaatcc aaattgtctg ttaaatcggc
      421 ataatgtttg cctttgaaat ggggaaaatc ctgctcggtt aaggtgttaa tcaaatcaat
      481 gctttcacga aaacgctcgc tacgagaggc aaaatccgcc ccaaatgcag ggtattccac
      541 aggtctatcg ccagaggata agcccaataa aaaccgtcca tgactcaaac tatccacact
      601 tgtcgccatt ttggcaatgt gaatgggact acgcaaaggg gcaatcagcc ctgccgtacc
      661 aagggcgatg ttttgggtgt gggcggacaa aaaaccaagt gtaaccatcg ggtcaagccc
      721 ttgccccaca tcgccaaaat gagggtcata aaacggcaca tctcgtaccc acaatgctga
      781 aaagcccaag ttttcagcca gccgtgcatt gtcggcaatg gtggtcaaat tgtctggaat
      841 gtgattttga tagcccataa agggggcaat taagcccagt gttaattgat tttgcccaaa
      901 aacttgggag aaaatggggg aaagcgtgtt cattttggcg tacctgtctt atttaagata
      961 aggtatttta agggcttttg agtttgctta aaatgggata aattgagaaa gtgttttgct
     1021 aaattggcat aaatagacgc tttcaagctg actgaaaatt tg
//
LOCUS       DANLUT010000267         1041 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.268, whole genome shotgun sequence.
ACCESSION   DANLUT010000267 DANLUT010000000
VERSION     DANLUT010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..225)
                     /locus_tag="PXB38_002526"
     CDS             complement(<1..225)
                     /locus_tag="PXB38_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354765.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGK"
     gene            369..758
                     /locus_tag="PXB38_002527"
     CDS             369..758
                     /locus_tag="PXB38_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5354766.1"
                     /translation="MADPIEWSIITTDCFDEWFGQQDESTQERVLACLIYLRKFGYSL
                     GRPYADTVYQSKFPNMKELRIQNKGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKM
                     IALADAEFTSYLNNLEKENENVRSNAQ"
     gene            730..1029
                     /locus_tag="PXB38_002528"
     CDS             730..1029
                     /locus_tag="PXB38_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5354767.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          338 a          181 c          199 g          323 t
ORIGIN      
        1 tttgccaata tcctcttttg ttagcggtgc atcagtaatc gctttggctg attgagcatc
       61 aatatatttg tactcacttg tgatgattac aaagtttgtt acctcgccat cggtatcatc
      121 acctgtgcca acaacatact tagcattgag tgagccgtca tcttgagttg agtaacttgc
      181 gatagttgag tacattgggt ttaagatttt gttaaaagtt gtcataattt ttccttttgt
      241 ggattgttga taaaaaaaga ccgcttgtag tcatacaaac ggcttagtag gaagagtaaa
      301 ttgctttaca taatataacc ttttatttat acttcattta taaatagtaa gttataaaag
      361 gttcaaaaat ggcagaccct atagaatggt ctattatcac gactgactgc tttgatgaat
      421 ggttcggtca acaagatgaa agtactcaag aacgtgtctt ggcttgttta atctatctgc
      481 ggaaattcgg ttatagtcta ggcagacctt atgctgatac agtttatcag tctaaattcc
      541 ctaatatgaa agagttacgc attcaaaaca aaggtaagcc aattcgagca ttttatgctt
      601 ttgacccttt acgccaagcg atagtacttt gtgctggcga gaaaggtaaa gacaaaagat
      661 tctatgaaaa aatgatcgct cttgctgatg cggaatttac ctcctattta aataatttag
      721 agaaagaaaa tgaaaacgtt agatcaaatg ctcaatgaac tctctcctga acgccgccaa
      781 aaagtggaag atatggctca agaaatgatt agagagatac aactttcaaa actaagagaa
      841 gagctaaatc tctctcaaca acaattagct acagctctcg gtatttcaca gcctgctatt
      901 gctaaacttg aacagaaaga taacgatcca agattatcca cgctcaaacg ctatattgaa
      961 gcaatgggcg gtaagttaaa acttgccgtt gaattgccta caggcgatga gcgtgtaatt
     1021 aggatttaat tactttgtta a
//
LOCUS       DANLUT010000268         1034 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.269, whole genome shotgun sequence.
ACCESSION   DANLUT010000268 DANLUT010000000
VERSION     DANLUT010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1034
                     /locus_tag="PXB38_002529"
     CDS             <1..>1034
                     /locus_tag="PXB38_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5354768.1"
                     /translation="EESDFVKASENARLQCPHCQALIPPELKRELNIKGVWLKEGQKI
                     DASGQISGESRKSRIASFWLEGPAAAYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTN
                     TDWGLPYLPRSALEQRRSDELMERREEVEEKTVPPQCRFIVAAVDVQGGKNRRFVVQM
                     VGYGENGERWLIDRYNISHTLPDRDGVIEKIDPRIPEDWHILISDVLEKRYVLAHKPS
                     DFMPILAMAVDSGGEEGVTDNAYQFWRKCRRDGYAKRVYLVKGDSTKRQKLITKTHPD
                     NTSRSDRHASARGDVPLYLLQTDYLKDRINNALSRDTVGANYIHFPDWLGEWFFNELT
                     YEERGADGKWR"
BASE COUNT          293 a          269 c          271 g          201 t
ORIGIN      
        1 gaagaaagcg attttgtcaa agccagtgaa aacgcacggc tacaatgccc ccactgccaa
       61 gccttgattc cgcccgaact caaacgagag ctaaacatca aaggcgtatg gctcaaagag
      121 gggcaaaaaa ttgatgcaag cggtcaaatt agtggcgaaa gtcgcaaatc ccgtattgcc
      181 tccttttggc ttgaagggcc agcggcagcc taccaaacgt gggcgcagct cacctacaaa
      241 ctgctcaatg ccgaacacga atatgaaatg actggcagtg aggaaaccct caaagcggta
      301 acaaataccg actgggggtt accttactta ccacgatctg cattagaaca acgccgttct
      361 gatgagttaa tggaacgccg tgaagaggtt gaagagaaaa ccgtgccacc gcaatgtcgc
      421 tttatcgtgg cggcagtcga tgtacagggc ggcaaaaatc gccgttttgt ggtgcagatg
      481 gttggctatg gcgagaatgg cgaacgctgg ttgattgacc gctacaacat ctcgcacaca
      541 ctacccgaca gagatggtgt gatcgaaaaa atcgaccctc gtattcccga agattggcat
      601 attctgattt cagatgtgct ggaaaaacgc tacgtccttg ctcacaagcc gagcgacttt
      661 atgccgattt tggcaatggc ggtggacagt ggcggcgaag agggcgtaac cgacaacgcc
      721 taccaatttt ggcgaaaatg ccgccgagat ggctatgcga aacgggtcta tttagtcaaa
      781 ggtgacagca ccaaacggca aaagctcatc accaaaacgc accccgacaa cacctcacgg
      841 agcgaccgcc acgcctccgc acggggcgat gtgccgttgt atctgctcca aaccgactac
      901 ctcaaagatc ggattaacaa cgccctttcc cgtgatacgg tgggggcaaa ctacatccac
      961 ttcccagact ggctaggcga atggtttttc aatgaattga cctacgagga gcgaggagcc
     1021 gacggcaaat ggcg
//
LOCUS       DANLUT010000269         1034 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.270, whole genome shotgun sequence.
ACCESSION   DANLUT010000269 DANLUT010000000
VERSION     DANLUT010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1034
                     /locus_tag="PXB38_002530"
     CDS             <1..>1034
                     /locus_tag="PXB38_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5354769.1"
                     /translation="EESDFVKASENARLQCPHCQALIAPELKRELNIKGVWLKEGQKI
                     DASGQISGESRKSRIASFWLEGPAAAYQTWAQLTYKLLNAEQEYEMTGSEETLKAVTN
                     TDWGLPYLPRSALEQRRSDELMERREEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQM
                     VGYGENGERWLIDRYNISHTLPDSDGVIEKIDPRIPDDWHILISDVLEKRYPLAHNPN
                     HFMPILAMAVDSGGEDGVTDNAYQFWRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPD
                     NTARSDRHSSARGDVPLYLLQTDYLKDRINNALSRDTVGANYIHFPDWIGEWFFNELT
                     YEERGADGKWR"
BASE COUNT          301 a          251 c          268 g          214 t
ORIGIN      
        1 gaggaaagtg attttgtcaa agccagtgaa aacgcacggc tacaatgccc ccactgccaa
       61 gccttgattg cgcccgaact taaacgagag ctaaacatca agggcgtatg gctcaaagag
      121 gggcaaaaaa ttgatgcaag cggtcaaatt agtggcgaaa gtcgcaaatc ccgcattgct
      181 tccttttggc ttgaagggcc agcggcagcc taccaaactt gggcgcagct cacctacaaa
      241 ctgctcaacg ccgaacagga atatgaaatg accggcagtg aggaaaccct caaagcggta
      301 acaaataccg actgggggtt accttactta ccacgatctg cattagaaca acgccgttct
      361 gatgagttga tggaacgccg agaagaagta gaagagaaaa ctgtaccagc tcaatgtcgc
      421 tttattgtgg cggctgtgga cgtacagggc ggtaaaaacc gccgatttgt ggtgcaaatg
      481 gtcggttacg gtgaaaatgg cgaacgctgg ttgattgacc gctataacat ctcacatact
      541 ttgcccgaca gtgatggcgt gattgagaaa atcgaccctc gcattcccga tgattggcac
      601 atactgattt cggacgtact ggaaaaacgc tacccacttg cccacaatcc aaaccacttt
      661 atgccgattt tggcgatggc ggtggacagt ggaggtgaag atggggtaac cgataacgcc
      721 taccaatttt ggcgcaaatg tcggcgagac ggctatgcga aacgggtcta tttagtcaaa
      781 ggcgacagca ccaaacggca aaagctgatt accaaaactt accccgataa cactgcaaga
      841 agcgacagac actcctctgc tcggggcgat gtgccgttgt acctattgca aaccgactac
      901 ctcaaagatc ggattaacaa cgccctgtcc cgtgatacgg tgggggcaaa ctacattcac
      961 tttcccgatt ggatcggcga atggtttttc aacgaattaa cctatgaaga acgaggagcg
     1021 gacggcaaat ggcg
//
LOCUS       DANLUT010000270         1034 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.271, whole genome shotgun sequence.
ACCESSION   DANLUT010000270 DANLUT010000000
VERSION     DANLUT010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>1034
                     /locus_tag="PXB38_002531"
     CDS             <1..>1034
                     /locus_tag="PXB38_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354770.1"
                     /translation="VTQTEIFAAETDNFALAEKIAKVTARTYAHTVKGNKAVRYYWLR
                     HTRGINVGPFYQQQGVKGESAVDLDARLKELNTELSRNIVNEVFDVAAPARGLELVKT
                     VANLTDKRTKLASSQVYNQADGKLYTWDGTAYSAAVPTEDIIGKLPKSKIDTSLISQL
                     TSADNTANLARRLAETAQANINREVSDRQAAVTTETNNRTKAIQAESVNLTKKIQAEA
                     TARGAAVTQLQNVDAQQAQLISAVTAKANNALSGLEEEKTARANGDKAESQAREALTA
                     RMGAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIGGRNLLRDSEFNAYNKWGS
                     PQIEFAENANR"
BASE COUNT          354 a          207 c          236 g          237 t
ORIGIN      
        1 gttactcaaa ccgagatttt tgcagcggaa actgataatt tcgcccttgc agaaaaaatc
       61 gcaaaagtga ccgctagaac ctatgcgcat acggtaaaag gtaacaaagc cgtgcgttac
      121 tactggttac gccataccag aggcattaat gtcgggccgt tttaccaaca gcaaggcgtg
      181 aaaggagaaa gtgcggttga tttagatgct cgtttaaagg agctgaatac cgagctttca
      241 cgcaatattg tgaatgaggt ttttgatgtt gctgcaccgg cacgaggttt agaactggtc
      301 aaaactgtgg caaacttgac cgataagcgg acgaaactgg catcatcgca agtttacaat
      361 caagctgatg gtaaacttta tacttgggac ggtacagcgt attcagccgc tgtgcctacc
      421 gaagatatta tcggtaaact gccaaaatcc aaaatagata cctctcttat ctcgcaatta
      481 actagtgcag acaatacggc aaatttggca agaagattag cggaaacagc tcaagcaaat
      541 attaatcggg aggtctctga ccgacaagct gcggttacta cggaaaccaa taatcgcacc
      601 aaagccattc aggcagaaag tgtaaattta acgaaaaaaa ttcaagctga agcaaccgct
      661 cgtggggctg ctgttacaca gttacaaaat gttgatgctc aacaagcaca actcatttct
      721 gctgtcacag caaaagctaa taatgcccta tcaggcttgg aagaggaaaa aacagcacga
      781 gcaaacggcg ataaagcgga gtctcaagca cgtgaagcat taacagcaag aatgggagca
      841 gctgaaagca atatcgtaac tattcaacgt acggtagcaa ataatgccca aagcattagt
      901 gaagtcagtc agaatttaaa tgctaagatt gataatatta atatcggcgg tcggaattta
      961 ttaagagaca gcgagttcaa tgcgtacaat aaatggggta gtccacaaat tgaatttgct
     1021 gaaaatgcaa atcg
//
LOCUS       DANLUT010000271         1032 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.272, whole genome shotgun sequence.
ACCESSION   DANLUT010000271 DANLUT010000000
VERSION     DANLUT010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..1018
                     /gene="sohB"
                     /locus_tag="PXB38_002532"
     CDS             <1..1018
                     /gene="sohB"
                     /locus_tag="PXB38_002532"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL5354771.1"
                     /translation="LLELLTVFGIIAVVVMLILESKKQNENGSISITNLSEKYKEQQK
                     SLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSRLFVLNFNGDMMA
                     HEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQRLRDRNIYLTAA
                     VDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKHDIDVDVMTAGEY
                     KRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARRRPQLDIEQVATGEHWFGQQAIE
                     LNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSAENLLAKILHKSR
                     STLM"
BASE COUNT          338 a          171 c          256 g          267 t
ORIGIN      
        1 tttattagag ttattaactg tatttggcat tattgcagtg gtggtgatgc tgattttgga
       61 atcgaaaaag cagaatgaaa acggctcaat ttcaattacc aatttatctg agaaatataa
      121 agagcagcaa aaatctcttt ccggcttttt tctaagtgaa gaagaattaa aacatcagga
      181 aaagcaggag aaaaaagtag caaaagagaa agctaaagca gaaaaaaaac gcttaaaagc
      241 aggcgaagaa tgtgtagaaa gcccttcccg tttatttgta ttgaatttta atggcgatat
      301 gatggctcac gaagtaaatt ccctacgccg tgaaattgat gcggtaatta gcctcgcgaa
      361 tccggaaaaa gatgaagttt tacttaaact tgaaagtccg ggcggagtgg tgcacggtta
      421 tggattggct gcttcgcagt tacaacgttt gcgtgatcgc aatatttatt taaccgcagc
      481 ggtagataaa gtagctgcca gcggtggtta tatgatggcg tgtgtggcga ataaaattgt
      541 ctctgcccca tttgcggtga ttggctcagt gggggtggtg gctcaggtgc cgaatatcca
      601 ccgcttactg aaaaaacacg atattgatgt ggatgtgatg actgcaggtg aatataaacg
      661 cacggtgacg ctggtgggag aaaataccga aaaagggaaa cagaaattcc agcaagaact
      721 ggaagaaacg cactctctgt ttaagcaatt tgtggctcga cgccgcccac aactggatat
      781 tgagcaggtt gcaacaggcg agcattggtt tggtcagcaa gcgattgagc taaatttggt
      841 tgatgagatt gcaaccagtg atgatctgct cctcaatgca attaaggaaa aagaagtgat
      901 cgagctaaaa tataaagaga agaaaaaact tgctcagaaa ttgggttctc aattcgagca
      961 atcagcagag aacctgctcg ctaagatttt acataaaagt cgttcaacgc tgatgtagcg
     1021 tatatattat ta
//
LOCUS       DANLUT010000272         1030 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.273, whole genome shotgun sequence.
ACCESSION   DANLUT010000272 DANLUT010000000
VERSION     DANLUT010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..372
                     /locus_tag="PXB38_002533"
     CDS             <1..372
                     /locus_tag="PXB38_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5354772.1"
                     /translation="LVTCPDIPEMASVGEDLEEALLEAQDGLATALEFYFDDRREIPM
                     PSPIKEGQHTVNLTVLQSMKVFLLNEMIKQGVRKAEMARRLDVHLPQIDRLLDFNHST
                     KVEFVEKAYGKLNQRFTILPH"
     gene            complement(439..744)
                     /locus_tag="PXB38_002534"
     CDS             complement(439..744)
                     /locus_tag="PXB38_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL5354773.1"
                     /translation="MRKPAHPGQVLLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
     gene            complement(753..1028)
                     /locus_tag="PXB38_002535"
     CDS             complement(753..1028)
                     /locus_tag="PXB38_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5354774.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
BASE COUNT          337 a          208 c          164 g          321 t
ORIGIN      
        1 cttgtgactt gccctgatat tcctgaaatg gcaagcgtag gtgaggactt agaagaagcc
       61 ctattagaag cacaagatgg cttagccaca gcccttgaat tctattttga tgatagacga
      121 gaaataccaa tgccaagccc aattaaagag ggacaacata cggttaatct taccgtgctg
      181 caatcaatga aagtatttct cttaaatgaa atgattaaac aaggtgtacg taaagcagaa
      241 atggcaagac gattagatgt acacttacca cagatagatc gcctattaga ttttaatcat
      301 tccacaaaag tagaatttgt tgagaaagcc tatggtaagc taaatcaacg ctttactatt
      361 ctccctcact aataaaataa ccgcctacgg gcggttttct tttcctaaga acaataaaac
      421 cctccgaaga gggcattatt aagcgtgagc agtttctcca taatttccac caaaatgaaa
      481 aggcataaca ggatttaacc gctgctgctt taactcccat aaatcatatt tggtttgtaa
      541 gttgagccat aacttagccg tactaattcc tgcttcttct aaacttaacg ccaaatttgc
      601 agtcattggt gttttgccgt gtaatactct tgataaagtt tcacgagaaa acccaagatg
      661 atctgctaat tctttaattt tgatgttatt tggttcaata aacccatcta ataaaacttg
      721 acctggatgt gctggtttac gcataactcc ccctaatgat aatcttcata attcaaaata
      781 taagcatcgc catttacaaa ttcaaatgta atccgccagt tgccattaac cgtcatagaa
      841 taaatgcctt ttcgatttcc ttttaactcg tggcattggt aaaaaggcat aaattcatca
      901 atactttctg ctgaatcaat caaatctaaa ataccatcga ttttacgctg atgattaagc
      961 tgaatacctt ttgttatccc tttttcaaaa tattgtttta agcctttatg cttgaaactc
     1021 ttaatcataa
//
LOCUS       DANLUT010000273         1028 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.274, whole genome shotgun sequence.
ACCESSION   DANLUT010000273 DANLUT010000000
VERSION     DANLUT010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..981)
                     /gene="rfbB"
                     /locus_tag="PXB38_002536"
     CDS             complement(<1..981)
                     /gene="rfbB"
                     /locus_tag="PXB38_002536"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL5354775.1"
                     /translation="MSLNVLITGGAGFIGSALIRFLAKQTDHHIINVDKLTYAANLAS
                     IKTVQNSERYYFEQVDICASGQISEIFCKYQPDAVMHLAAESHVDRSIKSAGEFIQTN
                     IVGTYSLLEVTRQYWEHLPEPRKSAFRFIHISTDEVYGDLPLTAEPSAENLPYAPSNP
                     YSASKASADHLVRAWYRTYGLPAIITNCSNNFGPYQYPEKLIPLMISNALQGKALPIY
                     GDGLQIRDWIFVEDHIRALYDVLIKGKLGASYNIGSHQEKSNIEVVYSICELLEELVP
                     NKPKNVKKYVDLIRYVQDRPGHDVRYALDSTKIQKELGWKPQETFESGLRK"
BASE COUNT          341 a          201 c          177 g          309 t
ORIGIN      
        1 tttacgaaga ccactttcaa atgtctcctg aggtttccag cctaactctt tttgaatttt
       61 agttgaatct aatgcgtagc ggacatcatg cccgggccgg tcttgaacat agcgaattag
      121 atcaacatat tttttaacat tcttaggctt atttggcact aactcctcta acagctcaca
      181 aattgaataa accacctcaa tattgctttt ttcttgatgg gagccaatat tataacttgc
      241 gcctaattta cctttaatta aaacatcgta taaagcacga atgtgatctt cgacgaaaat
      301 ccaatcccga atttgcaaac catcaccata aataggcaaa gcctttcctt gcaatgcatt
      361 tgaaatcatt aatgggatca atttttcagg atattgataa ggaccaaaat tattggagca
      421 atttgtaata atcgctggta aaccataagt tctataccaa gcacgtacta aatgatcagc
      481 cgatgctttg gaagcagaat aagggttact tggggcataa ggtaaatttt cagcagatgg
      541 ttcagctgtt aatggcaaat caccatacac ttcatctgtt gaaatgtgga taaaacgaaa
      601 cgctgatttt cgaggttcgg gcaaatgctc ccaatattgt cgagtgactt ctaacagaga
      661 ataagttcca acaatattag tttgaataaa ctcaccagca ctcttgattg agcgatcaac
      721 atggctttca gcagccaaat gcatcaccgc atcaggctga tatttgcaaa aaatctcgga
      781 aatttgacca cttgcacaaa tatcaacttg ctcaaaataa taacgctcag aattctgtac
      841 ggttttgatt gaggctaaat ttgcagcata agtgagctta tctacattga ttatatgatg
      901 gtctgtttgc ttagctaaaa aacgaattaa cgcggagccg ataaatccgg ctccacctgt
      961 aattaataca tttaaactca tcatataact aataggctaa ggaaataaat atcttaaaaa
     1021 ggaatttt
//
LOCUS       DANLUT010000274         1011 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.275, whole genome shotgun sequence.
ACCESSION   DANLUT010000274 DANLUT010000000
VERSION     DANLUT010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.275"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..597)
                     /locus_tag="PXB38_002537"
     CDS             complement(<1..597)
                     /locus_tag="PXB38_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5354776.1"
                     /translation="MLIEWRNQIVGDKIKAVTWNNYVRHLKALYNFGISQGLLNINRN
                     PFNQLFIRESKRRKKTYSTEQLHKIDHILNNNVVLPDFLKPSWFVLAIIMTLRCTGIR
                     RGQLVKLKISDVDLSNRTIYISPEINKNHDYHIVPISDSLYIHIERLITELKIRKQTD
                     NCQLFNLNLFSRCSRRRGQPMSQNQLTHIFRHISDLVGF"
     gene            complement(753..>1011)
                     /locus_tag="PXB38_002538"
     CDS             complement(753..>1011)
                     /locus_tag="PXB38_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding domain-containing protein"
                     /protein_id="HDL5354777.1"
                     /translation="QETGQPYDKETINNLQYDFQGLGIHSPKNTMTNGKPDTINFWKC
                     DVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHCLTLQKEET"
BASE COUNT          309 a          167 c          175 g          360 t
ORIGIN      
        1 aaaaccgacc aagtcagaaa tatgccgaaa tatatgcgta agctgatttt ggctcatcgg
       61 ctgccctctt cttcgagagc atcgagaaaa taaattgaga ttgaacaatt ggcaattatc
      121 tgtttgtttt cttattttta attcagtaat aagcctttct atatgaatat aaagtgaatc
      181 tgaaatcggt acgatatggt aatcatgatt tttattgatt tccggcgaaa tataaatcgt
      241 cctattagaa agatctacat cactaatttt cagtttcact aattgtcctc gccgaatccc
      301 cgtacatctc aatgtcataa taattgcaag gacaaaccag cttggtttta gaaagtcagg
      361 taatacaacg ttattattga gtatgtggtc tattttatgt aattgttcgg ttgaataagt
      421 tttctttctc cttttcgatt ctcgaataaa taactgatta aatggatttc gatttatatt
      481 aagtaatcct tgcgatatac caaagttata taaggctttt aaatgtctga cataattatt
      541 ccacgttact gctttgattt tatcgccaac aatttgatta cgccattcaa tgagcatatc
      601 ggtggtaatg tcattggcat ttaactttgg ataacgcttt ttgataattc ggattacgtt
      661 gttgtagctc cgtttggtat ccggacgaag atagtgacga tagaaaaaaa aatcggtcta
      721 gtagcgaatc aaaagagata gaagttatca ttttaagttt cctctttctg taaagttaaa
      781 cagtgattat ttaatagtac cttatcccca aaaaagagac gggtattttt tatcaaatat
      841 cctgttaaag aggaagtctt tctcggtcca atgacatcac atttccaaaa attgatggta
      901 tccggcttac cgttggtcat tgtgttttta ggtgaatgaa tccctaatcc ttgaaaatca
      961 tactggagat tattaattgt ttccttatca taaggctgtc cagtctcttg c
//
LOCUS       DANLUT010000275          991 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.276, whole genome shotgun sequence.
ACCESSION   DANLUT010000275 DANLUT010000000
VERSION     DANLUT010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..513
                     /locus_tag="PXB38_002539"
     CDS             <1..513
                     /locus_tag="PXB38_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5354778.1"
                     /translation="VNILDAIATDDFELLEKLFKQGEKSYLETSPKEGWNWLHKSLLG
                     FESDEPSGKMVEYLISKGITVNAQDCYGMTPLHYAMRAKNVDAAIALLNAGADPNIPN
                     QDNLIPLRMCIRYPERLDLLELMLKKGGDVHYFNGQDYLLEGLKDFKGSDPTYKEFFA
                     KMEEYAGSKE"
     gene            539..718
                     /locus_tag="PXB38_002540"
                     /pseudo
     CDS             539..718
                     /locus_tag="PXB38_002540"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            720..>991
                     /locus_tag="PXB38_002541"
     CDS             720..>991
                     /locus_tag="PXB38_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5354779.1"
                     /translation="MELSLLNELELEELIVEANSNDNINFLNEVFLDKKVADIKKITD
                     FDKWNYLHRILCYFNPSVELVRFYISNGLDVNAQDKYGMTPLHYAM"
BASE COUNT          368 a          108 c          208 g          307 t
ORIGIN      
        1 gttaatattc tggatgcaat cgctacagat gattttgagt tattggagaa attattcaaa
       61 caaggggaaa aaagctattt agaaacatca cctaaagagg gttggaattg gctacataaa
      121 tctttacttg gatttgaatc tgatgaacct tccggaaaaa tggttgagta tttaattagt
      181 aaaggaatta ctgtcaatgc ccaagattgc tacggaatga cccctttaca ttatgcaatg
      241 agggcaaaga atgttgatgc agcgatagca ttattaaatg cgggggcaga tccgaatatt
      301 ccaaatcaag ataatttaat accattgaga atgtgtattc gttatcctga aagactagat
      361 ttattggaat tgatgttaaa aaaaggtgga gatgttcact attttaatgg gcaagattat
      421 ttattagaag ggttaaaaga ttttaagggt agtgatccaa catataaaga atttttcgca
      481 aaaatggaag agtatgctgg aagtaaagaa taattcggga gcatagaagt tatcattagc
      541 ggcaaaagaa ttaaattgga gtcaaaaaca atttaatgat tatgttaatg caagaccgga
      601 gaggtttaga ttggaaaata tgtctgaaaa tcgtagccat aagaatgaga tgcctggaaa
      661 aggtgatatt cttgagatca ggcaagatat gcagaagttt atgaatggag ataaatagaa
      721 tggaattatc attactaaat gaattagaac ttgaagagct tattgtagaa gctaactcta
      781 atgacaatat taatttttta aatgaggtat tcttagacaa aaaagttgct gacataaaaa
      841 aaataactga ttttgataag tggaattatt tacataggat tttgtgttat tttaatccaa
      901 gcgttgagct tgttaggttc tatatatcta atggattaga tgttaatgct caagataaat
      961 atggaatgac ccctttacat tatgcaatga g
//
LOCUS       DANLUT010000276          982 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.277, whole genome shotgun sequence.
ACCESSION   DANLUT010000276 DANLUT010000000
VERSION     DANLUT010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(58..261)
                     /locus_tag="PXB38_002542"
     CDS             complement(58..261)
                     /locus_tag="PXB38_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354780.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            complement(258..749)
                     /locus_tag="PXB38_002543"
     CDS             complement(258..749)
                     /locus_tag="PXB38_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5354781.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFADD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEAEQVIEPPTLVENNG
                     WISVKDRLPEIRKEVLITNNFIMIAQFNGESWFKPGGFLGIQPVYGVTHWQPLPEPPK
                     EEK"
BASE COUNT          261 a          202 c          183 g          336 t
ORIGIN      
        1 ttttgtgggg ttgagccgtt aattaaattg cggtcttccg cccattgttc gatgttttta
       61 attagttgtt gcattgttta gtcctctcat ttctttcatt gcttcatcaa tcgccgtgcg
      121 taaatcggca tttcttgccc aatgaaaata ctgctcgtgc ggtttggtat agctagcaat
      181 aataaattcg tccaccaaat cagaatatcg gacatctaat ttgcgttggg cgataaagtc
      241 taagcgttcg gtgtcggtca tttttcctcc tttggtggtt cgggaagtgg ttgccagtgg
      301 gtaacaccat agacaggctg aatacctaag aatccacccg gcttgaacca gctctcgcca
      361 ttgaattgag caatcataat aaaattgttt gttatcaaga cttctttgcg gatttctggc
      421 aatctgtctt tgactgaaat ccagccgttg ttttctacaa gtgttggtgg ttcaataact
      481 tgttcagctt ccccaaataa ctctgattct ctttcttcat cggttagtgg gcggatatct
      541 gattttgctc tacctaaaac aacaccataa actgcatagg gtaaatcata ggcttcatag
      601 ctttcgtgat catccatgtc atccgcaaac tcataggctt cagtagcacc atttaaacag
      661 ctttgttttg cttgctctaa ggtttcgtgc agatttagga tatgtatatc atttgataca
      721 tccaccgaaa aaaatttgtc ttcattcatt ttctttctcc aaaataccaa tagttgagag
      781 aataataagc atactatctc atgctattct taagtgcatc taaccacgct ccagcatctt
      841 cggctgaagc gaaatataac ccttgatcaa atagtttttc tatataagaa tgtgtaggga
      901 aatttgattt tatcacattg aaattatcgc caataaacca cattccatct cttggttctt
      961 ttaatggaca aggaagagtg ag
//
LOCUS       DANLUT010000277          971 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.278, whole genome shotgun sequence.
ACCESSION   DANLUT010000277 DANLUT010000000
VERSION     DANLUT010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..320
                     /locus_tag="PXB38_002544"
     CDS             <1..320
                     /locus_tag="PXB38_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354782.1"
                     /translation="YLEEYNDLGTIRYKFQEENLYGFLRDGATLVANGIVNEPSVDCF
                     SQEIAQFTGCHIFSSLYIAFNTQRSFKSHWDSRDIFAVQMQGKKRWIIHTPTFKKTIV
                     YAS"
     gene            310..960
                     /locus_tag="PXB38_002545"
     CDS             310..960
                     /locus_tag="PXB38_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL5354783.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYHKFIENFYDQKRVEKPLNLETLGNYQYDSISENQKISFKAKNHYFGYENKIISN
                     GYGISLDEEFGDVIKFLKQGQEVSLNDILEKISEDKRDKVSQLIWQLSYIGVLKLS"
BASE COUNT          336 a          119 c          182 g          334 t
ORIGIN      
        1 attatttaga agaatataat gatctaggta ctattcgtta taaatttcaa gaagaaaatt
       61 tatatggttt tttaagagat ggggcaacat tagtcgcaaa tggtattgta aatgaaccaa
      121 gtgttgattg cttctctcaa gagatagctc aatttacagg ctgtcatatt ttttcaagtt
      181 tatatattgc gtttaatact caaagatctt ttaaaagcca ttgggatagt cgtgatattt
      241 ttgcagttca aatgcagggt aaaaagcgtt ggattattca cactccaaca tttaaaaaaa
      301 ccattgttta tgcatcgtag taaagatatg cctgaatatg ctcctaatct tgatgatgta
      361 tatatggata ttgtattaga agctggagat gttctttatt tacctcgtgg ctggtggcac
      421 gatcctattc ctgttggaga agaaactgtg catttagctg taggcatttt tcctgcttat
      481 actcataact atctgacttg ggtatctcaa aatatggttg agaaagaaat tgcccgagct
      541 tctttatcgc attatgagtc agataaagag ttgatagcac agttggcaga acaaacagca
      601 gaatatatta aagataaaga gaattatcat aaatttatag agaattttta tgatcagaag
      661 cgggttgaaa agccacttaa tttggaaact ttaggaaatt atcaatatga ttctatttcg
      721 gaaaatcaaa aaatttcatt taaagccaaa aatcactact ttggttatga aaataagata
      781 atttcaaatg gatatggtat ttctcttgat gaagagtttg gagatgttat taaatttctt
      841 aaacagggtc aggaagtttc attaaatgat attttagaaa aaatatcaga agataaacga
      901 gataaagttt ctcagcttat ttggcagtta tcttatattg gtgtgctaaa attgagttaa
      961 ataagtaagg t
//
LOCUS       DANLUT010000278          931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.279, whole genome shotgun sequence.
ACCESSION   DANLUT010000278 DANLUT010000000
VERSION     DANLUT010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            246..845
                     /locus_tag="PXB38_002546"
     CDS             246..845
                     /locus_tag="PXB38_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354784.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
BASE COUNT          320 a          141 c          158 g          312 t
ORIGIN      
        1 atggtaaatt ttcattcacg gtaacagaaa agtatgaagg acaacttgta tttatcatta
       61 gtatgttaca ttcagttcac cgaaaacaag caacaggtta taaaacgaat attcccaatc
      121 ttattcattt agaaaatgtt tcgatcaacg ataaaacgat ttcaggagaa gttgtttgta
      181 tttttccttt tagtctaccg gctgatgatt cagattatat tcagattgta tatggagcat
      241 attaaatgag ttacggacta tctactttta acatcaatga aaatttcaga agtttatcct
      301 tacaaagaaa aggacgagct aacttttcta ataaaattgc aactattcag gcagcgtcag
      361 atgaaattat tgtcattaaa tattctgatg ggcaagtatg tttgctatat cgagaaaatg
      421 gtattgccac attagctaca gaaaacgcaa catttgctga atatctcatt tttagtacaa
      481 atgtaccgaa aagcggaggt tacggcatag aggtttataa ctcagcagga aatgttgtat
      541 tttcatcaaa ccacaaattt ttaagaccta ttgaatatgt cgatctaaat ccatcaaaaa
      601 atgtttttag atttacaggg caagcaaata ggcaatatgg cattatctta tccaattttg
      661 gctttgattt tgtcattaac tacgataacg gatattcaac atctagatct gccaaagtaa
      721 gtggtaattt tattgaattt gggttctgta aataccatta ttctggtttg tataagacgg
      781 gaatgagtta taattcaaaa gcaatgtatt ttaatgctct ggttgtagat ataacaggct
      841 attaaacatt aaacgccttc atttaataga ggcgaactaa aattctgatt acacattcat
      901 cgccgcttgt agcaatacaa gcggtctttt t
//
LOCUS       DANLUT010000279          885 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.280, whole genome shotgun sequence.
ACCESSION   DANLUT010000279 DANLUT010000000
VERSION     DANLUT010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            27..206
                     /locus_tag="PXB38_002547"
                     /pseudo
     CDS             27..206
                     /locus_tag="PXB38_002547"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
     gene            219..717
                     /locus_tag="PXB38_002548"
                     /pseudo
     CDS             219..717
                     /locus_tag="PXB38_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
     gene            733..>885
                     /locus_tag="PXB38_002549"
     CDS             733..>885
                     /locus_tag="PXB38_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction endonuclease subunit R"
                     /protein_id="HDL5354785.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDV"
BASE COUNT          288 a          155 c          188 g          254 t
ORIGIN      
        1 acttaattag cagagctcat tatgatatgg caacaaatga agactctgct agtgaacatc
       61 tagaattatt tggggaggat attgcagaag attcatttga ttatcctaaa cctgaaaaat
      121 taatccaatt tgtattagaa gcatcgactg aaccatatga tctcgtcctc gacagctttc
      181 ttggctcagg tacaactgca gcagttgctc ataaaacgaa ccgtcgttat atcggtattg
      241 agattggcga acatgctaaa acccatgttg tcccacggtt gaaaaaagta attgaaggtg
      301 agcaaggcgg tatttcaaaa gcagtaaatt ggcaaggtgg tggatcgttt cgcttttgtg
      361 agttaggcga ggaagtattt gacgcattcg gttcacttaa tccgaacatt cgttttgacg
      421 atttagccgc ccatatttgg tatttagaaa atcatttccc tttgcaaaaa aacagcgaaa
      481 aatcaccgct tgtcggcact ttcaacggca aagcctacta ttttaggcga taaacgtccg
      541 cagagtggta atgttctgac acgaaaatta atggcggagt taccatactt tgctgaattt
      601 attcaacagg gaatggatat tgtggtatat ggcgaagcgt gccgtttagg agaagtgcag
      661 ttagctgaaa agaaaattac atttaaacag attccatatg atgtaatgtc tcgttaatag
      721 taggagaaaa aaatgaaatt aaaaaattac caaaatgagg cattaaaccg tgtcagccac
      781 tatttttcgg cttgtttgca atctgatgca aaaaccgcat ttagccaaat tcaacctgaa
      841 tatagttaca agatcccaag tgaacacagt aatttgcgtg atgtg
//
LOCUS       DANLUT010000280          851 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.281, whole genome shotgun sequence.
ACCESSION   DANLUT010000280 DANLUT010000000
VERSION     DANLUT010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>851
                     /locus_tag="PXB38_002550"
     CDS             <1..>851
                     /locus_tag="PXB38_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="group II intron reverse transcriptase
                     domain-containing protein"
                     /protein_id="HDL5354786.1"
                     /translation="IDFARIAFDSIRSAQNCTVLGLDISKFFDHIDHKILKDMWCKVL
                     GVPSLPEDHHSVFKAITKFVKVDRDTVFEFFNISLHNPRKNGKNRICSPREFREYRKL
                     KKPDLFNDNPAFFINKGQKGIPQGSPISALLSNIYMLEFDVLVKEKIMECKGSYFRYC
                     DDILCIIPNEYEEFILDYITGEIKSKLKLEINKDKTEVVKFQYCNRTKKIINEKKLQY
                     LGFILHNNSISIRSSAFTRYSNKMKRGVSLAKQTQGKYNRIRIRRGVAIKGIYKRKLF
                     SKYSHFG"
BASE COUNT          312 a          105 c          156 g          278 t
ORIGIN      
        1 atattgattt tgccagaatc gcttttgata gtattcgaag cgctcaaaat tgcacggttt
       61 tagggctaga tatatctaag ttctttgacc atatagacca taaaattctg aaagatatgt
      121 ggtgtaaagt tttgggtgta cctagtttac ctgaagacca tcattctgta tttaaggcta
      181 ttactaaatt cgtaaaagta gatagagata ctgtatttga attctttaat atctcccttc
      241 ataatcctag gaaaaatggg aagaatagaa tttgtagccc tcgggaattt cgagaatata
      301 ggaaattaaa gaaacctgac ttatttaatg ataatccagc tttttttatt aataaaggcc
      361 agaaagggat tcctcaaggt tctccaataa gtgcattgtt atccaatatc tatatgttag
      421 agtttgatgt gttagttaaa gaaaagatta tggagtgcaa agggagttat tttcgttatt
      481 gtgatgacat tctatgtatc attcctaatg aatacgaaga atttattctc gattacatca
      541 ctggggagat aaaaagtaaa ttaaaactag agataaataa ggataaaact gaggttgtta
      601 aattccaata ttgtaataga acaaaaaaaa taattaatga aaagaagtta caatatcttg
      661 gttttatatt gcataataac tctattagta ttagatcatc ggcatttaca cgatattcaa
      721 ataaaatgaa acgaggggtt agtctagcta agcaaactca gggtaaatat aataggataa
      781 gaataagacg aggggtagct atcaaaggca tttataaaag aaagctattt tctaagtatt
      841 ctcatttcgg a
//
LOCUS       DANLUT010000281          845 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.282, whole genome shotgun sequence.
ACCESSION   DANLUT010000281 DANLUT010000000
VERSION     DANLUT010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            57..>845
                     /locus_tag="PXB38_002551"
     CDS             57..>845
                     /locus_tag="PXB38_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5354787.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRVESKNIESQAEEKSAEVKAQEPIANTEVSKEMKESQTVEQESNKTETLEVDKTQ
                     SSVANEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDI"
BASE COUNT          313 a          129 c          169 g          234 t
ORIGIN      
        1 ccatatttaa ggctataata atgagtagga attttagatt taaggacaca aaaataatga
       61 gctataaagt ggtcttttcg ctgttgtttt ctctattttt atcaacagca aatgcaaatt
      121 ggacaaaaat taatgatgtg aattatacgt gggggccatt taatatttac catattacgc
      181 tttttactga gagcggtact tatgtagaag gtacacgtcc tttaatgctt actctacaat
      241 ataaaaaacc gtgggaaggg cgcgattttg cggtttcttt agcaagaact tggaataatt
      301 taggcattaa gctacctgaa aaagagctag atgaggttat tacccacctg agaaaaactt
      361 tcccagatat taagcctgaa gatacattgc actatattgc attagaagat agaggttatt
      421 ttattttaaa tgataaagta gtctctgatg tgtttaataa agctttcaat gatgccattg
      481 tagcaatttg gcttgatccg aaaatggata ttagccatca attacttgat ccctcttata
      541 agccaagagt tgagtcaaaa aatatagaat cacaagctga ggaaaaatca gcggaagtga
      601 aagcacaaga acctattgcc aatactgagg tttctaagga gatgaaagag tctcaaactg
      661 tagagcaaga atcaaacaaa acagaaaccc tagaggtaga taagacccaa tccagtgtgg
      721 caaatgaagc gactcaaccg gtagagaata aagataagaa agagccagaa aagctagaag
      781 aaaaaccaaa ggagatgaag attgaaaatc cggaagtgtt catttcaccg atttatgatg
      841 atatc
//
LOCUS       DANLUT010000282          842 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.283, whole genome shotgun sequence.
ACCESSION   DANLUT010000282 DANLUT010000000
VERSION     DANLUT010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>842
                     /locus_tag="PXB38_002552"
     CDS             <1..>842
                     /locus_tag="PXB38_002552"
                     /inference="COORDINATES: protein motif:HMM:NF023638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354788.1"
                     /translation="PETLSRAAAEPCLRYYKNKLFLTTRSQNPNVGSLLIRCDLNGEN
                     ISSFNISAEKIHYTNMPFHIENDVIYMFAAERAENEWETGQSDKSGNRYRANRPRMFL
                     LKHRLSDWGKPEKTEVQVISQGIYSGEAANSACGVGSIVYKDGILHCLFGDEDYRNSH
                     SLTENARKANNAHIDSGYQPEIYSLRIVIDKQMAGVTDKPLRGADNLHLPVFRGTDGV
                     RTVQSPVRFSEKVEFDNAVALAVATVGRILASSKAGADYAMYGTDYLNDANRLYLSST
                     HQAN"
BASE COUNT          258 a          159 c          202 g          223 t
ORIGIN      
        1 cctgaaacgt taagtcgggc tgccgctgag ccttgtttac gatattacaa aaacaaatta
       61 tttttaacga cccggtcaca aaatccgaat gtagggtcac ttctaattcg ttgtgactta
      121 aacggggaaa atatcagttc attcaatatt tccgcggaaa agattcacta caccaatatg
      181 ccatttcata ttgagaatga tgtgatttat atgttcgccg ccgaacgagc ggaaaatgaa
      241 tgggaaacag ggcaaagcga taaaagtggc aaccgctatc gagcaaatcg tccacgaatg
      301 tttttgctta agcatagatt aagcgattgg ggcaaaccgg aaaaaacaga agttcaggtt
      361 atttcgcaag gcatttattc cggcgaagca gctaacagtg cttgtggtgt tgggtcaatc
      421 gtttataaag atggtatctt gcattgcctc tttggtgatg aggattaccg taatagccat
      481 tctctcacag agaatgcaag aaaagccaat aacgcacata ttgatagtgg ttatcaacct
      541 gaaatttact cattaaggat tgtaattgat aagcagatgg caggggtgac agacaagcct
      601 ctaagaggtg cggataatct gcatctacct gtgtttagag gcactgacgg tgttcgaact
      661 gttcaaagtc cggttagatt tagcgaaaaa gtcgaatttg acaacgctgt tgcattggcg
      721 gtggcgactg ttggaagaat actggccagc agcaaagccg gtgcagatta tgcgatgtac
      781 ggcacggatt atcttaatga tgcgaatcgg ctttatctgt caagtacaca ccaagctaac
      841 ag
//
LOCUS       DANLUT010000283          833 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.284, whole genome shotgun sequence.
ACCESSION   DANLUT010000283 DANLUT010000000
VERSION     DANLUT010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>833
                     /locus_tag="PXB38_002553"
     CDS             <1..>833
                     /locus_tag="PXB38_002553"
                     /inference="COORDINATES: protein motif:HMM:NF023638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354789.1"
                     /translation="SETLSRAAAEPCLRYYKNKLFLTTRSQNPNVGSLLIRCDLNGEN
                     ISSFNISTEKIHYTNMPFHIENDVIYMFAAERAENEWETGQSDKSGNRYRANRPRMFL
                     LKHRLSDWGKPEKTEVQVISQGIYSGEAANSACGVGSVVYKDGVLYCLFGDEDYRNSH
                     SLTENARRANNAHIDSGYQPEIYALRIVLDKTLSGLTDRPLKGADNLHLPVFRGVNGV
                     RTIQSPIEFDETTLFNKLASFVSMQVQKILATGDDYGMYGTDYLNGVNRLYLSSTHKA
                     N"
BASE COUNT          258 a          163 c          189 g          223 t
ORIGIN      
        1 tctgaaacgt taagtcgggc tgccgctgag ccttgtttgc gatattacaa aaacaaatta
       61 tttttaacga cccggtcaca aaatccgaat gtagggtcac ttctaattcg ttgtgactta
      121 aacggggaaa atatcagttc attcaatatt tccacggaaa agattcacta taccaatatg
      181 ccatttcata ttgagaatga tgtgatttat atgttcgccg ccgaacgagc ggaaaatgaa
      241 tgggaaacag ggcaaagcga taaaagtggc aaccgctatc gagcaaatcg tccacgaatg
      301 tttttgctta agcatagatt aagcgattgg ggcaaaccgg aaaaaacaga agttcaggtt
      361 atttcgcaag gcatttattc cggcgaagca gctaacagtg cgtgcggtgt ggggtcggtt
      421 gtgtataaag atggggtgct ttattgcttg ttcggcgatg aggattaccg caacagccac
      481 tcactcacgg aaaacgctag aagagctaac aacgcccaca ttgatagcgg ctaccagcca
      541 gagatttatg ctttacgtat tgtgttagat aaaacgctat caggtttaac tgatagaccg
      601 ttaaaaggag cggataattt acatttaccc gttttccgtg gcgtaaatgg cgtgcggaca
      661 attcaaagcc ccatagaatt tgacgaaaca acactcttta acaagttagc ctcttttgtg
      721 tctatgcaag tccaaaaaat cttagctaca ggcgatgatt atggtatgta cggcacagat
      781 tatctaaatg gcgtaaaccg cctttatttg tctagtacac ataaggcaaa tag
//
LOCUS       DANLUT010000284          822 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.285, whole genome shotgun sequence.
ACCESSION   DANLUT010000284 DANLUT010000000
VERSION     DANLUT010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.285"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            12..530
                     /locus_tag="PXB38_002554"
     CDS             12..530
                     /locus_tag="PXB38_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL5354790.1"
                     /translation="MQKKLFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIA
                     EIEKTVELLLNQTEVLYSEFYAEKLVKQFDALKNAVEKIQSKPESAQFHSSYQFSPNI
                     HRLAPNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLK
                     AIENLEQELLFK"
     gene            complement(534..607)
                     /locus_tag="PXB38_002555"
     tRNA            complement(534..607)
                     /locus_tag="PXB38_002555"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(573..575),aa:Cys,seq:gca)
     gene            complement(631..706)
                     /locus_tag="PXB38_002556"
     tRNA            complement(631..706)
                     /locus_tag="PXB38_002556"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(671..673),aa:Gly,seq:gcc)
BASE COUNT          292 a          160 c          147 g          223 t
ORIGIN      
        1 taacatcaac catgcaaaaa aaacttttta tcgcccaaat aaaacaaaac ctctcggaat
       61 taaatgtatt ttcaacggat aatatttttc tgaattcacc ctatttctca cagcaaaccg
      121 gtttggtgag tgtgttcatt gctgaaattg aaaaaacagt tgagctatta ttgaaccaaa
      181 ctgaggtgct atatagtgaa ttttacgctg aaaaattggt taaacaattt gatgcattaa
      241 agaatgccgt agaaaaaatc caaagtaagc cagaatcagc tcaattccat tcttcctatc
      301 aattttctcc aaatattcat cgtttagcgc ccaacaaacg cttacaagaa taccgtaaag
      361 cgttacgtgc attaaatgag aaaattagct ggctagttga acaaaattta aatacacaaa
      421 atgaggcaac taaacaaacc ctgcaaaacc aaatcacaga gacagaatat cgcaaaatga
      481 aatgcttaaa ggcgattgaa aatttagaac aagagttgct atttaaatag tgatggaggc
      541 gtgtcccgga gtcgaaccga gctacatgga tttgcaatcc agtgcataac cgctttgcta
      601 acacgccata agatttgaag atttggaaat tggagcggga aacgaggctc gaactcgcga
      661 ccccgacctt ggcaaggtcg tgctctacca actgagctat tcccgcattt gaagtctcac
      721 aacattgcgc tgtggaacgt ggtgcatttt acggatttat cattttatgt caatgctaaa
      781 tttagcatta tagattcaaa tgctgaaaaa aaactcacta tt
//
LOCUS       DANLUT010000285          818 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.286, whole genome shotgun sequence.
ACCESSION   DANLUT010000285 DANLUT010000000
VERSION     DANLUT010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.286"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            6..773
                     /locus_tag="PXB38_002557"
     CDS             6..773
                     /locus_tag="PXB38_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5354791.1"
                     /translation="MSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNAEQ
                     DVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGL
                     VFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDK
                     LTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNT
                     VSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
BASE COUNT          267 a          132 c          185 g          234 t
ORIGIN      
        1 tgaacttgag taatgcatta aaattaatca aatataatga attagacgtg ctagaagtta
       61 atcacaataa attcaaagct aaaattgcat tacaaggagc acaattgcta agttggcagc
      121 cgtataatgc agagcaagat gtgctgtggt taagtgagat agaaccgttt agaattggct
      181 ctgcgattcg tggcggtata ccaatttgtt atccgtggtt cggttcaata aaagagcctg
      241 cccacggcac agctcgcatt caagaatggc gtttagttga gcatacttgt tctgatgaaa
      301 atgtcggttt ggtatttgcc ttagagaata aagcgaaaat ggaaatgatg ttaggcgaaa
      361 cttgtgagtt atattttacc catttagatc cagaaccagc acaactggca ttgcactctt
      421 attttaatat tggtgatatt gaaaaagtgg aagtgcaagg cttgccaact cgctgttttg
      481 ataagctaac cgatcaagaa gttgaagtgc catcacctcg caagataagt gaaaatgtgg
      541 attgtattta tccggcacaa gcggtgaatt ttattcaaga ttttgcaaat cagcgcacca
      601 ttaaagttga gcatattaat gcgaccgaaa ccgtactttg gaatccttgg cataataccg
      661 ttagtgcgat gacagaaacg gcgtatcaaa atatggtatg tgtggaaacc gctcggataa
      721 atactctact tcaacaaaat gaaacgctag gagtgagggt tttagtgcga tagtgtttaa
      781 tgagagcaag cagctgaatt agtaatattg tttacaaa
//
LOCUS       DANLUT010000286          816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.287, whole genome shotgun sequence.
ACCESSION   DANLUT010000286 DANLUT010000000
VERSION     DANLUT010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.287"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>816)
                     /locus_tag="PXB38_002558"
     CDS             complement(<1..>816)
                     /locus_tag="PXB38_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HDL5354792.1"
                     /translation="NYAWGRGEIELLIQDIEEAQKKEEIQKESEKHRYYIGSLVVSKR
                     SDGYEVIDGQQRLTTLKLLLSYYNLKYSEQKHINLTFEHREASNYSLSNLTNSSKESD
                     SIRLGYQIISNILEQKANLSGKENLDIKEFFTFLLNNVVILRTEVPEDTDLNHYFEIM
                     NNRGEQLEHHEVLKATLMSSLKDYKEKKLFALIWDACSDMSVYAIKRFPSDIRTSNEF
                     FGEHCHQIPLCFDNMRNKLSEVLERKSDEGNGENTNKDEDDKKKIISLLNRKY"
BASE COUNT          244 a          154 c          100 g          318 t
ORIGIN      
        1 catactttct atttaataac gaaataatct ttttcttatc atcttcatct ttattcgtat
       61 tttctccatt accttcatca gatttcctct ctaaaacttc cgataattta tttctcatat
      121 tatcaaaaca taatggtatt tgatgacaat gttctccaaa aaattcattg cttgttctaa
      181 tatcactagg aaagcgttta atcgcataaa cactcatatc cgagcaagca tcccaaatta
      241 aagcaaacag tttcttttct ttataatcct tcaatgagga catcagcgtt gcttttaaaa
      301 cctcgtgatg ttctaactgt tcaccacgat tattcataat ttcaaaataa tgattaagat
      361 ccgtatcttc tggtacttct gttctgagaa taacaacatt atttagcaag aatgtgaaga
      421 actctttaat atctaaattt tcttttccag ataggttagc tttctgttcc agtatattgg
      481 agataatttg ataacccaac ctgatgctat cactctcttt tgaactattt gtgaggtttg
      541 ataagctgta gttagatgct tcacgatgtt caaaagtcag attaatatgc ttttgttctg
      601 aatattttag attgtaataa cttaacaata gttttaaagt cgttaatcgt tgttgtccat
      661 caataacttc gtagccatca gatcgtttag atactactaa actaccaata tagtaacggt
      721 gcttttctga ttctttctga atttcttctt ttttctgagc ttcttcaata tcttgaatca
      781 gtaattcaat ttcacctctt ccccaagcat agttac
//
LOCUS       DANLUT010000287          816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.288, whole genome shotgun sequence.
ACCESSION   DANLUT010000287 DANLUT010000000
VERSION     DANLUT010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.288"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..156
                     /locus_tag="PXB38_002559"
     CDS             <1..156
                     /locus_tag="PXB38_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDL5354793.1"
                     /translation="GKDGLLVTRGCFTGTVEEFLAKSDEVHDEKTKREYQLLIEVAKS
                     RILGEAT"
     gene            184..636
                     /locus_tag="PXB38_002560"
     CDS             184..636
                     /locus_tag="PXB38_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5354794.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPTVTLTLPCPLKEPYEGM
                     WFIDNDFTVVKSMFSNAPFAKKFLAQGRCFASEKDARAWLYALKNSMR"
     gene            655..759
                     /locus_tag="PXB38_002561"
                     /pseudo
     CDS             655..759
                     /locus_tag="PXB38_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
BASE COUNT          286 a          138 c          176 g          216 t
ORIGIN      
        1 ggaaaagacg gactgcttgt aacaagaggc tgtttcaccg gcacagtcga agagttttta
       61 gcaaaatccg acgaagttca cgatgagaaa acgaagcggg aatatcagct actgattgag
      121 gtagcaaaaa gcagaatttt aggagaagcg acttaatcag tcgctttttt attggagaat
      181 aaaatgaaac catttgattt aaataaagca ttggcaggtg agccagtaaa actaagaaat
      241 aatgataagg catttgtaaa atacctaatt agtgatgact atattagaga taataaagac
      301 caccaagtac aagggtatac agttgatgaa gaaaatgtat ttttgtcaga agtatcgtgg
      361 gctgttagcg gatctcattt caatgatgga acaatagctc aatatgatat tgttggtatg
      421 tgggaagaac caagacctac agtaacactt acactccctt gcccgttgaa agaaccatat
      481 gaagggatgt ggtttattga caatgatttt acggtggtaa aatctatgtt ctcaaatgcc
      541 ccctttgcaa aaaaattctt ggcacaaggg cgatgtttcg cctcagaaaa agatgctaga
      601 gcgtggttat atgcacttaa gaacagcatg agatagtgtg cttattattc tctcaaccat
      661 tggtattttc ttagtgtaaa tcaatatggg cttgatgacg atgtgattgc agtaacccac
      721 tggcaaccac ttccaaagct gccaaaggac aaccaatgac agacaccaaa cgcttagatt
      781 ttatcaaaaa gcacaaaatg gaaatccgct acaatg
//
LOCUS       DANLUT010000288          810 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.289, whole genome shotgun sequence.
ACCESSION   DANLUT010000288 DANLUT010000000
VERSION     DANLUT010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.289"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..494)
                     /locus_tag="PXB38_002562"
     CDS             complement(<1..494)
                     /locus_tag="PXB38_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5354795.1"
                     /translation="MPVSISNQMKLDLAKLEQNAMLDLYEVDLRTLKDKSGNAGSVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLSSLTRETATFTLA
                     LPIET"
     gene            complement(494..>810)
                     /locus_tag="PXB38_002563"
     CDS             complement(494..>810)
                     /locus_tag="PXB38_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354796.1"
                     /translation="WCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLDNLLRTYTGTIK
                     VKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMAGLNHWEFSVTFKE
                     VP"
BASE COUNT          217 a          184 c          170 g          239 t
ORIGIN      
        1 gtttcaatcg gtaatgccag cgtaaaagta gcagtctctc gtgtgaggct tgaaagttgc
       61 tcaatcacaa aatggctgat gatttcctga ttaggatcgg ctttggcatt acctccagca
      121 aagtttactg catctaaata ttgggcgtaa acctgatgac ggcgaacaat cgccccgata
      181 cactcatcaa actgattagc aatacccgta actaagccaa acagatttga tagcgtaaga
      241 gtagggcgat tgcttgggcc gctgctgtta cgctcaaatc ctgttgcctc gatggggtaa
      301 gggtcgtaag ttcgaccttg ccagacgata cttgttttga gttcatttag cccagaataa
      361 aagcggtaaa ctgaaccagc attaccgctt ttatccttta atgtgcgtaa gtccacctcg
      421 tacaaatcaa gcattgcatt ttgctcaagt ttggcaaggt cgagtttcat ttggttggag
      481 atactaactg gcattatggt acttccttaa acgtcacgct aaattcccaa tggtttaagc
      541 cagccatttt tgcgggccaa ctgctacaca ctaccttttt gttttgttgt gtgtacggat
      601 ctttaaagta aaaaggggaa acaccacgat gtttggcaaa aaatgcctcc accgctaaat
      661 gttccccctt tttcactttg attgtgcctg tataggttcg caacagatta tccaaccctt
      721 taggagagcg ttgcgtataa ccatccccga atttaacttc cattatttca ggggtatttt
      781 caaccgctaa atcggtgcga acacaccatt
//
LOCUS       DANLUT010000289          799 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.290, whole genome shotgun sequence.
ACCESSION   DANLUT010000289 DANLUT010000000
VERSION     DANLUT010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.290"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..422
                     /locus_tag="PXB38_002564"
     CDS             <1..422
                     /locus_tag="PXB38_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354797.1"
                     /translation="HNNSQISYQETEEVNLDARLRQVEGDVREIKSNYLTKEAFYKAG
                     GSTLIALVVTAGIALWTVYSHLDTKVEARFSKIDDKFVQIETNIKNLDIRLTKVESRL
                     DNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFKR"
     gene            553..735
                     /locus_tag="PXB38_002565"
     CDS             553..735
                     /locus_tag="PXB38_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5354798.1"
                     /translation="MKYSEFLRYLLAQGCEIENHRRGSHRKVTLNGKQSVFPYHGSKE
                     IGTGLVNKIKKDLDLK"
BASE COUNT          288 a          128 c          159 g          224 t
ORIGIN      
        1 ggcataataa ttcacaaatt agttatcagg agactgaaga agtgaattta gatgctcgat
       61 taagacaagt tgaaggcgat gtaagagaaa tcaagtcaaa ttatttgacg aaagaggctt
      121 tttataaagc tggtggctct acactcattg cattagtagt tactgctgga attgcattat
      181 ggacagtata ttcacacctt gacaccaaag ttgaagctcg attctcgaaa attgatgata
      241 agtttgtcca aatagagacc aatatcaaaa atcttgatat tcgcctcact aaagttgaat
      301 ctagattaga taatgtcgaa caacgactag acaatgttga gcagcgacta ggcaatatgg
      361 agaagaaaat agatggggtt gataataaac tcgatctgtt actacaacaa ttcaaaagat
      421 aaaataatat tccttgaata aaccgccctc gtggcggttt tcttttctgc tacaaaaaaa
      481 cacaacaaaa atgttgcaat accaacaaaa atgttgtatt atttccttgc tgttttgata
      541 aggaggtatc ttatgaaata cagcgagttc ctgaggtact tacttgctca aggttgcgaa
      601 attgaaaacc ataggcgagg cagtcatcga aaggtaacac taaacggaaa acaatcggtt
      661 tttccttatc acgggagcaa agagattggt acaggtttag taaataagat taagaaagac
      721 ttagatctta aataacaaag tccctcgaaa gaggggcttt tctaggagtt tatatgttac
      781 gctacccagt tgaaattac
//
LOCUS       DANLUT010000290          796 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.291, whole genome shotgun sequence.
ACCESSION   DANLUT010000290 DANLUT010000000
VERSION     DANLUT010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.291"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(137..769)
                     /locus_tag="PXB38_002566"
     CDS             complement(137..769)
                     /locus_tag="PXB38_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL5354799.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
BASE COUNT          238 a          170 c          138 g          250 t
ORIGIN      
        1 cttttttaat ttagtataaa aggaataaaa aatataattt gagcgatttt tgtgatctaa
       61 atcgaaaatc agaaaatttc tttcgttcta aaaaaataag ctaaacagcc tatatttcag
      121 cctctcttac aaacacttaa gccaccgaat atcccatatt ttcaggggca aattcgcctt
      181 ggtagtggcg ttcaatcgga acggcgattt tacttgtaag atccagcact tgatgccctt
      241 gtaatttctc tacatcggtt tgccagtttt cccaacgcaa atcctgataa aaatggttta
      301 aatctccggc taatgcccag cctagaaatt ctgaataacc taattgggtg ttttcccatt
      361 ttttagcttt tggatgataa taataaactt tgccaagatc tgagccgatt ccgccggcat
      421 taatggcaaa atagccaccg attgcatcat ccgctaccag caagtggctt ggttgttcgc
      481 cagattgttt aaaagttttg ccaaagttcc aatcaaataa gcctcgaggc aatttttcgt
      541 tgcctgagcc taaaatgcgt aaccaaccgt ggtcaataaa tacgccaccg gtttcataca
      601 ccattgcccc tagcggtgag cgagtagaaa gttgcatacc aaccaatgca ctgccggcat
      661 cttcagggta actcgctaaa atttcgtaat gatttttggc ttgggtaaac cagtctctta
      721 aaattaacca agccgattgt ttatctaata attgttctaa atttttcatt tgcaaaattt
      781 ccttagaatt tgaccg
//
LOCUS       DANLUT010000291          796 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.292, whole genome shotgun sequence.
ACCESSION   DANLUT010000291 DANLUT010000000
VERSION     DANLUT010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.292"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..502
                     /locus_tag="PXB38_002567"
     CDS             <1..502
                     /locus_tag="PXB38_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354800.1"
                     /translation="SNPNSSLFQFICFIRKYPKALPFGIMMIFIIPPMIMLIKSYIEV
                     NHILKNIENDKINFNHQQNKYDSIINKAKNQNSQENNLTEINSNIQILAEKHQLTIES
                     LQWNLEQGKSIELSIIGNSRSLFDFIHSVKQIPYLKYNAISLIKSRQDRKVEMNTTLV
                     ILANKE"
     gene            505..>796
                     /locus_tag="PXB38_002568"
     CDS             505..>796
                     /locus_tag="PXB38_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354801.1"
                     /translation="MRNWFLFITLFISFSVKANDPFFGEKQETQASGNIAESNVEFAK
                     NTENITACKVPDNLSAKNIVTDFDKMTLIGLVKINEVMRALFIDEKQQLLALK"
BASE COUNT          319 a          125 c          107 g          245 t
ORIGIN      
        1 ttccaatcca aacagttcat tatttcagtt tatttgcttt atccgaaaat atcctaaagc
       61 attaccattt ggcattatga tgatattcat cattccacct atgattatgt tgataaaatc
      121 ctatattgag gttaatcata ttttaaaaaa tatagaaaat gacaagatta actttaatca
      181 tcaacaaaac aaatatgact caattatcaa taaagctaaa aatcagaaca gccaagagaa
      241 taatttaacc gaaataaaca gcaacataca aatattagct gaaaaacacc aactaaccat
      301 tgaaagttta caatggaatt tagaacaagg taaaagtatt gaattgagta ttatcggcaa
      361 tagccgatct ttatttgatt ttatccattc agttaagcaa ataccttatt tgaaatacaa
      421 tgcgattagc ctcatcaaat ctcggcaaga cagaaaagtt gaaatgaata ctaccttagt
      481 catattagct aataaggaat aacaatgcgt aattggtttt tatttattac tttatttatc
      541 agtttttctg taaaagcaaa tgatcctttc tttggagaaa aacaggaaac tcaagcctca
      601 ggcaacatcg ctgaaagcaa tgtggaattt gcaaaaaata ctgaaaacat caccgcttgt
      661 aaagtacctg ataacctttc tgcaaaaaat atagtaactg attttgacaa aatgacactg
      721 ataggattag ttaaaatcaa tgaagtaatg cgtgcattat ttattgatga aaaacaacaa
      781 ttacttgctc taaaag
//
LOCUS       DANLUT010000292          775 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.293, whole genome shotgun sequence.
ACCESSION   DANLUT010000292 DANLUT010000000
VERSION     DANLUT010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.293"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>775
                     /locus_tag="PXB38_002569"
     CDS             <1..>775
                     /locus_tag="PXB38_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354802.1"
                     /translation="YQKFSTVIESLDWNKLSATNGVDQLATDLKTKIETDFPNINFSN
                     DQYKDLIKGYRNIQGNLVTAIPKFLNKVNDDFAISNSDRGLYYNYLPYHGIDRWEGSN
                     FNFRTLNGVYYDDNLTSTELLRKFMIQRDYNTLSELSRAHAGNADGLAKNYHLVVAKM
                     SYENLKKELSKNSDSKFYKLKKLYEAYGEFSNLNEYVSSSFQGNPLELLTVPVLKKSL
                     ENQELLPNKLYRKFNIDNQAIAQTTSNITKEEIADLEKTV"
BASE COUNT          299 a          123 c          116 g          237 t
ORIGIN      
        1 atatcaaaaa ttttctacag taatagaatc attagactgg aataaattat cagcaactaa
       61 tggggtagat caattagcaa cagacttaaa aactaaaatt gaaactgatt tccctaatat
      121 taatttttca aatgaccaat ataaagatct cattaaaggt tatcgcaata ttcaaggtaa
      181 cttagtaaca gccattccta aattcctgaa taaagttaat gatgattttg ctataagtaa
      241 tagtgataga ggcttatatt ataactacct tccttatcat ggtattgatc gttgggaggg
      301 ttctaatttt aactttcgaa cactaaatgg agtttattat gatgataatc taacttcaac
      361 agaactcctg cgaaaattta tgattcaaag agattataac actctttctg aactaagtcg
      421 tgctcacgca ggaaatgctg atggtctggc taaaaattac catcttgtag ttgcgaaaat
      481 gtcctatgaa aacctgaaaa aagaattatc caagaactcc gactctaaat tttataaact
      541 gaaaaagcta tatgaagcct atggtgaatt ctcaaattta aatgaatatg tttcaagcag
      601 tttccaagga aatccacttg aattattaac agtacctgtg cttaaaaaaa gtttagaaaa
      661 ccaagagtta ctccctaaca agctgtatag gaaatttaat attgacaacc aggctattgc
      721 acagaccaca tcaaacatta ctaaagaaga aattgctgat ttagaaaaaa ctgta
//
LOCUS       DANLUT010000293          763 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.294, whole genome shotgun sequence.
ACCESSION   DANLUT010000293 DANLUT010000000
VERSION     DANLUT010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.294"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            70..>763
                     /locus_tag="PXB38_002570"
     CDS             70..>763
                     /locus_tag="PXB38_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5354803.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDRTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NPVLISNLEDLRG"
BASE COUNT          250 a          110 c          147 g          256 t
ORIGIN      
        1 ctgcttatat tgagagctat gaattgcttg aaaaattagg cgttcagatt gttgatatta
       61 gagaataaaa tgaagaaata tttaatttca ttagaaaaag atgtaaaaag acgagagcta
      121 ttttttagcc agcctaatac ggaagatttt gaggtgttca gtgccattaa tacaatgagt
      181 agtgattggg aggcattaaa taaccatttt gatttggctc tgtttgaaca gcgatatggg
      241 cgtaaaacca ctaagggcga agtaggttgt actttaagcc atttagccgt ttaccaaaaa
      301 attgccgaag atagaactat tgcggaagat gattactgcc tagtctgtga agatgatgcc
      361 ttatttgccg atgatttcca aaaacatctt gatgctttat tagcacaaaa tttaaaagtc
      421 gatattattt tagttgggca gtcgaaaatt ccaactttta acgatagcga attagaactt
      481 aattacccat caacctttgg ctttttgcaa aaaaatattc cgaatagcca atataaatat
      541 gcttattctt acctgaatta ttttgctggt acggttgcat atttaattaa aaaatcgacc
      601 gcttgtcagt ttttagcaca atgtgccgga aaaaatccat actggcttgc cgatgatttt
      661 attttatttg aaaagaattt caaatttgat gtgttaattg tccgcccgtt aatggcgata
      721 gaaaatcctg ttctaattag taatttggaa gatttacgtg gtt
//
LOCUS       DANLUT010000294          732 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.295, whole genome shotgun sequence.
ACCESSION   DANLUT010000294 DANLUT010000000
VERSION     DANLUT010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.295"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..381
                     /locus_tag="PXB38_002571"
     CDS             <1..381
                     /locus_tag="PXB38_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDL5354804.1"
                     /translation="NGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEGADINS
                     GIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGFTVDGV
                     STKVRIDAGVNVIDYRGVVKVTNA"
BASE COUNT          215 a          149 c          162 g          206 t
ORIGIN      
        1 aatggctttg taaacagccg tggtgaaccg ctctctattg agccagaatt tatgctgtta
       61 ccaacctcat tgcataccaa agcaaaacag attcttggtt cgtcaagcgt ggaaggtgca
      121 gacatcaaca gcggtatcat taacccgatc cgtgatattg tcagcccgat taaatcgcct
      181 cgcttacaaa ttgcagatcc gaaatcatgg tacttgctca ataaagaggc gattgaagtc
      241 tcttatctgg acggggtgga tagcccttac atcgagcaac agcacggctt tacggtggac
      301 ggtgtttcga ccaaagtccg tattgatgcc ggtgtcaatg tgattgacta ccgtggcgtg
      361 gtgaaagtga ccaacgctta attgcaaaat aataaacccc gagttagcgg aataactcgg
      421 ggttttgttt taacccttat cagtcaagga ttaaattaaa tgcagtataa catagcaaga
      481 gaggtacgca aaatgttaga actaatgaat aaatctacca aagccaatgt gttgattttc
      541 ggtatttggg cgatggggct actttttgct ttatcggcgt ttattagtgc aatgaccaat
      601 tttatttcta ttcttcatta aaggaaccta attatggcta aaaactatat tcaagacggc
      661 aatacggtgc gtttaaccac caccaaagcc gtaacctccg gtgatgtgat tgtcaccgaa
      721 gatttaattg cg
//
LOCUS       DANLUT010000295          720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.296, whole genome shotgun sequence.
ACCESSION   DANLUT010000295 DANLUT010000000
VERSION     DANLUT010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.296"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(35..>720)
                     /locus_tag="PXB38_002572"
     CDS             complement(35..>720)
                     /locus_tag="PXB38_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354805.1"
                     /translation="YPDERHELFVELLIVLATLRIYRNRNIFFFEKGFFNFFPEFITI
                     LGTGAFNGFLDFPSLVGKVFPEIIDTINEGLDLDIAIENFEVLSQEEMTECMGLYEQA
                     LIKKAEEGEIGLLNVDEINSFYEDNSELILLAKQPMVEEIIPKPDSKASSAILKFFDS
                     NSNTLIAKLKESGLQLSAVALQNDQNIARVANVVYNLLPGMVRIFVSYDTVENFLLNN
                     RQWLINKLV"
BASE COUNT          236 a          141 c           96 g          247 t
ORIGIN      
        1 ttatattgtt tatccatagt tcttcccctc caaattaaac taatttatta atcaaccatt
       61 ggcggttatt taataagaaa ttttctacgg tatcgtaact tacgaaaatt cttaccatgc
      121 ccggcaataa gttataaacg acatttgcta ctcgtgcgat attttggtcg ttttgtaatg
      181 ccacagcact taattgcaaa ccactttctt ttaatttagc aattaaggta tttgagtttg
      241 aatcaaagaa ttttagaatt gcagaggagg ctttgctatc tggtttaggg attatctctt
      301 caaccatagg ttgtttagca agtaagatta gctcactatt atcttcataa aagctattta
      361 tttcatcaac atttaataaa ccaatttcgc cttcttcagc tttcttaatg agagcctgct
      421 catataaacc catacattca gtcatttctt cctgactcaa cacttcaaag ttctcaatcg
      481 caatatctaa atctaaaccc tcatttatcg tatcaataat ttctggaaaa acctttccta
      541 ccaaactagg gaagtctaaa aatccattaa acgcaccagt cccgagaata gtgataaatt
      601 cgggaaaaaa gttaaaaaac cccttttcaa agaagaatat atttctatta cgatatattc
      661 ttaatgttgc tagaacaatg agcagctcta caaaaagctc atgtctttca tctgggtaat
//
LOCUS       DANLUT010000296          718 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.297, whole genome shotgun sequence.
ACCESSION   DANLUT010000296 DANLUT010000000
VERSION     DANLUT010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.297"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(60..698)
                     /locus_tag="PXB38_002573"
     CDS             complement(60..698)
                     /locus_tag="PXB38_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5354806.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDDEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
BASE COUNT          221 a          148 c          110 g          239 t
ORIGIN      
        1 caacgctcaa attttaacaa ttttttgcca aaaaattaag atatttaacc gcttgcacct
       61 tatattttaa aaccttgtcc atcgttccaa gaaaccgtat attctagagg taaacggcaa
      121 cttggcaacg ctgggtttgc tgctttaccg atagctagta gcataacagg caaataacgt
      181 tctgcatcta tattcaataa ttttaataca gcagggcgct caaacacgcc tatcgcatga
      241 gtatcatagc ccttatcttt ggcaattagc attaattgca ttgccgccaa actagtatca
      301 attaatacct gatctctaat ttctgcttga gttgcttggt tatgaagatt tagtaaaaaa
      361 tcaaatttac gttcacgaaa ctctttatgc aaacacccag tttctaccga ttgatcaaca
      421 attgcgccta ataatttttc atattgcaaa tctgccaata tcaccacaat agcagacgct
      481 gtttcacaag gtgggccatt aaaggcaaca ttttttgata atgctgcttt aagaatttca
      541 tcatcaataa tgacaaaacg ccaaggttgc agatttgctt ttgagggagc aagctgggat
      601 aaagcgacca tttcttctaa ttcagttcta ctaatcttaa ttgttgaatt aaaagctttg
      661 atagttttac gctgttcaat cgtatgtttc aattccatct cttttctcct atctttca
//
LOCUS       DANLUT010000297          707 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.298, whole genome shotgun sequence.
ACCESSION   DANLUT010000297 DANLUT010000000
VERSION     DANLUT010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.298"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>707)
                     /locus_tag="PXB38_002574"
     CDS             complement(<1..>707)
                     /locus_tag="PXB38_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HDL5354807.1"
                     /translation="YNVRKRVSKEIIFSQLLESDSFSMPEDKRDRLYNALVISESVDY
                     QELHAIFLLDDFKWRLFDNCREFCEENKIYPYAYQFLANKPAIPDNLESALLFVKVSQ
                     LRELLKDKLSQKIPTRKDEVYPLFAQHFTLEEMKEILEERFIEVKNQFENTVKNHKIN
                     ILGQWFTYYSNNLSDYYLYRILDRTLTHPKLDVPEFIRHSYKDLEFIKKAGLSCFDEK
                     GNLTSVPPLFPGDYSGI"
BASE COUNT          227 a          117 c           98 g          265 t
ORIGIN      
        1 tattccggaa taatcaccag ggaataaagg agggacactt gtcaaatttc ctttttcatc
       61 aaagcaactt aaaccagcct tttttataaa ttctagatct ttgtagctat gccttataaa
      121 ttctgggaca tctagtttag gatgtgttag tgttctatcc aaaattctgt agaggtaata
      181 atccgacaag ttattcgaat aatatgtaaa ccattgtccc aatatattaa ttttatgatt
      241 tttaaccgta ttctcaaatt gattttttac ctcaatgaat ctttcttcaa ggatttcttt
      301 catctcttcg agagtaaagt gttgagcaaa tagaggataa acttcatctt ttcttgtagg
      361 gattttttgg gataatttat cttttaacaa ctctctaagt tgtgaaactt ttacaaaaag
      421 taacgcactt tctaaattat cagggatagc tggtttattt gctaaaaatt gatatgcata
      481 tggataaatt ttattctctt cacaaaactc tctgcaatta tcaaatagcc tccatttgaa
      541 atcatctagc aaaaaaatag catgtaattc ttgataatct acgctctctg aaataactag
      601 ggcattatat agcctatctc ttttatcttc tggcatacta aaactatcag attctaataa
      661 ttgagagaag ataatttctt tacttactcg ctttctgaca ttgtaat
//
LOCUS       DANLUT010000298          705 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.299, whole genome shotgun sequence.
ACCESSION   DANLUT010000298 DANLUT010000000
VERSION     DANLUT010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.299"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            341..>705
                     /locus_tag="PXB38_002575"
     CDS             341..>705
                     /locus_tag="PXB38_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5354808.1"
                     /translation="MITVKFYGHLRKFGTDFRLEVKDTAEAIRALCSQLTGLRETLRD
                     GIYKVRIGKQYLDASALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFQAVLGVALIGAA
                     FFLGPVGWGVLGASSAMMMG"
BASE COUNT          214 a          131 c          157 g          203 t
ORIGIN      
        1 atttggcggc ataaactggc ggataagtta gattttgacg gcatattgaa tgatattgct
       61 gtaaataact aacaaaaaat gaccgcttgt aacaaaaaca aaccccgaag cgtttgcagc
      121 acttcggggt ttttcatatc cacttaccta actaagagga cataaattaa atgaatgata
      181 aacgatttac attcaaattt ctaggagttc ttatggaagc aataaatatt accccaaaag
      241 aaatcagaaa aacaatgtgg acagccgcaa taattctctt tttgtttgcg ttcatctgga
      301 aagcccctga atttatcact gctattcgtt ggtggtaact atgattacag ttaaatttta
      361 cggacatctt agaaaattcg gtacagactt tagacttgaa gttaaagaca ccgcagaagc
      421 catcagagcg ttatgctcac agcttacagg cttgcgtgaa acgttgcgag acggtattta
      481 taaagtccgc atcgggaaac agtatttaga tgcctcagcc cttgaaaaag ggctttttta
      541 ttgcctgaag aaagggcaaa ccattcattt tacccctgtt atcaaagggg cgaaaagcgg
      601 gggtgttttc caagctgtgt taggtgtagc cttaattgga gccgcatttt ttctcgggcc
      661 ggtcggttgg ggagttctag gggcttcttc cgcaatgatg atggg
//
LOCUS       DANLUT010000299          697 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.300, whole genome shotgun sequence.
ACCESSION   DANLUT010000299 DANLUT010000000
VERSION     DANLUT010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.300"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            185..>697
                     /locus_tag="PXB38_002576"
     CDS             185..>697
                     /locus_tag="PXB38_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL5354809.1"
                     /translation="MLASILSGARGGWIAFPFCFLLILIYNLQHINKKLIIFISLLLS
                     VVLAIFIARPEFGIQQRYNEAKSDIIGYFEQGNKNSSLGARFDMWENTIAAITEKPIL
                     GHGGIGYDNFRERQMKANKMAKTTYFNSLHNQYLEASVKRGLIGFLALIAVLIIPFII
                     FTKRLKDNNIA"
BASE COUNT          244 a          111 c          109 g          233 t
ORIGIN      
        1 gatgcttgct ctttatcaaa aatttattct taaatggcaa aaaccattcc ctgacataat
       61 gcatattcaa gcggggaata tctctatatt attaggatta ctcagtatat ccattgcatt
      121 ttattagttc gcagaaaaga aaaatagaat agcactctta tatattatct tcgctgcatt
      181 tggtttgtta gccagcattc taagcggtgc aaggggtggc tggattgcct ttcctttttg
      241 ttttctactc attctaatat acaatttaca acatataaat aaaaaactaa tcatattcat
      301 ctctttatta ttaagtgttg tattagctat atttatagct agaccagaat ttggtattca
      361 acaaagatat aatgaggcta aatcagatat aatcggctat tttgagcaag gaaataaaaa
      421 ttcctctctc ggtgcccgtt ttgatatgtg ggaaaacacc atagctgcaa ttacagaaaa
      481 accaatatta ggacatggtg gtatcggata tgataatttc agagaaagac aaatgaaagc
      541 aaataaaatg gcaaaaacaa cgtactttaa cagcttacat aatcaatatc tagaagcttc
      601 tgtaaagcgt ggccttattg gatttttagc attaatagca gttttaatca ttcctttcat
      661 catttttaca aaacgcttga aagataataa tatagca
//
LOCUS       DANLUT010000300          691 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.301, whole genome shotgun sequence.
ACCESSION   DANLUT010000300 DANLUT010000000
VERSION     DANLUT010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.301"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            1..168
                     /locus_tag="PXB38_002577"
                     /pseudo
     CDS             1..168
                     /locus_tag="PXB38_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650590.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PT domain-containing protein"
     gene            238..>691
                     /locus_tag="PXB38_002578"
     CDS             238..>691
                     /locus_tag="PXB38_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5354810.1"
                     /translation="MNTGADGWVNSSINAIALFLVKEDIICYLDDDNWFEPTHVESGV
                     HALLEMQSDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLS
                     INLNDCQHIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKG"
BASE COUNT          229 a          110 c          127 g          225 t
ORIGIN      
        1 accaaccaac caaccaacca accaaccaac caaccaacca accaaccaac caaccaacca
       61 actgtagctg ttatcagttc aacaattggt cgtcctgaat tagaaagagc tgttttaagc
      121 gtacaaaatc agacttatcc ttgtaaacat tatgtttttg ttgatggaga gaaatatcac
      181 caacaagcgg ctgatatttt aaagaatttt ccaagtgtta ttgttactta tctcccaatg
      241 aataccgggg ctgatggttg ggtaaatagc agcattaatg caattgcact atttttagtg
      301 aaagaagata ttatttgtta tctggatgat gataattggt ttgaacctac tcacgttgaa
      361 tctggtgtgc atgctttatt agaaatgcaa tctgattatg cttactcttt acgtaatttt
      421 tatgatttag atggcgagtt tttgtgtatt gatacgattg aatcgttggg agaatataat
      481 tgcgtttatc aagaaccatt agaatgtaat tatcaattag gtggtgttaa aggtgtttta
      541 tcaataaatc tgaatgattg tcagcatatt gatacgaatt gctattttat tcgtagtgag
      601 atagctcgcc ttatcagtac ggcttggtac acaggtattc ataatgatag aaatgtatat
      661 aaaaaattac aagaattggc actaaaagga a
//
LOCUS       DANLUT010000301          688 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.302, whole genome shotgun sequence.
ACCESSION   DANLUT010000301 DANLUT010000000
VERSION     DANLUT010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.302"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            163..393
                     /locus_tag="PXB38_002579"
     CDS             163..393
                     /locus_tag="PXB38_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354811.1"
                     /translation="MNAQTTLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
BASE COUNT          259 a          138 c          128 g          163 t
ORIGIN      
        1 aacaaccttt ctaaaaataa attctcttta aaatcaataa attactaaac aaaagctaaa
       61 ctttatttag tttacactaa ataaacactt tactaaatgt ttaatattta ctaaactaca
      121 cccatcaaaa caaacaacgc cacagacaaa ggggaaacca aaatgaacgc acaaacaacg
      181 ctaaacaacc acaaagacta cattttatgc ggacgcaaag aaaaacgcac cagtgatttc
      241 atcaatgtgt ttgaggtctt tgaaaatgaa gccacgcaag agtttgtgat tgaaagagca
      301 atgttcagaa atggcaagtt aatcgactgg aaccaaagcg acaaaatgaa cgctgagcaa
      361 gctcaacaac tttggcaagc ctacattcac taagaatttt tatcaaagcc ctttactgag
      421 ggcttgaata aaggttctag acctagccca catagcaggc aatagccgag agataagcag
      481 agactgtggg atgttcttta acaatttagt gcttgtgcgg acgatattaa caacctcgag
      541 cagttgtaaa gtaatgcttt atcactcggc aaggttggtt agaccctgac atacaaattt
      601 gaacgacttg ccaaacagag gtggcaaggt ttaggcaaca cactcgcaag gtgtggagag
      661 ctgaaaaggc aacactggta tcagtcct
//
LOCUS       DANLUT010000302          632 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.303, whole genome shotgun sequence.
ACCESSION   DANLUT010000302 DANLUT010000000
VERSION     DANLUT010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.303"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..435
                     /locus_tag="PXB38_002580"
     CDS             <1..435
                     /locus_tag="PXB38_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354812.1"
                     /translation="TPQKQMLKLMEEFGELCAGVATNEFETILDSLGDCLVVCTIMRK
                     QLKMEKLFSISHCDNTNFNCGVAAQIVQANIDLGNVASELSRGCDLSRLEDYLSGFEN
                     QLDLIAQFYKTDVQTALLYAYIQIKNRKGKMIDGVFVKAEDL"
     gene            complement(439..627)
                     /locus_tag="PXB38_002581"
     CDS             complement(439..627)
                     /locus_tag="PXB38_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354813.1"
                     /translation="MKELFKQWLINQNSDFINGCGVECILSKVDDRLNIINANEEETE
                     TLIEWRNAFLQEVSVFVA"
BASE COUNT          207 a          107 c          124 g          194 t
ORIGIN      
        1 accccacaaa agcaaatgtt aaaactaatg gaagagtttg gggaattatg tgcaggtgta
       61 gcaaccaatg aatttgaaac tattttagac agtctaggtg actgtctagt ggtttgtacg
      121 attatgcgta aacagctcaa aatggaaaaa ctgtttagca ttagccattg cgataatacc
      181 aattttaatt gtggagttgc ggctcagatt gttcaggcca atattgattt aggtaatgta
      241 gcaagtgagt tatctagagg ttgtgattta tctcgattag aagattactt aagcggcttt
      301 gaaaatcagc ttgatcttat cgctcaattc tacaaaacag acgtacaaac agctctcctc
      361 tatgcttata ttcaaatcaa aaatcgaaaa ggaaaaatga ttgatggcgt gtttgtgaaa
      421 gcagaagatt tatagtacct aagccacaaa aacagaaacc tcttgcagaa aagcattccg
      481 ccactctata agagtttcgg tttcttcttc gttggcgttg attatgttta gccggtcatc
      541 aacttttgac aaaatacact caacgccaca accattgata aagtctgaat tttggttaat
      601 tagccattgt ttgaaaagct ctttcatagt ga
//
LOCUS       DANLUT010000303          625 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.304, whole genome shotgun sequence.
ACCESSION   DANLUT010000303 DANLUT010000000
VERSION     DANLUT010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.304"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>625
                     /locus_tag="PXB38_002582"
     CDS             <1..>625
                     /locus_tag="PXB38_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354814.1"
                     /translation="ISIDNASYFTYINGEATHSSIKIQSVNGKEITLDSTPTGLETYG
                     VWSLSTKQISSGLYRSISIVENADGTNTITALQHEPQKEAIVDNAAHFVETARTLYKA
                     PQINAVEVSTGYDGKLYISSDISSGDGKLTYDIKINKDGNLYQFKKGLADPNIELSDL
                     PNGDYSVIIYGKNAKGQIVTEKTQTFTIDRPPAPTGVVVTGGLGQITL"
BASE COUNT          205 a          138 c          136 g          146 t
ORIGIN      
        1 aaattagcat tgataacgcc agttatttta cctatatcaa cggtgaggca acgcactcta
       61 gcattaaaat ccaatcggta aacggtaaag aaatcacgct agatagcacg ccaaccggct
      121 tagaaaccta cggcgtatgg tcgttatcga ctaaacaaat cagctcgggc ttataccgct
      181 ccatctcgat tgttgaaaat gcggacggta cgaatacgat tacggcattg caacacgaac
      241 cgcagaaaga ggcgattgta gataacgctg ctcactttgt ggaaacggcg agaacgcttt
      301 acaaagcccc gcaaattaac gcagtagaag tctcgactgg ttatgacggc aagctctata
      361 tctccagtga tattagttct ggcgacggta agctaaccta tgatattaaa atcaacaaag
      421 atggtaattt gtatcagttc aagaaaggat tagccgaccc aaatattgag ttgagcgatt
      481 taccgaatgg cgattacagc gtgattattt acggcaaaaa cgccaaaggg caaatcgtca
      541 ccgaaaaaac acaaaccttt actattgatc gacctccagc tccgaccggt gtagtagtaa
      601 caggtggatt agggcaaatt accct
//
LOCUS       DANLUT010000304          623 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.305, whole genome shotgun sequence.
ACCESSION   DANLUT010000304 DANLUT010000000
VERSION     DANLUT010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.305"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..182
                     /locus_tag="PXB38_002583"
     CDS             <1..182
                     /locus_tag="PXB38_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL5354815.1"
                     /translation="TTGVFSVKAKQADDIKQGAVLYWSEADGATITAGSNKRLGIAWK
                     ASGTSSATVDVKINV"
     gene            175..477
                     /locus_tag="PXB38_002584"
     CDS             175..477
                     /locus_tag="PXB38_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354816.1"
                     /translation="MSSPFEQAMAAADQTIQHTMMSEWLIGGKPYPATYDEAPAIFNG
                     LHSSDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
     gene            481..>623
                     /locus_tag="PXB38_002585"
     CDS             481..>623
                     /locus_tag="PXB38_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354817.1"
                     /translation="MGSKVTGLKELQASLKKIARQTVPKAAAQAIRTVGRQAMNKAVK
                     SVAA"
BASE COUNT          188 a          147 c          162 g          126 t
ORIGIN      
        1 taaccaccgg tgtatttagt gtgaaagcga agcaagcaga cgacatcaaa caaggtgcgg
       61 tgctgtattg gtcggaagca gacggggcaa cgatcacggc tggctcaaac aaacgcttag
      121 gcattgcctg gaaagcctca ggcacatcat ctgcaacagt tgatgtgaaa atcaatgtct
      181 agcccgtttg agcaggcaat ggcagccgcc gatcaaacca tccaacacac aatgatgagc
      241 gaatggttga ttggcggtaa gccctaccct gcgacatacg atgaggcacc agcgattttt
      301 aatggcttgc actcaagcga tgaccgagct atccacggca cggaacgcac gctaacccta
      361 tttcgggcga gtggctacaa accgagattg gacgaccgag tgagcggaaa tggcaagaaa
      421 taccttgtta aatcctatca ctttgtcgat cagttaatcg tattgcaatt ggagtaaaca
      481 atgggttcta aagtgaccgg tttaaaagaa ctgcaagcct ccctgaaaaa aatagctagg
      541 caaaccgtac ctaaagcagc cgctcaagca atccgtactg ttgggcggca agcaatgaat
      601 aaggcggtta aatcggtggc ggc
//
LOCUS       DANLUT010000305          621 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.306, whole genome shotgun sequence.
ACCESSION   DANLUT010000305 DANLUT010000000
VERSION     DANLUT010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.306"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..296
                     /locus_tag="PXB38_002586"
     CDS             <1..296
                     /locus_tag="PXB38_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354818.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     ARPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..>621
                     /locus_tag="PXB38_002587"
     CDS             324..>621
                     /locus_tag="PXB38_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354819.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQTLSAASHNELKIN"
BASE COUNT          226 a          103 c          113 g          179 t
ORIGIN      
        1 cagataccag atataataag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtagcacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttcca aacactttcg gcagcgtctc
      601 ataatgaact taaaataaat c
//
LOCUS       DANLUT010000306          612 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.307, whole genome shotgun sequence.
ACCESSION   DANLUT010000306 DANLUT010000000
VERSION     DANLUT010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.307"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            3..563
                     /locus_tag="PXB38_002588"
     CDS             3..563
                     /locus_tag="PXB38_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354820.1"
                     /translation="MDDSFYHFPFRPRPGDTSSDTATPCIGGVDLVSNPEKVELIPEA
                     AHSPMLKKLLTDLNTPNSKLLTLGCAYWAHKDNRDTSYAYLEFSFREHSVATNLEFIR
                     SIDEQFEQFLQENKKQLSIEFSVPEQAFDIVSQALFWSIRPFSYFGSEERILIYFQAG
                     SPRHQDLEIFLDLLHRFLTEYLVVPA"
BASE COUNT          186 a          133 c          111 g          182 t
ORIGIN      
        1 aaattgacga tagtttctat cacttcccat ttagaccacg tccgggcgac acttcaagcg
       61 acactgccac accttgtatt ggtggagtag atcttgtttc caatcctgaa aaggtagaac
      121 taataccaga agccgcacac tccccaatgt taaaaaagtt actcacagac ttgaacactc
      181 caaacagcaa acttctaaca ctaggctgtg cttattgggc tcataaagac aatagagata
      241 catcatacgc ttacttagag ttttcattcc gggaacattc agttgcaact aacctagaat
      301 ttatcagaag tattgatgaa cagttcgagc aattcttgca agaaaataaa aagcagttat
      361 ctattgaatt ttccgtgcct gagcaagcat ttgatatagt ttcacaagct cttttctgga
      421 gtattcgtcc attttcttac ttcggaagcg aagagcgcat cttgatatac tttcaggctg
      481 gtagtcctcg acatcaggat ttagaaatct ttttggattt actacaccgc tttttgactg
      541 agtatttagt tgttccagca taacatttac tcgcatttgg aaagggtggt tggactcaaa
      601 ccaacaacca ac
//
LOCUS       DANLUT010000307          597 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.308, whole genome shotgun sequence.
ACCESSION   DANLUT010000307 DANLUT010000000
VERSION     DANLUT010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.308"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>597
                     /locus_tag="PXB38_002589"
     CDS             <1..>597
                     /locus_tag="PXB38_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354821.1"
                     /translation="ELIKKSVKDCSRDREKISHCTLLNACSKALGFSGDFAGFQEDYL
                     SNLTQFMEKHGLLYLVDLTKQKYPVNDMCMTRSLALKKQDISERIFFSGKEIPKRIFT
                     GFNFRYDMHLANGFRIGNSLKTPYSDIGICEDINEALKNPSIKIDCRDGTIRSMADVV
                     IGRYLDKVLFYYFNLIGDQLVQPRLDKYEIQCYYPQGY"
BASE COUNT          218 a           78 c          106 g          195 t
ORIGIN      
        1 agaattaatt aaaaaatctg ttaaagattg ttctagagat agagaaaaaa tttctcactg
       61 tactttgtta aatgcttgct caaaagcttt aggattttct ggagactttg cagggtttca
      121 agaagattat ttatctaatt tgacgcaatt catggaaaaa catgggctct tatatcttgt
      181 agatttaaca aaacaaaaat atccagtaaa tgatatgtgc atgacaagga gcttagctct
      241 gaaaaagcaa gatatatctg aaagaatttt ctttagcgga aaggaaatcc ctaagagaat
      301 atttactgga tttaatttcc gatatgatat gcatttagct aatggttttc gtatcggaaa
      361 ttccttaaaa accccatatt ctgacatagg tatatgtgaa gacataaatg aagcattaaa
      421 aaatccatca ataaaaattg attgccgtga tggcacaatc agaagtatgg cagatgtagt
      481 cataggtaga tatcttgata aagtattgtt ttattatttt aacttgatag gtgatcagtt
      541 agtccagcct agattggata aatatgaaat acaatgttat taccctcaag gttatca
//
LOCUS       DANLUT010000308          594 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.309, whole genome shotgun sequence.
ACCESSION   DANLUT010000308 DANLUT010000000
VERSION     DANLUT010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.309"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..581)
                     /locus_tag="PXB38_002590"
     CDS             complement(<1..581)
                     /locus_tag="PXB38_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354822.1"
                     /translation="MKKYLMLCSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYF
                     IGSTIDAIFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSP
                     QFIAKNLTMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQP
                     IIAKAKSYQKSIEFSFDDTISVIAAPITIPASI"
BASE COUNT          184 a           94 c           94 g          222 t
ORIGIN      
        1 ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc atcaaagcta
       61 aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt aaatttatac
      121 ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag acctgcatag
      181 cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg tagagcttga
      241 atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat ttgaatattt
      301 tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata cggactttga
      361 agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat cagcgtttta
      421 tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc aaccaaaatt
      481 gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt aaagcatgcg
      541 gagagaaacc atagtgagca gagcattaag tattttttca ttttattatc ctat
//
LOCUS       DANLUT010000309          576 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.310, whole genome shotgun sequence.
ACCESSION   DANLUT010000309 DANLUT010000000
VERSION     DANLUT010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.310"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..539
                     /locus_tag="PXB38_002591"
     CDS             <1..539
                     /locus_tag="PXB38_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL5354823.1"
                     /translation="QDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADM
                     LNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTN
                     GICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPM
                     ATLLDGKRIWVEKNLSSN"
BASE COUNT          207 a           95 c          122 g          152 t
ORIGIN      
        1 cacaagatac tttctatgtg ggcaacctca aaggagtggg tcgtatttat caacaaacgt
       61 ttattgatac ttacagtaaa gtggcgtttg caaaacttta tacaatgaag accgctatca
      121 gtgctgcgga tatgctgaat gataaagtgt taccatactt tgaaagccaa ggtttaccga
      181 tgttacgcat attaactgac cgaggaagtg aatattgtgg caaggtagaa aatcacgatt
      241 atgagcttta tttagcaata aatgatattg aacacagtaa aaccaaggta aaacatccgc
      301 agactaacgg catctgcgaa cggttccata aaacaatctt acaagaattt taccaagtgg
      361 catttaggaa gaaaatttat acggatttaa cgacattaca agcggattta gatgagtggt
      421 taatgtatta taatcaccat cgaacacatc aaggaaaaat gtgctgtggc agaacaccga
      481 tggcaacctt acttgatgga aaacggattt gggtggaaaa gaatttaagc tcaaattaat
      541 ctgacagaca cggtaattta aaacggggga ctgtca
//
LOCUS       DANLUT010000310          563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.311, whole genome shotgun sequence.
ACCESSION   DANLUT010000310 DANLUT010000000
VERSION     DANLUT010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.311"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          188 a          113 c           80 g          182 t
ORIGIN      
        1 aatcacaacg aggtaatact tcattgatag ccttccaaga aagtaaatct tgctactcta
       61 tagcaccttt cattaaaagt ggttgtttct cagaataact ttcacgaaat tcttgataag
      121 aaattggaaa ttgaattttc attttcatct ccactagcct tgataatctg taccatcacc
      181 acaatcgtag tttgagccag attggttatt attcgttcta cctggaactc caaacgtagg
      241 ctttattggt aaagatgatg gaattaattc ttttacaccg ctaggtaaag aattttcatg
      301 tattgtaata ggtaggctcc tcgctaaatc aagggctaaa ttaacagaag tactggataa
      361 accgcctaaa gcccccctct tgcaaaccct gtagcaaaag caacgccata agatacaaga
      421 tctggttgat tagccttatt ttcagaattc cctccaacta ctaagcttaa ttgtaaaatt
      481 gatggttctt tcatttcatt ctccctttaa tctaattctg atcacaaaaa ccaatattaa
      541 aaataattct aaaaataata cta
//
LOCUS       DANLUT010000311          561 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.312, whole genome shotgun sequence.
ACCESSION   DANLUT010000311 DANLUT010000000
VERSION     DANLUT010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.312"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>561
                     /locus_tag="PXB38_002592"
     CDS             <1..>561
                     /locus_tag="PXB38_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354824.1"
                     /translation="VTQTEIFAAETDNFALAKKIAKVTARTYAHTLKGNKVVRYYWLR
                     HTRGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIVNEVFDVAAPARGLELVKT
                     VANLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAEDVTGKLSKSKIDTSLISQL
                     TGADNTANLARRLAETAQSNINQEITN"
BASE COUNT          191 a          119 c          117 g          134 t
ORIGIN      
        1 gtcacacaaa ccgaaatttt tgcggccgaa accgataatt tcgcccttgc aaaaaaaatc
       61 gcaaaagtga ccgctagaac ctacgctcac acactaaaag gtaacaaggt tgtacgctat
      121 tattggctac gccataccag aggcattaat gtcggaccgt tttatcaaca acagggggta
      181 agaggacaaa cagcggttga tttggatgct cgattaaccg aattaaacac tcagttatca
      241 cgcaatattg ttaatgaggt ttttgatgtt gctgcaccgg caagaggttt agaattagtg
      301 aaaacagtcg ctaatttgac cgacaaaggt actaaactgg cgtcatctca agtttacaat
      361 caggctgacg gcaagctcta tacttggaac ggtacagcat actcagctac agtggctgcg
      421 gaagatgtta ccggcaaatt atcaaaatct aaaattgata cgtcccttat ttcgcaatta
      481 acaggtgcag ataacaccgc aaatttggca agaagattag cggaaacagc tcaaagcaac
      541 attaaccaag agattactaa c
//
LOCUS       DANLUT010000312          556 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.313, whole genome shotgun sequence.
ACCESSION   DANLUT010000312 DANLUT010000000
VERSION     DANLUT010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.313"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>556
                     /locus_tag="PXB38_002593"
     CDS             <1..>556
                     /locus_tag="PXB38_002593"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354825.1"
                     /translation="RDYDLILSVSGGSRLWWLHVGKHKADEVNEAQKLIDALIILNET
                     LTEFSNESHRLVTTLSRHIVTNIKQTPKLPITSRNRNTPVTSFDMLYYYRAKTGKSVT
                     LKQLGLFNTVRELVKKPNALGKKDNRSVHGDFIQQIITKNARSFKNTYSFKEGIWNIN
                     NALWAIGSAIVEGNFTGSAVQKGDR"
BASE COUNT          200 a           78 c          103 g          175 t
ORIGIN      
        1 agagattatg atttgatttt atctgtttca ggtggttcaa gattgtggtg gttacatgtt
       61 ggtaagcata aagcagatga agttaatgag gcccagaaat taatagatgc attgatcata
      121 ctcaatgaaa cacttactga gttttcaaat gaaagtcatc gactggtaac aactttatca
      181 aggcatattg ttacaaatat aaaacaaacc ccaaaattac cgattacatc tcgaaataga
      241 aatactccag tcacatcctt tgatatgctt tactattata gagctaagac tggcaaatca
      301 gttactttaa aacaattagg attatttaat actgtccgag agttagtaaa gaaaccaaat
      361 gcacttggta agaaagataa ccgtagcgta catggtgatt ttattcagca aatcattact
      421 aaaaatgctc gttcttttaa aaatacttac tcttttaaag aaggtatttg gaatattaat
      481 aatgcattat gggcaattgg tagtgctatt gttgaaggca attttacggg tagtgcggta
      541 caaaaaggag atagat
//
LOCUS       DANLUT010000313          554 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.314, whole genome shotgun sequence.
ACCESSION   DANLUT010000313 DANLUT010000000
VERSION     DANLUT010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.314"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(4..>554)
                     /locus_tag="PXB38_002594"
     CDS             complement(4..>554)
                     /locus_tag="PXB38_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354826.1"
                     /translation="VVFTAPTSGCIRFALRLDNIQGKANPFLFARRPMLEEASDNVTD
                     ITQPSPWQNAGVTAIHGGSIATNTVTAQQIAANTITANQIAVGTIAARNMAVDSIEAR
                     HIVGSSITADKLNVNNLAAISANLGAITAGSININNRFKVSNAGVVEMRANSGNVGMV
                     MNNDSIIVYDEQGRVRVKMGKL"
BASE COUNT          159 a          125 c           99 g          171 t
ORIGIN      
        1 gaatcataat ttccccattt ttactctaac cctaccttgt tcatcataaa caataatact
       61 atcgttattc attaccatac caacatttcc actattggct cgcatttcga ctactccagc
      121 attacttacc ttgaatctat tattgatgtt aatagaacca gctgtaatag ctccgagatt
      181 tgccgatatt gctgctaaat tgtttacatt tagcttatcc gcagtgatcg aactccccac
      241 aatatgacga gcctcaatcg aatctaccgc catattgcgt gcagcaatcg tgccgactgc
      301 gatttggttg gcggtaatgg tatttgctgc aatttgttga gcagtaacgg tattagtagc
      361 tattgagcca ccgtgaatag cggttacacc ggcattttgc caagggctag gctgagtgat
      421 atctgtaaca ttatcactag cctcctcaag cattggtcta cgagcaaata aaaatggatt
      481 agctttacct tgaatattat ctaatcgtaa tgcgaaacga atacagcctg aagtaggtgc
      541 agtaaataca acct
//
LOCUS       DANLUT010000314          527 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.315, whole genome shotgun sequence.
ACCESSION   DANLUT010000314 DANLUT010000000
VERSION     DANLUT010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.315"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>527)
                     /locus_tag="PXB38_002595"
     CDS             complement(<1..>527)
                     /locus_tag="PXB38_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5354827.1"
                     /translation="KKFNKVFLANINELEIQFLLSAISFQELNTFDDGTANIAQNSIF
                     YQAENIGLNRKLINFFLGNKYSLEKLKQRSKTHYTIYKNFPNIIENTVYIDLINQVES
                     VGTAPSNDDITHILLGQPIFERDDEKNIALAEKVIQQFGIDLYLPHPREKYELENVEY
                     INTNLIFEDYIFQEF"
BASE COUNT          177 a           75 c           72 g          203 t
ORIGIN      
        1 aaattcttgg aaaatataat cttcaaaaat tagattagta ttaatgtatt ctacattttc
       61 taattcatat ttttctcttg gatgcggtaa atatagatca atgccaaatt gttggataac
      121 tttttccgcc aatgctatat ttttttcatc atctcgttca aaaataggct gtcctaataa
      181 aatatgggta atatcatcgt tagatggtgc tgtacccact gattcaacct gattaatgag
      241 atcaatataa accgtatttt caataatatt cggaaaattt ttgtaaattg tataatgagt
      301 tttagagcgt tgtttcagct tttctaggct atatttatta cctaaaaaaa agttaatcaa
      361 ttttcgattt aacccaatat tttcagcttg atagaaaata ctgttttgtg caatattagc
      421 tgtgccatca tcaaaggtat tgagttcttg aaatgaaatg gcacttaaca gaaattgaat
      481 ttctaactca ttgatatttg ctaaaaagac tttattaaac ttcttac
//
LOCUS       DANLUT010000315          510 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.316, whole genome shotgun sequence.
ACCESSION   DANLUT010000315 DANLUT010000000
VERSION     DANLUT010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.316"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..500)
                     /locus_tag="PXB38_002596"
     CDS             complement(<1..500)
                     /locus_tag="PXB38_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354828.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQL"
BASE COUNT          201 a           97 c           79 g          133 t
ORIGIN      
        1 cttaattgga aaaaggcgga agaagtgatg ttatataaac ggtattcttg ttccgaacca
       61 aaaaaacgtg gcatcattgc attgctggat aataaaaaat ccaccataaa cggcaaacct
      121 aataaggctg tcacaccaca aatccattga atagcaatgc cgatttttaa atcacgaacg
      181 aataaagttt taccttgttg gttatgataa aaaacattat aaatcgcaat cccgaacaca
      241 aacaaaatca gcattttgac atacattgcc agcacaccaa tttcttttgt actgttaatc
      301 aataatggaa taatgctaaa gccgattaat gcaataattg caatcaggct atctttagga
      361 ataataatgc cattcgattt gcccttgatt atttggaaaa ccaaatagcc acaagcaaca
      421 agcccgacta caaacgacat tcttaaaaaa tggaaaaacc acggatcgta aagataaaat
      481 aagttaatga gtgctgacat ttcagaccta
//
LOCUS       DANLUT010000316          509 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.317, whole genome shotgun sequence.
ACCESSION   DANLUT010000316 DANLUT010000000
VERSION     DANLUT010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.317"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..464
                     /locus_tag="PXB38_002597"
     CDS             <1..464
                     /locus_tag="PXB38_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354829.1"
                     /translation="ANKYSENIEEGIKNAEKEFKKNYNKSLRYDAKKAQQRVQKYVEK
                     VNQKNPQALKDLDNISNLKKINENLKKAAKFTGIISSIKDYYDLAEGFRNGIKSNDWE
                     PFLKTSAQIGASALMSMLVASMITGPTTIGSIIISAAFISIGGYIISLASR"
BASE COUNT          199 a           72 c           90 g          148 t
ORIGIN      
        1 ttgctaataa gtactctgaa aacattgaag aaggtattaa aaatgcagaa aaagaattta
       61 aaaagaatta taataaaagt ctaagatatg atgctaaaaa agcacagcag agggtgcaaa
      121 aatatgtcga aaaagtcaac caaaagaatc ctcaggcact aaaagatctc gataacatat
      181 ccaacttaaa aaaaattaat gagaatttaa aaaaagcagc aaaatttact ggtattatta
      241 gcagtattaa ggattattac gatctagcag aagggtttag aaatggcata aagtctaatg
      301 attgggaacc ttttttaaag acatctgctc agataggtgc ttcagcttta atgagtatgt
      361 tagtagcctc aatgataaca ggcccaacga caattgggag tattattatt agtgctgcat
      421 ttatttctat agggggatat attatttcac tagcttcccg ttagatagtc tttgttatac
      481 tcaatagcct actatactac ctataggct
//
LOCUS       DANLUT010000317          505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.318, whole genome shotgun sequence.
ACCESSION   DANLUT010000317 DANLUT010000000
VERSION     DANLUT010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.318"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(39..>505)
                     /locus_tag="PXB38_002598"
     CDS             complement(39..>505)
                     /locus_tag="PXB38_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL5354830.1"
                     /translation="AIWIKIEDPKGDVFFMQRRLGLNGKEFLCYKFRSMYSDQSFMAD
                     WLEMNPEEKAYYNIYHKYMNDPRITKVGSFLRKTSLDELPQLLNVFKGEMSLIGPRPY
                     MVIEKKDIGNKISLVLGVKPGITGLWQVSGRSDTDFDTRVQMDVWYMKNWSL"
BASE COUNT          177 a          106 c           57 g          165 t
ORIGIN      
        1 actgttttaa atgttttaaa caaaatgaca atatcacctc acaatgacca atttttcata
       61 taccaaacat ccatctgaac tcgagtatca aaatcagtat cactacggcc gcttacttgc
      121 cataaacctg taattccggg cttaacgcct aaaaccaagg agattttatt accaatatct
      181 tttttctcaa ttaccatata agggcgaggt cctattaagc tcatttcccc tttaaaaaca
      241 tttaacaact gtggtagctc atctaaagat gtttttctta aaaaagaacc taccttagta
      301 atacgtggat cattcatata tttatgataa atattataat aagccttttc ttccggattc
      361 atttctaacc aatctgccat aaaagattga tcagagtaca tagaacggaa tttatagcat
      421 aaaaactctt taccatttaa tcctaatctc ctttgcataa agaatacatc acctttagga
      481 tcttcaatct taatccaaat agcga
//
LOCUS       DANLUT010000318          500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.319, whole genome shotgun sequence.
ACCESSION   DANLUT010000318 DANLUT010000000
VERSION     DANLUT010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.319"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            37..>500
                     /locus_tag="PXB38_002599"
     CDS             37..>500
                     /locus_tag="PXB38_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5354831.1"
                     /translation="MPNFSFTHLYKKHTKELPAVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATSGNISPQEFKAELENFRNLVNQIEELRTQI
                     AEQEKQGSVNQQLQDTLKSQIAQYDTILERVREKKAQQAILANSVIPMRKELV"
BASE COUNT          175 a          100 c           93 g          132 t
ORIGIN      
        1 aatgaaaagt aaaagtttta atgaggaaat tttgatatgc caaactttag tttcacccat
       61 ctgtataaaa aacacacaaa agagctccct gctgttacct tgcttagcgc tctgataggg
      121 cttagccaag tctcttatgc caatccactt cctttaggca acaccactgg caccaataac
      181 cttgctgtag gtgaaggtag ttttgcgtta ggcacaggtt ctcaagcaat cggcaagaat
      241 gccattgcaa ccagtggtaa tatctccccc caggaattca aggcggagtt agaaaacttc
      301 cgtaatttag ttaatcaaat tgaagagtta cgtactcaaa ttgctgaaca agaaaaacaa
      361 ggctctgtta atcaacaatt acaagatact ttaaagagtc agattgctca atatgacact
      421 attttagagc gtgtacgtga aaaaaaagca caacaagcaa tattagccaa tagcgttata
      481 ccaatgcgga aagaattagt
//
LOCUS       DANLUT010000319          472 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.320, whole genome shotgun sequence.
ACCESSION   DANLUT010000319 DANLUT010000000
VERSION     DANLUT010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.320"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(5..>472)
                     /locus_tag="PXB38_002600"
     CDS             complement(5..>472)
                     /locus_tag="PXB38_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5354832.1"
                     /translation="TGLDWWLVHNRQIHKFRNVPHLIGREFKHGTMDCYTLYRDAYML
                     AGYEMDEFDRQDDWWHTGQNLYLDNIQGQGFERVGTPQIGDVILMQVGADVPNHAAIY
                     IGEQMVIHHSPNRLSKRDLYDGYWLRHTHSIWRHKLADKLDFDGILNDIAVNN"
BASE COUNT          125 a          114 c           96 g          137 t
ORIGIN      
        1 tttgttagtt atttacagca atatcattca atatgccgtc aaaatctaac ttatccgcca
       61 gtttatgccg ccaaatgctg tgggtatgac gtaaccaata gccgtcgtat aaatcacgct
      121 tagataatcg gttcgggcta tgatggatta ccatctgttc gccaatgtaa atggcagcgt
      181 ggttcggcac atcagcacct acttgcatta aaatcacatc gccgatttgt ggggttccca
      241 ctcgctcaaa accttgccct tggatattat ccaaataaag attttgcccg gtatgccacc
      301 agtcatcttg tcgatcgaat tcgtccatct cgtaaccggc aagcatatag gcatcacggt
      361 agagcgtgta gcaatccatt gtgccgtgtt taaactcacg cccgattaaa tgtggtacat
      421 tgcggaattt atggatttgc cgattatgca ctagccacca atctaaaccg gt
//
LOCUS       DANLUT010000320          465 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.321, whole genome shotgun sequence.
ACCESSION   DANLUT010000320 DANLUT010000000
VERSION     DANLUT010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.321"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            29..>465
                     /locus_tag="PXB38_002601"
     CDS             29..>465
                     /locus_tag="PXB38_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5354833.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFALIPIAIVFFFDQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSA"
BASE COUNT          135 a           86 c           65 g          179 t
ORIGIN      
        1 tattcctttc ataggtagga gatctattat gctaagtaag ctacaacgct ttaccttaat
       61 gataaaaagc accatcatta agcatccact ggaaatttta ttcgttactt acgtcacgat
      121 tttacttatc aataatgtga gcgactacga attaatcaaa cgctttcaaa atctaattgc
      181 tctttttcct atttgcttta ttttgcttta cctgatacgc gataccaaag cttattggct
      241 attcgctctg attccgatag caatcgtctt tttctttgat caaattaatt taacattatt
      301 ggaagattct cgttattggg ctaccatatt ttgtgtattc ctttgtttga tcagtcaata
      361 ttggtacaaa aacaaccatt attttgtagc cggaacaact aataaattag ttaacattgt
      421 ctttgctaca gttttatctg gcattatttt tgcaacatta agcgc
//
LOCUS       DANLUT010000321          455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.322, whole genome shotgun sequence.
ACCESSION   DANLUT010000321 DANLUT010000000
VERSION     DANLUT010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.322"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>455
                     /locus_tag="PXB38_002602"
     CDS             <1..>455
                     /locus_tag="PXB38_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF535 family protein"
                     /protein_id="HDL5354834.1"
                     /translation="GFFSLNIQNNEGIHIYDASFTFLASNKLLVSSIQGPNTASAQDL
                     IKSATKQLHGVRPMFMLINVFKFIAQHFDLELLGIPHKRQAKYRWNDHSKLLFNYDAF
                     WQENGGVITPDKYWHLPTSLDIRELNTIPSKKRSMYKKRYDLFNKIEKV"
BASE COUNT          165 a           80 c           65 g          145 t
ORIGIN      
        1 aggttttttc tccctaaaca ttcaaaataa cgaagggatc catatctatg atgcatcgtt
       61 tacattctta gcttcaaata aattattagt atcctcaatt caaggtccta atacagcatc
      121 agcacaagat cttataaagt ccgcaaccaa acaattacac ggtgttcgcc caatgtttat
      181 gttgatcaat gtatttaaat ttattgcaca acattttgat ctagaactac taggcattcc
      241 ccataaaagg caagctaaat atcgctggaa tgatcattca aaattattat ttaactatga
      301 tgcgttttgg caagaaaatg gaggggttat tactccagat aaatattggc atttaccaac
      361 ttctcttgat atacgagagt taaatactat tccaagtaaa aagcgttcta tgtataaaaa
      421 acgttatgat ctattcaaca aaattgaaaa agtaa
//
LOCUS       DANLUT010000322          453 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.323, whole genome shotgun sequence.
ACCESSION   DANLUT010000322 DANLUT010000000
VERSION     DANLUT010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.323"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(82..435)
                     /locus_tag="PXB38_002603"
     CDS             complement(82..435)
                     /locus_tag="PXB38_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL5354835.1"
                     /translation="MNTMPEKNPDIYTQAWNYLVMFLSNHNGWICGVIIAFFTSITKS
                     FLYGKTDTPKRVLAEAILCSVIAGSMRPILIYINADVSLITPIGAGIGLLGTSAIRQM
                     ILKFLNKKAGGENVD"
BASE COUNT          147 a           97 c           69 g          140 t
ORIGIN      
        1 cctgcttttt caatgtgttt gtcaataatt gagtaaatac cactaactgc attagggaat
       61 acttgtttaa acttactttc actaatccac attttcacca cctgcttttt tgttcaagaa
      121 ttttaaaatc atctggcgaa ttgcacttgt acccaataat ccaattcccg caccaatagg
      181 ggtaatcagt gatacatcag cattgatata aattaaaata ggacgcattg agccagcaat
      241 aacgctacac aagatagcct ctgccagcac tcgtttaggt gtatctgttt taccatacag
      301 aaatgacttg gtaatagatg taaaaaaagc aatgataacg ccacaaatcc agccattatg
      361 attgcttaaa aacattacaa gataattcca agcctgcgta tatatatcag ggttcttttc
      421 aggcattgta ttcatactcc accccgtttc gag
//
LOCUS       DANLUT010000323          453 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.324, whole genome shotgun sequence.
ACCESSION   DANLUT010000323 DANLUT010000000
VERSION     DANLUT010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.324"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..226)
                     /locus_tag="PXB38_002604"
     CDS             complement(<1..226)
                     /locus_tag="PXB38_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354836.1"
                     /translation="MTTQISTQIITFNNQDLITFEQNGTHYTAMKPICENIGLCWDGQ
                     RQRIQRDEVLSMGTVIITVPTTSGDQQMICL"
BASE COUNT          111 a           87 c          111 g          144 t
ORIGIN      
        1 ggaggcagat catttgttga tctccgctgg tagtaggtac ggttatgata accgtaccca
       61 tagaaagcac ttcatctcgt tgaatacgtt ggcgttgtcc gtcccagcat aaaccgatat
      121 tttcgcaaat cggtttcatt gcggtgtaat gtgtgccgtt ttgctcaaag gtgattaaat
      181 cttggttgtt gaatgtgatg atttgagttg atatttgagt tgtcattttg taatcctcgt
      241 actatttgtt gaaaacaagc cacttctgac agtggcgtcg ggaggttcag aaaccccgta
      301 caaggtaagg gctggacgta tttcctttcg gtcttgtatt agtcgccctc ccgacatagt
      361 caggattacg gatataaaaa aatcgcctag tggcgattag tgaactatcc gccttgtaca
      421 tattgaggtt ctgacacctt aggcggaata gta
//
LOCUS       DANLUT010000324          452 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.325, whole genome shotgun sequence.
ACCESSION   DANLUT010000324 DANLUT010000000
VERSION     DANLUT010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.325"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>452
                     /locus_tag="PXB38_002605"
     CDS             <1..>452
                     /locus_tag="PXB38_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5354837.1"
                     /translation="PEIRRKKLTEWFNTRDIPEKEKSYISQLKSGKSSFGERAARRLE
                     NEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIHLIDFKAKAGETGFINTNYPEI
                     IQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINKGDVVFIDTT"
BASE COUNT          166 a           78 c           85 g          123 t
ORIGIN      
        1 tgccagagat tcgcagaaaa aaacttacag aatggttcaa cacaagagat attccagaaa
       61 aggaaaaaag ctacatatca caattaaaat caggaaaatc atcttttggt gagcgtgcag
      121 caagaagatt agagaatgaa tatggaatgc ctagctttta tttggactat gatgaagaaa
      181 cagaaagtgc gattgtgtct gctatgtcaa ttcaagaaac acagtctcat caatacccca
      241 ttcatctaat tgacttcaaa gctaaggcgg gcgaaacagg ttttatcaat actaactatc
      301 ctgaaattat tcaatctatc tatttctctt tagacggctt gcttgaaatt gtagggcgaa
      361 aatcaagcaa tggcattgag atgatcacca ttccaactga tagtatgagc ccaacaataa
      421 acaaagggga tgttgttttt attgatacta ca
//
LOCUS       DANLUT010000325          445 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.326, whole genome shotgun sequence.
ACCESSION   DANLUT010000325 DANLUT010000000
VERSION     DANLUT010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.326"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..287
                     /locus_tag="PXB38_002606"
     CDS             <1..287
                     /locus_tag="PXB38_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354838.1"
                     /translation="GKALDETCILKAGTHEFITRDSFIFYRHIRIDSLDEIKANIEAG
                     YFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAIRQSACPDILAEP"
BASE COUNT          154 a          102 c           70 g          119 t
ORIGIN      
        1 acgggaaagc acttgatgaa acttgtattt taaaggcagg aacacacgaa tttatcacac
       61 gggacagctt tattttctac cgccatataa gaatcgattc gttagatgag attaaggcaa
      121 atatagaagc cggttatttc attcaaaaag ccctaattaa tgatgaagcc tatcaacaaa
      181 tattaaaagg cgtactatcg tcaaaatcag taacgcctag atataaacgc ttcctaaaaa
      241 atgcaatccg ccaaagtgct tgccctgata ttctagccga accttaagcc gttgatgaaa
      301 attagcgact ttttgccctt taaccactac caaaaccgct aatatttccc ctctaaaagt
      361 ggctaacagt gggtaaaaat caaagttacc cacttaaccc actgtaaccc acttgcttcc
      421 cactggctat aaagccttat atatc
//
LOCUS       DANLUT010000326          442 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.327, whole genome shotgun sequence.
ACCESSION   DANLUT010000326 DANLUT010000000
VERSION     DANLUT010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.327"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            47..>442
                     /locus_tag="PXB38_002607"
     CDS             47..>442
                     /locus_tag="PXB38_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354839.1"
                     /translation="MGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLK
                     NRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRL
                     IALEKLVAEQGIILSETQVQALERKKEDEI"
BASE COUNT          145 a           78 c          103 g          116 t
ORIGIN      
        1 ccctctcatt aaacacaaga ccggtttatt aaatttagca gaagaactgg gtaatatttc
       61 tcaagcctgc aaagtaatgg gaatgagccg agatacattc tatcgttatc aacaagcggt
      121 tgagcaaggt ggtgttgaag cattgctgaa tcaaaataga cgcgttccca acttaaaaaa
      181 tcgtgttgat gaggcaatag agcaagctgt tgtgaagttt gctcttgata acccggcatt
      241 tggacaggta agagtgagta acgaactccg taaacaaggc atctttgttt cagcaggagg
      301 tgtacgttcg atttggttac gtcatcatct tgccaatttt aagcaaagat taatcgccct
      361 ggaaaaactg gttgcagaac aaggtattat actcagtgaa acacaggtac aagccttaga
      421 gcgtaagaaa gaagatgaga tt
//
LOCUS       DANLUT010000327          441 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.328, whole genome shotgun sequence.
ACCESSION   DANLUT010000327 DANLUT010000000
VERSION     DANLUT010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.328"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            56..283
                     /locus_tag="PXB38_002608"
     CDS             56..283
                     /locus_tag="PXB38_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354840.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
     gene            298..>441
                     /locus_tag="PXB38_002609"
     CDS             298..>441
                     /locus_tag="PXB38_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HDL5354841.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYH"
BASE COUNT          177 a           65 c           95 g          104 t
ORIGIN      
        1 ttaatcaagt acgctaaagc gtagcaaata aactaaatgt ggaggatctc acaaaatgaa
       61 taaaaagaaa agagctcaag atatgcatag agctgatatt cgagctgaat tgatgaagaa
      121 aggaataaca ttttctcagt tagggattga gaatgggctt tccaaaacaa cagtaagaaa
      181 tgctcttgat aaaccttata aaaacggtga agaaattatc gcaaaagcat taggaaaaac
      241 gccagccgaa atatggccta gtcgttaccc tgatgttgca taacaaggat agctgttatg
      301 aaagattggt ttagtgcaaa agaattagca ggtattagtg gcttatcaaa atacccaaca
      361 aatgtaacta gacaagccaa aaaagaacaa tgggcaactc gtccattgaa aggggttaaa
      421 ggaggtggtt ttgaatatca c
//
LOCUS       DANLUT010000328          434 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.329, whole genome shotgun sequence.
ACCESSION   DANLUT010000328 DANLUT010000000
VERSION     DANLUT010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.329"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..432
                     /locus_tag="PXB38_002610"
     CDS             <1..432
                     /locus_tag="PXB38_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL5354842.1"
                     /translation="FEENLNYSATALLRTFPKYFAQYNVVLYARNKQAIANRVYANRM
                     GNGNERSGDGWKYRGRGLIQITGKANYIDFAKWEGLPSLVTDPDQITKNLALTVQVAV
                     WYWVSRKLSEFSDILTVTKKINGGTHGLTQRTAYYKKLMAD"
BASE COUNT          135 a           81 c          100 g          118 t
ORIGIN      
        1 tttgaagaaa accttaacta ttctgcaact gctctattgc gaacattccc gaaatacttt
       61 gctcagtaca atgtggtgct ttatgcgaga aacaagcaag ccattgctaa ccgtgtttac
      121 gctaaccgaa tgggaaatgg taatgagcga agtggcgacg gttggaaata tcgtggtcgt
      181 ggcttgattc agattactgg aaaggcgaat tatattgatt ttgcaaaatg ggaaggctta
      241 ccaagtctag tgactgaccc cgaccaaatc actaaaaatc tagcattgac agtacaggtg
      301 gctgtttggt actgggtaag tcgcaagtta tccgaattta gcgacattct tactgttact
      361 aaaaagatta atggcggaac gcacggtcta actcagcgta cagcttatta taaaaagcta
      421 atggcggact aaat
//
LOCUS       DANLUT010000329          432 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.330, whole genome shotgun sequence.
ACCESSION   DANLUT010000329 DANLUT010000000
VERSION     DANLUT010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.330"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(47..427)
                     /locus_tag="PXB38_002611"
     CDS             complement(47..427)
                     /locus_tag="PXB38_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354843.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
BASE COUNT          129 a           81 c           75 g          147 t
ORIGIN      
        1 taaggatagt atgattgcat ctctaggatc attttgaatc attggtctat tcattttgtg
       61 agcccttaat ccattctaaa attctctctc tgtcgaaaaa aagcatatta ttacagcaaa
      121 cacaagtgac aataacggct gttctcgctt tttggtctaa ccaatatttt gttccttccc
      181 gttcattgaa atgcaaagaa tgaaattcag gagctgcaaa tttcataact tcatcaggag
      241 atggctctat tcggtatgga atggttggaa caccgataat tttctctccg cataattccg
      301 taaaagtgtc atagccatcg tgtaaataat gttcttggct attacaaata gggcaagtta
      361 aattccgccc agtacgttgc gtgataaaat ccgcaaactg ttcaggttta atgcgtttat
      421 tattcatttt aa
//
LOCUS       DANLUT010000330          419 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.331, whole genome shotgun sequence.
ACCESSION   DANLUT010000330 DANLUT010000000
VERSION     DANLUT010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.331"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>419
                     /locus_tag="PXB38_002612"
     CDS             <1..>419
                     /locus_tag="PXB38_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5354844.1"
                     /translation="ESANLTKKIQAEATARGAAVTQLQNVDAQQSQLISAVTAKADNA
                     LSGLEAEKTARANADKAESQAREALTARMSDAESNIATIQRTVATNAQSISEVSQNLN
                     AKIDNINIGGRNLLRDSEFNAYNKWGNPQIDFTENANR"
BASE COUNT          156 a           74 c           90 g           99 t
ORIGIN      
        1 gaaagtgcga atttaacgaa aaaaattcaa gctgaagcaa ccgctcgtgg ggctgctgtt
       61 acacagttac aaaatgttga tgctcaacaa tcacaactga tttctgctgt cacagcaaaa
      121 gctgataatg ccttatccgg tttggaagca gaaaaaacag ctcgagcaaa tgctgataaa
      181 gctgaatcac aagcccgtga agcattaaca gcaagaatga gtgatgcgga aagcaatatt
      241 gcaactattc aacgtacggt agcaactaat gcccaaagca ttagtgaagt cagtcagaat
      301 ttaaatgcta agattgataa tattaatatc ggaggtcgga atttattaag agacagcgag
      361 ttcaatgcgt acaataaatg gggtaatcca cagattgatt ttacagaaaa tgcaaatcg
//
LOCUS       DANLUT010000331          398 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.332, whole genome shotgun sequence.
ACCESSION   DANLUT010000331 DANLUT010000000
VERSION     DANLUT010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.332"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..210)
                     /locus_tag="PXB38_002613"
     CDS             complement(<1..210)
                     /locus_tag="PXB38_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HDL5354845.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHP"
     gene            complement(214..>398)
                     /locus_tag="PXB38_002614"
     CDS             complement(214..>398)
                     /locus_tag="PXB38_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5354846.1"
                     /translation="TCTWIYRSAECGYTGKQYFDEKDKATSDPKADKCSHCLNGCELR
                     GNQRNFGGFVSVNKLG"
BASE COUNT           92 a           92 c           84 g          130 t
ORIGIN      
        1 agggtgcgaa tgcactactg ctaccagttc gcctttttct tctgctttga tgtaatcaag
       61 atcggagatt tcaaagtaat tggctttgtc ttccgcttgg ttttcgcaag ggataaatcg
      121 atttttattg ccgtcaaaaa caacaaagcc gcacatttcg tgcggttcgt gttggagggc
      181 gtagtcgatt atttgttgtt ccaattccat tcattacccc aatttattca ccgatacaaa
      241 tccaccaaaa ttacgctgat tgcctcgcaa ttcacaaccg ttcaggcaat ggctgcattt
      301 atcggctttt gggtctgatg ttgccttgtc tttttcatca aaatactgct tgccggtgta
      361 gccacattcc gccgagcggt aaatccaagt gcaggtgt
//
LOCUS       DANLUT010000332          397 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.333, whole genome shotgun sequence.
ACCESSION   DANLUT010000332 DANLUT010000000
VERSION     DANLUT010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.333"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>397
                     /locus_tag="PXB38_002615"
     CDS             <1..>397
                     /locus_tag="PXB38_002615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354847.1"
                     /translation="KEHHFGFPNIIESSNNTLPHQEINLLAVQTPSTESLRKLLPYFE
                     MLTGIQVNIDTYSFEQIPAVLENDQVEKKYDLVRIDMESLPYFAEKYFLPLNSIGREH
                     LELCFSASIIERFCLFQDKLYAIPFDPSIQ"
BASE COUNT          137 a           71 c           64 g          125 t
ORIGIN      
        1 aaaagagcat cactttgggt ttccaaatat tatagaaagc tcaaataata cactacctca
       61 tcaagaaatt aatttacttg cagtccagac accatcaaca gaatctctta gaaaattatt
      121 accttatttt gaaatgctta ccgggattca agtcaatatt gatacatact catttgagca
      181 aattcctgcg gtgctggaaa atgatcaagt agagaaaaaa tatgatctgg tgcgaattga
      241 tatggaaagt ctgccttatt ttgcggaaaa atatttctta ccccttaata gtataggaag
      301 agaacaccta gaattatgtt tttccgcaag tattattgaa cgcttttgtc tgtttcaaga
      361 taaactctat gctattccgt ttgacccaag catacag
//
LOCUS       DANLUT010000333          393 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.334, whole genome shotgun sequence.
ACCESSION   DANLUT010000333 DANLUT010000000
VERSION     DANLUT010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.334"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(25..>393)
                     /locus_tag="PXB38_002616"
     CDS             complement(25..>393)
                     /locus_tag="PXB38_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354848.1"
                     /translation="EFGELCGGIARNNPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQF
                     ENHRLNGYRFDISVAVHCLYDIERIKDRGKYSRFFGILHHLALINRFTLNDCLAHAYD
                     QIKDRKGEMQAGIWVKEDDL"
BASE COUNT          115 a           78 c           67 g          133 t
ORIGIN      
        1 gtttcggttt ttatagctta ggtactataa atcgtcttct ttaacccaaa tcccagcttg
       61 catttcgccc ttgcgatctt tgatttggtc gtaggcgtga gcgaggcagt cattaagcgt
      121 aaatctattt attaaggcta aatggtgtaa tatgccaaaa aaacggctat atttacctct
      181 gtctttaatg cgttcaatat catatagaca atgaacagcg accgaaatat caaatctgta
      241 accatttaat ctatgatttt caaattgtac agggtaaata ggttgttttt cttgttttgc
      301 tttaataata cagacaacaa tcaaatcccc aatcgcatct ttaatcattt caggattatt
      361 gcgggcaatg cctccgcaga gttcgccaaa ctc
//
LOCUS       DANLUT010000334          392 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.335, whole genome shotgun sequence.
ACCESSION   DANLUT010000334 DANLUT010000000
VERSION     DANLUT010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.335"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(60..>392)
                     /locus_tag="PXB38_002617"
     CDS             complement(60..>392)
                     /locus_tag="PXB38_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354849.1"
                     /translation="IEHKVQNVKPIKNIILNSSQNKVFVFYGRNFTMDLIEARELKHF
                     ELVELPYSGHATVIPLTVPEGKTKEWLSNLTVDPDLAALGGITDLIDEIWEIYQNSNM
                     RLYKFLDS"
BASE COUNT          131 a           67 c           46 g          148 t
ORIGIN      
        1 taggtatatc atctatataa tgtgttttag tcccgaataa ttatttctgg catataaaac
       61 taactatcaa ggaatttata taatcgcata ttactatttt gatatatttc ccaaatttca
      121 tctattaaat ccgttattcc tcctaatgca gctagatcag gatcaactgt aagattactt
      181 aaccattctt tagtctttcc ttcaggaaca gttaaaggta ttactgttgc atgcccagaa
      241 taaggtaatt ccacaagttc aaaatgtttt aactctcttg cttcgattaa atccattgta
      301 aaatttctcc catagaaaac aaatacttta ttttgagaag aatttaaaat aatattcttg
      361 ataggtttaa cattctgtac cttatgctca at
//
LOCUS       DANLUT010000335          379 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.336, whole genome shotgun sequence.
ACCESSION   DANLUT010000335 DANLUT010000000
VERSION     DANLUT010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.336"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>379
                     /locus_tag="PXB38_002618"
     CDS             <1..>379
                     /locus_tag="PXB38_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354850.1"
                     /translation="SIEVAIQYVKKNQLSIRQLVESGANNYRVFDYKILNNSDFSKYD
                     IVIAALGNIASQKLITRLYSLNKRPLIITCFSGSIFGNAESISSRINSDILLVNNESD
                     RNIAQSIASEYGLEVTILNYGLIN"
BASE COUNT          132 a           47 c           63 g          137 t
ORIGIN      
        1 tagtattgaa gttgcaatac aatatgtaaa aaagaatcaa ctttctattc gtcaattagt
       61 tgaaagtgga gcaaataact atcgtgtctt tgattataaa atattgaata attcggattt
      121 ttcaaagtat gatatagtta ttgcagcact aggtaatata gcctcgcaga aactaattac
      181 acgtttgtat tccttaaata aaagacctct gattattacc tgtttctcag ggagtatttt
      241 tggtaatgca gaaagtatat catctcgtat taattcagat attttactcg taaataatga
      301 gagtgataga aatattgctc aatctatagc atctgagtac ggtttggaag ttactatttt
      361 aaattatggg ctaattaat
//
LOCUS       DANLUT010000336          369 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.337, whole genome shotgun sequence.
ACCESSION   DANLUT010000336 DANLUT010000000
VERSION     DANLUT010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.337"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            126..>369
                     /locus_tag="PXB38_002619"
     CDS             126..>369
                     /locus_tag="PXB38_002619"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354851.1"
                     /translation="MSFVEKSKTLTINIDERDLALHYEIAFHFVMKDVQGISEKSKER
                     ILKIVNSVGYGKRSYFDEVYDKFFKGIDFKWAEYNYW"
BASE COUNT          130 a           34 c           76 g          129 t
ORIGIN      
        1 atatggtagt cggtagataa tttatccagc agcataaata cttatgctac tatttcagaa
       61 ggtcagtact tgaggggtaa ttttggtgaa ttcatcttgg ttaaatagct tgtttggtta
      121 agtgtatgag ctttgttgaa aaaagtaaga ctcttacaat aaatattgac gaaagagatt
      181 tggcattaca ttatgaaata gcctttcatt ttgttatgaa agatgtccaa ggtatatcag
      241 agaaaagtaa agaaagaata ctaaaaattg ttaattctgt tggatatggg aaacgaagtt
      301 attttgacga agtttatgat aaattcttca aaggaattga ttttaaatgg gctgaatata
      361 attattggt
//
LOCUS       DANLUT010000337          368 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.338, whole genome shotgun sequence.
ACCESSION   DANLUT010000337 DANLUT010000000
VERSION     DANLUT010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.338"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
BASE COUNT          114 a           66 c           51 g          137 t
ORIGIN      
        1 atttctttcc ttcttgacta cctcttgcgt tgtagaaagc tcggtggata ataaataaat
       61 taggtgtgtt agatattact gacacactat ctatttttgc ccttcttaac gtggataata
      121 cggtttttat tgctaactca aaatcattaa caagaatact ctctttgtac tcattcccac
      181 tttgtcgtac aaaatcaatc tggtatgagc ctattttatc taagctgcac atttcttgaa
      241 tctgctctaa atatatcact gaatggttgt ttggatctct taatcttgat tcttgaaaaa
      301 ggaataaacc tattacaatt gctgaaaaaa gaataattag taagacgtta attaccttta
      361 catccata
//
LOCUS       DANLUT010000338          358 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.339, whole genome shotgun sequence.
ACCESSION   DANLUT010000338 DANLUT010000000
VERSION     DANLUT010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.339"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(74..>358)
                     /locus_tag="PXB38_002620"
     CDS             complement(74..>358)
                     /locus_tag="PXB38_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354852.1"
                     /translation="FNKILNPMYSTIASYSTQDDGSLNAKYVVGTGEESDGAVTKFVT
                     ITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
BASE COUNT           91 a           80 c           70 g          117 t
ORIGIN      
        1 gctgtaaaca ttgtgcctcc tagtacaaaa aaaccgcttg gtttccctaa gcggttctaa
       61 tctataagaa ctattacact acaatctgcc ccgtctcttt taagtgattg taaatacgac
      121 ctaacataat ctgcgttggc gttttgccaa tatcctcttt tgttagcggt gcatcagtaa
      181 tcgccttggc ggactgtgca tcaatgtatt tgtactcgct ggtaattgtc acaaatttgg
      241 tcacagcacc atcgctctcc tcacctgtgc caacgacata tttagcattg agtgagccgt
      301 catcttgagt tgagtaactt gcgatagttg agtacatcgg gtttaagatt ttgttaaa
//
LOCUS       DANLUT010000339          353 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.340, whole genome shotgun sequence.
ACCESSION   DANLUT010000339 DANLUT010000000
VERSION     DANLUT010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.340"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(<1..>353)
                     /locus_tag="PXB38_002621"
     CDS             complement(<1..>353)
                     /locus_tag="PXB38_002621"
                     /inference="COORDINATES: protein motif:HMM:NF023638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354853.1"
                     /translation="AFVHNGVIYAPFMLAFRHGYDDLRIAWVKSFDNGNTWTTPEILM
                     DYHPQNPTLGWHCFSMGIVGNRLFMLVEERDVASKKMVRSFLYSRVMTKNFFVTGGIS
                     QSGNVVTVELEEHGL"
BASE COUNT          117 a           86 c           58 g           92 t
ORIGIN      
        1 aataacccgt gttcttctaa ttctacggtt actacattac cggattgcga aatgccacct
       61 gttacaaaaa aattcttagt cattactcgg ctatacaaga atgaccgaac cattttctta
      121 ctcgccacat cacgctcttc tacaagcata aataaccgat ttccaacaat gcccatagaa
      181 aaacagtgcc aacccaatgt tggattttgc ggatgatagt ccattaaaat ttctggcgtc
      241 gtccaagtat tgccattatc aaaggatttg acccaagcaa tacgcaagtc atcatagccg
      301 tggcggaaag ccaacataaa gggggcataa atcactccat tatgaacaaa tgc
//
LOCUS       DANLUT010000340          353 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.341, whole genome shotgun sequence.
ACCESSION   DANLUT010000340 DANLUT010000000
VERSION     DANLUT010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.341"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>353
                     /locus_tag="PXB38_002622"
     CDS             <1..>353
                     /locus_tag="PXB38_002622"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354854.1"
                     /translation="LHNDKSEEGSIIDYRATAHKFLGGVHINTGVINTPPESAGNTEI
                     VNAKWVNSQIEKNNTEKVLFSGSTQEPVSVQVSSLRGEIHVLASIRGVKRWDSFSLWS
                     SNNTYIGASEYGGENA"
BASE COUNT          116 a           63 c           92 g           82 t
ORIGIN      
        1 ctacacaatg ataaaagcga agagggtagc attattgact atagagcaac tgcccataaa
       61 tttttgggag gtgtgcatat taacacaggg gtgattaata ctccgcccga atcagcggga
      121 aacacagaaa ttgtcaatgc taagtgggtt aactcgcaaa tcgaaaaaaa taacaccgaa
      181 aaggtgttat ttagtggctc tacacaagag cctgtgtcgg tgcaggtaag tagtttgcga
      241 ggcgaaatcc acgtgttggc aagtattaga ggcgtaaaac gttgggatag ctttagcctc
      301 tggagcagca ataataccta tatcggagcc tcagaatatg ggggcgaaaa tgc
//
LOCUS       DANLUT010000341          344 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.342, whole genome shotgun sequence.
ACCESSION   DANLUT010000341 DANLUT010000000
VERSION     DANLUT010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.342"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            complement(6..82)
                     /locus_tag="PXB38_002623"
     tRNA            complement(6..82)
                     /locus_tag="PXB38_002623"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Pro,seq:tgg)
     gene            complement(107..182)
                     /locus_tag="PXB38_002624"
     tRNA            complement(107..182)
                     /locus_tag="PXB38_002624"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(147..149),aa:His,seq:gtg)
     gene            complement(212..288)
                     /locus_tag="PXB38_002625"
     tRNA            complement(212..288)
                     /locus_tag="PXB38_002625"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(252..254),aa:Arg,seq:ccg)
BASE COUNT           91 a           91 c           80 g           82 t
ORIGIN      
        1 taaattggtc ggcgagatag gatttgaacc tacgacccac tggtcccaaa ccagttgcgc
       61 taccaagctg cgctactcgc cgtctgatac tcacaagagt attgaatggg gtggctaatg
      121 ggattcgaac ccacgacaac tggaatcaca atccagggct ctaccaactg agctatagcc
      181 accattgtgt tgatagtgcc gcattgacat ctggcgcgct cgacaagatt cgaacttgcg
      241 acctttggct ccggaggcca acgctctatc caactgagct acgaacgctt cgatttacat
      301 caattcaact taatgcgtcg caacggaggc gtatattata gatt
//
LOCUS       DANLUT010000342          340 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.343, whole genome shotgun sequence.
ACCESSION   DANLUT010000342 DANLUT010000000
VERSION     DANLUT010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.343"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            103..>340
                     /locus_tag="PXB38_002626"
     CDS             103..>340
                     /locus_tag="PXB38_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354855.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGC"
BASE COUNT           90 a           39 c          108 g          103 t
ORIGIN      
        1 tatgaaagag ttaaaaattg aggattgcca atttgtttcg gcaggcttgc acttgttatt
       61 gtaggagctg ttgctggagc tgcatattat gttgggaata gtatgatttc tggggaaaaa
      121 atgacttggg agagtttggg agcatcagct ataggtgggg ctattggtgg cggtattgga
      181 gcaacaatga aagctggtgc ggtgacagcg tcaaccttat ctgctttagg tggtggtatg
      241 ggggagggct tgtataaaag tacttctcaa ggtatcaaaa atagtattgg tataaaggcg
      301 agttgcaatc aatcaggttc ggattatggt gatggatgtg
//
LOCUS       DANLUT010000343          330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.344, whole genome shotgun sequence.
ACCESSION   DANLUT010000343 DANLUT010000000
VERSION     DANLUT010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.344"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            <1..>330
                     /locus_tag="PXB38_002627"
     CDS             <1..>330
                     /locus_tag="PXB38_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354856.1"
                     /translation="GQAGSGKSHLLGDFVQKRQNSGKYSLLLLGQDFTEKSNAWNQIL
                     SKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLWNNQLNGLIELVSQY
                     PNIGLVL"
BASE COUNT          115 a           46 c           67 g          102 t
ORIGIN      
        1 ctggtcaagc tggtagtgga aaatctcatt tattgggtga ttttgtccaa aaaagacaaa
       61 attctggaaa gtattctttg ttgttattgg ggcaggattt tacagaaaaa tccaatgctt
      121 ggaatcaaat cttatccaaa caattaaatc ttaatatcac acccgaagta tttttatccg
      181 cattagatag tatcggagaa atgcaaaaag aacgggttat tttagccata gacgccttaa
      241 atgagggtga agggaaatca ttatggaata accaacttaa tggattaatt gagttggtaa
      301 gtcaatatcc aaatattgga ctggttctga
//
LOCUS       DANLUT010000344          297 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.346, whole genome shotgun sequence.
ACCESSION   DANLUT010000344 DANLUT010000000
VERSION     DANLUT010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.346"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            107..>297
                     /locus_tag="PXB38_002628"
     CDS             107..>297
                     /locus_tag="PXB38_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5354857.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKALNKRIEALNKTKAVN"
BASE COUNT          127 a           45 c           54 g           71 t
ORIGIN      
        1 aagcattaag agaagaatta tcaaaccttg agcaacgtaa aatccaaaaa aacggaatgc
       61 ttgaggtgat tgagtatcgt attagccaaa tcaaggagtt actgaaatga aacgcaataa
      121 agtagaaagc tatactatcc gcttattaaa aaataatcat acaaaacgct acttcggaga
      181 agttatatta aacggcataa aagaaatcag cacggcagag atgatgtctg aaattaacgc
      241 tattaaggca ttaaataagc gtattgaagc tctgaataaa accaaagccg ttaattt
//
LOCUS       DANLUT010000345          296 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.347, whole genome shotgun sequence.
ACCESSION   DANLUT010000345 DANLUT010000000
VERSION     DANLUT010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.347"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            36..236
                     /locus_tag="PXB38_002629"
     CDS             36..236
                     /locus_tag="PXB38_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5354858.1"
                     /translation="MNLTSYLSDRPRGFKADFAKKLGISKSYLRQVETGYSPMPAYLA
                     KKIEEVTNGEVAKSELRPDLWD"
BASE COUNT           99 a           57 c           58 g           82 t
ORIGIN      
        1 aaactcaatc taatttttac ttaacgggag tgttaatgaa cttaactagt tatttgtcag
       61 atcgccctcg tggtttcaaa gctgactttg caaaaaagct tggtatttcc aaatcttatt
      121 tacgacaagt tgaaacaggg tattcaccaa tgccagccta tcttgctaag aaaattgaag
      181 aagtcacgaa tggcgaagta gccaaatctg agcttcgccc cgatctgtgg gattaattta
      241 cccaaaggaa tgtgcaatgc cacgcaatga attaacaaaa aatgcaagag cgattg
//
LOCUS       DANLUT010000346          294 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.denovo.348, whole genome shotgun sequence.
ACCESSION   DANLUT010000346 DANLUT010000000
VERSION     DANLUT010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.denovo.348"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            52..>294
                     /locus_tag="PXB38_002630"
     CDS             52..>294
                     /locus_tag="PXB38_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5354859.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNN"
BASE COUNT          111 a           44 c           51 g           88 t
ORIGIN      
        1 gatttaatgc atttaatgaa atcataatgc gaaatttgca ttggttagga tatgaaaaac
       61 atagaaacaa aatggttaga agatttctta acgctagaag aatgtcgcca tttttctcag
      121 gcagcagaaa aaagaaattt gtcacaatct gcatttagca gacgtatttt agctttagaa
      181 gaagttgtgg gagtgaagtt atttgatcgt acctctattc cattacaact cacagaacaa
      241 ggtaagctat ttcattcaca aacgcgaaac ttattacaac aattacagaa taat
//
LOCUS       DANLUT010000347        17431 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995848-rid16719933.guided.035, whole genome shotgun sequence.
ACCESSION   DANLUT010000347 DANLUT010000000
VERSION     DANLUT010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995848
            Sequence Read Archive: SRR18050797
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574654.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574654.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:10:07
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,496
            CDSs (with protein)               :: 2,496
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 32 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17431
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995848-rid16719933.guided.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: WI"
                     /collection_date="2020-11-06"
                     /collected_by="University of Wisconsin Veterinary
                     Diagnostic Laboratory, Madison, WI"
     gene            75..767
                     /gene="modB"
                     /locus_tag="PXB38_002631"
     CDS             75..767
                     /gene="modB"
                     /locus_tag="PXB38_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5354860.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIVHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGATPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            754..1809
                     /gene="modC"
                     /locus_tag="PXB38_002632"
     CDS             754..1809
                     /gene="modC"
                     /locus_tag="PXB38_002632"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5354861.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVKQFPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVWKIETHLERVDLAIQVENQQIWSTISLWSFNEL
                     AIQPGQEVYLQIKSVSL"
     gene            1864..2298
                     /locus_tag="PXB38_002633"
     CDS             1864..2298
                     /locus_tag="PXB38_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5354862.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            2288..2623
                     /locus_tag="PXB38_002634"
     CDS             2288..2623
                     /locus_tag="PXB38_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5354863.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            2827..4116
                     /locus_tag="PXB38_002635"
     CDS             2827..4116
                     /locus_tag="PXB38_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5354864.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLVSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(4191..5645)
                     /locus_tag="PXB38_002636"
     CDS             complement(4191..5645)
                     /locus_tag="PXB38_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5354865.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            5848..6708
                     /locus_tag="PXB38_002637"
     CDS             5848..6708
                     /locus_tag="PXB38_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5354866.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKEVDPIAIIKAKGIDD
                     TNYGLKLGNSKETIEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVT
                     VKGLKTEKLPTEGTATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLI
                     VLEEGTINNTQISSTVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFG
                     LAGTRGDIQK"
     gene            6904..8313
                     /locus_tag="PXB38_002638"
     CDS             6904..8313
                     /locus_tag="PXB38_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5354867.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSISVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYPRQNKEVFFTLEKLF"
     gene            8458..8931
                     /gene="gpt"
                     /locus_tag="PXB38_002639"
     CDS             8458..8931
                     /gene="gpt"
                     /locus_tag="PXB38_002639"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5354868.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            9044..9667
                     /gene="gmk"
                     /locus_tag="PXB38_002640"
     CDS             9044..9667
                     /gene="gmk"
                     /locus_tag="PXB38_002640"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5354869.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGHFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            9757..11154
                     /locus_tag="PXB38_002641"
     CDS             9757..11154
                     /locus_tag="PXB38_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5354870.1"
                     /translation="MKLSKLAFYVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(11267..12112)
                     /locus_tag="PXB38_002642"
     CDS             complement(11267..12112)
                     /locus_tag="PXB38_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5354871.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(12253..15348)
                     /gene="ttrA"
                     /locus_tag="PXB38_002643"
     CDS             complement(12253..15348)
                     /gene="ttrA"
                     /locus_tag="PXB38_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5354872.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIVNGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGASYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALADYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            complement(15338..16369)
                     /gene="nrfD"
                     /locus_tag="PXB38_002644"
     CDS             complement(15338..16369)
                     /gene="nrfD"
                     /locus_tag="PXB38_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5354873.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWWSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            complement(16371..17099)
                     /gene="ttrB"
                     /locus_tag="PXB38_002645"
     CDS             complement(16371..17099)
                     /gene="ttrB"
                     /locus_tag="PXB38_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5354874.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
BASE COUNT         4680 a         3901 c         3977 g         4873 t
ORIGIN      
        1 cttctgaacg aagaaaaatc tatccctctc ccacaagggg cgagggtaag cttataaccg
       61 aatagtttta gattatgctt aatttcaccc cacaagaact caatgcgatt gttttaagcc
      121 taaaagttgc ctccattgcc gtagtgcttg cattaccgct tgcggtgtgg gtggcgtggc
      181 tgcttgcccg caaacagttt tggggcaaaa atctactcaa tggtattgtg catctccctc
      241 tggttttacc gccggttgtc attggctatt tgttactgat ctcgatggca aaacgagggg
      301 taatcgggca atatttgtgg gaatggtttc atttcagctt gagtttttcg tggaaagggg
      361 ctgtgcttgc ctcaatggtg atggcgtttc cgctgatggt gcgttctatc cgtttagctt
      421 ttgaagccgt cgatcctaaa ttggagcaag ccgccagaac gcttggggcg acaccgttaa
      481 aagtattttt cacgctcacc ttaccgctct ctttttcagg cattattgcc ggtggcgtgc
      541 tgggttttgc ccgctctttg ggggagtttg gggcaaccat cacctttgtc tccaacattc
      601 ccaaccaaac ccaaaccatt cctgccgccc ttttcacctt tattgaaacc cccgatggcg
      661 aaatggctgc cgcccgtttg tgcttggtgg cgattctgat ttcactcatt gccctattct
      721 gttcggaatg gctggcagaa aggcaaaaac gctatgctca aacttaaact tcttcagcaa
      781 ctcggcaatc tgacgctcaa tgtcaatctc gatttgccga ataaaggaat caccgctatt
      841 ttcgggcgtt ccggtgccgg taaatccagc ctgattaatt taattgcggg gctttcaacc
      901 gctcaagccg gctttatcga attaaacggt caggtgctgt ttgacagcca aaacggcatc
      961 aatttaccac ctgaaaaacg caacattggc tatgtgtttc aagagcatcg ccttttccct
     1021 cattattcgg tggaaaaaaa cttaaaatat ggctacaagc ggtcggattc tgcggatttt
     1081 ttgcaaattg tggaactgtt aggcattgcc cctttgctta atcgctatcc ggcaagcctt
     1141 tccggtggcg aaaaacaacg tgtggcgatt gggcgggcgt tattaagctc accgaatatt
     1201 ttgctgatgg acgaaccatt atctgccctc gatctccctc gtaagcaaga gctactggac
     1261 tatttagata aattatccgc tcggcttgaa ataccgattc tgtatgtcag ccacagttta
     1321 gaggaagtag ttcgattggc agatcatctt gtgctgttgg aaaacggcaa agtaaccgca
     1381 tttgataccc tttcagcggt ttggcacagc tcggcatttt ccgcttggca gccaaatcat
     1441 cagcgaatta gcctgcttga attaccggtg gaagaaacac ttccccacta taatatgctt
     1501 ggcttgagct tgaacgcaca gcgattatgg gtgaagcaat tccctcgcca tcaaataggc
     1561 gagaagctaa gggtgactat tgccagcaaa gaggtttcga tcagcttaca aaaaccgact
     1621 caaagctcaa ttcgtaatgt gttaaaaggc aatgtttgga aaattgaaac gcatttggag
     1681 cgggttgatt tagcaattca agtcgaaaat cagcaaattt ggagtacgat cagcctttgg
     1741 tcttttaatg aattagcaat ccaaccgggg caagaggtct atcttcaaat caaaagtgtt
     1801 tctttatagg cttgcaaatt tacgctaaaa tatgaccgct tgttaatttc caaaagagac
     1861 attatgccaa tcgttaatca atctgccctc gtgccttata gtgccgagca aatgtatcaa
     1921 cttgttaatc agtatgaaaa ataccccgaa tttttatccg gctgcgtgag taccaaaacc
     1981 cttagcaccg gcgaaaatga attaaaggca gagttacata ttcagaaatt aggcattagc
     2041 caaaccttca gtacccacaa taaaatgacg ccgccctata aaatcgagat ggcattaatt
     2101 gaagggcctt tccgccattt acacggagct tggacattca ccccctttga tgagcaaagt
     2161 tgcaaaattg ccctgcaatt aaattttgaa ttttccagcc caattgtagc aatggtgttc
     2221 ggcaaggtgt tcaacgaatt aactttaaaa atggtaaatg ctttcaaaca acgtgcaaaa
     2281 gaggtgtatg gtgtctgaac aacgtcaaaa tccagaagaa caaaaaagtg aagaacagaa
     2341 aattaatgtt gaggtgcttt atgcttaccc tgataaatat tttctgaaaa aactgcaagt
     2401 accgcaaaac gcgaccattc aaactattat tttgctctcc ggcgtgttgg aaaaatatac
     2461 cgaaattgac ttgcgtgaaa acaaagtcgg tatttttagc cgcccggcaa aactgaatga
     2521 aacggtggaa gaaggcgaca gaattgagat ctatcgcccg ttaattgctg atccgaaaga
     2581 aatcagacgc aaaagagcgg ctgagcaagc ggagaagaaa tagctttctc ctattcaatc
     2641 taggggtgaa taattattcg ccctatctat tttctccctc gccattcctg ctataaattc
     2701 cctcctttga ttaaatatga aaatctttca taaattttat gtaaattttg agtttgatta
     2761 tatttaatca actttctata gttcactcta aataaaattt tatcaatttt gatgcagagg
     2821 gagcttatgg atattcgtca aaaaattgct cataacaaaa tgacttcatt ccaatggtta
     2881 gtggttgggc ttacggtgtt acttaatatg ctggacggct ttgatttaat ggcactcgcc
     2941 tttaccgcca aaagcatccg agaagaattg cagttagacg gtgcagccat cggcagctta
     3001 atgagtgccg gtttattcgg tatggcgata ggctcactct ttctttcacc acttgctgat
     3061 aaatttggtc gccgcccgtt gcttttaatc ggcacaggct tagccacgtt aggaatgctc
     3121 ctaacttatt tcgctacttc tgcgtttgaa attggtgtat ggcgtgtttt aaccggttta
     3181 ggcgtagccg ccattttaac cggcactaat gtgctagtga gtgaatactc cagccaaaaa
     3241 tggcgtggct tagcgattgc aatttatgcc tcaggctttg ggattggtgc aatgctgggc
     3301 ggaatgtctg cggtgttatt gcaaggagaa tatggctggc gtgcggtttt cctcgttggg
     3361 tcgattttaa ccggtgcggt attcgtttta ttattctttg tattgcccga atcggtggaa
     3421 tttttaattt caaaacaccc ggtgaatgct aaagctcgtt taaatcaaat tgccgttaaa
     3481 ttaggcttag gaaacggctg ggaacttcct gaaattgagg caaaaagtaa aagcaaagtg
     3541 gcaattaccc gtttattcga gcctgaatat cgccgcaata cgttgctaat ttggcttgcc
     3601 tttattgcaa tttcagcctc attttacttt atcagctctt ggactccggc actattagaa
     3661 gaagccggaa tgcctaaaac ccaaagccaa actgtgggaa tggcaatttc agttggtggt
     3721 acaatcggct cgttaatttt cggcttttta gtcagtcgct gggcggcaaa acatattttg
     3781 caggcattca gtattctggc tgcatctgct gtggttgcct ttgtgtttgc cggcaattta
     3841 gggcttgcga taacactagc cattttggtt ggcggattaa ttaacggctg cattaccggg
     3901 ctttatacca ttaacccaac cctatacgca ccggatttcc gcagcacggg cgtaggcacc
     3961 gccatcggtg tagggcgttt agtctcaatt gtttccccaa ctcttgcagg tattttatta
     4021 gacgccggct ggaaaaagaa cgagctttat ttaggtgcag cagttgtctt attaattgct
     4081 gctttcacgg tacatttttt aaaacagaga aaataagagc taccccgtaa ttaattaagg
     4141 ttttattcaa ttaattacgg ggcaagatta tataattttt ttgattaaat ttatttctca
     4201 ggtgcttgtt caagtagttt ggttaggagt ttccaataaa tctccactgc cggaatatgc
     4261 actttttcgt ccggagaatg ggcgttgaga atagttggtc caatcgagac aaaatccata
     4321 ttcgggtaga ttttgttgat taagccacat tctagccctg cgtgaatcac tttaatttga
     4381 gattcataac ctaaaatttc atcataaatc gctttggtta atggcgtgat tttggaattt
     4441 gggtttggct cccagcccgg gtagttgccc gaaaattcca cttctgctcc cactaatgcg
     4501 gttaatgagc ggattttact gcgaatttcc tcttttccgc cctcaattaa tgagcgggca
     4561 agaatggtcg ctttcacctc actcgcttcg gtgttaagca caccaatact gagtgaggtt
     4621 tccaccacat tttccaccac atcgctatta cgcaccacac catttggcat cacatttaag
     4681 aaatggatta ctcgagcagt gctggcaagg tcaaaggctt gctcaggcag ttgagcttct
     4741 tcaattaaaa attggaagtt tggctcggca attttgagtt ctgcttttac ttgttcggcg
     4801 gtttggctta aacaagcggt taatttttgc tgattttttg cagagaaaac caaggttgcg
     4861 tgggcttctc gtggaatggc attccgcacc gaaccgcctt gaatttctgc aatttggaat
     4921 tccacttcgt tgtgggcttg ttccaaaatg cgggcgaaca ctttaatcgc attcgctcgg
     4981 gtggtgtgaa tatcacagcc cgaatgcccg ccgtttaggc ctttaagcgt aacggttact
     5041 gcactatctt gctgatgagg caccaagaaa attggcagtg tcacattcac attttcccca
     5101 cctgcacagc cgatgtaaat ttccccgttt tcttcggtgt cggtgttaat cataatatcg
     5161 gcggttagcc agttcgggcg taaaccaatc gccccttcca taccggcttc ttcggtcatt
     5221 gtgagcaaca cttcaatggt tgggtgggct aaatcatcgc tatccaacac cgccaagcac
     5281 gaagccaatc caatgccgtt atctgccccc aatgttgtgc ctttggcttt tacccattcg
     5341 ccgtcaatat aaggctgaat cggatcttta gtgaaatcgt gaaccgtgcc ggtattggct
     5401 tgtggcacca tatcaagatg ggcttgcaga gcgacagttt ggcggttttc cataccttta
     5461 gttgccggtt tacggattaa cacattaccc acttcatcac gttcaacaaa gaaatttttc
     5521 gattttgccc aattcacaat aaattcagcc agttcatttt cgtggtaaga cgggtgcgga
     5581 atagcacagg ctttatcaaa ccactgccaa agtagctgcg gtgcgagcgt tgagatttca
     5641 gacataataa gccccttttg taaaatttta agaaaaaata accgcttgta ttcaagctga
     5701 tatagacctc tgacattgta gaatatttag gagaaattta acaaaaaaat cttaaaaagt
     5761 acttgatgac gagttgtttt ttttttgtac aatatgcgtg tgttttatac acatctattt
     5821 ttgtttatct tacaaaagga acattttatg tctatcaaaa aagtaacttt agccagtttg
     5881 attttattgg gtttaacggc gtgtagtagt ggtggttcgg gcagtagctc aaacaatgtg
     5941 gcaaaaccga atactaaacc gcaaactact cagcaacaaa ccgataaagc ggcagcagaa
     6001 aaagcagcaa aagacaaggc agcgaaagag aaagcagaag cagaacgttt agcggcggaa
     6061 aaagcggcga aagagaaagc ggaagcggag cgtttagcag cagaaaaaga agtagatcct
     6121 atagctatta ttaaagcaaa aggtattgat gatacaaatt acggcttaaa acttggtaat
     6181 agtaaagaaa ctattgaggg taaagtcaca gtcagaacac agagttattt atataatcag
     6241 ccatattctg tagtaacagc acaagcagtt caaagaaatg gctgggaaaa cggtaattat
     6301 attgataaag ttgatggaac agttacagtt aaaggattga aaacagagaa attaccaaca
     6361 gagggtactg caacatattc aggaaaagca tttaaccacg atggagctaa aggttttaat
     6421 ggtggtgatc taacctataa tgttaatttc tctaagcgta ccggttcagg tagagttgag
     6481 ggagaatttg gaaacttaat cgtattagaa gaggggacga ttaataatac tcagatttct
     6541 tcaacagtac atggcaataa tcctttaaac ctttctggaa aatatacagt cgaatttttc
     6601 ggtaaaaatg cagaggaaat tgccggtgaa attcagacaa aagcaaatct tactggggaa
     6661 gtgagtaatt ttggacttgc cggcactcgt ggcgatatcc aaaaataacc ttttctaacg
     6721 ttcaatgccg tttaacgaaa aattaaacgg catttgtctt gatattgctt gtagatacca
     6781 taagacacaa tagtttagat ttcaatttac agcttctaat aaccctctcc cacaagggga
     6841 gagagtgata aatcccgtag aggcgaacat ataggtccgc ccctaccaat tttctttgtc
     6901 tttatgaaaa aatatcccct tttattttcg ctgttcagcc ccgttgtatg ggcagaaaag
     6961 gtgattgaac acaacactga cccgatttcc tttgagcgtc agccgcaagc ggttaaattt
     7021 gagcaaaatg ttgtaaaaaa ttcacaaaaa ccgaccgctt atcagcctgc gtattcagtc
     7081 aatcagaatg ttgaacagca aattaaccaa gcgattctca gccaagattg ggcaacgctt
     7141 gaaccgcttt taagccgtta tccgcaaact gaaaattttg acccgttgtt gtggcactat
     7201 gcgcaagccg cacttgccta tgcgaaaaaa gatcatcaaa ccgcagtttt tcactatcgc
     7261 caactgttag ctaagccccc gagtttggtt taccctcgtt ttgatttggc gttgattttg
     7321 gcagaagatc agcaatttcg tgcggcagag caggaattta aggctattca agcccattta
     7381 ccgccggaac ttgctaaaat tgcccgcaat actcaagtcc aaattgctga aaatgaggcg
     7441 tggcagcccg atttttatct gcaatatacc caaacagata acgtgaataa tgcctcatct
     7501 tcgccgattg tgaatgtaaa tgggcggatt ttccgcaaaa atgcagacag tttgccacaa
     7561 tcagcaaaag gcgtgcgtta tggcttaggg ttgagtaaat tgcacaacgt gaaaggcaat
     7621 cattttgtcg gtttaacgct caattatagc gggatttact attgggataa ccgagattac
     7681 cgtgagcaat ccatatccgt ttcgccgaat tatagctacc gcaccgtcgc ttatcggctg
     7741 actttttcgc cttttattga gcaaaattgg ctggggagta gccgttataa tgttcaattt
     7801 ggggcaacac tcaacggttt gcgttacctt aattcgcaat ggttggtgtc ggggagtttt
     7861 acccatttgc aaaaacggta ttttgaggag ctaaccgcaa gccgttataa cagctatcag
     7921 caccaactca gtggcggtgt gcagtggcaa gcggtcaaaa atgggcggtt ttttgcaaat
     7981 ttagacggcg tgcgtgaaat tgcacgggaa aaagcacaaa gctcgaataa gtggctggct
     8041 cgagtggggg cggtttttca aggcgaacgc tgggcaacgc aggcaagtat cggctttggc
     8101 aagcgatatt ttgccgacaa gcactatttg tttggctata agcggttaga cacggaatat
     8161 caagccaatt tagcggtttg gaaccgcact tggcattggc agggcattgt gccgaagctg
     8221 aatttccgtt atcaaaaaat tgacagcaat attgctgatt tttaccctcg ccaaaacaag
     8281 gaagtctttt tcactttaga aaagctattt tagtgttggt tttttgtgct aagcatacga
     8341 ttgcgtagct gccggcacaa aaaataaatg aaatgatggc gaaaaaagca ttttcgggtt
     8401 atcctagtgc gattttttat atcggggtag cccccaattt tatattaggt tgtttctatg
     8461 agtgaaaaat acacaaatga aaaatatgtc gtgacgtggg atatgttcca tatgcacgct
     8521 cgcaagttgg cagaaaattt attacctgcc acacagtgga aagggattat tgcggtgagc
     8581 cgtggcggct tgtttccggc agccgtttta gcacgtgagt tgggtattcg ccacgtagaa
     8641 acagtgtgca ttgccagcta cgatcacgat agccaaggtg agttaaatgt gttacacgca
     8701 gccgataccg atggcgaagg ctttattgtg gtagatgatt tagtggatac tggcaacacg
     8761 gcaaaagaaa ttcgcagaat gtacccgaaa gctcgttttg taaccgtgtt tgcgaaaccg
     8821 cacggtgcac cgttggttga tgattatgtg attgatattc cacaagaaac gtggattgag
     8881 cagccttggg atttaggcat taccttcgtt cagcctttgg cacgtagata attttgtgta
     8941 atggacaatg aaagttgtcc attatttttt atttattcct atgaaatgta ggggcgaatc
     9001 atcattcgcc ctattcccaa aatcaaatag gtatatacaa ataatgagtt taggcaatct
     9061 ttatattatt tctgccccaa gtggagcagg aaaatcttcc ttaattaacg ccttgttggc
     9121 ggatttaccc cgttcggaag tacagctttc gatttcacac actacccgtc agcctcgtcc
     9181 ggcagaacag gacggcgtgc attattattt cacttcgcac gatgagttta agcagctgat
     9241 tgagcaaggg cattttttag aatgggcgga ggtgtttggc aattattacg gcacatcatt
     9301 gccgatgatt gaacgtagcc tagagcaggg cattgatgtc tttttggata ttgactggca
     9361 aggggctaga caaattcggg aaaaagtgcc gaatgtgaaa accgttttta ttttgccacc
     9421 gtcaaaaaca gaattggaaa aacgtttaat cgggcgtggg caagattccg ctgaaaccat
     9481 tgccaaacgt atggcagagg cggtgtcgga aatgaaccat tacaatgagt tcgattatgt
     9541 gattattaat gatgatttcc aacaggcatt ggcagagcta aaagcgattt taattgccga
     9601 gcgtttgagc ttaggttcgc aacaaattcg tcatcagcat ttgattactg atttgttaaa
     9661 taattaaatg aacagttgtt catttaactg gaaaggcaat ctgtttttgg gtagaatacg
     9721 cccattttcc cctctttatt ttcaaaagga aatgtaatga aactttcaaa attagcattt
     9781 tatgtggcgt tggctctaac cgtaacggct tgtaccacag ggaatatgag caatgacggg
     9841 actttgcaac aagcacagca aacctatcaa agctatgatg aaattaccaa acaatatcaa
     9901 attaacgagc aatggtggca aggctatacg gatgcggaat taaaccgtgt ggttgattta
     9961 gccatcaaaa ataaccttga tttagccaaa agcggaattg cagtcaataa agccttgtat
    10021 aacgctaatt tagtaggggc aaatttagtg ccaaccttta gtggttcagg ttctgtttct
    10081 gcggctaaag gtttaggttc ggcttcttca aataatgttt cgaccggtgt ttcaacaacc
    10141 gcagctcaag ctgcatttaa tttaagttat actgtggatt tatggcgacg tttagccgat
    10201 accgccagtg cggcagaatg gacgcataaa gccaccattg aagacttaaa agctacccgt
    10261 ttatctatta ttaatgcggt tgtgactact tactaccagt tagcttacta tcgtgatgcg
    10321 attcgtatta ccgaagagag cattcgccat tatgagcaaa tcagccgtat tttaactaac
    10381 aaaatgaatg ccggtgcgat tgatagttta gcggttgatc aggctcaaca agcggtctta
    10441 aacgccagaa atagtgtaat tgatctgaaa accaaccaaa aaattgccga gcaaacatta
    10501 cgcaatttgt taaatgttca gccaaatact ccgcttaaca ttcgttaccc gaatattatg
    10561 agcgtgaaat tgcaaggggt agatttaaat gtgccagtgt cagccattgc taatcgccct
    10621 gatgtagtag gctcgttaca acgcttacaa agtgcattta aaaccttaac cgcaaccgag
    10681 aaaagctggt tcccaacctt aaccatcggt ggttctatta ccggtagtgc aaccaatatc
    10741 ggcaatgtgg cagataaccc tgtgggtaac ggcttaatta aattggattt accgttctta
    10801 gattggaatc gggttaaaaa taacgtaaaa atttctgaaa cggattatgt gactgcccgt
    10861 ttaaactatg agcaaaaaat tacctcagcc ttaaatgaaa ttgaccgtta ttattacagt
    10921 tatacgcagt cgagaagctc gttaaaaatc cttcaagata ccaatgcgaa aaataaacgt
    10981 atcagttcat actataaaaa ccgttatgaa caaggggtgt cggagttccg tgagtggatt
    11041 accgcactga ataccgagct taattctcag ttggcgattt taaatgcaaa atatgcgatt
    11101 ttgaccaacg agaatgcggt ttaccaagca atggcaggta aatacagaag ataattatat
    11161 ctaaaactat atactatggt tggtaaaagt gggttaaggc ttgatggctt aacccgcttc
    11221 gctatttatt gctacttaaa ccattttggt aatgttagtt tagctactag aacttaatca
    11281 catcaccgtt tttcggcaca gttacacgat ttaatccctc tttttgtaca taatcacgca
    11341 tctgatcact gctgattgag gtttgtggca gggcgtccat atgcacagtt aagattttcg
    11401 cttgtggagc gattttgtgt gctttggaaa catcttcggt acacataatc gggctgcctt
    11461 caaagtttgg tagtttggca cagccggcat tcagcaccac aaagtctggt ttgtaagtgt
    11521 tgaacgaatg ttcgatttcg tggttccaaa tggtatctcc caccaaatag acggtcggtt
    11581 tgccttccgc tttcatcact acgtccatcg catcgccgac catttcggca attttcgggt
    11641 tcgcatacat cgcatcggtg ccgtgctggc cacgagttcg ggttaaggtt acgccttcaa
    11701 acggggtatc tttgccgacc acacgcacat cggtaaagcc ttgtgaacgg attaaacggg
    11761 catcaccggc attctgcaca aaaatcggca gatttttcgg cacacgttgt tgtgctacat
    11821 cgtcccagtg agcgtggtga gtgtgagtta cgatcaccgc atccacgcca tttaacactt
    11881 catcaatgct cacagtcata tccaaggtcg gattacgttt tttcgcattc ggcggtaagt
    11941 agcgatcttt ctccgctaaa tacggatcaa ccaaaaacgt cttgccggca tattcaattt
    12001 tcgccgttgc attacgaata tgttggtatt ggctctgctc agcggcaaaa cttgatgtag
    12061 cgaaaagtgc cgttgcaatc aggctcagtg ctgttttttt gacaaaagtc ataggttctc
    12121 caaaataaat taaaatgcag agtatgattt tttacgctct gcaatgctgg tttgcataag
    12181 gaacagtgtc ccttacatca ataaaagcgg tcgattttgc acatttttct gcaaaaccaa
    12241 ccgcttgttc ggctaggcta atttctctac cttcgccgga atgccatttc tcaccgctga
    12301 gccacagacc caatctaccc acggggattt gaccgctttg gtgtggtcga taatgccgag
    12361 gtcgttgagg ttaatccctt tggcgatcat cgggttggct ggaatttcca cgccgtcaat
    12421 ggtgtaggaa cttgccccaa tctgtttatg accgtagccg tgttcgatgc cgattgtgcc
    12481 tcgggcgata ccgtccaaca ccacaatctg caccgtcaag ccggcggttg gggtgctgag
    12541 tttcaccaca tcgccgtgtt taatgccttt ttcttccgca tctaaacggt tcatcgccac
    12601 taagccctca ggcttgatcg agagcagacg caacagtggg gcggtaatac tgctcataat
    12661 gttcgattta aacgaaatca gtttaaagcc ccattccgac tgcggatagt gctgctccag
    12721 cgtggagccg tccgcaaaac gtggcgacat ataacgaggg cagccccaat agtgttcacc
    12781 gttgctgtgg tgctgggctt tatacacgtt ttcgttccaa atttgcaggc agtttttcca
    12841 ctggaactcc atattctcct ctttccacgc actttcgtgt ggggcaaaac gtccgccttt
    12901 gcaatacaca ttcgccactt ttaatcgctc ttcggctttt agcgtttgtt caattttcgg
    12961 cataatccgt tgcacgccgg tgagcagcag atcttgctcg ctggcgtccg gtgcaggttt
    13021 ctcaccggca aaggcaatgt tcgctgccgc ccgtaggaag taatcttcgg tacggtggag
    13081 cggatagcgg ttgccttcta aatcggcaat cgcattttcg ccaaagcccg gcaagcccat
    13141 ttttttcgcc accgcaatca cgaaattctc catacagatg gtgtcgcctt cggcagtttt
    13201 ggcgtttttg gacggcacaa tcgggtggcg tgcggtgctg gtgcgttgag gcacaccgcc
    13261 ccacgccgtt gaaaagcccc agctctcaaa gttgtgggtg tccggcacga tgtagtccgc
    13321 cagtgcagtg gtttcgttca taaaagcatc aatagagaca aagagcggta gaattttcgg
    13381 atcttttaat ttctccaacg caatcgggtt catagcggtt aagccgtaaa cggggttcgc
    13441 catatggttg atccacgctt tcgcaaagta tggatagccc tgcaccattg aggtaaacat
    13501 ctcggtagtt tgcccgccgg tgaacggata ccacgcccct tgtgccggat acggattttc
    13561 gcccttcgtc actttctgct taaattcgct tgaattttgg tacgcctttt tactgcgggc
    13621 aaggttcgtg ccttttggct tcacttcatt cgggaagttc gctaaattgt agcgaggccc
    13681 gtccccgaaa tctttgaatt tgcctgcggc tactgccatt ccgccttttt tgttgaggtt
    13741 accgaccatt gcattcagca acaaaatcgc ccaactggta taaaaaccgg tgctgtgcat
    13801 cgtgccgccg tgagtgatgg cattggcttt atgaccgtgc gaagtgaatt ttttcgctaa
    13861 gttttcaatg gtttgcaccg gcacgccaca aatgtcgcta tattcggcaa gggttttctc
    13921 ttgtgtcgcc tctttcagca actgcattga ggatttcacc aacacttccg agccatcaag
    13981 cagttttgca atttgttcga caaaaatgac cgcttgtaag caatcttttg ctgaaatgag
    14041 ttcgccgctt gcctgatctt ttaccacaat caggttttct tccactttct cttcggggtc
    14101 gagttgcaca tcttgcagat cgctaatccg caacgcctgc ccgaatttcg ggtggttcgg
    14161 ttcgcaaata atcagatgtg acgcattggc atagctgacg tggccggcat tttccatcgc
    14221 tgccagactt gggcgggaga ggtagtcagc attgaaacgc tcgttttcga taatccaacg
    14281 caacattccc attaccaacg ccaaatcgcc ctcgggctta atcggcaccc aatggttgtt
    14341 ttgggtggcg agggaggagg tcatctccaa acgaggggaa accaccacat agctgaaatt
    14401 gtcatcaggg cggcgtttgg caagctggcg agcctgacgc ttaaacggat tgcccgactg
    14461 tgccggagac gtgccgataa acagaataaa ttcagcgtga tcccagtccg gcttggcgtg
    14521 ttgttggttg tcaaaatctt tcataaaggc acccgaaccg gcacggtacg aagcgccaca
    14581 ataagccccg tggttggaaa agttgatcgt gccgaagctc ttttgggcaa agcgttgcaa
    14641 aatcggctga cgaccttcgg ggccggcaaa agtaactaaa agctggtttg ctttcattcc
    14701 caaatcaggc tgtttcgggt taatcggatc gaccagattg cggatcgtct tcaagccctc
    14761 cacttcgcct tcaccaaata ggttgccacc attgacgatt tcctccacca actgctcaaa
    14821 gctgatggtc tgccacttgc cttcgccccg ttttccgacc cgtttcaacg gttgggtaat
    14881 ccgatacggg ctgttcaccc cctccaagaa cgccgcccct ctagcacagg cggtggagcg
    14941 attttcaatg ccactttcgc ccgccagcaa cagttccgcc ttggcaatcg gcataccgaa
    15001 cggcagggtt ttgtcggagg aaagcgggtg atacggattg cccgaaatgc gaatcacttg
    15061 gttggtgttc aaatctaccc tcgcccgaat gccacactgc gtccaacagc ccatacactg
    15121 tgtattgcac acaatttgct caggattgct gagcagtttg ccgtctttta cctgatactc
    15181 cggcgtgagc gaattaccgt gaattgcatc acgggttttc tcgcccgatg tgccgtgcat
    15241 cacccctttg gcaatctccg acaccttcgg cgaatacccg gccccaaacg ccgccgcccc
    15301 accaagtgcc agcccgcctt tcaacagatt tctgcgttta ttgttcacct tttcttcccc
    15361 cacaaattat taaaatcagt tgccatacca cgatacttac tagcaccgtt agcccaaaaa
    15421 tcgagacaat ccccaaacca ccatcaacgg ctgtccaatc gaaatgatat ggattttgca
    15481 aggcattggt tttggcaatg gtttggactt ggatcaccag tacccagcgg agtagccagc
    15541 cgaaagcgat gagggcaagc acgccgagcc attgcaagcg gtggtttttg gcagaaaaat
    15601 tgcaaatgag ggcaattagc cagaaaatgc cgacaaggta agcggtgatt gagccattga
    15661 agagctgggc aaaatcttgt gtggcttgtg gactactgaa tgctagtccg acaagcgaaa
    15721 gtgcggttaa aatcaggcag agttttgtcc atagccccgt gttggtttgg gtgtggaaca
    15781 gcattttgca gaccgcttgg gtaagcccca atgccaccgc ccacgcagaa aagagcataa
    15841 tcggcagcag ccacgcacta tgccataagg ttcttgtgcc ggtttggtag gtttcaagca
    15901 cggtgtagcc gataatgccg atagcggtga gtgtggcaaa caggcggaat gcccaaagca
    15961 agccttgatt ttgcagtatc ggcaactgta gccacgctaa ccatttcggc aggttcggcc
    16021 gggtatgatg agccaatgcc agcacaaaat aacctgctac cgccacgctg aacaggggca
    16081 ggataatcgc tccccacgcc attggagacc accacgcaaa atcggtgtag aaatgcagaa
    16141 tacggctcgg ttggtgcagg tcggcagtca atgccacagg ggcgacaatc gagccaatca
    16201 aggctaccgt caccgccgcc agctcgcaag cggtcggttt cagtgatttt tttgcaaaca
    16261 gcacggcggt aaacactgcc gttgccgcca cgcctacgaa gaagaaataa tgcacaatcc
    16321 acggcaacca gacgatatgt tgcggttcca ctaatacttc acgaatcatt ttacgcctcc
    16381 cccgtccaga gcattggttg cccgtcaatt ttgctcacaa aggcatcatc gtctagcccc
    16441 acatagaaaa cgtgtggcac ggtgccggcc tccggtttca ggactttcaa atcatctttg
    16501 tgggcttgat aaagttggga aatttgactt ttcgggtcgt tcaaatcgcc aatcaccctt
    16561 gccccgccca cgcaactttc cacgcacgcc ggcagcagac ctacctccaa acggtgagtg
    16621 cagaaggtgc atttatcggc ggttttggtc tcttcattga taaaacgggc atcatacggg
    16681 caggcttgca cgcagtaacc acagccgatg cactgctcat tgttaatcac caccacaccg
    16741 tctttacgtt gaaaggttgc ctgcaccggg cagaccggca cacacggcgg ttgatcgcaa
    16801 tggttacaca aacgaggcaa caccacattg ttcaccacct gcgtgccgtt ggtgatttca
    16861 tattgacgca ccgtggtgcg gaaactgtgc aacggcgtgg cgttctccac cgaacagctc
    16921 acggtacacg cttgacagcc gatacattta cgcaaatcaa tcagcatcgc atagcgtttg
    16981 ttctcatcgc cctcacgcca agccggcata aacgcctggg ccgattgcaa cggcacaaaa
    17041 ctcgccccca ccgtcaaggc ggaaagctct ttcaaaaagg aacgtttgct taaatccata
    17101 tttcccccac aaatttaaaa ataacaaagg tattctaagg cggagaggga acggcaaggt
    17161 attgtggttt tccacatatc aaggggaaag ttgatttggg tcaaggatga agggaaatgc
    17221 cctatacaag tagataatag ggcattgata ctaattaaaa agcaataaga tggtttagtt
    17281 tagatctaaa gtttttatac gcattaatat cactcggggt actaggtatc gctaatctcc
    17341 tagaatttgg ggcaattaat atattatgtt tctttccttt tctaattttc catcctgctt
    17401 ttaatttaga tataacaata ctatttataa g
//
